Query 037741
Match_columns 353
No_of_seqs 234 out of 1190
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 2.2E-43 7.6E-48 326.3 20.6 179 155-352 35-226 (226)
2 2xph_A Sentrin-specific protea 100.0 2.5E-43 8.7E-48 328.4 18.6 179 155-352 47-238 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 2.1E-40 7.2E-45 305.5 23.0 176 154-351 35-220 (221)
4 2bkr_A Sentrin-specific protea 100.0 4.5E-35 1.5E-39 267.9 14.8 172 155-348 14-208 (212)
5 3eay_A Sentrin-specific protea 100.0 3.9E-34 1.3E-38 276.3 15.1 176 155-348 36-312 (323)
6 2oix_A Xanthomonas outer prote 100.0 1.8E-31 6.2E-36 240.0 12.3 163 164-349 1-181 (186)
7 4ekf_A Adenain; alpha and beta 97.0 0.0037 1.3E-07 55.3 10.0 86 229-325 51-136 (204)
8 2cxa_A Leucyl/phenylalanyl-tRN 11.5 1.1E+02 0.0037 28.1 2.2 19 163-181 124-142 (256)
9 1cxq_A Avian sarcoma virus int 10.7 3.3E+02 0.011 21.5 4.9 33 215-249 13-45 (162)
10 1wij_A Ethylene-insensitive3-l 8.7 32 0.0011 28.4 -2.1 33 58-90 83-115 (140)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=2.2e-43 Score=326.30 Aligned_cols=179 Identities=25% Similarity=0.421 Sum_probs=156.9
Q ss_pred chhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHhhhhhcccc--------cccccccceEEEee
Q 037741 155 FFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN--------VKIMTDVDMLLIPV 226 (353)
Q Consensus 155 ~~~dL~~L~~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~~L~~~gy~--------v~lf~d~d~I~iPI 226 (353)
..+|+.||.+++||||+|||||+++|.++..+.. .+++++|||||+++|.+.||+ +++|+ +++||+||
T Consensus 35 ~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~---~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~-~~~i~iPi 110 (226)
T 1th0_A 35 TRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQG---YPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFE-QEIILVPI 110 (226)
T ss_dssp EHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHT---CCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGG-SSEEEEEE
T ss_pred EHHHHhhcCCCCccChHHHHHHHHHHHHhhhhcc---CCcEEEEeHHHHHHhhhcccHHHHHHhhcCCccc-CCEEEEeE
Confidence 4559999999999999999999999987764432 579999999999999987763 68888 99999999
Q ss_pred cCCCCceEEEEEEccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC---CeEEee--eCCC
Q 037741 227 NLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEY---PWKVIA--VKSA 301 (353)
Q Consensus 227 n~~~~HW~LlVId~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~---~w~~~~--~~~v 301 (353)
|. ++||+|+|||+++++|.+||||++.+... ++.| .+|+..++..+. +.++ +|+... ..++
T Consensus 111 n~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~l-------~~~l~~e~~~k~-~~~~~~~~w~~~~~~~~~~ 176 (226)
T 1th0_A 111 HR-KVHWSLVVIDLRKKCLKYLDSMGQKGHRI-----CEIL-------LQYLQDESKTKR-NSDLNLLEWTHHSMKPHEI 176 (226)
T ss_dssp EE-TTEEEEEEEETTTTEEEEECTTCCCCHHH-----HHHH-------HHHHHHHHHHHT-SCCCCGGGCEEEECCTTTS
T ss_pred Ee-CcEEEEEEEEcCCCceEEEcCCCCCchHH-----HHHH-------HHHHHHHHHHhc-CCCCCcccceeccccCCCC
Confidence 98 99999999999999999999999887655 5556 788887766554 4443 788754 3689
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHCCCCcccChhhHHHHHHHHHHHHHhCCcC
Q 037741 302 PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDII 352 (353)
Q Consensus 302 PqQ~Ngt~DCGVFvl~~ae~l~~~~~~~ftq~dm~~~R~~m~~eLl~~~l~ 352 (353)
|||.|| +|||||||+||++++++.+++|+|++|+.||++|+.||++++||
T Consensus 177 PqQ~Ng-~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~ 226 (226)
T 1th0_A 177 PQQLNG-SDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 226 (226)
T ss_dssp CCCCSS-SCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCC-CCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence 999999 99999999999999999999999999999999999999999997
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=2.5e-43 Score=328.40 Aligned_cols=179 Identities=31% Similarity=0.613 Sum_probs=156.6
Q ss_pred chhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHhhhhhcccc--------cccccccceEEEee
Q 037741 155 FFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN--------VKIMTDVDMLLIPV 226 (353)
Q Consensus 155 ~~~dL~~L~~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~~L~~~gy~--------v~lf~d~d~I~iPI 226 (353)
..+|+.||.+++||||+|||||+++|.++..... .+++++|+|||+++|.+.||+ +++|+ +|+||+||
T Consensus 47 ~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~---~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~-~~~i~iPi 122 (238)
