Query 037740
Match_columns 130
No_of_seqs 126 out of 1580
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2907 Predicted NAD/FAD-bind 99.9 2.3E-21 5.1E-26 125.3 10.6 125 1-127 9-137 (447)
2 PF13450 NAD_binding_8: NAD(P) 99.8 1.6E-18 3.6E-23 89.4 6.3 67 5-71 1-68 (68)
3 COG1233 Phytoene dehydrogenase 99.7 1.6E-16 3.5E-21 109.9 9.3 69 1-72 4-72 (487)
4 KOG0029 Amine oxidase [Seconda 99.7 2.9E-16 6.4E-21 108.2 9.2 79 1-79 16-95 (501)
5 PLN02268 probable polyamine ox 99.7 3.4E-16 7.5E-21 107.1 9.4 77 1-77 1-78 (435)
6 TIGR00562 proto_IX_ox protopor 99.7 3.6E-16 7.8E-21 107.6 8.4 75 1-76 3-81 (462)
7 TIGR02730 carot_isom carotene 99.7 1.6E-15 3.4E-20 105.3 10.5 74 1-74 1-78 (493)
8 TIGR02734 crtI_fam phytoene de 99.7 1.4E-15 3E-20 105.8 10.2 70 3-74 1-70 (502)
9 PRK11883 protoporphyrinogen ox 99.7 4.6E-16 1E-20 106.7 7.7 75 1-76 1-77 (451)
10 PRK07233 hypothetical protein; 99.6 1.3E-15 2.8E-20 104.0 8.2 74 2-76 1-74 (434)
11 PRK12416 protoporphyrinogen ox 99.6 1.3E-15 2.7E-20 105.0 7.8 75 2-77 3-83 (463)
12 COG1232 HemY Protoporphyrinoge 99.6 1.6E-15 3.5E-20 102.9 8.1 77 1-78 1-79 (444)
13 KOG1276 Protoporphyrinogen oxi 99.6 4.1E-15 8.8E-20 98.9 9.2 125 1-125 12-147 (491)
14 TIGR02733 desat_CrtD C-3',4' d 99.6 1.9E-15 4.1E-20 104.9 7.5 75 1-75 2-77 (492)
15 PLN02568 polyamine oxidase 99.6 7.5E-15 1.6E-19 102.5 8.3 75 1-75 6-85 (539)
16 PRK07208 hypothetical protein; 99.6 7.7E-15 1.7E-19 101.5 8.4 72 1-73 5-76 (479)
17 PLN02576 protoporphyrinogen ox 99.6 8.6E-15 1.9E-19 101.7 8.0 73 1-75 13-86 (496)
18 TIGR02731 phytoene_desat phyto 99.6 2.1E-14 4.5E-19 98.8 8.1 74 2-76 1-75 (453)
19 COG3380 Predicted NAD/FAD-depe 99.5 6.9E-14 1.5E-18 88.4 7.9 74 2-76 3-79 (331)
20 COG3349 Uncharacterized conser 99.5 3.3E-14 7.2E-19 96.7 6.8 75 1-76 1-76 (485)
21 PLN02676 polyamine oxidase 99.5 8.9E-14 1.9E-18 96.4 8.2 77 1-77 27-107 (487)
22 PLN02328 lysine-specific histo 99.5 1.4E-13 3E-18 99.3 8.9 79 1-79 239-321 (808)
23 COG1635 THI4 Ribulose 1,5-bisp 99.5 1.1E-13 2.5E-18 85.0 7.2 67 1-77 31-98 (262)
24 TIGR02732 zeta_caro_desat caro 99.5 1.2E-13 2.7E-18 95.4 8.0 74 2-76 1-75 (474)
25 PF01946 Thi4: Thi4 family; PD 99.5 5.6E-14 1.2E-18 86.4 5.5 37 1-37 18-54 (230)
26 PLN02529 lysine-specific histo 99.5 2.2E-13 4.8E-18 97.6 9.0 78 1-78 161-242 (738)
27 PLN02612 phytoene desaturase 99.5 2.2E-13 4.8E-18 95.9 8.1 75 1-76 94-169 (567)
28 COG1231 Monoamine oxidase [Ami 99.5 4.1E-13 8.8E-18 90.2 7.7 77 1-78 8-84 (450)
29 KOG0685 Flavin-containing amin 99.4 4.5E-13 9.7E-18 90.3 7.5 71 2-72 23-94 (498)
30 PLN02487 zeta-carotene desatur 99.4 1.1E-12 2.4E-17 92.2 8.1 75 1-76 76-151 (569)
31 PLN03000 amine oxidase 99.4 1.9E-12 4.1E-17 93.9 9.2 76 1-76 185-264 (881)
32 TIGR00031 UDP-GALP_mutase UDP- 99.4 2.6E-12 5.6E-17 86.3 7.8 70 1-71 2-72 (377)
33 TIGR00292 thiazole biosynthesi 99.4 6.5E-12 1.4E-16 80.5 8.6 39 1-39 22-60 (254)
34 KOG1335 Dihydrolipoamide dehyd 99.4 1.7E-13 3.6E-18 90.5 0.8 75 1-84 40-120 (506)
35 PRK04176 ribulose-1,5-biphosph 99.3 6.1E-12 1.3E-16 80.8 7.7 38 1-38 26-63 (257)
36 COG2081 Predicted flavoprotein 99.3 3E-12 6.5E-17 85.0 6.3 76 1-76 4-96 (408)
37 PF03486 HI0933_like: HI0933-l 99.3 4.4E-12 9.6E-17 86.1 7.3 76 1-76 1-94 (409)
38 COG0562 Glf UDP-galactopyranos 99.3 1.4E-11 3.1E-16 79.7 8.7 71 1-72 2-75 (374)
39 TIGR01424 gluta_reduc_2 glutat 99.3 2.1E-12 4.6E-17 88.9 4.5 39 1-40 3-41 (446)
40 PRK06467 dihydrolipoamide dehy 99.3 2.9E-12 6.3E-17 88.7 4.5 39 1-39 5-43 (471)
41 PF01494 FAD_binding_3: FAD bi 99.3 7.4E-12 1.6E-16 83.3 6.1 60 1-76 2-61 (356)
42 PTZ00058 glutathione reductase 99.3 1.1E-11 2.5E-16 87.1 7.0 36 1-37 49-84 (561)
43 TIGR01350 lipoamide_DH dihydro 99.3 9.1E-12 2E-16 86.0 6.0 40 1-41 2-41 (461)
44 PRK06416 dihydrolipoamide dehy 99.3 9E-12 2E-16 86.1 5.9 39 1-40 5-43 (462)
45 PRK05976 dihydrolipoamide dehy 99.3 6.4E-12 1.4E-16 87.1 5.0 39 1-40 5-43 (472)
46 PRK06115 dihydrolipoamide dehy 99.3 7.2E-12 1.6E-16 86.7 5.2 39 1-39 4-42 (466)
47 PRK13977 myosin-cross-reactive 99.3 1.7E-11 3.7E-16 85.6 6.9 68 2-71 24-97 (576)
48 COG0654 UbiH 2-polyprenyl-6-me 99.2 1.3E-10 2.8E-15 78.8 10.2 57 1-73 3-60 (387)
49 COG0644 FixC Dehydrogenases (f 99.2 1.2E-11 2.7E-16 83.9 5.1 37 1-37 4-40 (396)
50 TIGR01421 gluta_reduc_1 glutat 99.2 1.4E-11 3E-16 85.0 5.2 38 1-39 3-40 (450)
51 PRK06116 glutathione reductase 99.2 1.3E-11 2.7E-16 85.1 5.0 38 1-39 5-42 (450)
52 PRK08244 hypothetical protein; 99.2 4.2E-11 9.1E-16 83.4 7.4 59 1-75 3-61 (493)
53 COG1249 Lpd Pyruvate/2-oxoglut 99.2 7.4E-12 1.6E-16 85.8 3.5 45 1-54 5-49 (454)
54 PRK05249 soluble pyridine nucl 99.2 1.8E-11 3.9E-16 84.6 5.4 41 1-41 6-46 (461)
55 PRK06184 hypothetical protein; 99.2 4.6E-11 9.9E-16 83.4 7.3 60 1-76 4-63 (502)
56 PLN02172 flavin-containing mon 99.2 2.2E-11 4.7E-16 84.1 5.6 42 1-42 11-52 (461)
57 TIGR02053 MerA mercuric reduct 99.2 2.2E-11 4.8E-16 84.2 5.5 39 1-40 1-39 (463)
58 PRK07364 2-octaprenyl-6-methox 99.2 4E-11 8.7E-16 81.8 6.7 35 1-35 19-53 (415)
59 COG2072 TrkA Predicted flavopr 99.2 2.6E-11 5.7E-16 83.3 5.7 50 1-50 9-59 (443)
60 PRK06292 dihydrolipoamide dehy 99.2 2.2E-11 4.8E-16 84.1 5.0 39 1-40 4-42 (460)
61 PRK06370 mercuric reductase; V 99.2 2.9E-11 6.3E-16 83.6 5.5 38 1-39 6-43 (463)
62 PLN02546 glutathione reductase 99.2 1.9E-11 4.2E-16 86.0 4.6 44 1-53 80-132 (558)
63 PRK06183 mhpA 3-(3-hydroxyphen 99.2 5.3E-10 1.2E-14 78.8 11.7 60 1-76 11-70 (538)
64 PRK08773 2-octaprenyl-3-methyl 99.2 9.6E-11 2.1E-15 79.5 7.4 34 1-34 7-40 (392)
65 PRK07251 pyridine nucleotide-d 99.2 3.5E-11 7.6E-16 82.7 5.3 38 1-38 4-42 (438)
66 PRK10157 putative oxidoreducta 99.2 4E-11 8.7E-16 82.2 5.5 36 1-36 6-41 (428)
67 PRK06753 hypothetical protein; 99.2 8E-11 1.7E-15 79.3 6.8 35 1-35 1-35 (373)
68 PRK08010 pyridine nucleotide-d 99.2 3.7E-11 8.1E-16 82.6 5.2 39 1-39 4-43 (441)
69 PRK08163 salicylate hydroxylas 99.2 9.3E-11 2E-15 79.6 7.1 60 1-76 5-64 (396)
70 PRK08132 FAD-dependent oxidore 99.2 1E-10 2.3E-15 82.4 7.5 60 1-76 24-83 (547)
71 PRK10015 oxidoreductase; Provi 99.2 4.1E-11 8.8E-16 82.2 5.3 36 1-36 6-41 (429)
72 PRK08013 oxidoreductase; Provi 99.2 1.2E-10 2.6E-15 79.2 7.4 66 1-76 4-69 (400)
73 PRK06126 hypothetical protein; 99.2 1E-10 2.2E-15 82.4 7.1 34 1-34 8-41 (545)
74 PRK13748 putative mercuric red 99.2 4.2E-11 9.2E-16 84.6 5.2 39 1-40 99-137 (561)
75 PRK14694 putative mercuric red 99.2 5.1E-11 1.1E-15 82.6 5.4 39 1-40 7-45 (468)
76 PRK07818 dihydrolipoamide dehy 99.2 5.5E-11 1.2E-15 82.3 5.6 39 1-40 5-43 (466)
77 TIGR01988 Ubi-OHases Ubiquinon 99.2 1.1E-10 2.5E-15 78.7 6.8 35 2-36 1-35 (385)
78 PTZ00052 thioredoxin reductase 99.2 5.6E-11 1.2E-15 82.9 5.4 31 1-31 6-36 (499)
79 PRK07538 hypothetical protein; 99.2 1.3E-10 2.7E-15 79.4 6.9 35 1-35 1-35 (413)
80 PTZ00363 rab-GDP dissociation 99.2 4.4E-11 9.6E-16 82.0 4.6 44 1-44 5-48 (443)
81 PRK07045 putative monooxygenas 99.2 1.3E-10 2.7E-15 78.8 6.7 35 1-35 6-40 (388)
82 PRK06617 2-octaprenyl-6-methox 99.2 1.7E-10 3.7E-15 77.9 7.2 33 1-33 2-34 (374)
83 PRK08849 2-octaprenyl-3-methyl 99.1 1.8E-10 3.9E-15 78.0 7.3 66 1-76 4-69 (384)
84 TIGR02032 GG-red-SF geranylger 99.1 8.1E-11 1.7E-15 76.7 5.4 37 1-37 1-37 (295)
85 PLN02661 Putative thiazole syn 99.1 1.8E-10 4E-15 76.4 7.0 37 1-37 93-130 (357)
86 TIGR01423 trypano_reduc trypan 99.1 7E-11 1.5E-15 82.1 5.3 44 1-53 4-56 (486)
87 PRK07588 hypothetical protein; 99.1 2E-10 4.3E-15 77.9 7.3 34 1-34 1-34 (391)
88 PLN02976 amine oxidase 99.1 2.3E-10 5E-15 86.6 8.1 77 1-77 694-779 (1713)
89 TIGR01377 soxA_mon sarcosine o 99.1 8.6E-11 1.9E-15 79.3 5.4 35 1-35 1-35 (380)
90 PRK06185 hypothetical protein; 99.1 1.9E-10 4.1E-15 78.3 7.1 60 1-76 7-66 (407)
91 PRK06847 hypothetical protein; 99.1 2.2E-10 4.7E-15 77.2 7.3 35 1-35 5-39 (375)
92 PLN02507 glutathione reductase 99.1 9.3E-11 2E-15 81.8 5.5 31 1-31 26-56 (499)
93 PRK07608 ubiquinone biosynthes 99.1 2.1E-10 4.5E-15 77.6 7.1 35 1-35 6-40 (388)
94 PRK05868 hypothetical protein; 99.1 2.5E-10 5.3E-15 77.1 7.3 35 1-35 2-36 (372)
95 PRK07236 hypothetical protein; 99.1 2.8E-10 6E-15 77.1 7.6 61 1-76 7-67 (386)
96 PF12831 FAD_oxidored: FAD dep 99.1 6.3E-11 1.4E-15 81.2 4.5 39 2-40 1-39 (428)
97 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 2.9E-10 6.3E-15 77.2 7.6 62 1-76 3-64 (390)
98 PRK08243 4-hydroxybenzoate 3-m 99.1 2.4E-10 5.1E-15 77.6 7.2 60 1-76 3-64 (392)
99 PRK07333 2-octaprenyl-6-methox 99.1 2.3E-10 5E-15 77.8 7.1 34 1-34 2-37 (403)
100 PRK07190 hypothetical protein; 99.1 2E-10 4.4E-15 79.9 6.8 35 1-35 6-40 (487)
101 TIGR01292 TRX_reduct thioredox 99.1 2E-10 4.4E-15 75.0 6.5 39 1-40 1-39 (300)
102 PRK05714 2-octaprenyl-3-methyl 99.1 1.9E-10 4E-15 78.4 6.5 67 1-76 3-70 (405)
103 PRK12409 D-amino acid dehydrog 99.1 1.2E-10 2.6E-15 79.4 5.6 40 1-40 2-41 (410)
104 TIGR01984 UbiH 2-polyprenyl-6- 99.1 2.5E-10 5.4E-15 77.1 6.9 33 2-34 1-34 (382)
105 PRK07494 2-octaprenyl-6-methox 99.1 2.2E-10 4.7E-15 77.6 6.6 35 1-35 8-42 (388)
106 PLN02985 squalene monooxygenas 99.1 2.6E-10 5.6E-15 79.8 7.0 60 1-76 44-103 (514)
107 PRK11728 hydroxyglutarate oxid 99.1 1.2E-10 2.5E-15 79.1 5.2 42 1-42 3-46 (393)
108 PF01266 DAO: FAD dependent ox 99.1 1.3E-10 2.8E-15 77.4 5.1 38 2-40 1-38 (358)
109 KOG1399 Flavin-containing mono 99.1 1.2E-10 2.5E-15 79.8 4.9 41 2-42 8-48 (448)
110 PTZ00153 lipoamide dehydrogena 99.1 1.6E-10 3.4E-15 82.7 5.4 45 1-54 117-162 (659)
111 TIGR02023 BchP-ChlP geranylger 99.1 1.4E-10 3E-15 78.6 4.9 32 1-32 1-32 (388)
112 COG0492 TrxB Thioredoxin reduc 99.1 1.7E-10 3.6E-15 75.7 5.1 40 1-41 4-44 (305)
113 TIGR03219 salicylate_mono sali 99.1 3.7E-10 8E-15 77.2 7.0 36 1-36 1-37 (414)
114 PRK14727 putative mercuric red 99.1 1.4E-10 3.1E-15 80.6 5.0 41 1-41 17-57 (479)
115 PRK08850 2-octaprenyl-6-methox 99.1 3.9E-10 8.4E-15 76.9 7.0 64 1-77 5-70 (405)
116 PRK06475 salicylate hydroxylas 99.1 4E-10 8.6E-15 76.7 7.0 59 2-76 4-62 (400)
117 PRK11445 putative oxidoreducta 99.1 4.3E-10 9.3E-15 75.4 7.0 34 1-35 2-35 (351)
118 TIGR02028 ChlP geranylgeranyl 99.1 2.1E-10 4.5E-15 78.1 5.5 34 1-34 1-34 (398)
119 PF01593 Amino_oxidase: Flavin 99.1 2.7E-10 5.8E-15 77.4 6.0 64 10-74 1-66 (450)
120 TIGR01989 COQ6 Ubiquinone bios 99.1 4.1E-10 8.9E-15 77.5 6.8 33 1-33 1-37 (437)
121 TIGR01438 TGR thioredoxin and 99.1 1.4E-10 3E-15 80.7 4.5 32 1-32 3-34 (484)
122 PF13738 Pyr_redox_3: Pyridine 99.1 1.6E-10 3.5E-15 71.6 4.4 38 4-41 1-39 (203)
123 PRK06327 dihydrolipoamide dehy 99.1 2.2E-10 4.8E-15 79.6 5.4 39 1-39 5-49 (475)
124 PRK12266 glpD glycerol-3-phosp 99.1 2.4E-10 5.1E-15 80.0 5.5 38 1-38 7-44 (508)
125 PRK08294 phenol 2-monooxygenas 99.1 5E-10 1.1E-14 80.1 7.2 61 1-77 33-94 (634)
126 PRK11259 solA N-methyltryptoph 99.1 2.4E-10 5.2E-15 77.0 5.3 35 1-35 4-38 (376)
127 PRK06834 hypothetical protein; 99.1 6.5E-10 1.4E-14 77.5 7.5 34 1-34 4-37 (488)
128 PLN00093 geranylgeranyl diphos 99.1 2.2E-10 4.7E-15 79.0 5.1 33 1-33 40-72 (450)
129 PRK06481 fumarate reductase fl 99.1 3.2E-10 6.9E-15 79.3 5.6 38 1-38 62-99 (506)
130 TIGR03315 Se_ygfK putative sel 99.1 3E-10 6.4E-15 84.1 5.6 40 1-40 538-577 (1012)
131 PRK12779 putative bifunctional 99.1 2.9E-10 6.2E-15 84.2 5.5 40 1-40 307-346 (944)
132 TIGR03364 HpnW_proposed FAD de 99.1 3.8E-10 8.2E-15 75.9 5.7 34 1-34 1-34 (365)
133 PRK13369 glycerol-3-phosphate 99.1 3.4E-10 7.5E-15 79.1 5.5 37 1-37 7-43 (502)
134 TIGR03143 AhpF_homolog putativ 99.0 4.3E-10 9.2E-15 79.5 5.6 39 1-40 5-43 (555)
135 PF00890 FAD_binding_2: FAD bi 99.0 3.3E-10 7.2E-15 77.4 4.9 36 2-37 1-36 (417)
136 PTZ00367 squalene epoxidase; P 99.0 5.4E-10 1.2E-14 78.9 6.1 61 1-76 34-94 (567)
137 PRK05732 2-octaprenyl-6-methox 99.0 9.4E-10 2E-14 74.6 7.1 33 1-33 4-39 (395)
138 PRK09126 hypothetical protein; 99.0 3.3E-10 7.2E-15 76.8 4.8 34 1-34 4-37 (392)
139 PRK07121 hypothetical protein; 99.0 4.9E-10 1.1E-14 78.2 5.6 39 1-39 21-59 (492)
140 TIGR01790 carotene-cycl lycope 99.0 4.2E-10 9.1E-15 76.2 5.1 36 2-37 1-36 (388)
141 PRK07846 mycothione reductase; 99.0 2.5E-10 5.4E-15 78.8 4.0 41 1-53 2-42 (451)
142 PF00743 FMO-like: Flavin-bind 99.0 3.7E-10 8E-15 79.2 4.8 41 2-42 3-43 (531)
143 PRK01747 mnmC bifunctional tRN 99.0 4.4E-10 9.4E-15 80.9 5.3 43 1-43 261-303 (662)
144 TIGR01813 flavo_cyto_c flavocy 99.0 5.2E-10 1.1E-14 77.0 5.4 37 2-38 1-38 (439)
145 PRK00711 D-amino acid dehydrog 99.0 5.1E-10 1.1E-14 76.4 5.3 44 1-44 1-44 (416)
146 PRK11101 glpA sn-glycerol-3-ph 99.0 5.3E-10 1.1E-14 78.9 5.4 35 1-35 7-41 (546)
147 PRK08274 tricarballylate dehyd 99.0 6.4E-10 1.4E-14 77.1 5.6 37 1-37 5-43 (466)
148 PRK12831 putative oxidoreducta 99.0 6.7E-10 1.5E-14 76.9 5.5 39 1-39 141-179 (464)
149 TIGR03329 Phn_aa_oxid putative 99.0 5.4E-10 1.2E-14 77.4 5.0 43 1-44 25-69 (460)
150 KOG2415 Electron transfer flav 99.0 4.9E-10 1.1E-14 75.3 4.4 41 1-41 77-123 (621)
151 PRK08020 ubiF 2-octaprenyl-3-m 99.0 5E-10 1.1E-14 75.9 4.4 33 1-33 6-38 (391)
152 TIGR03452 mycothione_red mycot 99.0 4E-10 8.7E-15 77.8 4.0 41 1-53 3-43 (452)
153 KOG1298 Squalene monooxygenase 99.0 2.5E-09 5.3E-14 71.3 7.2 33 1-33 46-78 (509)
154 PLN02464 glycerol-3-phosphate 99.0 8.6E-10 1.9E-14 78.8 5.4 37 1-37 72-108 (627)
155 PRK12775 putative trifunctiona 99.0 8.8E-10 1.9E-14 82.3 5.6 39 1-39 431-469 (1006)
156 COG0665 DadA Glycine/D-amino a 99.0 8.4E-10 1.8E-14 74.6 5.1 36 1-36 5-40 (387)
157 PRK12837 3-ketosteroid-delta-1 99.0 9.4E-10 2E-14 77.1 5.4 38 1-39 8-45 (513)
158 PLN02463 lycopene beta cyclase 99.0 7.6E-10 1.7E-14 76.2 4.8 33 1-33 29-61 (447)
159 PRK06912 acoL dihydrolipoamide 99.0 1.2E-09 2.5E-14 75.7 5.5 38 1-39 1-38 (458)
160 PLN02852 ferredoxin-NADP+ redu 99.0 1.4E-09 3E-14 75.6 5.6 41 1-41 27-69 (491)
161 COG1148 HdrA Heterodisulfide r 99.0 1.1E-09 2.4E-14 74.7 5.0 39 2-40 126-164 (622)
162 TIGR01320 mal_quin_oxido malat 99.0 8.8E-10 1.9E-14 76.7 4.6 41 1-41 1-43 (483)
163 PRK12834 putative FAD-binding 99.0 1.5E-09 3.2E-14 76.7 5.7 39 1-39 5-45 (549)
164 KOG0405 Pyridine nucleotide-di 99.0 2.1E-10 4.5E-15 75.4 1.3 76 1-85 21-101 (478)
165 PRK12769 putative oxidoreducta 99.0 1.5E-09 3.2E-14 78.1 5.7 40 1-40 328-367 (654)
166 PRK12842 putative succinate de 99.0 1.4E-09 3E-14 77.2 5.5 39 1-39 10-48 (574)
167 PRK09853 putative selenate red 98.9 1.8E-09 3.9E-14 80.0 5.6 40 1-40 540-579 (1019)
168 KOG4716 Thioredoxin reductase 98.9 1.7E-09 3.7E-14 71.0 4.6 53 1-54 20-72 (503)
169 TIGR01372 soxA sarcosine oxida 98.9 2E-09 4.4E-14 80.4 5.7 41 1-41 164-204 (985)
170 PLN02927 antheraxanthin epoxid 98.9 4.5E-09 9.8E-14 75.2 7.1 33 1-33 82-114 (668)
171 TIGR01373 soxB sarcosine oxida 98.9 2.1E-09 4.5E-14 73.3 5.3 34 1-34 31-66 (407)
172 PRK12778 putative bifunctional 98.9 2.3E-09 5.1E-14 78.2 5.6 40 1-40 432-471 (752)
173 TIGR01789 lycopene_cycl lycope 98.9 2.5E-09 5.3E-14 72.2 5.3 36 2-37 1-38 (370)
174 PRK05257 malate:quinone oxidor 98.9 1.6E-09 3.4E-14 75.6 4.5 41 1-41 6-48 (494)
175 KOG2614 Kynurenine 3-monooxyge 98.9 3.5E-09 7.6E-14 70.9 5.8 36 2-37 4-39 (420)
176 PRK12844 3-ketosteroid-delta-1 98.9 2.7E-09 5.8E-14 75.5 5.5 39 1-39 7-45 (557)
177 PRK10262 thioredoxin reductase 98.9 2.9E-09 6.3E-14 70.6 5.3 39 1-40 7-45 (321)
178 PRK07804 L-aspartate oxidase; 98.9 2.6E-09 5.6E-14 75.4 5.2 37 1-37 17-53 (541)
179 TIGR01316 gltA glutamate synth 98.9 3.1E-09 6.7E-14 73.4 5.5 39 1-39 134-172 (449)
180 PRK12835 3-ketosteroid-delta-1 98.9 2.8E-09 6.1E-14 75.7 5.4 38 1-38 12-49 (584)
181 PTZ00139 Succinate dehydrogena 98.9 2.9E-09 6.3E-14 76.1 5.4 37 1-37 30-66 (617)
182 PRK07803 sdhA succinate dehydr 98.9 3.2E-09 6.8E-14 76.0 5.5 37 1-37 9-45 (626)
183 PRK06452 sdhA succinate dehydr 98.9 3.1E-09 6.7E-14 75.3 5.3 37 1-37 6-42 (566)
184 PRK07843 3-ketosteroid-delta-1 98.9 3.4E-09 7.3E-14 75.0 5.5 38 1-38 8-45 (557)
185 PRK15317 alkyl hydroperoxide r 98.9 3.2E-09 7E-14 74.5 5.3 38 1-40 212-249 (517)
186 PRK07057 sdhA succinate dehydr 98.9 3.5E-09 7.7E-14 75.4 5.5 37 1-37 13-49 (591)
187 PRK06996 hypothetical protein; 98.9 5.6E-09 1.2E-13 71.1 6.3 62 1-76 12-77 (398)
188 PLN00128 Succinate dehydrogena 98.9 3.4E-09 7.4E-14 75.9 5.4 37 1-37 51-87 (635)
189 COG0579 Predicted dehydrogenas 98.9 3.2E-09 6.9E-14 72.3 4.9 44 1-44 4-49 (429)
190 TIGR01812 sdhA_frdA_Gneg succi 98.9 3.7E-09 8E-14 75.0 5.4 36 2-37 1-36 (566)
191 PLN02697 lycopene epsilon cycl 98.9 3.7E-09 8.1E-14 74.1 5.2 35 1-35 109-143 (529)
192 TIGR03140 AhpF alkyl hydropero 98.9 3.9E-09 8.4E-14 74.1 5.3 38 1-40 213-250 (515)
193 PRK12845 3-ketosteroid-delta-1 98.9 3.7E-09 7.9E-14 74.9 5.2 39 1-40 17-55 (564)
194 PRK12810 gltD glutamate syntha 98.9 4.4E-09 9.6E-14 73.1 5.5 39 1-39 144-182 (471)
195 PRK08641 sdhA succinate dehydr 98.9 3.8E-09 8.1E-14 75.2 5.2 37 1-37 4-40 (589)
196 PRK05192 tRNA uridine 5-carbox 98.9 3.6E-09 7.8E-14 74.8 5.0 36 1-36 5-41 (618)
197 PRK08958 sdhA succinate dehydr 98.9 4.4E-09 9.5E-14 74.8 5.5 37 1-37 8-44 (588)
198 PRK09078 sdhA succinate dehydr 98.9 3.9E-09 8.6E-14 75.2 5.2 37 1-37 13-49 (598)
199 PF05834 Lycopene_cycl: Lycope 98.9 3.2E-09 6.9E-14 71.8 4.4 34 2-35 1-36 (374)
200 PRK07845 flavoprotein disulfid 98.9 4.2E-09 9.1E-14 73.1 5.1 38 1-39 2-39 (466)
201 PRK07573 sdhA succinate dehydr 98.9 3.7E-09 8E-14 75.8 4.8 36 1-36 36-71 (640)
202 PTZ00188 adrenodoxin reductase 98.9 6.2E-09 1.3E-13 71.9 5.5 40 2-41 41-81 (506)
203 PRK06069 sdhA succinate dehydr 98.9 5.6E-09 1.2E-13 74.2 5.5 37 1-37 6-45 (577)
204 PRK13339 malate:quinone oxidor 98.8 5.2E-09 1.1E-13 72.8 5.1 41 1-41 7-49 (497)
205 COG0493 GltD NADPH-dependent g 98.8 6.3E-09 1.4E-13 71.7 5.4 67 2-76 125-191 (457)
206 PRK12839 hypothetical protein; 98.8 6.3E-09 1.4E-13 73.8 5.5 40 1-40 9-48 (572)
207 PRK12814 putative NADPH-depend 98.8 6.6E-09 1.4E-13 74.8 5.6 40 1-40 194-233 (652)
208 TIGR01318 gltD_gamma_fam gluta 98.8 8.4E-09 1.8E-13 71.6 5.6 40 1-40 142-181 (467)
209 PRK12809 putative oxidoreducta 98.8 8.4E-09 1.8E-13 74.1 5.6 40 1-40 311-350 (639)
210 PF00732 GMC_oxred_N: GMC oxid 98.8 4.5E-09 9.8E-14 68.8 3.9 36 1-36 1-37 (296)
