Query 037752
Match_columns 332
No_of_seqs 308 out of 2153
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 06:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037752.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037752hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fyva_ c.23.2.1 (A:) Toll-lik 99.8 3.8E-21 2.8E-25 159.1 4.9 101 9-111 6-109 (161)
2 d1fyxa_ c.23.2.1 (A:) Toll-lik 99.8 3.1E-20 2.2E-24 151.6 2.4 100 12-113 2-106 (149)
3 d2a5yb3 c.37.1.20 (B:109-385) 99.4 3.9E-14 2.8E-18 126.5 2.3 84 162-246 194-277 (277)
4 d1wu7a1 c.51.1.1 (A:330-426) H 69.8 4.9 0.00036 27.4 5.9 60 15-78 3-62 (97)
5 d2f62a1 c.23.14.1 (A:9-160) Nu 58.1 11 0.00081 28.1 6.3 72 26-97 15-90 (152)
6 d1atia1 c.51.1.1 (A:395-505) G 50.7 3.1 0.00023 29.4 1.8 35 25-59 16-51 (111)
7 d1dlja3 c.26.3.1 (A:295-402) U 48.8 9.2 0.00067 26.6 4.1 49 24-72 29-83 (108)
8 d1nyra1 c.51.1.1 (A:533-645) T 44.6 8.1 0.00059 27.0 3.3 42 17-58 15-57 (113)
9 d1qe0a1 c.51.1.1 (A:326-420) H 43.2 23 0.0017 23.5 5.5 60 14-77 3-62 (95)
10 d1qf6a1 c.51.1.1 (A:533-642) T 41.3 26 0.0019 23.9 5.7 61 16-80 8-68 (110)
11 d1f8ya_ c.23.14.1 (A:) Nucleos 38.6 45 0.0033 24.4 7.1 86 16-108 3-112 (156)
12 d1a9xa2 c.24.1.1 (A:936-1073) 37.4 41 0.003 24.2 6.5 64 14-79 6-83 (138)
13 d1kmma1 c.51.1.1 (A:326-424) H 36.0 30 0.0022 23.0 5.2 57 15-76 3-62 (99)
14 d2dk8a1 a.4.5.85 (A:8-75) DNA- 35.0 22 0.0016 22.5 3.8 45 174-218 3-49 (68)
15 d1nj1a1 c.51.1.1 (A:284-410) P 33.8 12 0.00085 26.8 2.7 30 29-58 29-59 (127)
16 d1zyba1 a.4.5.4 (A:148-220) Pr 33.0 19 0.0014 22.9 3.4 42 253-294 28-69 (73)
17 d1owla2 c.28.1.1 (A:3-204) DNA 32.4 94 0.0068 23.3 8.8 97 27-130 48-150 (202)
18 d1dpua_ a.4.5.16 (A:) C-termin 31.9 19 0.0014 23.0 3.1 56 233-290 2-64 (69)
19 d1v54e_ a.118.11.1 (E:) Cytoch 30.7 20 0.0014 24.7 3.2 65 154-218 20-87 (105)
20 d1i7qb_ c.23.16.1 (B:) Anthran 30.6 66 0.0048 24.1 7.1 75 27-109 8-84 (192)
21 d1mv8a3 c.26.3.1 (A:301-436) G 30.3 14 0.001 26.6 2.6 52 24-75 27-97 (136)
22 d1hc7a1 c.51.1.1 (A:277-403) P 29.6 11 0.00079 27.0 1.8 21 30-50 30-50 (127)
23 d1g5ha1 c.51.1.1 (A:343-469) T 28.3 43 0.0031 23.5 5.1 64 15-78 12-77 (127)
24 d2d1ha1 a.4.5.50 (A:1-109) Hyp 27.0 23 0.0016 24.2 3.2 58 227-285 12-69 (109)
25 d1i5za1 a.4.5.4 (A:138-206) Ca 26.7 23 0.0016 22.0 2.9 40 253-292 30-69 (69)
26 d1h4vb1 c.51.1.1 (B:326-421) H 26.3 73 0.0053 20.8 5.9 57 14-75 2-59 (96)
27 d1s2da_ c.23.14.1 (A:) Purine 26.0 1.1E+02 0.0083 22.2 8.4 86 15-107 7-115 (167)
