BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037741
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 165 MGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT------ 217
+ WL DE I+ Y+ ++ E+ ++ L V +TFF+ L + VK T
Sbjct: 45 LNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVF 101
Query: 218 DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEY 277
VD+LL+P++L G HW LA VDFRK + YDS+ ++ + +++ ++L+
Sbjct: 102 SVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNE--------ACRILL-QYLKQ 151
Query: 278 VGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEY 337
R E + W++ + KS Q+ DCG+F + F H+ Y
Sbjct: 152 ESIDKKRKEFDTN-GWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPY 210
Query: 338 FRKKITVDIFNDDII 352
FRK++ +I + ++
Sbjct: 211 FRKRMVWEILHRKLL 225
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 24/197 (12%)
Query: 165 MGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT------ 217
+ WL DE I+ Y+ ++ E+ ++ L V +TFF+ L + VK T
Sbjct: 57 LNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVF 113
Query: 218 DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEY 277
VD+LL+P++L G HW LA VDFRK + YDS+ ++ I ++L+
Sbjct: 114 SVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQ 163
Query: 278 VGFYNIRPELRSEYPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHV 335
R E + W++ + KS PQQ G+ DCG+F + F H+
Sbjct: 164 ESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHM 221
Query: 336 EYFRKKITVDIFNDDII 352
YFRK++ +I + ++
Sbjct: 222 PYFRKRMVWEILHRKLL 238
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 165 MGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT------ 217
+ WL DE I+ Y+ ++ E+ ++ L V +TFF+ L + VK T
Sbjct: 49 LNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVF 105
Query: 218 DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEY 277
VD+LL+P++L G HW LA VDFRK + YDS+ ++ + +++ ++L+
Sbjct: 106 SVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNE--------ACRILL-QYLKQ 155
Query: 278 VGFYNIRPELRSEYPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHV 335
R E + W++ + KS PQQ G+ DCG+F + F H+
Sbjct: 156 ESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHM 213
Query: 336 EYFRKKITVDIFNDDII 352
YFRK++ +I + ++
Sbjct: 214 PYFRKRMVWEILHRKLL 230
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 165 MGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT------ 217
+ WL DE I+ Y+ ++ E+ ++ L V +TFF+ L + VK T
Sbjct: 45 LNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVF 101
Query: 218 DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEY 277
VD+LL+P++L G HW LA VDFRK + YDS+ ++ + +++ ++L+
Sbjct: 102 SVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNE--------ACRILL-QYLKQ 151
Query: 278 VGFYNIRPELRSEYPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHV 335
R E + W++ + KS PQQ G+ DCG+F + F H+
Sbjct: 152 ESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHM 209
Query: 336 EYFRKKITVDIFNDDII 352
YFRK++ +I + ++
Sbjct: 210 PYFRKRMVWEILHRKLL 226
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 24/197 (12%)
Query: 165 MGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT------ 217
+ WL DE I+ Y+ ++ E+ ++ L V +TFF+ L + VK T
Sbjct: 45 LNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVF 101
Query: 218 DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEY 277
VD+LL+P++L G HW LA VDFRK + YDS+ ++ + +++ ++L+
Sbjct: 102 SVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNE--------ACRILL-QYLKQ 151
Query: 278 VGFYNIRPELRSEYPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHV 335
R E + W++ + KS PQQ G+ D G+F + F H+
Sbjct: 152 ESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DAGMFACKYADCITKDRPINFTQQHM 209
Query: 336 EYFRKKITVDIFNDDII 352
YFRK++ +I + ++
Sbjct: 210 PYFRKRMVWEILHRKLL 226
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 165 MGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT------ 217
+ WL DE I+ Y+ ++ E+ ++ L V +TFF+ L + VK T
Sbjct: 24 LNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVF 80
Query: 218 DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEY 277
VD+LL+P++L G HW LA VDFRK + YDS+ ++ I ++L+
Sbjct: 81 SVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQ 130
Query: 278 VGFYNIRPELRSEYPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHV 335
R E + W++ + KS PQQ G+ D G+F + F H+
Sbjct: 131 ESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DSGMFACKYADCITKDRPINFTQQHM 188
Query: 336 EYFRKKITVDIFNDDII 352
YFRK++ +I + ++
Sbjct: 189 PYFRKRMVWEILHRKLL 205
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 32/193 (16%)
Query: 167 WLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSL----------WVTAHNVKIM 216
WL D I +++ I ++ PN + ++FF+ +L W+ +I
Sbjct: 48 WLNDTIIEFFMKYI---EKSTPNTVA-----FNSFFYTNLSERGYQGVRRWMKRKKTQI- 98
