BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037748
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
           Responsive Gene
          Length = 136

 Score = 34.7 bits (78), Expect = 0.094,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 11  GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKI 70
           G LE+ +  A+ + +    +N D Y + +      +   + V  G G  PE+NE  I  +
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 71  NQLDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120
           ++     LK +I+         ED  +G A +P+  V   G +    YN+
Sbjct: 67  SE-GTTELKAKIFDKDVG---TEDDAVGEATIPLEPVFVEGSIPPTAYNV 112


>pdb|1JKG|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
           Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
           Export Factor
 pdb|1JN5|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
           Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
           Factor
          Length = 250

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 334 QVFSAPMGTINLEAEQSAMQQQIVDMYMRSMQQFTESLAKMKLP 377
           Q FS   G +NLE  Q  +Q    D Y RS Q FT   AK ++P
Sbjct: 203 QAFSTQSG-MNLEWSQKCLQDNNWD-YTRSAQAFTHLKAKGEIP 244


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,222,414
Number of Sequences: 62578
Number of extensions: 393290
Number of successful extensions: 871
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 6
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)