T 2xph_A 47 TRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFS-VDILLVPI 122 (238)
T ss_dssp CHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTT---SCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGG-SSEEEEEE
T ss_pred eHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcC---CCceeeeecHHHHHhhhcccHHHHHHhccCCccc-CCEEEEcc
Confidence 4559999999999999999999999998764332 579999999999999987763 78898 99999999
Q ss_pred cCCCCceEEEEEEccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC---CeEEee--eCCC
Q 037741 227 NLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEY---PWKVIA--VKSA 301 (353)
Q Consensus 227 n~~~~HW~LlVId~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~---~w~~~~--~~~v 301 (353)
|. ++||+|+|||+++++|.+||||++.+... ++.+ .+||..++..+. +.++ +|++.. ..++
T Consensus 123 n~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~-----~~~l-------~~~L~~e~~~k~-~~~~~~~~w~~~~~~~~~~ 188 (238)
T 2xph_A 123 HL-GVHWCLAVVDFRKKNITYYDSMGGINNEA-----CRIL-------LQYLKQESIDKK-RKEFDTNGWQLFSKKSQEI 188 (238)
T ss_dssp EE-TTEEEEEEEETTTTEEEEECTTCCCCHHH-----HHHH-------HHHHHHHHHHHH-CSCCCCTTCEEEECCSSSS
T ss_pred cC-CCceEEEEEEcccceEEEeecccCCCHHH-----HHHH-------HHHHHHHHHHhc-CCCcCcccceecccCCCCC
Confidence 98 89999999999999999999999887655 5555 777777766543 3333 798753 4689
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHCCCCcccChhhHHHHHHHHHHHHHhCCcC
Q 037741 302 PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDII 352 (353)
Q Consensus 302 PqQ~Ngt~DCGVFvl~~ae~l~~~~~~~ftq~dm~~~R~~m~~eLl~~~l~ 352 (353)
|||.|| +|||||||+||++++++.+++|+|++|+.||++|+.||++++||
T Consensus 189 PqQ~Ng-~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ll 238 (238)
T 2xph_A 189 PQQMNG-SDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL 238 (238)
T ss_dssp CCCSBG-GGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCC-CCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCCCC
Confidence 999999 99999999999999999999999999999999999999999997
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=2.1e-40 Score=305.49 Aligned_cols=176 Identities=24% Similarity=0.378 Sum_probs=150.5
Q ss_pred cchhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHhhhhhcccc----------cccccccceEE
Q 037741 154 SFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN----------VKIMTDVDMLL 223 (353)
Q Consensus 154 ~~~~dL~~L~~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~~L~~~gy~----------v~lf~d~d~I~ 223 (353)
...+|+.||.+++||||+|||||+++|.+. .+++++|+|||+++|.+.||+ +++|+ +|+||
T Consensus 35 i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~--------~~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~-~~~i~ 105 (221)
T 1euv_A 35 ITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDK-LDKIF 105 (221)
T ss_dssp EEHHHHGGGSTTCCCBHHHHHHHHHHHHHH--------STTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGG-CSEEE
T ss_pred EEHHHHhhhcCCCCCCHHHHHHHHHHHHhc--------CCCeEEEEcHHHHHhhhhccHHHHHHHHhccCCccc-CCEEE
Confidence 345699999999999999999999999865 578999999999999887763 46778 99999
Q ss_pred EeecCCCCceEEEEEEccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCeEEeeeCCCCC
Q 037741 224 IPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQ 303 (353)
Q Consensus 224 iPIn~~~~HW~LlVId~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~~w~~~~~~~vPq 303 (353)
+|||.+++||+|+|||+++++|.+||||++...... ..++..+.+|+..++..+. +. +|++.. ..+||
T Consensus 106 iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~--------~~i~~~l~~~l~~e~~~~~-~~--~~~~~~-~~~Pq 173 (221)
T 1euv_A 106 TPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMS--------FAILTDLQKYVMEESKHTI-GE--DFDLIH-LDCPQ 173 (221)
T ss_dssp EEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHH--------HHHHHHHHHHHHHHTTSSS-CT--TCEEEE-ECCCC
T ss_pred EEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchH--------HHHHHHHHHHHHHHHHHhc-CC--CceEee-cCCCC
Confidence 999997799999999999999999999986544321 1123344889888877654 44 566553 58999
Q ss_pred CCCCCCCcHHHHHHHHHHHHCCCCcccChhhHHHHHHHHHHHHHhCCc
Q 037741 304 QEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDI 351 (353)
Q Consensus 304 Q~Ngt~DCGVFvl~~ae~l~~~~~~~ftq~dm~~~R~~m~~eLl~~~l 351 (353)
|.|| +|||||||+||++++++.+++|+|++|+.+|++|+.+|++++|
T Consensus 174 Q~N~-~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~l 220 (221)
T 1euv_A 174 QPNG-YDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDAL 220 (221)