28 d1mkma1 a.4.5.33 (A:1-75) Tran 25.4 53 0.0038 20.6 4.7 57 247-303 15-72 (75)
29 d3e5ua1 a.4.5.4 (A:148-227) Ch 23.9 16 0.0012 23.5 1.7 43 252-294 30-72 (80)
30 d2gaua1 a.4.5.4 (A:152-232) Tr 23.5 40 0.0029 21.3 3.8 42 253-294 30-71 (81)
31 d2ptza1 c.1.11.1 (A:139-429) E 22.6 23 0.0017 29.3 2.8 33 14-46 225-257 (291)
32 d2akza1 c.1.11.1 (A:140-433) E 21.8 24 0.0018 29.2 2.8 33 14-46 223-255 (294)
33 d1np7a2 c.28.1.1 (A:1-204) Cry 21.0 1.5E+02 0.011 21.9 9.4 91 32-129 67-159 (204)
No 1
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81 E-value=3.8e-21 Score=159.13 Aligned_cols=101 Identities=19% Similarity=0.414 Sum_probs=91.2
Q ss_pred CCCCCcceeEEEeccccccccchH-HHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhh
Q 037752 9 NMNPQIKYDVFLSFRGKDVRHNFI-SHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWC 86 (332)
Q Consensus 9 ~~~~~~~ydvFis~~~~D~~~~f~-~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc 86 (332)
....+++|||||||+++| ..|| ..|...|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|..|.||
T Consensus 6 ~~~~~~~yDvFisys~~D--~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~ 83 (161)
T d1fyva_ 6 ELQRNLQFHAFISYSGHD--SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC 83 (161)
T ss_dssp TSSSCCCEEEEEECCGGG--HHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred HcCCCCeeEEEEecChhH--HHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence 456789999999999999 4577 579999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhcCCeeEeeeeec
Q 037752 87 LNELVKILESK-NKYGQIVVPVFYLV 111 (332)
Q Consensus 87 ~~El~~~~~~~-~~~~~~vlpVfy~v 111 (332)
..|+..++.+. ..+..+++||+++-
T Consensus 84 ~~E~~~a~~~~~~~~~~~lIpV~l~~ 109 (161)
T d1fyva_ 84 HYELYFAHHNLFHEGSNSLILILLEP 109 (161)
T ss_dssp HHHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEec
Confidence 99999988766 45567899999873
No 2
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=3.1e-20 Score=151.64 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=87.4
Q ss_pred CCcceeEEEeccccccccchH-HHHHHHHhc--CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhH
Q 037752 12 PQIKYDVFLSFRGKDVRHNFI-SHLNAALCR--KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCL 87 (332)
Q Consensus 12 ~~~~ydvFis~~~~D~~~~f~-~~L~~~L~~--~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~ 87 (332)
.++.|||||||+++| ..|| ..|...|++ .|+++|+|+ ++.+|+.+.++|.++|++|++.|+|+|++|+.|.||.
