Query 037748
Match_columns 424
No_of_seqs 134 out of 167
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 1.5E-25 3.3E-30 194.0 13.6 121 10-139 1-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 1.1E-23 2.4E-28 175.8 13.2 118 11-139 1-118 (118)
3 cd04051 C2_SRC2_like C2 domain 99.9 2.1E-22 4.5E-27 169.9 11.9 117 12-135 1-125 (125)
4 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.2E-20 4.8E-25 166.4 13.1 125 12-142 1-134 (150)
5 cd04044 C2A_Tricalbin-like C2 99.8 3.5E-20 7.5E-25 154.5 12.9 123 10-141 1-124 (124)
6 cd04022 C2A_MCTP_PRT_plant C2 99.8 6.9E-20 1.5E-24 155.9 12.3 122 12-140 1-126 (127)
7 cd08682 C2_Rab11-FIP_classI C2 99.8 1.3E-19 2.8E-24 154.1 12.9 118 13-137 1-125 (126)
8 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.8E-19 6.1E-24 148.8 13.7 118 11-139 1-118 (119)
9 cd04036 C2_cPLA2 C2 domain pre 99.8 4.1E-19 8.9E-24 149.3 13.8 117 13-140 2-118 (119)
10 cd08375 C2_Intersectin C2 doma 99.8 8.6E-19 1.9E-23 153.4 14.1 122 7-140 11-136 (136)
11 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.1E-18 2.4E-23 147.1 14.0 120 13-141 2-121 (121)
12 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.9E-19 2.1E-23 148.7 12.7 123 12-139 1-132 (133)
13 cd04049 C2_putative_Elicitor-r 99.8 6.9E-19 1.5E-23 148.7 11.0 105 11-122 1-108 (124)
14 cd04046 C2_Calpain C2 domain p 99.8 4.7E-18 1E-22 145.3 15.0 121 10-142 2-124 (126)
15 cd08391 C2A_C2C_Synaptotagmin_ 99.8 2.9E-18 6.4E-23 142.4 12.7 115 11-139 1-121 (121)
16 cd04024 C2A_Synaptotagmin-like 99.8 3.3E-18 7.1E-23 143.7 13.0 122 11-139 1-128 (128)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.5E-18 5.5E-23 150.2 12.2 118 12-135 1-125 (126)
18 cd04015 C2_plant_PLD C2 domain 99.8 4.2E-18 9E-23 152.6 13.5 122 10-140 6-158 (158)
19 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.7E-18 1.5E-22 140.5 12.8 116 12-141 1-116 (116)
20 cd08382 C2_Smurf-like C2 domai 99.8 6.8E-18 1.5E-22 143.8 12.7 120 13-138 2-123 (123)
21 cd04050 C2B_Synaptotagmin-like 99.8 6.4E-18 1.4E-22 139.8 11.5 101 13-123 2-103 (105)
22 cd08678 C2_C21orf25-like C2 do 99.8 1.9E-17 4.2E-22 141.0 14.2 120 13-141 1-121 (126)
23 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.8E-17 4E-22 142.2 13.9 121 10-141 3-124 (126)
24 cd04043 C2_Munc13_fungal C2 do 99.7 2.2E-17 4.7E-22 139.3 13.6 119 12-141 2-122 (126)
25 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.3E-17 2.9E-22 141.6 12.2 120 12-138 1-120 (121)
26 cd04014 C2_PKC_epsilon C2 doma 99.7 2.2E-17 4.8E-22 141.4 13.5 119 9-142 2-131 (132)
27 cd08378 C2B_MCTP_PRT_plant C2 99.7 2E-17 4.3E-22 141.5 12.8 116 12-140 1-120 (121)
28 cd08373 C2A_Ferlin C2 domain f 99.7 2.8E-17 6.2E-22 139.6 13.5 119 17-146 2-122 (127)
29 cd08395 C2C_Munc13 C2 domain t 99.7 2.3E-17 5E-22 143.1 12.2 106 12-123 1-113 (120)
30 cd04040 C2D_Tricalbin-like C2 99.7 3.5E-17 7.5E-22 135.8 12.6 114 13-135 1-114 (115)
31 KOG1030 Predicted Ca2+-depende 99.7 1.8E-17 3.9E-22 152.5 10.4 118 7-136 2-119 (168)
32 cd04041 C2A_fungal C2 domain f 99.7 2.9E-17 6.2E-22 137.4 10.7 103 11-121 1-107 (111)
33 cd08381 C2B_PI3K_class_II C2 d 99.7 5.4E-17 1.2E-21 139.1 11.2 105 10-120 12-121 (122)
34 cd04045 C2C_Tricalbin-like C2 99.7 8.8E-17 1.9E-21 137.4 11.2 105 11-124 1-105 (120)
35 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.5E-16 3.3E-21 134.2 12.5 118 12-137 1-122 (123)
36 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.6E-16 5.5E-21 134.7 13.7 119 13-139 2-121 (121)
37 cd08521 C2A_SLP C2 domain firs 99.7 1.4E-16 3.1E-21 133.3 11.4 107 9-120 12-123 (123)
38 cd08691 C2_NEDL1-like C2 domai 99.7 3.1E-16 6.6E-21 138.7 14.1 122 12-137 2-136 (137)
39 cd00275 C2_PLC_like C2 domain 99.7 4.9E-16 1.1E-20 130.2 14.7 118 12-139 3-127 (128)
40 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.5E-16 3.2E-21 134.2 11.3 108 9-121 14-123 (124)
41 cd08394 C2A_Munc13 C2 domain f 99.7 1.4E-16 3.1E-21 140.7 10.7 100 10-122 1-101 (127)
42 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.7E-16 6E-21 132.8 11.9 109 9-122 14-124 (124)
43 cd04029 C2A_SLP-4_5 C2 domain 99.7 4.7E-16 1E-20 133.8 11.4 109 8-121 12-125 (125)
44 cd04027 C2B_Munc13 C2 domain s 99.7 8.1E-16 1.8E-20 131.7 12.8 118 12-137 2-127 (127)
45 cd08383 C2A_RasGAP C2 domain ( 99.7 1E-15 2.2E-20 126.8 12.8 114 13-139 2-117 (117)
46 cd08392 C2A_SLP-3 C2 domain fi 99.7 5.6E-16 1.2E-20 134.6 11.3 108 9-120 13-127 (128)
47 cd04030 C2C_KIAA1228 C2 domain 99.7 5.5E-16 1.2E-20 130.7 10.8 109 9-120 14-126 (127)
48 cd08685 C2_RGS-like C2 domain 99.7 4.2E-16 9.2E-21 133.4 10.2 106 10-120 11-119 (119)
49 cd04021 C2_E3_ubiquitin_ligase 99.7 1.6E-15 3.5E-20 130.0 13.1 117 12-137 3-124 (125)
50 cd04017 C2D_Ferlin C2 domain f 99.7 1.2E-15 2.6E-20 131.9 12.4 120 12-141 2-133 (135)
51 cd04039 C2_PSD C2 domain prese 99.7 6.6E-16 1.4E-20 130.4 10.1 91 11-108 1-96 (108)
52 cd08393 C2A_SLP-1_2 C2 domain 99.6 1E-15 2.2E-20 131.3 11.2 107 9-120 13-124 (125)
53 cd08389 C2A_Synaptotagmin-14_1 99.6 9.8E-16 2.1E-20 131.4 10.9 107 9-121 14-123 (124)
54 cd04028 C2B_RIM1alpha C2 domai 99.6 1.3E-15 2.7E-20 136.6 12.0 109 10-123 28-139 (146)
55 cd08688 C2_KIAA0528-like C2 do 99.6 6.9E-16 1.5E-20 128.9 9.6 102 13-121 1-108 (110)
56 cd04052 C2B_Tricalbin-like C2 99.6 1.1E-15 2.3E-20 128.2 10.7 104 26-141 7-110 (111)
57 cd08388 C2A_Synaptotagmin-4-11 99.6 1.4E-15 3E-20 131.3 11.4 107 10-121 15-127 (128)
58 cd08680 C2_Kibra C2 domain fou 99.6 1.2E-15 2.5E-20 132.7 9.9 108 9-120 12-124 (124)
59 cd08390 C2A_Synaptotagmin-15-1 99.6 3.1E-15 6.8E-20 125.4 12.0 109 8-121 11-122 (123)
60 cd08386 C2A_Synaptotagmin-7 C2 99.6 2.3E-15 5.1E-20 126.8 11.0 108 9-121 14-124 (125)
61 cd04031 C2A_RIM1alpha C2 domai 99.6 2.4E-15 5.1E-20 126.2 10.9 106 9-120 14-124 (125)
62 cd08676 C2A_Munc13-like C2 dom 99.6 4.5E-15 9.8E-20 133.9 11.8 104 7-120 24-153 (153)
63 cd04010 C2B_RasA3 C2 domain se 99.6 3.8E-15 8.2E-20 133.3 10.7 103 13-122 2-122 (148)
64 cd04018 C2C_Ferlin C2 domain t 99.6 4.5E-15 9.8E-20 133.5 9.9 110 12-133 1-131 (151)
65 cd08675 C2B_RasGAP C2 domain s 99.6 7.5E-15 1.6E-19 128.5 10.6 105 13-123 1-121 (137)
66 cd00276 C2B_Synaptotagmin C2 d 99.6 1.7E-15 3.7E-20 127.9 6.3 107 10-123 13-123 (134)
67 cd04011 C2B_Ferlin C2 domain s 99.6 9.6E-15 2.1E-19 121.8 10.6 100 12-122 5-110 (111)
68 cd08677 C2A_Synaptotagmin-13 C 99.6 1.2E-14 2.6E-19 127.0 10.1 97 9-112 12-112 (118)
69 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.4E-14 3E-19 124.7 10.4 107 9-122 13-123 (136)
70 cd04032 C2_Perforin C2 domain 99.6 1.8E-14 3.9E-19 126.2 11.1 96 5-108 22-118 (127)
71 cd08384 C2B_Rabphilin_Doc2 C2 99.6 2.4E-14 5.2E-19 122.3 10.6 107 9-122 11-121 (133)
72 cd04038 C2_ArfGAP C2 domain pr 99.6 2E-14 4.3E-19 128.2 10.2 93 10-111 1-93 (145)
73 cd08403 C2B_Synaptotagmin-3-5- 99.6 9.7E-15 2.1E-19 125.4 7.8 108 9-123 12-123 (134)
74 cd04009 C2B_Munc13-like C2 dom 99.5 3.5E-14 7.5E-19 122.5 10.7 98 9-110 14-119 (133)
75 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 4.4E-14 9.5E-19 127.4 11.4 109 9-122 25-138 (162)
76 cd08409 C2B_Synaptotagmin-15 C 99.5 3.8E-14 8.3E-19 123.7 10.6 107 10-122 14-124 (137)
77 cd04035 C2A_Rabphilin_Doc2 C2 99.5 6.1E-14 1.3E-18 118.4 10.9 99 9-112 13-116 (123)
78 cd08402 C2B_Synaptotagmin-1 C2 99.5 6.7E-14 1.5E-18 120.5 11.4 107 9-122 13-123 (136)
79 cd04026 C2_PKC_alpha_gamma C2 99.5 7.2E-14 1.6E-18 119.1 10.8 108 11-124 13-123 (131)
80 cd04048 C2A_Copine C2 domain f 99.5 1.3E-13 2.9E-18 116.3 11.7 104 16-121 5-113 (120)
81 cd08404 C2B_Synaptotagmin-4 C2 99.5 4.4E-14 9.6E-19 121.9 8.3 114 9-131 13-130 (136)
82 PLN03008 Phospholipase D delta 99.5 1.3E-13 2.7E-18 151.3 13.4 124 9-141 12-178 (868)
83 PF00168 C2: C2 domain; Inter 99.5 1E-13 2.2E-18 106.1 7.8 85 13-101 1-85 (85)
84 cd04037 C2E_Ferlin C2 domain f 99.5 1.8E-13 3.8E-18 117.3 10.1 92 12-108 1-92 (124)
85 PLN03200 cellulose synthase-in 99.5 1.6E-13 3.6E-18 161.0 13.0 122 7-141 1976-2101(2102)
86 cd08686 C2_ABR C2 domain in th 99.5 6.2E-13 1.3E-17 116.5 12.7 99 13-120 1-107 (118)
87 cd04013 C2_SynGAP_like C2 doma 99.5 7.9E-13 1.7E-17 119.0 13.1 127 5-142 5-141 (146)
88 cd04047 C2B_Copine C2 domain s 99.5 3.2E-13 7E-18 111.7 9.7 89 15-108 4-99 (110)
89 cd08406 C2B_Synaptotagmin-12 C 99.5 6.1E-13 1.3E-17 117.2 11.4 106 10-122 14-123 (136)
90 cd08410 C2B_Synaptotagmin-17 C 99.4 3.7E-13 8.1E-18 116.8 9.6 108 10-123 13-124 (135)
91 cd08407 C2B_Synaptotagmin-13 C 99.4 5.7E-13 1.2E-17 118.3 10.6 105 9-120 13-123 (138)
92 cd08690 C2_Freud-1 C2 domain f 99.4 2.1E-12 4.4E-17 117.3 14.3 123 12-141 3-138 (155)
93 cd08408 C2B_Synaptotagmin-14_1 99.4 6.7E-13 1.5E-17 116.7 9.4 108 8-122 12-125 (138)
94 cd00030 C2 C2 domain. The C2 d 99.3 2.2E-11 4.8E-16 92.6 10.4 102 13-120 1-102 (102)
95 smart00239 C2 Protein kinase C 99.3 2.8E-11 6E-16 93.4 10.1 94 12-109 1-94 (101)
96 cd08692 C2B_Tac2-N C2 domain s 99.3 2.6E-11 5.6E-16 108.3 9.4 96 9-107 12-110 (135)
97 PLN02270 phospholipase D alpha 99.2 1.3E-10 2.8E-15 127.6 13.3 124 10-143 7-151 (808)
98 KOG1028 Ca2+-dependent phospho 99.2 2.7E-10 5.8E-15 117.5 13.1 128 10-143 166-297 (421)
99 PLN02952 phosphoinositide phos 99.0 3E-09 6.4E-14 114.4 14.7 121 10-140 469-597 (599)
100 cd08689 C2_fungal_Pkc1p C2 dom 99.0 4.9E-10 1.1E-14 97.4 6.9 84 13-108 1-87 (109)
101 PLN02223 phosphoinositide phos 98.9 7E-09 1.5E-13 110.2 13.1 106 10-123 408-520 (537)
102 COG5038 Ca2+-dependent lipid-b 98.9 6E-09 1.3E-13 117.3 12.6 132 6-147 431-564 (1227)
103 PLN02228 Phosphoinositide phos 98.9 2E-08 4.4E-13 107.5 15.2 124 10-141 430-562 (567)
104 PLN02222 phosphoinositide phos 98.9 3.7E-08 8.1E-13 105.7 14.8 120 10-139 451-580 (581)
105 PLN02230 phosphoinositide phos 98.8 5.2E-08 1.1E-12 104.9 14.5 106 10-123 468-581 (598)
106 cd08374 C2F_Ferlin C2 domain s 98.8 2.5E-08 5.4E-13 89.0 9.3 93 13-109 2-123 (133)
107 KOG0696 Serine/threonine prote 98.7 9.5E-09 2.1E-13 107.2 5.3 108 11-124 180-290 (683)
108 KOG1011 Neurotransmitter relea 98.7 2.2E-08 4.9E-13 107.9 7.4 124 8-140 292-424 (1283)
109 COG5038 Ca2+-dependent lipid-b 98.6 1.3E-07 2.8E-12 106.9 9.6 127 9-143 1038-1164(1227)
110 PLN02352 phospholipase D epsil 98.6 4.1E-07 9E-12 100.1 12.5 116 9-142 8-132 (758)
111 KOG0169 Phosphoinositide-speci 98.5 1.2E-06 2.5E-11 96.0 12.5 120 12-139 617-743 (746)
112 KOG1028 Ca2+-dependent phospho 98.0 1.6E-05 3.5E-10 82.5 9.0 93 10-106 297-393 (421)
113 KOG1264 Phospholipase C [Lipid 98.0 2E-05 4.2E-10 87.4 9.7 112 2-122 1052-1171(1267)
114 KOG1328 Synaptic vesicle prote 97.7 1.8E-05 3.9E-10 86.9 1.8 126 14-141 117-302 (1103)
115 KOG0905 Phosphoinositide 3-kin 97.6 4.2E-05 9E-10 87.4 4.4 108 10-122 1523-1635(1639)
116 KOG2059 Ras GTPase-activating 97.6 0.00033 7.1E-09 77.0 10.2 125 11-144 5-129 (800)
117 KOG1013 Synaptic vesicle prote 97.6 1.8E-05 4E-10 80.4 0.6 135 10-146 92-235 (362)
118 KOG1031 Predicted Ca2+-depende 97.5 0.00049 1.1E-08 74.7 9.9 121 10-140 2-136 (1169)
119 KOG2059 Ras GTPase-activating 97.2 0.00099 2.1E-08 73.3 8.0 108 30-141 149-277 (800)
120 cd08683 C2_C2cd3 C2 domain fou 96.9 0.0026 5.7E-08 58.0 6.5 107 13-120 1-143 (143)
121 KOG1011 Neurotransmitter relea 96.6 0.014 3.1E-07 64.4 10.9 109 11-123 1125-1238(1283)
122 PF10358 NT-C2: N-terminal C2 96.0 0.19 4.2E-06 43.5 12.8 119 11-141 7-136 (143)
123 PF11618 DUF3250: Protein of u 95.9 0.024 5.1E-07 49.3 6.7 87 46-140 11-105 (107)
124 KOG1265 Phospholipase C [Lipid 95.8 0.049 1.1E-06 61.9 10.0 118 8-140 700-825 (1189)
125 cd08380 C2_PI3K_like C2 domain 95.8 0.06 1.3E-06 48.1 8.9 94 11-107 8-107 (156)
126 PLN02964 phosphatidylserine de 95.7 0.016 3.5E-07 63.8 5.9 108 5-125 48-156 (644)
127 cd08684 C2A_Tac2-N C2 domain f 95.0 0.036 7.7E-07 48.1 4.6 87 15-107 3-92 (103)
128 cd08694 C2_Dock-A C2 domains f 94.8 0.16 3.5E-06 48.8 8.9 90 47-140 54-151 (196)
129 KOG1328 Synaptic vesicle prote 94.5 0.022 4.7E-07 63.7 2.4 98 10-112 946-1052(1103)
130 cd08398 C2_PI3K_class_I_alpha 93.9 0.28 6E-06 45.2 8.0 92 10-106 7-105 (158)
131 cd08693 C2_PI3K_class_I_beta_d 93.8 0.28 6.2E-06 45.5 7.9 93 11-106 8-119 (173)
132 cd08695 C2_Dock-B C2 domains f 93.7 0.24 5.2E-06 47.3 7.5 58 47-106 54-113 (189)
133 KOG3837 Uncharacterized conser 93.4 0.1 2.2E-06 55.4 4.8 125 9-141 365-504 (523)
134 PF14429 DOCK-C2: C2 domain in 93.4 0.57 1.2E-05 43.2 9.2 52 55-106 67-120 (184)
135 cd08679 C2_DOCK180_related C2 92.7 0.78 1.7E-05 42.3 9.1 59 47-106 53-115 (178)
136 cd08399 C2_PI3K_class_I_gamma 92.2 0.79 1.7E-05 43.3 8.5 94 11-106 10-121 (178)
137 cd04012 C2A_PI3K_class_II C2 d 92.0 0.57 1.2E-05 43.0 7.2 99 9-107 6-119 (171)
138 KOG1326 Membrane-associated pr 90.7 0.23 5.1E-06 57.1 3.9 109 9-123 611-724 (1105)
139 PF00792 PI3K_C2: Phosphoinosi 90.3 0.62 1.4E-05 41.2 5.5 72 33-107 3-85 (142)
140 KOG1326 Membrane-associated pr 88.6 0.12 2.7E-06 59.2 -0.2 114 12-137 207-329 (1105)
141 cd08397 C2_PI3K_class_III C2 d 88.1 1.6 3.4E-05 40.2 6.7 73 31-107 29-107 (159)
142 cd08687 C2_PKN-like C2 domain 87.9 3.3 7.3E-05 36.1 8.0 88 28-139 5-92 (98)
143 PF15625 CC2D2AN-C2: CC2D2A N- 86.9 6.3 0.00014 36.3 9.9 105 31-142 36-163 (168)
144 PF15627 CEP76-C2: CEP76 C2 do 86.8 14 0.0003 34.7 12.0 132 10-144 8-154 (156)
145 PF12416 DUF3668: Cep120 prote 86.6 10 0.00022 39.4 12.1 122 13-143 2-135 (340)
146 smart00142 PI3K_C2 Phosphoinos 86.4 2.8 6E-05 35.4 6.7 71 13-85 13-90 (100)
147 KOG1327 Copine [Signal transdu 85.4 2 4.2E-05 47.0 6.5 88 17-109 142-236 (529)
148 cd08697 C2_Dock-D C2 domains f 83.5 2.4 5.1E-05 40.5 5.5 59 47-106 57-123 (185)
149 cd08696 C2_Dock-C C2 domains f 82.4 2.6 5.7E-05 39.9 5.3 52 55-106 62-118 (179)
150 KOG1013 Synaptic vesicle prote 72.2 5.3 0.00011 41.7 4.5 88 10-106 232-321 (362)
151 KOG3543 Ca2+-dependent activat 71.6 26 0.00056 39.9 9.8 125 11-148 341-465 (1218)
152 cd05137 RasGAP_CLA2_BUD2 CLA2/ 69.0 7 0.00015 41.2 4.7 45 96-141 1-45 (395)
153 PF14924 DUF4497: Protein of u 59.8 28 0.00061 30.0 6.0 46 93-140 46-104 (112)
154 KOG1452 Predicted Rho GTPase-a 59.4 24 0.00052 37.2 6.3 117 9-140 49-167 (442)
155 PF00714 IFN-gamma: Interferon 55.5 6.8 0.00015 36.2 1.6 33 335-367 37-69 (138)
156 PF06219 DUF1005: Protein of u 48.9 1.6E+02 0.0035 32.1 10.5 131 10-141 11-168 (460)
157 KOG2060 Rab3 effector RIM1 and 37.9 31 0.00067 36.8 3.3 108 9-122 267-379 (405)
158 PRK10301 hypothetical protein; 35.2 57 0.0012 29.0 4.1 39 98-138 86-124 (124)
159 PF04234 CopC: CopC domain; I 30.5 63 0.0014 27.0 3.4 39 98-138 59-97 (97)
160 PF12416 DUF3668: Cep120 prote 30.2 5.8E+02 0.013 26.7 11.0 101 11-123 192-317 (340)
161 KOG1329 Phospholipase D1 [Lipi 29.6 72 0.0016 37.3 4.7 85 32-124 138-223 (887)
162 KOG1327 Copine [Signal transdu 29.4 94 0.002 34.5 5.4 87 23-110 2-105 (529)
163 KOG2419 Phosphatidylserine dec 26.1 16 0.00034 41.5 -1.2 83 6-106 275-361 (975)
164 PF07162 B9-C2: Ciliary basal 22.8 5.2E+02 0.011 23.7 8.3 83 16-107 7-104 (168)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.93 E-value=1.5e-25 Score=194.03 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=102.6
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhc
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRAR 89 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~ 89 (424)
+|+|+|+|++||+|++.+ ++++||||+|+|.+ ++++|+|+.++|.||+|||+|.|.|... ...|.++||...
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d--- 72 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH---AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDER--- 72 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC---EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCC---
Confidence 599999999999999999 89999999999966 6889999999999999999999999653 456888887632
Q ss_pred cccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 90 NYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 90 ~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
.+..|++||++.|||.+.+..|...+.||+|.... ..+..|.|+|+|+|
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~-~~~~~g~i~l~l~y 121 (121)
T cd04016 73 AFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQ-GEDKEGMINLVFSY 121 (121)
T ss_pred CCcCCceEEEEEEECchhccCCCCccccEeCcCcc-CCCCceEEEEEEeC
Confidence 23459999999999987665666588999997642 23568999999987
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.91 E-value=1.1e-23 Score=175.76 Aligned_cols=118 Identities=29% Similarity=0.400 Sum_probs=102.7
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcc
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARN 90 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~ 90 (424)
|+|.|+|++||||++.++++++||||+|++.+ .+++|++++.++.||+|||.|.|.|.......|.++||...+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~--- 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK--- 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC---CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC---
Confidence 89999999999999999999999999999976 678899999999999999999999975435679999987422
Q ss_pred ccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 91 YMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 91 ~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
.+|++||++.++|.+++..+. ...||+|..+ ++.+|.|+|+|+|
T Consensus 75 -~~~~~iG~~~~~l~~~~~~~~-~~~w~~L~~~---~~~~G~i~l~l~f 118 (118)
T cd08681 75 -RKPDLIGDTEVDLSPALKEGE-FDDWYELTLK---GRYAGEVYLELTF 118 (118)
T ss_pred -CCCcceEEEEEecHHHhhcCC-CCCcEEeccC---CcEeeEEEEEEEC
Confidence 359999999999999985444 6789999865 5789999999987
No 3
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.88 E-value=2.1e-22 Score=169.94 Aligned_cols=117 Identities=25% Similarity=0.443 Sum_probs=99.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc----CCCceEEEEEEeeh
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL----DGAVLKCEIWMLSR 87 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~----~~~~Lk~EV~~~~r 87 (424)
+|+|+|++|+||++.+.++++||||+|++.+ ..+++|++++.||.||+|||+|+|.|... ....|.++||...+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 6999999999999999999999999999965 46889999999999999999999999644 14678999987422
Q ss_pred hccccCCCccEEEEEechhhhcCCc----eeeeEEEccCCCCCCCCceEEEE
Q 037748 88 ARNYMEDQLLGFALVPISQVVGNGK----VVTQDYNLSSTDLFHSPAGTVKL 135 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlLa~G~----~~~~~f~Lss~DlfgkPaG~V~L 135 (424)
...|++||++.|||.+++..+. ....||+|..++ |+++|+|+|
T Consensus 79 ---~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 79 ---SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred ---CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 3469999999999999994332 146799999874 999999985
No 4
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=2.2e-20 Score=166.41 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=103.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
.|.|+|++||||+..+.++++||||+|+|.+ ++++|+++.+++.||+|||.|.|.|.......|.++||... ..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~---~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN---QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV---GP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC---EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec---CC
Confidence 4899999999999999999999999999976 78899999988999999999999996542457888887532 23
Q ss_pred cCCCccEEEEEechhhhc---CCceeeeEEEccCCC------CCCCCceEEEEEEEEecC
Q 037748 92 MEDQLLGFALVPISQVVG---NGKVVTQDYNLSSTD------LFHSPAGTVKLSLSVNTP 142 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlLa---~G~~~~~~f~Lss~D------lfgkPaG~V~LsLtf~~~ 142 (424)
..|++||++.|||.++.. .+....+||+|.... ...+.+|.|+|.+.|.+.