T ss_dssp CSSS-STHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCC-cCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhccC
Confidence 9999 9999999999999999999999999999999999999999987
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=4.5e-35 Score=267.91 Aligned_cols=172 Identities=19% Similarity=0.189 Sum_probs=136.3
Q ss_pred chhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEc---hhhHhhhhh-ccc-----ccccccccceEEEe
Q 037741 155 FFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTD---TFFWLSLWV-TAH-----NVKIMTDVDMLLIP 225 (353)
Q Consensus 155 ~~~dL~~L~~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fn---sff~~~L~~-~gy-----~v~lf~d~d~I~iP 225 (353)
..+|+.||.+++||||+|||||+++|.++..++. .+++++|+ |||+..+.. .+. .+++++ +++||+|
T Consensus 14 ~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~---~~~~~~~~p~~s~f~~~~~~~~~v~~~~~~~~l~~-~~~i~iP 89 (212)
T 2bkr_A 14 RQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDS---SDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPN-KRVVFLA 89 (212)
T ss_dssp EHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGG---TTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGGG-CSEEEEE
T ss_pred eHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCC---CCcEEEEChHHHHHHHhCCCHHHHHHHhccccccc-CCEEEEE
Confidence 4459999999999999999999999998875432 46899999 899865532 111 168898 9999999
Q ss_pred ecC------CCCceEEEEEEccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCeEEeeeC
Q 037741 226 VNL------DGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVK 299 (353)
Q Consensus 226 In~------~~~HW~LlVId~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~~w~~~~~~ 299 (353)
||. +++||+|+||++++++|.+||||++.+... .+.+ +..+..|+..+.. .|.+. ..
T Consensus 90 In~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~-----~~~l---~~~l~~~l~~~~~--------~~~~~-~~ 152 (212)
T 2bkr_A 90 INDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH-----AKQV---AEKLEAFLGRKGD--------KLAFV-EE 152 (212)
T ss_dssp EECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH-----HHHH---HHHHHHHHSCTTC--------CCCEE-EC
T ss_pred EecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHH-----HHHH---HHHHHHHhCCccc--------cceEe-EC
Confidence 996 589999999999999999999999876554 3333 3334666543221 23343 36
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHCCC----C----cccChhhHHHHHHHHHHHHHh
Q 037741 300 SAPQQEPGTGDCGVFVLMVTMYLMFGL----R----FEFNASHVEYFRKKITVDIFN 348 (353)
Q Consensus 300 ~vPqQ~Ngt~DCGVFvl~~ae~l~~~~----~----~~ftq~dm~~~R~~m~~eLl~ 348 (353)
++|||.|| +|||||||+||++++++. + ..|++++|..+|++|+..|+.
T Consensus 153 ~~PqQ~N~-~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 153 KAPAQQNS-YDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp CCCCCSSS-STHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC-CcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 89999999 999999999999998875 2 358999999999999988864
No 5
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=276.33 Aligned_cols=176 Identities=22% Similarity=0.310 Sum_probs=140.0
Q ss_pred chhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHhhhhhc----------------ccc------
Q 037741 155 FFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVT----------------AHN------ 212 (353)
Q Consensus 155 ~~~dL~~L~~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~~L~~~----------------gy~------ 212 (353)
..+||.||.+++||||+|||||+++|........ ..+++|+||||||++|.+. +|.
T Consensus 36 t~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~--~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWt 113 (323)
T 3eay_A 36 TNEDLECLEEGEFLNDVIIDFYLKYLILEKASDE--LVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWT 113 (323)
T ss_dssp EHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHH--HHHTEEECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGG
T ss_pred EHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcccc--ccCcEEEEchHHHHHHHhcccccccccccchhHHHHHHHHHHHH
Confidence 3459999999999999999999999864322111 1468999999999999853 232
Q ss_pred --cccccccceEEEeecCCCCceEEEEEEccCC-----------------------------------------------
Q 037741 213 --VKIMTDVDMLLIPVNLDGSHWVLARVDFRKN----------------------------------------------- 243 (353)
Q Consensus 213 --v~lf~d~d~I~iPIn~~~~HW~LlVId~~~~----------------------------------------------- 243 (353)
+++|+ +|+||||||. +.||+|+||+++..
