Query 037752
Match_columns 332
No_of_seqs 308 out of 2153
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 06:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2.3E-48 7.8E-53 333.1 11.7 149 9-159 29-179 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 4.2E-48 1.4E-52 326.3 9.5 166 12-188 5-171 (176)
3 3h16_A TIR protein; bacteria T 100.0 8.5E-33 2.9E-37 230.6 5.4 120 10-130 15-135 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 7.3E-27 2.5E-31 192.5 2.8 134 10-148 5-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 6.1E-24 2.1E-28 175.8 2.0 103 12-116 2-110 (149)
6 2js7_A Myeloid differentiation 99.9 3.1E-23 1.1E-27 173.4 4.7 100 11-112 12-116 (160)
7 2j67_A TOLL like receptor 10; 99.9 2.2E-23 7.4E-28 177.1 3.6 102 10-113 30-137 (178)
8 1t3g_A X-linked interleukin-1 99.9 1.1E-22 3.9E-27 169.8 6.3 100 14-113 1-114 (159)
9 2a5y_B CED-4; apoptosis; HET: 99.8 3.2E-22 1.1E-26 198.9 4.3 142 162-307 302-472 (549)
10 3sfz_A APAF-1, apoptotic pepti 99.7 1.1E-18 3.8E-23 187.2 8.9 133 173-306 303-452 (1249)
11 1z6t_A APAF-1, apoptotic prote 99.7 4.8E-17 1.6E-21 162.6 8.4 165 162-330 295-495 (591)
12 1vt4_I APAF-1 related killer D 99.6 1.3E-16 4.4E-21 165.0 4.5 130 186-327 322-459 (1221)
13 3j0a_A TOLL-like receptor 5; m 99.6 4.1E-16 1.4E-20 162.3 6.8 101 11-113 666-774 (844)
14 1eiw_A Hypothetical protein MT 97.3 0.00022 7.7E-09 54.9 4.3 72 14-108 3-74 (111)
15 2qen_A Walker-type ATPase; unk 95.6 0.047 1.6E-06 49.4 9.4 112 178-299 226-348 (350)
16 3hyn_A Putative signal transdu 95.5 0.042 1.4E-06 45.5 7.4 83 23-110 27-118 (189)
17 2fna_A Conserved hypothetical 94.7 0.07 2.4E-06 48.3 7.6 111 181-298 233-355 (357)
18 1w5s_A Origin recognition comp 82.9 2.4 8.1E-05 39.0 6.9 102 178-285 240-371 (412)
19 2f62_A Nucleoside 2-deoxyribos 61.0 19 0.00065 28.9 6.3 73 30-107 27-104 (161)
20 2qby_A CDC6 homolog 1, cell di 55.8 99 0.0034 27.2 11.1 101 178-285 222-348 (386)
21 2v1u_A Cell division control p 51.9 1.3E+02 0.0043 26.6 11.8 124 179-331 227-381 (387)
22 2qby_B CDC6 homolog 3, cell di 46.2 1.4E+02 0.0048 26.4 10.5 100 179-285 223-339 (384)
23 2yvq_A Carbamoyl-phosphate syn 43.1 29 0.001 27.0 4.6 61 18-80 27-106 (143)
24 4fyk_A Deoxyribonucleoside 5'- 39.4 90 0.0031 24.7 6.9 84 17-108 4-101 (152)
25 3ukw_C Bimax1 peptide; arm rep 34.6 15 0.00052 19.5 1.0 10 309-318 19-28 (28)
26 3ehd_A Uncharacterized conserv 32.5 96 0.0033 24.8 6.1 75 29-108 19-104 (162)
27 1v54_E Cytochrome C oxidase po 30.3 22 0.00074 26.5 1.6 65 154-218 24-91 (109)
28 2khz_A C-MYC-responsive protei 28.5 1.4E+02 0.0048 23.6 6.5 85 15-107 11-109 (165)
29 2vda_B Maltoporin; sugar trans 28.0 28 0.00096 18.5 1.4 16 188-203 9-24 (28)
30 3chj_A Alpha-14 giardin; calci 24.9 1.3E+02 0.0044 27.0 6.2 81 173-257 9-89 (337)
31 2zhj_A Annexin A4; zynogen gra 23.7 2.3E+02 0.0079 25.1 7.7 81 175-258 18-98 (322)
32 3nqo_A MARR-family transcripti 21.2 1.2E+02 0.0042 24.1 4.9 60 226-285 30-90 (189)
33 1s2d_A Purine trans deoxyribos 21.0 88 0.003 25.1 3.9 84 17-107 9-115 (167)
34 4ev0_A Transcription regulator 20.8 36 0.0012 27.5 1.6 48 253-300 164-213 (216)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.3e-48 Score=333.07 Aligned_cols=149 Identities=45% Similarity=0.838 Sum_probs=138.4
Q ss_pred CCCCCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhH
Q 037752 9 NMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCL 87 (332)
Q Consensus 9 ~~~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~ 87 (332)
+.++.++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|+|||+||++|.||+
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 566789999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh-cCCeeEeeeeecCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHHhhhccccccc
Q 037752 88 NELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159 (332)
Q Consensus 88 ~El~~~~~~~~~-~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~~~g~~~ 159 (332)
+||++|++|.+. ++++|+||||+|+|++||+|+|.||++|.++..++.+ +++++|+.||+++++++||++
T Consensus 109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~ 179 (204)
T 3ozi_A 109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHI 179 (204)
T ss_dssp HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEE
T ss_pred HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceec
Confidence 999999999865 6899999999999999999999999999999888743 579999999999999999997
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.2e-48 Score=326.28 Aligned_cols=166 Identities=43% Similarity=0.682 Sum_probs=134.4
Q ss_pred CCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHH
Q 037752 12 PQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNEL 90 (332)
Q Consensus 12 ~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El 90 (332)
..++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|+|||+||++|.||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 478999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCeeEeeeeecCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHHhhhcccccccCCccccccCCC
Q 037752 91 VKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQN 170 (332)
Q Consensus 91 ~~~~~~~~~~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~~~g~~~~~F~~~AF~~~ 170 (332)
++|++|.+.++++|+||||+|+|++||+|+|.||++|.++..+ .+.+++++|+.||+++++++||++. .