T Consensus 75 ~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 75 NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 469999999999999873 334367899998753 124779999999999954
No 5
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.84 E-value=3.5e-20 Score=154.52 Aligned_cols=123 Identities=25% Similarity=0.354 Sum_probs=99.7
Q ss_pred ceEEEEEEeecCCCCCCCCC-CCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehh
Q 037748 10 SGILEIFVHHARNIHNICIY-DNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRA 88 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~f-gKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~ 88 (424)
+|+|+|+|++|+||++.+++ +++||||+|++.++ ....+|++++ ++.||+|||.|.|.+... ...|.++||+...
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~-~~~~P~Wne~~~~~v~~~-~~~l~~~v~d~~~- 76 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKK-DTSNPVWNETKYILVNSL-TEPLNLTVYDFND- 76 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeec-CCCCCcceEEEEEEeCCC-CCEEEEEEEecCC-
Confidence 69999999999999988766 56999999999653 4678999886 589999999999999743 5789999987532
Q ss_pred ccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 89 RNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 89 ~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
...|++||++.+||.+++..+.....++.|.. .++++|.|+|+|.|.+
T Consensus 77 --~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 --KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred --CCCCceeEEEEEEHHHhccCccccCcchhhhc---CCccceEEEEEEEeCC
Confidence 34699999999999999955541224556653 4789999999999974
No 6
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=6.9e-20 Score=155.91 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=102.2
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc---CCCceEEEEEEeehh
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL---DGAVLKCEIWMLSRA 88 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~---~~~~Lk~EV~~~~r~ 88 (424)
.|.|+|++||||...+..++.||||+|++.+ ++++|++.+ ++.||+|||.|.|.+... .+..|.++||...
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~-- 74 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG---QKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR-- 74 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EEecceeEc-CCCCCccceEEEEEccCHHHccCCeEEEEEeeCC--
Confidence 3899999999999999999999999999975 578999985 789999999999999632 1356888887632
Q ss_pred cccc-CCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 89 RNYM-EDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 89 ~~~l-~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
.+. .|++||++.|||.++...|....+||+|.++..+++++|.|.|++.|+
T Consensus 75 -~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 75 -RSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred -CCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 233 699999999999999855554778999988766778999999999885
No 7
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=1.3e-19 Score=154.10 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=96.2
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecc-----cCCCceEEEEEEeeh
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQ-----LDGAVLKCEIWMLSR 87 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~-----~~~~~Lk~EV~~~~r 87 (424)
|.|+|++||||+..+..+++||||+|++.. .+++|+|++++ .||+|||+|.|.|.. .....|.++||...+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~---~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK---EKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC---eeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 579999999999999999999999999964 68899999876 999999999999965 235678888887432
Q ss_pred hccccCCCccEEEEEechhhh-cCCceeeeEEEccCCC-CCCCCceEEEEEE
Q 037748 88 ARNYMEDQLLGFALVPISQVV-GNGKVVTQDYNLSSTD-LFHSPAGTVKLSL 137 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlL-a~G~~~~~~f~Lss~D-lfgkPaG~V~LsL 137 (424)
+..|++||++.|||.++. ..|....+||+|.... ...+.+|.|+|++
T Consensus 77 ---~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 77 ---LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ---cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 335999999999999998 4565578999997531 1235679999986
No 8
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.82 E-value=2.8e-19 Score=148.77 Aligned_cols=118 Identities=22% Similarity=0.353 Sum_probs=100.0
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcc
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARN 90 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~ 90 (424)
|+|.|+|++|+||++.+.++++||||+|.+.+ .+.+|++.++ ..||+||++|.|.+... ...+.++||....
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~~T~~~~~-t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~--- 72 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN---ARLQTHTIYK-TLNPEWNKIFTFPIKDI-HDVLEVTVYDEDK--- 72 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC---EeeecceecC-CcCCccCcEEEEEecCc-CCEEEEEEEECCC---
Confidence 89999999999999999999999999999965 4679999875 69999999999999765 5688999987432
Q ss_pred ccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 91 YMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 91 ~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
...|++||.+.+||.++.. | ..+||+|..+...++.+|.|.|++.|
T Consensus 73 ~~~~~~iG~~~~~l~~~~~-~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIKN-G--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCCceeeEEEEEHHHCCC-C--CceEEECcccCCCCceeeEEEEEEEe
Confidence 3468999999999999863 2 34799998765566789999999987
No 9
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=4.1e-19 Score=149.34 Aligned_cols=117 Identities=23% Similarity=0.306 Sum_probs=97.5
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|.|+|++|++|++.+++++.||||+|++.+.+..+.+|+++++ +.||+|||+|.|.+.......|.++||...+ +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~---~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTVMDEDY---V- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEEEECCC---C-
Confidence 8899999999999999999999999999765567889999986 6899999999999964324568899987432 3
Q ss_pred CCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 93 EDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
.|++||++.+||.++.. |.....||+|.. +++|.|++++.+.
T Consensus 77 ~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~-----~~~g~l~~~~~~~ 118 (119)
T cd04036 77 MDDHLGTVLFDVSKLKL-GEKVRVTFSLNP-----QGKEELEVEFLLE 118 (119)
T ss_pred CCcccEEEEEEHHHCCC-CCcEEEEEECCC-----CCCceEEEEEEee
Confidence 79999999999999874 333788999964 4589999998863
No 10
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=8.6e-19 Score=153.37 Aligned_cols=122 Identities=20% Similarity=0.355 Sum_probs=99.6
Q ss_pred CCcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee
Q 037748 7 SEFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS 86 (424)
Q Consensus 7 ~~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~ 86 (424)
...+|.|.|+|++|+||++.+.+++.||||+|++.. .+++|+|++ +..||+||++|.|.+.......|.++||...
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~---~~~kT~vi~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS---QEHKTKVVS-DTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EeeeccccC-CCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 357899999999999999999999999999999954 688999987 4799999999999997653567999998742
Q ss_pred hhccccCCCccEEEEEechhhhc-C-Cc--eeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 87 RARNYMEDQLLGFALVPISQVVG-N-GK--VVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa-~-G~--~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
.+..|++||.+.|+|.+++. . +. ...+|.+|+ ++.+|.|+|+++|.
T Consensus 87 ---~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~~~~g~i~l~~~~~ 136 (136)
T cd08375 87 ---FFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH-----EVPTGEVVVKLDLQ 136 (136)
T ss_pred ---CCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----cccceeEEEEEEeC
Confidence 23468999999999999994 1 11 144566664 45689999999873
No 11
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.1e-18 Score=147.11 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=99.7
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|.|+|++||+|+..+++++.||||++++.+ ....+|++++ .+.||+|||+|.|.+... ...|.++||...+ ..
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~kT~~~~-~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~---~~ 74 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG--KTVYKSKTIY-KNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDR---GL 74 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC--EEEEEeeecc-CCCCCccceeEEEEecCC-CCeEEEEEEeCCC---CC
Confidence 899999999999999999999999999854 3578899886 479999999999999765 5689999987433 33
Q ss_pred CCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 93 EDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
.|++||.+.+||.++...+. ...||+|.... ..+-+|.|+|.++|.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~-~~~~~~L~~~~-~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKP-TEVKLKLEDPN-SDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCC-eEEEEECCCCC-CccCceEEEEEEEECC
Confidence 69999999999999985444 67899996532 1367899999999864
No 12
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=9.9e-19 Score=148.70 Aligned_cols=123 Identities=24% Similarity=0.336 Sum_probs=99.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCC----CCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeeh
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP----DETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSR 87 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp----~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r 87 (424)
+|.|+|++|+||++.+++++.||||+|++.+.. ..+.+|++.+ ++.||+||++|.|.+... ...|.++||...+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNPR-EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcCC-CCEEEEEEEECCC
Confidence 589999999999999999999999999997631 1356898876 589999999999999654 4578889886432
Q ss_pred hccccCCCccEEEEEechhhhcCCc-----eeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 88 ARNYMEDQLLGFALVPISQVVGNGK-----VVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlLa~G~-----~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
+..|++||.+.|+|.++...+. -..+||+|..+...++.+|.|+|+++|
T Consensus 79 ---~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 ---LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred ---CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 3368999999999999993322 145799998654457889999999998
No 13
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.79 E-value=6.9e-19 Score=148.66 Aligned_cols=105 Identities=21% Similarity=0.371 Sum_probs=89.5
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc---CCCceEEEEEEeeh
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL---DGAVLKCEIWMLSR 87 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~---~~~~Lk~EV~~~~r 87 (424)
|.|+|+|++|+||++.++++++||||+|++.+ ..++|++.+.++.||+||++|.|.+... ....|.++||....
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 89999999999999999999999999999965 5678999988899999999999999654 24578888887422
Q ss_pred hccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 88 ARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
+..|++||.+.|+|.+++..|. .+.||.|.-
T Consensus 78 ---~~~d~~iG~~~i~l~~l~~~~~-~~~~~~l~p 108 (124)
T cd04049 78 ---FSDDDFIGEATIHLKGLFEEGV-EPGTAELVP 108 (124)
T ss_pred ---CCCCCeEEEEEEEhHHhhhCCC-CcCceEeec
Confidence 3469999999999999997776 677887753
No 14
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.78 E-value=4.7e-18 Score=145.34 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=100.5
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhc
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRAR 89 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~ 89 (424)
.++|+|+|++|++|++.+++++.||||+|++.+ ++++|+|++ +..||+|||.|.|.+... ...|.++||...
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~---~~~kT~v~~-~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~--- 73 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG---ESVRSPVQK-DTLSPEFDTQAIFYRKKP-RSPIKIQVWNSN--- 73 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC---EEEEeCccC-CCCCCcccceEEEEecCC-CCEEEEEEEECC---
Confidence 578999999999999999999999999999876 578999976 679999999999998655 568999998743
Q ss_pred cccCCCccEEEEEechhhhcCCceeeeEEEc--cCCCCCCCCceEEEEEEEEecC
Q 037748 90 NYMEDQLLGFALVPISQVVGNGKVVTQDYNL--SSTDLFHSPAGTVKLSLSVNTP 142 (424)
Q Consensus 90 ~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L--ss~DlfgkPaG~V~LsLtf~~~ 142 (424)
.+.|++||.+.++|.++. +. ..++|+| +.+..+++..|+|.|++++...
T Consensus 74 -~~~d~~lG~~~~~l~~~~--~~-~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 74 -LLCDEFLGQATLSADPND--SQ-TLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred -CCCCCceEEEEEecccCC--Cc-CceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 346999999999998853 22 4477888 3334578999999999988753
No 15
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.78 E-value=2.9e-18 Score=142.38 Aligned_cols=115 Identities=23% Similarity=0.351 Sum_probs=96.6
Q ss_pred eEEEEEEeecCCCCCCCCC------CCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEE
Q 037748 11 GILEIFVHHARNIHNICIY------DNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWM 84 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~f------gKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~ 84 (424)
|+|.|+|++||+|++.+.+ ++.||||+|++.+ ...+|++.++ +.||+|||.|.|.+.......|.++||.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d 76 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIELFD 76 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEEEe
Confidence 7899999999999998753 6899999999965 6889999765 8999999999999965435688888876
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
... ..|++||.+.++|.++...|. ...||+|... .+|.|+|++.|
T Consensus 77 ~~~----~~~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 77 EDP----DKDDFLGRLSIDLGSVEKKGF-IDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred cCC----CCCCcEEEEEEEHHHhcccCc-cceEEECcCC-----CCceEEEEEeC
Confidence 422 278999999999999997666 7899999653 48999999864
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.78 E-value=3.3e-18 Score=143.70 Aligned_cols=122 Identities=23% Similarity=0.282 Sum_probs=99.3
Q ss_pred eEEEEEEeecCCCCCCCC--CCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehh
Q 037748 11 GILEIFVHHARNIHNICI--YDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRA 88 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~--fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~ 88 (424)
|+|.|+|++||||+..+. +++.||||+|.+.. .+.+|+++++ ..||+||+.|.|.+.......|.++||....
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA---QRFKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKDR- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC---EEEecceecC-CcCCccCCcEEEEecCCCCCEEEEEEEECCC-
Confidence 899999999999999998 99999999999854 6789999875 7999999999999975335689999986432
Q ss_pred ccccCCCccEEEEEechhhhcC--CceeeeEEEccCC--CCCCCCceEEEEEEEE
Q 037748 89 RNYMEDQLLGFALVPISQVVGN--GKVVTQDYNLSST--DLFHSPAGTVKLSLSV 139 (424)
Q Consensus 89 ~~~l~D~lIG~a~VPL~dlLa~--G~~~~~~f~Lss~--DlfgkPaG~V~LsLtf 139 (424)
...|++||.+.|+|.+++.. ......||+|... ......+|.|+|++++
T Consensus 76 --~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 --FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred --CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 33689999999999999832 2226789999653 2334579999999874
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=2.5e-18 Score=150.18 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=94.8
Q ss_pred EEEEEEeecCC---CCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehh
Q 037748 12 ILEIFVHHARN---IHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRA 88 (424)
Q Consensus 12 tLEVtV~SARD---LKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~ 88 (424)
.|+|+|++||+ |+..+..++.||||+|.+.+ ++.+|+|+.+ +.||+|||+|.|.+... ...|.++||..+..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~---~~~rTk~~~~-~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~ 75 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVED-SSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQS 75 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC---EEeEcCcccC-CCCCcceeEEEEEecCC-CCEEEEEEEECCCc
Confidence 48999999999 89999999999999999865 6889999975 78999999999999765 45788888875332
Q ss_pred ---ccccCCCccEEEEEechhhhcCCceeeeEEEccCCC-CCCCCceEEEE
Q 037748 89 ---RNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTD-LFHSPAGTVKL 135 (424)
Q Consensus 89 ---~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~D-lfgkPaG~V~L 135 (424)
.....|++||++.|||..+..... ...||+|...+ ...++.|.|++
T Consensus 76 ~~~~~~~~dd~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 76 HWKEAVQPDVLIGKVRIRLSTLEDDRV-YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccccCCCCceEEEEEEEHHHccCCCE-EeeEEEeEeCCCCCccCCcEEEe
Confidence 012379999999999999875444 78999998643 23456777764
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=4.2e-18 Score=152.65 Aligned_cols=122 Identities=21% Similarity=0.305 Sum_probs=97.4
Q ss_pred ceEEEEEEeecCCCCCCC------------------------------CCCCCcceEEEEEecCCCCceeeccccCCCCC
Q 037748 10 SGILEIFVHHARNIHNIC------------------------------IYDNQDVYAKFSLTYNPDETHSTQVINGGGKN 59 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn------------------------------~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrN 59 (424)
-|+|+|+|..|++|+|.+ ..++.||||+|+|.+. ...+|+|++++ .|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~--~~~rT~v~~~~-~n 82 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA--RVARTRVIENS-EN 82 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe--EeeEEEEeCCC-CC
Confidence 599999999999999976 3467899999999652 34699998764 99
Q ss_pred CccCceEEEEecccCCCceEEEEEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCC-CCCCceEEEEEEE
Q 037748 60 PEFNEKLIIKINQLDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDL-FHSPAGTVKLSLS 138 (424)
Q Consensus 60 PvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~Dl-fgkPaG~V~LsLt 138 (424)
|+|||.|.|.+... ...|.++||.. +.+++++||.+.|||.++...+. .+.||+|..... ..++.|.|+|++.
T Consensus 83 P~WnE~F~~~~~~~-~~~l~~~V~d~----d~~~~~~IG~~~i~l~~l~~g~~-~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 83 PVWNESFHIYCAHY-ASHVEFTVKDN----DVVGAQLIGRAYIPVEDLLSGEP-VEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred CccceEEEEEccCC-CCEEEEEEEeC----CCcCCcEEEEEEEEhHHccCCCC-cceEEECcCCCCCCCCCCCEEEEEEE
Confidence 99999999999655 56788887653 44578999999999999985443 789999976421 1245789999999
Q ss_pred Ee
Q 037748 139 VN 140 (424)
Q Consensus 139 f~ 140 (424)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
No 19
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.76 E-value=6.7e-18 Score=140.53 Aligned_cols=116 Identities=19% Similarity=0.321 Sum_probs=97.2
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
+|.|+|++||||+..+.+++.||||+|++.+ .+.+|++.++ ..||+|||+|.|.+.......|.++||+..+ +
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~---~ 73 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN---EKYKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDT---G 73 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC---EeEecccccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCC---C
Confidence 4789999999999999999999999999965 6788998764 8999999999999964335678999987432 3
Q ss_pred cCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 92 MEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
..|++||.+.++|.++...+. .+.||+|... +|.|+|.++|.+
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~-~~~w~~L~~~------~G~~~~~~~~~~ 116 (116)
T cd08376 74 KKDEFIGRCEIDLSALPREQT-HSLELELEDG------EGSLLLLLTLTG 116 (116)
T ss_pred CCCCeEEEEEEeHHHCCCCCc-eEEEEEccCC------CcEEEEEEEecC
Confidence 469999999999999875444 7889999653 699999999864
No 20
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.76 E-value=6.8e-18 Score=143.80 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=95.5
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|+|+|++||+|++.+++++.||||+|++.+ ...++|++++ +..||+|||+|.|.+.. ...|.++||....... -
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~-~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~-~ 75 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAK-KTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKK-K 75 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEc-CCCCCcccceEEEEeCC--CCEEEEEEEECCCCCC-C
Confidence 899999999999999999999999999954 4788999876 57899999999999964 4689999987432211 0
Q ss_pred CCCccEEEEEechhhhcCCceeeeEEEccC--CCCCCCCceEEEEEEE
Q 037748 93 EDQLLGFALVPISQVVGNGKVVTQDYNLSS--TDLFHSPAGTVKLSLS 138 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss--~DlfgkPaG~V~LsLt 138 (424)
.|++||.+.|+|.+++........||+|.. ++.+++..|.|.++|+
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEeC
Confidence 268999999999999943332457999944 3346677899998874
No 21
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=6.4e-18 Score=139.82 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=85.7
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|.|+|++||||+..+..++.||||+|++.+ ++++|++.+ ++.||+|||.|.|.|.......|.++||.. +.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~----~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKE-RTNNPVWEEGFTFLVRNPENQELEIEVKDD----KT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCcccc-CCCCCcccceEEEEeCCCCCCEEEEEEEEC----CC-
Confidence 899999999999999999999999999976 788999976 679999999999999764345788888763 21
Q ss_pred CCCccEEEEEechhhhcCC-ceeeeEEEccCC
Q 037748 93 EDQLLGFALVPISQVVGNG-KVVTQDYNLSST 123 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlLa~G-~~~~~~f~Lss~ 123 (424)
|++||++.|+|.+++..+ ....+||+|..+
T Consensus 73 -~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred -CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 889999999999999443 437889999754
No 22
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=1.9e-17 Score=141.04 Aligned_cols=120 Identities=16% Similarity=0.264 Sum_probs=97.4
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|-|+|++|+||+. .+++.||||++++.. +..+.+|+|.++ ..||+|||.|.|.+... ...|.++||.... ..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~---~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKN-TSNPFWDEHFLFELSPN-SKELLFEVYDNGK---KS 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEec-CCCCccCceEEEEeCCC-CCEEEEEEEECCC---CC
Confidence 5799999999998 789999999999953 345789999885 48999999999999543 4679999987533 33
Q ss_pred CCCccEEEEEechhhhcCCceeeeEEEccCCC-CCCCCceEEEEEEEEec
Q 037748 93 EDQLLGFALVPISQVVGNGKVVTQDYNLSSTD-LFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~D-lfgkPaG~V~LsLtf~~ 141 (424)
.|++||++.|||.+++..+. ...||+|.... ...+.+|.|+|++.|..
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPS-GRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred CCceEEEEEEeHHHhccCCc-eeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 69999999999999995554 56799997542 13567999999999975
No 23
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=1.8e-17 Score=142.19 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=93.2
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhc
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRAR 89 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~ 89 (424)
...|.|+|++||||+.. +..||||+|+|.+ ....+|++ + ++.||+|||.|.|.+...+-..+.+.||...
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~--~~~~kT~v-~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~--- 72 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNE--VKVARTKV-R-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKA--- 72 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECC--EeEEEeec-C-CCCCCccCCEEEEecCCCCcCEEEEEEEECC---
Confidence 46799999999999974 4789999999954 24467887 3 5799999999999874432245777776642
Q ss_pred cccCCCccEEEEEechhhhcCCceeeeEEEccCCCC-CCCCceEEEEEEEEec
Q 037748 90 NYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDL-FHSPAGTVKLSLSVNT 141 (424)
Q Consensus 90 ~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~Dl-fgkPaG~V~LsLtf~~ 141 (424)
....|++||.+.|||.++...+. .+.||+|..... ..+..|.|+|+|+|..
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~-~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQE-TDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCc-ccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 24469999999999999875444 788999976421 2356799999999985
No 24
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=2.2e-17 Score=139.29 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=97.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
.|.|+|++||+|+..++.++.||||+|++.+.+....+|++.++ ..||+|||+|.|.+.......|.++||...+ .
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~---~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSF---V 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCC---C
Confidence 58999999999999999999999999988654445679999865 5999999999999965324678999987532 2
Q ss_pred cCCCccEEEEEechhhh-cC-CceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 92 MEDQLLGFALVPISQVV-GN-GKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlL-a~-G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
..|++||++.++|.+++ .. |.....||+|.. +|.|+|.+++..
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~ 122 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEG 122 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEee
Confidence 36899999999999987 44 654678999953 699999999875
No 25
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.3e-17 Score=141.65 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=97.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
.|.|+|++||+|++.+++++.||||+|.+.+ ....+|+++++ ..||+|||.|.|.+... ...|.++||...+ +
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~--~~~~kT~v~~~-t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~---~ 73 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN--EVIIRTATVWK-TLNPFWGEEYTVHLPPG-FHTVSFYVLDEDT---L 73 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECC--EeeeeeeeEcC-CCCCcccceEEEeeCCC-CCEEEEEEEECCC---C
Confidence 3899999999999999999999999999954 23468999875 79999999999999643 4678888876432 3
Q ss_pred cCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEE
Q 037748 92 MEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLS 138 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLt 138 (424)
..|++||++.+++.++...+...+.||+|...+..++..|.|+|+++
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 46999999999999887433336789999765445677899999876
No 26
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2.2e-17 Score=141.41 Aligned_cols=119 Identities=14% Similarity=0.258 Sum_probs=96.8
Q ss_pred cceEEEEEEeecCCCCCCCCC----------CCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCce
Q 037748 9 FSGILEIFVHHARNIHNICIY----------DNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVL 78 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~f----------gKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~L 78 (424)
+.|+|.|+|+.|+||++.++. +..||||+|+|.+ +...+|++.+ ...||+|||+|.|.|.. ...|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~--~~~~kT~~~~-~t~~P~Wne~f~~~v~~--~~~l 76 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD--THIGKTSTKP-KTNSPVWNEEFTTEVHN--GRNL 76 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC--EEEeEEeEcC-CCCCCCcceeEEEEcCC--CCEE
Confidence 469999999999999998873 5799999999964 2346888866 58999999999999963 4678
Q ss_pred EEEEEEeehhccccCCCccEEEEEechhhhcC-CceeeeEEEccCCCCCCCCceEEEEEEEEecC
Q 037748 79 KCEIWMLSRARNYMEDQLLGFALVPISQVVGN-GKVVTQDYNLSSTDLFHSPAGTVKLSLSVNTP 142 (424)
Q Consensus 79 k~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~-G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~~ 142 (424)
.++||... .+..|++||.+.|+|.+++.. +.....||+|. |+|.|+|.+.|.+.
T Consensus 77 ~~~v~d~~---~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-------~~G~l~l~~~~~~~ 131 (132)
T cd04014 77 ELTVFHDA---AIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-------PQGKLHVKIELKGS 131 (132)
T ss_pred EEEEEeCC---CCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-------CCcEEEEEEEEecC
Confidence 88887532 233589999999999999942 44378899995 57999999999863
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2e-17 Score=141.52 Aligned_cols=116 Identities=23% Similarity=0.333 Sum_probs=95.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
.|.|+|++||||+.. +.||||+|++.. .+.+|+|++ +..||+|||+|.|.+.......|.++||...+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~---~~~kT~v~~-~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~---- 68 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN---YKGSTKAIE-RTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK---- 68 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC---ccccccccC-CCCCCccceEEEEEcCCCcCCEEEEEEEeCCC----
Confidence 489999999999988 899999999965 688999986 57899999999999976435679999987532
Q ss_pred cCCCccEEEEEechhhhcC----CceeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 92 MEDQLLGFALVPISQVVGN----GKVVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlLa~----G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
++|++||.+.|+|.++... +....+||+|..... .+-.|.|+|++.|.
T Consensus 69 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 69 AKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred CcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 3799999999999999832 222568999987642 57789999999985
No 28
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.8e-17 Score=139.62 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=96.9
Q ss_pred EeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc--CCCceEEEEEEeehhccccCC
Q 037748 17 VHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL--DGAVLKCEIWMLSRARNYMED 94 (424)
Q Consensus 17 V~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~--~~~~Lk~EV~~~~r~~~~l~D 94 (424)
|++||||++ ++++.||||+|++.+ .+++|++.+++ .||+|||+|.|.+... ....|.++||...+ ...|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~---~~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~---~~~d 72 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG---VKKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYEK---VGRN 72 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC---EeeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECCC---CCCC
Confidence 789999999 899999999999965 57899998755 8999999999999642 25678999987532 3468
Q ss_pred CccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEecCCCCC
Q 037748 95 QLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNTPLTLN 146 (424)
Q Consensus 95 ~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~~~p~~ 146 (424)
++||++.++|.+++..+. ...||+|..+. ....+|.|+|++.|.+..+..
T Consensus 73 ~~iG~~~~~l~~l~~~~~-~~~~~~L~~~~-~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 73 RLIGSATVSLQDLVSEGL-LEVTEPLLDSN-GRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred ceEEEEEEEhhHcccCCc-eEEEEeCcCCC-CCcccEEEEEEEEEeCCCCcc
Confidence 999999999999996555 78899997553 233589999999999765543
No 29
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=2.3e-17 Score=143.06 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=84.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEec--CCC--CceeeccccCCCCCCccCceEEEEeccc---CCCceEEEEEE
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTY--NPD--ETHSTQVINGGGKNPEFNEKLIIKINQL---DGAVLKCEIWM 84 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~--dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~---~~~~Lk~EV~~ 84 (424)
.|.|+|++||+|+... .|+.||||+|+|.+ .+. .+++|+|. +++.||+|||+|.|.|... ....|.+.||.