211 PRK08626 fumarate reductase fl 98.8 7.6E-09 1.6E-13 74.4 5.2 37 1-37 6-42 (657)
212 PRK11749 dihydropyrimidine deh 98.8 8.1E-09 1.8E-13 71.5 5.2 39 1-39 141-179 (457)
213 PRK08401 L-aspartate oxidase; 98.8 8.7E-09 1.9E-13 71.5 5.2 33 1-33 2-34 (466)
214 PRK07395 L-aspartate oxidase; 98.8 6.7E-09 1.5E-13 73.4 4.6 37 1-38 10-46 (553)
215 PRK05945 sdhA succinate dehydr 98.8 7.7E-09 1.7E-13 73.5 4.9 37 1-37 4-42 (575)
216 PLN02815 L-aspartate oxidase 98.8 8.6E-09 1.9E-13 73.3 5.1 36 1-37 30-65 (594)
217 PF07992 Pyr_redox_2: Pyridine 98.8 9.8E-09 2.1E-13 63.5 4.8 33 2-34 1-33 (201)
218 PRK06175 L-aspartate oxidase; 98.8 8.3E-09 1.8E-13 71.0 4.7 37 1-38 5-41 (433)
219 PRK06854 adenylylsulfate reduc 98.8 9.9E-09 2.1E-13 73.3 5.2 36 1-36 12-49 (608)
220 PTZ00306 NADH-dependent fumara 98.8 1E-08 2.2E-13 77.8 5.4 39 1-39 410-448 (1167)
221 PRK06134 putative FAD-binding 98.8 1.2E-08 2.7E-13 72.5 5.5 40 1-40 13-52 (581)
222 PRK05335 tRNA (uracil-5-)-meth 98.8 1.1E-08 2.5E-13 69.6 5.0 35 1-35 3-37 (436)
223 TIGR00551 nadB L-aspartate oxi 98.8 1.3E-08 2.8E-13 71.1 5.3 37 1-38 3-39 (488)
224 PTZ00383 malate:quinone oxidor 98.8 1E-08 2.2E-13 71.5 4.7 36 1-36 46-83 (497)
225 PRK09231 fumarate reductase fl 98.8 1.4E-08 3E-13 72.3 5.1 37 1-37 5-43 (582)
226 PRK08275 putative oxidoreducta 98.8 1.5E-08 3.3E-13 71.7 5.2 35 1-35 10-46 (554)
227 PRK06263 sdhA succinate dehydr 98.8 1.6E-08 3.4E-13 71.5 5.2 37 1-38 8-45 (543)
228 TIGR00275 flavoprotein, HI0933 98.8 8.9E-09 1.9E-13 70.2 3.8 34 4-37 1-34 (400)
229 TIGR01176 fum_red_Fp fumarate 98.7 1.6E-08 3.4E-13 71.9 5.1 39 1-39 4-44 (580)
230 PRK06567 putative bifunctional 98.7 1.6E-08 3.6E-13 74.6 5.1 36 1-36 384-419 (1028)
231 COG1053 SdhA Succinate dehydro 98.7 1.9E-08 4.2E-13 71.0 5.2 38 1-38 7-44 (562)
232 PRK08071 L-aspartate oxidase; 98.7 1.7E-08 3.7E-13 70.8 4.9 37 1-38 4-40 (510)
233 COG0578 GlpA Glycerol-3-phosph 98.7 2.2E-08 4.8E-13 69.7 5.2 39 1-39 13-51 (532)
234 TIGR02462 pyranose_ox pyranose 98.7 2.3E-08 4.9E-13 70.3 5.3 37 1-37 1-37 (544)
235 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 2.2E-08 4.7E-13 68.5 5.0 34 2-35 2-35 (433)
236 PRK08205 sdhA succinate dehydr 98.7 2.2E-08 4.8E-13 71.3 5.2 36 1-37 6-41 (583)
237 PRK09077 L-aspartate oxidase; 98.7 2.6E-08 5.7E-13 70.3 5.2 37 1-38 9-45 (536)
238 TIGR01317 GOGAT_sm_gam glutama 98.7 3.1E-08 6.7E-13 69.2 5.4 39 1-39 144-182 (485)
239 PRK12771 putative glutamate sy 98.7 3.2E-08 6.8E-13 70.3 5.5 38 2-39 139-176 (564)
240 PRK12843 putative FAD-binding 98.7 3.2E-08 6.9E-13 70.4 5.5 39 1-39 17-55 (578)
241 TIGR02061 aprA adenosine phosp 98.7 3.8E-08 8.1E-13 70.3 5.2 33 2-34 1-37 (614)
242 PRK08255 salicylyl-CoA 5-hydro 98.7 3.1E-08 6.7E-13 72.5 4.8 34 1-34 1-36 (765)
243 PRK12770 putative glutamate sy 98.7 6.6E-08 1.4E-12 65.0 5.5 40 1-40 19-58 (352)
244 TIGR03467 HpnE squalene-associ 98.6 7.2E-08 1.6E-12 65.8 5.6 62 14-76 1-64 (419)
245 PRK05329 anaerobic glycerol-3- 98.6 6.2E-08 1.4E-12 66.4 5.0 32 1-32 3-34 (422)
246 TIGR01811 sdhA_Bsu succinate d 98.6 4.4E-08 9.6E-13 70.0 4.4 34 3-36 1-34 (603)
247 KOG0399 Glutamate synthase [Am 98.6 5.3E-08 1.1E-12 72.6 4.4 39 1-39 1786-1824(2142)
248 PRK13984 putative oxidoreducta 98.6 8.9E-08 1.9E-12 68.6 5.6 40 1-40 284-323 (604)
249 KOG4254 Phytoene desaturase [C 98.6 3.7E-08 8.1E-13 66.9 3.4 56 1-56 15-71 (561)
250 COG3075 GlpB Anaerobic glycero 98.6 7.2E-08 1.6E-12 63.3 4.5 31 1-31 3-33 (421)
251 PRK02106 choline dehydrogenase 98.6 6.1E-08 1.3E-12 68.8 4.5 33 1-33 6-39 (560)
252 PRK13800 putative oxidoreducta 98.6 9E-08 2E-12 71.2 5.2 34 1-34 14-47 (897)
253 PF00070 Pyr_redox: Pyridine n 98.6 3.1E-07 6.8E-12 48.8 5.4 35 2-36 1-35 (80)
254 PF04820 Trp_halogenase: Trypt 98.5 1.5E-07 3.2E-12 65.3 5.2 58 2-76 1-61 (454)
255 PF13454 NAD_binding_9: FAD-NA 98.5 2.4E-07 5.2E-12 55.4 5.4 68 4-72 1-78 (156)
256 TIGR00136 gidA glucose-inhibit 98.5 1.8E-07 4E-12 66.4 5.3 36 1-36 1-36 (617)
257 PF01134 GIDA: Glucose inhibit 98.5 1.4E-07 3.1E-12 63.7 4.4 35 2-36 1-36 (392)
258 PRK09897 hypothetical protein; 98.5 2.2E-07 4.7E-12 65.5 5.3 41 1-41 2-45 (534)
259 KOG2820 FAD-dependent oxidored 98.5 1.6E-07 3.6E-12 61.7 4.2 35 1-35 8-42 (399)
260 PRK07512 L-aspartate oxidase; 98.5 1.4E-07 3.1E-12 66.3 4.2 32 1-34 10-41 (513)
261 KOG2853 Possible oxidoreductas 98.5 1.8E-07 3.9E-12 61.9 4.2 36 2-37 88-127 (509)
262 TIGR03378 glycerol3P_GlpB glyc 98.5 2.5E-07 5.3E-12 63.2 4.9 33 1-33 1-33 (419)
263 COG4529 Uncharacterized protei 98.5 8.6E-07 1.9E-11 60.9 6.9 71 1-71 2-79 (474)
264 COG3573 Predicted oxidoreducta 98.4 6.5E-07 1.4E-11 59.3 5.1 40 1-40 6-47 (552)
265 COG2303 BetA Choline dehydroge 98.4 3E-07 6.5E-12 65.1 3.7 32 1-32 8-39 (542)
266 KOG2960 Protein involved in th 98.4 7.5E-08 1.6E-12 59.8 0.3 38 1-38 77-116 (328)
267 TIGR01810 betA choline dehydro 98.4 4.4E-07 9.6E-12 64.2 4.0 32 2-33 1-33 (532)
268 TIGR02485 CobZ_N-term precorri 98.4 4.8E-07 1E-11 62.4 3.9 34 5-38 1-36 (432)
269 KOG1800 Ferredoxin/adrenodoxin 98.3 1.2E-06 2.5E-11 58.7 5.0 39 2-40 22-62 (468)
270 PF00996 GDI: GDP dissociation 98.3 9.8E-07 2.1E-11 60.7 4.8 44 1-44 5-48 (438)
271 PRK09564 coenzyme A disulfide 98.3 1.1E-06 2.4E-11 60.8 4.8 36 1-36 1-38 (444)
272 PLN02785 Protein HOTHEAD 98.3 9.4E-07 2E-11 63.1 4.6 32 1-33 56-87 (587)
273 PF06100 Strep_67kDa_ant: Stre 98.3 2.4E-06 5.3E-11 59.1 5.9 41 3-43 5-49 (500)
274 PRK13512 coenzyme A disulfide 98.2 2.3E-06 5.1E-11 59.2 4.9 35 2-36 3-39 (438)
275 PRK09754 phenylpropionate diox 98.2 2.6E-06 5.6E-11 58.2 4.8 34 2-35 5-40 (396)
276 KOG0042 Glycerol-3-phosphate d 98.2 6.2E-07 1.3E-11 62.4 1.5 39 1-39 68-106 (680)
277 COG3634 AhpF Alkyl hydroperoxi 98.2 9.2E-07 2E-11 58.8 2.0 36 1-38 212-247 (520)
278 KOG0404 Thioredoxin reductase 98.2 6.8E-06 1.5E-10 51.6 5.4 42 2-43 10-55 (322)
279 KOG2665 Predicted FAD-dependen 98.1 2.1E-06 4.4E-11 56.5 2.8 44 1-44 49-94 (453)
280 COG0029 NadB Aspartate oxidase 98.1 3.2E-06 6.9E-11 58.4 3.6 32 2-34 9-40 (518)
281 KOG2404 Fumarate reductase, fl 98.1 6.4E-06 1.4E-10 54.4 4.4 38 2-39 11-48 (477)
282 KOG4405 GDP dissociation inhib 98.1 5.1E-06 1.1E-10 56.3 4.1 45 1-45 9-53 (547)
283 PTZ00318 NADH dehydrogenase-li 98.0 6.5E-06 1.4E-10 56.8 4.1 34 1-34 11-44 (424)
284 KOG1238 Glucose dehydrogenase/ 98.0 7E-06 1.5E-10 58.3 4.0 35 1-35 58-93 (623)
285 COG0446 HcaD Uncharacterized N 98.0 1.2E-05 2.7E-10 54.7 4.9 38 2-39 138-175 (415)
286 PF13434 K_oxygenase: L-lysine 98.0 1.8E-05 3.9E-10 53.2 5.3 34 1-34 3-37 (341)
287 PRK04965 NADH:flavorubredoxin 97.9 2.6E-05 5.5E-10 53.1 5.1 34 1-34 3-38 (377)
288 TIGR03169 Nterm_to_SelD pyridi 97.8 2.4E-05 5.1E-10 52.9 4.0 33 2-34 1-36 (364)
289 KOG2852 Possible oxidoreductas 97.8 7.4E-06 1.6E-10 53.2 1.2 36 2-37 12-53 (380)
290 PF01210 NAD_Gly3P_dh_N: NAD-d 97.8 3.8E-05 8.2E-10 46.0 4.0 32 2-33 1-32 (157)
291 KOG3855 Monooxygenase involved 97.7 4.9E-05 1.1E-09 51.7 4.0 32 1-32 37-72 (481)
292 PF02737 3HCDH_N: 3-hydroxyacy 97.7 6.3E-05 1.4E-09 46.1 4.2 33 2-34 1-33 (180)
293 COG0445 GidA Flavin-dependent 97.7 4.6E-05 9.9E-10 53.6 3.5 32 1-32 5-36 (621)
294 PF06039 Mqo: Malate:quinone o 97.7 7.3E-05 1.6E-09 51.7 4.5 37 1-37 4-42 (488)
295 PRK02705 murD UDP-N-acetylmura 97.7 7.5E-05 1.6E-09 52.1 4.6 33 2-34 2-34 (459)
296 COG1206 Gid NAD(FAD)-utilizing 97.7 6.4E-05 1.4E-09 49.9 3.7 34 2-35 5-38 (439)
297 PRK01438 murD UDP-N-acetylmura 97.6 0.0001 2.2E-09 51.7 4.8 32 2-33 18-49 (480)
298 COG5044 MRS6 RAB proteins gera 97.6 0.00013 2.8E-09 49.1 4.8 44 1-44 7-50 (434)
299 COG0569 TrkA K+ transport syst 97.6 0.00013 2.7E-09 46.4 4.5 34 1-34 1-34 (225)
300 KOG2311 NAD/FAD-utilizing prot 97.6 7.7E-05 1.7E-09 51.8 3.6 32 1-32 29-60 (679)
301 COG1252 Ndh NADH dehydrogenase 97.6 0.00014 3E-09 49.8 4.6 33 2-34 5-39 (405)
302 TIGR02374 nitri_red_nirB nitri 97.6 0.00012 2.6E-09 54.4 4.5 34 3-36 1-37 (785)
303 PRK09754 phenylpropionate diox 97.6 0.00017 3.6E-09 49.5 4.9 36 2-37 146-181 (396)
304 PRK05976 dihydrolipoamide dehy 97.6 0.00018 3.8E-09 50.5 4.9 34 2-35 182-215 (472)
305 PRK07251 pyridine nucleotide-d 97.6 0.00022 4.8E-09 49.5 5.4 35 2-36 159-193 (438)
306 PRK14989 nitrite reductase sub 97.5 0.0002 4.4E-09 53.5 5.0 35 2-36 5-43 (847)
307 PRK06129 3-hydroxyacyl-CoA deh 97.5 0.00019 4.1E-09 47.6 4.4 32 2-33 4-35 (308)
308 PF03721 UDPG_MGDP_dh_N: UDP-g 97.5 0.00014 2.9E-09 44.9 3.4 34 1-34 1-34 (185)
309 PF02558 ApbA: Ketopantoate re 97.5 0.00031 6.7E-09 41.6 4.8 31 3-33 1-31 (151)
310 TIGR01350 lipoamide_DH dihydro 97.5 0.00026 5.5E-09 49.5 5.0 35 2-36 172-206 (461)
311 PRK04965 NADH:flavorubredoxin 97.5 0.00028 6E-09 48.1 4.9 35 2-36 143-177 (377)
312 KOG2844 Dimethylglycine dehydr 97.4 0.00024 5.1E-09 51.3 4.2 32 2-33 41-73 (856)
313 PRK06467 dihydrolipoamide dehy 97.4 0.00035 7.6E-09 49.0 5.0 35 2-36 176-210 (471)
314 TIGR02053 MerA mercuric reduct 97.4 0.00038 8.2E-09 48.7 5.0 35 2-36 168-202 (463)
315 PRK06912 acoL dihydrolipoamide 97.4 0.0004 8.7E-09 48.5 5.1 35 2-36 172-206 (458)
316 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.00041 8.8E-09 48.4 5.0 36 2-37 175-210 (454)
317 PRK07846 mycothione reductase; 97.4 0.00041 8.8E-09 48.5 5.0 35 2-36 168-202 (451)
318 PRK06416 dihydrolipoamide dehy 97.4 0.00046 1E-08 48.3 5.0 35 2-36 174-208 (462)
319 PRK14106 murD UDP-N-acetylmura 97.4 0.00044 9.5E-09 48.2 4.9 32 2-33 7-38 (450)
320 PRK08293 3-hydroxybutyryl-CoA 97.3 0.00044 9.6E-09 45.4 4.5 32 2-33 5-36 (287)
321 PRK09260 3-hydroxybutyryl-CoA 97.3 0.00041 9E-09 45.6 4.3 32 2-33 3-34 (288)
322 PRK07818 dihydrolipoamide dehy 97.3 0.00052 1.1E-08 48.1 5.0 34 2-35 174-207 (466)
323 TIGR01421 gluta_reduc_1 glutat 97.3 0.00054 1.2E-08 47.8 5.0 35 2-36 168-202 (450)
324 PRK06370 mercuric reductase; V 97.3 0.00059 1.3E-08 47.8 5.2 35 2-36 173-207 (463)
325 PRK06115 dihydrolipoamide dehy 97.3 0.00056 1.2E-08 48.0 5.1 35 2-36 176-210 (466)
326 TIGR01470 cysG_Nterm siroheme 97.3 0.00064 1.4E-08 42.6 4.8 32 2-33 11-42 (205)
327 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.00055 1.2E-08 47.4 5.0 34 2-35 139-172 (427)
328 PRK05249 soluble pyridine nucl 97.3 0.00058 1.3E-08 47.7 5.0 35 2-36 177-211 (461)
329 PRK07066 3-hydroxybutyryl-CoA 97.3 0.00051 1.1E-08 45.9 4.5 32 2-33 9-40 (321)
330 KOG1439 RAB proteins geranylge 97.3 0.00013 2.9E-09 49.4 1.5 44 1-44 5-48 (440)
331 PF01488 Shikimate_DH: Shikima 97.3 0.00098 2.1E-08 38.9 4.9 31 2-32 14-45 (135)
332 PRK06522 2-dehydropantoate 2-r 97.2 0.00069 1.5E-08 44.7 4.7 32 1-32 1-32 (304)
333 PRK06292 dihydrolipoamide dehy 97.2 0.00082 1.8E-08 47.0 5.3 35 2-36 171-205 (460)
334 PRK07819 3-hydroxybutyryl-CoA 97.2 0.00058 1.2E-08 44.9 4.3 33 2-34 7-39 (286)
335 TIGR03452 mycothione_red mycot 97.2 0.00073 1.6E-08 47.2 5.0 34 2-35 171-204 (452)
336 PRK13512 coenzyme A disulfide 97.2 0.00066 1.4E-08 47.3 4.8 35 2-36 150-184 (438)
337 PRK07530 3-hydroxybutyryl-CoA 97.2 0.0006 1.3E-08 44.9 4.4 32 2-33 6-37 (292)
338 PF13241 NAD_binding_7: Putati 97.2 0.00042 9E-09 38.6 3.0 31 2-32 9-39 (103)
339 PRK06327 dihydrolipoamide dehy 97.2 0.0008 1.7E-08 47.3 5.0 34 2-35 185-218 (475)
340 PRK12921 2-dehydropantoate 2-r 97.2 0.00077 1.7E-08 44.6 4.7 31 1-31 1-31 (305)
341 PRK06719 precorrin-2 dehydroge 97.2 0.0009 2E-08 40.2 4.5 30 2-31 15-44 (157)
342 PRK05708 2-dehydropantoate 2-r 97.2 0.00078 1.7E-08 44.7 4.6 32 1-32 3-34 (305)
343 PRK06035 3-hydroxyacyl-CoA deh 97.2 0.00071 1.5E-08 44.6 4.3 32 2-33 5-36 (291)
344 TIGR00518 alaDH alanine dehydr 97.2 0.00077 1.7E-08 45.9 4.5 32 2-33 169-200 (370)
345 PRK09424 pntA NAD(P) transhydr 97.2 0.00071 1.5E-08 47.8 4.3 32 2-33 167-198 (509)
346 PRK06249 2-dehydropantoate 2-r 97.1 0.0011 2.3E-08 44.2 4.8 32 2-33 7-38 (313)
347 cd00401 AdoHcyase S-adenosyl-L 97.1 0.00095 2.1E-08 46.1 4.7 32 2-33 204-235 (413)
348 cd05292 LDH_2 A subgroup of L- 97.1 0.0011 2.4E-08 44.1 4.9 33 1-33 1-35 (308)
349 PRK06718 precorrin-2 dehydroge 97.1 0.0012 2.5E-08 41.4 4.6 31 2-32 12-42 (202)
350 PF01262 AlaDh_PNT_C: Alanine 97.1 0.0014 3.1E-08 39.7 4.8 32 2-33 22-53 (168)
351 PRK05808 3-hydroxybutyryl-CoA 97.1 0.0011 2.3E-08 43.6 4.3 32 2-33 5-36 (282)
352 TIGR01424 gluta_reduc_2 glutat 97.1 0.0014 2.9E-08 45.8 5.0 34 2-35 168-201 (446)
353 TIGR02354 thiF_fam2 thiamine b 97.1 0.0016 3.6E-08 40.6 4.7 31 2-32 23-54 (200)
354 PRK07845 flavoprotein disulfid 97.0 0.0017 3.7E-08 45.6 5.3 36 2-37 179-214 (466)
355 PF02254 TrkA_N: TrkA-N domain 97.0 0.0017 3.7E-08 36.6 4.4 31 3-33 1-31 (116)
356 PRK08010 pyridine nucleotide-d 97.0 0.0017 3.6E-08 45.3 5.1 35 2-36 160-194 (441)
357 TIGR02374 nitri_red_nirB nitri 97.0 0.0013 2.8E-08 49.1 4.7 34 2-35 142-175 (785)
358 PRK04148 hypothetical protein; 97.0 0.00098 2.1E-08 38.8 3.3 32 2-34 19-50 (134)
359 PRK09564 coenzyme A disulfide 97.0 0.0016 3.5E-08 45.3 5.0 34 2-35 151-184 (444)
360 PTZ00058 glutathione reductase 97.0 0.0016 3.4E-08 46.9 4.8 34 2-35 239-272 (561)
361 PRK14620 NAD(P)H-dependent gly 97.0 0.0018 3.8E-08 43.4 4.8 33 1-33 1-33 (326)
362 PRK06116 glutathione reductase 97.0 0.0018 4E-08 45.2 5.0 34 2-35 169-202 (450)
363 TIGR03140 AhpF alkyl hydropero 97.0 0.0016 3.4E-08 46.4 4.7 34 2-35 354-387 (515)
364 PTZ00153 lipoamide dehydrogena 97.0 0.0017 3.8E-08 47.4 4.9 35 2-36 314-348 (659)
365 PRK14694 putative mercuric red 97.0 0.0021 4.6E-08 45.1 5.2 32 2-33 180-211 (468)
366 PRK14989 nitrite reductase sub 97.0 0.0016 3.6E-08 48.9 4.8 34 2-35 147-180 (847)
367 PLN02507 glutathione reductase 97.0 0.0019 4.1E-08 45.8 4.9 34 2-35 205-238 (499)
368 PRK08229 2-dehydropantoate 2-r 97.0 0.0018 4E-08 43.5 4.7 32 2-33 4-35 (341)
369 COG4716 Myosin-crossreactive a 97.0 0.00026 5.6E-09 48.0 0.6 41 3-43 25-69 (587)
370 TIGR03026 NDP-sugDHase nucleot 97.0 0.0015 3.2E-08 45.2 4.2 34 1-34 1-34 (411)
371 PRK06130 3-hydroxybutyryl-CoA 96.9 0.0019 4E-08 43.0 4.5 32 2-33 6-37 (311)
372 PF00670 AdoHcyase_NAD: S-aden 96.9 0.0019 4.2E-08 38.8 4.1 33 2-34 25-57 (162)
373 PRK11064 wecC UDP-N-acetyl-D-m 96.9 0.0016 3.5E-08 45.1 4.3 32 2-33 5-36 (415)
374 PF13478 XdhC_C: XdhC Rossmann 96.9 0.0017 3.6E-08 38.0 3.7 32 3-34 1-32 (136)
375 COG1004 Ugd Predicted UDP-gluc 96.9 0.0019 4.1E-08 44.1 4.3 33 1-33 1-33 (414)
376 TIGR01316 gltA glutamate synth 96.9 0.0021 4.6E-08 44.9 4.7 32 2-33 274-305 (449)
377 PRK14618 NAD(P)H-dependent gly 96.9 0.002 4.4E-08 43.2 4.4 32 2-33 6-37 (328)
378 PRK13748 putative mercuric red 96.9 0.0023 5E-08 45.9 5.0 32 2-33 272-303 (561)
379 PF00899 ThiF: ThiF family; I 96.9 0.0027 5.9E-08 37.0 4.5 32 2-33 4-36 (135)
380 PRK14619 NAD(P)H-dependent gly 96.9 0.0025 5.5E-08 42.4 4.8 32 2-33 6-37 (308)
381 PRK00094 gpsA NAD(P)H-dependen 96.9 0.0022 4.7E-08 42.8 4.5 32 2-33 3-34 (325)
382 PLN02545 3-hydroxybutyryl-CoA 96.9 0.002 4.4E-08 42.5 4.3 32 2-33 6-37 (295)
383 PRK12475 thiamine/molybdopteri 96.9 0.0025 5.4E-08 43.0 4.7 32 2-33 26-58 (338)
384 TIGR00936 ahcY adenosylhomocys 96.9 0.0024 5.3E-08 44.0 4.6 32 2-33 197-228 (406)
385 PLN02546 glutathione reductase 96.8 0.0025 5.5E-08 45.8 4.8 34 2-35 254-287 (558)
386 PTZ00052 thioredoxin reductase 96.8 0.0027 5.9E-08 45.0 5.0 31 2-32 184-214 (499)
387 PRK07417 arogenate dehydrogena 96.8 0.0023 4.9E-08 42.0 4.3 33 1-33 1-33 (279)
388 TIGR03143 AhpF_homolog putativ 96.8 0.0023 4.9E-08 46.0 4.6 33 2-34 145-177 (555)
389 PRK15317 alkyl hydroperoxide r 96.8 0.0024 5.2E-08 45.5 4.7 34 2-35 353-386 (517)
390 PRK12549 shikimate 5-dehydroge 96.8 0.0027 5.8E-08 41.8 4.5 32 2-33 129-161 (284)
391 cd01080 NAD_bind_m-THF_DH_Cycl 96.8 0.0035 7.5E-08 38.1 4.7 31 2-32 46-77 (168)
392 COG1748 LYS9 Saccharopine dehy 96.8 0.0028 6.1E-08 43.4 4.7 32 1-32 2-34 (389)
393 COG1252 Ndh NADH dehydrogenase 96.8 0.0023 4.9E-08 44.1 4.2 60 2-78 157-229 (405)
394 TIGR01438 TGR thioredoxin and 96.8 0.0026 5.7E-08 44.9 4.7 31 2-32 182-212 (484)
395 PF03446 NAD_binding_2: NAD bi 96.8 0.0029 6.3E-08 38.1 4.3 32 2-33 3-34 (163)
396 PRK10262 thioredoxin reductase 96.8 0.003 6.5E-08 42.1 4.7 34 2-35 148-181 (321)
397 PRK12831 putative oxidoreducta 96.8 0.0027 6E-08 44.6 4.6 32 2-33 283-314 (464)
398 PRK14727 putative mercuric red 96.8 0.0036 7.7E-08 44.2 5.1 31 2-32 190-220 (479)
399 TIGR01423 trypano_reduc trypan 96.8 0.0032 7E-08 44.5 4.8 35 2-36 189-226 (486)
400 PRK07688 thiamine/molybdopteri 96.8 0.0035 7.5E-08 42.3 4.8 31 2-32 26-57 (339)
401 PRK08306 dipicolinate synthase 96.8 0.0032 7E-08 41.7 4.5 32 2-33 154-185 (296)
402 TIGR00561 pntA NAD(P) transhyd 96.7 0.003 6.5E-08 44.8 4.4 32 2-33 166-197 (511)
403 PRK07531 bifunctional 3-hydrox 96.7 0.003 6.5E-08 44.8 4.4 32 2-33 6-37 (495)
404 PRK12770 putative glutamate sy 96.7 0.0035 7.7E-08 42.4 4.6 32 2-33 174-206 (352)
405 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.0044 9.6E-08 38.7 4.7 32 2-33 30-61 (200)
406 PRK02472 murD UDP-N-acetylmura 96.7 0.0035 7.6E-08 43.7 4.6 32 2-33 7-38 (447)
407 KOG3851 Sulfide:quinone oxidor 96.7 0.002 4.4E-08 42.9 3.1 34 1-34 40-75 (446)
408 COG0686 Ald Alanine dehydrogen 96.7 0.0021 4.5E-08 42.6 3.1 70 2-71 170-258 (371)
409 PF00056 Ldh_1_N: lactate/mala 96.7 0.0065 1.4E-07 35.8 5.0 33 1-33 1-36 (141)
410 cd01487 E1_ThiF_like E1_ThiF_l 96.7 0.0055 1.2E-07 37.4 4.8 32 2-33 1-33 (174)
411 PRK01710 murD UDP-N-acetylmura 96.7 0.0038 8.2E-08 43.8 4.6 32 2-33 16-47 (458)
412 TIGR02853 spore_dpaA dipicolin 96.7 0.0041 8.9E-08 41.0 4.5 33 2-34 153-185 (287)
413 TIGR01292 TRX_reduct thioredox 96.6 0.0046 1E-07 40.5 4.6 33 2-34 143-175 (300)
414 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.6 0.0037 8E-08 44.4 4.3 32 2-33 7-38 (503)
415 TIGR01915 npdG NADPH-dependent 96.6 0.0053 1.2E-07 38.8 4.7 33 1-33 1-34 (219)
416 cd05291 HicDH_like L-2-hydroxy 96.6 0.005 1.1E-07 41.0 4.8 33 2-34 2-36 (306)
417 cd01483 E1_enzyme_family Super 96.6 0.0062 1.3E-07 35.8 4.7 32 2-33 1-33 (143)
418 PRK09496 trkA potassium transp 96.6 0.0042 9.1E-08 43.4 4.5 33 1-33 1-33 (453)
419 PRK04308 murD UDP-N-acetylmura 96.6 0.0053 1.1E-07 42.9 5.0 33 2-34 7-39 (445)
420 COG1063 Tdh Threonine dehydrog 96.6 0.0041 9E-08 42.1 4.3 32 2-33 171-203 (350)