T Consensus 114 rkvdlf~-kD~I~IPIn~-~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 191 (323)
T 3eay_A 114 RHINIFN-KDYIFVPVNE-SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQS 191 (323)
T ss_dssp TTCCGGG-CSEEEEEEEE-TTEEEEEEEECTTCSSCBCC-----------------------------------------
T ss_pred hhccccc-CCEEEEecCC-CCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999 9999999999 99999999998642
Q ss_pred ---------------ceeeeccCCCCC-chhHHHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCC---CeEEeeeCCCCC
Q 037741 244 ---------------KVWIYDSLLTFC-DDKRYKLKFKSLKVIFPRWLEYVGFYNIRPEL-RSEY---PWKVIAVKSAPQ 303 (353)
Q Consensus 244 ---------------~I~~yDSL~~~~-~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l-~~~~---~w~~~~~~~vPq 303 (353)
+|.|||||++.. ... ++.| ++||..|+..+.. ..++ .|... ...+||
T Consensus 192 ~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~-----~~~L-------r~YL~~E~~~k~~~~~~f~~~~~~~~-~~~~P~ 258 (323)
T 3eay_A 192 TESNMSVPKKMCKRPCILILDSLKAASVQNT-----VQNL-------REYLEVEWEVKLKTHRQFSKTNMVDL-CPKVPK 258 (323)
T ss_dssp --------CCCCBCSEEEEECSSCCSSHHHH-----HHHH-------HHHHHHHHHHHHSSCCCCCTTTSCEE-CCBCCC
T ss_pred cccccccccccCCCCeEEEEECCCCCCcchH-----HHHH-------HHHHHHHHHhhcCCCcCCCHhHceec-cCCCCC
Confidence 599999999865 333 5556 9999999887641 2233 56544 357999
Q ss_pred CCCCCCCcHHHHHHHHHHHHCCCCcc----------cChhhHHHHHHHHHHHHHh
Q 037741 304 QEPGTGDCGVFVLMVTMYLMFGLRFE----------FNASHVEYFRKKITVDIFN 348 (353)
Q Consensus 304 Q~Ngt~DCGVFvl~~ae~l~~~~~~~----------ftq~dm~~~R~~m~~eLl~ 348 (353)
|.|| +|||||||+||++++.+.+++ |+++.|...|..|..-|+.
T Consensus 259 Q~N~-~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~ 312 (323)
T 3eay_A 259 QDNS-SDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILK 312 (323)
T ss_dssp CCST-TCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999988543 6778999999998876653
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.97 E-value=1.8e-31 Score=240.00 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHhhhhh---cccc-----cccccccceEEEeecCCCCceEE
Q 037741 164 SMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWV---TAHN-----VKIMTDVDMLLIPVNLDGSHWVL 235 (353)
Q Consensus 164 ~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~~L~~---~gy~-----v~lf~d~d~I~iPIn~~~~HW~L 235 (353)
+++||||+|||||+++|.++..+.+. ..+++++++++...+.. .++. ++.+.-+|+||||||.+++||+|
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~--~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~iPin~~~~HWsL 78 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPN--AHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSL 78 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTT--GGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTSCSEEEEEEEETTTEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccC--cceEEEECHHHHHHHHhCCHHHHHHHHHHcccccccCEEEEEEeCCCCccEE
Confidence 47999999999999999998754442 24599999765443332 2232 22211189999999998899999
Q ss_pred EEEEccCCce---eeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCeEEeeeCCCCCCCCCCCCcH
Q 037741 236 ARVDFRKNKV---WIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCG 312 (353)
Q Consensus 236 lVId~~~~~I---~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~~w~~~~~~~vPqQ~Ngt~DCG 312 (353)
+|||.+++++ .|||||++.+... + .++..+..++..+ . . ++. ..++|||.|| +|||
T Consensus 79 lvi~~~~~~~~~~~~~DSl~~~~~~~------~---~l~~~l~~~l~~~----~--~--~~~---~~~~PqQ~Ng-~DCG 137 (186)
T 2oix_A 79 LVVDRRNKDAVAAYHYDSMAQKDPQQ------R---YLADMAAYHLGLD----Y--Q--QTH---EMPIAIQSDG-YSAG 137 (186)
T ss_dssp EEEECSSTTSCEEEEECCCSSCCHHH------H---HHHHHHHHHTTCC----G--G--GCE---EECBCCCC---CCHH
T ss_pred EEEECCCCeeeeeEEEcCCCCCCHHH------H---HHHHHHHHHhCCC----c--c--ccc---cCCCCCCCCC-CCHH
Confidence 9999999999 9999999855432 1 2233335555321 1 0 222 3579999999 9999
Q ss_pred HHHHHHHHHHHCC----C---CcccChhhHHHHHHHHHHHHHhC
Q 037741 313 VFVLMVTMYLMFG----L---RFEFNASHVEYFRKKITVDIFND 349 (353)
Q Consensus 313 VFvl~~ae~l~~~----~---~~~ftq~dm~~~R~~m~~eLl~~ 349 (353)
||||+||++++++ . .-.++++++..+|+.|...|.+.