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~-~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSK-NNNWSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEe-cCCCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 3899999999999987 49999999999965 222 35678888 7999999999999999632 23457888876
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
..+ ...|++||++.|||.++...|. ...|++|...
T Consensus 79 ~d~---~~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~~~ 113 (120)
T cd08395 79 YCF---ARDDRLVGVTVLQLRDIAQAGS-CACWLPLGRR 113 (120)
T ss_pred ecc---cCCCCEEEEEEEEHHHCcCCCc-EEEEEECcCc
Confidence 322 2358999999999999996665 7889999653
No 30
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=3.5e-17 Score=135.77 Aligned_cols=114 Identities=26% Similarity=0.297 Sum_probs=95.0
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|+|+|++|++|++.++++++||||+|.+.+ ....+|++.. ++.||+||++|.|.+.......+.++||+... ..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~--~~~~~T~v~~-~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~---~~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIK-KTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR---GG 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC--Ccceeeceec-CCCCCcccccEEEEeccCCCCEEEEEEEeCCC---CC
Confidence 689999999999999999999999999954 3567899864 69999999999999965335779999987532 33
Q ss_pred CCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEE
Q 037748 93 EDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKL 135 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~L 135 (424)
.|++||++.++|.++..... ...|++|... .+..+|+|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~-~~~~~~L~~~--g~~~~~~~~~ 114 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPEET-TELTLPLDGQ--GGGKLGAVFL 114 (115)
T ss_pred CCCceEEEEEEHHHcCCCCc-EEEEEECcCC--CCccCceEEc
Confidence 69999999999999986444 7889999765 4788999876
No 31
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=152.53 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=95.0
Q ss_pred CCcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee
Q 037748 7 SEFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS 86 (424)
Q Consensus 7 ~~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~ 86 (424)
.++.|.|.|+|.+|.+|.--++.+++||||+|.++. ++++|+ ..++|.||+||+.|.|+|.++ ...|++.||..+
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~---q~lkT~-~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D 76 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN---QKLKTR-VVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKD 76 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECC---eeeeee-eecCCCCCcccceEEEEecCC-CceEEEEEEeCC
Confidence 467999999999999999999989999999999987 799999 556999999999999999887 678999998742
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEE
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLS 136 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~Ls 136 (424)
.+..|+++|+|.|||..++..++ .+| |....+-|..-|+|.++
T Consensus 77 ---~fs~dD~mG~A~I~l~p~~~~~~---~~~-l~~~~~~gt~~~~v~~s 119 (168)
T KOG1030|consen 77 ---TFSSDDFMGEATIPLKPLLEAQK---MDY-LKLELLTGTAIGKVLLS 119 (168)
T ss_pred ---CCCcccccceeeeccHHHHHHhh---hhc-cccccCCCcEeeEEEec
Confidence 25579999999999999995444 233 43332234445555544
No 32
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.72 E-value=2.9e-17 Score=137.43 Aligned_cols=103 Identities=20% Similarity=0.361 Sum_probs=85.3
Q ss_pred eEEEEEEeecCCCCCCCCC-CCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc---CCCceEEEEEEee
Q 037748 11 GILEIFVHHARNIHNICIY-DNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL---DGAVLKCEIWMLS 86 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~f-gKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~---~~~~Lk~EV~~~~ 86 (424)
|+|.|+|++|++|+..+.+ ++.||||+|++.+.....++|+++++ ..||+|||+|.|.+... ....|.++||...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 8999999999999999999 99999999999765556789999875 69999999999988532 2457899998753
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEcc
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLS 121 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls 121 (424)
+ +..|++||++.++|.+|++.+ +|++++
T Consensus 80 ~---~~~dd~lG~~~i~l~~l~~~~----~~~~~~ 107 (111)
T cd04041 80 R---FTADDRLGRVEIDLKELIEDR----NWMGRR 107 (111)
T ss_pred C---CCCCCcceEEEEEHHHHhcCC----CCCccc
Confidence 2 446999999999999998554 366664
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.71 E-value=5.4e-17 Score=139.07 Aligned_cols=105 Identities=28% Similarity=0.455 Sum_probs=87.2
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEe-c--ccCCCceEEEEEE
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKI-N--QLDGAVLKCEIWM 84 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V-~--~~~~~~Lk~EV~~ 84 (424)
.|.|.|+|++||||...+ .++.||||+|+|..++ ..+++|+++++ ..||+|||+|.|.+ . ......|.++||.
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 589999999999999999 8899999999998764 34789999875 59999999999997 3 3335678899987
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
..+ +..|++||++.|||.++...+. ...||+|
T Consensus 90 ~d~---~~~~~~lG~~~i~l~~l~~~~~-~~~W~~L 121 (122)
T cd08381 90 HDS---LVENEFLGGVCIPLKKLDLSQE-TEKWYPL 121 (122)
T ss_pred CCC---CcCCcEEEEEEEeccccccCCC-ccceEEC
Confidence 432 4469999999999999984443 6789987
No 34
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=8.8e-17 Score=137.38 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=88.2
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcc
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARN 90 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~ 90 (424)
|.|.|+|++|+||++.++++++||||+|++.+ ....+|++. .++.||+||+.|.|.+... ...|+++||...+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~--~~~~kT~~~-~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~--- 73 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG--IVKGRTVTI-SNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEK--- 73 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC--EEeeceeEE-CCCcCCccCceEEEEecCC-CCEEEEEEEECCC---
Confidence 89999999999999999999999999999954 356788885 5689999999999999765 5689999987432
Q ss_pred ccCCCccEEEEEechhhhcCCceeeeEEEccCCC
Q 037748 91 YMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTD 124 (424)
Q Consensus 91 ~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~D 124 (424)
...|++||++.++|.+++.. . .+.||.|...+
T Consensus 74 ~~~d~~IG~~~~~l~~l~~~-~-~~~~~~~~~~~ 105 (120)
T cd04045 74 VGKDRSLGSVEINVSDLIKK-N-EDGKYVEYDDE 105 (120)
T ss_pred CCCCCeeeEEEEeHHHhhCC-C-CCceEEecCCC
Confidence 34589999999999999954 3 57899887653
No 35
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.70 E-value=1.5e-16 Score=134.18 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=94.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
.|.|+|++||||+..++.++.||||+|++.+ .+.+|++.++ ..||+|||+|.|.+.......|.++||... .+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~---~~ 73 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG---QTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWD---LV 73 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC---EEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECC---CC
Confidence 3899999999999999999999999999965 5678999875 689999999999996542467899998742 23
Q ss_pred cCCCccEEEEEechhhhcCCceeeeEEEccC----CCCCCCCceEEEEEE
Q 037748 92 MEDQLLGFALVPISQVVGNGKVVTQDYNLSS----TDLFHSPAGTVKLSL 137 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss----~DlfgkPaG~V~LsL 137 (424)
..|++||.+.++|.++...+. ...||.|.. +...++.+|.|+|.+
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQ-EEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCC-CCCEEECCCCCCCCccccCceEEEEEEe
Confidence 458999999999999985444 678998864 112456789998864
No 36
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.70 E-value=2.6e-16 Score=134.71 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=96.6
Q ss_pred EEEEEeecCCCCCCC-CCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 13 LEIFVHHARNIHNIC-IYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 13 LEVtV~SARDLKNVn-~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
|.|+|+.||||+..+ ..+..||||+|.+.+ +...+|++.+ +..||+|||.|.|.|... ...|.+.||+..+ +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~--~~~~kT~v~~-kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~---~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ--EEVFRTKTVE-KSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDV---L 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC--ccEEEeeEEE-CCCCCccCCeEEEEcCCC-CCEEEEEEEECCC---C
Confidence 789999999999874 347899999999943 3467899865 489999999999999743 4678888887533 4
Q ss_pred cCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 92 MEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
..|++||.+.++|.++...+. .+.||+|......++.+|.|+|++.|
T Consensus 75 ~~~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKYYG-KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCCceEEEEEEEHHHccCCCC-cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 469999999999999886555 78899998755556779999999875
No 37
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.70 E-value=1.4e-16 Score=133.27 Aligned_cols=107 Identities=24% Similarity=0.380 Sum_probs=86.8
Q ss_pred cceEEEEEEeecCCCCCCC-CCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEE
Q 037748 9 FSGILEIFVHHARNIHNIC-IYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIW 83 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn-~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~ 83 (424)
..|.|.|+|++||||+..+ ..++.||||+|++.++.. .+.+|++. +++.||+|||+|.|.+.. .....|.++||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVK-KNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeecccc-CCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 4689999999999999999 788999999999965432 57889985 579999999999999963 22457899998
Q ss_pred EeehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
...+ +..+++||++.++|.++.-.+. .+.||+|
T Consensus 91 d~~~---~~~~~~iG~~~i~l~~l~~~~~-~~~w~~l 123 (123)
T cd08521 91 HHDR---FGRNTFLGEVEIPLDSWDLDSQ-QSEWYPL 123 (123)
T ss_pred eCCC---CcCCceeeEEEEecccccccCC-CccEEEC
Confidence 7432 3468999999999999963333 7789987
No 38
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.70 E-value=3.1e-16 Score=138.71 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=96.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC----------CceeeccccCCCCCCcc-CceEEEEecccCCCceEE
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD----------ETHSTQVINGGGKNPEF-NEKLIIKINQLDGAVLKC 80 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~----------~k~sT~Vdk~GGrNPvW-NetlrF~V~~~~~~~Lk~ 80 (424)
+..|++++||||+ .++|++.||||+|++..... ++++|++++ +..||+| ||+|.|.+... ..|.+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~--~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT--DVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCCC--CEEEE
Confidence 3578999999999 78999999999999975432 478999886 5689999 99999999643 47899
Q ss_pred EEEEeehhccccCCCccEEEEEechhhhc--CCceeeeEEEccCCCCCCCCceEEEEEE
Q 037748 81 EIWMLSRARNYMEDQLLGFALVPISQVVG--NGKVVTQDYNLSSTDLFHSPAGTVKLSL 137 (424)
Q Consensus 81 EV~~~~r~~~~l~D~lIG~a~VPL~dlLa--~G~~~~~~f~Lss~DlfgkPaG~V~LsL 137 (424)
+||......+..+|++||.+.|||.+++. .+.....||+|.++-.+.+-+|.|.|.+
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99874322223348999999999999993 3443678999988666788899988764
No 39
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.70 E-value=4.9e-16 Score=130.23 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=95.5
Q ss_pred EEEEEEeecCCCCCCC--CCCCCcceEEEEEecCC---CCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee
Q 037748 12 ILEIFVHHARNIHNIC--IYDNQDVYAKFSLTYNP---DETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS 86 (424)
Q Consensus 12 tLEVtV~SARDLKNVn--~fgKqDpYAvvsIs~dp---~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~ 86 (424)
.|+|+|++|++|++.+ .+++.||||+|++.+.+ ..+.+|+++.+.+.||+|||+|.|.+.......|+++||+..
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999999999998 68999999999997653 468999999999999999999999997542346888888753
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCC--CceEEEEEEEE
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHS--PAGTVKLSLSV 139 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~Dlfgk--PaG~V~LsLtf 139 (424)
+ . .|++||.+.++|.++ ..|. ++++|..+ .++ ..|.|.+.+.+
T Consensus 83 ~---~-~~~~iG~~~~~l~~l-~~g~---~~~~l~~~--~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S---G-DDDFLGQACLPLDSL-RQGY---RHVPLLDS--KGEPLELSTLFVHIDI 127 (128)
T ss_pred C---C-CCcEeEEEEEEhHHh-cCce---EEEEecCC--CCCCCcceeEEEEEEE
Confidence 3 2 789999999999998 3343 68999765 343 46787777665
No 40
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.69 E-value=1.5e-16 Score=134.20 Aligned_cols=108 Identities=24% Similarity=0.319 Sum_probs=89.2
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEEee
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWMLS 86 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~~~ 86 (424)
..|.|.|+|++||||+..++.++.||||+|.+.++...+++|++.+ +..||+|||+|.|.+.. .....|.++||...
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 4689999999999999999999999999999976555678999875 67999999999999953 22457899998753
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEcc
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLS 121 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls 121 (424)
+ +..|++||++.|||.++.. |.....||+|-
T Consensus 93 ~---~~~~~~lG~~~i~l~~~~~-~~~~~~W~~l~ 123 (124)
T cd08385 93 R---FSKHDLIGEVRVPLLTVDL-GHVTEEWRDLE 123 (124)
T ss_pred C---CCCCceeEEEEEecCcccC-CCCcceEEEcc
Confidence 2 4468999999999999864 33367899884
No 41
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=1.4e-16 Score=140.73 Aligned_cols=100 Identities=20% Similarity=0.350 Sum_probs=82.5
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhc
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRAR 89 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~ 89 (424)
.|.|.|+|++||+|++...+ ||||+|.+++ ++.+|++.++ .||+|||.|.|.+... ...|.++||..
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~---dPYV~Ik~g~---~k~kT~v~~~--~nP~WnE~F~F~~~~~-~~~L~v~V~dk---- 67 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKF---NTYVTLKVQN---VKSTTIAVRG--SQPCWEQDFMFEINRL-DLGLVIELWNK---- 67 (127)
T ss_pred CceEEEEEEEeeCCCCCCCC---CCeEEEEECC---EEeEeeECCC--CCCceeeEEEEEEcCC-CCEEEEEEEeC----
Confidence 47899999999999998866 7999999965 5777777754 6999999999999766 45599999874
Q ss_pred cccCCCccEEEEEechhhhcCCce-eeeEEEccC
Q 037748 90 NYMEDQLLGFALVPISQVVGNGKV-VTQDYNLSS 122 (424)
Q Consensus 90 ~~l~D~lIG~a~VPL~dlLa~G~~-~~~~f~Lss 122 (424)
+.+.|++||++.|||.+++..... ..+||+|..
T Consensus 68 d~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 68 GLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred CCcCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 456899999999999999944432 367999964
No 42
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.69 E-value=2.7e-16 Score=132.83 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=90.6
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEEee
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWMLS 86 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~~~ 86 (424)
..|.|.|+|++|+||+..++.++.||||+|.+..+....++|++.+ +..||+|||+|.|.|.. .....|.++||...
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 4689999999999999999999999999999965545678999876 57999999999999953 22457999998742
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
+ +..|++||++.|+|.++...+. .+.||+|.+
T Consensus 93 ~---~~~~~~iG~~~i~l~~~~~~~~-~~~W~~l~~ 124 (124)
T cd08387 93 Q---FSRDECIGVVELPLAEVDLSEK-LDLWRKIQS 124 (124)
T ss_pred C---CCCCceeEEEEEecccccCCCC-cceEEECcC
Confidence 2 4469999999999999985554 788999864
No 43
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.67 E-value=4.7e-16 Score=133.76 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=87.9
Q ss_pred CcceEEEEEEeecCCCCCCCC-CCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEecc--cCCCceEEEE
Q 037748 8 EFSGILEIFVHHARNIHNICI-YDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEI 82 (424)
Q Consensus 8 ~~~GtLEVtV~SARDLKNVn~-fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV 82 (424)
...|.|.|+|++||||+.... .++.||||+|++..+. ..+++|++.+ +..||+|||+|.|.|.. ..+..|.++|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 357899999999999998754 6899999999997654 3578999865 68999999999999953 3356789999
Q ss_pred EEeehhccccCCCccEEEEEechhhhcCCceeeeEEEcc
Q 037748 83 WMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLS 121 (424)
Q Consensus 83 ~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls 121 (424)
|...+ +..+++||++.|+|.++--.+. ...||+|.
T Consensus 91 ~d~~~---~~~~~~lG~~~i~l~~~~~~~~-~~~w~~l~ 125 (125)
T cd04029 91 WHYDR---FGRNTFLGEVEIPLDSWNFDSQ-HEECLPLH 125 (125)
T ss_pred EECCC---CCCCcEEEEEEEeCCcccccCC-cccEEECc
Confidence 87432 4468999999999999974444 77899983
No 44
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=8.1e-16 Score=131.71 Aligned_cols=118 Identities=19% Similarity=0.328 Sum_probs=95.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehh---
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRA--- 88 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~--- 88 (424)
.|.|+|++|++|++.+++++.||||+|.+.. .+++|++.+ ...||+|||.|.|.+... ...|.++||.....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~v~-~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK---TKKRTKTIP-QNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKS 76 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC---Eeeecceec-CCCCCccceEEEEEecCC-CCEEEEEEEECCCCccc
Confidence 6899999999999999999999999999854 578899876 479999999999998644 45799999875421
Q ss_pred ---ccc--cCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEE
Q 037748 89 ---RNY--MEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSL 137 (424)
Q Consensus 89 ---~~~--l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsL 137 (424)
+++ ..|++||.+.++|.++- +. ...||.|..+..+...+|.|.|++
T Consensus 77 ~~~~~~~~~~~~~iG~~~i~l~~~~--~~-~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 77 RLKQKFTRESDDFLGQTIIEVRTLS--GE-MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccceeccccCCCcceEEEEEhHHcc--CC-CCeEEECccCCCCCcEeEEEEEEC
Confidence 011 25999999999999973 33 568999987655677899999874
No 45
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.67 E-value=1e-15 Score=126.78 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=83.7
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccC--CCceEEEEEEeehhcc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLD--GAVLKCEIWMLSRARN 90 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~--~~~Lk~EV~~~~r~~~ 90 (424)
|.|+|++||||+.. ++.||||+|++.+ ....+|++.++ .||+|||+|.|.+.... ...|.+.+|.. +
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~--~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~----~ 70 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDK----R 70 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC--EEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEec----c
Confidence 88999999999987 8999999999964 34578999876 99999999999996431 23445555442 2
Q ss_pred ccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 91 YMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 91 ~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
.. +..+|.+.|+|..+.- |.....||+|...+..+...|.|+|++.|
T Consensus 71 ~~-~~~~~~g~v~l~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 71 SK-DRDIVIGKVALSKLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred cC-CCeeEEEEEEecCcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 22 3445666677766554 33378899997654334568999999987
No 46
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.66 E-value=5.6e-16 Score=134.62 Aligned_cols=108 Identities=24% Similarity=0.299 Sum_probs=88.4
Q ss_pred cceEEEEEEeecCCCCCCCCC-CCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIY-DNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIW 83 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~f-gKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~ 83 (424)
..+.|.|+|++||||...+.. +..||||+|+|..+. ..+++|++.+ +-.||+|||+|.|.|. +.....|.+.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 358999999999999999875 999999999997654 3477899885 6899999999999995 333568889998
Q ss_pred EeehhccccCCCccEEEEEechhhh-cC-CceeeeEEEc
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVV-GN-GKVVTQDYNL 120 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlL-a~-G~~~~~~f~L 120 (424)
...+ +..+++||++.|||.++- .+ +....+||+|
T Consensus 92 ~~~~---~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 92 HSRT---LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred eCCC---CcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 7432 457999999999999995 44 4447789998
No 47
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.66 E-value=5.5e-16 Score=130.65 Aligned_cols=109 Identities=25% Similarity=0.262 Sum_probs=87.5
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWM 84 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~ 84 (424)
..|.|.|+|++||||+..+.+++.||||+|.+..+. ..+++|++.++ ..||+|||+|.|.+.. .....|.+.||.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 368999999999999999999999999999997643 46889999875 5799999999999952 324577888876
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
....- ...|++||++.|+|.++...+. ...||+|
T Consensus 93 ~~~~~-~~~~~~iG~~~i~l~~l~~~~~-~~~W~~L 126 (127)
T cd04030 93 SKSFL-SREKKLLGQVLIDLSDLDLSKG-FTQWYDL 126 (127)
T ss_pred CCccc-CCCCceEEEEEEecccccccCC-ccceEEC
Confidence 42210 1369999999999999865444 7789988
No 48
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=4.2e-16 Score=133.43 Aligned_cols=106 Identities=23% Similarity=0.343 Sum_probs=84.4
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccC-CCceEEEEEEee
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLD-GAVLKCEIWMLS 86 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~-~~~Lk~EV~~~~ 86 (424)
.|.|.|+|+.||||+... .++.||||+|+|..++. .+++|++.+ +..||+|||+|.|.|...+ ...|.+.||...
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVP-DSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCcccc-CCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 589999999999999998 88999999999987543 366899885 5789999999999995321 345778887642
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
+ ...++++||++.|||.+++ .|.....||.|
T Consensus 89 ~--~~~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 89 S--KSRDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred C--CcCCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 2 1225789999999999998 34437889986
No 49
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.65 E-value=1.6e-15 Score=129.98 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=93.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
.|.|+|++|+ |.+.+.++++||||+|++.+. ...+|++.+ ++.||+||+.|.|.+.. ...|.++||.... .
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~-~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~---~ 73 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSK-KTSNPKWNEHFTVLVTP--QSTLEFKVWSHHT---L 73 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeC-CCCCCccccEEEEEeCC--CCEEEEEEEeCCC---C
Confidence 6999999999 666667999999999999652 478999876 78999999999999864 4679999987533 3
Q ss_pred cCCCccEEEEEechhhh--cCCce--eeeEEEccCCCC-CCCCceEEEEEE
Q 037748 92 MEDQLLGFALVPISQVV--GNGKV--VTQDYNLSSTDL-FHSPAGTVKLSL 137 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlL--a~G~~--~~~~f~Lss~Dl-fgkPaG~V~LsL 137 (424)
..|++||++.++|.+++ ..|.. ...|++|.++.. .++-+|.|.+++
T Consensus 74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 46999999999999999 34442 234899987532 447799999876
No 50
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.2e-15 Score=131.90 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=94.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc---------CCCceEEEE
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL---------DGAVLKCEI 82 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~---------~~~~Lk~EV 82 (424)
.|.|+|++||+|...+.+++.||||+|.+.+ .+++|++.+ +..||+|||.|.|.+... ....+.++|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN---QSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC---eeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 4899999999999999999999999999965 688999986 579999999999986321 124588899
Q ss_pred EEeehhccccCCCccEEEEE-echhhhc--CCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 83 WMLSRARNYMEDQLLGFALV-PISQVVG--NGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 83 ~~~~r~~~~l~D~lIG~a~V-PL~dlLa--~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
|...+ ...|++||++.+ |+..+.. .+....+||+|.++ +..+|.|.|++.+..
T Consensus 78 ~d~d~---~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~~~~Geil~~~~~~~ 133 (135)
T cd04017 78 FDQDS---VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---GQSAGELLAAFELIE 133 (135)
T ss_pred EeCcC---CCCCccceEEEeeeeeecccCCCCCCCceEEEeecC---CCchhheeEEeEEEE
Confidence 87433 345899999986 6655543 23336689999865 567999999998864
No 51
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=6.6e-16 Score=130.41 Aligned_cols=91 Identities=11% Similarity=0.208 Sum_probs=76.3
Q ss_pred eEEEEEEeecCCCCCCCCCC----CCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc-CCCceEEEEEEe
Q 037748 11 GILEIFVHHARNIHNICIYD----NQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL-DGAVLKCEIWML 85 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fg----KqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~-~~~~Lk~EV~~~ 85 (424)
|+|.|+|++||+|+..+.+. +.||||+|++.. .+++|+|+++ ..||+|||.|.|.|... ....|.++||+.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~---~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~ 76 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR---RVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDK 76 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC---EeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEEC
Confidence 89999999999999988764 489999999954 5789999986 59999999999999532 134688899875
Q ss_pred ehhccccCCCccEEEEEechhhh
Q 037748 86 SRARNYMEDQLLGFALVPISQVV 108 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlL 108 (424)
++ ...|++||++.++|.+|+
T Consensus 77 d~---~~~dd~IG~~~l~L~~l~ 96 (108)
T cd04039 77 DK---FSFNDYVATGSLSVQELL 96 (108)
T ss_pred CC---CCCCcceEEEEEEHHHHH
Confidence 33 346999999999999999
No 52
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.65 E-value=1e-15 Score=131.26 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=86.8
Q ss_pred cceEEEEEEeecCCCCCCCCC-CCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIY-DNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIW 83 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~f-gKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~ 83 (424)
..|.|.|+|++||||...+.. +..||||+|++..++ ..+++|+|++ +..||+|||+|.|.|. ...+..|.++||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK-KTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-CCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 358899999999999999986 899999999997654 3568999886 4599999999999995 333567999998
Q ss_pred EeehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
...+ +..+++||++.|||.++--.+. ...||+|
T Consensus 92 d~~~---~~~~~~iG~~~i~L~~~~~~~~-~~~W~~L 124 (125)
T cd08393 92 HRDS---LGRNSFLGEVEVDLGSWDWSNT-QPTWYPL 124 (125)
T ss_pred eCCC---CCCCcEeEEEEEecCccccCCC-CcceEEC
Confidence 7432 4468999999999999952222 5679987
No 53
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=9.8e-16 Score=131.41 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=88.2
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEE-ec--ccCCCceEEEEEEe
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIK-IN--QLDGAVLKCEIWML 85 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~-V~--~~~~~~Lk~EV~~~ 85 (424)
..+.|.|+|++||||...+.-+..|||+++.+-.+...+++|+|++ + .||+|||+|.|. +. +..+..|.+.||..
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 4578999999999999999888999999998876666789999976 4 999999999999 64 33356789999875
Q ss_pred ehhccccCCCccEEEEEechhhhcCCceeeeEEEcc
Q 037748 86 SRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLS 121 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls 121 (424)
.+ +..+++||++.|||.++-..+. ...||+|.
T Consensus 92 ~~---~~~~~~lG~~~i~L~~l~~~~~-~~~w~~L~ 123 (124)
T cd08389 92 ER---MRKERLIGEKVVPLSQLNLEGE-TTVWLTLE 123 (124)
T ss_pred CC---cccCceEEEEEEeccccCCCCC-ceEEEeCC
Confidence 32 4469999999999999964333 77899884
No 54
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=1.3e-15 Score=136.63 Aligned_cols=109 Identities=19% Similarity=0.246 Sum_probs=88.1
Q ss_pred ceEEEEEEeecCCCCCCC-CCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee
Q 037748 10 SGILEIFVHHARNIHNIC-IYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS 86 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn-~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~ 86 (424)
.|.|.|+|++||||.... ..++.||||+++|-.+.+ .+++|+|. .+..||+|||+|.|.|. ..+..|.++||..
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~-kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d- 104 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIA-RKTLDPLYQQQLVFDVS-PTGKTLQVIVWGD- 104 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceec-CCCCCCccCCeEEEEEc-CCCCEEEEEEEeC-
Confidence 589999999999999864 578999999999976543 48899988 58899999999999998 4467899999852
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
..++..+++||++.|+|.++-- +.....||+|...