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~---------~ 153 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG---------D 153 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC---------S
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC---------C
Confidence 9999999989999999999999999999999999999999887 4567899999999999999999961 1
Q ss_pred CCCcchHHHHHHHHHHhc
Q 037752 171 HPAAGYLELSNIVIKYAK 188 (332)
Q Consensus 171 ~~~~~~~~l~~~iv~~c~ 188 (332)
+..+-.+++++.|.++..
T Consensus 154 ~e~~~i~~Iv~~v~~~l~ 171 (176)
T 3jrn_A 154 DDSKLVDKIANEISNKKT 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 122224556666655544
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=8.5e-33 Score=230.63 Aligned_cols=120 Identities=20% Similarity=0.359 Sum_probs=111.8
Q ss_pred CCCCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHH
Q 037752 10 MNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLN 88 (332)
Q Consensus 10 ~~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~ 88 (332)
.++.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|+||++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35678999999999999 66799999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCeeEeeeeecCCCcccccccchhhhHHHH
Q 037752 89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKL 130 (332)
Q Consensus 89 El~~~~~~~~~~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~ 130 (332)
||..++++...++++|+||||+|+|++|++|+|.|+++|...
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999999998778889999999999999999999999988754
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.92 E-value=7.3e-27 Score=192.46 Aligned_cols=134 Identities=15% Similarity=0.261 Sum_probs=92.9
Q ss_pred CCCCcceeEEEeccccccccchHHHHHHHHhc--CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhh
Q 037752 10 MNPQIKYDVFLSFRGKDVRHNFISHLNAALCR--KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWC 86 (332)
Q Consensus 10 ~~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~--~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc 86 (332)
...++.|||||||+++|++ ||.+|+.+|++ .|+++|+|+ |+.+|+.|.++|.++|++||++|+|+|+||+.|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 3457899999999999955 79999999998 599999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCeeEeeeeecCCCc----ccccccchhhhHHHHHHhhhhhhhHHHHHHHHH
Q 037752 87 LNELVKILESKNKYGQIVVPVFYLVDPSD----VRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAM 148 (332)
Q Consensus 87 ~~El~~~~~~~~~~~~~vlpVfy~v~p~d----v~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL 148 (332)
..|+..++.+......+|+||||+|++++ ++....... ......|....+.|.+|+.+|
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 99999999987433447789999987554 444332211 122334444444588888764
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.88 E-value=6.1e-24 Score=175.82 Aligned_cols=103 Identities=17% Similarity=0.332 Sum_probs=91.8
Q ss_pred CCcceeEEEeccccccccchHHH-HHHHHhcC--CCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhH
Q 037752 12 PQIKYDVFLSFRGKDVRHNFISH-LNAALCRK--KIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCL 87 (332)
Q Consensus 12 ~~~~ydvFis~~~~D~~~~f~~~-L~~~L~~~--gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~ 87 (332)
.++.|||||||+++|+ .||.+ |..+|++. |+++|+|+ |+.+|+.+.++|.++|++||++|+|+|+||+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999995 69996 99999986 99999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhcCCeeEeeeee-cCCCcc
Q 037752 88 NELVKILESK-NKYGQIVVPVFYL-VDPSDV 116 (332)
Q Consensus 88 ~El~~~~~~~-~~~~~~vlpVfy~-v~p~dv 116 (332)
.|+..++.+. ...+..|+||||+ +.+.++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 9999988643 5667889999987 555444
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.87 E-value=3.1e-23 Score=173.42 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=90.8
Q ss_pred CCCcceeEEEeccccccccchHHHHHHHHhcC--CCeeeecC-CCCCCCCchHHHHHHhh-hcceEEEEeecCCcCChhh
Q 037752 11 NPQIKYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFIDD-KLNRGNEISPSLLSAIE-GSKISIVIFSKGYASSRWC 86 (332)
Q Consensus 11 ~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~--gi~~f~d~-~~~~g~~i~~~i~~~i~-~Sr~~i~v~S~~y~~S~wc 86 (332)
..++.|||||||+++| ..||.+|..+|+++ |+++|+|+ |+.+|+.|.++|.++|+ +||++|+|+|+||+.|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 3467899999999999 67999999999985 69999988 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhh-hhcCCeeEeeeeecC
Q 037752 87 LNELVKILESK-NKYGQIVVPVFYLVD 112 (332)
Q Consensus 87 ~~El~~~~~~~-~~~~~~vlpVfy~v~ 112 (332)
..|+..++.+. .+.+++|+||+|+.-
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 99999999876 445678999999854
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.87 E-value=2.2e-23 Score=177.11 Aligned_cols=102 Identities=19% Similarity=0.398 Sum_probs=87.2
Q ss_pred CCCCcceeEEEeccccccccchHHH-HHHHHhc--CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChh
Q 037752 10 MNPQIKYDVFLSFRGKDVRHNFISH-LNAALCR--KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRW 85 (332)
Q Consensus 10 ~~~~~~ydvFis~~~~D~~~~f~~~-L~~~L~~--~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~w 85 (332)
...++.|||||||+++| ..||.. |..+|++ +|+++|+|+ |+.+|+.|.++|.++|++||++|+|+|+||+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 34678999999999999 479975 9999998 899999998 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hhcCCeeEeeeee-cCC
Q 037752 86 CLNELVKILESK-NKYGQIVVPVFYL-VDP 113 (332)
Q Consensus 86 c~~El~~~~~~~-~~~~~~vlpVfy~-v~p 113 (332)
|..|+..++.+. .+.+++|+||||+ +.+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~ 137 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPF 137 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 999999999755 5567789999997 443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.1e-22 Score=169.78 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=89.2