421 PRK06223 malate dehydrogenase; 96.6 0.0058 1.2E-07 40.6 4.9 32 2-33 4-36 (307)
422 PRK03369 murD UDP-N-acetylmura 96.6 0.0041 8.9E-08 44.0 4.4 31 2-32 14-44 (488)
423 PRK05476 S-adenosyl-L-homocyst 96.6 0.0048 1E-07 42.9 4.6 32 2-33 214-245 (425)
424 TIGR02355 moeB molybdopterin s 96.6 0.0063 1.4E-07 39.1 4.9 31 2-32 26-57 (240)
425 cd05311 NAD_bind_2_malic_enz N 96.6 0.0053 1.2E-07 39.1 4.5 31 2-32 27-60 (226)
426 TIGR01763 MalateDH_bact malate 96.6 0.0064 1.4E-07 40.5 5.0 32 2-33 3-35 (305)
427 PTZ00082 L-lactate dehydrogena 96.6 0.0065 1.4E-07 40.7 5.0 33 2-34 8-41 (321)
428 TIGR02356 adenyl_thiF thiazole 96.6 0.0061 1.3E-07 38.1 4.6 31 2-32 23-54 (202)
429 PRK08328 hypothetical protein; 96.6 0.0067 1.5E-07 38.8 4.8 31 2-32 29-60 (231)
430 PRK15116 sulfur acceptor prote 96.6 0.0069 1.5E-07 39.6 4.9 32 2-33 32-64 (268)
431 TIGR01505 tartro_sem_red 2-hyd 96.6 0.0045 9.8E-08 40.8 4.2 32 2-33 1-32 (291)
432 PRK05690 molybdopterin biosynt 96.6 0.0065 1.4E-07 39.2 4.8 31 2-32 34-65 (245)
433 PLN02494 adenosylhomocysteinas 96.5 0.006 1.3E-07 42.8 4.7 33 2-34 256-288 (477)
434 PRK11730 fadB multifunctional 96.5 0.0042 9E-08 46.0 4.2 33 2-34 315-347 (715)
435 KOG3923 D-aspartate oxidase [A 96.5 0.0035 7.5E-08 41.3 3.3 31 1-31 4-41 (342)
436 PRK08268 3-hydroxy-acyl-CoA de 96.5 0.0048 1E-07 43.9 4.3 33 2-34 9-41 (507)
437 PRK10669 putative cation:proto 96.5 0.005 1.1E-07 44.3 4.4 33 2-34 419-451 (558)
438 PRK12548 shikimate 5-dehydroge 96.5 0.0071 1.5E-07 39.9 4.8 32 2-33 128-160 (289)
439 COG1893 ApbA Ketopantoate redu 96.5 0.0056 1.2E-07 40.8 4.2 33 1-33 1-33 (307)
440 PRK08644 thiamine biosynthesis 96.5 0.0094 2E-07 37.6 4.9 31 2-32 30-61 (212)
441 KOG2755 Oxidoreductase [Genera 96.4 0.0032 7E-08 40.8 2.8 33 3-35 2-36 (334)
442 PRK11749 dihydropyrimidine deh 96.4 0.0072 1.6E-07 42.4 4.7 32 2-33 275-307 (457)
443 COG2509 Uncharacterized FAD-de 96.4 0.0051 1.1E-07 42.7 3.9 33 1-33 19-56 (486)
444 TIGR02437 FadB fatty oxidation 96.4 0.0053 1.2E-07 45.4 4.2 32 2-33 315-346 (714)
445 TIGR02964 xanthine_xdhC xanthi 96.4 0.0082 1.8E-07 38.7 4.6 33 2-34 102-134 (246)
446 cd01339 LDH-like_MDH L-lactate 96.4 0.0066 1.4E-07 40.3 4.3 31 3-33 1-32 (300)
447 PRK15057 UDP-glucose 6-dehydro 96.4 0.0062 1.3E-07 41.9 4.2 31 2-33 2-32 (388)
448 PLN02353 probable UDP-glucose 96.4 0.0068 1.5E-07 42.8 4.5 33 1-33 2-36 (473)
449 COG3486 IucD Lysine/ornithine 96.4 0.018 3.9E-07 39.6 6.2 33 1-33 6-39 (436)
450 cd00757 ThiF_MoeB_HesA_family 96.4 0.01 2.2E-07 37.8 4.8 31 2-32 23-54 (228)
451 PTZ00318 NADH dehydrogenase-li 96.4 0.0087 1.9E-07 41.6 4.8 34 2-35 175-222 (424)
452 PRK08223 hypothetical protein; 96.3 0.01 2.2E-07 39.2 4.7 31 2-32 29-60 (287)
453 PTZ00117 malate dehydrogenase; 96.3 0.011 2.4E-07 39.7 4.9 32 2-33 7-39 (319)
454 PRK00141 murD UDP-N-acetylmura 96.3 0.0081 1.8E-07 42.4 4.5 31 2-32 17-47 (473)
455 PRK00683 murD UDP-N-acetylmura 96.3 0.0086 1.9E-07 41.6 4.5 32 2-33 5-36 (418)
456 PRK12778 putative bifunctional 96.3 0.0087 1.9E-07 44.6 4.7 32 2-33 572-604 (752)
457 PRK03803 murD UDP-N-acetylmura 96.3 0.009 2E-07 41.8 4.6 31 3-33 9-39 (448)
458 COG0771 MurD UDP-N-acetylmuram 96.3 0.0079 1.7E-07 42.0 4.2 34 2-35 9-42 (448)
459 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.011 2.4E-07 36.6 4.6 31 2-32 30-61 (194)
460 PRK04690 murD UDP-N-acetylmura 96.3 0.0084 1.8E-07 42.3 4.4 31 2-32 10-40 (468)
461 TIGR00507 aroE shikimate 5-deh 96.3 0.011 2.3E-07 38.7 4.6 32 2-33 119-150 (270)
462 PRK05562 precorrin-2 dehydroge 96.3 0.011 2.4E-07 37.5 4.5 30 2-31 27-56 (223)
463 PRK09496 trkA potassium transp 96.3 0.0091 2E-07 41.7 4.5 33 2-34 233-265 (453)
464 PF02826 2-Hacid_dh_C: D-isome 96.3 0.015 3.3E-07 35.6 5.0 33 2-34 38-70 (178)
465 PRK12550 shikimate 5-dehydroge 96.3 0.011 2.3E-07 38.8 4.5 32 2-33 124-156 (272)
466 TIGR02441 fa_ox_alpha_mit fatt 96.2 0.0073 1.6E-07 44.9 4.1 32 2-33 337-368 (737)
467 PRK07502 cyclohexadienyl dehyd 96.2 0.0087 1.9E-07 39.8 4.1 32 2-33 8-41 (307)
468 TIGR03736 PRTRC_ThiF PRTRC sys 96.2 0.012 2.6E-07 37.9 4.5 32 1-32 12-54 (244)
469 cd01484 E1-2_like Ubiquitin ac 96.2 0.014 3E-07 37.4 4.8 32 2-33 1-33 (234)
470 cd05191 NAD_bind_amino_acid_DH 96.2 0.016 3.6E-07 31.0 4.5 30 2-31 25-55 (86)
471 PRK00066 ldh L-lactate dehydro 96.2 0.014 3.1E-07 39.1 5.0 32 2-33 8-41 (315)
472 PRK14027 quinate/shikimate deh 96.2 0.013 2.9E-07 38.6 4.7 32 2-33 129-161 (283)
473 PRK11559 garR tartronate semia 96.2 0.011 2.4E-07 39.0 4.4 32 2-33 4-35 (296)
474 TIGR00872 gnd_rel 6-phosphoglu 96.2 0.011 2.4E-07 39.2 4.3 33 1-33 1-33 (298)
475 cd05290 LDH_3 A subgroup of L- 96.2 0.015 3.2E-07 38.8 4.9 32 2-33 1-34 (307)
476 PTZ00075 Adenosylhomocysteinas 96.2 0.013 2.8E-07 41.2 4.8 32 2-33 256-287 (476)
477 TIGR01809 Shik-DH-AROM shikima 96.2 0.014 3E-07 38.5 4.7 32 2-33 127-159 (282)
478 PRK15461 NADH-dependent gamma- 96.1 0.012 2.5E-07 39.1 4.3 32 2-33 3-34 (296)
479 PRK02006 murD UDP-N-acetylmura 96.1 0.011 2.4E-07 42.0 4.4 32 2-33 9-40 (498)
480 PRK00258 aroE shikimate 5-dehy 96.1 0.015 3.2E-07 38.3 4.6 32 2-33 125-157 (278)
481 PRK11154 fadJ multifunctional 96.1 0.0096 2.1E-07 44.1 4.1 32 2-33 311-343 (708)
482 TIGR02440 FadJ fatty oxidation 96.1 0.01 2.3E-07 43.9 4.3 32 2-33 306-338 (699)
483 cd05293 LDH_1 A subgroup of L- 96.1 0.017 3.6E-07 38.7 4.9 32 2-33 5-38 (312)
484 PRK03562 glutathione-regulated 96.1 0.011 2.4E-07 43.1 4.3 33 2-34 402-434 (621)
485 PLN02520 bifunctional 3-dehydr 96.1 0.013 2.9E-07 41.9 4.6 31 2-32 381-411 (529)
486 KOG2304 3-hydroxyacyl-CoA dehy 96.0 0.0092 2E-07 38.0 3.2 34 2-35 13-46 (298)
487 PRK06153 hypothetical protein; 96.0 0.013 2.7E-07 40.2 4.1 31 2-32 178-209 (393)
488 PRK05597 molybdopterin biosynt 96.0 0.018 3.9E-07 39.2 4.9 31 2-32 30-61 (355)
489 cd00755 YgdL_like Family of ac 96.0 0.018 4E-07 36.8 4.6 31 2-32 13-44 (231)
490 PRK03659 glutathione-regulated 96.0 0.013 2.9E-07 42.6 4.4 33 2-34 402-434 (601)
491 cd01486 Apg7 Apg7 is an E1-lik 96.0 0.018 3.8E-07 38.3 4.6 31 2-32 1-32 (307)
492 PRK00421 murC UDP-N-acetylmura 96.0 0.012 2.6E-07 41.4 4.1 32 2-33 9-41 (461)
493 PRK12480 D-lactate dehydrogena 96.0 0.019 4.1E-07 38.7 4.8 32 2-33 148-179 (330)
494 PRK05600 thiamine biosynthesis 96.0 0.018 4E-07 39.4 4.7 31 2-32 43-74 (370)
495 cd01485 E1-1_like Ubiquitin ac 96.0 0.023 5E-07 35.5 4.8 31 2-32 21-52 (198)
496 TIGR03376 glycerol3P_DH glycer 96.0 0.018 3.8E-07 39.0 4.6 30 2-31 1-38 (342)
497 PRK01390 murD UDP-N-acetylmura 95.9 0.014 3E-07 41.0 4.2 31 2-32 11-41 (460)
498 cd01492 Aos1_SUMO Ubiquitin ac 95.9 0.026 5.6E-07 35.2 4.9 31 2-32 23-54 (197)
499 cd01065 NAD_bind_Shikimate_DH 95.9 0.02 4.3E-07 34.0 4.3 32 2-33 21-53 (155)
500 PRK11199 tyrA bifunctional cho 95.9 0.016 3.4E-07 39.8 4.3 32 2-33 100-132 (374)
No 1
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.87 E-value=2.3e-21 Score=125.30 Aligned_cols=125 Identities=49% Similarity=0.764 Sum_probs=113.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc----cCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI----DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.+|+|||+|++||+||..|++. .+|++||.+...||++.|... +|..++.|..++++..+++..++++.+|.+.+
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~ 87 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK 87 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence 3799999999999999999876 899999999999999999953 56789999999999899999999999999999
Q ss_pred eccceeeEEccCCCeeeeCCCCCcchhhhccccccChhHHHHHHHHHhhhc
Q 037740 77 SSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKD 127 (130)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (130)
...+.|++..+. ..+.|+.--+...++.+.....+|.|++|++++++|.+
T Consensus 88 as~Msf~v~~d~-gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r 137 (447)
T COG2907 88 ASFMSFSVSLDM-GGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYR 137 (447)
T ss_pred ccceeEEEEecC-CceeeccCCCccchhhccccccchhHHHHHHHHHHHhh
Confidence 988999988776 55788887778889999999999999999999999988
No 2
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.77 E-value=1.6e-18 Score=89.42 Aligned_cols=67 Identities=46% Similarity=0.780 Sum_probs=58.3
Q ss_pred EEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCC-CChhHHHHHHHc
Q 037740 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA-TSPNTMEFFDSL 71 (130)
Q Consensus 5 IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~ 71 (130)
|||+|++||++|+.|++.|++|+|+|+++.+||++++...++..++.|++.+... ...+..++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999999999888763 467777777754
No 3
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=1.6e-16 Score=109.91 Aligned_cols=69 Identities=41% Similarity=0.718 Sum_probs=59.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLG 72 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g 72 (130)
+||+|||||+.||+||..|+++|++|+|+||+..+||++++...+|+.++.|.+++...... .+++.++
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~---~~~~~l~ 72 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG---PLFRELG 72 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH---HHHHHhc
Confidence 69999999999999999999999999999999999999999999999999998776543232 3444444
No 4
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=2.9e-16 Score=108.24 Aligned_cols=79 Identities=30% Similarity=0.499 Sum_probs=70.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcc-cccccccccCCCChhHHHHHHHcCCCceecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLGFTLFNHATSPNTMEFFDSLGVDMKSSD 79 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~ 79 (130)
++|+|||||++||+||..|.+.|++|+|+|..+++||+..+....+.. ++.|++++.+.....+.-+.+++|++.....
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~~~~ 95 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELYKVR 95 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccceec
Confidence 479999999999999999999999999999999999999999997665 9999999998766667778899998776543
No 5
>PLN02268 probable polyamine oxidase
Probab=99.68 E-value=3.4e-16 Score=107.05 Aligned_cols=77 Identities=31% Similarity=0.475 Sum_probs=67.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCC-CChhHHHHHHHcCCCcee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA-TSPNTMEFFDSLGVDMKS 77 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~ 77 (130)
.+|+|||||++||+||+.|.+.|++|+|+|+++++||++.+....|+.+|.|+.+++.. ....+.++++++|++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~ 78 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYR 78 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEe
Confidence 47999999999999999999999999999999999999999887788899999988753 233477899999986543
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.67 E-value=3.6e-16 Score=107.63 Aligned_cols=75 Identities=33% Similarity=0.574 Sum_probs=68.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.||+|||||++||+||+.|+++ |++|+|+|+++.+||++++...+|+.+|.|.+++... ..++.++++++|+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~-~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLER-KKSAPDLVKDLGLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccC-ChHHHHHHHHcCCCcc
Confidence 4899999999999999999998 9999999999999999999999899999999998864 5668899999998654
No 7
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.66 E-value=1.6e-15 Score=105.32 Aligned_cols=74 Identities=28% Similarity=0.409 Sum_probs=61.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCC---Chh-HHHHHHHcCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT---SPN-TMEFFDSLGVD 74 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~~~~g~~ 74 (130)
|||+|||+|++||++|..|+++|++|+|+||++.+||+++++..+|+.++.|.+.+.... ..+ ..+.++.++..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRK 78 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCc
Confidence 799999999999999999999999999999999999999999999999999998765321 222 33455666543
No 8
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.65 E-value=1.4e-15 Score=105.80 Aligned_cols=70 Identities=39% Similarity=0.557 Sum_probs=61.0
Q ss_pred EEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCC
Q 037740 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVD 74 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ 74 (130)
|+|||||++||+||..|+++|++|+|+|+++.+||+++++..+|+.++.|.+++.. .....++++.+|++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~--~~~~~~l~~~lg~~ 70 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM--PEALEELFALAGRD 70 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc--ccHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999988753 23344567777753
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.65 E-value=4.6e-16 Score=106.69 Aligned_cols=75 Identities=39% Similarity=0.698 Sum_probs=66.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.+|+|||||++||+||+.|++.| ++|+|+|+++.+||++.+...+|..+|.|++.+... ..++.++++++|+...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~ 77 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLAR-KPSAPALVKELGLEDE 77 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCC-cHHHHHHHHHcCCccc
Confidence 47999999999999999999987 899999999999999999999999999999876643 4568899999998643
No 10
>PRK07233 hypothetical protein; Provisional
Probab=99.63 E-value=1.3e-15 Score=104.00 Aligned_cols=74 Identities=35% Similarity=0.692 Sum_probs=66.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+|+|||||++||+||+.|++.|++|+|+|+++.+||++.+...+|+.++.|.+.+.. ...++.++++++|+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~-~~~~~~~l~~~lg~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK-SDEALLELLDELGLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc-ccHHHHHHHHHcCCCCc
Confidence 689999999999999999999999999999999999999999988889998887754 35778899999997644
No 11
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.63 E-value=1.3e-15 Score=105.03 Aligned_cols=75 Identities=29% Similarity=0.526 Sum_probs=66.5
Q ss_pred cEEEEccCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740 2 QVAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM 75 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~------g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 75 (130)
+|+|||||++||+||+.|++. |.+|+|+|+++++||+++|....|+.+|.|++++... ..++.++++++|++.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~-~~~~~~l~~~lgl~~ 81 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVAR-NEHVMPLVKDLNLEE 81 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcC-CHHHHHHHHHcCCcc
Confidence 699999999999999999986 3799999999999999999999889999999888653 567889999999865
Q ss_pred ee
Q 037740 76 KS 77 (130)
Q Consensus 76 ~~ 77 (130)
..
T Consensus 82 ~~ 83 (463)
T PRK12416 82 EM 83 (463)
T ss_pred ce
Confidence 43
No 12
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.63 E-value=1.6e-15 Score=102.85 Aligned_cols=77 Identities=39% Similarity=0.711 Sum_probs=70.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSS 78 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 78 (130)
..++|||||++||+||+.|++.+ .+++|||+++.+||..+|+..+|+.++.|.+.+... ..+++++++++|++....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-KEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-hHHHHHHHHHhCcHHhhc
Confidence 36899999999999999999998 899999999999999999999999999999888765 488899999999977654
No 13
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.62 E-value=4.1e-15 Score=98.88 Aligned_cols=125 Identities=26% Similarity=0.401 Sum_probs=91.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcE--EEEecCCCCCCCeeeecc-cCcccccccccccCCCC--hhHHHHHHHcCCCc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDV--VLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATS--PNTMEFFDSLGVDM 75 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v--~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~--~~~~~~~~~~g~~~ 75 (130)
.+|+|+|||++||++|++|++.+.++ +++|..+++||+.++... .++.++-|...+.++.. .+++.+++++|++.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~ 91 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLED 91 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccc
Confidence 37999999999999999999997654 569999999999999333 56889999999988655 46788999999987
Q ss_pred eeccceeeEEccCCCeeeeCC-----CCCcch-hhhccccccChhHHHHHHHHHhh
Q 037740 76 KSSDMSFSVSLDKGQGFEWGT-----RNGFSS-LFAQKKNLLNPYFWQMLWEINKF 125 (130)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 125 (130)
+...++.......++...+.. ++.+.. ++....+...|.++.|+.++++-
T Consensus 92 e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~ 147 (491)
T KOG1276|consen 92 ELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRK 147 (491)
T ss_pred eeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccc
Confidence 766555443333333333322 233333 44555677778888888888765
No 14
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.62 E-value=1.9e-15 Score=104.88 Aligned_cols=75 Identities=36% Similarity=0.528 Sum_probs=64.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCC-hhHHHHHHHcCCCc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS-PNTMEFFDSLGVDM 75 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~g~~~ 75 (130)
.||+|||+|++||+||..|+++|++|+|+|+++.+||+++++..+|+.++.|.+++..... .....+++++|+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~ 77 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPL 77 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCC
Confidence 3899999999999999999999999999999999999999999999999999988764222 22345678888753
No 15
>PLN02568 polyamine oxidase
Probab=99.59 E-value=7.5e-15 Score=102.54 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=67.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-----CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-----VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM 75 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-----~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 75 (130)
.||+|||+|++||+||..|++.| ++|+|+|+++.+||++.+....+..++.|++++.+.....+.++++++|+..
