BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037752
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Query: 1 MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTF-IDDKLNRGNEIS 59
++ S++ P ++Y+VFLSFRG D R F L +L R KI TF DD+L +G EI
Sbjct: 21 ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80
Query: 60 PSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
P+LL AI+ SKI + I S GYA S+WCL EL +I+ + + +I++P+FY+VDPSDVR+
Sbjct: 81 PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 119 QTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGF 157
QTG + +F K +F + +Q W+ A+++ +L G+
Sbjct: 141 QTGCYKKAFRKHANKFDGQ--TIQNWKDALKKVGDLKGW 177
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEGSKISI 73
KYDVFLSFRG D RHNFIS L L R+ I TF DDK L G SP L S IE S+ ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 74 VIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEER 133
V+ S+ YA+S WCL+ELV I++ + K V+P+FY V+P+ VR QTG + F K R
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 134 FKEKIDMLQTWRIAMREAANLSG 156
E + + WR A+ A LSG
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSG 148
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 2 ASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISP 60
A +++ ++ +D+F+S +D + +F+ L L + DD L G+ +
Sbjct: 7 AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65
Query: 61 SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
S+ + S+ IV+ S + W EL + + ++ ++P+++ V +V + +
Sbjct: 66 SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125
Query: 121 GTFGDSFS 128
T D +
Sbjct: 126 PTMADKLA 133
>pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 249
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 52 LNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILE-SKNKYGQIVVPVFYL 110
L+R E PS++ AI + ++I + ASS + L ILE K+K QI L
Sbjct: 110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDXLKDILEHXKHKTPQIRXECTQL 169
Query: 111 VDPSDVRNQTGTFGDSFSKLEERFKEK-----IDMLQTWRIAMREAANLSGFDSHGISRN 165
+ S + D +S L+ K++ I ++ + A+R GF+S I
Sbjct: 170 FNASXKEEK-----DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTI----GFESFAILIK 220
Query: 166 AFGQN 170
FG N
Sbjct: 221 IFGXN 225
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 210 ENAIEKLKRIPHMDIQKVLKVSYDGL---DDEEQNIFLD 245
E+A++KLK + ++ VL VS DGL DD+ +++ +D
Sbjct: 64 EDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVD 102
>pdb|3KZW|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|B Chain B, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|C Chain C, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|D Chain D, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|E Chain E, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|F Chain F, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|G Chain G, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|H Chain H, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|I Chain I, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|J Chain J, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|K Chain K, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|L Chain L, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
Length = 515
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 237 DEEQNIFLDIACFFKGQHR-DFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLL 295
D E + L A F+ Q++ +M+F G +A + + D DK+ SN+K+ ++D+L
Sbjct: 365 DAEGRLVLADAVFYANQYQPSVIMDFATLTG-AAIVALGD--DKAAAFESNSKVILNDIL 421
Query: 296 Q 296
Q
Sbjct: 422 Q 422
>pdb|1Y5E|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
pdb|1Y5E|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
pdb|1Y5E|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
Length = 169
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 291 MHDLLQEMGREIVRQESIKD---SGKRSRL--WHHEDIDQVLS 328
+H+LL+E G ++ E +KD S +++ L +H ED+D VL+
Sbjct: 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLT 78
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 170 NHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLK 229
N A E ++ +IK KG PL + ++G L WE +++L+ I+K
Sbjct: 306 NMKKADLPEQAHSIIKECKGSPLVVSLIGA-LLRDFPNRWEYYLKQLQNKQFKRIRKSSS 364
Query: 230 VSYDGLDD 237
Y+ LD+
Sbjct: 365 YDYEALDE 372
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 189 GIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIAC 248
G +A+K + L ++ E W I+ +K++ H ++ +V DGL N +A
Sbjct: 39 GEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVP-DGLQKLAPNDLPLLAM 97
Query: 249 FF--KGQHRDFVMNFQDACGFSA---KIGICDLVDKSLVIISNNKITMHDLLQE 297
+ G R ++ F++ CG + + D + +L + N+I DL E
Sbjct: 98 EYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD-ISSALRYLHENRIIHRDLKPE 150
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 189 GIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIAC 248
G +A+K + L ++ E W I+ +K++ H ++ +V DGL N +A
Sbjct: 40 GEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVP-DGLQKLAPNDLPLLAM 98
Query: 249 FF--KGQHRDFVMNFQDACGFSA---KIGICDLVDKSLVIISNNKITMHDLLQE 297
+ G R ++ F++ CG + + D + +L + N+I DL E
Sbjct: 99 EYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD-ISSALRYLHENRIIHRDLKPE 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,675,709
Number of Sequences: 62578
Number of extensions: 392346
Number of successful extensions: 1030
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 14
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)