T Consensus 105 -~~~~~~~~~iG~~~i~L~~l~~-~~~~~~Wy~L~~~ 139 (146)
T cd04028 105 -YGRMDKKVFMGVAQILLDDLDL-SNLVIGWYKLFPT 139 (146)
T ss_pred -CCCCCCCceEEEEEEEcccccC-CCCceeEEecCCc
Confidence 1123468999999999999732 2236789999753
No 55
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=6.9e-16 Score=128.92 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=84.0
Q ss_pred EEEEEeecCCCCCCCC-CCCCcceEEEEEecCCCCceeeccccCCCCCCcc-CceEEEEeccc--CCCceEEEEEEeehh
Q 037748 13 LEIFVHHARNIHNICI-YDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEF-NEKLIIKINQL--DGAVLKCEIWMLSRA 88 (424)
Q Consensus 13 LEVtV~SARDLKNVn~-fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvW-NetlrF~V~~~--~~~~Lk~EV~~~~r~ 88 (424)
|+|+|++||+|++.+. .+..||||+|++.+ .+.+|++++ +..||+| ||+|.|.|... .+..|.++||...+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~- 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVK-KSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT- 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceec-CCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-
Confidence 7899999999999884 68999999999965 788999997 5699999 99999999642 24679999987432
Q ss_pred ccccCCCccEEEEEechhhhcC--CceeeeEEEcc
Q 037748 89 RNYMEDQLLGFALVPISQVVGN--GKVVTQDYNLS 121 (424)
Q Consensus 89 ~~~l~D~lIG~a~VPL~dlLa~--G~~~~~~f~Ls 121 (424)
+..|++||++.++|.+++.. +...+.||+|-
T Consensus 76 --~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 76 --YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred --CCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 33589999999999999964 33378899984
No 56
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.1e-15 Score=128.24 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=82.7
Q ss_pred CCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccccCCCccEEEEEech
Q 037748 26 ICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYMEDQLLGFALVPIS 105 (424)
Q Consensus 26 Vn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~ 105 (424)
-.+.|++||||+|.+.+ +...+|++++ ++.||+|||.|.|.|.......|.++||... .+ .|++||.+.|||.
T Consensus 7 ~~~~G~~dPYv~v~v~~--~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~~-~d~~iG~~~v~L~ 79 (111)
T cd04052 7 ESKTGLLSPYAELYLNG--KLVYTTRVKK-KTNNPSWNASTEFLVTDRRKSRVTVVVKDDR---DR-HDPVLGSVSISLN 79 (111)
T ss_pred cccCCCCCceEEEEECC--EEEEEEeeec-cCCCCccCCceEEEecCcCCCEEEEEEEECC---CC-CCCeEEEEEecHH
Confidence 34568999999999954 2457889865 4899999999999997543456888886632 23 7999999999999
Q ss_pred hhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 106 QVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 106 dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
+++..+.....||+|.. +++|.|+|++.|.+
T Consensus 80 ~l~~~~~~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCC-----CCCCEEEEEEEEec
Confidence 99954443678999963 56899999999986
No 57
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=1.4e-15 Score=131.35 Aligned_cols=107 Identities=19% Similarity=0.334 Sum_probs=86.7
Q ss_pred ceEEEEEEeecCCCCCCCCC-CCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEE-Eec--ccCCCceEEEEEEe
Q 037748 10 SGILEIFVHHARNIHNICIY-DNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLII-KIN--QLDGAVLKCEIWML 85 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~f-gKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF-~V~--~~~~~~Lk~EV~~~ 85 (424)
.+.|.|+|++||||+..+.. ++.||||+|+|..+.+.+.+|+++++ +.||+|||+|.| .+. +.....|.++||..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 57999999999999999988 89999999999766566789999875 799999999999 454 33245688888875
Q ss_pred ehhccccCCCccEEEEEechhhh-c-CCceeeeEEEcc
Q 037748 86 SRARNYMEDQLLGFALVPISQVV-G-NGKVVTQDYNLS 121 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlL-a-~G~~~~~~f~Ls 121 (424)
. ++..|++||++.|||.++- . +|. ...|.+|.
T Consensus 94 d---~~~~d~~lG~~~i~L~~l~~~~~~~-~~~~~~~~ 127 (128)
T cd08388 94 D---RYSRDDVIGEVVCPLAGADLLNEGE-LLVSREIQ 127 (128)
T ss_pred C---CCCCCceeEEEEEeccccCCCCCce-EEEEEecc
Confidence 3 2446999999999999996 3 444 77787763
No 58
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.63 E-value=1.2e-15 Score=132.66 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=88.0
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC---CCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP---DETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIW 83 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp---~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~ 83 (424)
..|.|.|+|++||||+..+.-+.-|||++++|-.+. ..+++|+|.++ ..||+|||+|.|.|. +..+..|.+.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 357899999999999999877789999999998765 35899998875 899999999999995 344678999998
Q ss_pred EeehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
...+ +..+++||.+.|+|.++-..+....+||.|
T Consensus 91 ~~~~---~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGP---DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCC---CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 8533 345899999999999994222226789876
No 59
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.63 E-value=3.1e-15 Score=125.43 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=88.1
Q ss_pred CcceEEEEEEeecCCCCCCC-CCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc--CCCceEEEEEE
Q 037748 8 EFSGILEIFVHHARNIHNIC-IYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL--DGAVLKCEIWM 84 (424)
Q Consensus 8 ~~~GtLEVtV~SARDLKNVn-~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~--~~~~Lk~EV~~ 84 (424)
...|.|.|+|++|++|+..+ .+++.||||+|.+..+.....+|++.+ ++.||+|||+|.|.+... ....|.++||.
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~-~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKR-KTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEc-CCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 35789999999999999998 789999999999865445567887765 589999999999999532 23578999987
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEcc
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLS 121 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls 121 (424)
... ...|.+||++.|+|.++...+. ...|++|.
T Consensus 90 ~~~---~~~~~~iG~~~i~L~~l~~~~~-~~~w~~L~ 122 (123)
T cd08390 90 VDR---FSRHCIIGHVLFPLKDLDLVKG-GVVWRDLE 122 (123)
T ss_pred CCc---CCCCcEEEEEEEeccceecCCC-ceEEEeCC
Confidence 432 3468999999999999986555 66899873
No 60
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=2.3e-15 Score=126.79 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=87.2
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEec---ccCCCceEEEEEEe
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKIN---QLDGAVLKCEIWML 85 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~---~~~~~~Lk~EV~~~ 85 (424)
..+.|.|+|++|+||+..+..++.||||+|.+..+...+.+|+|.+ +..||+|||+|.|.+. ......|.++||..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 4689999999999999999999999999999965555678999976 5799999999999852 22235688899874
Q ss_pred ehhccccCCCccEEEEEechhhhcCCceeeeEEEcc
Q 037748 86 SRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLS 121 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls 121 (424)
.+ +..|++||++.|+|.++.. +.....||.|.
T Consensus 93 d~---~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l~ 124 (125)
T cd08386 93 DR---FSRNDPIGEVSLPLNKVDL-TEEQTFWKDLK 124 (125)
T ss_pred CC---CcCCcEeeEEEEecccccC-CCCcceEEecC
Confidence 32 3468999999999999874 33367899884
No 61
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.63 E-value=2.4e-15 Score=126.21 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=85.7
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEecc---cCCCceEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQ---LDGAVLKCEIW 83 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~---~~~~~Lk~EV~ 83 (424)
..|.|.|+|++||||+..+..++.||||+|++.++. ..+++|++++ +..||+|||+|.|.+.. .....|.++||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 458899999999999999999999999999997643 3577899876 57999999999999632 22467899998
Q ss_pred EeehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
...+ ...|++||.+.++|.+.+..+. ..||+|
T Consensus 93 d~~~---~~~~~~iG~~~i~l~~~~~~~~--~~W~~L 124 (125)
T cd04031 93 DYDR---DGENDFLGEVVIDLADALLDDE--PHWYPL 124 (125)
T ss_pred eCCC---CCCCcEeeEEEEecccccccCC--cceEEC
Confidence 7533 3468999999999999544443 479988
No 62
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.61 E-value=4.5e-15 Score=133.88 Aligned_cols=104 Identities=19% Similarity=0.323 Sum_probs=85.5
Q ss_pred CCcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--------------------------CCceeeccccCCCCCC
Q 037748 7 SEFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--------------------------DETHSTQVINGGGKNP 60 (424)
Q Consensus 7 ~~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--------------------------~~k~sT~Vdk~GGrNP 60 (424)
+..++.|.|+|++||||++.+.+++.||||+|.+.... ...++|++.+ ++.||
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP 102 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNP 102 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCC
Confidence 34689999999999999999999999999999985321 1236787765 58999
Q ss_pred ccCceEEEEecccCCCceEEEEEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 61 EFNEKLIIKINQLDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 61 vWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
+|||+|.|.+.......|.++||... |++||++.+||.++.+.| .+.||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~~~--~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD-------DDFLGCVNIPLKDLPSCG--LDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC-------CCeEEEEEEEHHHhCCCC--CCCeEeC
Confidence 99999999997643567899998642 899999999999998433 6789987
No 63
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=3.8e-15 Score=133.31 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=81.8
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEec---------------ccCC
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKIN---------------QLDG 75 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~---------------~~~~ 75 (424)
|.|+|++||||.. ..+..||||+|.|.+.. ..+++|+|++ +..||+|||+|.|.|. +...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 8999999999998 56899999999998743 2578899887 5899999999999994 1112
Q ss_pred CceEEEEEEeehhccccCCCccEEEEEechhhhcC-CceeeeEEEccC
Q 037748 76 AVLKCEIWMLSRARNYMEDQLLGFALVPISQVVGN-GKVVTQDYNLSS 122 (424)
Q Consensus 76 ~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~-G~~~~~~f~Lss 122 (424)
..|.++||...+ +..|++||++.|||.++... +. ...||+|..
T Consensus 79 ~~L~i~V~d~~~---~~~ddfLG~v~i~l~~l~~~~~~-~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASM---GGGDVFLGEVRIPLRGLDLQAGS-HQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCC---CCCCceeEEEEEecccccccCCc-CcceeecCC
Confidence 457777776432 33699999999999998854 44 678999954
No 64
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=4.5e-15 Score=133.49 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=85.4
Q ss_pred EEEEEEeecCCCCCCCCCC--------------CCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc-CCC
Q 037748 12 ILEIFVHHARNIHNICIYD--------------NQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL-DGA 76 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fg--------------KqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~-~~~ 76 (424)
+|.|+|++||||+..+..+ ..||||+|++.+ .+.+|++++ ...||+|||+|.|++... .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g---~~~kT~v~~-~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG---QKVKTSVKK-NSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC---EeeecceEc-CCCCCCcceEEEEEeeCCCcCC
Confidence 4899999999999988554 689999999976 577999987 579999999999998432 145
Q ss_pred ceEEEEEEeehhccccCCCccEEEEEechhhhcCCce------eeeEEEccCCCCCCCCceEE
Q 037748 77 VLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKV------VTQDYNLSSTDLFHSPAGTV 133 (424)
Q Consensus 77 ~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~------~~~~f~Lss~DlfgkPaG~V 133 (424)
.|.++||...+ ...|++||.+.+||.+++..|.+ ..+||.| ++.|+|..
T Consensus 77 ~l~~~v~D~d~---~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~l-----yg~~~~~~ 131 (151)
T cd04018 77 RIKIQIRDWDR---VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNL-----YGSPREYS 131 (151)
T ss_pred EEEEEEEECCC---CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEe-----ecCccccc
Confidence 78888877422 34799999999999999955532 2468777 34556643
No 65
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=7.5e-15 Score=128.52 Aligned_cols=105 Identities=24% Similarity=0.391 Sum_probs=86.4
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecC-CCCceeeccccCCCCCCccCceEEEEeccc---------------CCC
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYN-PDETHSTQVINGGGKNPEFNEKLIIKINQL---------------DGA 76 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~d-p~~k~sT~Vdk~GGrNPvWNetlrF~V~~~---------------~~~ 76 (424)
|.|+|++|+||+.. ..+++||||+|++.+. ...+++|++++. +.||+|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 68999999999999 8999999999999742 146889999875 89999999999999643 245
Q ss_pred ceEEEEEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 77 VLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 77 ~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
.|.++||...+ ...+++||++.|||.+++..|. ...||+|...
T Consensus 79 ~l~i~V~d~~~---~~~~~~IG~~~i~l~~l~~~~~-~~~W~~L~~~ 121 (137)
T cd08675 79 ELRVELWHASM---VSGDDFLGEVRIPLQGLQQAGS-HQAWYFLQPR 121 (137)
T ss_pred EEEEEEEcCCc---CcCCcEEEEEEEehhhccCCCc-ccceEecCCc
Confidence 78888877533 2369999999999999986665 7899999764
No 66
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=1.7e-15 Score=127.88 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=87.8
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEeccc--CCCceEEEEEEe
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQL--DGAVLKCEIWML 85 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~--~~~~Lk~EV~~~ 85 (424)
.|.|.|+|++|+||++.+..+++||||++.+.++.. .+++|++.+ ++.||.||++|.|.+... ....|.++||..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 589999999999999999999999999999976532 367889876 789999999999999643 246789999875
Q ss_pred ehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 86 SRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
.. ...+++||.+.|+|.+ .|...+.||+|.+.
T Consensus 92 ~~---~~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~ 123 (134)
T cd00276 92 DS---VGRNEVIGQVVLGPDS---GGEELEHWNEMLAS 123 (134)
T ss_pred CC---CCCCceeEEEEECCCC---CCcHHHHHHHHHhC
Confidence 33 2469999999999999 34436789999765
No 67
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.59 E-value=9.6e-15 Score=121.76 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=79.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc----CCCceEEEEEEeeh
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL----DGAVLKCEIWMLSR 87 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~----~~~~Lk~EV~~~~r 87 (424)
.|.|+|++||||+ .++.||||+|++.+ ++++|++.+ +..||+|||+|.|.+... .+..|.++||...
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~---~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~- 75 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGG---QKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR- 75 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECC---EeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc-
Confidence 6899999999999 57899999999975 678899865 668999999999998432 1356888887632
Q ss_pred hccccCCCccEEEEEechhhhcC--CceeeeEEEccC
Q 037748 88 ARNYMEDQLLGFALVPISQVVGN--GKVVTQDYNLSS 122 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlLa~--G~~~~~~f~Lss 122 (424)
.+..|++||++.|+|.++... +.-..+||+|..
T Consensus 76 --~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 76 --SLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred --ccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 245699999999999999832 222678999964
No 68
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.57 E-value=1.2e-14 Score=126.96 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=78.7
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecC-CCCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEe
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYN-PDETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWML 85 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~d-p~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~ 85 (424)
..|.|.|+|++||||+ ..+..|||++|+|..+ .+.+++|+|.+ ...||+|||+|.|.|+ +..+..|.+.||+-
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~r-ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKK-LALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceec-CCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 3689999999999999 4578999999999753 34677777766 8999999999999995 34467899999874
Q ss_pred ehhccccCCCccEEEEEechhh-hcCCc
Q 037748 86 SRARNYMEDQLLGFALVPISQV-VGNGK 112 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dl-La~G~ 112 (424)
+ ++..+++||++.+||.++ ++.|.
T Consensus 88 D---rfs~~d~IG~v~l~l~~~~~~~~~ 112 (118)
T cd08677 88 D---RFSRHSTLGELRLKLADVSMMLGA 112 (118)
T ss_pred C---CCCCCceEEEEEEccccccCCccc
Confidence 3 356799999999999997 34443
No 69
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.57 E-value=1.4e-14 Score=124.74 Aligned_cols=107 Identities=23% Similarity=0.291 Sum_probs=83.9
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecC--CCCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYN--PDETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWM 84 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~d--p~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~ 84 (424)
..|+|.|+|++||||+..+++++.||||+|.+... ...+++|++.+ ++.||+|||+|.|.+. ......|.++||.
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 46899999999999999999999999999999642 23467888875 7899999999999985 3224578899987
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
..+ +..|++||++.||+.+. |.....|+.|-+
T Consensus 92 ~~~---~~~~~~lG~~~i~~~~~---~~~~~~w~~~~~ 123 (136)
T cd08405 92 KDR---LSRNDLIGKIYLGWKSG---GLELKHWKDMLS 123 (136)
T ss_pred CCC---CCCCcEeEEEEECCccC---CchHHHHHHHHh
Confidence 432 34689999999999885 333445666654
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.57 E-value=1.8e-14 Score=126.20 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=79.0
Q ss_pred CCCCcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecc-cCCCceEEEEE
Q 037748 5 NDSEFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQ-LDGAVLKCEIW 83 (424)
Q Consensus 5 ~~~~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~-~~~~~Lk~EV~ 83 (424)
+....+|+|.|+|++||+|+. +++++.|||++|++.+ .+.+|+++++ ..||+|||+|.|.+.. .....|.++||
T Consensus 22 ~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~---~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~ 96 (127)
T cd04032 22 PTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG---QEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVW 96 (127)
T ss_pred cCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC---ccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEE
Confidence 345678999999999999985 7889999999999965 4889999965 5899999999998532 22568999998
Q ss_pred EeehhccccCCCccEEEEEechhhh
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVV 108 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlL 108 (424)
...+ +..|++||++.++|..+.
T Consensus 97 D~d~---~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 97 DRDN---GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred eCCC---CCCCCeeEEEEEEecCCc
Confidence 7433 347999999999999654
No 71
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=2.4e-14 Score=122.33 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=86.7
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWM 84 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~ 84 (424)
..|.|.|+|++|++|++.+..++.||||+|++.++. ..+++|++.+ ++.||+|||+|.|.+.. .....|.++||.
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 479999999999999999999999999999997643 2467899887 79999999999999953 224578999986
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
..+ ...|++||++.|+|.. .|.....||.+..
T Consensus 90 ~d~---~~~~~~lG~~~i~l~~---~~~~~~~W~~~l~ 121 (133)
T cd08384 90 KDI---GKSNDYIGGLQLGINA---KGERLRHWLDCLK 121 (133)
T ss_pred CCC---CCCccEEEEEEEecCC---CCchHHHHHHHHh
Confidence 432 3468999999999975 4444567888854
No 72
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.55 E-value=2e-14 Score=128.18 Aligned_cols=93 Identities=25% Similarity=0.357 Sum_probs=80.4
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhc
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRAR 89 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~ 89 (424)
.|.|.|+|++|++|+..++ ++.||||+|++.+ ++.+|++.++ ..||+|||+|.|.+... ...++++||...
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~---~~~kT~vvk~-t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d--- 71 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN---QKVKTRVIKK-NLNPVWNEELTLSVPNP-MAPLKLEVFDKD--- 71 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC---EEEEeeeEcC-CCCCeecccEEEEecCC-CCEEEEEEEECC---
Confidence 5999999999999998887 8999999999965 6899999875 89999999999999776 677999998742
Q ss_pred cccCCCccEEEEEechhhhcCC
Q 037748 90 NYMEDQLLGFALVPISQVVGNG 111 (424)
Q Consensus 90 ~~l~D~lIG~a~VPL~dlLa~G 111 (424)
.+..|++||.+.++|.+++...
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhhhh
Confidence 2446899999999999998443
No 73
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.55 E-value=9.7e-15 Score=125.42 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=83.1
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWM 84 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~ 84 (424)
..|.|.|+|++||+|++.+.+++.||||+|.+...+ ..+++|++ ..++.||+|||+|.|.|.. .....|.++||.
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSV-KKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCc-ccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 469999999999999999999999999999996543 24678887 4689999999999999852 323468888987
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
..+ +..|++||++.||+. +.|.....|+.+-+.
T Consensus 91 ~~~---~~~~~~IG~~~l~~~---~~~~~~~~w~~~~~~ 123 (134)
T cd08403 91 YDR---VGHNELIGVCRVGPN---ADGQGREHWNEMLAN 123 (134)
T ss_pred CCC---CCCCceeEEEEECCC---CCCchHHHHHHHHHC
Confidence 432 345999999999987 223324467777553
No 74
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.54 E-value=3.5e-14 Score=122.55 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=80.4
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC----CCceeeccccCCCCCCccCceEEEEeccc----CCCceEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP----DETHSTQVINGGGKNPEFNEKLIIKINQL----DGAVLKC 80 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp----~~k~sT~Vdk~GGrNPvWNetlrF~V~~~----~~~~Lk~ 80 (424)
..+.|.|+|++||+|+..+.+++.||||+|.+.+.. ..+++|+++++ ..||+|||+|.|.+... ....|.+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 357899999999999999999999999999997543 35889999874 48999999999999531 2457888
Q ss_pred EEEEeehhccccCCCccEEEEEechhhhcC
Q 037748 81 EIWMLSRARNYMEDQLLGFALVPISQVVGN 110 (424)
Q Consensus 81 EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~ 110 (424)
+||...+ +..|++||++.++|.++..-
T Consensus 93 ~V~d~d~---~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 93 TVKDYDL---LGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEecCC---CCCCcEeEEEEEeHHHCCcc
Confidence 8887432 33599999999999999843
No 75
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.54 E-value=4.4e-14 Score=127.41 Aligned_cols=109 Identities=18% Similarity=0.293 Sum_probs=87.4
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecC--CCCceeeccccCCCCCCccCceEEEEec---ccCCCceEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYN--PDETHSTQVINGGGKNPEFNEKLIIKIN---QLDGAVLKCEIW 83 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~d--p~~k~sT~Vdk~GGrNPvWNetlrF~V~---~~~~~~Lk~EV~ 83 (424)
..|.|.|+|++||||+..+..++.||||+|++..+ ...+++|+|+++ ..||+|||+|.|.+. +..+..|.++||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 67999999999999999999999999999999643 346889999976 589999999999863 332457889998
Q ss_pred EeehhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
...+ +..|++||++.++|.++.-.|. ...||.|..
T Consensus 104 d~d~---~~~d~~lG~v~i~l~~~~~~~~-~~~w~~~~~ 138 (162)
T cd04020 104 DHDK---LSSNDFLGGVRLGLGTGKSYGQ-AVDWMDSTG 138 (162)
T ss_pred eCCC---CCCCceEEEEEEeCCccccCCC-ccccccCCh
Confidence 7432 3459999999999999875544 566776643
No 76
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.54 E-value=3.8e-14 Score=123.69 Aligned_cols=107 Identities=27% Similarity=0.370 Sum_probs=83.1
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEe
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWML 85 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~ 85 (424)
.+.|.|+|++||||...+ +++.||||+|+|.++.+ .+++|++. .++.||+|||+|.|.|. +.....|.++||..
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~-~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVV-DGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccE-eCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 588999999999999999 99999999999986533 47789985 58999999999999995 34346789999874
Q ss_pred ehhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 86 SRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
.. +..+++||++.|+.... ..|.+...|+.+-+
T Consensus 92 ~~---~~~~~~lG~v~ig~~~~-~~~~~~~hW~~~~~ 124 (137)
T cd08409 92 GG---VRKSKLLGRVVLGPFMY-ARGKELEHWNDMLS 124 (137)
T ss_pred CC---CCCcceEEEEEECCccc-CCChHHHHHHHHHh
Confidence 33 45799999999995433 23333445666543
No 77
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.53 E-value=6.1e-14 Score=118.40 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=80.2
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEe-cc--cCCCceEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKI-NQ--LDGAVLKCEIW 83 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V-~~--~~~~~Lk~EV~ 83 (424)
..+.|.|+|++||+|++.+++++.||||+|.+.++. ..+++|+++++ +.||+||++|.|.. .. .....+.++||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 358999999999999999999999999999986543 35789999875 59999999999963 32 22357888998
Q ss_pred EeehhccccCCCccEEEEEechhhhcCCc
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVVGNGK 112 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlLa~G~ 112 (424)
.... + +|++||++.++|++|++...
T Consensus 92 d~~~---~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 92 DEDR---F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred EcCC---c-CCeeEEEEEEEcccCCCCcc
Confidence 7422 3 79999999999999985544
No 78
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.53 E-value=6.7e-14 Score=120.50 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=83.5
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWM 84 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~ 84 (424)
..|.|.|+|++||||++.+..++.||||+|.+..+.+ .+++|++ ..++.||+|||+|.|.+.. .....|.++||.
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccc-eeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 4689999999999999999999999999999965432 4567776 5689999999999999952 223468889987
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
..+ +..|++||++.|+|.. .|.+...|++|.+
T Consensus 92 ~~~---~~~~~~iG~~~i~~~~---~~~~~~~W~~~~~ 123 (136)
T cd08402 92 YDR---IGKNDPIGKVVLGCNA---TGAELRHWSDMLA 123 (136)
T ss_pred CCC---CCCCceeEEEEECCcc---CChHHHHHHHHHh
Confidence 432 3468999999999975 2443566777755
No 79
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.52 E-value=7.2e-14 Score=119.14 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=89.0
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEeccc-CCCceEEEEEEeeh
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQL-DGAVLKCEIWMLSR 87 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~~-~~~~Lk~EV~~~~r 87 (424)
|.|.|+|++||+|+..+..++.||||+|.+.+.+ ..+++|++.+ +..||.||++|.|.+... ....|.++||+..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~- 90 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPADKDRRLSIEVWDWD- 90 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchhcCCEEEEEEEECC-
Confidence 8999999999999999989999999999997543 3578899865 579999999999998532 1457899998743
Q ss_pred hccccCCCccEEEEEechhhhcCCceeeeEEEccCCC
Q 037748 88 ARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTD 124 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~D 124 (424)
....|++||.+.++|.+++.. . ...||+|...+
T Consensus 91 --~~~~~~~iG~~~~~l~~l~~~-~-~~~w~~L~~~~ 123 (131)
T cd04026 91 --RTTRNDFMGSLSFGVSELIKM-P-VDGWYKLLNQE 123 (131)
T ss_pred --CCCCcceeEEEEEeHHHhCcC-c-cCceEECcCcc
Confidence 234699999999999999854 3 67899997754
No 80
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=1.3e-13 Score=116.32 Aligned_cols=104 Identities=16% Similarity=0.244 Sum_probs=81.0
Q ss_pred EEeecCCCCCCCCCCCCcceEEEEEecCC----CCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhc-c
Q 037748 16 FVHHARNIHNICIYDNQDVYAKFSLTYNP----DETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRAR-N 90 (424)
Q Consensus 16 tV~SARDLKNVn~fgKqDpYAvvsIs~dp----~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~-~ 90 (424)
..++||+|++.+++++.||||+|++.+.. ...++|+++++ ..||+||++|.|.+.......|+++||...... +
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence 34899999999999999999999998753 12578998874 799999999999874322457999999864310 1
Q ss_pred ccCCCccEEEEEechhhhcCCceeeeEEEcc
Q 037748 91 YMEDQLLGFALVPISQVVGNGKVVTQDYNLS 121 (424)
Q Consensus 91 ~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls 121 (424)
...|++||++.++|.+|+.... ...+|.|.