T Consensus 2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~ 79 (149)
T d1fyxa_ 2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence 588999999999999 5576 568999976 489999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhcCCeeEeeeeecCC
Q 037752 88 NELVKILESK-NKYGQIVVPVFYLVDP 113 (332)
Q Consensus 88 ~El~~~~~~~-~~~~~~vlpVfy~v~p 113 (332)
.|+..++... +.++..++||+++..+
T Consensus 80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~ 106 (149)
T d1fyxa_ 80 YELDFSHFRLFDENNDAAILILLEPIE 106 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccCc
Confidence 9997766544 5667899999987433
No 3
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=99.38 E-value=3.9e-14 Score=126.53 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=74.9
Q ss_pred ccccccCCCCCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHH
Q 037752 162 ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQN 241 (332)
Q Consensus 162 F~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~ 241 (332)
|+++||....+ +..++++++|+++|+|+||||+++|+.|+.++.+.|.+..+.|......++..+|.+||++||+++|+
T Consensus 194 f~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~ 272 (277)
T d2a5yb3 194 LEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 272 (277)
T ss_dssp HHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHH
T ss_pred HHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHH
Confidence 88999875543 45688999999999999999999999999999999999999998877788999999999999999999
Q ss_pred HHHhh
Q 037752 242 IFLDI 246 (332)
Q Consensus 242 ~fl~~ 246 (332)
||.++
T Consensus 273 c~~~l 277 (277)
T d2a5yb3 273 CVEVL 277 (277)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 99764
No 4
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=69.75 E-value=4.9 Score=27.40 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=41.2
Q ss_pred ceeEEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeec
Q 037752 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSK 78 (332)
Q Consensus 15 ~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~ 78 (332)
+.+|||..-|+... .++-.|...|.+.|+++.+|. .+..+...+..|-..---+++|+-+
T Consensus 3 ~~~V~i~~~g~~~~-~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG~ 62 (97)
T d1wu7a1 3 KKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIFGE 62 (97)
T ss_dssp SCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred CceEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEecCC
Confidence 46899998787765 488999999999999999875 2345555555554432224444443
No 5
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}
Probab=58.13 E-value=11 Score=28.08 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=51.7
Q ss_pred ccccchHHHHHHHHhcCCCeeee--cCCCCCCCCchHHHHHHhhhcceEEEEeecC--CcCChhhHHHHHHHHHhh
Q 037752 26 DVRHNFISHLNAALCRKKIVTFI--DDKLNRGNEISPSLLSAIEGSKISIVIFSKG--YASSRWCLNELVKILESK 97 (332)
Q Consensus 26 D~~~~f~~~L~~~L~~~gi~~f~--d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~--y~~S~wc~~El~~~~~~~ 97 (332)
|....+...+...|...|+.+|. |+..+....|.....+.|.+|++.|.++++- -..+.-+..|+-.+.-..
T Consensus 15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~alg 90 (152)
T d2f62a1 15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 90 (152)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCC
Confidence 33345788999999999999986 3344444557778889999999999999842 223445778887766654
No 6
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=50.65 E-value=3.1 Score=29.39 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=26.9
Q ss_pred cccccchHHHHHHHHhcCCCeeeecC-CCCCCCCch
Q 037752 25 KDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEIS 59 (332)
Q Consensus 25 ~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~ 59 (332)
.|.-..++..|+..|...|+++..|+ +...|..+.
T Consensus 16 ~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~ 51 (111)
T d1atia1 16 RPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYR 51 (111)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSCEEECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHhhhccccceeEeecCCCCHHHHHH
Confidence 33345688999999999999999997 656665554
No 7
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=48.79 E-value=9.2 Score=26.62 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=36.8
Q ss_pred ccccccchHHHHHHHHhcCCCeeeecC-CC-----CCCCCchHHHHHHhhhcceE
Q 037752 24 GKDVRHNFISHLNAALCRKKIVTFIDD-KL-----NRGNEISPSLLSAIEGSKIS 72 (332)
Q Consensus 24 ~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~-----~~g~~i~~~i~~~i~~Sr~~ 72 (332)
..|.|.+=+-.|.+.|.+.|..+...| -+ ..+..+...+.++++.|.+.