Q ss_pred cceeEEEecccccc---------ccchHHHHHH-HHh-cCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCc
Q 037752 14 IKYDVFLSFRGKDV---------RHNFISHLNA-ALC-RKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYA 81 (332)
Q Consensus 14 ~~ydvFis~~~~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~ 81 (332)
+.|||||||+++|+ +..||.+|.. .|+ +.|+++|+|+ |+.+|+.|.++|.++|++||.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 36999999999996 4679999776 599 7999999988 9999999999999999999999999999997
Q ss_pred -CChhhHHHHHHHHHhh-hhcCCeeEeeeeecCC
Q 037752 82 -SSRWCLNELVKILESK-NKYGQIVVPVFYLVDP 113 (332)
Q Consensus 82 -~S~wc~~El~~~~~~~-~~~~~~vlpVfy~v~p 113 (332)
.|.||..|+..++.+. .+.+..|+||+|+-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999987 5667899999977444
No 9
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.84 E-value=3.2e-22 Score=198.89 Aligned_cols=142 Identities=10% Similarity=0.064 Sum_probs=113.5
Q ss_pred ccccccCCCCCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHH-HhcCCCCchHHHHHHhhcCCCHHHH
Q 037752 162 ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEK-LKRIPHMDIQKVLKVSYDGLDDEEQ 240 (332)
Q Consensus 162 F~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~-l~~~~~~~i~~~L~~Syd~L~~~~k 240 (332)
|+++||+... ++++.+++.+|+++|+|+||||+++|+.|+.++ ++|...+.. +...+..++..+|.+||+.||+++|
T Consensus 302 f~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk 379 (549)
T 2a5y_B 302 LEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQ 379 (549)
T ss_dssp HHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHH
T ss_pred HHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHH
Confidence 8889987643 468889999999999999999999999998774 444333333 3333556799999999999999999
Q ss_pred HHHH-----------hhcccCCCCCHHHHHHHHHHc--CCChh-----------HHHHHHhhCCcceee----CCeEEec
Q 037752 241 NIFL-----------DIACFFKGQHRDFVMNFQDAC--GFSAK-----------IGICDLVDKSLVIIS----NNKITMH 292 (332)
Q Consensus 241 ~~fl-----------~~a~fp~~~~~~~l~~lw~~~--g~~~~-----------~~l~~Lv~~sLl~~~----~~~~~mH 292 (332)
.||+ |||+||++++.+ +.+|+++ ||+.. .++++|+++||++.. ..+|+||
T Consensus 380 ~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mH 457 (549)
T 2a5y_B 380 RCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKID 457 (549)
T ss_dssp HHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECC
T ss_pred HHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeC
Confidence 9999 999999986555 8899999 77643 269999999999976 2479999
Q ss_pred HHHHHHHHHHHhhcC
Q 037752 293 DLLQEMGREIVRQES 307 (332)
Q Consensus 293 dlv~~~a~~i~~~e~ 307 (332)
||||+||++++.+++
T Consensus 458 dlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 458 HIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHHTTSCTHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999998887665
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.75 E-value=1.1e-18 Score=187.25 Aligned_cols=133 Identities=19% Similarity=0.282 Sum_probs=116.0
Q ss_pred CcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCC-----------CchHHHHHHhhcCCCHHHHH
Q 037752 173 AAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPH-----------MDIQKVLKVSYDGLDDEEQN 241 (332)
Q Consensus 173 ~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~-----------~~i~~~L~~Syd~L~~~~k~ 241 (332)
.+++.+++.+|+++|+||||||+++|+.|+.++ ..|...+++|..... ..+..+|.+||+.|++++|+
T Consensus 303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 381 (1249)
T 3sfz_A 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKD 381 (1249)
T ss_dssp STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHH
T ss_pred hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHH
Confidence 345667899999999999999999999998876 579999999866331 24889999999999999999
Q ss_pred HHHhhcccCCC--CCHHHHHHHHHHcCCChhHHHHHHhhCCcceee-CC---eEEecHHHHHHHHHHHhhc
Q 037752 242 IFLDIACFFKG--QHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-NN---KITMHDLLQEMGREIVRQE 306 (332)
Q Consensus 242 ~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~-~~---~~~mHdlv~~~a~~i~~~e 306 (332)
||++||+||++ ++.+.++.+|.+++...+..|++|+++||++.. ++ +|+||||+|+||++.+.++
T Consensus 382 ~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 382 YYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999987 689999999988877788899999999999987 54 4999999999999986554
No 11
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.67 E-value=4.8e-17 Score=162.59 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=127.8
Q ss_pred ccccccCCCCCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCC-----------CchHHHHHH
Q 037752 162 ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPH-----------MDIQKVLKV 230 (332)
Q Consensus 162 F~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~-----------~~i~~~L~~ 230 (332)
|...++. +.....+.+.+|+++|+|+||||+.+|+.|+.++ ..|...++.|..... ..+..+|..
T Consensus 295 ~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 370 (591)
T 1z6t_A 295 LSLFVNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (591)
T ss_dssp HHHHHTS---CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHH
T ss_pred HHHHhCC---CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHH
Confidence 5555543 2234457889999999999999999999998764 369888888875321 358899999
Q ss_pred hhcCCCHHHHHHHHhhcccCCC--CCHHHHHHHHHHcCCChhHHHHHHhhCCcceee-C---CeEEecHHHHHHHHHHHh
Q 037752 231 SYDGLDDEEQNIFLDIACFFKG--QHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-N---NKITMHDLLQEMGREIVR 304 (332)
Q Consensus 231 Syd~L~~~~k~~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~-~---~~~~mHdlv~~~a~~i~~ 304 (332)
||+.||++.|.||++||+||.| ++.+.+..+|..++......++.|+++||++.. + .+|+||+++|+++++...