Query: 217 TDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLE 276
+D + P+NL+ SHW L +D +K + DSL + + + K +
Sbjct: 99 DKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKH 158
Query: 277 YVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVE 336
+G + +I + PQQ P DCG++V M T+Y +F+
Sbjct: 159 TIG-----------EDFDLIHL-DCPQQ-PNGYDCGIYVCMNTLYGSADAPLDFDYKDAI 205
Query: 337 YFRKKITVDIFND 349
R+ I I D
Sbjct: 206 RMRRFIAHLILTD 218
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 167 WLGDEHIHEYLRLISE--KQQQYPNALLQHVTHTDTFFWLSL----------WVTAHNVK 214
WL DE I+ Y+ L+ E K+Q YP AL HV TFF+ L W N
Sbjct: 47 WLNDEVINFYMNLLVERNKKQGYP-AL--HVF--STFFYPKLKSGGYQAVKRWTKGVN-- 99
Query: 215 IMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDS-----------LLTFCDDKRYKLK 263
+ + +++L+P++ HW L +D RK + DS LL + D+ +
Sbjct: 100 -LFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKR 157
Query: 264 FKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLM 323
L ++ W + +++P PQQ G+ DCG+F Y+
Sbjct: 158 NSDLNLL--EWTHH----SMKPH-------------EIPQQLNGS-DCGMFTCKYADYIS 197
Query: 324 FGLRFEFNASHVEYFRKKITVDIFNDDII 352
F + FRKK+ +I + ++
Sbjct: 198 RDKPITFTQHQMPLFRKKMVWEILHQQLL 226
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 32/193 (16%)
Query: 167 WLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSL----------WVTAHNVKIM 216
WL D I +++ I ++ PN + ++FF+ +L W+ +I
Sbjct: 48 WLNDTIIEFFMKYI---EKSTPNTVA-----FNSFFYTNLSERGYQGVRRWMKRKKTQI- 98
Query: 217 TDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLE 276
+D + P+NL+ SHW L +D +K + DSL + + + K +
Sbjct: 99 DKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKH 158
Query: 277 YVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVE 336
+G + +I + PQQ P D G++V M T+Y +F+
Sbjct: 159 TIG-----------EDFDLIHL-DCPQQ-PNGYDXGIYVCMNTLYGSADAPLDFDYKDAI 205
Query: 337 YFRKKITVDIFND 349
R+ I I D
Sbjct: 206 RMRRFIAHLILTD 218
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 52/209 (24%)
Query: 167 WLGDEHIHEYLRLISE--KQQQYPNALLQHVTHTDTFFWLSL----------WVTAHNVK 214
WL DE I+ Y+ L+ E K+Q YP AL HV TFF+ L W N
Sbjct: 53 WLNDEVINFYMNLLVERNKKQGYP-AL--HV--FSTFFYPKLKSGGYQAVKRWTKGVN-- 105
Query: 215 IMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDS-----------LLTFCDDKRYKLK 263
+ + +++L+P++ HW L +D RK + DS LL + D+ +
Sbjct: 106 -LFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKR 163
Query: 264 FKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLM 323
L ++ W ++++P PQQ G+ D G+F Y+
Sbjct: 164 NSDLNLL--EWTH----HSMKPH-------------EIPQQLNGS-DSGMFTCKYADYIS 203
Query: 324 FGLRFEFNASHVEYFRKKITVDIFNDDII 352
F + FRKK+ +I + ++
Sbjct: 204 RDKPITFTQHQMPLFRKKMVWEILHQQLL 232
>pdb|2OIX|A Chain A, Xanthomonas Xopd C470a Mutant
Length = 186
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 164 SMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLW---VTAHNVKIMTDVD 220
+ WL D H+ Y ++ + + PNA L H + LS A +++ D
Sbjct: 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDD 60
Query: 221 ---MLLIPVNLDGSHWVLARVDFRKNK----VWIYDSLLTFCDDKRY 260
++ +P+N +HW L VD R+NK + YDS+ +RY
Sbjct: 61 IPPIVFLPINQPNAHWSLLVVD-RRNKDAVAAYHYDSMAQKDPQQRY 106
>pdb|2OIV|A Chain A, Structural Analysis Of Xanthomonas Xopd Provides Insights
Into Substrate Specificity Of Ubiquitin-Like Protein
Proteases
Length = 186
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 164 SMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLW---VTAHNVKIMTDVD 220
+ WL D H+ Y ++ + + PNA L H + LS A +++ D
Sbjct: 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDD 60
Query: 221 ---MLLIPVNLDGSHWVLARVDFRKNK----VWIYDSLLTFCDDKRY 260
++ +P+N +HW L VD R+NK + YDS+ +RY
Sbjct: 61 IPPIVFLPINQPNAHWSLLVVD-RRNKDAVAAYHYDSMAQKDPQQRY 106
>pdb|2Q2E|A Chain A, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 369
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 133 DEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHI 173
DE D W GD R + + FQ++ T + +L +EH+
Sbjct: 53 DESDVWVYGDRESERSAKTVKGAFQLLKTTYATDFLINEHL 93
>pdb|2I48|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With Carbonic
Acid
pdb|2I49|A Chain A, Crystal Structure Of Apo Form Of Bicarbonate Transport
Protein Cmpa From Synechocystis Sp. Pcc 6803
pdb|2I4B|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With
Bicarbonate And Calcium
pdb|2I4C|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With
Bicarbonate And Calcium
Length = 429
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 202 FWLSLWVTAHNVKIMTDVDMLLIP 225
FW+ W A V TD+D+L +P
Sbjct: 177 FWIRYWFAAGGVDPDTDIDLLAVP 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,379,033
Number of Sequences: 62578
Number of extensions: 488540
Number of successful extensions: 1011
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 17
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)