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~ 85 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLE 85 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCcc
Confidence 47999999999999999999887 8999999999999999999998899999999998766666778999999744
No 16
>PRK07208 hypothetical protein; Provisional
Probab=99.59 E-value=7.7e-15 Score=101.54 Aligned_cols=72 Identities=32% Similarity=0.566 Sum_probs=65.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGV 73 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~ 73 (130)
.||+|||||++||+||+.|+++|++|+|+|+.+.+||++.+....++.++.|.+++.. ...+..+++++++.
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~-~~~~~~~l~~~l~~ 76 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS-KSPEVMDLWNEILP 76 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc-CCHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999998888899999987764 36778899999985
No 17
>PLN02576 protoporphyrinogen oxidase
Probab=99.58 E-value=8.6e-15 Score=101.68 Aligned_cols=73 Identities=37% Similarity=0.620 Sum_probs=62.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM 75 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 75 (130)
+||+|||||++||+||+.|++. |++|+|+|+.+.+||++.+...+|+.++.|.+++... ......+++. |+..
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~-~~~~~~l~~~-gl~~ 86 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPS-DPELTSAVDS-GLRD 86 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccC-cHHHHHHHHc-CChh
Confidence 5899999999999999999999 9999999999999999999999999999999888742 3444455554 6643
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.56 E-value=2.1e-14 Score=98.85 Aligned_cols=74 Identities=32% Similarity=0.557 Sum_probs=64.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-ccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+|+|||+|++||+||+.|+++|++|+|+|+.+.+||++.++. .++..++.|.+++... ++++.++++++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA-YPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccC-CchHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999998874 4678889999887743 5678899999998643
No 19
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.53 E-value=6.9e-14 Score=88.43 Aligned_cols=74 Identities=31% Similarity=0.530 Sum_probs=61.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHH---HHHHcCCCce
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTME---FFDSLGVDMK 76 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~g~~~~ 76 (130)
+|+|||+|++|++||+.|+..|.+|+||||..-+||+..|...++..++.|+..+... ..-+.+ .+.+-|+...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~-~~~F~~~Ve~~~~~glV~~ 79 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPR-DELFLRAVEALRDDGLVDV 79 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCC-chHHHHHHHHHHhCCceee
Confidence 6999999999999999999999999999999999999999999888899999988763 233444 4444455443
No 20
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3.3e-14 Score=96.69 Aligned_cols=75 Identities=37% Similarity=0.641 Sum_probs=66.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.+|+|+|||+|||+||++|+++|++|+|+|+.+.+||-+.++.. +|...|.|.+.+.+ .+.++++++++++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~-~Y~n~~~ll~~~~~~~~ 76 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG-CYYNLLTLLKELPIEDR 76 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEech-hHHHHHHHhhhCCchhe
Confidence 47999999999999999999999999999999999998887776 67889999999885 47788899998887643
No 21
>PLN02676 polyamine oxidase
Probab=99.51 E-value=8.9e-14 Score=96.36 Aligned_cols=77 Identities=27% Similarity=0.516 Sum_probs=67.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCeeeecccCcccccccccccC---CCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH---ATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||+|++||+||..|++.|. +|+|+|+.+.+||++.+....+..++.|++++.. .......++.+++|+...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~ 106 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTF 106 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCcee
Confidence 589999999999999999999998 6999999999999999988888889999998864 345567788899998655
Q ss_pred e
Q 037740 77 S 77 (130)
Q Consensus 77 ~ 77 (130)
.
T Consensus 107 ~ 107 (487)
T PLN02676 107 Y 107 (487)
T ss_pred e
Confidence 4
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.50 E-value=1.4e-13 Score=99.27 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=66.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCc----ccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV----DLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.+|+|||+|++||+||+.|.+.|++|+|+|++..+||+..+....+. .++.|+++++......+..+.+++|++..
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~ 318 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH 318 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence 37999999999999999999999999999999999999999887543 57889999887654556678899998765
Q ss_pred ecc
Q 037740 77 SSD 79 (130)
Q Consensus 77 ~~~ 79 (130)
..+
T Consensus 319 ~~~ 321 (808)
T PLN02328 319 KVR 321 (808)
T ss_pred ecC
Confidence 443
No 23
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.1e-13 Score=85.05 Aligned_cols=67 Identities=36% Similarity=0.601 Sum_probs=49.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCC-CChhHHHHHHHcCCCcee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA-TSPNTMEFFDSLGVDMKS 77 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~ 77 (130)
.||+|+|+||+||+||++|+++|++|+|||++-.+||..+ .|.+.++.. ...+...+++++|++.+.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRYEE 98 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCccee
Confidence 4899999999999999999999999999999988887322 233333331 123344567777776654
No 24
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.50 E-value=1.2e-13 Score=95.44 Aligned_cols=74 Identities=28% Similarity=0.586 Sum_probs=65.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-ccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+|+|||+|++||++|+.|++.|++|+|+|+++.+||++.++. ..|+.++.|.+++... +.+..++++++|+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~-~~~~~~~~~~lg~~~~ 75 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC-YANLFRLMKKVGAEDN 75 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc-hHHHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999998874 5688899999988753 5778899999998654
No 25
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.49 E-value=5.6e-14 Score=86.44 Aligned_cols=37 Identities=46% Similarity=0.772 Sum_probs=31.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+||+||+||++|++.|++|+++|++..+||
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 5999999999999999999999999999999888887
No 26
>PLN02529 lysine-specific histone demethylase 1
Probab=99.49 E-value=2.2e-13 Score=97.64 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=66.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc--C--cccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--G--VDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~--~--~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.||+|||+|++||+||..|++.|++|+|+|+.+.+||+..+...+ + ..++.|+++++......+..+.+++|++..
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~ 240 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH 240 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence 479999999999999999999999999999999999999998874 2 368999999987655556678889988665
Q ss_pred ec
Q 037740 77 SS 78 (130)
Q Consensus 77 ~~ 78 (130)
..
T Consensus 241 ~~ 242 (738)
T PLN02529 241 KV 242 (738)
T ss_pred cc
Confidence 43
No 27
>PLN02612 phytoene desaturase
Probab=99.47 E-value=2.2e-13 Score=95.94 Aligned_cols=75 Identities=35% Similarity=0.593 Sum_probs=66.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
++|+|||+|++||++|++|.+.|++|+|+|+++.+||+..++.. +|+.+|.|.+++... ++++.++++++|+...
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~-~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA-YPNVQNLFGELGINDR 169 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC-CchHHHHHHHhCCccc
Confidence 47999999999999999999999999999999999999988764 678899999988764 5578899999998554
No 28
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.45 E-value=4.1e-13 Score=90.24 Aligned_cols=77 Identities=31% Similarity=0.531 Sum_probs=67.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSS 78 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 78 (130)
.||+|+|+|++||++|++|.+.|++|+|+|.+++.||++.+....+...+.+...+++ .....+.+.+++|++....
T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~~f 84 (450)
T COG1231 8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLEPF 84 (450)
T ss_pred CcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCCce
Confidence 3899999999999999999999999999999999999999888877778888777776 5666788999999877654
No 29
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.45 E-value=4.5e-13 Score=90.33 Aligned_cols=71 Identities=31% Similarity=0.551 Sum_probs=65.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLG 72 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g 72 (130)
+|+|||||++||+||.+|-+.| .+++|+|..+++||+..+..+.+..++.|+.+.++......-++.+++|
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g 94 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYG 94 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhC
Confidence 5899999999999999999765 5899999999999999999998889999999999977777889999887
No 30
>PLN02487 zeta-carotene desaturase
Probab=99.42 E-value=1.1e-12 Score=92.16 Aligned_cols=75 Identities=27% Similarity=0.586 Sum_probs=66.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-ccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
++|+|||+|++||++|+.|.+.|++|+|+|+.+.+||...++. ..+..++.|.+++... +.+..++++++|+..+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~-~~~~~~ll~~LGl~~~ 151 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC-YNNLFRLMKKVGADEN 151 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC-cHHHHHHHHhcCCccc
Confidence 3799999999999999999999999999999999999988885 4678889999888753 5678899999998655
No 31
>PLN03000 amine oxidase
Probab=99.41 E-value=1.9e-12 Score=93.85 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=65.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc----CcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID----GVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.+|+|||+|++||++|..|.+.|++|+|+|+.+.+||++.+.... +..+|.|++++.......+..+++++|+...
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~ 264 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY 264 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence 379999999999999999999999999999999999999999874 3568999999987655555567899998654
No 32
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.38 E-value=2.6e-12 Score=86.27 Aligned_cols=70 Identities=20% Similarity=0.420 Sum_probs=55.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcc-cccccccccCCCChhHHHHHHHc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLGFTLFNHATSPNTMEFFDSL 71 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 71 (130)
+||+|||||++|+++|..|++.|.+|+|+|+.+.+||++.+....+.. .+.|.+.+.. ......+++..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t-~~~~v~~~~~~~ 72 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT-NNQYVWDYISPF 72 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec-CcHHHHHHHHhh
Confidence 699999999999999999999999999999999999998887665543 3667776653 245555665554
No 33
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.36 E-value=6.5e-12 Score=80.49 Aligned_cols=39 Identities=38% Similarity=0.703 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+|++||++|+.|++.|++|+|+||+..+||..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 699999999999999999999999999999998887643
No 34
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.35 E-value=1.7e-13 Score=90.46 Aligned_cols=75 Identities=32% Similarity=0.520 Sum_probs=59.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc----cccCCCChhHHH--HHHHcCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT----LFNHATSPNTME--FFDSLGVD 74 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~--~~~~~g~~ 74 (130)
||++|||+||+|..||+..++.|++++++|++..+|| .|++.||. +++.+...++++ .++..|++
T Consensus 40 ~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGG---------TcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~ 110 (506)
T KOG1335|consen 40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGG---------TCLNVGCIPSKALLNNSHLYHEAQHEDFASRGID 110 (506)
T ss_pred CCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCc---------eeeeccccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence 7999999999999999999999999999999999999 89999994 344444444442 56777887
Q ss_pred ceeccceeeE
Q 037740 75 MKSSDMSFSV 84 (130)
Q Consensus 75 ~~~~~~~~~~ 84 (130)
.....++.+.
T Consensus 111 vs~~~~dl~~ 120 (506)
T KOG1335|consen 111 VSSVSLDLQA 120 (506)
T ss_pred ccceecCHHH
Confidence 7655555443
No 35
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.35 E-value=6.1e-12 Score=80.77 Aligned_cols=38 Identities=47% Similarity=0.853 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|++|++||+.|++.|++|+|+|+.+.+||.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg 63 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG 63 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 69999999999999999999999999999998888764
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.34 E-value=3e-12 Score=85.00 Aligned_cols=76 Identities=29% Similarity=0.466 Sum_probs=55.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC--------CCeeeecccC---cccccc------cccccCCCChh
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG--------GHAKTITIDG---VDLDLG------FTLFNHATSPN 63 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g--------g~~~~~~~~~---~~~~~g------~~~~~~~~~~~ 63 (130)
+||+|||||++||.||..++++|.+|+|||+.+.+| |++.-++... +.-+.+ .+.+....+.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 699999999999999999999999999999998876 5555444422 111122 13444455677
Q ss_pred HHHHHHHcCCCce
Q 037740 64 TMEFFDSLGVDMK 76 (130)
Q Consensus 64 ~~~~~~~~g~~~~ 76 (130)
+..+++.+|+...
T Consensus 84 ~i~~~e~~Gi~~~ 96 (408)
T COG2081 84 FIDWVEGLGIALK 96 (408)
T ss_pred HHHHHHhcCCeeE
Confidence 7788888887554
No 37
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.34 E-value=4.4e-12 Score=86.08 Aligned_cols=76 Identities=29% Similarity=0.565 Sum_probs=44.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC--------CCeeeecc--cCcccccc----c----ccccCCCCh
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG--------GHAKTITI--DGVDLDLG----F----TLFNHATSP 62 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g--------g~~~~~~~--~~~~~~~g----~----~~~~~~~~~ 62 (130)
|||+|||||++||.||+.+++.|.+|+|+||++.+| |++.-.+. ....+... . ..+......
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 899999999999999999999999999999998886 56665542 11111111 1 122223345
Q ss_pred hHHHHHHHcCCCce
Q 037740 63 NTMEFFDSLGVDMK 76 (130)
Q Consensus 63 ~~~~~~~~~g~~~~ 76 (130)
++.++++++|++..
T Consensus 81 d~~~ff~~~Gv~~~ 94 (409)
T PF03486_consen 81 DLIAFFEELGVPTK 94 (409)
T ss_dssp HHHHHHHHTT--EE
T ss_pred HHHHHHHhcCCeEE
Confidence 56677777777543
No 38
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=1.4e-11 Score=79.74 Aligned_cols=71 Identities=25% Similarity=0.476 Sum_probs=57.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc--Cccc-ccccccccCCCChhHHHHHHHcC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVDL-DLGFTLFNHATSPNTMEFFDSLG 72 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~--~~~~-~~g~~~~~~~~~~~~~~~~~~~g 72 (130)
||++|||+|++|+..|..|++.|.+|.|+||.+.+||.+.+...+ |..+ ..|++.++- .....++++..+.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-~~~~Vwdyv~~F~ 75 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-DNKRVWDYVNQFT 75 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-CchHHHHHHhhhh
Confidence 699999999999999999999999999999999999999887763 3332 458888763 3455666766553
No 39
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.31 E-value=2.1e-12 Score=88.86 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||+||+|++||..+++.|.+|+|+|+ ..+||.+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 7999999999999999999999999999999 57888443
No 40
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.30 E-value=2.9e-12 Score=88.70 Aligned_cols=39 Identities=38% Similarity=0.632 Sum_probs=36.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
|||+|||+|++|+.+|..+++.|.+|+|+|+.+..||.+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 799999999999999999999999999999977788843
No 41
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.29 E-value=7.4e-12 Score=83.28 Aligned_cols=60 Identities=35% Similarity=0.590 Sum_probs=42.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|..|++.|++|+|||+++......... . ...+.+++++.+|+...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~------------~----l~~~~~~~l~~lgl~~~ 61 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGI------------G----LSPNSLRILQRLGLLDE 61 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSE------------E----EEHHHHHHHHHTTEHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccccccccc------------c----cccccccccccccchhh
Confidence 589999999999999999999999999999976543311111 1 13556677788876543
No 42
>PTZ00058 glutathione reductase; Provisional
Probab=99.29 E-value=1.1e-11 Score=87.13 Aligned_cols=36 Identities=44% Similarity=0.666 Sum_probs=34.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
||++|||+|++|++||..+++.|.+|+|+|++ .+||
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GG 84 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGG 84 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccc
Confidence 79999999999999999999999999999995 6888
No 43
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.28 E-value=9.1e-12 Score=86.04 Aligned_cols=40 Identities=43% Similarity=0.655 Sum_probs=36.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~ 41 (130)
|||+|||+|++|+++|..|++.|.+|+|+|+ +.+||.+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 7999999999999999999999999999999 788996543
No 44
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.27 E-value=9e-12 Score=86.10 Aligned_cols=39 Identities=41% Similarity=0.626 Sum_probs=35.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||+|++|++||..+++.|.+|+|+|+.. .||.+.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 799999999999999999999999999999965 888553
No 45
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.27 E-value=6.4e-12 Score=87.05 Aligned_cols=39 Identities=33% Similarity=0.594 Sum_probs=35.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
||++|||+|++|+++|..|++.|.+|+|+|+. .+||.+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 79999999999999999999999999999995 7888543
No 46
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.27 E-value=7.2e-12 Score=86.68 Aligned_cols=39 Identities=33% Similarity=0.594 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
|||+|||+||+|++||..+++.|.+|+|+|+...+||.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 799999999999999999999999999999867789854
No 47
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.27 E-value=1.7e-11 Score=85.56 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=55.3
Q ss_pred cEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeec--ccCcccccccccccCCCChhHHHHHHHc
Q 037740 2 QVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTIT--IDGVDLDLGFTLFNHATSPNTMEFFDSL 71 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 71 (130)
+++|||||++||+||.+|++. |.+|+|+|+++.+||+..++. .+|+.++.|+.. ...+.++.++++.+
T Consensus 24 ~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~--~~~y~~l~~ll~~i 97 (576)
T PRK13977 24 KAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM--ENHFECLWDLFRSI 97 (576)
T ss_pred eEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc--cchHHHHHHHHHhc
Confidence 689999999999999999995 689999999999999987755 456777777765 33456677777665
No 48
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.25 E-value=1.3e-10 Score=78.81 Aligned_cols=57 Identities=40% Similarity=0.649 Sum_probs=44.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGV 73 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~ 73 (130)
+||+|||||++||++|..|++.|++|+|+|+.+ ..-...+ .. ...++.+++++.+|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r------------~~----~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGR------------GI----ALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCce------------ee----eecHhHHHHHHHcCC
Confidence 589999999999999999999999999999961 1111111 11 125678899999998
No 49
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.24 E-value=1.2e-11 Score=83.94 Aligned_cols=37 Identities=41% Similarity=0.632 Sum_probs=35.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
|||+|||+||+|++||+.|++.|++|+|+|+.+.+|.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~ 40 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGA 40 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 7999999999999999999999999999999887775
No 50
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.24 E-value=1.4e-11 Score=84.97 Aligned_cols=38 Identities=42% Similarity=0.616 Sum_probs=35.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
|||+|||+|++|++||..+++.|.+|+|+|+ ..+||.+
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c 40 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTC 40 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccce
Confidence 7999999999999999999999999999999 4688844
No 51
>PRK06116 glutathione reductase; Validated
Probab=99.24 E-value=1.3e-11 Score=85.13 Aligned_cols=38 Identities=45% Similarity=0.632 Sum_probs=35.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
|||+|||+|++|++||..|++.|++|+|+|+. .+||.+
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence 79999999999999999999999999999994 788844
No 52
>PRK08244 hypothetical protein; Provisional
Probab=99.23 E-value=4.2e-11 Score=83.44 Aligned_cols=59 Identities=34% Similarity=0.437 Sum_probs=44.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM 75 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 75 (130)
+||+||||||+||++|..|++.|++|+|+|+.+...-..+.. ...+..+++++.+|+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~----------------~l~~~~~e~l~~lGl~~ 61 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKAL----------------TLHPRTLEILDMRGLLE 61 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCccee----------------EecHHHHHHHHhcCcHH
Confidence 699999999999999999999999999999976432111111 11356677788888743
No 53
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.23 E-value=7.4e-12 Score=85.78 Aligned_cols=45 Identities=40% Similarity=0.634 Sum_probs=41.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT 54 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~ 54 (130)
||++|||+|++|..+|+.+++.|.+|.++|+...+|| .|++.||.
T Consensus 5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGG---------tCln~GCI 49 (454)
T COG1249 5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG---------TCLNVGCI 49 (454)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCc---------eEEeeCcc
Confidence 7999999999999999999999999999999767888 78888884
No 54
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.23 E-value=1.8e-11 Score=84.59 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=37.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~ 41 (130)
|||+|||+|++|+++|..|++.|.+|+|+|+.+.+||.+..
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 79999999999999999999999999999998788996543
No 55
>PRK06184 hypothetical protein; Provisional
Probab=99.22 E-value=4.6e-11 Score=83.42 Aligned_cols=60 Identities=35% Similarity=0.466 Sum_probs=45.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+||||||+||++|+.|++.|++|+|+|+.+.+....+.. ...++.+++++.+|+..+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~----------------~l~~~~~e~l~~lGl~~~ 63 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGK----------------GIQPRTQEVFDDLGVLDR 63 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccce----------------eecHHHHHHHHHcCcHHH
Confidence 589999999999999999999999999999976543211111 113567788888887543
No 56
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.22 E-value=2.2e-11 Score=84.07 Aligned_cols=42 Identities=40% Similarity=0.610 Sum_probs=38.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~ 42 (130)
++|+|||||++||+||..|.+.|++|+|||+++.+||.|...
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~ 52 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYT 52 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecC
Confidence 479999999999999999999999999999999999988643
No 57
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.22 E-value=2.2e-11 Score=84.20 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=35.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||+|++|+++|..+++.|.+|+|+|+.. .||.+-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 799999999999999999999999999999954 788543
No 58
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.22 E-value=4e-11 Score=81.77 Aligned_cols=35 Identities=37% Similarity=0.639 Sum_probs=32.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 68999999999999999999999999999997653
No 59
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.22 E-value=2.6e-11 Score=83.30 Aligned_cols=50 Identities=46% Similarity=0.759 Sum_probs=44.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCCCeeeecccCcccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHAKTITIDGVDLD 50 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg~~~~~~~~~~~~~ 50 (130)
+||+|||||++|+++|+.|.+.|.. ++||||++.+||.|+...+.+.+++
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~ 59 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLD 59 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEEC
Confidence 5899999999999999999999998 9999999999999888777554433
No 60
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.20 E-value=2.2e-11 Score=84.13 Aligned_cols=39 Identities=44% Similarity=0.564 Sum_probs=35.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||+|++|+++|..|++.|.+|+|+|+ ...||.+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 7999999999999999999999999999999 67888543
No 61
>PRK06370 mercuric reductase; Validated
Probab=99.20 E-value=2.9e-11 Score=83.63 Aligned_cols=38 Identities=37% Similarity=0.493 Sum_probs=34.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
|||+|||+|++|++||..+++.|++|+|+|+. ..||.+
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c 43 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTC 43 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCce
Confidence 79999999999999999999999999999995 677744
No 62
>PLN02546 glutathione reductase
Probab=99.20 E-value=1.9e-11 Score=85.98 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=38.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC---------CCCCCCeeeecccCccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE---------DSLGGHAKTITIDGVDLDLGF 53 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~---------~~~gg~~~~~~~~~~~~~~g~ 53 (130)
|||+|||+|++|+.+|..+++.|.+|+|+|++ ..+|| .|++.||
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GG---------tC~n~GC 132 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGG---------TCVLRGC 132 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccC---------cccCcch
Confidence 79999999999999999999999999999962 23455 7888888
No 63
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.20 E-value=5.3e-10 Score=78.76 Aligned_cols=60 Identities=23% Similarity=0.441 Sum_probs=46.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||+|++||++|..|++.|++|+|+|+.+......+...+ ..+.++.++.+|+..+
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l----------------~~~~~~~L~~lGl~~~ 70 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGI----------------DDEALRVLQAIGLADE 70 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeee----------------CHHHHHHHHHcCChhH
Confidence 58999999999999999999999999999998765432222111 3567778888887544
No 64
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.19 E-value=9.6e-11 Score=79.46 Aligned_cols=34 Identities=38% Similarity=0.691 Sum_probs=32.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 6999999999999999999999999999999764
No 65
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.19 E-value=3.5e-11 Score=82.71 Aligned_cols=38 Identities=39% Similarity=0.507 Sum_probs=34.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC-CCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS-LGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~-~gg~ 38 (130)
|||+|||||++|++||..|++.|.+|+|+|+.+. +||.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~ 42 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGT 42 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCccccee
Confidence 7999999999999999999999999999999753 5773
No 66
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.19 E-value=4e-11 Score=82.20 Aligned_cols=36 Identities=33% Similarity=0.717 Sum_probs=33.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
|||+|||||++|++||+.|+++|++|+|+||.+.+|
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 799999999999999999999999999999976554
No 67
>PRK06753 hypothetical protein; Provisional
Probab=99.19 E-value=8e-11 Score=79.30 Aligned_cols=35 Identities=43% Similarity=0.817 Sum_probs=32.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 48999999999999999999999999999998764
No 68
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.18 E-value=3.7e-11 Score=82.64 Aligned_cols=39 Identities=41% Similarity=0.550 Sum_probs=35.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~gg~~ 39 (130)
|||+|||||++|++||..|++.|.+|+|+|+.+ ..||.+
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~ 43 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTC 43 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeE
Confidence 799999999999999999999999999999865 467744
No 69
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.18 E-value=9.3e-11 Score=79.57 Aligned_cols=60 Identities=37% Similarity=0.649 Sum_probs=44.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
.||+|||||++||++|..|++.|++|+|+||.+..+..... .. ..++..+.++.+|+...
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~g-----------i~-----l~~~~~~~l~~lg~~~~ 64 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAG-----------IQ-----LGPNAFSALDALGVGEA 64 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccce-----------ee-----eCchHHHHHHHcCChHH
Confidence 48999999999999999999999999999997654321111 01 13556677788876443
No 70
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.18 E-value=1e-10 Score=82.41 Aligned_cols=60 Identities=38% Similarity=0.630 Sum_probs=46.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||+|++||++|+.|++.|.+|+|+|+.+......+.... ..+.+++++.+|+..+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l----------------~~~~~~~l~~lGl~~~ 83 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICF----------------AKRSLEIFDRLGCGER 83 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEE----------------cHHHHHHHHHcCCcHH
Confidence 58999999999999999999999999999998754332222211 3566778888887544
No 71
>PRK10015 oxidoreductase; Provisional
Probab=99.18 E-value=4.1e-11 Score=82.19 Aligned_cols=36 Identities=42% Similarity=0.807 Sum_probs=33.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
|||+|||||++|++||+.|++.|++|+|+||.+.+|
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 699999999999999999999999999999976543
No 72
>PRK08013 oxidoreductase; Provisional
Probab=99.18 E-value=1.2e-10 Score=79.23 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=46.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|..|++.|++|+|+|+.+.+.-.. +...+..... ..+..+++++++|+...
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~------g~~~~~r~~~----l~~~s~~~L~~lGl~~~ 69 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAA------DAPPALRVSA----INAASEKLLTRLGVWQD 69 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCccccc------CCCCCceeee----cchhHHHHHHHcCCchh
Confidence 699999999999999999999999999999976532100 0111111111 23557788899987544
No 73
>PRK06126 hypothetical protein; Provisional
Probab=99.17 E-value=1e-10 Score=82.44 Aligned_cols=34 Identities=44% Similarity=0.736 Sum_probs=31.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5899999999999999999999999999999753
No 74
>PRK13748 putative mercuric reductase; Provisional
Probab=99.17 E-value=4.2e-11 Score=84.59 Aligned_cols=39 Identities=36% Similarity=0.611 Sum_probs=35.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||+|++|+++|..|++.|.+|+|+|++ .+||.|.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 79999999999999999999999999999996 7898553
No 75
>PRK14694 putative mercuric reductase; Provisional
Probab=99.17 E-value=5.1e-11 Score=82.56 Aligned_cols=39 Identities=36% Similarity=0.618 Sum_probs=35.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||+|++|+++|..|++.|.+|+|+|+. .+||.|.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 79999999999999999999999999999995 6888654
No 76
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.17 E-value=5.5e-11 Score=82.34 Aligned_cols=39 Identities=31% Similarity=0.485 Sum_probs=35.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||+|++|++||..+++.|.+|+|+|+ ..+||.+.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~ 43 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCL 43 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 7999999999999999999999999999998 46788443
No 77
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.16 E-value=1.1e-10 Score=78.71 Aligned_cols=35 Identities=34% Similarity=0.703 Sum_probs=32.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
||+|||||++|+++|+.|++.|++|+|+|+.+.++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 79999999999999999999999999999987643
No 78
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.16 E-value=5.6e-11 Score=82.89 Aligned_cols=31 Identities=39% Similarity=0.614 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK 31 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~ 31 (130)
|||+|||+|++|++||..+++.|.+|+|+|+
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 7999999999999999999999999999997
No 79
>PRK07538 hypothetical protein; Provisional
Probab=99.16 E-value=1.3e-10 Score=79.44 Aligned_cols=35 Identities=43% Similarity=0.808 Sum_probs=32.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999997643
No 80
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.16 E-value=4.4e-11 Score=82.02 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=42.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~ 44 (130)
|||+|||+|++|+.+|..|++.|.+|+++|+++..||++++.+.