T Consensus 371 s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 9999999999999999999986 788899999987655567789999999999876 2 379999999999987621
Q ss_pred ------------hcC-------cCCCCCcccccCcchHHHHHhhc
Q 037752 305 ------------QES-------IKDSGKRSRLWHHEDIDQVLSKN 330 (332)
Q Consensus 305 ------------~e~-------~~~~~~~~rl~~~~~~~~~l~~~ 330 (332)
... +..++.+.++|++..+.+++.-+
T Consensus 451 ~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~ 495 (591)
T 1z6t_A 451 SQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAK 495 (591)
T ss_dssp GGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcC
Confidence 110 12345666778777788776543
No 12
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.62 E-value=1.3e-16 Score=165.04 Aligned_cols=130 Identities=12% Similarity=0.158 Sum_probs=104.4
Q ss_pred HhcCCchHHHHhhhhhcCC--CHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHH-HHHHHhhcccCCC--CCHHHHHH
Q 037752 186 YAKGIPLALKVLGRYLFGR--SEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEE-QNIFLDIACFFKG--QHRDFVMN 260 (332)
Q Consensus 186 ~c~GlPLAl~~ig~~L~~k--~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~-k~~fl~~a~fp~~--~~~~~l~~ 260 (332)
.|+|+||||+++|+.|+++ +..+|+.. ....+..+|++||+.||+++ |+||++||+||++ ++.+.++.
T Consensus 322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~ 394 (1221)
T 1vt4_I 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394 (1221)
T ss_dssp HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHH
T ss_pred HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 3999999999999999987 67788653 34579999999999999999 9999999999987 67888999
Q ss_pred HHHHcCC-ChhHHHHHHhhCCcceee--CCeEEecHHHHHHHHHHHhhcCcCCCCCcccccCcchHHHHH
Q 037752 261 FQDACGF-SAKIGICDLVDKSLVIIS--NNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVL 327 (332)
Q Consensus 261 lw~~~g~-~~~~~l~~Lv~~sLl~~~--~~~~~mHdlv~~~a~~i~~~e~~~~~~~~~rl~~~~~~~~~l 327 (332)
+|+++|. .+...|++|+++||++.. .++|+||||+++++.. ....+..++|+.++-.+.+++
T Consensus 395 LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~~-----~~e~~alHrRLvd~Y~~~~vf 459 (1221)
T 1vt4_I 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPKTF 459 (1221)
T ss_dssp HHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHHH-----HSCCTTHHHHHHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhcC-----CCcHHHHHHHHHHHHHhhCcC
Confidence 9998863 356789999999999986 5689999999885521 113455666666665555444
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=4.1e-16 Score=162.26 Aligned_cols=101 Identities=18% Similarity=0.312 Sum_probs=90.3
Q ss_pred CCCcceeEEEeccccccccchH-HHHHHHHhc-----CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCC
Q 037752 11 NPQIKYDVFLSFRGKDVRHNFI-SHLNAALCR-----KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASS 83 (332)
Q Consensus 11 ~~~~~ydvFis~~~~D~~~~f~-~~L~~~L~~-----~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S 83 (332)
...++|||||||+++| ..|| ..|...|++ .|+++|+++ |+.+|+.|.++|.++|++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 3568999999999999 4577 779999985 589999998 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhh-hhcCCeeEeeeeecCC
Q 037752 84 RWCLNELVKILESK-NKYGQIVVPVFYLVDP 113 (332)
Q Consensus 84 ~wc~~El~~~~~~~-~~~~~~vlpVfy~v~p 113 (332)
.||..|+..++.+. .+.+++|+||||+-.|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 99999999888766 5677899999998444
No 14
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.28 E-value=0.00022 Score=54.86 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=51.2
Q ss_pred cceeEEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHH
Q 037752 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKI 93 (332)
Q Consensus 14 ~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~ 93 (332)
..|.+||||..+|..+.|++.| .+.|+. |.| ..|+.|.+.|++.+++..+|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFLERL----EQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHHHHHHHHHH----HHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhHHHHHHHHH----hCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 3689999999998333333433 344442 333 568999999999999999999999997654
Q ss_pred HHhhhhcCCeeEeee
Q 037752 94 LESKNKYGQIVVPVF 108 (332)
Q Consensus 94 ~~~~~~~~~~vlpVf 108 (332)
.+ .+..|+-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 44 455666654
No 15
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.62 E-value=0.047 Score=49.39 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCchHHHHhhhhhcC-CCHHHHH-HHHHHHhcCCCCchHHHHHHhhcCC---CHHHHHHHHhhcccCCC
Q 037752 178 ELSNIVIKYAKGIPLALKVLGRYLFG-RSEEEWE-NAIEKLKRIPHMDIQKVLKVSYDGL---DDEEQNIFLDIACFFKG 252 (332)
Q Consensus 178 ~l~~~iv~~c~GlPLAl~~ig~~L~~-k~~~~w~-~~l~~l~~~~~~~i~~~L~~Syd~L---~~~~k~~fl~~a~fp~~ 252 (332)
+.+..+...|+|.|+++..++..+.. .+...+- ...+.. ...+.-.+..| ++..+.++..+|+ ..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~l~~~~~~~~~~l~~la~--g~ 295 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA--------KGLIMGELEELRRRSPRYVDILRAIAL--GY 295 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHCHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH--------HHHHHHHHHHHHhCChhHHHHHHHHHh--CC
Confidence 46778999999999999999876532 3332221 111111 11111112222 7899999999998 23
Q ss_pred CCHHHHHHHHHHc--CCCh---hHHHHHHhhCCcceeeCCeEEe-cHHHHHHH
Q 037752 253 QHRDFVMNFQDAC--GFSA---KIGICDLVDKSLVIISNNKITM-HDLLQEMG 299 (332)
Q Consensus 253 ~~~~~l~~lw~~~--g~~~---~~~l~~Lv~~sLl~~~~~~~~m-Hdlv~~~a 299 (332)
.+...+...+... |... ...++.|++++||...+++|++ |.+++.+-
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 296 NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 5666666655332 3432 3469999999999877778887 55777653
No 16