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~-~~~~~~l~ 113 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPG-QKLTLPLK 113 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCC-cEEEEEcc
Confidence 3479999999999999994433 45688883
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.51 E-value=4.4e-14 Score=121.88 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=87.9
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWM 84 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~ 84 (424)
..+.|.|+|++||+|+..+++++.||||+|.+.+... .+.+|+|.+ +..||+|||+|.|.|.. .....|.++||.
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 3678999999999999999999999999999975432 366788775 67999999999999952 224567788877
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCce
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAG 131 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG 131 (424)
..+ +..+++||++.+++.. . |.....|+.|... -|+|-+
T Consensus 92 ~d~---~~~~~~iG~~~~~~~~-~--~~~~~~w~~l~~~--~~~~i~ 130 (136)
T cd08404 92 SDR---VTKNEVIGRLVLGPKA-S--GSGGHHWKEVCNP--PRRQIA 130 (136)
T ss_pred CCC---CCCCccEEEEEECCcC-C--CchHHHHHHHHhC--CCCeee
Confidence 432 4469999999999998 3 4436678888654 245543
No 82
>PLN03008 Phospholipase D delta
Probab=99.50 E-value=1.3e-13 Score=151.32 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=97.2
Q ss_pred cceEEEEEEeecCCCCCCCC------------------------------------------CCCCcceEEEEEecCCCC
Q 037748 9 FSGILEIFVHHARNIHNICI------------------------------------------YDNQDVYAKFSLTYNPDE 46 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~------------------------------------------fgKqDpYAvvsIs~dp~~ 46 (424)
.-|+|+|+|..|+.|+|.++ ++++||||+|.|.. +.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~--~r 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ--AT 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC--cc
Confidence 45999999999999998333 34669999999954 23
Q ss_pred ceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCC
Q 037748 47 THSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLF 126 (424)
Q Consensus 47 k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~Dlf 126 (424)
..+|+|++ .+.||+|||.|+|.|... ...|.++|+. .+.+++++||++.|||.+|+. |...+.|++|...+..
T Consensus 90 v~RTrVi~-n~~NPvWNE~F~f~vah~-~s~L~f~VkD----~D~~gaD~IG~a~IPL~~L~~-Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 90 LARTRVLK-NSQEPLWDEKFNISIAHP-FAYLEFQVKD----DDVFGAQIIGTAKIPVRDIAS-GERISGWFPVLGASGK 162 (868)
T ss_pred eeeEEeCC-CCCCCCcceeEEEEecCC-CceEEEEEEc----CCccCCceeEEEEEEHHHcCC-CCceEEEEEccccCCC
Confidence 45899985 477999999999999765 4578888865 455688999999999999764 4447899999775421
Q ss_pred C-CCceEEEEEEEEec
Q 037748 127 H-SPAGTVKLSLSVNT 141 (424)
Q Consensus 127 g-kPaG~V~LsLtf~~ 141 (424)
. ++.|.|+|+|.|.+
T Consensus 163 p~k~~~kl~v~lqf~p 178 (868)
T PLN03008 163 PPKAETAIFIDMKFTP 178 (868)
T ss_pred CCCCCcEEEEEEEEEE
Confidence 1 23579999999975
No 83
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.48 E-value=1e-13 Score=106.09 Aligned_cols=85 Identities=25% Similarity=0.385 Sum_probs=71.6
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|.|+|++||||+..+..++.|||+++++.+....+++|++.+.+ .||.||++|.|.+.......|.++||.... ..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~---~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKDS---FG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEETS---SS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECCC---CC
Confidence 89999999999999999999999999999865567999999866 999999999999864434559999987422 23
Q ss_pred CCCccEEEE
Q 037748 93 EDQLLGFAL 101 (424)
Q Consensus 93 ~D~lIG~a~ 101 (424)
.|++||+|.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 499999984
No 84
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=1.8e-13 Score=117.30 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=75.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
.|.|+|++|+||++.+.+++.||||+|++.+. ....+|.+.+ ++.||+|||+|.|.+.......|.++||... ..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~-~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d---~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIP-NTLNPVFGKMFELEATLPGNSILKISVMDYD---LL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEE-CCCCCccceEEEEEecCCCCCEEEEEEEECC---CC
Confidence 37899999999999999999999999999653 2335677766 4999999999999985443567999998742 23
Q ss_pred cCCCccEEEEEechhhh
Q 037748 92 MEDQLLGFALVPISQVV 108 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlL 108 (424)
..|++||++.|+|.+.+
T Consensus 76 ~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 76 GSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCceeEEEEEeecccc
Confidence 47999999999999987
No 85
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.48 E-value=1.6e-13 Score=161.02 Aligned_cols=122 Identities=19% Similarity=0.343 Sum_probs=102.9
Q ss_pred CCcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccC-CCceEEEEEEe
Q 037748 7 SEFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLD-GAVLKCEIWML 85 (424)
Q Consensus 7 ~~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~-~~~Lk~EV~~~ 85 (424)
+...|.|-|+|++|+||+ ..||++||||+|.+.. +++++|+|++ .++||+|||.|.|.++.++ +..+.+|||..
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVS-HSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccC-CCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 346899999999999999 7799999999999974 3577899988 6899999999999997653 34588898763
Q ss_pred ehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceE---EEEEEEEec
Q 037748 86 SRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGT---VKLSLSVNT 141 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~---V~LsLtf~~ 141 (424)
+.++|+.+|.|.|+|.+|+..|. +..||+|... ++.+|. +++++.|..
T Consensus 2051 ----d~f~kd~~G~~~i~l~~vv~~~~-~~~~~~L~~~---~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 ----NTFGKSSLGKVTIQIDRVVMEGT-YSGEYSLNPE---SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ----CccCCCCCceEEEEHHHHhcCce-eeeeeecCcc---cccCCCcceEEEEEEecC
Confidence 45688899999999999998887 8999999842 456788 999998863
No 86
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.47 E-value=6.2e-13 Score=116.45 Aligned_cols=99 Identities=14% Similarity=0.257 Sum_probs=77.6
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehh--
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRA-- 88 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~-- 88 (424)
|.|+|++|+||+ +-.||||+|.+.... ..+.+|+|+ .+..||+|||+|.|.|+. ...|++.||...+.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i-~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVC-RDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeee-cCCCCCccceEEEEEeCC--CCEEEEEEEEcccccc
Confidence 789999999997 458999999886532 357999999 589999999999999974 46899999986432
Q ss_pred --ccccCCCccEEEEEechh-hh-cCCceeeeEEEc
Q 037748 89 --RNYMEDQLLGFALVPISQ-VV-GNGKVVTQDYNL 120 (424)
Q Consensus 89 --~~~l~D~lIG~a~VPL~d-lL-a~G~~~~~~f~L 120 (424)
+....|++||.+.|.|.- .+ .+|. ....+.|
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~~~~~~~~~-~~~~~~~ 107 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDPQSLQTKKW-QEKVISM 107 (118)
T ss_pred cccccCcccEEEEEEEEECHHHhccCCe-eEEEEEe
Confidence 234469999999999944 33 5565 5566776
No 87
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.46 E-value=7.9e-13 Score=119.01 Aligned_cols=127 Identities=13% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCCCcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCc-eeeccccCCCCCCccCceEEEEecccCCCceEEEEE
Q 037748 5 NDSEFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDET-HSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIW 83 (424)
Q Consensus 5 ~~~~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k-~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~ 83 (424)
|.....=.|.|.|+-||+|.-. -++||.|+|.+ ++ .+|+|... +.||.|||.|.|..... ...+.+.||
T Consensus 5 n~~R~~~sL~v~V~EAk~Lp~~-----~~~Y~~i~Ld~---~~vaRT~v~~~-~~nP~W~E~F~f~~~~~-~~~l~v~v~ 74 (146)
T cd04013 5 NSRRTENSLKLWIIEAKGLPPK-----KRYYCELCLDK---TLYARTTSKLK-TDTLFWGEHFEFSNLPP-VSVITVNLY 74 (146)
T ss_pred cceEEEEEEEEEEEEccCCCCc-----CCceEEEEECC---EEEEEEEEEcC-CCCCcceeeEEecCCCc-ccEEEEEEE
Confidence 4445566899999999999763 48999999976 44 59999865 56999999999987433 345777776
Q ss_pred Eeehhcc-ccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCC--------CCceEEEEEEEEecC
Q 037748 84 MLSRARN-YMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFH--------SPAGTVKLSLSVNTP 142 (424)
Q Consensus 84 ~~~r~~~-~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~Dlfg--------kPaG~V~LsLtf~~~ 142 (424)
....... ..+|++||.+.|||.+|. .|...++||+|...+-.. ++.|.|+|.+.|.+.
T Consensus 75 k~~~~~~~~~~~~~IG~V~Ip~~~l~-~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 75 RESDKKKKKDKSQLIGTVNIPVTDVS-SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EccCccccccCCcEEEEEEEEHHHhc-CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 4322221 236899999999999998 455588999998754222 345799999999853
No 88
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.46 E-value=3.2e-13 Score=111.74 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=71.3
Q ss_pred EEEeecCCCCCCCCCCCCcceEEEEEecCC---CCceeeccccCCCCCCccCceEEEEecccC----CCceEEEEEEeeh
Q 037748 15 IFVHHARNIHNICIYDNQDVYAKFSLTYNP---DETHSTQVINGGGKNPEFNEKLIIKINQLD----GAVLKCEIWMLSR 87 (424)
Q Consensus 15 VtV~SARDLKNVn~fgKqDpYAvvsIs~dp---~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~----~~~Lk~EV~~~~r 87 (424)
+-.++||+|+..+++++.||||+|++.+.. ...++|+++++ ..||+|| +|.|.+.... ...|.++||...+
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345699999999999999999999987642 23689999985 4999999 7777764321 4578999987533
Q ss_pred hccccCCCccEEEEEechhhh
Q 037748 88 ARNYMEDQLLGFALVPISQVV 108 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlL 108 (424)
...|++||++.++|.+|+
T Consensus 82 ---~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 ---SGKHDLIGEFETTLDELL 99 (110)
T ss_pred ---CCCCcEEEEEEEEHHHHh
Confidence 336999999999999998
No 89
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.45 E-value=6.1e-13 Score=117.21 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=83.1
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEe
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWML 85 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~ 85 (424)
.+.|.|+|++||||...+..+..|||++|+|-.++. .+++|+|.+ +..||+|||+|.|.|. +..+..|.+.||..
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 568999999999999999889999999999976543 377888886 5599999999999995 33456789999874
Q ss_pred ehhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 86 SRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
. ++..+++||++.|+... .|.....|+.+.+
T Consensus 93 d---~~~~~~~iG~v~lg~~~---~g~~~~hW~~ml~ 123 (136)
T cd08406 93 T---EDGKTPNVGHVIIGPAA---SGMGLSHWNQMLA 123 (136)
T ss_pred C---CCCCCCeeEEEEECCCC---CChhHHHHHHHHH
Confidence 3 35579999999997753 3433445666544
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.45 E-value=3.7e-13 Score=116.83 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=80.9
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEe
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWML 85 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~ 85 (424)
.|.|.|+|++||+|+..+.+++.||||+|++.+.. ..+++|+|.+ ++.||+|||+|.|.|. +..+..|.++||..
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 58999999999999999999999999999985432 2467888865 6899999999999995 23234688888864
Q ss_pred ehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 86 SRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
+ ....|++||++.+..... .+.....|+.|...
T Consensus 92 d---~~~~~~~iG~~~l~~~~~--~~~~~~~W~~l~~~ 124 (135)
T cd08410 92 N---VKSSNDFIGRIVIGQYSS--GPSETNHWRRMLNS 124 (135)
T ss_pred C---CCCCCcEEEEEEEcCccC--CchHHHHHHHHHhC
Confidence 2 244799999998765332 22224567777553
No 91
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.44 E-value=5.7e-13 Score=118.25 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=80.4
Q ss_pred cceEEEEEEeecCCCCCCC--CCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEec--ccCCCceEEEE
Q 037748 9 FSGILEIFVHHARNIHNIC--IYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEI 82 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn--~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV 82 (424)
..|.|.|+|++||||+..+ ..+..|||++|+|-.+.+ .+++|++.+ +..||+|||.|.|.|. +..+..|.++|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK-HKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-CCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 3688999999999999887 334489999999987543 367888775 7999999999999995 34456799999
Q ss_pred EEeehhccccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 83 WMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 83 ~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
|...+ +..+++||++.+++.. .|.+...|..+
T Consensus 92 ~d~d~---~~~~d~iG~v~lg~~~---~g~~~~hW~~m 123 (138)
T cd08407 92 LNQDS---PGQSLPLGRCSLGLHT---SGTERQHWEEM 123 (138)
T ss_pred EeCCC---CcCcceeceEEecCcC---CCcHHHHHHHH
Confidence 87533 4569999999999963 34333345444
No 92
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.44 E-value=2.1e-12 Score=117.35 Aligned_cols=123 Identities=21% Similarity=0.394 Sum_probs=94.1
Q ss_pred EEEEEEeecCCCCCCCCC--CCCcceEEEEEec--CCCCceeeccccCCCCCCccCceEEEEeccc--------CCCceE
Q 037748 12 ILEIFVHHARNIHNICIY--DNQDVYAKFSLTY--NPDETHSTQVINGGGKNPEFNEKLIIKINQL--------DGAVLK 79 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~f--gKqDpYAvvsIs~--dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~--------~~~~Lk 79 (424)
.+||+|+.|++++-...+ +..|||+++++-+ +..++.+|+|.+ +-.||+|||+|.|.|... ....|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 478999999996644444 4799999999843 345689998887 679999999999999533 235699
Q ss_pred EEEEEeehhcccc-CCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 80 CEIWMLSRARNYM-EDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 80 ~EV~~~~r~~~~l-~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
|+||... .++ .|++||+|.|+|..+..... ...||+|... ...--|.|++.+..+.
T Consensus 82 ~~V~d~~---~f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~--~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 82 FEVYHKG---GFLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDG--RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEEeCC---CcccCCCeeEEEEEEcccccccCc-ceEEEEhhhC--CCCcCCEEEEEEEecC
Confidence 9999742 233 59999999999999974433 5569999753 1244789999999884
No 93
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.42 E-value=6.7e-13 Score=116.74 Aligned_cols=108 Identities=19% Similarity=0.386 Sum_probs=85.6
Q ss_pred CcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC-C--CceeeccccCCCCCCccCceEEEEec--ccCCCceEEEE
Q 037748 8 EFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP-D--ETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEI 82 (424)
Q Consensus 8 ~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp-~--~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV 82 (424)
...|.|.|+|++||||+..+..+..|||++|.+..+. + .+++|++.+ +-.||+|||+|.|.|. +.....|.+.|
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 3578999999999999999999999999999997532 2 367899886 7799999999999996 34456899999
Q ss_pred EEeehhccccCCCccEEEEEechhhhcCCc-eeeeEEEccC
Q 037748 83 WMLSRARNYMEDQLLGFALVPISQVVGNGK-VVTQDYNLSS 122 (424)
Q Consensus 83 ~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~-~~~~~f~Lss 122 (424)
|...+ +..+++||++.+++... |. ....|+.+.+
T Consensus 91 ~~~~~---~~~~~~iG~v~l~~~~~---~~~~~~hW~~~l~ 125 (138)
T cd08408 91 YNKRK---MKRKEMIGWFSLGLNSS---GEEEEEHWNEMKE 125 (138)
T ss_pred EECCC---CCCCcEEEEEEECCcCC---CchHHHHHHHHHh
Confidence 87543 45799999999998743 32 1345777754
No 94
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.31 E-value=2.2e-11 Score=92.58 Aligned_cols=102 Identities=27% Similarity=0.421 Sum_probs=80.9
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcccc
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYM 92 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l 92 (424)
|.|+|++|++|+......+.+|||++++.. ....+|++..+ ..||.||+.|.|.+.......+.++||.... ..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~---~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKN-TLNPVWNETFEFPVLDPESDTLTVEVWDKDR---FS 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCC-CCCCcccceEEEEccCCCCCEEEEEEEecCC---CC
Confidence 579999999999998899999999998865 45778888864 5799999999999976225678999887432 33
Q ss_pred CCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 93 EDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
.+.+||.+.|+|.++...+.....||+|
T Consensus 75 ~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 5899999999999998223225567664
No 95
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.29 E-value=2.8e-11 Score=93.41 Aligned_cols=94 Identities=27% Similarity=0.400 Sum_probs=77.2
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccc
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~ 91 (424)
+|.|+|+.|++|.....++..+||+++.+.+......+|++..... ||.||+.|.|.+.......|.++||.... .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~-~P~w~e~~~~~~~~~~~~~l~i~v~~~~~---~ 76 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTL-NPVWNETFEFEVPPPELAELEIEVYDKDR---F 76 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCC-CCcccceEEEEecCcccCEEEEEEEecCC---c
Confidence 4789999999999999888999999999975323478888877654 99999999999965435788999987532 2
Q ss_pred cCCCccEEEEEechhhhc
Q 037748 92 MEDQLLGFALVPISQVVG 109 (424)
Q Consensus 92 l~D~lIG~a~VPL~dlLa 109 (424)
..+.+||.+.+||.++..
T Consensus 77 ~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred cCCceeEEEEEEHHHccc
Confidence 258999999999999873
No 96
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.25 E-value=2.6e-11 Score=108.29 Aligned_cols=96 Identities=11% Similarity=0.218 Sum_probs=75.3
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccC-CCceEEEEEEe
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLD-GAVLKCEIWML 85 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~-~~~Lk~EV~~~ 85 (424)
..|.|-|+|++||+|+....-+..|||++|+|-+.++ .+++|+|.++-+-||+|||+|.|.|.... +..|.+++|..
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 3688999999999999865455679999999998654 48899999988889999999999996431 23455555543
Q ss_pred ehhccccCCCccEEEEEechhh
Q 037748 86 SRARNYMEDQLLGFALVPISQV 107 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dl 107 (424)
.+ ...+++||.+.+++...
T Consensus 92 ~~---~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SS---VRRKHFLGQVWISSDSS 110 (135)
T ss_pred CC---CcCCceEEEEEECCccC
Confidence 22 34689999999999864
No 97
>PLN02270 phospholipase D alpha
Probab=99.20 E-value=1.3e-10 Score=127.56 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=97.5
Q ss_pred ceEEEEEEeecCCCCCCC----------------CCC--CCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEec
Q 037748 10 SGILEIFVHHARNIHNIC----------------IYD--NQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKIN 71 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn----------------~fg--KqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~ 71 (424)
-|+|+|+|..|++|+|-+ -++ .-||||.|.|.+- .--+|+|+.+--.||+|||.|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a--~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA--RVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc--EEEEEeecCCCCCCCccccceEEeec
Confidence 599999999999999821 122 3499999999762 34599999888889999999999997
Q ss_pred ccCCCceEEEEEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCC-ce--EEEEEEEEecCC
Q 037748 72 QLDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSP-AG--TVKLSLSVNTPL 143 (424)
Q Consensus 72 ~~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkP-aG--~V~LsLtf~~~~ 143 (424)
.. ...+.+.| ++.++++-.+||.|.||+.+|+. |...++||+|-..+ |+| +| .|+|+|.|.+..
T Consensus 85 h~-~~~v~f~v----kd~~~~g~~~ig~~~~p~~~~~~-g~~i~~~~~~~~~~--~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 85 HM-ASNIIFTV----KDDNPIGATLIGRAYIPVEEILD-GEEVDRWVEILDND--KNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cC-cceEEEEE----ecCCccCceEEEEEEEEHHHhcC-CCccccEEeccCCC--CCcCCCCCEEEEEEEEEEcc
Confidence 65 34455554 56678999999999999999885 44489999997764 555 23 899999997643
No 98
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.7e-10 Score=117.50 Aligned_cols=128 Identities=22% Similarity=0.265 Sum_probs=102.2
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEeeh
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWMLSR 87 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~~r 87 (424)
...|.|+|+.|+||.-.+.=+.-|||++++|-.+.+.+++|+|.+ |=.||+|||+|+|.|. +.....|.+.||..+|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 467899999999999999334589999999998888899999987 6677999999999985 3446789999988544
Q ss_pred hccccCCCccEEEEEechhhhcCCceeeeEEEccCC--CCCCCCceEEEEEEEEecCC
Q 037748 88 ARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST--DLFHSPAGTVKLSLSVNTPL 143 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~--DlfgkPaG~V~LsLtf~~~~ 143 (424)
|..+++||++.|||..+--... ...|++|... ..-.. +|.|-|+|.|.+..
T Consensus 245 ---fsr~~~iGev~~~l~~~~~~~~-~~~w~~l~~~~~~~~~~-~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 245 ---FSRHDFIGEVILPLGEVDLLST-TLFWKDLQPSSTDSEEL-AGELLLSLCYLPTA 297 (421)
T ss_pred ---cccccEEEEEEecCcccccccc-ceeeeccccccCCcccc-cceEEEEEEeecCC
Confidence 6679999999999988873333 5678888662 21122 38999999998753
No 99
>PLN02952 phosphoinositide phospholipase C
Probab=99.04 E-value=3e-09 Score=114.37 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=94.5
Q ss_pred ceEEEEEEeecCCCC------CCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccCCCceEEE
Q 037748 10 SGILEIFVHHARNIH------NICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCE 81 (424)
Q Consensus 10 ~GtLEVtV~SARDLK------NVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~E 81 (424)
..+|.|+|++|.+|+ ..+.|..-|||++|.|.|-|. .+++|++++++ -||+||++|.|.|..++-+.++++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence 578999999998873 345566679999999998653 47799999877 799999999999975523567888
Q ss_pred EEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 82 IWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 82 V~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
||..++ .-.|++||.+.+||..|. .|. |+++|... .|.+.|.+.|-+.|.
T Consensus 548 V~D~D~---~~~ddfiGq~~lPv~~Lr-~Gy---R~VpL~~~--~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VREYDM---SEKDDFGGQTCLPVSELR-PGI---RSVPLHDK--KGEKLKNVRLLMRFI 597 (599)
T ss_pred EEecCC---CCCCCeEEEEEcchhHhc-CCc---eeEeCcCC--CCCCCCCEEEEEEEE
Confidence 876422 235899999999999984 344 68899655 578888888877774
No 100
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.03 E-value=4.9e-10 Score=97.43 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=69.3
Q ss_pred EEEEEeecCCCCCCC---CCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhc
Q 037748 13 LEIFVHHARNIHNIC---IYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRAR 89 (424)
Q Consensus 13 LEVtV~SARDLKNVn---~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~ 89 (424)
|.|+|++||||.+.. +++++|+|++|.+.. .++.+|++. +||+|||+|.|+|+. ...+.+.||.+ ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved--~~kaRTr~s----rnd~WnE~F~i~Vdk--~nEiel~VyDk--~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED--VERARTKPS----RNDRWNEDFEIPVEK--NNEEEVIVYDK--GG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC--EEEEeccCC----CCCcccceEEEEecC--CcEEEEEEEeC--CC
Confidence 789999999999999 778899999998854 458888885 999999999999953 45677777764 32
Q ss_pred cccCCCccEEEEEechhhh
Q 037748 90 NYMEDQLLGFALVPISQVV 108 (424)
Q Consensus 90 ~~l~D~lIG~a~VPL~dlL 108 (424)
+ ..-.||-..|.|+|++
T Consensus 71 ~--~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 D--QPVPVGLLWLRLSDIA 87 (109)
T ss_pred C--eecceeeehhhHHHHH
Confidence 2 3567999999999998
No 101
>PLN02223 phosphoinositide phospholipase C
Probab=98.95 E-value=7e-09 Score=110.21 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=81.9
Q ss_pred ceEEEEEEeecCCCC-----CCCCCCCCcceEEEEEecCCCC--ceeeccccCCCCCCccCceEEEEecccCCCceEEEE
Q 037748 10 SGILEIFVHHARNIH-----NICIYDNQDVYAKFSLTYNPDE--THSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEI 82 (424)
Q Consensus 10 ~GtLEVtV~SARDLK-----NVn~fgKqDpYAvvsIs~dp~~--k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV 82 (424)
..+|.|+|++|.+|. .+..+++.|||++|.|.|-|.. +++|. +.+.|-||+|||+|.|.|..++=+.|+++|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~-v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTT-VKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEE-eCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 468999999999873 2345678999999999986543 56775 567899999999999999655335689999
Q ss_pred EEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 83 WMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 83 ~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
+..++ ...|++||.+.+||..|. .|. |..+|...
T Consensus 487 ~D~D~---~~~ddfiGQ~~LPv~~Lr-~Gy---R~VpL~~~ 520 (537)
T PLN02223 487 YDYEV---STADAFCGQTCLPVSELI-EGI---RAVPLYDE 520 (537)
T ss_pred EecCC---CCCCcEEEEEecchHHhc-CCc---eeEeccCC
Confidence 76433 235899999999999984 444 67788765
No 102
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.93 E-value=6e-09 Score=117.32 Aligned_cols=132 Identities=16% Similarity=0.256 Sum_probs=107.4
Q ss_pred CCCcceEEEEEEeecCCCCCCC--CCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEE
Q 037748 6 DSEFSGILEIFVHHARNIHNIC--IYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIW 83 (424)
Q Consensus 6 ~~~~~GtLEVtV~SARDLKNVn--~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~ 83 (424)
...++|+|+|+|.+|++|+..+ +=+.-|||.++..+.. ..-||+|.+ .-.||+|||++=+.|... +..|.++||
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r--~~gkT~v~~-nt~nPvwNEt~Yi~lns~-~d~L~Lsly 506 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR--VIGKTRVKK-NTLNPVWNETFYILLNSF-TDPLNLSLY 506 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccc--cCCccceee-ccCCccccceEEEEeccc-CCceeEEEE
Confidence 4568999999999999999998 4478999999975542 333777766 456999999999999766 667999998
Q ss_pred EeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEecCCCCCC
Q 037748 84 MLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNTPLTLNP 147 (424)
Q Consensus 84 ~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~~~p~~~ 147 (424)
..+ +.+.|+++|++.++|..|.+++.....-|++.+. .++-|.|...+.|.+..++..