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l 48 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNL 48 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccH
Confidence 79999999999999999999999999999999999999998755
No 81
>PRK07045 putative monooxygenase; Reviewed
Probab=99.15 E-value=1.3e-10 Score=78.80 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 58999999999999999999999999999997654
No 82
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.15 E-value=1.7e-10 Score=77.89 Aligned_cols=33 Identities=24% Similarity=0.643 Sum_probs=31.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 699999999999999999999999999999864
No 83
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.15 E-value=1.8e-10 Score=77.99 Aligned_cols=66 Identities=27% Similarity=0.433 Sum_probs=45.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|+.|++.|++|+|+|+.+..-- ... -..+.++.. ..++.+++++.+|+...
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~-----~~~-~~~~~r~~~----l~~~~~~~L~~lG~~~~ 69 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAF-----EPS-QPMDIRVSA----ISQTSVDLLESLGAWSS 69 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccC-----CCC-CCCCccEEE----ecHHHHHHHHHCCCchh
Confidence 5899999999999999999999999999998642100 000 011122212 24677888899997544
No 84
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.15 E-value=8.1e-11 Score=76.65 Aligned_cols=37 Identities=35% Similarity=0.525 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
|||+|||||++|+++|+.|++.|.+|+|+|+.+..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999876543
No 85
>PLN02661 Putative thiazole synthesis
Probab=99.15 E-value=1.8e-10 Score=76.37 Aligned_cols=37 Identities=38% Similarity=0.665 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg 37 (130)
+||+|||+|++|+++|+.|++. |++|+|+|++..+||
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 5999999999999999999986 899999999888877
No 86
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.15 E-value=7e-11 Score=82.10 Aligned_cols=44 Identities=27% Similarity=0.519 Sum_probs=38.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecC--------CCCCCCeeeecccCccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKE--------DSLGGHAKTITIDGVDLDLGF 53 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~--------~~~gg~~~~~~~~~~~~~~g~ 53 (130)
||++|||+|++|+.||..+++. |.+|+|+|++ ..+|| .|++.||
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GG---------tCln~GC 56 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGG---------TCVNVGC 56 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccC---------eecCcCC
Confidence 7999999999999999999997 9999999984 35677 6677766
No 87
>PRK07588 hypothetical protein; Provisional
Probab=99.14 E-value=2e-10 Score=77.92 Aligned_cols=34 Identities=35% Similarity=0.568 Sum_probs=31.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4899999999999999999999999999999754
No 88
>PLN02976 amine oxidase
Probab=99.14 E-value=2.3e-10 Score=86.55 Aligned_cols=77 Identities=26% Similarity=0.463 Sum_probs=61.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCC-------hhHH-HHHHHc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATS-------PNTM-EFFDSL 71 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~-------~~~~-~~~~~~ 71 (130)
+||+|||+|++|+++|+.|.+.|++|+|||+.+.+||++.+... .++.++.|+.++..... .+.. .+.+++
T Consensus 694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ql 773 (1713)
T PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQL 773 (1713)
T ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhc
Confidence 47999999999999999999999999999999999999888764 46778889887765321 1222 367888
Q ss_pred CCCcee
Q 037740 72 GVDMKS 77 (130)
Q Consensus 72 g~~~~~ 77 (130)
|+....
T Consensus 774 Gl~l~~ 779 (1713)
T PLN02976 774 GLELTV 779 (1713)
T ss_pred CCcccc
Confidence 876643
No 89
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.14 E-value=8.6e-11 Score=79.27 Aligned_cols=35 Identities=40% Similarity=0.561 Sum_probs=32.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
|||+|||||++|+++|++|++.|.+|+|+|+....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 79999999999999999999999999999996543
No 90
>PRK06185 hypothetical protein; Provisional
Probab=99.14 E-value=1.9e-10 Score=78.33 Aligned_cols=60 Identities=33% Similarity=0.598 Sum_probs=43.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|+.|++.|++|+|+|+++.... +.... .......++++.+|+...
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~------------~~r~~----~l~~~s~~~L~~lG~~~~ 66 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR------------DFRGD----TVHPSTLELMDELGLLER 66 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc------------cccCc----eeChhHHHHHHHcCChhH
Confidence 6999999999999999999999999999999753211 00001 123456778888887443
No 91
>PRK06847 hypothetical protein; Provisional
Probab=99.14 E-value=2.2e-10 Score=77.23 Aligned_cols=35 Identities=40% Similarity=0.698 Sum_probs=32.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 48999999999999999999999999999997653
No 92
>PLN02507 glutathione reductase
Probab=99.14 E-value=9.3e-11 Score=81.80 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=30.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK 31 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~ 31 (130)
||++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 7999999999999999999999999999996
No 93
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.14 E-value=2.1e-10 Score=77.64 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=32.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 58999999999999999999999999999997654
No 94
>PRK05868 hypothetical protein; Validated
Probab=99.13 E-value=2.5e-10 Score=77.08 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=32.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999997654
No 95
>PRK07236 hypothetical protein; Provisional
Probab=99.13 E-value=2.8e-10 Score=77.13 Aligned_cols=61 Identities=28% Similarity=0.479 Sum_probs=44.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++||++|..|++.|++|+|+|+.+..-. ..|... ...++.+++++.+|+...
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~------------~~g~gi---~l~~~~~~~l~~lg~~~~ 67 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD------------GRGAGI---VLQPELLRALAEAGVALP 67 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC------------CCCcee---EeCHHHHHHHHHcCCCcc
Confidence 4899999999999999999999999999999753210 011110 013567788888887543
No 96
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.13 E-value=6.3e-11 Score=81.24 Aligned_cols=39 Identities=49% Similarity=0.755 Sum_probs=32.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
||+|||||++|++||+.+++.|.+|+|+|+.+.+||..+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 899999999999999999999999999999999998553
No 97
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.13 E-value=2.9e-10 Score=77.16 Aligned_cols=62 Identities=32% Similarity=0.422 Sum_probs=44.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|..|++.|++|+|+|+.+...- .-+.+...+ ..+.+++++.+|+..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~----------~~~~~a~~l----~~~~~~~L~~lGl~~~ 64 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYV----------LGRIRAGVL----EQGTVDLLREAGVDER 64 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCccc----------CCceeEeeE----CHHHHHHHHHCCChHH
Confidence 5899999999999999999999999999999764210 001122222 3457788888887544
No 98
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.13 E-value=2.4e-10 Score=77.62 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=44.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC--CCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL--GGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~--gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||+|++|+++|+.|++.|++|+|+|+.+.. .+ ..+...+ .++.+++++++|+..+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~------------~~~a~~l----~~~~~~~l~~lGl~~~ 64 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG------------RIRAGVL----EQGTVDLLREAGVGER 64 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc------------ccceeEE----CHhHHHHHHHcCChHH
Confidence 58999999999999999999999999999997642 11 1111111 3466778888887443
No 99
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.13 E-value=2.3e-10 Score=77.79 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=31.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~ 34 (130)
|||+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 79999999999999999999995 99999999764
No 100
>PRK07190 hypothetical protein; Provisional
Probab=99.13 E-value=2e-10 Score=79.89 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=32.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+||||||+||++|+.|++.|.+|+|+|+.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 58999999999999999999999999999997654
No 101
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.13 E-value=2e-10 Score=75.05 Aligned_cols=39 Identities=31% Similarity=0.550 Sum_probs=35.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||||++|+++|..|++.|.+|+|+|+.+ .||.+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~ 39 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT 39 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence 799999999999999999999999999999865 677543
No 102
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.12 E-value=1.9e-10 Score=78.38 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=45.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccc-cccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLD-LGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|+.|++.|++|+|+|+.+...+.... ....+ .+. ...++.+++++.+|+...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~----~~~~~~r~~-----~l~~~~~~~L~~lGl~~~ 70 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDP----QAPFEPRVS-----ALSAASQRILERLGAWDG 70 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCcccccccc----CCCCCccch-----hhhHHHHHHHHHCChhhh
Confidence 69999999999999999999999999999997532110000 00000 110 124667788888887544
No 103
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.12 E-value=1.2e-10 Score=79.44 Aligned_cols=40 Identities=30% Similarity=0.621 Sum_probs=34.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
+||+|||||++|+++|++|++.|.+|+|+|+++.+|..++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as 41 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS 41 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence 5899999999999999999999999999999775554333
No 104
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.12 E-value=2.5e-10 Score=77.15 Aligned_cols=33 Identities=33% Similarity=0.744 Sum_probs=31.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~ 34 (130)
||+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 8999999999999999999999 99999999754
No 105
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.12 E-value=2.2e-10 Score=77.63 Aligned_cols=35 Identities=49% Similarity=0.732 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+|||+|++|+++|..|++.|.+|+|+|+++..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999997643
No 106
>PLN02985 squalene monooxygenase
Probab=99.12 E-value=2.6e-10 Score=79.80 Aligned_cols=60 Identities=27% Similarity=0.422 Sum_probs=43.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|..|++.|.+|+|+|++.....+. .| . ...+...+.++++|+...
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~-----------~g-~----~L~p~g~~~L~~LGl~d~ 103 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM-----------MG-E----FMQPGGRFMLSKLGLEDC 103 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc-----------cc-c----ccCchHHHHHHHcCCcch
Confidence 689999999999999999999999999999964321100 01 1 123456677888887554
No 107
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.12 E-value=1.2e-10 Score=79.12 Aligned_cols=42 Identities=33% Similarity=0.583 Sum_probs=36.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTI 42 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~~ 42 (130)
+||+|||||++|+++|++|++. |.+|+|+|+...+|+.++..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~ 46 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGH 46 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccccccc
Confidence 6999999999999999999998 99999999976666544443
No 108
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.11 E-value=1.3e-10 Score=77.43 Aligned_cols=38 Identities=42% Similarity=0.763 Sum_probs=33.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
||+|||+|++|+++|++|++.|++|+|+|++ .+++.++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~~aS 38 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGSGAS 38 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTSSGG
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-ccccccc
Confidence 8999999999999999999999999999998 5555333
No 109
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.11 E-value=1.2e-10 Score=79.81 Aligned_cols=41 Identities=46% Similarity=0.706 Sum_probs=39.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeee
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~ 42 (130)
+|+|||||++||++|..|.+.|++++||||.+.+||.|...
T Consensus 8 ~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 8 DVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred ceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 79999999999999999999999999999999999988766
No 110
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.10 E-value=1.6e-10 Score=82.70 Aligned_cols=45 Identities=31% Similarity=0.667 Sum_probs=39.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC-CCCCCCeeeecccCcccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE-DSLGGHAKTITIDGVDLDLGFT 54 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~-~~~gg~~~~~~~~~~~~~~g~~ 54 (130)
|||+|||+|++|..+|..+++.|.+|+|+|++ ..+|| .|++.||.
T Consensus 117 yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGG---------tCvn~GCi 162 (659)
T PTZ00153 117 YDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG---------TCVNVGCI 162 (659)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccc---------ceeEeCCc
Confidence 79999999999999999999999999999974 36788 67777773
No 111
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.10 E-value=1.4e-10 Score=78.64 Aligned_cols=32 Identities=50% Similarity=0.794 Sum_probs=31.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
|||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999986
No 112
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-10 Score=75.68 Aligned_cols=40 Identities=38% Similarity=0.670 Sum_probs=33.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg~~~~ 41 (130)
|||+|||+||+||+||.++++++.+ ++|+|+ ..+||....
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~ 44 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTK 44 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcccc
Confidence 6999999999999999999999998 777777 556764433
No 113
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.10 E-value=3.7e-10 Score=77.19 Aligned_cols=36 Identities=44% Similarity=0.810 Sum_probs=32.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~g 36 (130)
.+|+|||||++||++|..|++.| .+|+||||.+..+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 47999999999999999999998 5999999976654
No 114
>PRK14727 putative mercuric reductase; Provisional
Probab=99.10 E-value=1.4e-10 Score=80.55 Aligned_cols=41 Identities=34% Similarity=0.579 Sum_probs=37.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~ 41 (130)
||++|||+|++|+++|..|++.|.+|+++|+.+.+||.|..
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 79999999999999999999999999999997788996643
No 115
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.09 E-value=3.9e-10 Score=76.87 Aligned_cols=64 Identities=27% Similarity=0.342 Sum_probs=45.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCC-CCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLG-GHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS 77 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~g-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 77 (130)
+||+|||||++|+++|..|++.|++|+|+|+.. ... + ...+.... ....+.+++++.+|+..+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~---------~~~~~r~~----~l~~~~~~~L~~lGl~~~l 70 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALN---------ELPDVRVS----ALSRSSEHILRNLGAWQGI 70 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCccccc---------CCCCccee----cccHHHHHHHHhCCchhhh
Confidence 599999999999999999999999999999852 110 0 00011011 1245788899999975543
No 116
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.09 E-value=4e-10 Score=76.71 Aligned_cols=59 Identities=34% Similarity=0.576 Sum_probs=43.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+|+|||||++||++|..|++.|++|+|+|+.+.... .|... ...++.++.++.+|+..+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-------------~g~gi---~l~~~~~~~L~~~Gl~~~ 62 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-------------VGAGL---QLAPNAMRHLERLGVADR 62 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-------------CCccc---eeChhHHHHHHHCCChHH
Confidence 799999999999999999999999999999764321 11100 113567777888886444
No 117
>PRK11445 putative oxidoreductase; Provisional
Probab=99.09 E-value=4.3e-10 Score=75.37 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=31.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
|||+|||+||+|+++|..|++. ++|+|+|+.+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 7999999999999999999999 999999997654
No 118
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.09 E-value=2.1e-10 Score=78.07 Aligned_cols=34 Identities=41% Similarity=0.705 Sum_probs=32.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+||+||||||+|++||..|++.|++|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 6999999999999999999999999999998754
No 119
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.09 E-value=2.7e-10 Score=77.43 Aligned_cols=64 Identities=42% Similarity=0.736 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc--CcccccccccccCCCChhHHHHHHHcCCC
Q 037740 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVDLDLGFTLFNHATSPNTMEFFDSLGVD 74 (130)
Q Consensus 10 ~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ 74 (130)
++||+||++|+++|++|+|+|+++.+||++.|...+ +..++.|++.+... ..+..+++.++++.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~-~~~~~~~~~~l~~~ 66 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGM-YPNLLNLIDELGLE 66 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETT-SHHHHHHHHHHTHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCccccccc-chhhHHHHHHhhhc
Confidence 689999999999999999999999999999999998 89999999998753 34477888888864
No 120
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.08 E-value=4.1e-10 Score=77.50 Aligned_cols=33 Identities=36% Similarity=0.618 Sum_probs=31.0
Q ss_pred CcEEEEccCHHHHHHHHHHHH----CCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAK----AGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~----~g~~v~v~E~~~ 33 (130)
|||+|||||++|+++|+.|++ .|++|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999999 799999999954
No 121
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.08 E-value=1.4e-10 Score=80.68 Aligned_cols=32 Identities=41% Similarity=0.542 Sum_probs=30.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
||++|||+|++|+.+|..+++.|.+|+++|+.
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 79999999999999999999999999999973
No 122
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.08 E-value=1.6e-10 Score=71.62 Aligned_cols=38 Identities=42% Similarity=0.680 Sum_probs=31.7
Q ss_pred EEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCCCeee
Q 037740 4 AVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHAKT 41 (130)
Q Consensus 4 ~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg~~~~ 41 (130)
+|||||++||++|..|.+.|.+ ++|||+++.+||.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 6999999999999999999999 9999999999998764
No 123
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.08 E-value=2.2e-10 Score=79.56 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEec------CCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK------EDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~------~~~~gg~~ 39 (130)
||++|||+|++|++||..+++.|.+|+|+|+ ...+||.+
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c 49 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC 49 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence 7999999999999999999999999999998 24566644
No 124
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.08 E-value=2.4e-10 Score=79.97 Aligned_cols=38 Identities=37% Similarity=0.533 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
|||+|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 79999999999999999999999999999997655553
No 125
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.08 E-value=5e-10 Score=80.12 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=44.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS 77 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 77 (130)
+||+||||||+||++|+.|++. |.+|+|+|+.+...-..+.. ...+.++++++.+|+....
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~----------------gl~prtleiL~~lGl~d~l 94 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD----------------GIACRTMEMFQAFGFAERI 94 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee----------------EEChHHHHHHHhccchHHH
Confidence 5899999999999999999994 99999999875332111110 1135678888888875543
No 126
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.08 E-value=2.4e-10 Score=77.04 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+||+|||||++|+++|++|++.|.+|+|+|+....
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 69999999999999999999999999999997644
No 127
>PRK06834 hypothetical protein; Provisional
Probab=99.07 E-value=6.5e-10 Score=77.45 Aligned_cols=34 Identities=44% Similarity=0.585 Sum_probs=32.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+||+|||+|++|+++|+.|++.|.+|+|+|+.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999999999999764
No 128
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.07 E-value=2.2e-10 Score=79.03 Aligned_cols=33 Identities=45% Similarity=0.714 Sum_probs=31.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999999999999864
No 129
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=3.2e-10 Score=79.31 Aligned_cols=38 Identities=29% Similarity=0.579 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|.+|++||+.+++.|.+|+|+||.+..||.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 59999999999999999999999999999998888774
No 130
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.06 E-value=3e-10 Score=84.13 Aligned_cols=40 Identities=45% Similarity=0.773 Sum_probs=37.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
++|+|||||+|||+||+.|++.|++|+|||+.+.+||..+
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 4799999999999999999999999999999988998654
No 131
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.06 E-value=2.9e-10 Score=84.25 Aligned_cols=40 Identities=40% Similarity=0.671 Sum_probs=36.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
.+|+|||+|||||+||..|++.|++|+|||+.+.+||..+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 4799999999999999999999999999999999999543
No 132
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.06 E-value=3.8e-10 Score=75.90 Aligned_cols=34 Identities=32% Similarity=0.661 Sum_probs=32.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+||+|||+|++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999654
No 133
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=3.4e-10 Score=79.09 Aligned_cols=37 Identities=43% Similarity=0.598 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
|||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 6999999999999999999999999999999865444
No 134
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.04 E-value=4.3e-10 Score=79.47 Aligned_cols=39 Identities=31% Similarity=0.681 Sum_probs=35.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||||++||+||..|++.|++|+|+|++ ..||.+.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 79999999999999999999999999999995 6788654
No 135
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.04 E-value=3.3e-10 Score=77.42 Aligned_cols=36 Identities=56% Similarity=0.865 Sum_probs=32.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
||+|||+|++||+||+.++++|.+|+|+||.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999888777
No 136
>PTZ00367 squalene epoxidase; Provisional
Probab=99.04 E-value=5.4e-10 Score=78.87 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=44.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|..|++.|++|+|+|+++.... ....|. ...++..+.++++|+...
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~----------~r~~G~-----~L~p~g~~~L~~LGL~d~ 94 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP----------DRIVGE-----LLQPGGVNALKELGMEEC 94 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc----------chhhhh-----hcCHHHHHHHHHCCChhh
Confidence 5899999999999999999999999999999641100 000111 124667788899987554
No 137
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.04 E-value=9.4e-10 Score=74.62 Aligned_cols=33 Identities=36% Similarity=0.666 Sum_probs=31.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHC---CCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA---GVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~ 33 (130)
+||+|||+|++|+++|+.|++. |++|+|+|+..
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 6999999999999999999998 99999999953
No 138
>PRK09126 hypothetical protein; Provisional
Probab=99.04 E-value=3.3e-10 Score=76.79 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=32.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 6899999999999999999999999999999765
No 139
>PRK07121 hypothetical protein; Validated
Probab=99.03 E-value=4.9e-10 Score=78.18 Aligned_cols=39 Identities=33% Similarity=0.529 Sum_probs=35.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+|.+|++||+.+++.|.+|+|+||.+..||..
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 599999999999999999999999999999988777743
No 140
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.03 E-value=4.2e-10 Score=76.24 Aligned_cols=36 Identities=47% Similarity=0.723 Sum_probs=33.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
||+|||+|++|+++|+.|++.|++|+|+|+.+..++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 899999999999999999999999999999876664
No 141
>PRK07846 mycothione reductase; Reviewed
Probab=99.03 E-value=2.5e-10 Score=78.83 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=34.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGF 53 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~ 53 (130)
||++|||+|++|.++|.. ..|.+|+++|+ ..+|| .|++.||
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GG---------tC~n~GC 42 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGG---------TCLNVGC 42 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCC---------cccCcCc
Confidence 799999999999999876 46999999998 56788 5666666
No 142
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.03 E-value=3.7e-10 Score=79.17 Aligned_cols=41 Identities=46% Similarity=0.683 Sum_probs=35.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeee
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~ 42 (130)
+|+|||||++||++|..|.+.|+++++||+++.+||.|+..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~ 43 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYT 43 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeC
Confidence 69999999999999999999999999999999999998643
No 143
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.03 E-value=4.4e-10 Score=80.91 Aligned_cols=43 Identities=40% Similarity=0.593 Sum_probs=36.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT 43 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~ 43 (130)
+||+|||||++|+++|+.|++.|.+|+|+|++..++..++...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~ 303 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNR 303 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCc
Confidence 4899999999999999999999999999999765554444443
No 144
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.03 E-value=5.2e-10 Score=76.97 Aligned_cols=37 Identities=46% Similarity=0.782 Sum_probs=34.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGGH 38 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg~ 38 (130)
||+|||+|.+|++||+.++++| .+|+|+||.+..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc
Confidence 8999999999999999999999 999999998877764
No 145
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.02 E-value=5.1e-10 Score=76.42 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=37.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~ 44 (130)
.||+|||||++|+++|++|++.|.+|+|+|+...++..++..+.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~n~ 44 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANA 44 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheeccC
Confidence 48999999999999999999999999999997666655555544
No 146
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.02 E-value=5.3e-10 Score=78.86 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=32.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
|||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 69999999999999999999999999999996543
No 147
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.02 E-value=6.4e-10 Score=77.09 Aligned_cols=37 Identities=41% Similarity=0.652 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC--CCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS--LGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~--~gg 37 (130)
+||+|||+|++|++||+.+++.|.+|+|+||.+. .||
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG 43 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence 5999999999999999999999999999999764 455
No 148
>PRK12831 putative oxidoreductase; Provisional
Probab=99.01 E-value=6.7e-10 Score=76.94 Aligned_cols=39 Identities=46% Similarity=0.600 Sum_probs=36.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+|++||++|..|++.|++|+|+|+.+.+||..
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l 179 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL 179 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCee
Confidence 479999999999999999999999999999988888865
No 149
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.01 E-value=5.4e-10 Score=77.36 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=35.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~~~~ 44 (130)
+||+|||+|++|+++|++|++. |.+|+|+|++. +|..+++.+.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~-~g~GaSgrn~ 69 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL-CGAGASGRNG 69 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc-cccccccccC
Confidence 4899999999999999999998 89999999954 4544444443
No 150
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.00 E-value=4.9e-10 Score=75.32 Aligned_cols=41 Identities=32% Similarity=0.618 Sum_probs=36.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~------g~~v~v~E~~~~~gg~~~~ 41 (130)
+||+|||+||+||+||++|.+. ..+|+|+|+...+||+.-+
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 6999999999999999999874 5699999999999997644
No 151
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.00 E-value=5e-10 Score=75.95 Aligned_cols=33 Identities=36% Similarity=0.643 Sum_probs=31.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
|||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 699999999999999999999999999999865
No 152
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.00 E-value=4e-10 Score=77.83 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=34.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGF 53 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~ 53 (130)
||++|||+|++|..+|.. ..|.+|+++|+ ..+|| .|++.||
T Consensus 3 yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GG---------tC~n~GC 43 (452)
T TIGR03452 3 YDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGG---------TCLNVGC 43 (452)
T ss_pred cCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCC---------eeeccCc
Confidence 799999999999998654 46999999998 56788 5666666
No 153
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.99 E-value=2.5e-09 Score=71.26 Aligned_cols=33 Identities=36% Similarity=0.611 Sum_probs=31.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.||+|||+|.+|.+.|+.|++.|.+|+|+||+-
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 589999999999999999999999999999964
No 154
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.99 E-value=8.6e-10 Score=78.84 Aligned_cols=37 Identities=41% Similarity=0.611 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
|||+|||||+.|+++|+.|+++|++|+|+|+++...|
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 6999999999999999999999999999999755444
No 155
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.99 E-value=8.8e-10 Score=82.27 Aligned_cols=39 Identities=46% Similarity=0.629 Sum_probs=36.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
++|+|||||++||+||..|++.|++|+|||+.+.+||..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l 469 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVL 469 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCccee
Confidence 479999999999999999999999999999988888854
No 156
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.98 E-value=8.4e-10 Score=74.61 Aligned_cols=36 Identities=47% Similarity=0.831 Sum_probs=32.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+||+|||+|++|+++|++|++.|.+|+|+|+....+
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 589999999999999999999999999999966544
No 157
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.98 E-value=9.4e-10 Score=77.12 Aligned_cols=38 Identities=39% Similarity=0.725 Sum_probs=34.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+| +|++||+.+++.|.+|+|+||.+..||..
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 599999999 99999999999999999999988777744
No 158
>PLN02463 lycopene beta cyclase
Probab=98.98 E-value=7.6e-10 Score=76.21 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=31.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
|||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 699999999999999999999999999999865
No 159
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.97 E-value=1.2e-09 Score=75.69 Aligned_cols=38 Identities=37% Similarity=0.675 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
++|+|||+|++|+++|..+++.|.+|+|+|++ ..||.+
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c 38 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC 38 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence 37999999999999999999999999999995 577743
No 160
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.97 E-value=1.4e-09 Score=75.55 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=36.8
Q ss_pred CcEEEEccCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~--~g~~v~v~E~~~~~gg~~~~ 41 (130)
.+|+|||+||+|++||..|++ .|++|+|||+.+.+||..+.