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.45 E-value=0.042 Score=45.50 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=59.6
Q ss_pred cccccccchHHHHHHHHhcCCCeeeecC-CCC-------C-CCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHH
Q 037752 23 RGKDVRHNFISHLNAALCRKKIVTFIDD-KLN-------R-GNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKI 93 (332)
Q Consensus 23 ~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~-------~-g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~ 93 (332)
...| -...+.|..--....+..|.|- +.. . -+.|...+.+.|..|...|+++|++...|.|-..|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 3455 3356667666666566777775 442 2 235778999999999999999999999999999998877
Q ss_pred HHhhhhcCCeeEeeeee
Q 037752 94 LESKNKYGQIVVPVFYL 110 (332)
Q Consensus 94 ~~~~~~~~~~vlpVfy~ 110 (332)
++ ..+..|+-|.-+
T Consensus 105 i~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPD 118 (189)
T ss_dssp TT---TTCCCEEEEETT
T ss_pred HH---hcCCcEEEEECC
Confidence 72 234567766533
No 17
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.73 E-value=0.07 Score=48.31 Aligned_cols=111 Identities=20% Similarity=0.141 Sum_probs=70.4
Q ss_pred HHHHHHhcCCchHHHHhhhhhcC-CCHHHHHH-HHHHHhcCCCCchHHHHH-Hhhc--CCCHHHHHHHHhhcccCCCCCH
Q 037752 181 NIVIKYAKGIPLALKVLGRYLFG-RSEEEWEN-AIEKLKRIPHMDIQKVLK-VSYD--GLDDEEQNIFLDIACFFKGQHR 255 (332)
Q Consensus 181 ~~iv~~c~GlPLAl~~ig~~L~~-k~~~~w~~-~l~~l~~~~~~~i~~~L~-~Syd--~L~~~~k~~fl~~a~fp~~~~~ 255 (332)
..+...|+|.|+++..++..+.. .+.+.|-. ..+.... .+...+. +.++ .|++..+.++..+|+ . . +.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----LILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence 78899999999999999887643 34333321 1111110 1112222 2121 688899999999998 3 2 66
Q ss_pred HHHHHHHH-HcC--CC---hhHHHHHHhhCCcceeeCCeEEe-cHHHHHH
Q 037752 256 DFVMNFQD-ACG--FS---AKIGICDLVDKSLVIISNNKITM-HDLLQEM 298 (332)
Q Consensus 256 ~~l~~lw~-~~g--~~---~~~~l~~Lv~~sLl~~~~~~~~m-Hdlv~~~ 298 (332)
..+..... ..| .. ....++.|++++||....+.|++ |.+++++
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 66665432 234 32 23579999999999876677885 6788765
No 18
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.95 E-value=2.4 Score=39.01 Aligned_cols=102 Identities=16% Similarity=0.039 Sum_probs=58.5
Q ss_pred HHHHHHHHHhc------CCchHHHHhhhh-hc-----CC---CHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHHH
Q 037752 178 ELSNIVIKYAK------GIPLALKVLGRY-LF-----GR---SEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNI 242 (332)
Q Consensus 178 ~l~~~iv~~c~------GlPLAl~~ig~~-L~-----~k---~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~~ 242 (332)
+....+++.|+ |.|..+..+... +. +. +...+..++..... ...+.-+++.||+..+.+
T Consensus 240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~ 313 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELII 313 (412)
T ss_dssp HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHH
Confidence 45677888888 999655444322 11 11 23344433332210 234555778899999999
Q ss_pred HHhhcccC----CCCCHHHHHHHH-----HHcCCC------hhHHHHHHhhCCcceee
Q 037752 243 FLDIACFF----KGQHRDFVMNFQ-----DACGFS------AKIGICDLVDKSLVIIS 285 (332)
Q Consensus 243 fl~~a~fp----~~~~~~~l~~lw-----~~~g~~------~~~~l~~Lv~~sLl~~~ 285 (332)
+..++.++ ..++...+...+ ...|.. ....++.|++.+||...
T Consensus 314 l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 314 LRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 99999764 125555444322 223432 13468999999999764
No 19
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=61.01 E-value=19 Score=28.92 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=51.1
Q ss_pred chHHHHHHHHhcCCCeeeecC--CCCCCCCchHHHHHHhhhcceEEEEeec---CCcCChhhHHHHHHHHHhhhhcCCee
Q 037752 30 NFISHLNAALCRKKIVTFIDD--KLNRGNEISPSLLSAIEGSKISIVIFSK---GYASSRWCLNELVKILESKNKYGQIV 104 (332)
Q Consensus 30 ~f~~~L~~~L~~~gi~~f~d~--~~~~g~~i~~~i~~~i~~Sr~~i~v~S~---~y~~S~wc~~El~~~~~~~~~~~~~v 104 (332)
.+...+.+.|++.|..+|.-. .......|...-.++|++|++.|++++| .+..+ -...|+-.+.... +.|
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~-GTafEiGyA~Alg----KPV 101 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDC-GTAFEVGCAAALN----KMV 101 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCH-HHHHHHHHHHHTT----CEE
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCC-cHHHHHHHHHHCC----CEE
Confidence 488999999999999888732 2223345566668999999999999985 34443 3677876655543 455
Q ss_pred Eee
Q 037752 105 VPV 107 (332)
Q Consensus 105 lpV 107 (332)
+-+
T Consensus 102 i~l 104 (161)
T 2f62_A 102 LTF 104 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 20
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=55.79 E-value=99 Score=27.25 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=56.9
Q ss_pred HHHHHHHHHhc---CCch-HHHHhhhhhc-----C---CCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHHHHHh
Q 037752 178 ELSNIVIKYAK---GIPL-ALKVLGRYLF-----G---RSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLD 245 (332)
Q Consensus 178 ~l~~~iv~~c~---GlPL-Al~~ig~~L~-----~---k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~~fl~ 245 (332)
+....+++.++ |.|. ++.++..... + -+.+.++.++..+. ...+.-++..|++..+..+.-
T Consensus 222 ~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~a 294 (386)
T 2qby_A 222 NVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMA 294 (386)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHH
Confidence 34555666666 8886 4443332221 1 24555655555442 245677788999998888888
Q ss_pred hcccCC-C---CCHHHH----HHHHHHcCCCh------hHHHHHHhhCCcceee
Q 037752 246 IACFFK-G---QHRDFV----MNFQDACGFSA------KIGICDLVDKSLVIIS 285 (332)
Q Consensus 246 ~a~fp~-~---~~~~~l----~~lw~~~g~~~------~~~l~~Lv~~sLl~~~ 285 (332)
++...+ + ++...+ ..+....|..+ ...++.|.+.+||+..