T Consensus 29 ~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiI 83 (108)
T d1dlja3 29 SDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANII 83 (108)
T ss_dssp CSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEE
T ss_pred CcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEE
Confidence 567899999999999999999987755 22 22333446788888999853
No 8
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=44.56 E-value=8.1 Score=27.02 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=28.2
Q ss_pred eEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCc
Q 037752 17 DVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEI 58 (332)
Q Consensus 17 dvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i 58 (332)
+|-|---+.|....++..|+..|...||++.+|+ +-..|..+
T Consensus 15 qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~~~~~~g~k~ 57 (113)
T d1nyra1 15 QVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKI 57 (113)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHH
T ss_pred eEEEEEeCcHHHhhhHHHHHHHhhhhccceeecccccccchHH
Confidence 3533323445434589999999999999999987 43444433
No 9
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=43.23 E-value=23 Score=23.47 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred cceeEEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEee
Q 037752 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFS 77 (332)
Q Consensus 14 ~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S 77 (332)
...||||---+++.. ..+-.+...|.+.|+++.+|. .+..+...+..|-..---+++|+-
T Consensus 3 ~~~dv~ii~~~~~~~-~~a~~i~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG 62 (95)
T d1qe0a1 3 ENLDLFIVTMGDQAD-RYAVKLLNHLRHNGIKADKDY---LQRKIKGQMKQADRLGAKFTIVIG 62 (95)
T ss_dssp CCCSEEEEECHHHHH-HHHHHHHHHHHTTTCCEEECC---SCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEeCHHHH-HHHHHHHHHHHHCCCcEEecC---CCCCHHHHHHHHHhcCCCEEEEEc
Confidence 347899986566544 478899999999999998874 334555555555443333445543
No 10
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.31 E-value=26 Score=23.94 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=37.0
Q ss_pred eeEEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCC
Q 037752 16 YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGY 80 (332)
Q Consensus 16 ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y 80 (332)
++|.|--=+++ ...++..++..|+..||++.+|+ .+..+...+..|-..---.++|+.++-
T Consensus 8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~~ki~~a~~~g~p~~iiiG~~E 68 (110)
T d1qf6a1 8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVCGDKE 68 (110)
T ss_dssp SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEECTTT
T ss_pred ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccC---CccchhHHHHHHHHcCCCEEEEECchH
Confidence 45655432333 24589999999999999999986 233454455544433333455555443
No 11
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}
Probab=38.63 E-value=45 Score=24.45 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=53.9
Q ss_pred eeEEEe---ccccccccchHHHHHHHHhcC----CCeeee--cC---CCCCCC------------CchHHHHHHhhhcce
Q 037752 16 YDVFLS---FRGKDVRHNFISHLNAALCRK----KIVTFI--DD---KLNRGN------------EISPSLLSAIEGSKI 71 (332)
Q Consensus 16 ydvFis---~~~~D~~~~f~~~L~~~L~~~----gi~~f~--d~---~~~~g~------------~i~~~i~~~i~~Sr~ 71 (332)
+.||+. |+..+ ..+...+.++|+++ |..+|. |+ ....+. .|...-.++|.+|++
T Consensus 3 k~IYlAgP~F~~~q--~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD~ 80 (156)
T d1f8ya_ 3 KTIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDI 80 (156)
T ss_dssp BCEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCCHHH--HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence 456666 33343 45788999999874 555554 22 111111 245556789999999
Q ss_pred EEEEeecCCcCChhhHHHHHHHHHhhhhcCCeeEeee
Q 037752 72 SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVF 108 (332)
Q Consensus 72 ~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~vlpVf 108 (332)
.|+++......+. +..|+--+.-. +..|+-+.