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 369999999999999999987 69999999999999986653
No 161
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.97 E-value=1.1e-09 Score=74.68 Aligned_cols=39 Identities=49% Similarity=0.798 Sum_probs=36.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
+++|||||++|+.||..|++.|++|.++|+++.+||+..
T Consensus 126 svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred ceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 589999999999999999999999999999999999743
No 162
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.96 E-value=8.8e-10 Score=76.65 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=35.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~ 41 (130)
+||+|||||++|+++|+.|++. |.+|+|+|+.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 6999999999999999999997 9999999997666644443
No 163
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.96 E-value=1.5e-09 Score=76.74 Aligned_cols=39 Identities=46% Similarity=0.784 Sum_probs=35.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC--CCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED--SLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~--~~gg~~ 39 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||.+ ..||..
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 599999999999999999999999999999988 677754
No 164
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=2.1e-10 Score=75.37 Aligned_cols=76 Identities=30% Similarity=0.438 Sum_probs=60.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc----cccCCCChhHHHHHHHcCCCc-
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT----LFNHATSPNTMEFFDSLGVDM- 75 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~g~~~- 75 (130)
||.++||+|..|+++|..+++.|.++.++|....+|| .|++.||. ++..+.+.+.++-...+|.+.
T Consensus 21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGG---------TCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~ 91 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGG---------TCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN 91 (478)
T ss_pred cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCc---------eEEeeccccceeEEehhhhhHHhhhhhhcCCccc
Confidence 7999999999999999999999999999998667888 88999983 345556666777777788766
Q ss_pred eeccceeeEE
Q 037740 76 KSSDMSFSVS 85 (130)
Q Consensus 76 ~~~~~~~~~~ 85 (130)
+...++|...
T Consensus 92 ~~~~fdW~~i 101 (478)
T KOG0405|consen 92 EEGSFDWKVI 101 (478)
T ss_pred cccCCcHHHH
Confidence 4444555533
No 165
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.96 E-value=1.5e-09 Score=78.13 Aligned_cols=40 Identities=45% Similarity=0.745 Sum_probs=36.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
.+|+|||+|++||++|..|++.|++|+|||+.+.+||...
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 3799999999999999999999999999999998898643
No 166
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.96 E-value=1.4e-09 Score=77.20 Aligned_cols=39 Identities=46% Similarity=0.727 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+|++|++||+.++++|.+|+|+||.+..||..
T Consensus 10 ~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 10 CDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999988888754
No 167
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.94 E-value=1.8e-09 Score=79.99 Aligned_cols=40 Identities=50% Similarity=0.831 Sum_probs=36.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
.+|+|||||++|++||..|++.|++|+|+|+.+.+||..+
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 3799999999999999999999999999999888998654
No 168
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.7e-09 Score=71.04 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=44.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT 54 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~ 54 (130)
||.+|||+|.+||+||.+++..|.+|.++|--. +....++|..+|.|+++||.
T Consensus 20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~-PtP~GtsWGlGGTCvNVGCI 72 (503)
T KOG4716|consen 20 YDLIVIGGGSGGLACAKEAADLGAKVACLDFVK-PTPQGTSWGLGGTCVNVGCI 72 (503)
T ss_pred ccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc-cCCCCCccccCceeeecccc
Confidence 799999999999999999999999999998532 23355677788899999994
No 169
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.93 E-value=2e-09 Score=80.39 Aligned_cols=41 Identities=37% Similarity=0.624 Sum_probs=37.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~ 41 (130)
+||+|||||++||+||..+++.|++|+|+|+.+.+||....
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 58999999999999999999999999999999889986643
No 170
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.93 E-value=4.5e-09 Score=75.21 Aligned_cols=33 Identities=45% Similarity=0.724 Sum_probs=31.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
++|+|||||++||++|..|++.|++|+|||+++
T Consensus 82 ~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 82 SRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 479999999999999999999999999999964
No 171
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.92 E-value=2.1e-09 Score=73.33 Aligned_cols=34 Identities=44% Similarity=0.696 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-GV-DVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g~-~v~v~E~~~~ 34 (130)
+||+|||||++|+++|++|++. |. +|+|+|+...
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 5999999999999999999995 85 9999999653
No 172
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.92 E-value=2.3e-09 Score=78.19 Aligned_cols=40 Identities=48% Similarity=0.626 Sum_probs=36.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
++|+|||+|++||+||..|++.|++|+|||+.+.+||...
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4799999999999999999999999999999888888643
No 173
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.92 E-value=2.5e-09 Score=72.23 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=33.8
Q ss_pred cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg 37 (130)
||+|||||++|+++|..|++. |++|+|+|+.+..+|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999987 999999999887776
No 174
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.92 E-value=1.6e-09 Score=75.56 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=35.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~ 41 (130)
+||+|||||+.|+++|++|++. |.+|+|+||.+.+|...++
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 6999999999999999999985 7899999998766654443
No 175
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.91 E-value=3.5e-09 Score=70.87 Aligned_cols=36 Identities=44% Similarity=0.852 Sum_probs=33.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+|+|||||++||++|..|+++|++|+|+|+...+-+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 799999999999999999999999999999766654
No 176
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.91 E-value=2.7e-09 Score=75.51 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=35.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+|.+|+++|+.+++.|.+|+|+|+.+..||.+
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 589999999999999999999999999999987777753
No 177
>PRK10262 thioredoxin reductase; Provisional
Probab=98.91 E-value=2.9e-09 Score=70.56 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=34.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
+||+|||+|++||+||..|++.|++++++|+. ..||...
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 58999999999999999999999999999964 5677543
No 178
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.90 E-value=2.6e-09 Score=75.36 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=34.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 5999999999999999999999999999999876655
No 179
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.90 E-value=3.1e-09 Score=73.45 Aligned_cols=39 Identities=49% Similarity=0.629 Sum_probs=36.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
++|+|||+|++||++|..|++.|++|+|+|+.+.+||..
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 479999999999999999999999999999988888854
No 180
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.90 E-value=2.8e-09 Score=75.73 Aligned_cols=38 Identities=34% Similarity=0.645 Sum_probs=35.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||.+..||.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 59999999999999999999999999999998877773
No 181
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.90 E-value=2.9e-09 Score=76.09 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||.+..+|
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 5999999999999999999999999999999776555
No 182
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=3.2e-09 Score=76.04 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=33.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||.+..+|
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 5999999999999999999999999999999875544
No 183
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=3.1e-09 Score=75.32 Aligned_cols=37 Identities=38% Similarity=0.537 Sum_probs=33.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||.+..+|
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 5999999999999999999999999999999866555
No 184
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.89 E-value=3.4e-09 Score=75.03 Aligned_cols=38 Identities=34% Similarity=0.638 Sum_probs=35.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|++|+++|+.+++.|.+|+|+||.+..||.
T Consensus 8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 59999999999999999999999999999998877774
No 185
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.89 E-value=3.2e-09 Score=74.53 Aligned_cols=38 Identities=32% Similarity=0.576 Sum_probs=34.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||||++|++||.+|++.|++|+|+++ .+||.+.
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 6999999999999999999999999999976 3788664
No 186
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=3.5e-09 Score=75.36 Aligned_cols=37 Identities=30% Similarity=0.508 Sum_probs=33.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 5999999999999999999999999999999765544
No 187
>PRK06996 hypothetical protein; Provisional
Probab=98.89 E-value=5.6e-09 Score=71.11 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=43.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC----CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG----VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g----~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+|||||++|+++|..|++.| ++|+|+|+.+...- ..+.... ......+.+++.+|+-..
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~----------~~~~r~~----~l~~~~~~~L~~lg~~~~ 77 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS----------ANDPRAI----ALSHGSRVLLETLGAWPA 77 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC----------CCCceEE----EecHHHHHHHHhCCCchh
Confidence 69999999999999999999987 47999999653211 0000111 124567778888886443
No 188
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.88 E-value=3.4e-09 Score=75.91 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=34.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 4999999999999999999999999999999776555
No 189
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.88 E-value=3.2e-09 Score=72.29 Aligned_cols=44 Identities=36% Similarity=0.588 Sum_probs=39.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~ 44 (130)
+||+|||||+.|+++|+.|++.+ ++|+|+||.+.+|...+..+.
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NS 49 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNS 49 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcc
Confidence 69999999999999999999997 999999999988876666554
No 190
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.88 E-value=3.7e-09 Score=74.97 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=33.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
||+|||+|++|++||+.+++.|.+|+|+||.+..+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 899999999999999999999999999999776554
No 191
>PLN02697 lycopene epsilon cyclase
Probab=98.88 E-value=3.7e-09 Score=74.10 Aligned_cols=35 Identities=37% Similarity=0.456 Sum_probs=32.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
|||+|||+|++|+++|..|++.|++|+++|+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~ 143 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 143 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence 69999999999999999999999999999986444
No 192
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.88 E-value=3.9e-09 Score=74.10 Aligned_cols=38 Identities=34% Similarity=0.648 Sum_probs=34.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
|||+|||||++|++||..|++.|++|+|+|. .+||.+.
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 6999999999999999999999999999975 4788654
No 193
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.87 E-value=3.7e-09 Score=74.86 Aligned_cols=39 Identities=31% Similarity=0.654 Sum_probs=35.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
+||+|||+| +|++||..+++.|.+|+|+||.+..||.+.
T Consensus 17 ~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred eCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 699999999 899999999999999999999888888543
No 194
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.87 E-value=4.4e-09 Score=73.08 Aligned_cols=39 Identities=46% Similarity=0.732 Sum_probs=36.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
++|+|||+|++|+++|..|++.|++|+|+|+.+.+||..
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l 182 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL 182 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee
Confidence 479999999999999999999999999999988888854
No 195
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=3.8e-09 Score=75.20 Aligned_cols=37 Identities=35% Similarity=0.526 Sum_probs=33.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
.||+|||+|++||+||+.+++.|.+|+|+||.+..+|
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 4899999999999999999999999999999776554
No 196
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.87 E-value=3.6e-09 Score=74.83 Aligned_cols=36 Identities=31% Similarity=0.590 Sum_probs=32.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~g 36 (130)
|||+|||||+||+.||+.+++.|.+|+++|++. .+|
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG 41 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG 41 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence 799999999999999999999999999999973 444
No 197
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=4.4e-09 Score=74.83 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=33.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.|||+||+.+++.|.+|+|+||....+|
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 4999999999999999999999999999999866555
No 198
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=3.9e-09 Score=75.22 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 5999999999999999999999999999999765544
No 199
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.86 E-value=3.2e-09 Score=71.81 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=31.4
Q ss_pred cEEEEccCHHHHHHHHHH--HHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVL--AKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l--~~~g~~v~v~E~~~~~ 35 (130)
||+|||+|+||+++|..| ++.|.+|+|+|+++..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 7779999999987765
No 200
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.86 E-value=4.2e-09 Score=73.12 Aligned_cols=38 Identities=42% Similarity=0.789 Sum_probs=34.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
.|++|||+|++|+.+|..+++.|.+|+++|+. ..||.+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c 39 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAA 39 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcc
Confidence 37999999999999999999999999999985 578833
No 201
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=3.7e-09 Score=75.83 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=33.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+||+|||+|.+||+||+.+++.|.+|+|+|+...++
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 499999999999999999999999999999866654
No 202
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.85 E-value=6.2e-09 Score=71.95 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=35.6
Q ss_pred cEEEEccCHHHHHHHHHHH-HCCCcEEEEecCCCCCCCeee
Q 037740 2 QVAVIGGGISGLASAFVLA-KAGVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~-~~g~~v~v~E~~~~~gg~~~~ 41 (130)
.|+|||+||+|++||..|. +.|++|+|||+.+.+||..+.
T Consensus 41 rVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 41 KVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred EEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 6999999999999999765 569999999999999997654
No 203
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=5.6e-09 Score=74.24 Aligned_cols=37 Identities=24% Similarity=0.515 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC---CcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG---VDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g---~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.| .+|+|+||....++
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 59999999999999999999998 89999999876655
No 204
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.85 E-value=5.2e-09 Score=72.85 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=35.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~ 41 (130)
+||+|||||++|+++|+.|++. +.+|+|+||.+.+|-..+.
T Consensus 7 ~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~ 49 (497)
T PRK13339 7 KDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN 49 (497)
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence 5999999999999999999998 8999999995567755553
No 205
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.84 E-value=6.3e-09 Score=71.69 Aligned_cols=67 Identities=33% Similarity=0.443 Sum_probs=48.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+|+|||+||+||++|..|++.|+.|+++|+.+..||+... .+....+........++.++..|++..
T Consensus 125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y--------GIP~~kl~k~i~d~~i~~l~~~Gv~~~ 191 (457)
T COG0493 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY--------GIPDFKLPKDILDRRLELLERSGVEFK 191 (457)
T ss_pred EEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe--------cCchhhccchHHHHHHHHHHHcCeEEE
Confidence 6899999999999999999999999999999999985432 222222222223445567777775444
No 206
>PRK12839 hypothetical protein; Provisional
Probab=98.84 E-value=6.3e-09 Score=73.82 Aligned_cols=40 Identities=35% Similarity=0.600 Sum_probs=36.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
+||+|||+|.+|+++|+.+++.|.+|+|+|+....||.+.
T Consensus 9 ~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 5899999999999999999999999999999888887643
No 207
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.84 E-value=6.6e-09 Score=74.76 Aligned_cols=40 Identities=35% Similarity=0.737 Sum_probs=36.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
++|+|||+|++|+++|..|++.|++|+|+|+.+.+||..+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 4799999999999999999999999999999988888653
No 208
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.83 E-value=8.4e-09 Score=71.62 Aligned_cols=40 Identities=48% Similarity=0.783 Sum_probs=36.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
.+|+|||+|++|+++|..|++.|++|+++|+.+.+||..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 4799999999999999999999999999999998888554
No 209
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.82 E-value=8.4e-09 Score=74.11 Aligned_cols=40 Identities=43% Similarity=0.715 Sum_probs=36.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
.+|+|||+|++||++|..|++.|++|+|||+.+.+||..+
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3699999999999999999999999999999998888543
No 210
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.82 E-value=4.5e-09 Score=68.83 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~g 36 (130)
||++|||+|.+|+.+|.+|++.+ .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 79999999999999999999997 7999999865543
No 211
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.82 E-value=7.6e-09 Score=74.43 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=33.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.|.+|+|+|+.+..++
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 5999999999999999999999999999999776554
No 212
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.81 E-value=8.1e-09 Score=71.55 Aligned_cols=39 Identities=46% Similarity=0.732 Sum_probs=35.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
++|+|||+|++|+++|..|++.|++|+|+|+.+.+||..
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 479999999999999999999999999999988888743
No 213
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.81 E-value=8.7e-09 Score=71.54 Aligned_cols=33 Identities=42% Similarity=0.752 Sum_probs=31.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+||+|||+|++||+||+.+++.|.+|+|+||.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999975
No 214
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.81 E-value=6.7e-09 Score=73.41 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=32.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|.|||+||+.++ .|.+|+|+||.+..||.
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred CCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 59999999999999999986 59999999998776663
No 215
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=7.7e-09 Score=73.49 Aligned_cols=37 Identities=24% Similarity=0.561 Sum_probs=32.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg 37 (130)
+||+|||+|++||+||+.+++. |.+|+|+||....||
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 5999999999999999999987 489999999766554
No 216
>PLN02815 L-aspartate oxidase
Probab=98.80 E-value=8.6e-09 Score=73.34 Aligned_cols=36 Identities=33% Similarity=0.557 Sum_probs=33.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++.| +|+|+||.+..||
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 59999999999999999999999 9999999887666
No 217
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.80 E-value=9.8e-09 Score=63.51 Aligned_cols=33 Identities=42% Similarity=0.765 Sum_probs=30.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
||+|||||++|+++|..|++.+.+++++|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988653
No 218
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.80 E-value=8.3e-09 Score=71.04 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=32.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|.+||+||..+. .|.+|+|+||.+..+|.
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 59999999999999999974 79999999998776663
No 219
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.79 E-value=9.9e-09 Score=73.34 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=32.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g 36 (130)
+||+|||+|.|||+||+.+++. |.+|+|+||.+..+
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 5999999999999999999998 99999999976543
No 220
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.79 E-value=1e-08 Score=77.81 Aligned_cols=39 Identities=44% Similarity=0.786 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
.||+|||+|.+|++||+.+++.|.+|+|+||.+..||..
T Consensus 410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 489999999999999999999999999999998888754
No 221
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.78 E-value=1.2e-08 Score=72.52 Aligned_cols=40 Identities=38% Similarity=0.623 Sum_probs=36.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
+||+|||+|.+|+++|..+++.|.+|+|+|+.+..||.+.
T Consensus 13 ~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 13 CDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 5999999999999999999999999999999887787543
No 222
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.78 E-value=1.1e-08 Score=69.62 Aligned_cols=35 Identities=46% Similarity=0.638 Sum_probs=31.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 38999999999999999999999999999976544
No 223
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.78 E-value=1.3e-08 Score=71.12 Aligned_cols=37 Identities=38% Similarity=0.623 Sum_probs=33.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
.||+|||+|++||+||+.+++.|. |+|+||.+..+|.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 599999999999999999999997 9999998766653
No 224
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.78 E-value=1e-08 Score=71.55 Aligned_cols=36 Identities=28% Similarity=0.603 Sum_probs=31.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-C-CcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-G-VDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g-~~v~v~E~~~~~g 36 (130)
+||+|||||+.|+++|+.|++. + .+|+|+||.+.++
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 6999999999999999999996 3 6999999976544
No 225
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.76 E-value=1.4e-08 Score=72.30 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=33.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg 37 (130)
+||+|||+|.+||+||+.+++. |.+|+|+||....+|
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 5999999999999999999987 579999999876665
No 226
>PRK08275 putative oxidoreductase; Provisional
Probab=98.76 E-value=1.5e-08 Score=71.71 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=31.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~ 35 (130)
+||+|||+|.+||+||+.+++. |.+|+|+||.+..
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 5999999999999999999986 7899999997754
No 227
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=1.6e-08 Score=71.50 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=32.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC-CCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS-LGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~-~gg~ 38 (130)
.||+|||+|.+||+||+.+ +.|.+|+|+||.+. .||.
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 5999999999999999999 89999999999754 3443
No 228
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.75 E-value=8.9e-09 Score=70.24 Aligned_cols=34 Identities=41% Similarity=0.778 Sum_probs=32.0
Q ss_pred EEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 4 AVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 4 ~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+|||||++|++||+.+++.|.+|+|+|+++.+|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccc
Confidence 5999999999999999999999999999888775
No 229
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.75 E-value=1.6e-08 Score=71.93 Aligned_cols=39 Identities=38% Similarity=0.531 Sum_probs=34.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+|++||+||+.+++. |.+|+|+||....++.+
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 5999999999999999999987 58999999987766633
No 230
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.74 E-value=1.6e-08 Score=74.62 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
.+|+|||+|||||+||+.|++.|++|+|+|+....|
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITL 419 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccc
Confidence 369999999999999999999999999999865433
No 231
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.74 E-value=1.9e-08 Score=71.01 Aligned_cols=38 Identities=45% Similarity=0.669 Sum_probs=35.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|.|||.||..+++.|.+|+|+||.+..+|+
T Consensus 7 ~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 69999999999999999999999999999998877654
No 232
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1.7e-08 Score=70.80 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
.||+|||+|.|||+||..+++ |.+|+|+||.+..+|.
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 499999999999999999976 8999999998776664
No 233
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.73 E-value=2.2e-08 Score=69.72 Aligned_cols=39 Identities=44% Similarity=0.584 Sum_probs=35.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||||++|+-+|..++.+|++|+++|+++...|+.
T Consensus 13 ~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred CCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 699999999999999999999999999999988766644
No 234
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.73 E-value=2.3e-08 Score=70.35 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=35.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
|||+|||+|++|+.+|..|+++|++|+++|+....|+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 7999999999999999999999999999999887775
No 235
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.73 E-value=2.2e-08 Score=68.48 Aligned_cols=34 Identities=50% Similarity=0.799 Sum_probs=31.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
||+|||||++|+.+|..|++.|.+|+|+|+.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 7999999999999999999999999999986654
No 236
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=2.2e-08 Score=71.28 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=31.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+||+|||+|++||+||+.+++. .+|+|+||.+..+|
T Consensus 6 ~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred ccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 5999999999999999999986 99999999765444
No 237
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.71 E-value=2.6e-08 Score=70.30 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=33.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
+||+|||+|.+||+||+.+++. .+|+|+||....+|.
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 5999999999999999999887 899999998766663
No 238
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.71 E-value=3.1e-08 Score=69.15 Aligned_cols=39 Identities=46% Similarity=0.698 Sum_probs=35.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
.+|+|||+|++|+++|..|++.|++|+|+|+.+.+||..
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l 182 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL 182 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee
Confidence 379999999999999999999999999999988888754
No 239
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.71 E-value=3.2e-08 Score=70.30 Aligned_cols=38 Identities=45% Similarity=0.783 Sum_probs=35.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+|+|||+|++||++|..|++.|++|+|+|+.+.+||..
T Consensus 139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l 176 (564)
T PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM 176 (564)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee
Confidence 69999999999999999999999999999999888854
No 240
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.71 E-value=3.2e-08 Score=70.45 Aligned_cols=39 Identities=38% Similarity=0.713 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+||+|||+|.+|+++|+.+++.|.+|+|+|+....||.+
T Consensus 17 ~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 589999999999999999999999999999988888754
No 241
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.68 E-value=3.8e-08 Score=70.32 Aligned_cols=33 Identities=36% Similarity=0.722 Sum_probs=30.5
Q ss_pred cEEEEccCHHHHHHHHHHH----HCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLA----KAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~----~~g~~v~v~E~~~~ 34 (130)
||+|||+|.|||+||+.++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 67999999999654
No 242
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.67 E-value=3.1e-08 Score=72.54 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=31.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~ 34 (130)
++|+|||||++||++|+.|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999765
No 243
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.65 E-value=6.6e-08 Score=64.96 Aligned_cols=40 Identities=43% Similarity=0.549 Sum_probs=36.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
.+|+|||+|++|+++|..|++.|++|+++|+.+.+||...
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 3799999999999999999999999999999988888543
No 244
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.64 E-value=7.2e-08 Score=65.82 Aligned_cols=62 Identities=27% Similarity=0.505 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcc--cccccccccCCCChhHHHHHHHcCCCce
Q 037740 14 ASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD--LDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 14 ~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
+||+.|+++|++|+|+|+++.+||++.+...+++. +|.|.+++.. ...++.++++++|+...
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~ 64 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG-AYTNLLALLRRIGAEPR 64 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc-ccHHHHHHHHHhCCchh
Confidence 48999999999999999999999999999887655 8999988874 35678899999998654
No 245
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.63 E-value=6.2e-08 Score=66.39 Aligned_cols=32 Identities=47% Similarity=0.738 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
|||+|||+|++|+++|+.+++.|.+|+|+|+.
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 69999999999999999999999999999985
No 246
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.63 E-value=4.4e-08 Score=69.99 Aligned_cols=34 Identities=35% Similarity=0.471 Sum_probs=31.2
Q ss_pred EEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
|+|||+|++||+||+.+++.|.+|+|+||.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6899999999999999999999999999977444
No 247
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.61 E-value=5.3e-08 Score=72.63 Aligned_cols=39 Identities=49% Similarity=0.730 Sum_probs=36.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+.|+|||+||+||+||-.|.+.|+.|+|+||.+++||..
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll 1824 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLL 1824 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCcee
Confidence 368999999999999999999999999999999999854
No 248
>PRK13984 putative oxidoreductase; Provisional
Probab=98.61 E-value=8.9e-08 Score=68.55 Aligned_cols=40 Identities=38% Similarity=0.700 Sum_probs=36.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~ 40 (130)
.+|+|||+|++|+++|..|.+.|++|+|+|+.+.+||...
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3689999999999999999999999999999888888543
No 249
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.61 E-value=3.7e-08 Score=66.90 Aligned_cols=56 Identities=36% Similarity=0.538 Sum_probs=46.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLF 56 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~ 56 (130)
||++|||+|.-||.||.+|++.|.+|+|+|++...||.+.+..+ .|+.+..+..++
T Consensus 15 ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~ 71 (561)
T KOG4254|consen 15 YDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLL 71 (561)
T ss_pred cceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHH
Confidence 79999999999999999999999999999998778887665554 677776655443
No 250
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.60 E-value=7.2e-08 Score=63.26 Aligned_cols=31 Identities=35% Similarity=0.760 Sum_probs=29.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK 31 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~ 31 (130)
|||+|||||++|++||+.|+++|.+++++.+
T Consensus 3 fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~ 33 (421)
T COG3075 3 FDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33 (421)
T ss_pred ccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 7999999999999999999999999999976
No 251
>PRK02106 choline dehydrogenase; Validated
Probab=98.60 E-value=6.1e-08 Score=68.80 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=31.2
Q ss_pred CcEEEEccCHHHHHHHHHHHH-CCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E~~~ 33 (130)
||++|||+|.+|+.+|.+|++ .|.+|+|+|+.+
T Consensus 6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 799999999999999999999 799999999864
No 252
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.59 E-value=9e-08 Score=71.24 Aligned_cols=34 Identities=41% Similarity=0.646 Sum_probs=31.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+||+|||+|.+||+||+.+++.|.+|+|+||...