T Consensus 295 i~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 295 VVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 875432 2 334333 22223333322 3468999999999753
No 21
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=51.87 E-value=1.3e+02 Score=26.60 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=72.4
Q ss_pred HHHHHHHHhc---CCc-hHHHHhhhhhc-----C---CCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHHHHHhh
Q 037752 179 LSNIVIKYAK---GIP-LALKVLGRYLF-----G---RSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDI 246 (332)
Q Consensus 179 l~~~iv~~c~---GlP-LAl~~ig~~L~-----~---k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~~fl~~ 246 (332)
....++++++ |.| .|+.++..... + -+.+.+..++.... ...+.-++.+|++..+..++-+
T Consensus 227 ~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~ 299 (387)
T 2v1u_A 227 VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSI 299 (387)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHH
Confidence 3456666776 888 44433333221 1 24566666665542 2356677899999999888877
Q ss_pred cccCCC---CCHHHHHH----HHHHcCCC------hhHHHHHHhhCCcceee------CCeEEecHHHHHHHHHHHhhcC
Q 037752 247 ACFFKG---QHRDFVMN----FQDACGFS------AKIGICDLVDKSLVIIS------NNKITMHDLLQEMGREIVRQES 307 (332)
Q Consensus 247 a~fp~~---~~~~~l~~----lw~~~g~~------~~~~l~~Lv~~sLl~~~------~~~~~mHdlv~~~a~~i~~~e~ 307 (332)
+....+ +....+.+ +....|.. ....++.|...++++.. .+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~------------------ 361 (387)
T 2v1u_A 300 MMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKT------------------ 361 (387)
T ss_dssp HHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEE------------------
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCce------------------
Confidence 744333 34443333 22333332 22368889999998863 1222
Q ss_pred cCCCCCcccccCcchHHHHHhhcC
Q 037752 308 IKDSGKRSRLWHHEDIDQVLSKNT 331 (332)
Q Consensus 308 ~~~~~~~~rl~~~~~~~~~l~~~~ 331 (332)
.+.+.+|++++|.++|.+++
T Consensus 362 ----~~~~l~~~~~~i~~~l~~~~ 381 (387)
T 2v1u_A 362 ----REVSLDADRLAVENALSEDP 381 (387)
T ss_dssp ----EEEEECSCHHHHHHHHHHST
T ss_pred ----eEEEecCCHHHHHHHHhccH
Confidence 23456777888888887654
No 22
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=46.16 E-value=1.4e+02 Score=26.41 Aligned_cols=100 Identities=14% Similarity=0.003 Sum_probs=58.4
Q ss_pred HHHHHHHHhc---CCch-HHHHhhhhh--c----CCCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHHHHHhhcc
Q 037752 179 LSNIVIKYAK---GIPL-ALKVLGRYL--F----GRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIAC 248 (332)
Q Consensus 179 l~~~iv~~c~---GlPL-Al~~ig~~L--~----~k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~~fl~~a~ 248 (332)
....+++.|+ |-|. |+.++-... . .-+.+.+..++.... ...+..+++.|++.+|..+.-++.