T Consensus 507 D~n---~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~k~ 564 (1227)
T COG5038 507 DFN---SFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIEDKK 564 (1227)
T ss_pred ecc---ccCCcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCCcc
Confidence 753 3457999999999999999766545568888876 588999999999998877663
No 103
>PLN02228 Phosphoinositide phospholipase C
Probab=98.91 E-value=2e-08 Score=107.50 Aligned_cols=124 Identities=13% Similarity=0.201 Sum_probs=91.2
Q ss_pred ceEEEEEEeecCCC------CCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCcc-CceEEEEecccCCCceEE
Q 037748 10 SGILEIFVHHARNI------HNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEF-NEKLIIKINQLDGAVLKC 80 (424)
Q Consensus 10 ~GtLEVtV~SARDL------KNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvW-NetlrF~V~~~~~~~Lk~ 80 (424)
..+|.|+|++|..| .+.+.+...|||++|.|.|-|. .+++|++.++| -||+| |++|.|.+..++=+.|++
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCC-CCceECCCeEEEEEEcCceeEEEE
Confidence 45899999999986 2223466799999999998654 36799998876 59999 999999996542256788
Q ss_pred EEEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 81 EIWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 81 EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
.|+..+ ....|++||.+.|||..| ..|. |..+|......--+..+|.+.+++..
T Consensus 509 ~V~D~d---~~~~d~figq~~lPv~~L-r~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYD---NDTQNDFAGQTCLPLPEL-KSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCC---CCCCCCEEEEEEcchhHh-hCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 886531 134689999999999998 5565 67788765322223567777777753
No 104
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.86 E-value=3.7e-08 Score=105.71 Aligned_cols=120 Identities=14% Similarity=0.239 Sum_probs=87.0
Q ss_pred ceEEEEEEeecCCC----CC--CCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccCCCceEEE
Q 037748 10 SGILEIFVHHARNI----HN--ICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCE 81 (424)
Q Consensus 10 ~GtLEVtV~SARDL----KN--Vn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~E 81 (424)
..+|.|+|+++.++ +. ...+..-|||++|.|.|-|. .+++|+++++++ ||+||++|.|.|.-++=+.|+++
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~-nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNW-IPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCC-CcccCCeeEEEEEcCceeEEEEE
Confidence 47899999999874 33 33456789999999998653 468999999885 99999999999864422568888
Q ss_pred EEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCC--ceEEEEEEEE
Q 037748 82 IWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSP--AGTVKLSLSV 139 (424)
Q Consensus 82 V~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkP--aG~V~LsLtf 139 (424)
|+..+. ..+|++||.+.+||..|. .|. |..+|.... |.+ .-+|.+.+.|
T Consensus 530 V~d~D~---~~~ddfigq~~lPv~~Lr-~Gy---R~V~L~~~~--g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDM---SEKDDFGGQTCLPVWELS-QGI---RAFPLHSRK--GEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCC---CCCCcEEEEEEcchhhhh-Ccc---ceEEccCCC--cCCCCCeeEEEEEEe
Confidence 876322 235999999999999984 454 567886653 332 2345444443
No 105
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.82 E-value=5.2e-08 Score=104.89 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=81.8
Q ss_pred ceEEEEEEeecCCCC------CCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccCCCceEEE
Q 037748 10 SGILEIFVHHARNIH------NICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCE 81 (424)
Q Consensus 10 ~GtLEVtV~SARDLK------NVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~E 81 (424)
..+|.|+|+++.++. +...++..|||++|.|.|-|. .+++|+|.++ |-||+||++|.|.|.-++=+.|+++
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEEE
Confidence 478999999999863 235567789999999999764 3678887654 7999999999999965423678999
Q ss_pred EEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 82 IWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 82 V~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
|+..+. ...|++||...+||..|. .|. |..+|...
T Consensus 547 V~d~d~---~~~ddfiGQ~~lPv~~Lr-~Gy---R~V~L~~~ 581 (598)
T PLN02230 547 VHEHDI---NEKDDFGGQTCLPVSEIR-QGI---HAVPLFNR 581 (598)
T ss_pred EEECCC---CCCCCEEEEEEcchHHhh-Ccc---ceEeccCC
Confidence 976322 236999999999999984 454 56688664
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.80 E-value=2.5e-08 Score=88.97 Aligned_cols=93 Identities=20% Similarity=0.310 Sum_probs=74.9
Q ss_pred EEEEEeecCC--CCCCCCCCC--CcceEEEEEecCCCCceeeccccCCCCC--CccCceEEEEeccc-------------
Q 037748 13 LEIFVHHARN--IHNICIYDN--QDVYAKFSLTYNPDETHSTQVINGGGKN--PEFNEKLIIKINQL------------- 73 (424)
Q Consensus 13 LEVtV~SARD--LKNVn~fgK--qDpYAvvsIs~dp~~k~sT~Vdk~GGrN--PvWNetlrF~V~~~------------- 73 (424)
|.|.|..||| +.+..+.|+ .|+|+++||.+....+++|.|+.+- .| |+||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrs-lnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRS-LDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEec-CCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 8899999999 455566776 9999999998865678999999854 44 99999999999652
Q ss_pred ----------CCCceEEEEEEeehhccccCCCccEEEEEechhhhc
Q 037748 74 ----------DGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVVG 109 (424)
Q Consensus 74 ----------~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa 109 (424)
....|.+.||..++ +..|++||++.++|..+.+
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~---~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDK---FSPDDFLGSLELDLSILPR 123 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcc---cCCCCcceEEEEEhhhccc
Confidence 13578888887543 4469999999999998873
No 107
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.74 E-value=9.5e-09 Score=107.19 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=90.3
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccC-CCceEEEEEEeeh
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLD-GAVLKCEIWMLSR 87 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~-~~~Lk~EV~~~~r 87 (424)
-.|.|+|..||+|--.+.-|=-|||+++.+-.||. .+++|++++ .--||+|||+|+|.+...+ ++.|.+|||..+|
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEecccc
Confidence 35778888999998888888999999999988764 589999998 6799999999999995332 6789999999877
Q ss_pred hccccCCCccEEEEEechhhhcCCceeeeEEEccCCC
Q 037748 88 ARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTD 124 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~D 124 (424)
.. ..++.|....-|++|+..+ .+.||.|-+-+
T Consensus 259 Ts---RNDFMGslSFgisEl~K~p--~~GWyKlLsqe 290 (683)
T KOG0696|consen 259 TS---RNDFMGSLSFGISELQKAP--VDGWYKLLSQE 290 (683)
T ss_pred cc---cccccceecccHHHHhhcc--hhhHHHHhhhh
Confidence 65 4899999999999998554 45788887643
No 108
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.2e-08 Score=107.91 Aligned_cols=124 Identities=23% Similarity=0.375 Sum_probs=98.7
Q ss_pred CcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee-
Q 037748 8 EFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS- 86 (424)
Q Consensus 8 ~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~- 86 (424)
.-..-+.+||..|.+|.-.+.-||-|||+.+.++. ++++|++++ |--||+|||+|+|..... ...+++.||..+
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~k---tkrrtrti~-~~lnpvw~ekfhfechns-tdrikvrvwded~ 366 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK---TKRRTRTIH-QELNPVWNEKFHFECHNS-TDRIKVRVWDEDN 366 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecc---cchhhHhhh-hccchhhhhheeeeecCC-CceeEEEEecCcc
Confidence 34567889999999999999999999999998865 799999998 789999999999999765 446888999743
Q ss_pred ----hhcccc---CCCccEEEEEechhhhcCCceeeeEEEcc-CCCCCCCCceEEEEEEEEe
Q 037748 87 ----RARNYM---EDQLLGFALVPISQVVGNGKVVTQDYNLS-STDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 87 ----r~~~~l---~D~lIG~a~VPL~dlLa~G~~~~~~f~Ls-s~DlfgkPaG~V~LsLtf~ 140 (424)
+.+.-| .|+++|...|-+..| .|. ++.||-|- ++|.+ --.|-|+|.+++.
T Consensus 367 dlksklrqkl~resddflgqtvievrtl--sge-mdvwynlekrtdks-avsgairlhisve 424 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTL--SGE-MDVWYNLEKRTDKS-AVSGAIRLHISVE 424 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEec--ccc-hhhhcchhhccchh-hccceEEEEEEEE
Confidence 111111 599999999988887 565 88999994 46644 4468888777764
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.60 E-value=1.3e-07 Score=106.92 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=98.6
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehh
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRA 88 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~ 88 (424)
-.|.|+|++.+|-||++++.-+.-||||++-|++. .-++|++++ -+-||+|||.+.+.|..-..-.+.+.++..++.
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k--~vyktkv~K-ktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEK--SVYKTKVVK-KTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecce--ecccccchh-ccCCCCccccceEeeeccccceEEEEEeecccC
Confidence 47999999999999999999999999999999773 367778877 579999999999999632134566666665555
Q ss_pred ccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEecCC
Q 037748 89 RNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNTPL 143 (424)
Q Consensus 89 ~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~~~ 143 (424)
.. +++||.|.++|..|...|. .....+|.+.- ++.-.|.+++...|+...
T Consensus 1115 ~k---nd~lg~~~idL~~l~~~~~-~n~~i~ldgk~-~~~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038 1115 EK---NDLLGTAEIDLSKLEPGGT-TNSNIPLDGKT-FIVLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred CC---ccccccccccHhhcCcCCc-cceeeeccCcc-eEecccEeecceecchhh
Confidence 53 9999999999999986655 54566776653 456677777777776543
No 110
>PLN02352 phospholipase D epsilon
Probab=98.58 E-value=4.1e-07 Score=100.13 Aligned_cols=116 Identities=15% Similarity=0.216 Sum_probs=83.6
Q ss_pred cceEEEEEEeecCCCCC------CCCCCCCcceEEEEEecCCCCce-eeccccCCCCCCccCceEEEEecccCCCceEEE
Q 037748 9 FSGILEIFVHHARNIHN------ICIYDNQDVYAKFSLTYNPDETH-STQVINGGGKNPEFNEKLIIKINQLDGAVLKCE 81 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKN------Vn~fgKqDpYAvvsIs~dp~~k~-sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~E 81 (424)
.-|+|+|||..|+-|.. .+-++| ||||.|.|.+ .+. +| ..-.||+|||.|.+.+...-+..+.+.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~-~~y~tv~~~~---~~v~rt----~~~~~p~w~e~f~i~~ah~~~~~~~f~ 79 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGK-ATYVTIKIGN---KKVAKT----SHEYDRVWNQTFQILCAHPLDSTITIT 79 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCC-CceEEEEeCC---cEEecC----CCCCCCccccceeEEeeeecCCcEEEE
Confidence 56999999999984433 233445 9999999976 232 44 334599999999999975412445555
Q ss_pred EEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCC-ce-EEEEEEEEecC
Q 037748 82 IWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSP-AG-TVKLSLSVNTP 142 (424)
Q Consensus 82 V~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkP-aG-~V~LsLtf~~~ 142 (424)
| + + +-.+||.|.||+.+|+.-+...++||+|-..+ |+| +| .|+|+|.|.+.
T Consensus 80 v--k----~--~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 80 L--K----T--KCSILGRFHIQAHQIVTEASFINGFFPLIMEN--GKPNPELKLRFMLWFRPA 132 (758)
T ss_pred E--e----c--CCeEEEEEEEEHHHhhCCCcccceEEEcccCC--CCCCCCCEEEEEEEEEEh
Confidence 4 2 2 47899999999999984323288999998764 444 44 99999999753
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.47 E-value=1.2e-06 Score=95.98 Aligned_cols=120 Identities=17% Similarity=0.311 Sum_probs=87.9
Q ss_pred EEEEEEeecCCC-CC--CCCC-CCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEe
Q 037748 12 ILEIFVHHARNI-HN--ICIY-DNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWML 85 (424)
Q Consensus 12 tLEVtV~SARDL-KN--Vn~f-gKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~ 85 (424)
+|-|.|+++.++ ++ .+.| .--|||+.|.|.|-|. .+++|+|.++.|=||.|+|+|.|.|..++=+-++++|+..
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999943 33 2333 3689999999999765 4889999999999999999999999765335679999763
Q ss_pred ehhccccC-CCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 86 SRARNYME-DQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 86 ~r~~~~l~-D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
++.+ |+++|...+||..|. .|. |-.+|-+.+.-.-..-+|.+.+++
T Consensus 697 ----d~~~~ddF~GQ~tlP~~~L~-~Gy---RhVpL~~~~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 ----DYIGKDDFIGQTTLPVSELR-QGY---RHVPLLSREGEALSSASLFVRIAI 743 (746)
T ss_pred ----CCCCcccccceeeccHHHhh-Cce---eeeeecCCCCccccceeEEEEEEE
Confidence 4444 999999999999984 454 556776642111223455555554
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=1.6e-05 Score=82.52 Aligned_cols=93 Identities=24% Similarity=0.377 Sum_probs=72.7
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEe
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWML 85 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~ 85 (424)
.|.|.|.|..||+|+..+.=+--|||+++++-.+. ..+++|. .+++=.||+|||+|.|.|+ ......+.++||..
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~-~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTS-VKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeee-cccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 69999999999999999988899999999998754 2355544 4568899999999999995 44345678888774
Q ss_pred ehhccccCCCccEEEEEechh
Q 037748 86 SRARNYMEDQLLGFALVPISQ 106 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~d 106 (424)
.+ +...++||.+.+....
T Consensus 376 d~---~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DT---LGSNDLIGRCILGSDS 393 (421)
T ss_pred cc---ccccceeeEEEecCCC
Confidence 32 3346699988887764
No 113
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.03 E-value=2e-05 Score=87.41 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=85.2
Q ss_pred CCCCCCCcce----EEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccC-ceEEEEecccC
Q 037748 2 DSFNDSEFSG----ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFN-EKLIIKINQLD 74 (424)
Q Consensus 2 ~~~~~~~~~G----tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWN-etlrF~V~~~~ 74 (424)
|-+|++.+.| +|.|.|+.||-|.+.. -+--.|+++|.|-|.+ ..+++|.++.+.|-||+|| ++|+|.|-.+.
T Consensus 1052 dP~n~e~~~~l~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe 1130 (1267)
T KOG1264|consen 1052 DPMNPESQRGLLPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE 1130 (1267)
T ss_pred CCCChHHhccccceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc
Confidence 4456655555 5678899999999544 3346799999999864 4588999999999999999 99999996653
Q ss_pred CCceEEEEEEeehhccccC-CCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 75 GAVLKCEIWMLSRARNYME-DQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 75 ~~~Lk~EV~~~~r~~~~l~-D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
=+-|+++|+. +++++ ..+||.|.-||.-+- .|- |+.+|+.
T Consensus 1131 ~A~lRF~V~e----eDmfs~~~FiaqA~yPv~~ik-~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1131 FAFLRFVVYE----EDMFSDPNFLAQATYPVKAIK-SGF---RSVPLKN 1171 (1267)
T ss_pred eEEEEEEEec----ccccCCcceeeeeecchhhhh-ccc---eeeeccc
Confidence 4678999965 45443 569999999998873 333 5667765
No 114
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.65 E-value=1.8e-05 Score=86.92 Aligned_cols=126 Identities=21% Similarity=0.359 Sum_probs=87.2
Q ss_pred EEEEeecCCCCCCCCCCCCcceEEEEEecCCCCce--------ee---ccccCCC----------------CCCccCceE
Q 037748 14 EIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETH--------ST---QVINGGG----------------KNPEFNEKL 66 (424)
Q Consensus 14 EVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~--------sT---~Vdk~GG----------------rNPvWNetl 66 (424)
-|-+.-||||-+.+.-|=-||||...|-..-+.+. +- +--++|| -||+|+|+|
T Consensus 117 ~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF 196 (1103)
T KOG1328|consen 117 NISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKF 196 (1103)
T ss_pred HHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhhe
Confidence 35566799998888888889999987753210000 00 0012334 499999999
Q ss_pred EEEecccCCCceEEEEEEee--------------------------------hhcc-ccCCCccEEEEEechhhhcCCce
Q 037748 67 IIKINQLDGAVLKCEIWMLS--------------------------------RARN-YMEDQLLGFALVPISQVVGNGKV 113 (424)
Q Consensus 67 rF~V~~~~~~~Lk~EV~~~~--------------------------------r~~~-~l~D~lIG~a~VPL~dlLa~G~~ 113 (424)
.|+|+++..-.+.+.||.-+ |+.. --.|+++|-+.|||+++--+|
T Consensus 197 ~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~G-- 274 (1103)
T KOG1328|consen 197 QFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPDG-- 274 (1103)
T ss_pred eeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcch--
Confidence 99998875567888999732 1111 013999999999999997666
Q ss_pred eeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 114 VTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 114 ~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
.++||.|--+--.-+-+|-|+|-|.+..
T Consensus 275 ld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 275 LDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred HHHHhccCcccccccccceEEEEEEEee
Confidence 6799999543213467999999998853
No 115
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.64 E-value=4.2e-05 Score=87.35 Aligned_cols=108 Identities=27% Similarity=0.359 Sum_probs=84.1
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEE---ecccCCCceEEEEEE
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIK---INQLDGAVLKCEIWM 84 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~---V~~~~~~~Lk~EV~~ 84 (424)
.|+|-|-|..||+|.=..==...|||++..|-.||+ .|++|+|.+ +-+||+|||.|..+ ++..-.+.|.+.||+
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 589999999999995444334789999999988875 488999987 78999999999876 222213678999987
Q ss_pred eehhccccCCCccEEEEEechhhhcCCceeeeEEEccC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSS 122 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss 122 (424)
. ..+++..++|.+.|||.++--... ...||.|..
T Consensus 1602 ~---~~~~en~~lg~v~i~L~~~~l~kE-~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 N---GGLLENVFLGGVNIPLLKVDLLKE-SVGWYNLGA 1635 (1639)
T ss_pred c---cceeeeeeeeeeecchhhcchhhh-hcceeeccc
Confidence 3 457789999999999999852222 447999954
No 116
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.59 E-value=0.00033 Score=76.95 Aligned_cols=125 Identities=18% Similarity=0.276 Sum_probs=98.1
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcc
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARN 90 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~ 90 (424)
-.|-|.|.-||+|.....-+--||||.|-+ |..+-.+|.|.-. ---|-|-|.+.|.|+.. =..|.+=||. ++
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~l--D~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-F~~l~fYv~D----~d 76 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNL--DQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-FRYLSFYVWD----RD 76 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEee--cchhhhhhhhhhh-hcCCccccceEEecCcc-eeeEEEEEec----cc
Confidence 358899999999999998889999999977 6567788888763 46799999999999643 2345555554 34
Q ss_pred ccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEecCCC
Q 037748 91 YMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNTPLT 144 (424)
Q Consensus 91 ~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~~~p 144 (424)
+-.|+.||.+.|-=.+|-.... .+.||.|+.-|---.-+|.|+|+|.+....-
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~-~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPG-KDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred cccccccceeeeeHHHHhhCCC-CccceeccccCCChhhceeEEEEEEeccccC
Confidence 5579999999999888874443 5789999885444577999999999986543
No 117
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=1.8e-05 Score=80.40 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=95.8
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecC--CCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeeh
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYN--PDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSR 87 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~d--p~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r 87 (424)
...|..||..|++||=+.+=+.-|||+.+.|-.. ..++.+|+|.+ ++.||+||+++...-...++..++.+... .+
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~-vc 169 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKV-VC 169 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhhee-ec
Confidence 4578899999999999999999999999988542 23467777776 89999999998866532223333333322 13
Q ss_pred hcc-ccCCCccEEEEEechhhh-cCCceeeeEE----EccCCCCCC-CCceEEEEEEEEecCCCCC
Q 037748 88 ARN-YMEDQLLGFALVPISQVV-GNGKVVTQDY----NLSSTDLFH-SPAGTVKLSLSVNTPLTLN 146 (424)
Q Consensus 88 ~~~-~l~D~lIG~a~VPL~dlL-a~G~~~~~~f----~Lss~Dlfg-kPaG~V~LsLtf~~~~p~~ 146 (424)
++. +.....+|+-.|+|..|- ..++....|| +..+.|.-+ .++|.+.++|.|....+.-
T Consensus 170 dn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l 235 (362)
T KOG1013|consen 170 DNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGL 235 (362)
T ss_pred cCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCce
Confidence 333 456789999999999998 4555333333 333445455 7899999999998766543
No 118
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=97.50 E-value=0.00049 Score=74.71 Aligned_cols=121 Identities=18% Similarity=0.363 Sum_probs=96.2
Q ss_pred ceEEEEEEeecCCCCCCCCCC-CCcceEEEEEecCCCCceeeccccCCCCCCccCce-EEEEeccc--CCCceEEEEEEe
Q 037748 10 SGILEIFVHHARNIHNICIYD-NQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEK-LIIKINQL--DGAVLKCEIWML 85 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fg-KqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNet-lrF~V~~~--~~~~Lk~EV~~~ 85 (424)
.|.|-|.+..||.|+=.+.-+ --|.|+.+.+.. .+++|.|-. ---||.||.. |||.|++. .+.-|.+.|.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n---~t~ktdvf~-kslnp~wnsdwfkfevddadlqdeplqi~ll-- 75 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN---TTFKTDVFL-KSLNPQWNSDWFKFEVDDADLQDEPLQIRLL-- 75 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc---cceehhhhh-hhcCCcccccceEEecChhhhccCCeeEEEe--
Confidence 478999999999999888765 479999998877 799998876 5689999976 99999754 2456666653
Q ss_pred ehhcc-ccCCCccEEEEEechhhh---------cCCceeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 86 SRARN-YMEDQLLGFALVPISQVV---------GNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 86 ~r~~~-~l~D~lIG~a~VPL~dlL---------a~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
+++ |...+-||.+.|.|..|+ ++|.-...|||+-.+ -|--+|.|++.+++.
T Consensus 76 --d~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt--ihgirgeinvivkvd 136 (1169)
T KOG1031|consen 76 --DHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT--IHGIRGEINVIVKVD 136 (1169)
T ss_pred --cccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee--cccccceeEEEEEEe
Confidence 334 778999999999999887 123325679999766 578899999999985
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.18 E-value=0.00099 Score=73.35 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=77.6
Q ss_pred CCCcceEEEEEecCCC-CceeeccccCCCCCCccCceEEEEeccc---------------CCCceEEEEEEeehhccccC
Q 037748 30 DNQDVYAKFSLTYNPD-ETHSTQVINGGGKNPEFNEKLIIKINQL---------------DGAVLKCEIWMLSRARNYME 93 (424)
Q Consensus 30 gKqDpYAvvsIs~dp~-~k~sT~Vdk~GGrNPvWNetlrF~V~~~---------------~~~~Lk~EV~~~~r~~~~l~ 93 (424)
+-+||||++...|.-+ ...+|.+.+ -+.||.|||.|.|.+... +-..+++++|... .-...
T Consensus 149 ~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~--~~~~~ 225 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDL--NLVIN 225 (800)
T ss_pred CCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccch--hhhhh
Confidence 4699999999887422 235677666 689999999999999532 1246889999832 12345
Q ss_pred CCccEEEEEechhhhcCCceeeeEEEccCCC-----CCCCCceEEEEEEEEec
Q 037748 94 DQLLGFALVPISQVVGNGKVVTQDYNLSSTD-----LFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 94 D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~D-----lfgkPaG~V~LsLtf~~ 141 (424)
++++|++.||+..+.+.-. ...||-|...+ ..+---|-++|.+.|..
T Consensus 226 ~~FlGevrv~v~~~~~~s~-p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 226 DVFLGEVRVPVDVLRQKSS-PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hhhceeEEeehhhhhhccC-ccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 9999999999999984433 67899885422 12234688888888863
No 120
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.87 E-value=0.0026 Score=58.01 Aligned_cols=107 Identities=22% Similarity=0.392 Sum_probs=75.4
Q ss_pred EEEEEeecCCCCC-----------CCCCC--CCcceEEEEEecCCC-CceeeccccCCCCCCccCceEEEEec---c--c
Q 037748 13 LEIFVHHARNIHN-----------ICIYD--NQDVYAKFSLTYNPD-ETHSTQVINGGGKNPEFNEKLIIKIN---Q--L 73 (424)
Q Consensus 13 LEVtV~SARDLKN-----------Vn~fg--KqDpYAvvsIs~dp~-~k~sT~Vdk~GGrNPvWNetlrF~V~---~--~ 73 (424)
|.|.|+.|-+||- ++... --++|+.+.++.-|+ +.++|++.-+ -==|.||+.+-|+++ + .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 5688888888874 22222 356899999888554 5677777653 345899999999985 1 1
Q ss_pred ----------CCCceEEEEEEeehhcc-------ccCCCccEEEEEechhhhcCCceeeeEEEc
Q 037748 74 ----------DGAVLKCEIWMLSRARN-------YMEDQLLGFALVPISQVVGNGKVVTQDYNL 120 (424)
Q Consensus 74 ----------~~~~Lk~EV~~~~r~~~-------~l~D~lIG~a~VPL~dlLa~G~~~~~~f~L 120 (424)
....+-++||+..-..+ ..+|-+||.+.|||.+||..-.-...||+|
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 12467889999642222 347999999999999999332227889986
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.014 Score=64.40 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=77.0
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecC----CCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYN----PDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS 86 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~d----p~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~ 86 (424)
--+.|.|+.|.|||=-. -|--.||+.|.|-|- .+.++.|++ +.+---|.+||+|+|.+...++ --.+|+..-.
T Consensus 1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKt-KsnnWaPKyNEtF~f~Lg~e~~-Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKT-KSNNWAPKYNETFHFFLGNEGG-PEHYELQFCV 1201 (1283)
T ss_pred ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccc-cCCCcCcccCceeEEEeccCCC-CceEEEEEee
Confidence 34677889999997432 355689999999873 334666665 4577789999999999954312 2233443321
Q ss_pred hhcc-ccCCCccEEEEEechhhhcCCceeeeEEEccCC
Q 037748 87 RARN-YMEDQLLGFALVPISQVVGNGKVVTQDYNLSST 123 (424)
Q Consensus 87 r~~~-~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~ 123 (424)
++-. ..+|+.||-+.++|.++...|. ...|+||.++
T Consensus 1202 KDYCFAReDRvvGl~VlqL~~va~kGS-~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1202 KDYCFAREDRVVGLAVLQLRSVADKGS-CACWVPLGRR 1238 (1283)
T ss_pred hhheeecccceeeeeeeehhhHhhcCc-eeEeeecccc
Confidence 1111 1369999999999999998888 8889999764
No 122
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.02 E-value=0.19 Score=43.52 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=76.5
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC-CceeeccccCCCCCCccCceEEEEec-cc--CC-----CceEEE
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD-ETHSTQVINGGGKNPEFNEKLIIKIN-QL--DG-----AVLKCE 81 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~-~k~sT~Vdk~GGrNPvWNetlrF~V~-~~--~~-----~~Lk~E 81 (424)
-.+.|+++...+++. ....+.+.|-.++.. ....|.........=.||+.|.|.+. .. .+ ..+.+.