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 5999999999999999999999999999999764
No 253
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.55 E-value=3.1e-07 Score=48.76 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=32.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
.++|||+|+.|+-.|..|++.|.+|+++++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999987764
No 254
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.55 E-value=1.5e-07 Score=65.27 Aligned_cols=58 Identities=34% Similarity=0.592 Sum_probs=37.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCC---CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740 2 QVAVIGGGISGLASAFVLAKAG---VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK 76 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g---~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 76 (130)
||+|||||++|..+|..|++.+ .+|+|+|+...+ .+.+|-.+ .+.+..+++.+|+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~------------~~~vGe~~-----~p~~~~~~~~lgi~e~ 61 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP------------RIGVGEST-----LPSLRPFLRRLGIDEA 61 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---------------SSEEE-------THHHHCHHHHT--HH
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC------------CCCccccc-----hHHHHHHHHHcCCChH
Confidence 7999999999999999999997 899999985432 23344433 3445567788887655
No 255
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.55 E-value=2.4e-07 Score=55.42 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=44.2
Q ss_pred EEEccCHHHHHHHHHHHHC-----CCcEEEEecCCCCC-CCeeeec-ccCcccccccccccC--CCC-hhHHHHHHHcC
Q 037740 4 AVIGGGISGLASAFVLAKA-----GVDVVLYEKEDSLG-GHAKTIT-IDGVDLDLGFTLFNH--ATS-PNTMEFFDSLG 72 (130)
Q Consensus 4 ~IiG~G~~Gl~~a~~l~~~-----g~~v~v~E~~~~~g-g~~~~~~-~~~~~~~~g~~~~~~--~~~-~~~~~~~~~~g 72 (130)
+|||+|++|++++..|.+. ..+|+|||+++. | |.+.... .....++.....++. ... .++.+|++..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~ 78 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANG 78 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcC
Confidence 5999999999999999988 468999999655 5 5433322 223344554433322 223 56667766555
No 256
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.54 E-value=1.8e-07 Score=66.39 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=32.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
|||+|||+|++|+.+|..+++.|.+|+++|++...+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~ 36 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTI 36 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 799999999999999999999999999999875433
No 257
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.53 E-value=1.4e-07 Score=63.75 Aligned_cols=35 Identities=37% Similarity=0.714 Sum_probs=28.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEE-ecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLY-EKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~-E~~~~~g 36 (130)
||+|||||.||+.||+.+++.|.+|+++ ++.+.+|
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~ 36 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG 36 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence 8999999999999999999999999999 4434444
No 258
>PRK09897 hypothetical protein; Provisional
Probab=98.52 E-value=2.2e-07 Score=65.50 Aligned_cols=41 Identities=24% Similarity=0.591 Sum_probs=34.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCC-CCeee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLG-GHAKT 41 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~g-g~~~~ 41 (130)
++|+|||+|++|+++|..|.+.+ .+|+|||++..+| |.+.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 47999999999999999999864 5899999988777 54433
No 259
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.51 E-value=1.6e-07 Score=61.72 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=31.9
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.|++|||+|+-|+++|++|++.|.++.++|+.+.+
T Consensus 8 ~~viiVGAGVfG~stAyeLaK~g~killLeqf~~p 42 (399)
T KOG2820|consen 8 RDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLP 42 (399)
T ss_pred eeEEEEcccccchHHHHHHHhcCCeEEEEeccCCC
Confidence 37999999999999999999999999999986544
No 260
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.51 E-value=1.4e-07 Score=66.30 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=29.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.||+|||+|.+||+||+.++ +.+|+|+||.+.
T Consensus 10 ~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 10 GRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 48999999999999999986 679999999775
No 261
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.50 E-value=1.8e-07 Score=61.88 Aligned_cols=36 Identities=42% Similarity=0.725 Sum_probs=31.7
Q ss_pred cEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg 37 (130)
||+|||||..|++.|+.|.++ |++|+|+|+++...-
T Consensus 88 dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 88 DVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred CEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 799999999999999999875 799999999875443
No 262
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.49 E-value=2.5e-07 Score=63.19 Aligned_cols=33 Identities=36% Similarity=0.681 Sum_probs=31.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
||++|||+|++|+++|+.+++.|.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 799999999999999999999999999999854
No 263
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=8.6e-07 Score=60.86 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=49.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC-CCeeeecccCccccccccccc---CCCChhHHHHHHHc
Q 037740 1 MQVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG-GHAKTITIDGVDLDLGFTLFN---HATSPNTMEFFDSL 71 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g-g~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~ 71 (130)
++|+|||+|++|.+.|.+|.+. ...+.|+|+.+..| |.+++....-..+++....++ +..+.++++|++..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~ 79 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ 79 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhc
Confidence 6899999999999999999986 22399999988887 445444443344555443222 23356788888776
No 264
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.41 E-value=6.5e-07 Score=59.31 Aligned_cols=40 Identities=43% Similarity=0.716 Sum_probs=34.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC--CCCCCCee
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE--DSLGGHAK 40 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~--~~~gg~~~ 40 (130)
+||+|+|+|++||.||.+|+.+|.+|+++|.. ..+||.+.
T Consensus 6 ~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred ccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 58999999999999999999999999999763 45666543
No 265
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.40 E-value=3e-07 Score=65.08 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=30.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
||++|||+|++|..+|..|++.|.+|+|+|+.
T Consensus 8 ~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 8 YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred CCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 69999999999999999999889999999985
No 266
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.38 E-value=7.5e-08 Score=59.75 Aligned_cols=38 Identities=34% Similarity=0.646 Sum_probs=33.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~ 38 (130)
.||+|+|+|.+||++|+..+++ ..+|.++|..-.+||.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 3899999999999999999965 7799999997777763
No 267
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.37 E-value=4.4e-07 Score=64.16 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=30.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~ 33 (130)
|++|||+|.+|+.+|.+|++.+ .+|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 7999999864
No 268
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.36 E-value=4.8e-07 Score=62.42 Aligned_cols=34 Identities=44% Similarity=0.774 Sum_probs=30.3
Q ss_pred EEccCHHHHHHHHHHHHCCCcEEEEecCCC--CCCC
Q 037740 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDS--LGGH 38 (130)
Q Consensus 5 IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~--~gg~ 38 (130)
|||+|.+|++||+.+++.|.+|+|+||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 799999999999999999999999999774 3553
No 269
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.33 E-value=1.2e-06 Score=58.72 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=34.7
Q ss_pred cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCee
Q 037740 2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAK 40 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~ 40 (130)
.|.|||+||||+.+|..|.++ +..|.|+|+.+.+.|..+
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 589999999999999999985 789999999998888543
No 270
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.33 E-value=9.8e-07 Score=60.70 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=35.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~ 44 (130)
|||+|+|.|+.-+..|..|++.|.+|+.+|+++..||.+.+.+.
T Consensus 5 yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l 48 (438)
T PF00996_consen 5 YDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNL 48 (438)
T ss_dssp ESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-H
T ss_pred ceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccH
Confidence 79999999999999999999999999999999999999988885
No 271
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.31 E-value=1.1e-06 Score=60.79 Aligned_cols=36 Identities=28% Similarity=0.620 Sum_probs=31.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLG 36 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~g 36 (130)
.+|+|||+|++|+++|..|++.+ .+|+|+|+++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 47999999999999999999875 5899999977643
No 272
>PLN02785 Protein HOTHEAD
Probab=98.31 E-value=9.4e-07 Score=63.11 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=30.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
||++|||+|.+|+.+|..|++ +.+|+|+|+.+
T Consensus 56 yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 56 YDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred CCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 799999999999999999999 69999999864
No 273
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.29 E-value=2.4e-06 Score=59.07 Aligned_cols=41 Identities=29% Similarity=0.508 Sum_probs=35.3
Q ss_pred EEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeec
Q 037740 3 VAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTIT 43 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~ 43 (130)
.=|||+|+|+|+||..|.+. |.+|+++|+.+..||..-+..
T Consensus 5 AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 5 AYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred EEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 45899999999999999996 669999999999998665443
No 274
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.23 E-value=2.3e-06 Score=59.19 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=30.8
Q ss_pred cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g 36 (130)
+|+|||||++|+++|..|.+. +.+|+|+|+++..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 699999999999999999886 67999999976543
No 275
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.21 E-value=2.6e-06 Score=58.21 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=30.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~~ 35 (130)
+|+|||+|++|++||..|.+.+. +|+++++.+..
T Consensus 5 ~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 69999999999999999999876 79999886543
No 276
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.20 E-value=6.2e-07 Score=62.41 Aligned_cols=39 Identities=33% Similarity=0.542 Sum_probs=35.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
|||+|||||.+|.-||.-.+-+|+++.++|+++..-|+.
T Consensus 68 fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 68 FDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred ccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 799999999999999999999999999999988766643
No 277
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=9.2e-07 Score=58.78 Aligned_cols=36 Identities=36% Similarity=0.651 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~ 38 (130)
|||+|||+||+|-+||.+.+++|.|+-++ ..+.||.
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQ 247 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQ 247 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCe
Confidence 79999999999999999999999999766 2345664
No 278
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6.8e-06 Score=51.64 Aligned_cols=42 Identities=31% Similarity=0.456 Sum_probs=33.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEec----CCCCCCCeeeec
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK----EDSLGGHAKTIT 43 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~----~~~~gg~~~~~~ 43 (130)
.|+|||+||++..||++++++.++.++||. +-.+||...+..
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 489999999999999999999999999995 223456544443
No 279
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.13 E-value=2.1e-06 Score=56.47 Aligned_cols=44 Identities=41% Similarity=0.534 Sum_probs=37.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~~~~ 44 (130)
||++|||+|+.|++.|.+|.-+ +.+|.|+|+....+-+-++.+.
T Consensus 49 ~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNS 94 (453)
T KOG2665|consen 49 YDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNS 94 (453)
T ss_pred ccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeeccccc
Confidence 7999999999999999999876 9999999998777655554444
No 280
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.12 E-value=3.2e-06 Score=58.36 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
||+|||+|++||++|+.|... ++|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 799999999999999999988 99999998543
No 281
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.09 E-value=6.4e-06 Score=54.40 Aligned_cols=38 Identities=42% Similarity=0.720 Sum_probs=34.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
.|+|||+|++||+|+..+...|-.|+++|++...||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 38999999999999999999988899999999999854
No 282
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=5.1e-06 Score=56.27 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=42.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID 45 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~ 45 (130)
|||+|||.|..=...|...++.|.+|+-+|+++..||.|+++...
T Consensus 9 fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 9 FDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred ccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 799999999999999999999999999999999999999998874
No 283
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.04 E-value=6.5e-06 Score=56.82 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=30.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.+|+|||||.+|+.+|..|.+.+.+|+|||+++.
T Consensus 11 ~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 11 PNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 3799999999999999999877899999998654
No 284
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.03 E-value=7e-06 Score=58.28 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSL 35 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~ 35 (130)
||.+|||||.||+..|..|++. .++|+++|+....
T Consensus 58 yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 58 YDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 7999999999999999999997 7899999985443
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.00 E-value=1.2e-05 Score=54.74 Aligned_cols=38 Identities=45% Similarity=0.626 Sum_probs=35.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~ 39 (130)
+++|||+|+.|+.+|..+.+.|.+|+++|+.+.+++..
T Consensus 138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 68999999999999999999999999999999988843
No 286
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.99 E-value=1.8e-05 Score=53.17 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=26.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~ 34 (130)
||+++||.||++|+.|..|...+ .+++.||+.+.
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 69999999999999999999985 89999998653
No 287
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.91 E-value=2.6e-05 Score=53.06 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=29.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~ 34 (130)
.+++|||+|++|+++|..|.+. ..+|+|+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 3799999999999999999875 568999988653
No 288
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.84 E-value=2.4e-05 Score=52.90 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=28.5
Q ss_pred cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~ 34 (130)
+|+|||||++|+.+|..+.++ +.+|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999643 689999998654
No 289
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.82 E-value=7.4e-06 Score=53.24 Aligned_cols=36 Identities=31% Similarity=0.818 Sum_probs=31.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCC------CcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG------VDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g------~~v~v~E~~~~~gg 37 (130)
.|+|+|||+.|.++|++|++.+ ..+++||.....||
T Consensus 12 ~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 12 KIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred EEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 5899999999999999999986 68999999665544
No 290
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.81 E-value=3.8e-05 Score=46.03 Aligned_cols=32 Identities=41% Similarity=0.648 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||+|..|.+.|..|+++|++|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998864
No 291
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.74 E-value=4.9e-05 Score=51.70 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=28.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHC----CCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA----GVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~ 32 (130)
|||+|+|||+.|++.|..|... ..+|.++|..
T Consensus 37 ~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 37 YDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 7999999999999999999865 5699999976
No 292
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.72 E-value=6.3e-05 Score=46.12 Aligned_cols=33 Identities=42% Similarity=0.701 Sum_probs=28.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.|.|||+|.-|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 488999999999999999999999999998653
No 293
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=4.6e-05 Score=53.57 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
|||+|||||-||+-||...++.|.++.++-.+
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 79999999999999999999999999988653
No 294
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.69 E-value=7.3e-05 Score=51.67 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=33.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG 37 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg 37 (130)
+||++||||+.+.+.+..|++. ..++.|+||-+.++.
T Consensus 4 ~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ 42 (488)
T PF06039_consen 4 YDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVAL 42 (488)
T ss_pred eeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchh
Confidence 6999999999999999999997 789999999877663
No 295
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.69 E-value=7.5e-05 Score=52.09 Aligned_cols=33 Identities=42% Similarity=0.575 Sum_probs=30.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.|.|||.|.+|+++|..|.+.|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998654
No 296
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=6.4e-05 Score=49.91 Aligned_cols=34 Identities=41% Similarity=0.705 Sum_probs=30.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.|-|||+|++|.-||+.++++|..|.++|..+.-
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 3779999999999999999999999999986543
No 297
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.65 E-value=0.0001 Score=51.74 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|+|||+|.+|+++|..|.+.|++|+++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999999999999754
No 298
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00013 Score=49.08 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=40.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~ 44 (130)
|||+|+|.|+.-+..+..|+..|.+|+++|+++..|+...+.+.
T Consensus 7 yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl 50 (434)
T COG5044 7 YDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTL 50 (434)
T ss_pred ccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeH
Confidence 79999999999999999999999999999999999987666554
No 299
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00013 Score=46.38 Aligned_cols=34 Identities=32% Similarity=0.603 Sum_probs=31.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.+++|||+|..|.+.|..|.+.|+.|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4689999999999999999999999999998753
No 300
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=7.7e-05 Score=51.83 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
|||+|||||-||+-||...++.|.+++++..+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 79999999999999999999999999998653
No 301
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.58 E-value=0.00014 Score=49.82 Aligned_cols=33 Identities=33% Similarity=0.674 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~ 34 (130)
.|+|||||.+|+.+|..|.+.- .+++++|+++.
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 5899999999999999999974 89999999764
No 302
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.58 E-value=0.00012 Score=54.37 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=29.4
Q ss_pred EEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC
Q 037740 3 VAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG 36 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g 36 (130)
|+|||+|++|+++|..|.+. +++|+|||+.+.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 58999999999999998875 57999999977654
No 303
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.57 E-value=0.00017 Score=49.49 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+++|||+|..|+-+|..|.+.|.+|+++|+.+.+.+
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 589999999999999999999999999998766543
No 304
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.55 E-value=0.00018 Score=50.49 Aligned_cols=34 Identities=38% Similarity=0.684 Sum_probs=31.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|.+|+-+|..|++.|.+|+++|+.+.+
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 5899999999999999999999999999987654
No 305
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.55 E-value=0.00022 Score=49.52 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=31.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|.+|+.+|..+++.|.+|+++|+.+.+.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 193 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL 193 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence 58999999999999999999999999999976554
No 306
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.51 E-value=0.0002 Score=53.53 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=30.4
Q ss_pred cEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~g 36 (130)
+|+|||+|++|+.+|..|.+. +++|+||++.+.++
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 699999999999999999764 57999999877654
No 307
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.51 E-value=0.00019 Score=47.65 Aligned_cols=32 Identities=44% Similarity=0.716 Sum_probs=30.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||+|.-|.+.|..|++.|++|+++|+++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 68999999999999999999999999999865
No 308
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.50 E-value=0.00014 Score=44.86 Aligned_cols=34 Identities=38% Similarity=0.537 Sum_probs=27.1
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+.|.|||.|-.||..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4689999999999999999999999999998653
No 309
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.49 E-value=0.00031 Score=41.61 Aligned_cols=31 Identities=39% Similarity=0.516 Sum_probs=28.8
Q ss_pred EEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
|+|+|+|..|+..|..|++.|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998754
No 310
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.48 E-value=0.00026 Score=49.47 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=31.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus 172 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 172 SLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 58999999999999999999999999999876543
No 311
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.47 E-value=0.00028 Score=48.07 Aligned_cols=35 Identities=40% Similarity=0.580 Sum_probs=31.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-+|..|.+.|.+|+++++.+.+.
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 58999999999999999999999999999876543
No 312
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00024 Score=51.27 Aligned_cols=32 Identities=44% Similarity=0.684 Sum_probs=27.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEE-EEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVV-LYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~-v~E~~~ 33 (130)
||+|||+|..|.++|++|++.|.+.. ++|+..
T Consensus 41 ~vvViggG~~g~~~~yhlak~g~k~avlle~~~ 73 (856)
T KOG2844|consen 41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSR 73 (856)
T ss_pred cEEEEcCCchhHHHHHHHHHccccceEEEeeee
Confidence 79999999999999999999999854 555543
No 313
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.42 E-value=0.00035 Score=49.03 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=31.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 58999999999999999999999999999876554
No 314
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.40 E-value=0.00038 Score=48.70 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=31.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 58999999999999999999999999999876543
No 315
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.40 E-value=0.0004 Score=48.55 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=31.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|.+|+-+|..+.+.|.+|+++|+.+.+.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll 206 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 58999999999999999999999999999876543
No 316
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.39 E-value=0.00041 Score=48.43 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=32.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
.++|||||..|+=.|..+++.|.+|+|+|+.+.+-.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 489999999999999999999999999999877643
No 317
>PRK07846 mycothione reductase; Reviewed
Probab=97.39 E-value=0.00041 Score=48.48 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=31.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 58999999999999999999999999999876543
No 318
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.36 E-value=0.00046 Score=48.26 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=31.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 208 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL 208 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence 58999999999999999999999999999876553
No 319
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.35 E-value=0.00044 Score=48.19 Aligned_cols=32 Identities=44% Similarity=0.714 Sum_probs=29.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.++|+|+|..|+.+|..|++.|++|+++|++.
T Consensus 7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999999999999864
No 320
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.33 E-value=0.00044 Score=45.45 Aligned_cols=32 Identities=41% Similarity=0.629 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|.+.|..+++.|++|+++|+++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 58999999999999999999999999999864
No 321
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.33 E-value=0.00041 Score=45.61 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=29.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999999999999864
No 322
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.00052 Score=48.11 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=30.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-+|..+++.|.+|+++|+.+.+
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 5899999999999999999999999999986644
No 323
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.32 E-value=0.00054 Score=47.83 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 58999999999999999999999999999876543
No 324
>PRK06370 mercuric reductase; Validated
Probab=97.32 E-value=0.00059 Score=47.77 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=31.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-+|..+++.|.+|+++|+.+.+.
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 58999999999999999999999999999876554
No 325
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.00056 Score=47.97 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=31.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 58999999999999999999999999999866543
No 326
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.32 E-value=0.00064 Score=42.59 Aligned_cols=32 Identities=38% Similarity=0.482 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|+|||||..|+..+..|.+.|.+|+|+.+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 58999999999999999999999999998754
No 327
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.31 E-value=0.00055 Score=47.40 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=31.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 5899999999999999999999999999987654
No 328
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.30 E-value=0.00058 Score=47.74 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 58999999999999999999999999999876543
No 329
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.30 E-value=0.00051 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..++..|++|+++|+++
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 47899999999999999999999999999864
No 330
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00013 Score=49.36 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=40.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~ 44 (130)
|||+|+|.|+.=+..+..|+..|.+|+.+|||+..||...+.+.
T Consensus 5 yDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl 48 (440)
T KOG1439|consen 5 YDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTL 48 (440)
T ss_pred eeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeH
Confidence 79999999999999999999999999999999999997776654
No 331
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.26 E-value=0.00098 Score=38.93 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=28.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCc-EEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~ 32 (130)
.++|||+|-+|.+++..|...|.+ ++|+.|+
T Consensus 14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 14 RVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 589999999999999999999987 9999885
No 332
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.25 E-value=0.00069 Score=44.71 Aligned_cols=32 Identities=38% Similarity=0.561 Sum_probs=29.5
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.+|.|||+|..|...|..|++.|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36899999999999999999999999999884
No 333
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.25 E-value=0.00082 Score=47.00 Aligned_cols=35 Identities=40% Similarity=0.716 Sum_probs=31.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 58999999999999999999999999999877554
No 334
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.24 E-value=0.00058 Score=44.95 Aligned_cols=33 Identities=42% Similarity=0.683 Sum_probs=30.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.|.|||+|.-|...|..+++.|++|+++|+++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 478999999999999999999999999998654
No 335
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.24 E-value=0.00073 Score=47.24 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=31.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 5899999999999999999999999999987654
No 336
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.24 E-value=0.00066 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=31.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..|++.|.+|+++++.+.+.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 58999999999999999999999999999876543
No 337
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.24 E-value=0.0006 Score=44.93 Aligned_cols=32 Identities=44% Similarity=0.535 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..++++|++|+++|+++
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58899999999999999999999999999864
No 338
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.23 E-value=0.00042 Score=38.57 Aligned_cols=31 Identities=35% Similarity=0.512 Sum_probs=29.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.|+|||+|..|...+..|.+.|.+|+|+.+.
T Consensus 9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 9 RVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5899999999999999999999999999875
No 339
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.22 E-value=0.0008 Score=47.30 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=31.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-+|..+++.|.+|+++|+.+.+
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 5899999999999999999999999999987654
No 340
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.22 E-value=0.00077 Score=44.56 Aligned_cols=31 Identities=35% Similarity=0.484 Sum_probs=29.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK 31 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~ 31 (130)
.+|.|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3689999999999999999999999999987
No 341
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.21 E-value=0.0009 Score=40.16 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=27.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK 31 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~ 31 (130)
.|+|||||..|+..+..|.+.|.+|+|+.+
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 589999999999999999999999999964
No 342
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.21 E-value=0.00078 Score=44.72 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=29.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
++|+|||+|..|...|..|++.|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 46899999999999999999999999999885
No 343
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.19 E-value=0.00071 Score=44.57 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=29.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..+++.|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 58899999999999999999999999999865
No 344
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.19 E-value=0.00077 Score=45.95 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|+|||+|.+|+.++..+...|.+|++++++.
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 58999999999999999999999999999853
No 345
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.17 E-value=0.00071 Score=47.84 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=29.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999999999999998754
No 346
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.15 E-value=0.0011 Score=44.22 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|+|||+|..|.+.|..|++.|++|+++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 58999999999999999999999999998754
No 347
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.15 E-value=0.00095 Score=46.06 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|+|+|.|+.|+.+|..+...|.+|+++|.++
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 58999999999999999999999999999865
No 348
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.14 E-value=0.0011 Score=44.07 Aligned_cols=33 Identities=33% Similarity=0.662 Sum_probs=29.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~ 33 (130)
++|.|||+|..|.++|+.|+..| .+++++|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 46899999999999999999998 4899999865
No 349
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.14 E-value=0.0012 Score=41.36 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.|+|||+|-.|...+..|.+.|.+|+|+++.
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5899999999999999999999999999864
No 350
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.11 E-value=0.0014 Score=39.69 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|+|+|+|.+|+.|+..|...|.+++++|...
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 58999999999999999999999999998753
No 351
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.09 E-value=0.0011 Score=43.57 Aligned_cols=32 Identities=44% Similarity=0.579 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||+|..|.+.|..+++.|++|+++|+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 58999999999999999999999999999654
No 352
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.07 E-value=0.0014 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|.+|+-.|..+++.|.+|+++++.+.+
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 5899999999999999999999999999986654
No 353
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.05 E-value=0.0016 Score=40.61 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||+|..|..+|..|++.|. +++++|.+
T Consensus 23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 58999999999999999999999 69999886
No 354
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.05 E-value=0.0017 Score=45.59 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=31.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg 37 (130)
+++|||+|..|+-.|..|++.|.+|+++++.+.+..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~ 214 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP 214 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC
Confidence 589999999999999999999999999998665543
No 355
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.03 E-value=0.0017 Score=36.63 Aligned_cols=31 Identities=35% Similarity=0.541 Sum_probs=27.8
Q ss_pred EEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
|+|+|.|..|...+..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999887999999875
No 356
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.03 E-value=0.0017 Score=45.27 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=31.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 58999999999999999999999999999876543
No 357
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.02 E-value=0.0013 Score=49.09 Aligned_cols=34 Identities=41% Similarity=0.660 Sum_probs=31.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-+|..|.+.|.+|+|+|+.+.+
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 5899999999999999999999999999986654
No 358
>PRK04148 hypothetical protein; Provisional
Probab=97.02 E-value=0.00098 Score=38.81 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=28.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.+++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 48999999 999999999999999999998765
No 359
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.02 E-value=0.0016 Score=45.27 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=30.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|.+|+-+|..+.+.|.+|+++++.+.+
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 5899999999999999999999999999986643
No 360
>PTZ00058 glutathione reductase; Provisional
Probab=97.00 E-value=0.0016 Score=46.86 Aligned_cols=34 Identities=15% Similarity=0.435 Sum_probs=31.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-.|..+++.|.+|+++|+.+.+
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 5899999999999999999999999999987654
No 361
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.99 E-value=0.0018 Score=43.38 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=30.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
++|.|||+|.-|.+.|..|++.|++|.++.|+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 368999999999999999999999999999853
No 362
>PRK06116 glutathione reductase; Validated
Probab=96.99 E-value=0.0018 Score=45.19 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=30.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 5899999999999999999999999999986543
No 363
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.98 E-value=0.0016 Score=46.38 Aligned_cols=34 Identities=47% Similarity=0.572 Sum_probs=30.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+|+|||+|..|+-+|..|+..+.+|+++|+.+.+
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 6899999999999999999999999999976544
No 364
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.98 E-value=0.0017 Score=47.44 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=31.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 58999999999999999999999999999876654
No 365
>PRK14694 putative mercuric reductase; Provisional
Probab=96.96 E-value=0.0021 Score=45.12 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+++|||+|..|+-.|..|++.|.+|+++++..
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 58999999999999999999999999998743
No 366
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.96 E-value=0.0016 Score=48.90 Aligned_cols=34 Identities=38% Similarity=0.528 Sum_probs=31.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.++|||+|..|+-+|..|.+.|.+|+|+|+.+.+
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4799999999999999999999999999987653
No 367
>PLN02507 glutathione reductase
Probab=96.96 E-value=0.0019 Score=45.79 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=30.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-.|..+++.|.+|+++++.+.+
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 5899999999999999999999999999986643
No 368
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.96 E-value=0.0018 Score=43.51 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 68999999999999999999999999999854
No 369
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.96 E-value=0.00026 Score=48.04 Aligned_cols=41 Identities=27% Similarity=0.486 Sum_probs=34.5
Q ss_pred EEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeec
Q 037740 3 VAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTIT 43 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~ 43 (130)
+-|||+|+|||++|..|.+. |.+++++|.-+..||..-...
T Consensus 25 aY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~ 69 (587)
T COG4716 25 AYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAG 69 (587)
T ss_pred eEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCC
Confidence 56999999999999999986 669999999888888554433
No 370
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.95 E-value=0.0015 Score=45.22 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=30.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
++|.|||.|..|+..|..|++.|++|+++++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 3689999999999999999999999999998643
No 371
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.94 E-value=0.0019 Score=42.99 Aligned_cols=32 Identities=34% Similarity=0.590 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 58899999999999999999999999999754
No 372
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.94 E-value=0.0019 Score=38.81 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=26.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.++|+|-|..|..+|..|...|.+|+|.|.+|.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 478999999999999999999999999999763
No 373
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.93 E-value=0.0016 Score=45.08 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||.|..|++.|..|++.|++|+++|+++
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 58999999999999999999999999999764
No 374
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.92 E-value=0.0017 Score=38.05 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.5
Q ss_pred EEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
++|+|+|..+.+.+..+...|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 57999999999999999999999999997643
No 375
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.0019 Score=44.08 Aligned_cols=33 Identities=36% Similarity=0.623 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+++.|||+|-.||+.|.-|++.|++|+++|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 478999999999999999999999999998754
No 376
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.90 E-value=0.0021 Score=44.95 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|+|||+|..|+-+|..+.+.|.+|+++++.+
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 58999999999999999999999999998754
No 377
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.90 E-value=0.002 Score=43.18 Aligned_cols=32 Identities=41% Similarity=0.575 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58999999999999999999999999999854
No 378
>PRK13748 putative mercuric reductase; Provisional
Probab=96.89 E-value=0.0023 Score=45.90 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+++|||+|..|+-.|..|++.|.+|+++++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 58999999999999999999999999999853
No 379
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.89 E-value=0.0027 Score=37.00 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=29.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|+|+|+|..|...|..|++.|. +++++|.+.