T Consensus 223 ~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 223 ILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 4456666776 7765 444333322 1 135677777776653 245777889999988888887776
Q ss_pred cCCCCCH-HHHHHHHHHcCCCh------hHHHHHHhhCCcceee
Q 037752 249 FFKGQHR-DFVMNFQDACGFSA------KIGICDLVDKSLVIIS 285 (332)
Q Consensus 249 fp~~~~~-~~l~~lw~~~g~~~------~~~l~~Lv~~sLl~~~ 285 (332)
...+-+. +....+....|..+ ...++.|.+++|++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 296 SEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2121011 12233333344221 2368899999999864
No 23
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=43.14 E-value=29 Score=27.03 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=38.9
Q ss_pred EEEeccccccccchHHHHHHHHhcCCCeeeec--------C---------CCCCC-C-CchHHHHHHhhhcceEEEEeec
Q 037752 18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFID--------D---------KLNRG-N-EISPSLLSAIEGSKISIVIFSK 78 (332)
Q Consensus 18 vFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d--------~---------~~~~g-~-~i~~~i~~~i~~Sr~~i~v~S~ 78 (332)
||||.+..| +.-...+.+.|.+.|++.+-- + +..-| + .-.++|.+.|.+-.+.+||..+
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998877 334555777888888887631 0 11112 1 0115678888888888888877
Q ss_pred CC
Q 037752 79 GY 80 (332)
Q Consensus 79 ~y 80 (332)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 24
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=39.40 E-value=90 Score=24.69 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=53.1
Q ss_pred eEEEe--ccccccccchHHHHHHHHhcCCCeeeecC----CC-CCCC-------CchHHHHHHhhhcceEEEEeecCCcC
Q 037752 17 DVFLS--FRGKDVRHNFISHLNAALCRKKIVTFIDD----KL-NRGN-------EISPSLLSAIEGSKISIVIFSKGYAS 82 (332)
Q Consensus 17 dvFis--~~~~D~~~~f~~~L~~~L~~~gi~~f~d~----~~-~~g~-------~i~~~i~~~i~~Sr~~i~v~S~~y~~ 82 (332)
-||++ +++.+....+...+.+.|++.| .|+... ++ ..|+ .|...-.+.|.+|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 36665 3342223357799999999999 675432 11 1222 266667799999999999988 44
Q ss_pred ChhhHHHHHHHHHhhhhcCCeeEeee
Q 037752 83 SRWCLNELVKILESKNKYGQIVVPVF 108 (332)
Q Consensus 83 S~wc~~El~~~~~~~~~~~~~vlpVf 108 (332)
|.-...|+..+.... ..|+-++
T Consensus 80 d~Gt~~EiG~A~alg----kPV~~l~ 101 (152)
T 4fyk_A 80 SLGVGYELGRAVALG----KPILCLF 101 (152)
T ss_dssp CHHHHHHHHHHHHTT----CCEEEEE
T ss_pred CCCHHHHHHHHHHcC----CeEEEEE
Confidence 666777887766543 4555544
No 25
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=34.57 E-value=15 Score=19.46 Aligned_cols=10 Identities=50% Similarity=1.026 Sum_probs=7.9
Q ss_pred CCCCCccccc
Q 037752 309 KDSGKRSRLW 318 (332)
Q Consensus 309 ~~~~~~~rl~ 318 (332)
+.|.+|.|||
T Consensus 19 epprkrkrlw 28 (28)
T 3ukw_C 19 EPPRKRKRLW 28 (28)
T ss_dssp SCCSSCCCCC
T ss_pred CcchhhhccC
Confidence 4578888888
No 26
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=32.50 E-value=96 Score=24.77 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=49.9
Q ss_pred cchHHHHHHHHhcC--CCeeee--cCCC---CCC----CCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHHHHhh
Q 037752 29 HNFISHLNAALCRK--KIVTFI--DDKL---NRG----NEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESK 97 (332)
Q Consensus 29 ~~f~~~L~~~L~~~--gi~~f~--d~~~---~~g----~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~~~~~ 97 (332)
..+...+.++|++. |+.+|. |+.. ..+ ..|...-.++|.+|++.|.++.. ...+.....|+-.+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~- 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDG-PTIDAGVASEIGVAYAK- 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHC-
Confidence 34788899999875 888876 2211 111 23555666889999999999953 34566788888776654
Q ss_pred hhcCCeeEeee
Q 037752 98 NKYGQIVVPVF 108 (332)
Q Consensus 98 ~~~~~~vlpVf 108 (332)
+..|+.+.
T Consensus 97 ---gkPVi~~~ 104 (162)
T 3ehd_A 97 ---GIPVVALY 104 (162)
T ss_dssp ---TCCEEEEC
T ss_pred ---CCEEEEEE
Confidence 34555553
No 27
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=30.35 E-value=22 Score=26.47 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=42.8
Q ss_pred ccccccCCccccccCCC-CCCcchHHHHHHHHHHhcCCchHHHHhhhhhcC--CCHHHHHHHHHHHhc
Q 037752 154 LSGFDSHGISRNAFGQN-HPAAGYLELSNIVIKYAKGIPLALKVLGRYLFG--RSEEEWENAIEKLKR 218 (332)
Q Consensus 154 ~~g~~~~~F~~~AF~~~-~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~--k~~~~w~~~l~~l~~ 218 (332)
+.||+.+.-+++.|+.. .|.|.....+-+.+++..-.|+|++++-+.-.. ...+.|..+++.|+.
T Consensus 24 iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkP 91 (109)
T 1v54_E 24 IDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRP 91 (109)
T ss_dssp CCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhh
Confidence 45555443334445533 567788888888999999999999998775432 223447777776543
No 28
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=28.54 E-value=1.4e+02 Score=23.59 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred ceeEEEec--cccccccchHHHHHHHHhcCCCeeeecCCC-----CCCC-------CchHHHHHHhhhcceEEEEeecCC
Q 037752 15 KYDVFLSF--RGKDVRHNFISHLNAALCRKKIVTFIDDKL-----NRGN-------EISPSLLSAIEGSKISIVIFSKGY 80 (332)
Q Consensus 15 ~ydvFis~--~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~-----~~g~-------~i~~~i~~~i~~Sr~~i~v~S~~y 80 (332)
+.-|||+= .+..........+.+.|++.| .++.++.. ..|. .|...-.+.|++|++.|++++
T Consensus 11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~--- 86 (165)
T 2khz_A 11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT--- 86 (165)
T ss_dssp CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS---
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC---
Confidence 34699982 211111214588889999999 87654322 1221 133444589999999999987
Q ss_pred cCChhhHHHHHHHHHhhhhcCCeeEee
Q 037752 81 ASSRWCLNELVKILESKNKYGQIVVPV 107 (332)
Q Consensus 81 ~~S~wc~~El~~~~~~~~~~~~~vlpV 107 (332)
..+.-+..|+-.+... +..|+-+
T Consensus 87 ~~d~Gt~~EiGyA~al----gKPVi~l 109 (165)
T 2khz_A 87 QPSLGVGYELGRAVAL----GKPILCL 109 (165)
T ss_dssp SCCHHHHHHHHHHHHT----CSSEEEE
T ss_pred CCCCCHHHHHHHHHHC----CCEEEEE
Confidence 3455678888776654 3455543
No 29
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=28.01 E-value=28 Score=18.51 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.0
Q ss_pred cCCchHHHHhhhhhcC
Q 037752 188 KGIPLALKVLGRYLFG 203 (332)
Q Consensus 188 ~GlPLAl~~ig~~L~~ 203 (332)
.-||||+.++++.+..