T Consensus 138 vfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 138 DHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999853 2 22478889999999999877653
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=97.02 E-value=0.0037 Score=55.26 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCCceEEEEEEccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCeEEeeeCCCCCCCCCC
Q 037741 229 DGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGT 308 (353)
Q Consensus 229 ~~~HW~LlVId~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~~w~~~~~~~vPqQ~Ngt 308 (353)
||.||.....|+..++++.||++|-.+.+- .++-.+- ....|+..+.... . +--.+.+...+.-|=.++
T Consensus 51 GGvHWiA~Aw~P~s~~~YmFDPfG~sd~~L------~qiY~F~--Y~~llkRSAL~ss-p-dRCv~LvkstqsVQcp~S- 119 (204)
T 4ekf_A 51 GGVHWMAFAWNPRSKTCYLFEPFGFSDQRL------KQVYQFE--YESLLRRSAIASS-P-DRCITLEKSTQSVQGPNS- 119 (204)
T ss_dssp -CCCEEEEEEETTTTEEEEECTBTTCSHHH------HHHHHHH--HHHHHHHHCC----------EEEECCSBCSCTTC-
T ss_pred CceeEEEeEecCCcceEEEeCCCCCCHHHH------HHHhhhh--HHHHHHHHhhcCC-C-CceeEEEeccccccCcCc-
Confidence 689999999999999999999999887653 3331100 0001222222111 0 101233333344455566
Q ss_pred CCcHHHHHHHHHHHHCC
Q 037741 309 GDCGVFVLMVTMYLMFG 325 (353)
Q Consensus 309 ~DCGVFvl~~ae~l~~~ 325 (353)
.-||+|.|.|+.++...
T Consensus 120 aACGLFC~lFL~aF~~~ 136 (204)
T 4ekf_A 120 AAAGLFCCMFLHAFANW 136 (204)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999999764
No 8
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=11.45 E-value=1.1e+02 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.5
Q ss_pred CCCCccChHHHHHHHHHHH
Q 037741 163 ASMGWLGDEHIHEYLRLIS 181 (353)
Q Consensus 163 ~~~~WLND~VIn~y~~lL~ 181 (353)
.++.|+++++|++|.++-.
T Consensus 124 ~~gTWI~~ei~~aY~~LH~ 142 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHE 142 (256)
T ss_dssp --CTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHh
Confidence 4689999999999998854
No 9
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=10.73 E-value=3.3e+02 Score=21.49 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=26.6
Q ss_pred cccccceEEEeecCCCCceEEEEEEccCCceeeec
Q 037741 215 IMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYD 249 (353)
Q Consensus 215 lf~d~d~I~iPIn~~~~HW~LlVId~~~~~I~~yD 249 (353)
.+. .|++.+|... +..|.+++||.-.+.+..+-
T Consensus 13 ~~~-~D~~~~~~~~-g~~yl~~~iD~~Sr~i~~~~ 45 (162)
T 1cxq_A 13 IWQ-TDFTLEPRMA-PRSWLAVTVDTASSAIVVTQ 45 (162)
T ss_dssp EEE-EEEEECGGGT-TSCEEEEEEETTTCCEEEEE
T ss_pred EEE-eeeeecccCC-CCEEEEEEEEcCCCeEEEEE
Confidence 456 7888888765 78999999999999887763
No 10
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1
Probab=8.74 E-value=32 Score=28.40 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=26.9
Q ss_pred CceEEEEeecCCCcccccccccccccccCCCCC
Q 037741 58 GESVQVFTEVPPGVSKFGRAYISSYVYNSPYMI 90 (353)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~ 90 (353)
|+.+-|++||+|.+-|++|.+..|.-+++-.++
T Consensus 83 ~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTa 115 (140)
T 1wij_A 83 GVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTA 115 (140)
T ss_dssp HHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhH
Confidence 556677899999999999999998887765443
Done!