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 68999999999999999999998 699999743
No 380
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.89 E-value=0.0025 Score=42.36 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=29.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||+|.-|.+.|..|.+.|++|.+++++.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 68899999999999999999999999999864
No 381
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.88 E-value=0.0022 Score=42.80 Aligned_cols=32 Identities=44% Similarity=0.714 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||+|..|...|..|++.|++|.++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 68999999999999999999999999999863
No 382
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.88 E-value=0.002 Score=42.51 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..+++.|++|+++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48899999999999999999999999999764
No 383
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.87 E-value=0.0025 Score=43.01 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=29.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|+|||+|..|..+|..|++.|. +++++|++.
T Consensus 26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 58999999999999999999998 789999853
No 384
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.86 E-value=0.0024 Score=43.99 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|+|+|.|..|..+|..+...|.+|+++|.++
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 58999999999999999999999999998765
No 385
>PLN02546 glutathione reductase
Probab=96.85 E-value=0.0025 Score=45.78 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=31.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 5899999999999999999999999999987654
No 386
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.85 E-value=0.0027 Score=45.01 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=29.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 5899999999999999999999999999874
No 387
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.85 E-value=0.0023 Score=41.99 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
++|.|||.|..|.+.|..|.+.|++|.++++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 368999999999999999999999999999864
No 388
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.84 E-value=0.0023 Score=46.00 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=30.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999999999999998664
No 389
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.84 E-value=0.0024 Score=45.48 Aligned_cols=34 Identities=44% Similarity=0.518 Sum_probs=30.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+|+|||+|..|+-+|..|+..+.+|+++++.+.+
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 6899999999999999999999999999986544
No 390
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.83 E-value=0.0027 Score=41.83 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
+++|||+|-+|.++++.|.+.|. +++|++|+.
T Consensus 129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 58999999999999999999997 799998863
No 391
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.83 E-value=0.0035 Score=38.09 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=28.0
Q ss_pred cEEEEccCH-HHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGI-SGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
+++|||+|- .|..+|..|.+.|.+|++..+.
T Consensus 46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 689999996 6999999999999999999875
No 392
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0028 Score=43.36 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=29.8
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~ 32 (130)
.+++|||+|-.|.++|..|++.+ .+|++.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 37899999999999999999998 899999986
No 393
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.82 E-value=0.0023 Score=44.07 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=40.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-------------CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHH
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-------------VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFF 68 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-------------~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 68 (130)
+++|+|||++|.=.|.+|+..- .+|+++|+.+.+.- .+.........+.+
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-----------------~~~~~l~~~a~~~L 219 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-----------------MFPPKLSKYAERAL 219 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-----------------CCCHHHHHHHHHHH
Confidence 5899999999999999988751 27888888766533 01111123445688
Q ss_pred HHcCCCceec
Q 037740 69 DSLGVDMKSS 78 (130)
Q Consensus 69 ~~~g~~~~~~ 78 (130)
+++|++....
T Consensus 220 ~~~GV~v~l~ 229 (405)
T COG1252 220 EKLGVEVLLG 229 (405)
T ss_pred HHCCCEEEcC
Confidence 8888877653
No 394
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.81 E-value=0.0026 Score=44.93 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 5899999999999999999999999999974
No 395
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.81 E-value=0.0029 Score=38.12 Aligned_cols=32 Identities=41% Similarity=0.567 Sum_probs=27.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.+||-|.-|...|..|.++|++|.++++++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 58899999999999999999999999999864
No 396
>PRK10262 thioredoxin reductase; Provisional
Probab=96.80 E-value=0.003 Score=42.11 Aligned_cols=34 Identities=35% Similarity=0.604 Sum_probs=30.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
+++|||+|..|+-.|..|++.+.+|+++++.+..
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 5899999999999999999999999999986543
No 397
>PRK12831 putative oxidoreductase; Provisional
Probab=96.79 E-value=0.0027 Score=44.60 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=29.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 58999999999999999999999999998743
No 398
>PRK14727 putative mercuric reductase; Provisional
Probab=96.78 E-value=0.0036 Score=44.19 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=29.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
+++|||+|..|+-.|..+.+.|.+|+++++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5899999999999999999999999999874
No 399
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.77 E-value=0.0032 Score=44.53 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.3
Q ss_pred cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG 36 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g 36 (130)
+++|||+|..|+-.|..+... |.+|+++|+.+.+.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 589999999999999876654 89999999876643
No 400
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.77 E-value=0.0035 Score=42.34 Aligned_cols=31 Identities=39% Similarity=0.677 Sum_probs=29.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||+|..|..+|..|++.|. +++++|.+
T Consensus 26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 68999999999999999999999 89999985
No 401
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.76 E-value=0.0032 Score=41.69 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.++|||.|.+|..++..|.+.|.+|+++++++
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 402
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.73 E-value=0.003 Score=44.79 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=29.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.++|+|+|..|+.++..+...|.+|+++|+++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999999999999998754
No 403
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.72 E-value=0.003 Score=44.79 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58899999999999999999999999999864
No 404
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.72 E-value=0.0035 Score=42.40 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=28.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~ 33 (130)
.++|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 489999999999999999999987 99998754
No 405
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.72 E-value=0.0044 Score=38.70 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.++|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 58999999999999999999999999998754
No 406
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.0035 Score=43.72 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=29.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.++|+|+|.+|+++|..|++.|.+|++.|++.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 47899999999999999999999999998653
No 407
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.69 E-value=0.002 Score=42.94 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=28.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-C-CcEEEEecCCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-G-VDVVLYEKEDS 34 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-g-~~v~v~E~~~~ 34 (130)
+.|+|+|||.+|++.|..+.++ + -+|.|+|+...
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4689999999999999999987 4 37899987543
No 408
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0021 Score=42.58 Aligned_cols=70 Identities=30% Similarity=0.539 Sum_probs=50.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC--------CCCCCCeeeecc---------cCcccccccccccCCCChhH
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE--------DSLGGHAKTITI---------DGVDLDLGFTLFNHATSPNT 64 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~--------~~~gg~~~~~~~---------~~~~~~~g~~~~~~~~~~~~ 64 (130)
+|+|||+|.+|.-+|..+.-.|.+|+++|.+ +..+++..+... ....+-+|+.....+..+..
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkL 249 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKL 249 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCcee
Confidence 6899999999999999999999999999987 234566554444 12345567777777655544
Q ss_pred H--HHHHHc
Q 037740 65 M--EFFDSL 71 (130)
Q Consensus 65 ~--~~~~~~ 71 (130)
+ ++++.+
T Consensus 250 vt~e~vk~M 258 (371)
T COG0686 250 VTREMVKQM 258 (371)
T ss_pred hhHHHHHhc
Confidence 4 445554
No 409
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.68 E-value=0.0065 Score=35.79 Aligned_cols=33 Identities=39% Similarity=0.713 Sum_probs=29.0
Q ss_pred CcEEEEcc-CHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740 1 MQVAVIGG-GISGLASAFVLAKAGV--DVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~-G~~Gl~~a~~l~~~g~--~v~v~E~~~ 33 (130)
.+|.|||+ |..|.+.|+.|...++ +++++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 36899999 9999999999999865 799999863
No 410
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.68 E-value=0.0055 Score=37.42 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=28.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|+|||+|..|...|..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599998753
No 411
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.0038 Score=43.83 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999754
No 412
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.67 E-value=0.0041 Score=41.04 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=30.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.++|||.|..|.+.|..|...|.+|++++|++.
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 589999999999999999999999999998653
No 413
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.63 E-value=0.0046 Score=40.51 Aligned_cols=33 Identities=36% Similarity=0.601 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 589999999999999999999999999998543
No 414
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.63 E-value=0.0037 Score=44.42 Aligned_cols=32 Identities=47% Similarity=0.614 Sum_probs=29.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..+++.|++|+++|+++
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58899999999999999999999999999864
No 415
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.63 E-value=0.0053 Score=38.83 Aligned_cols=33 Identities=36% Similarity=0.554 Sum_probs=29.5
Q ss_pred CcEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIG-GGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
++|.||| +|.-|.+.|..|.+.|++|.++.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 3689997 79999999999999999999998764
No 416
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.63 E-value=0.005 Score=40.96 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=29.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~ 34 (130)
.|.|||+|..|.++|+.|+..| .+++++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999998 47999998543
No 417
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.63 E-value=0.0062 Score=35.81 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=28.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|+|||.|..|...|..|++.|. +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 699998753
No 418
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.61 E-value=0.0042 Score=43.36 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=30.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
++++|+|+|..|...|..|.+.|.+|+++|+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 468999999999999999999999999999854
No 419
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.61 E-value=0.0053 Score=42.90 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.++|+|.|.+|+++|..|.+.|++|+++|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 589999999999999999999999999987543
No 420
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.61 E-value=0.0041 Score=42.14 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|+|+|+|+.||.++..+...|. +|+++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 38999999999999888888886 566667754
No 421
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.61 E-value=0.0058 Score=40.63 Aligned_cols=32 Identities=34% Similarity=0.600 Sum_probs=28.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
+|.|||+|..|...|..++..|. +++++|.+.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 68999999999999999999875 899999754
No 422
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.60 E-value=0.0041 Score=44.01 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=28.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899999999999999999999999999964
No 423
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.59 E-value=0.0048 Score=42.86 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|+|+|.|..|..+|..|...|.+|+++|+++
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 48999999999999999999999999999865
No 424
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.59 E-value=0.0063 Score=39.12 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=27.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
+|+|+|.|..|..+|..|++.|. +++++|.+
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 68999999999999999999987 67888874
No 425
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.59 E-value=0.0053 Score=39.10 Aligned_cols=31 Identities=29% Similarity=0.573 Sum_probs=28.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCc---EEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVD---VVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~---v~v~E~~ 32 (130)
.++|+|+|.+|..+|..|.+.|.+ +.+++|+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 589999999999999999999975 9999986
No 426
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.59 E-value=0.0064 Score=40.49 Aligned_cols=32 Identities=38% Similarity=0.684 Sum_probs=28.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|.|||+|..|...|+.++..|. +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 58999999999999999999876 899999743
No 427
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.58 E-value=0.0065 Score=40.74 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~ 34 (130)
.|.|||+|..|...|+.++..|+ +++++|.++.
T Consensus 8 KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 8 KISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 58999999999999999999996 8999997654
No 428
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.58 E-value=0.0061 Score=38.13 Aligned_cols=31 Identities=39% Similarity=0.631 Sum_probs=28.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||.|..|..+|..|++.|. +++++|.+
T Consensus 23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 58999999999999999999998 89999875
No 429
>PRK08328 hypothetical protein; Provisional
Probab=96.56 E-value=0.0067 Score=38.75 Aligned_cols=31 Identities=42% Similarity=0.637 Sum_probs=27.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||+|..|..+|..|++.|. +++++|.+
T Consensus 29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 58999999999999999999998 68888764
No 430
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.55 E-value=0.0069 Score=39.56 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|+|+|.|..|..+|..|++.|. +++++|.+.
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 58999999999999999999995 899999754
No 431
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.55 E-value=0.0045 Score=40.78 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=29.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||.|..|...|..|.+.|++|+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 47899999999999999999999999999864
No 432
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.55 E-value=0.0065 Score=39.17 Aligned_cols=31 Identities=39% Similarity=0.470 Sum_probs=27.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
+|+|||.|..|..+|..|++.|. +++++|.+
T Consensus 34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 68999999999999999999997 78888764
No 433
>PLN02494 adenosylhomocysteinase
Probab=96.53 E-value=0.006 Score=42.83 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.++|+|.|..|..+|..+...|.+|+++|+++.
T Consensus 256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 589999999999999999999999999998653
No 434
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.53 E-value=0.0042 Score=46.01 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=30.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.|.|||+|.-|...|+.++..|++|+++|.++.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 478999999999999999999999999998653
No 435
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0035 Score=41.30 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=25.2
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-------CcEEEEec
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-------VDVVLYEK 31 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-------~~v~v~E~ 31 (130)
.+|+|||+|..||++|..+.+.. .+|+|++-
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 47999999999999998777743 57888853
No 436
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.52 E-value=0.0048 Score=43.92 Aligned_cols=33 Identities=45% Similarity=0.622 Sum_probs=30.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.|.|||+|.-|...|..+++.|++|+++|+++.
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 478999999999999999999999999998653
No 437
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.51 E-value=0.005 Score=44.31 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+++|+|.|..|...|..|.+.|.+++++|+++.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 479999999999999999999999999999764
No 438
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.51 E-value=0.0071 Score=39.94 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~ 33 (130)
.++|+|+|-+|.++|..|++.|.+ |+|+.|+.
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 478999999999999999999996 99998853
No 439
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.48 E-value=0.0056 Score=40.80 Aligned_cols=33 Identities=36% Similarity=0.521 Sum_probs=29.0
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
..|.|+|+|..|...|+.|++.|.+|+++-|++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 368999999999999999999998888886654
No 440
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.45 E-value=0.0094 Score=37.61 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=28.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCc-EEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~ 32 (130)
.|+|||+|..|..+|..|++.|.. ++++|.+
T Consensus 30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999984 8899875
No 441
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.44 E-value=0.0032 Score=40.83 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=27.3
Q ss_pred EEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740 3 VAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL 35 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~ 35 (130)
.+|+|||+||.+||-.|+.. ..+++++...+.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 58999999999999999986 5688888765543
No 442
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.43 E-value=0.0072 Score=42.41 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
+|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 58999999999999999999988 899998743
No 443
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.43 E-value=0.0051 Score=42.73 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=28.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHC-----CCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA-----GVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~-----g~~v~v~E~~~ 33 (130)
+|++|||+|++|+-+|+.++.. .+.+.++|+..
T Consensus 19 ~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~ 56 (486)
T COG2509 19 LDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL 56 (486)
T ss_pred cceEEECCCchHHHHHHHHhhhcccCCceEEEEEEecc
Confidence 6899999999999999999964 57889998743
No 444
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.42 E-value=0.0053 Score=45.45 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|+.++..|++|+++|.++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48899999999999999999999999999764
No 445
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.42 E-value=0.0082 Score=38.75 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.++|+|+|..+...|..+...|++|+|+|.++.
T Consensus 102 ~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 102 HVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred EEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 579999999999999999999999999986543
No 446
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.42 E-value=0.0066 Score=40.26 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=28.0
Q ss_pred EEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 3 VAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
|.|||+|..|...|..++..++ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998876 999999865
No 447
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.42 E-value=0.0062 Score=41.92 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=27.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||.|-.|+..|..++. |++|+++|+++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 68899999999999988775 99999999764
No 448
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.41 E-value=0.0068 Score=42.78 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=28.7
Q ss_pred CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~ 33 (130)
++|.|||.|-.|+..|..|++. |++|+.+|.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 4689999999999999999998 47899998653
No 449
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.39 E-value=0.018 Score=39.63 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.6
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~ 33 (130)
+|++.||-||+-|+.|+.|...+ .+++.+||.+
T Consensus 6 ~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 6 LDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred eeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 59999999999999999999874 7899999865
No 450
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.36 E-value=0.01 Score=37.84 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=27.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||.|..|...|..|++.|. +++++|.+
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 68999999999999999999998 67888764
No 451
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.36 E-value=0.0087 Score=41.60 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=28.9
Q ss_pred cEEEEccCHHHHHHHHHHHH--------------CCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAK--------------AGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~--------------~g~~v~v~E~~~~~ 35 (130)
+++|||+|++|+-.|..|+. .+.+|+++|+.+.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 58999999999999999876 36889999986554
No 452
>PRK08223 hypothetical protein; Validated
Probab=96.33 E-value=0.01 Score=39.15 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=28.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||.|-.|..+|..|++.|. +++++|.+
T Consensus 29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 68999999999999999999998 67888864
No 453
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.32 E-value=0.011 Score=39.66 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=28.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~ 33 (130)
+|.|||+|..|.+.|+.++..| .+++++|.+.
T Consensus 7 KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 7 KISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 6899999999999999999988 5888999754
No 454
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.31 E-value=0.0081 Score=42.40 Aligned_cols=31 Identities=39% Similarity=0.613 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.|+|+|.|.+|+++|..|.+.|.+|++.|++
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4899999999999999999999999999974
No 455
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.0086 Score=41.56 Aligned_cols=32 Identities=38% Similarity=0.475 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||-|.+|+++|..|.+.|.+|++.|++.
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999999999999754
No 456
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.29 E-value=0.0087 Score=44.63 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~ 33 (130)
+|+|||+|.+|+-+|..+.+.|.+ |+++++.+
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999987 99998754
No 457
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.009 Score=41.80 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=28.6
Q ss_pred EEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
++|+|-|.+|+++|..|.+.|++|.+.|...
T Consensus 9 ~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 9 HIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred EEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 7899999999999999999999999999643
No 458
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.29 E-value=0.0079 Score=42.03 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=30.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.|+|+|-|.+|+++|..|.+.|.+|++.|..+..
T Consensus 9 kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred EEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 5899999999999999999999999999965544
No 459
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.28 E-value=0.011 Score=36.56 Aligned_cols=31 Identities=39% Similarity=0.669 Sum_probs=28.1
Q ss_pred cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.++|+|+ |..|..++..|.+.|.+|+++.|+
T Consensus 30 ~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4889996 999999999999999999999875
No 460
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.0084 Score=42.27 Aligned_cols=31 Identities=26% Similarity=0.048 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.|+|+|.|.+|.++|..|.+.|.+|++.|.+
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 5899999999999999999999999999954
No 461
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.27 E-value=0.011 Score=38.67 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=28.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.++|+|+|.+|.+.+..|.+.|.+|.+++|+.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999999999999999999999998753
No 462
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.27 E-value=0.011 Score=37.50 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=27.9
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK 31 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~ 31 (130)
.|+|||||..++.-+..|.+.|.+|+|+-+
T Consensus 27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 589999999999999999999999999954
No 463
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.27 E-value=0.0091 Score=41.72 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=30.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+++|+|+|..|...+..|.+.|.+|+++|+++.
T Consensus 233 ~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 233 RVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 489999999999999999999999999998753
No 464
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.26 E-value=0.015 Score=35.56 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
.|.|||.|-.|...|..|...|.+|..+++...
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 588999999999999999999999999998654
No 465
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.25 E-value=0.011 Score=38.79 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=28.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.++|+|+|-++.++++.|.+.|. ++.|+.|+.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 48999999999999999999987 599998864
No 466
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.23 E-value=0.0073 Score=44.90 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|+.++..|++|+++|.++
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 48899999999999999999999999999764
No 467
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.23 E-value=0.0087 Score=39.80 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=28.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~ 33 (130)
+|.|||.|..|.+.|..|.+.|. +|.++++++
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 58899999999999999999985 899998864
No 468
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.22 E-value=0.012 Score=37.91 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=27.4
Q ss_pred CcEEEEccCHHHHHHHHHHHHCC-----------CcEEEEecC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAG-----------VDVVLYEKE 32 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g-----------~~v~v~E~~ 32 (130)
.+|+|||+|-.|..++..|++.| .+++++|.+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 36899999999999999999963 388999874
No 469
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.22 E-value=0.014 Score=37.43 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.|+|||+|..|...+..|+..|. +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 688888753
No 470
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.22 E-value=0.016 Score=30.98 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=27.1
Q ss_pred cEEEEccCHHHHHHHHHHHHC-CCcEEEEec
Q 037740 2 QVAVIGGGISGLASAFVLAKA-GVDVVLYEK 31 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~ 31 (130)
+++|+|.|..|..++..+.+. +.++.++++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 578999999999999999998 678889987
No 471
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.20 E-value=0.014 Score=39.07 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~ 33 (130)
+|.|||+|-.|.++|+.|...+. +++++|.+.
T Consensus 8 ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 8 KVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999999999999999999887 799999754
No 472
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.18 E-value=0.013 Score=38.60 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=28.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.++|+|+|-++.++++.|.+.|. ++.|+.|+.
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 47999999999999999999987 688998753
No 473
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.17 E-value=0.011 Score=39.04 Aligned_cols=32 Identities=38% Similarity=0.570 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||.|..|...|..+.+.|++|.++++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58899999999999999999999999999864
No 474
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.17 E-value=0.011 Score=39.19 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=30.3
Q ss_pred CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.+|.|||.|.-|.+.|..|.+.|++|.++++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 368999999999999999999999999999864
No 475
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.17 E-value=0.015 Score=38.82 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=28.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~ 33 (130)
+|.|||+|-.|.++|+.|...+. +++++|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 48999999999999999998876 699999754
No 476
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.16 E-value=0.013 Score=41.23 Aligned_cols=32 Identities=34% Similarity=0.333 Sum_probs=29.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.++|||.|..|..+|..|...|.+|+++|+++
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999999999998764
No 477
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.15 E-value=0.014 Score=38.49 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=28.5
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~ 33 (130)
.++|||+|-++.++++.|.+.|. +++|+.|+.
T Consensus 127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 48999999999999999999997 699998853
No 478
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.14 E-value=0.012 Score=39.07 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=29.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
+|.|||.|.-|.+.|..|.+.|++|+++++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68899999999999999999999999999864
No 479
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.14 E-value=0.011 Score=42.00 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=29.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|+|.|.+|+++|..|.+.|++|.+.|...
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 48899999999999999999999999999643
No 480
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.11 E-value=0.015 Score=38.26 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~ 33 (130)
.++|+|+|-+|.+++..|...| .+|+|+.|+.
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4789999999999999999999 6899998853
No 481
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.10 E-value=0.0096 Score=44.13 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=29.2
Q ss_pred cEEEEccCHHHHHHHHHHH-HCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLA-KAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~-~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..++ ..|+.|+++|.++
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 4889999999999999999 8899999999854
No 482
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.09 E-value=0.01 Score=43.86 Aligned_cols=32 Identities=38% Similarity=0.574 Sum_probs=29.0
Q ss_pred cEEEEccCHHHHHHHHHHH-HCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLA-KAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~-~~g~~v~v~E~~~ 33 (130)
.|.|||+|.-|...|..++ +.|++|+++|.++
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4889999999999999998 5899999999865
No 483
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.09 E-value=0.017 Score=38.70 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=28.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~ 33 (130)
+|.|||+|-.|.++|+.|...+. +++++|.+.
T Consensus 5 Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 5 KVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 68999999999999999998876 689998754
No 484
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.08 E-value=0.011 Score=43.14 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=30.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+|+|+|.|..|...|..|.+.|.+++++|+++.
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 589999999999999999999999999998764
No 485
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.06 E-value=0.013 Score=41.95 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=28.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.++|+|+|.+|.++++.|++.|.+|.++.|+
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3789999999999999999999999999874
No 486
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.04 E-value=0.0092 Score=37.97 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=30.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~ 35 (130)
.|.|||+|.-|.-.|...+..|+.|.+++++...
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred ceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 4889999999999999999999999999987543
No 487
>PRK06153 hypothetical protein; Provisional
Probab=96.01 E-value=0.013 Score=40.21 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=28.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||.|-.|..++..|++.|. +++++|.+
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 58999999999999999999987 78888865
No 488
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.01 E-value=0.018 Score=39.20 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=28.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||.|..|..+|..|++.|. +++++|.+
T Consensus 30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998 68888875
No 489
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.01 E-value=0.018 Score=36.80 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=28.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|+|.|..|..+|..|++.|. +++++|.+
T Consensus 13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 58999999999999999999998 78898874
No 490
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.00 E-value=0.013 Score=42.60 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=30.7
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~ 34 (130)
+|+|+|.|..|...|..|.+.|.+++++|+|+.
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDIS 434 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence 589999999999999999999999999998764
No 491
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.00 E-value=0.018 Score=38.26 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
+|+|||+|..|...|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999998 67888764
No 492
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.00 E-value=0.012 Score=41.37 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=28.8
Q ss_pred cEEEEccCHHHHH-HHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLA-SAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~-~a~~l~~~g~~v~v~E~~~ 33 (130)
.+.|||.|-+|++ +|..|.+.|++|.+.|...
T Consensus 9 ~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 9 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred EEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 4799999999999 6999999999999999754
No 493
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.98 E-value=0.019 Score=38.73 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=29.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.|||.|..|.+.|..|...|.+|.++++++
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~ 179 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 47899999999999999999999999999754
No 494
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.97 E-value=0.018 Score=39.39 Aligned_cols=31 Identities=39% Similarity=0.556 Sum_probs=28.4
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||+|..|..+|..|++.|. +++++|.+
T Consensus 43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 58999999999999999999997 78898875
No 495
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.96 E-value=0.023 Score=35.47 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=28.3
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||.|..|..+|..|+..|. +++++|.+
T Consensus 21 ~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 21 KVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 58999999999999999999998 58899875
No 496
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.95 E-value=0.018 Score=39.05 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=28.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCC--------CcEEEEec
Q 037740 2 QVAVIGGGISGLASAFVLAKAG--------VDVVLYEK 31 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g--------~~v~v~E~ 31 (130)
+|.|||+|.-|.+.|..|++++ ++|.++.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 5889999999999999999999 89999977
No 497
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.94 E-value=0.014 Score=41.01 Aligned_cols=31 Identities=42% Similarity=0.620 Sum_probs=28.6
Q ss_pred cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~ 32 (130)
.|.|||.|-+|+++|..|.+.|++|.+.|..
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 4789999999999999999999999999864
No 498
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.94 E-value=0.026 Score=35.23 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=28.2
Q ss_pred cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE 32 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~ 32 (130)
.|+|||.|..|...|..|+..|. +++++|.+
T Consensus 23 ~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 23 RILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 58999999999999999999998 58899874
No 499
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.93 E-value=0.02 Score=33.98 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=28.1
Q ss_pred cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740 2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~ 33 (130)
.++|||+|..|.+.+..|.+.| .++.+++++.
T Consensus 21 ~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 21 KVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4789999999999999999985 7899998754
No 500
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.92 E-value=0.016 Score=39.77 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=29.3
Q ss_pred cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740 2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED 33 (130)
Q Consensus 2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~ 33 (130)
.|.||| .|.-|.+.|..|.++|++|.++++++
T Consensus 100 ~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 100 PVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred eEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 488999 89999999999999999999999853
Done!