T Consensus 7 f~~~l~i~~l~~~p~-----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCC-----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 457899999998888 223333444434321 14566666667777899999999984 21 11 234444
Q ss_pred EEEeehhccccCC-CccEEEEEechhhhcC-CceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 82 IWMLSRARNYMED-QLLGFALVPISQVVGN-GKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 82 V~~~~r~~~~l~D-~lIG~a~VPL~dlLa~-G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
|+.... -+. ..||.+.|.|++.+.. .......|+|... ....-.|+|++.+..
T Consensus 82 v~~~~~----~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 82 VFEVDG----SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSE 136 (143)
T ss_pred EEEecC----CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEE
Confidence 433211 123 5899999999999954 3447789999775 244678888887763
No 123
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=95.95 E-value=0.024 Score=49.34 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=50.5
Q ss_pred CceeeccccCCCCCCccCceEEEEecc-------cCCCceEEEEEEeehhccccCCCccEEEEEechhhh-cCCceeeeE
Q 037748 46 ETHSTQVINGGGKNPEFNEKLIIKINQ-------LDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVV-GNGKVVTQD 117 (424)
Q Consensus 46 ~k~sT~Vdk~GGrNPvWNetlrF~V~~-------~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlL-a~G~~~~~~ 117 (424)
+.+.|+|.. |.||.+|.+.+|.|.- ..+..+.+||+-.. .. .-..||.|.|+|.++| ..|......
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~---d~~tla~~~i~l~~ll~~~~~~i~~~ 84 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GS---DFETLAAGQISLRPLLESNGERIHGS 84 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS----EEEEEEEEE--SHHHH--S--EEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cC---CeEEEEEEEeechhhhcCCCceEEEE
Confidence 689999999 9999999999999952 23467899998653 22 3688999999999999 666445566
Q ss_pred EEccCCCCCCCCceEEEEEEEEe
Q 037748 118 YNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 118 f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
..|.+. .+..-|.|++.+.++
T Consensus 85 ~~l~g~--~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 85 ATLVGV--SGEDFGTLEYWIRLR 105 (107)
T ss_dssp EEE-BS--SS-TSEEEEEEEEEE
T ss_pred EEEecc--CCCeEEEEEEEEEec
Confidence 666554 356889999887764
No 124
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.80 E-value=0.049 Score=61.90 Aligned_cols=118 Identities=18% Similarity=0.301 Sum_probs=82.4
Q ss_pred CcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC----CceeeccccCCCCCCccCce-EEEEecccC-CCceEEE
Q 037748 8 EFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD----ETHSTQVINGGGKNPEFNEK-LIIKINQLD-GAVLKCE 81 (424)
Q Consensus 8 ~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~----~k~sT~Vdk~GGrNPvWNet-lrF~V~~~~-~~~Lk~E 81 (424)
-..++|+|+|+|+.-|-+..+ --|+.|.+=|-|. ..++|++..+.|-||+||+. |.|.-.-.+ =+.|++-
T Consensus 700 vIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 357899999999999987653 3899998877653 47899999999999999986 666542111 2568877
Q ss_pred EEEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCC--CCCCCCceEEEEEEEEe
Q 037748 82 IWMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSST--DLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 82 V~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~--DlfgkPaG~V~LsLtf~ 140 (424)
||. + +-++||.-.+||.-| ..|. +-..|++. --..-|+=+|++.++-+
T Consensus 776 vye----E---ggK~ig~RIlpvd~l-~~GY---rhv~LRse~Nqpl~lp~Lfv~i~~kdy 825 (1189)
T KOG1265|consen 776 VYE----E---GGKFIGQRILPVDGL-NAGY---RHVCLRSESNQPLTLPALFVYIVLKDY 825 (1189)
T ss_pred eec----c---CCceeeeeccchhcc-cCcc---eeEEecCCCCCccccceeEEEEEeecc
Confidence 754 2 579999999999765 5565 23344442 11223455666666554
No 125
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.79 E-value=0.06 Score=48.12 Aligned_cols=94 Identities=23% Similarity=0.255 Sum_probs=61.9
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCC---ceeeccccCCCCCCccCceEEEEec--ccC-CCceEEEEEE
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDE---THSTQVINGGGKNPEFNEKLIIKIN--QLD-GAVLKCEIWM 84 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~---k~sT~Vdk~GGrNPvWNetlrF~V~--~~~-~~~Lk~EV~~ 84 (424)
..|.|.++...++.. +.....+.|+.+.|-++.+. .+.|+.. -++.++.|||.+.|+|. +.+ ++.|.+.||.
T Consensus 8 ~~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~-~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKKV-PFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccCC-cCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 457788888777764 22345778888877765321 2233322 23588999999999984 333 4578888887
Q ss_pred eehhccccCCCccEEEEEechhh
Q 037748 85 LSRARNYMEDQLLGFALVPISQV 107 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dl 107 (424)
.....+ ..+..||.+.+||=+-
T Consensus 86 ~~~~~~-~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGS-KKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCC-CcceEEEEEeEEeEcc
Confidence 533211 2368999999999873
No 126
>PLN02964 phosphatidylserine decarboxylase
Probab=95.71 E-value=0.016 Score=63.82 Aligned_cols=108 Identities=13% Similarity=0.249 Sum_probs=77.4
Q ss_pred CCCCcceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEE
Q 037748 5 NDSEFSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWM 84 (424)
Q Consensus 5 ~~~~~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~ 84 (424)
-.+++.|++-|||++|+ ..+ | |+|.++-- -+.+.++|.+.+ .-.||+||+.-.|-|...+....++.||.
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~~--~-~~~~~~~~--~g~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MKF--K-DKWLACVS--FGEQTFRTETSD-STDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ecccccCeEEEEeehhh----hcc--C-CcEEEEEE--ecceeeeecccc-ccCCcccchhhceEeccCCcceEEEEEEe
Confidence 34679999999999999 222 4 88876533 234788988776 67899999999999965423345777776
Q ss_pred eehhccccCCCccEEEEEechhhhcC-CceeeeEEEccCCCC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVVGN-GKVVTQDYNLSSTDL 125 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlLa~-G~~~~~~f~Lss~Dl 125 (424)
.. ++..++++|-|.++|.++... -.+..+.|.+-.+|.
T Consensus 118 ~~---~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg 156 (644)
T PLN02964 118 TN---RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS 156 (644)
T ss_pred cC---CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence 43 355699999999999999832 222445676665553
No 127
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.05 E-value=0.036 Score=48.13 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=63.8
Q ss_pred EEEeecCCCCCCCCCC-CCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEeehhccc
Q 037748 15 IFVHHARNIHNICIYD-NQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWMLSRARNY 91 (424)
Q Consensus 15 VtV~SARDLKNVn~fg-KqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~~r~~~~ 91 (424)
|||.++|||-=-+-++ .+..|++=-|+-..-..++ ..+++|-.||+|+|+|.|.|. +..+..|-+.|+.. +
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~K-sS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-~---- 76 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFK-SSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-T---- 76 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCcccc-chhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-C----
Confidence 7999999987555555 6788887666643223444 467889999999999999994 44455677777662 2
Q ss_pred cCCCccEEEEEechhh
Q 037748 92 MEDQLLGFALVPISQV 107 (424)
Q Consensus 92 l~D~lIG~a~VPL~dl 107 (424)
-..+.||.|.+.|..+
T Consensus 77 ~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 77 PRKRTIGECSLSLRTL 92 (103)
T ss_pred CccceeeEEEeecccC
Confidence 1478899999999886
No 128
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.82 E-value=0.16 Score=48.80 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=55.1
Q ss_pred ceeeccccCCCCCCccCceEEEEec--ccCCCceEEEEEEeehhccc-cCCCccEEEEEechh----hhcCCceee-eEE
Q 037748 47 THSTQVINGGGKNPEFNEKLIIKIN--QLDGAVLKCEIWMLSRARNY-MEDQLLGFALVPISQ----VVGNGKVVT-QDY 118 (424)
Q Consensus 47 k~sT~Vdk~GGrNPvWNetlrF~V~--~~~~~~Lk~EV~~~~r~~~~-l~D~lIG~a~VPL~d----lLa~G~~~~-~~f 118 (424)
..+|- +..--++|.|||++|+.|+ ...+..|.+.+++.++.+.- -....+|.+.+||-. .|.+|. .. --|
T Consensus 54 e~~S~-V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~-H~L~vY 131 (196)
T cd08694 54 EYKSV-IYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGE-HDLIVY 131 (196)
T ss_pred eEEEE-EEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCC-EEEEEE
Confidence 44444 4446689999999999995 33456788888775543220 023789999999962 456776 33 244
Q ss_pred EccCCCCCCCCceEEEEEEEEe
Q 037748 119 NLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 119 ~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
..... +-...|..+|+|-+.
T Consensus 132 K~d~~--~~~~~~~~Yl~lP~~ 151 (196)
T cd08694 132 KVDAK--KKLEDAKAYLSLPST 151 (196)
T ss_pred Eeccc--cccccccceeeCCcc
Confidence 44321 111245667776554
No 129
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=94.48 E-value=0.022 Score=63.65 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=74.3
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecC---C-CCceeeccccCCCCCCccCceEEEEeccc----CCCceEEE
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYN---P-DETHSTQVINGGGKNPEFNEKLIIKINQL----DGAVLKCE 81 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~d---p-~~k~sT~Vdk~GGrNPvWNetlrF~V~~~----~~~~Lk~E 81 (424)
.-+|.|-|+.||||--.+-=|=-|||++|.|... | -..++|+|..+ --||+|+|+|-|.|+.. .++-+.+.
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEEE
Confidence 3478899999999999998899999999999653 1 12567777764 57999999999999521 12334445
Q ss_pred EEEeehhcccc-CCCccEEEEEechhhhcCCc
Q 037748 82 IWMLSRARNYM-EDQLLGFALVPISQVVGNGK 112 (424)
Q Consensus 82 V~~~~r~~~~l-~D~lIG~a~VPL~dlLa~G~ 112 (424)
| +++++| ..++-|+|..-|.+|-|-+.
T Consensus 1025 V----MDHD~L~sNDFaGEA~L~Lg~vpGva~ 1052 (1103)
T KOG1328|consen 1025 V----MDHDYLRSNDFAGEAFLELGDVPGVAA 1052 (1103)
T ss_pred e----eccceecccccchHHHHhhCCCCCccc
Confidence 4 677866 59999999999998874433
No 130
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.87 E-value=0.28 Score=45.24 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=59.1
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCC---ceeeccccCCCCCCccCceEEEEec--ccC-CCceEEEEE
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDE---THSTQVINGGGKNPEFNEKLIIKIN--QLD-GAVLKCEIW 83 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~---k~sT~Vdk~GGrNPvWNetlrF~V~--~~~-~~~Lk~EV~ 83 (424)
...|.|.|++|.+|. ++ .-.|.|+.+.|=++.+. ...|+-.. ..++.|||.+.|+|. +.+ .+.|.+.||
T Consensus 7 ~~~~~v~i~~~~~~~-~~--~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVN-VN--DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCC-CC--CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 356889999988765 33 34688888877654221 11222222 378999999999985 333 457888888
Q ss_pred Eeehhcc-ccCCCccEEEEEechh
Q 037748 84 MLSRARN-YMEDQLLGFALVPISQ 106 (424)
Q Consensus 84 ~~~r~~~-~l~D~lIG~a~VPL~d 106 (424)
.....+. --....||.+.++|=+
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEEC
Confidence 7532111 0123569999999977
No 131
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.78 E-value=0.28 Score=45.52 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=60.9
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCC---ceeeccccCCCCCCccCceEEEEec--ccC-CCceEEEEEE
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDE---THSTQVINGGGKNPEFNEKLIIKIN--QLD-GAVLKCEIWM 84 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~---k~sT~Vdk~GGrNPvWNetlrF~V~--~~~-~~~Lk~EV~~ 84 (424)
-.+.|+|+++.+|.= --...++|+.+.|=++.+. ...|+.. -+..++.|||.|.|+|. +.+ .+.|.+.||.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~-~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEV-SGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEcccc-CCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 468899999887762 1345788888877664321 2233222 23577999999999984 433 4578888887
Q ss_pred eehhcc-------------ccCCCccEEEEEechh
Q 037748 85 LSRARN-------------YMEDQLLGFALVPISQ 106 (424)
Q Consensus 85 ~~r~~~-------------~l~D~lIG~a~VPL~d 106 (424)
-..... -..+..||.+.++|=|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 532111 1135789999999877
No 132
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.74 E-value=0.24 Score=47.31 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=41.0
Q ss_pred ceeeccccCCCCCCccCceEEEEecc--cCCCceEEEEEEeehhccccCCCccEEEEEechh
Q 037748 47 THSTQVINGGGKNPEFNEKLIIKINQ--LDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQ 106 (424)
Q Consensus 47 k~sT~Vdk~GGrNPvWNetlrF~V~~--~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~d 106 (424)
..+| ++..-=++|.|||++|+.|+. .....|.+++++.+..+.- ....+|.+.+||-+
T Consensus 54 e~~S-~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~-~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRS-FVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKG-EKKLFGFSFVPLMR 113 (189)
T ss_pred eEEE-EEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCC-CCCceEEEEEeecc
Confidence 3443 445677899999999999962 3356788888775554321 23789999999954
No 133
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=93.42 E-value=0.1 Score=55.44 Aligned_cols=125 Identities=15% Similarity=0.229 Sum_probs=81.5
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEec--CCCCceeeccccCCCCCCccCceEEEEecc---c--------CC
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTY--NPDETHSTQVINGGGKNPEFNEKLIIKINQ---L--------DG 75 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~--dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~---~--------~~ 75 (424)
.--.|+++|++.+++.=-.==.--|-|+++.... |..++.+|.|++ +-..|.|++.|++.|.. . ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3445777777777654332111234455554443 334555666665 56789999999999953 1 23
Q ss_pred CceEEEEEEeehhcccc-CCCccEEEEEechhhhcCCceeeeEEEccCCCCCCC-CceEEEEEEEEec
Q 037748 76 AVLKCEIWMLSRARNYM-EDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHS-PAGTVKLSLSVNT 141 (424)
Q Consensus 76 ~~Lk~EV~~~~r~~~~l-~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~Dlfgk-PaG~V~LsLtf~~ 141 (424)
..+++|||++- .++ .|+|+|.|.|-|.-|-..-+ .+..|+|... .| --|.|.+-+..+.
T Consensus 444 ~g~kfeifhkg---gf~rSdkl~gt~nikle~Len~ce-i~e~~~l~DG---RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 444 LGKKFEIFHKG---GFNRSDKLTGTGNIKLEILENMCE-ICEYLPLKDG---RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred cCeeEEEeecc---ccccccceeceeeeeehhhhcccc-hhhceecccc---ccccCCeeEEEEEEec
Confidence 57899998742 233 69999999999987754444 7788999653 23 3578777777764
No 134
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=93.41 E-value=0.57 Score=43.18 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCCCCCccCceEEEEeccc--CCCceEEEEEEeehhccccCCCccEEEEEechh
Q 037748 55 GGGKNPEFNEKLIIKINQL--DGAVLKCEIWMLSRARNYMEDQLLGFALVPISQ 106 (424)
Q Consensus 55 ~GGrNPvWNetlrF~V~~~--~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~d 106 (424)
..-++|.|+|++|+.|+.. ++..|.+.+++.+..+.--.+..+|.|.+||.+
T Consensus 67 yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 67 YHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred ecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3458999999999999632 355788888776554321112799999999998
No 135
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.72 E-value=0.78 Score=42.29 Aligned_cols=59 Identities=24% Similarity=0.399 Sum_probs=41.8
Q ss_pred ceeeccccCCCCCCccCceEEEEeccc--CCCceEEEEEEeehhcc--ccCCCccEEEEEechh
Q 037748 47 THSTQVINGGGKNPEFNEKLIIKINQL--DGAVLKCEIWMLSRARN--YMEDQLLGFALVPISQ 106 (424)
Q Consensus 47 k~sT~Vdk~GGrNPvWNetlrF~V~~~--~~~~Lk~EV~~~~r~~~--~l~D~lIG~a~VPL~d 106 (424)
...|.+.... ++|.|++++|+.|+.. +...|.+.+++.+..+. --....+|.|.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3344455555 9999999999999632 35678888877554431 1247889999999987
No 136
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.22 E-value=0.79 Score=43.28 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=60.0
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCC--CceeeccccCCCCCCccCceEEEEec--ccC-CCceEEEEEEe
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPD--ETHSTQVINGGGKNPEFNEKLIIKIN--QLD-GAVLKCEIWML 85 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~--~k~sT~Vdk~GGrNPvWNetlrF~V~--~~~-~~~Lk~EV~~~ 85 (424)
..+.|.|+++. +.|++.-.++.+|+.+.|=++.. ...+|.-. --+.+|.|||.|+|+|. +.+ .+.|.+.||.-
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~-~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPK-PFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeecc-CCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 46789999996 66666555677888876655321 12233322 33678999999999995 332 45788888874
Q ss_pred ehhc---ccc----------CCCccEEEEEechh
Q 037748 86 SRAR---NYM----------EDQLLGFALVPISQ 106 (424)
Q Consensus 86 ~r~~---~~l----------~D~lIG~a~VPL~d 106 (424)
.... ... .+..||-+.++|=|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred ecCcccccccccccccccccccceEEEEEEEEEc
Confidence 2111 001 26778888888766
No 137
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.99 E-value=0.57 Score=43.04 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=63.4
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCC---ceeecc---ccCCCCCCccCceEEEEec--ccC-CCceE
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDE---THSTQV---INGGGKNPEFNEKLIIKIN--QLD-GAVLK 79 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~---k~sT~V---dk~GGrNPvWNetlrF~V~--~~~-~~~Lk 79 (424)
....|.|+|.++.+|.-.-.-...|.|+.+.|-++.+. ...|+. -+.--..+.|||.+.|++. +.+ .+.|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 34568889988888776543234788998888765321 223332 2222356889999999995 332 35688
Q ss_pred EEEEEeehhcc------ccCCCccEEEEEechhh
Q 037748 80 CEIWMLSRARN------YMEDQLLGFALVPISQV 107 (424)
Q Consensus 80 ~EV~~~~r~~~------~l~D~lIG~a~VPL~dl 107 (424)
+.||.-....+ -..+..||.+.+||=|-
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 88887433210 11467899999999773
No 138
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=90.70 E-value=0.23 Score=57.13 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=78.0
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccc-cCCCCCCccCceEEEEecccCCCceEEEEEEeeh
Q 037748 9 FSGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVI-NGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSR 87 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vd-k~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r 87 (424)
.-..++|||+.|-+|.=.+.=|+-|||++|.++. .+...+.. ..+=-||+|..-|-+...-.-...|.++||.-+
T Consensus 611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D- 686 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHD- 686 (1105)
T ss_pred ceeeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEee-
Confidence 4567899999999999999999999999999976 33332222 246679999999887774332456888887631
Q ss_pred hccccCCCccEEEEEechhhh--cCCce--eeeEEEccCC
Q 037748 88 ARNYMEDQLLGFALVPISQVV--GNGKV--VTQDYNLSST 123 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~dlL--a~G~~--~~~~f~Lss~ 123 (424)
...+|..||+..|.|.+=. .-++. ..+.|.++..
T Consensus 687 --~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~ 724 (1105)
T KOG1326|consen 687 --LEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGA 724 (1105)
T ss_pred --cccccchhhceehhhhhcccCcCCcccCccceeeeecc
Confidence 2336999999999998865 22321 3346666543
No 139
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.25 E-value=0.62 Score=41.19 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=45.7
Q ss_pred cceEEEEEecCCCC----ceeeccccCCCCCCccCceEEEEec--ccC-CCceEEEEEEeehhccccCC----CccEEEE
Q 037748 33 DVYAKFSLTYNPDE----THSTQVINGGGKNPEFNEKLIIKIN--QLD-GAVLKCEIWMLSRARNYMED----QLLGFAL 101 (424)
Q Consensus 33 DpYAvvsIs~dp~~----k~sT~Vdk~GGrNPvWNetlrF~V~--~~~-~~~Lk~EV~~~~r~~~~l~D----~lIG~a~ 101 (424)
++|+.+.|-++.+. .++|+...-.-.++.|||.+.|+|. +.+ ++.|.+.||....... + ..||.+.
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~---~~~~~~~lgw~n 79 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKK---SKKKKVPLGWVN 79 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTT---T--EEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCc---cccceeEEEEEE
Confidence 46777777665322 2244444433479999999999985 333 4568888886543322 2 6899999
Q ss_pred Eechhh
Q 037748 102 VPISQV 107 (424)
Q Consensus 102 VPL~dl 107 (424)
+||=+-
T Consensus 80 ~~lFd~ 85 (142)
T PF00792_consen 80 LPLFDY 85 (142)
T ss_dssp EESB-T
T ss_pred EEeECC
Confidence 999885
No 140
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=88.59 E-value=0.12 Score=59.22 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=83.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEeccc---------CCCceEEEE
Q 037748 12 ILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQL---------DGAVLKCEI 82 (424)
Q Consensus 12 tLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~---------~~~~Lk~EV 82 (424)
-|.+++++||+|---+.-+=-||||.+..-+ +.+.|-|.+ |=-||+||+++.|.-.+. .-..+.+||
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~---qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCG---QSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhccc---ccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 3567889999999888888899999998877 677776665 889999999999986432 114567788
Q ss_pred EEeehhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEE
Q 037748 83 WMLSRARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSL 137 (424)
Q Consensus 83 ~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsL 137 (424)
+...| .+-+++.|...+--.=.++.| .-.|+++.+. +.++|.+.++.
T Consensus 283 yd~dr---~g~~ef~gr~~~~p~V~~~~p--~lkw~p~~rg---~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 283 YDLDR---SGINEFKGRKKQRPYVMVQCP--ALKWVPTMRG---AFLDGDVLIAA 329 (1105)
T ss_pred ehhhh---hchHHhhcccccceEEEecCC--ccceEEeecc---cccccchhHHH
Confidence 87544 456888998876544333433 3468999875 46778776654
No 141
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.12 E-value=1.6 Score=40.22 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCcceEEEEEecCCCC---ceeeccccCCCCCCccCceEEEEec--ccC-CCceEEEEEEeehhccccCCCccEEEEEec
Q 037748 31 NQDVYAKFSLTYNPDE---THSTQVINGGGKNPEFNEKLIIKIN--QLD-GAVLKCEIWMLSRARNYMEDQLLGFALVPI 104 (424)
Q Consensus 31 KqDpYAvvsIs~dp~~---k~sT~Vdk~GGrNPvWNetlrF~V~--~~~-~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL 104 (424)
.-|.|+.+.|=++... ...|. .+-.+..+.|||-+.|+|. +.+ ++.|.+.||..... -....||.+.+||
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~-~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~---~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTS-YKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT---GKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEcc-ccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC---CCceEEEEEEEee
Confidence 4778888877664321 11222 2345678999999999995 332 46789999874321 1367899999999
Q ss_pred hhh
Q 037748 105 SQV 107 (424)
Q Consensus 105 ~dl 107 (424)
=+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 773
No 142
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=87.88 E-value=3.3 Score=36.14 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=58.4
Q ss_pred CCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccccCCCccEEEEEechhh
Q 037748 28 IYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQV 107 (424)
Q Consensus 28 ~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dl 107 (424)
+.|.-++.|++.|.. +.=-.|.-.-=.+..||++|.|.++.. +.|.+.|+-. +-+ .+-|...+-|.|.
T Consensus 5 ~~~~~eV~avLklDn----~~VgqT~Wk~~s~q~WDQ~Fti~LdRs--RELEI~Vywr--D~R----slCav~~lrLEd~ 72 (98)
T cd08687 5 LMGCSEVSAVLKLDN----TVVGQTQWKPKSNQAWDQSFTLELERS--RELEIAVYWR--DWR----SLCAVKFLKLEDE 72 (98)
T ss_pred EecccceEEEEEEcC----eEEeeccccccccccccceeEEEeecc--cEEEEEEEEe--cch----hhhhheeeEhhhh
Confidence 445588999999954 222233333346889999999999875 6777777653 222 4567777788884
Q ss_pred hcCCceeeeEEEccCCCCCCCCceEEEEEEEE
Q 037748 108 VGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSV 139 (424)
Q Consensus 108 La~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf 139 (424)
+. |. .. .-.|+|.+..+++|
T Consensus 73 ~~-~~----~~-------~lepqg~l~~ev~f 92 (98)
T cd08687 73 RH-EV----QL-------DMEPQLCLVAELTF 92 (98)
T ss_pred cc-cc----ee-------ccccccEEEEEEEe
Confidence 32 11 11 13689999999999
No 143
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=86.87 E-value=6.3 Score=36.33 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=68.7
Q ss_pred CCcceEEEEEecCCCCceeeccccC-CCCCCccCceEEEEecccCCCceEEEEEEeehhccccCCCccEEEEEechhhh-
Q 037748 31 NQDVYAKFSLTYNPDETHSTQVING-GGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVV- 108 (424)
Q Consensus 31 KqDpYAvvsIs~dp~~k~sT~Vdk~-GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlL- 108 (424)
|-.-|++|-+.+ +.-.+|+.-.- ..-.=-||+.|++.|... -..+.++||-..+ ..+.+|+++.|||-..-
T Consensus 36 ~~~~~ikl~~N~--k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~----~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFND--KEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG----LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECC--EEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC----ccceEEEEEEeeCCCCcc
Confidence 567788887755 34445555443 444456799999999765 4689999987544 57999999999998876
Q ss_pred cCCce--eeeEEEccCCCC-------------------CCCCceEEEEEEEEecC
Q 037748 109 GNGKV--VTQDYNLSSTDL-------------------FHSPAGTVKLSLSVNTP 142 (424)
Q Consensus 109 a~G~~--~~~~f~Lss~Dl-------------------fgkPaG~V~LsLtf~~~ 142 (424)
..+.. ...+|+.++.-. .....|.|.++++|...