T Consensus 9 rklplavav~agv~~a 24 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCTHHHHHHHHTTCC
T ss_pred ccCchHHHHHHHHhHh
Confidence 4689999999987754
No 30
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein; 1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Probab=24.87 E-value=1.3e+02 Score=27.04 Aligned_cols=81 Identities=11% Similarity=0.031 Sum_probs=50.8
Q ss_pred CcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHHHHHhhcccCCC
Q 037752 173 AAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKG 252 (332)
Q Consensus 173 ~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~~fl~~a~fp~~ 252 (332)
.++....++.+-+.+.|.+ --..+-..|..++......+.......-..++.+.|+. .++...+.+++.+..-|..
T Consensus 9 ~~~v~~da~~L~kA~kg~~-de~~ii~IL~~rs~~Qr~~i~~~Y~~~~g~dL~~~lk~---e~sG~fe~~l~~l~~~p~~ 84 (337)
T 3chj_A 9 STGVTAVVQKVVEACQDES-KRLDLIEIARSYPPNQLRNMQRTFQAITGTFLDAFLKK---HLSKDFESLVLMLYKPRAQ 84 (337)
T ss_dssp --CHHHHHHHHHHHHHCGG-GTTHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHT---TSCHHHHHHHHHHTSCHHH
T ss_pred CchHHHHHHHHHHHhCCCC-CHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHH---hcCccHHHHHHHHhCChHH
Confidence 3456677888888888873 44456666777887777777777666555667776664 3466677777666443333
Q ss_pred CCHHH
Q 037752 253 QHRDF 257 (332)
Q Consensus 253 ~~~~~ 257 (332)
+....
T Consensus 85 ~dA~~ 89 (337)
T 3chj_A 85 LLCEL 89 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 31
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=23.72 E-value=2.3e+02 Score=25.08 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHHHHHhhcccCCCCC
Q 037752 175 GYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQH 254 (332)
Q Consensus 175 ~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~~fl~~a~fp~~~~ 254 (332)
+-..-+..+-+.+.|+----..+-..|..++...+..+.......-.+++...|+. .|+...+.+++.+...|...+
T Consensus 18 ~~~~Da~~L~kA~kG~GtdE~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lks---elsG~fe~~l~~l~~~~~~~D 94 (322)
T 2zhj_A 18 NATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKS---ELSSNFEQVILGMMTPTVLYD 94 (322)
T ss_dssp CHHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHH---HCCHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHh---hcCccHHHHHHHHcCCcHHHH
Confidence 33566888888888875555566677777888888887777665445566666654 356666666666665554333
Q ss_pred HHHH
Q 037752 255 RDFV 258 (332)
Q Consensus 255 ~~~l 258 (332)
...|
T Consensus 95 A~~L 98 (322)
T 2zhj_A 95 VQEL 98 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 32
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.15 E-value=1.2e+02 Score=24.15 Aligned_cols=60 Identities=8% Similarity=-0.033 Sum_probs=42.0
Q ss_pred HHHHHhhcCCCHHHHHHHHhhcccCC-CCCHHHHHHHHHHcCCChhHHHHHHhhCCcceee
Q 037752 226 KVLKVSYDGLDDEEQNIFLDIACFFK-GQHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS 285 (332)
Q Consensus 226 ~~L~~Syd~L~~~~k~~fl~~a~fp~-~~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~ 285 (332)
..+.-.+..|++.+-.++..+.-.|. +.+...+...+.-..-.....++.|+.++||+..
T Consensus 30 ~~~~~~~~~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 30 IEGDKYFGILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHccCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 33444455688888888888887764 4888888777643222234479999999999865
No 33
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=21.03 E-value=88 Score=25.05 Aligned_cols=84 Identities=10% Similarity=0.159 Sum_probs=53.9
Q ss_pred eEEEe---ccccccccchHHHHHHHHhcC--CCeeeecC--CC--------CCC--------CCchHHHHHHhhhcceEE
Q 037752 17 DVFLS---FRGKDVRHNFISHLNAALCRK--KIVTFIDD--KL--------NRG--------NEISPSLLSAIEGSKISI 73 (332)
Q Consensus 17 dvFis---~~~~D~~~~f~~~L~~~L~~~--gi~~f~d~--~~--------~~g--------~~i~~~i~~~i~~Sr~~i 73 (332)
-||+. |+..+ ..+...+.+.|++. |..+|.=. .. +.| ..|...-.++|.+|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 36665 33333 34788999999999 87777521 22 111 234456668999999999
Q ss_pred EEeecCCcCChhhHHHHHHHHHhhhhcCCeeEee
Q 037752 74 VIFSKGYASSRWCLNELVKILESKNKYGQIVVPV 107 (332)
Q Consensus 74 ~v~S~~y~~S~wc~~El~~~~~~~~~~~~~vlpV 107 (332)
.++......+. ...|+-.+.-. +..|+-+
T Consensus 87 A~ldg~~~D~G-Ta~EiGyA~al----gKPVv~l 115 (167)
T 1s2d_A 87 FLYDMDQLDDG-SAFXIGFMRAM----HKPVILV 115 (167)
T ss_dssp EEEESSSCCHH-HHHHHHHHHHT----TCCEEEE
T ss_pred EECCCCCCCCC-ceeehhhHhhC----CCeEEEE
Confidence 99997666554 66777655543 3455544
No 34
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=20.84 E-value=36 Score=27.48 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHHhhCCcceeeCCeEEecHH--HHHHHH
Q 037752 253 QHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDL--LQEMGR 300 (332)
Q Consensus 253 ~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~~~~~~mHdl--v~~~a~ 300 (332)
++...+..+....--.....+..|.+.++|....+++.+.|. ++++|.
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a~ 213 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIAF 213 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhh
Confidence 577777777743222234468999999999988889998864 555553
Done!