T Consensus 109 ~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~ 163 (168)
T PF15625_consen 109 HTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVG 163 (168)
T ss_pred cccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCC
Confidence 22221 345665544211 11236777777777643
No 144
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=86.83 E-value=14 Score=34.66 Aligned_cols=132 Identities=17% Similarity=0.262 Sum_probs=83.3
Q ss_pred ceEEEEEEeecCCCCC-CCCC-CCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccC-CC------ce--
Q 037748 10 SGILEIFVHHARNIHN-ICIY-DNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLD-GA------VL-- 78 (424)
Q Consensus 10 ~GtLEVtV~SARDLKN-Vn~f-gKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~-~~------~L-- 78 (424)
.=.|-|.|..+|-.=+ +... +.++--..|.|+.. ++|++|+... .-.+|.|++.|.|.+.... +. .+
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~-~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR-GQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec-CceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 3456677777764222 2211 56666666666653 4899988887 8899999999999996321 10 01
Q ss_pred --EEEEEEeehhccccCCCccEEEEEechhhhcCCce-eeeEEEccCCC-CCCCCceEEEEEEEEecCCC
Q 037748 79 --KCEIWMLSRARNYMEDQLLGFALVPISQVVGNGKV-VTQDYNLSSTD-LFHSPAGTVKLSLSVNTPLT 144 (424)
Q Consensus 79 --k~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~~-~~~~f~Lss~D-lfgkPaG~V~LsLtf~~~~p 144 (424)
-++|.+. +.+..+.-.++|.-.+.=..+|..|.. ..-..+|.... ...-|+|.|+|.|.+.+..+
T Consensus 86 ~~pihivli-~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 86 SDPIHIVLI-RTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred CCceEEEEE-EecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 2234332 332333448999999999999955541 23445554421 12358999999999987654
No 145
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=86.59 E-value=10 Score=39.42 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=85.6
Q ss_pred EEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecc-------cCCCceEEEEEEe
Q 037748 13 LEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQ-------LDGAVLKCEIWML 85 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~-------~~~~~Lk~EV~~~ 85 (424)
+-|.|+.+|+.+.. -++...+..++.+ +...|. -..+...|.||..|-..++. ..+.-+|++.|--
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng---~~l~TD-pv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNG---ESLETD-PVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCC---ceeeec-CCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 45788889988877 4788888888877 567766 44688899999999999852 2345677776542
Q ss_pred ehhccccCCCccEEEEEechhhh--cCC--ceeeeEEEccCC-CCCCCCceEEEEEEEEecCC
Q 037748 86 SRARNYMEDQLLGFALVPISQVV--GNG--KVVTQDYNLSST-DLFHSPAGTVKLSLSVNTPL 143 (424)
Q Consensus 86 ~r~~~~l~D~lIG~a~VPL~dlL--a~G--~~~~~~f~Lss~-DlfgkPaG~V~LsLtf~~~~ 143 (424)
. .....-..||.+.+||.-++ ..+ ....+||+|-+. ..+.+.+=.|.|.|+.....
T Consensus 75 ~--~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 75 D--GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred c--CCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 2 11235688999999999983 233 225689999653 12444455788888887544
No 146
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.36 E-value=2.8 Score=35.40 Aligned_cols=71 Identities=23% Similarity=0.175 Sum_probs=42.7
Q ss_pred EEEEEeecCCCCCCCCCCCC-cceEEEEEecCCCC---ceeeccccCCCCCCccCceEEEEec--ccC-CCceEEEEEEe
Q 037748 13 LEIFVHHARNIHNICIYDNQ-DVYAKFSLTYNPDE---THSTQVINGGGKNPEFNEKLIIKIN--QLD-GAVLKCEIWML 85 (424)
Q Consensus 13 LEVtV~SARDLKNVn~fgKq-DpYAvvsIs~dp~~---k~sT~Vdk~GGrNPvWNetlrF~V~--~~~-~~~Lk~EV~~~ 85 (424)
+.+++..+.++ ++.+-+.+ |.|+.+.|=++.+. ...|+ .+.+...+.|||-+.|+|. +.+ .+.|.+.||.-
T Consensus 13 ~~~~~~~~~~~-~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~-~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGI-PLNWSRDYSDLYVEIQLYHGGKLLCLPVSTS-YKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCC-CcccccCcceEEEEEEEEECCEEccCcEEec-ccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 44555555544 22223334 88988887664321 22333 3345666999999999985 332 45788888763
No 147
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=85.37 E-value=2 Score=46.98 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=58.5
Q ss_pred EeecCCCCCCCCCCCCcceEEEEEecCC---CCceeeccccCCCCCCccCceEEEEeccc----CCCceEEEEEEeehhc
Q 037748 17 VHHARNIHNICIYDNQDVYAKFSLTYNP---DETHSTQVINGGGKNPEFNEKLIIKINQL----DGAVLKCEIWMLSRAR 89 (424)
Q Consensus 17 V~SARDLKNVn~fgKqDpYAvvsIs~dp---~~k~sT~Vdk~GGrNPvWNetlrF~V~~~----~~~~Lk~EV~~~~r~~ 89 (424)
.+.|+.|-+.++|+|.|||..+.=..+. ..-++|-+.+ .=.||.|-. |++.+... +...+.+++|+-+...
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVK-NTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceec-cCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 3457999999999999999988665422 2244555544 567999954 34444321 1345666666532221
Q ss_pred cccCCCccEEEEEechhhhc
Q 037748 90 NYMEDQLLGFALVPISQVVG 109 (424)
Q Consensus 90 ~~l~D~lIG~a~VPL~dlLa 109 (424)
.+++||.+..++.++..
T Consensus 220 ---~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 ---KHDLIGKFQTTLSELQE 236 (529)
T ss_pred ---CcCceeEecccHHHhcc
Confidence 25999999999999975
No 148
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=83.53 E-value=2.4 Score=40.45 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=41.9
Q ss_pred ceeeccccCCCCCCccCceEEEEecc-c-CCCceEEEEEEeehhcc------ccCCCccEEEEEechh
Q 037748 47 THSTQVINGGGKNPEFNEKLIIKINQ-L-DGAVLKCEIWMLSRARN------YMEDQLLGFALVPISQ 106 (424)
Q Consensus 47 k~sT~Vdk~GGrNPvWNetlrF~V~~-~-~~~~Lk~EV~~~~r~~~------~l~D~lIG~a~VPL~d 106 (424)
...|.|.... ++|.|++.+++.++- . +...|.+.+++.++... --....+|.+.+||-.
T Consensus 57 ~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4455665544 999999999999962 2 25678888888664311 1135789999999976
No 149
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=82.40 E-value=2.6 Score=39.92 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=38.5
Q ss_pred CCCCCCccCceEEEEeccc--CCCceEEEEEEeehhccc---cCCCccEEEEEechh
Q 037748 55 GGGKNPEFNEKLIIKINQL--DGAVLKCEIWMLSRARNY---MEDQLLGFALVPISQ 106 (424)
Q Consensus 55 ~GGrNPvWNetlrF~V~~~--~~~~Lk~EV~~~~r~~~~---l~D~lIG~a~VPL~d 106 (424)
..-++|.|++.+++.++.. +...|.+++++.++.+.- -....||.+.+||-+
T Consensus 62 yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 62 YHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred EeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 3568999999999999632 356788999886654321 124679999999976
No 150
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.19 E-value=5.3 Score=41.73 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=62.1
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCcceEEEEEecCC--CCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeeh
Q 037748 10 SGILEIFVHHARNIHNICIYDNQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSR 87 (424)
Q Consensus 10 ~GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r 87 (424)
..-|-|+++.+++|--.+-=+--|||+..++..+- .-+++|++.+. =.||+||+.|-|.+... +. +++.|-+.
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pg-dL-a~~kv~ls-- 306 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPG-DL-AYKKVALS-- 306 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCcc-ch-hcceEEEe--
Confidence 45578999999999988888899999999997432 23778888774 56999999999999643 22 33333221
Q ss_pred hccccCCCccEEEEEechh
Q 037748 88 ARNYMEDQLLGFALVPISQ 106 (424)
Q Consensus 88 ~~~~l~D~lIG~a~VPL~d 106 (424)
.+|+.+|.-.+++--
T Consensus 307 ----vgd~~~G~s~d~~GG 321 (362)
T KOG1013|consen 307 ----VGDYDIGKSNDSIGG 321 (362)
T ss_pred ----ecccCCCcCccCCCc
Confidence 146667755554433
No 151
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=71.57 E-value=26 Score=39.86 Aligned_cols=125 Identities=17% Similarity=0.187 Sum_probs=90.9
Q ss_pred eEEEEEEeecCCCCCCCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhcc
Q 037748 11 GILEIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARN 90 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~ 90 (424)
=.|||.|---.+||.+-. .-=|||...+.| .+ -.++..-...|.|...=-|+-..+ -+.++++++-.+..--
T Consensus 341 ~smevvvmevqglksvap--nrivyctmeveg---ek--lqtdqaeaskp~wgtqgdfstthp-lpvvkvklftestgvl 412 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAP--NRIVYCTMEVEG---EK--LQTDQAEASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGVL 412 (1218)
T ss_pred eeeeEEEeeeccccccCC--CeeEEEEEEecc---cc--cccchhhhcCCCCCcCCCcccCCC-CceeEEEEEeecceeE
Confidence 468999999999999863 334899998876 33 457888889999998887887665 6788998887544333
Q ss_pred ccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEecCCCCCCC
Q 037748 91 YMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNTPLTLNPP 148 (424)
Q Consensus 91 ~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~~~p~~~~ 148 (424)
.|+|+.+|++.+.-..- ..+ ...|+.+.-+ +..+--.+.+.|+.+-..|.++-
T Consensus 413 aledkelgrvil~ptpn--s~k-s~ewh~mtvp--knsqdqdlkiklavrmdkp~nmk 465 (1218)
T KOG3543|consen 413 ALEDKELGRVILQPTPN--SAK-SPEWHTMTVP--KNSQDQDLKIKLAVRMDKPPNMK 465 (1218)
T ss_pred EeechhhCeEEEecCCC--CcC-CccceeeecC--CCCcCccceEEEEEeccCCCccc
Confidence 56899999997754332 122 4467776555 34566778889999888887754
No 152
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=68.97 E-value=7 Score=41.17 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=32.8
Q ss_pred ccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEec
Q 037748 96 LLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 96 lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~~ 141 (424)
+||.+.|||..++..|...++||++....-...-.|.+ |.+.|..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEeee
Confidence 58999999999998887688999998743233345666 4555543
No 153
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=59.78 E-value=28 Score=30.03 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCCccEEEEEechhhh----cC-------Cc--eeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 93 EDQLLGFALVPISQVV----GN-------GK--VVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 93 ~D~lIG~a~VPL~dlL----a~-------G~--~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
..++||++.|+|.+++ ++ .. .....|+|... -+.+.|.|.|.+.+.
T Consensus 46 ~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~--~~~~~G~I~l~iRLs 104 (112)
T PF14924_consen 46 PPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDE--NGNPVGEISLYIRLS 104 (112)
T ss_pred ccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecC--CCceeeeEEEEEEEe
Confidence 5789999999999988 11 11 13458999765 468999999888764
No 154
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=59.43 E-value=24 Score=37.18 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=72.6
Q ss_pred cceEEEEEEeecCCCCCCCCCC--CCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee
Q 037748 9 FSGILEIFVHHARNIHNICIYD--NQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS 86 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fg--KqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~ 86 (424)
..|+|-|++...|+|+=..--- .-|-|||+.. |.+.+.+|.| +.+|.-=.|.|.|++.|... ..+.+-||-+.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~v-rs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~ 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRV-RSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWP 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeee--cccCcccccc-ccCCCCccchhhceeecccc--eeeeEEEeecC
Confidence 4699999999999998655311 3578999966 5556666554 56889999999999999654 35555555432
Q ss_pred hhccccCCCccEEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEEEe
Q 037748 87 RARNYMEDQLLGFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLSVN 140 (424)
Q Consensus 87 r~~~~l~D~lIG~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLtf~ 140 (424)
--++ .+|--...+.+.-++.. . .++.+-| +-.|+|.+.|.+-|.
T Consensus 124 pq~R---HKLC~~g~l~~~~v~rq-s-pd~~~Al-----~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 124 PQRR---HKLCHLGLLEAFVVDRQ-S-PDRVVAL-----YLEPRGQPPLRLPLA 167 (442)
T ss_pred chhh---ccccccchhhhhhhhhc-C-Ccceeee-----ecccCCCCceecccC
Confidence 2221 22211112222222211 1 2344444 347889999999886
No 155
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=55.52 E-value=6.8 Score=36.16 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=22.2
Q ss_pred ccccCceeecchhhHHHHHHHHHHHHHHHHHHH
Q 037748 335 VFSAPMGTINLEAEQSAMQQQIVDMYMRSMQQF 367 (424)
Q Consensus 335 ~~~~P~~~vn~e~E~~~~QqqIvdMYmkSMQQF 367 (424)
+|..=+-+--=|.|+++.|-|||+||.|=+-+|
T Consensus 37 lFl~iLknwkEesekKIi~SqIVs~Y~kiFe~~ 69 (138)
T PF00714_consen 37 LFLDILKNWKEESEKKIIQSQIVSFYLKIFENL 69 (138)
T ss_dssp SSHHHHHHTTTCCCCHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHhhhhhccchhhHHHHHHHHHHHHHHHc
Confidence 443323333346789999999999999865443
No 156
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=48.93 E-value=1.6e+02 Score=32.10 Aligned_cols=131 Identities=15% Similarity=0.224 Sum_probs=78.3
Q ss_pred ceEEEEEEee---cCCCCC-CCCCCCCcceEEEEEecCCCCceeeccccCCCCCC-c-cCceEEEEeccc-------C--
Q 037748 10 SGILEIFVHH---ARNIHN-ICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNP-E-FNEKLIIKINQL-------D-- 74 (424)
Q Consensus 10 ~GtLEVtV~S---ARDLKN-Vn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNP-v-WNetlrF~V~~~-------~-- 74 (424)
+|.|-+.+-. ++-... |..-+... ||+|+|.+-|-++..-+.+..-+.+| . -+---.|.++.. .
T Consensus 11 Vg~LaLk~P~~~~~~~a~sgvhpssspC-fC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~ 89 (460)
T PF06219_consen 11 VGNLALKIPSSSASKSAGSGVHPSSSPC-FCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPC 89 (460)
T ss_pred ecceeecCCCCcCCCCCcCccccCCCCe-EEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCc
Confidence 4556666632 233333 22233444 99999999888888888888777775 2 222234666421 0
Q ss_pred ----CCceEEEEEEeehhc--cc-cCCCccEEEEEechhhhcCCce---eeeEEEccCCC--CCCCCceEEEEEEEEec
Q 037748 75 ----GAVLKCEIWMLSRAR--NY-MEDQLLGFALVPISQVVGNGKV---VTQDYNLSSTD--LFHSPAGTVKLSLSVNT 141 (424)
Q Consensus 75 ----~~~Lk~EV~~~~r~~--~~-l~D~lIG~a~VPL~dlLa~G~~---~~~~f~Lss~D--lfgkPaG~V~LsLtf~~ 141 (424)
...|++.||--.+-. .+ ..-++||.+.|||.--.+.|+. +..|..|.... ...++...|||.+...+
T Consensus 90 f~~~~~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 90 FYSPRPCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred cccCCceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 135777777632211 12 3569999999999843377775 34599886642 11235677787777654
No 157
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.85 E-value=31 Score=36.80 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=68.4
Q ss_pred cceEEEEEEeecCCCCCCCCCC-CCcceEEEEEecCC--CCceeeccccCCCCCCccCce-EEEEecccCCCceEEEEEE
Q 037748 9 FSGILEIFVHHARNIHNICIYD-NQDVYAKFSLTYNP--DETHSTQVINGGGKNPEFNEK-LIIKINQLDGAVLKCEIWM 84 (424)
Q Consensus 9 ~~GtLEVtV~SARDLKNVn~fg-KqDpYAvvsIs~dp--~~k~sT~Vdk~GGrNPvWNet-lrF~V~~~~~~~Lk~EV~~ 84 (424)
-+|.|||-||.||+|--.---. -.+||++|.+=... ..+.+|+..+. +.+.|++- +-|.-... +..|.+.+|=
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k--T~~plyqq~l~f~~sp~-~k~Lq~tv~g 343 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK--TLDPLYQQQLSFDQSPP-GKYLQGTVWG 343 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc--cCchhhhhhhhhccCCC-ccEEEEEEec
Confidence 4799999999999996432221 47999999886542 23666666663 34556544 44444333 6678888875
Q ss_pred eehhccccCCCccEEEEEechhhh-cCCceeeeEEEccC
Q 037748 85 LSRARNYMEDQLLGFALVPISQVV-GNGKVVTQDYNLSS 122 (424)
Q Consensus 85 ~~r~~~~l~D~lIG~a~VPL~dlL-a~G~~~~~~f~Lss 122 (424)
.. . +.-.+-+.|-+.|=|.||= ..-- ...||+|-.
T Consensus 344 dy-g-Rmd~k~fmg~aqi~l~eL~ls~~~-~igwyKlfg 379 (405)
T KOG2060|consen 344 DY-G-RMDHKSFMGVAQIMLDELNLSSSP-VIGWYKLFG 379 (405)
T ss_pred cc-c-ccchHHHhhHHHHHhhhhcccccc-ceeeeeccC
Confidence 42 1 1114677888888888874 2212 557998843
No 158
>PRK10301 hypothetical protein; Provisional
Probab=35.19 E-value=57 Score=29.00 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=32.6
Q ss_pred EEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEE
Q 037748 98 GFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLS 138 (424)
Q Consensus 98 G~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLt 138 (424)
-...|||.+-|..|. +...|.+-+.| .|.-.|.+.++++
T Consensus 86 ~~~~v~l~~~L~~G~-YtV~Wrvvs~D-GH~~~G~~~F~V~ 124 (124)
T PRK10301 86 KQLIVPLADSLKPGT-YTVDWHVVSVD-GHKTKGHYTFSVK 124 (124)
T ss_pred cEEEEECCCCCCCcc-EEEEEEEEecC-CCccCCeEEEEEC
Confidence 347899988888898 99888988888 6888999998863
No 159
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=30.47 E-value=63 Score=27.01 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=29.2
Q ss_pred EEEEEechhhhcCCceeeeEEEccCCCCCCCCceEEEEEEE
Q 037748 98 GFALVPISQVVGNGKVVTQDYNLSSTDLFHSPAGTVKLSLS 138 (424)
Q Consensus 98 G~a~VPL~dlLa~G~~~~~~f~Lss~DlfgkPaG~V~LsLt 138 (424)
-...|+|..-|..|. +...|.+-+.| .|.-.|.+.++++
T Consensus 59 ~~~~~~l~~~l~~G~-YtV~wrvvs~D-GH~~~G~~~F~V~ 97 (97)
T PF04234_consen 59 KTLTVPLPPPLPPGT-YTVSWRVVSAD-GHPVSGSFSFTVK 97 (97)
T ss_dssp TEEEEEESS---SEE-EEEEEEEEETT-SCEEEEEEEEEE-
T ss_pred eEEEEECCCCCCCce-EEEEEEEEecC-CCCcCCEEEEEEC
Confidence 377888988888888 88888887777 6888999998874
No 160
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=30.21 E-value=5.8e+02 Score=26.74 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=56.9
Q ss_pred eEEEEEEeecCCCCCCC---CCCC---CcceEEEEEecCCCCceeeccccCCCCCCcc--CceEEEEeccc---------
Q 037748 11 GILEIFVHHARNIHNIC---IYDN---QDVYAKFSLTYNPDETHSTQVINGGGKNPEF--NEKLIIKINQL--------- 73 (424)
Q Consensus 11 GtLEVtV~SARDLKNVn---~fgK---qDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvW--NetlrF~V~~~--------- 73 (424)
=+|.|++..|++|...- +=++ -..|...+|=|+. -|.....-=.+|.| ++...|.|...
T Consensus 192 FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~----Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~ 267 (340)
T PF12416_consen 192 FVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND----VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQ 267 (340)
T ss_pred EEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE----eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHh
Confidence 36889999999998872 1123 3556666665531 11122223334544 33343555321
Q ss_pred CCCceEEEEEEeehhccccCCCccEEEEEechhhhcCCc------e--eeeEEEccCC
Q 037748 74 DGAVLKCEIWMLSRARNYMEDQLLGFALVPISQVVGNGK------V--VTQDYNLSST 123 (424)
Q Consensus 74 ~~~~Lk~EV~~~~r~~~~l~D~lIG~a~VPL~dlLa~G~------~--~~~~f~Lss~ 123 (424)
....|.+.+.+ +++.||.+.|||..+|..+. . .++.|.|.++
T Consensus 268 ~~~~L~I~Lc~--------g~~~Lg~~~v~l~~Ll~~~~~~~~~~~~~~eg~F~l~~~ 317 (340)
T PF12416_consen 268 QIPKLQIHLCC--------GNQSLGSTSVPLQPLLPKDSLEFNNSPVIIEGAFPLNPP 317 (340)
T ss_pred hCCCeEEEEee--------CCcEEEEEEEEhhhccCCCcccccCCceeecceEeecCC
Confidence 11334443322 69999999999999994322 1 3457877664
No 161
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=29.59 E-value=72 Score=37.31 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=54.8
Q ss_pred CcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEeehhccccC-CCccEEEEEechhhhcC
Q 037748 32 QDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLSRARNYME-DQLLGFALVPISQVVGN 110 (424)
Q Consensus 32 qDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~r~~~~l~-D~lIG~a~VPL~dlLa~ 110 (424)
+++|+.+.|... --.+|+...+-=++|.|.+.+.+..... ...+.+.+ ...+..+ -+.+|.+.+|...++..
T Consensus 138 ~e~Ylt~~l~~~--~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~----~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKA--RYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRV----KGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeechh--hhhchhhhhcccccchhhhhcccccccc-ccEEEEee----cCCccccceeEEEEeccchhhhhcc
Confidence 589999988652 2345566666668999999986666433 22222222 3334455 77889999999888843
Q ss_pred CceeeeEEEccCCC
Q 037748 111 GKVVTQDYNLSSTD 124 (424)
Q Consensus 111 G~~~~~~f~Lss~D 124 (424)
....+||++---|
T Consensus 211 -~~~~~~~~Il~~d 223 (887)
T KOG1329|consen 211 -HRIGGWFPILDND 223 (887)
T ss_pred -ccccceeeeeccC
Confidence 3256777775543
No 162
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=29.44 E-value=94 Score=34.47 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=56.2
Q ss_pred CCCCCCCCCCcceEEEEEecCCCC----------------ceeeccccCCCCCCccCceEEEEecccCCCceEEEEEEee
Q 037748 23 IHNICIYDNQDVYAKFSLTYNPDE----------------THSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCEIWMLS 86 (424)
Q Consensus 23 LKNVn~fgKqDpYAvvsIs~dp~~----------------k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~EV~~~~ 86 (424)
|.+.++++|.|+-|.+.-...++. .-+|-++ .+=.||.|-++|.+......-+.+++++++..
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i-~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~ 80 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVI-RNVLNPFFTKKFLLQYRFEKVQLLRFEVYDID 80 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeee-eccCCccceeeechhheeeeeeeEEEEEeecC
Confidence 456678889999888755321111 1133333 35679999888766553211367888888754
Q ss_pred hhc-cccCCCccEEEEEechhhhcC
Q 037748 87 RAR-NYMEDQLLGFALVPISQVVGN 110 (424)
Q Consensus 87 r~~-~~l~D~lIG~a~VPL~dlLa~ 110 (424)
... .+...+++|++.--|..++..
T Consensus 81 ~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 81 SRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred CccCCcchhcccceeeeehhhhhhh
Confidence 432 355789999999999988843
No 163
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.11 E-value=16 Score=41.54 Aligned_cols=83 Identities=16% Similarity=0.283 Sum_probs=58.8
Q ss_pred CCCcceEEEEEEeecCCCCC----CCCCCCCcceEEEEEecCCCCceeeccccCCCCCCccCceEEEEecccCCCceEEE
Q 037748 6 DSEFSGILEIFVHHARNIHN----ICIYDNQDVYAKFSLTYNPDETHSTQVINGGGKNPEFNEKLIIKINQLDGAVLKCE 81 (424)
Q Consensus 6 ~~~~~GtLEVtV~SARDLKN----Vn~fgKqDpYAvvsIs~dp~~k~sT~Vdk~GGrNPvWNetlrF~V~~~~~~~Lk~E 81 (424)
.+++.|+.=+++++|.++.+ +...-|++++|..+++- +.++|.... --.+|+||+.+ |.+. .+
T Consensus 275 ~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~---~~frt~~~~-~~e~piyNe~~-~E~~-------~F- 341 (975)
T KOG2419|consen 275 ADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGE---QTFRTEISD-DTEKPIYNEDE-REDS-------DF- 341 (975)
T ss_pred cchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecch---hhhhhhhhc-ccccccccccc-cccc-------cc-
Confidence 45677888888899988854 33334899999887765 677877654 57899999984 3321 11
Q ss_pred EEEeehhccccCCCccEEEEEechh
Q 037748 82 IWMLSRARNYMEDQLLGFALVPISQ 106 (424)
Q Consensus 82 V~~~~r~~~~l~D~lIG~a~VPL~d 106 (424)
...++++-++||.+...|.+
T Consensus 342 -----qsn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 342 -----QSNRYLGNKIVGYCELDLND 361 (975)
T ss_pred -----hhhHHHhhhccccccccccc
Confidence 12346678888999888888
No 164
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=22.79 E-value=5.2e+02 Score=23.73 Aligned_cols=83 Identities=16% Similarity=0.378 Sum_probs=53.8
Q ss_pred EEeecCCCCCCCCCCCCcceEEEEEecCC-------CC-ceeeccccCC----CCCCccCceEEEEecc--cCC-CceEE
Q 037748 16 FVHHARNIHNICIYDNQDVYAKFSLTYNP-------DE-THSTQVINGG----GKNPEFNEKLIIKINQ--LDG-AVLKC 80 (424)
Q Consensus 16 tV~SARDLKNVn~fgKqDpYAvvsIs~dp-------~~-k~sT~Vdk~G----GrNPvWNetlrF~V~~--~~~-~~Lk~ 80 (424)
.|.+|.+ |...+.||+-.|...+ .. .-.|++++.+ +..=+||..|-+.... ..+ +.|.+
T Consensus 7 ~I~~a~~------f~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEG------FEEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEEC------CCCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 4567774 4445668888887632 23 4567777643 4667899998888742 212 57888
Q ss_pred EEEEeehhccccCCCccEEEEEechhh
Q 037748 81 EIWMLSRARNYMEDQLLGFALVPISQV 107 (424)
Q Consensus 81 EV~~~~r~~~~l~D~lIG~a~VPL~dl 107 (424)
+||-.+. +-.+++.|.+.+.|.--
T Consensus 81 ~V~~~D~---~gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 81 QVYSLDS---WGRDRVEGYGFCHLPTQ 104 (168)
T ss_pred EEEEEcc---cCCeEEeEEeEEEeCCC
Confidence 8876422 23588898888877543
Done!