T Consensus 81 via~ldg~~~D~G-ta~EiG~A~a~----gKpvi~~~ 112 (156)
T d1f8ya_ 81 MLGVYIPDEEDVG-LGMELGYALSQ----GKYVLLVI 112 (156)
T ss_dssp EEEECCGGGCCHH-HHHHHHHHHHT----TCEEEEEE
T ss_pred EEEEeCCCCCCCC-HHHHHHHHHHc----CCcEEEEe
Confidence 9999987655543 66777665554 45666554
No 12
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.41 E-value=41 Score=24.23 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=41.5
Q ss_pred cceeEEEeccccccccchHHHHHHHHhcCCCeeee--------cC-C-----CCCCCCchHHHHHHhhhcceEEEEeecC
Q 037752 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFI--------DD-K-----LNRGNEISPSLLSAIEGSKISIVIFSKG 79 (332)
Q Consensus 14 ~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~--------d~-~-----~~~g~~i~~~i~~~i~~Sr~~i~v~S~~ 79 (332)
.+=.||||-+..| +..|+ .+.+.|.+.|+..|- .+ . +.+...-.+++.+.|++-.+.+||-.++
T Consensus 6 ~~G~v~iSv~d~d-K~~~~-~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~ki~~~~p~i~d~i~~gkidlVINt~~ 83 (138)
T d1a9xa2 6 KHGRALLSVREGD-KERVV-DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTS 83 (138)
T ss_dssp SSSEEEEECCGGG-GTTHH-HHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCC
T ss_pred CCCEEEEEEehhh-hhHHH-HHHHHHHHCCCEEEecCchHHHHHHhccccccccccccccccHhHHHhcCCeEEEEECCC
Confidence 3346999998888 45555 777888888887754 11 1 1111112256778888888888887765
No 13
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.04 E-value=30 Score=23.01 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=37.3
Q ss_pred ceeEEEeccccccccchHHHHHHHHhcC--CCeeeecCCCCCCCCchHHHHHHhh-hcceEEEEe
Q 037752 15 KYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFIDDKLNRGNEISPSLLSAIE-GSKISIVIF 76 (332)
Q Consensus 15 ~ydvFis~~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~~~~g~~i~~~i~~~i~-~Sr~~i~v~ 76 (332)
..||||-.-+++.+ ..+-.+...|+++ |+++.+|. .+..+...+..|-. +.++ ++|+
T Consensus 3 ~vdv~vi~~~~~~~-~~a~~la~~LR~~~~gi~v~~~~---~~~~l~kq~k~A~~~~~~~-~iii 62 (99)
T d1kmma1 3 VVDIYLVASGADTQ-SAAMALAERLRDELPGVKLMTNH---GGGNFKKQFARADKWGARV-AVVL 62 (99)
T ss_dssp SCSEEEECCSTTHH-HHHHHHHHHHHHHSTTCCEEECC---SCCCHHHHHHHHHHHTCSE-EEEC
T ss_pred CCEEEEEECCHHHH-HHHHHHHHHHHhcCCCeEEEEeC---CCCCHHHHHHHHHHhCCCh-hhhc
Confidence 57898887676654 4778888999776 99998875 23455555555544 3333 3444
No 14
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.02 E-value=22 Score=22.50 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHhcCCchHH--HHhhhhhcCCCHHHHHHHHHHHhc
Q 037752 174 AGYLELSNIVIKYAKGIPLAL--KVLGRYLFGRSEEEWENAIEKLKR 218 (332)
Q Consensus 174 ~~~~~l~~~iv~~c~GlPLAl--~~ig~~L~~k~~~~w~~~l~~l~~ 218 (332)
.+..++..+|+..|.+.|-++ ..+...|-.-+.+.--.++++|-.
T Consensus 3 ~~~~~ie~~Ilel~k~~P~GitD~dl~~a~p~v~~~qRv~aiN~LLs 49 (68)
T d2dk8a1 3 ADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLS 49 (68)
T ss_dssp SCHHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred ccHHhHHHHHHHHHHhCCCCCChHHHHHHCcCCCHHHHHHHHHHHHH
Confidence 456788999999999999877 566666766677777777777544
No 15
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=33.82 E-value=12 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=23.6
Q ss_pred cchHHHHHHHHhcCCCeeeecC-CCCCCCCc
Q 037752 29 HNFISHLNAALCRKKIVTFIDD-KLNRGNEI 58 (332)
Q Consensus 29 ~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i 58 (332)
..++..|+..|.+.||++.+|+ +...|..+
T Consensus 29 ~~~a~~l~~~L~~~gi~v~~D~r~~~~g~K~ 59 (127)
T d1nj1a1 29 MEACRELRSRLEAAGFRVHLDDRDIRAGRKY 59 (127)
T ss_dssp HHHHHHHHHHHHTTTCCEEECCCSSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHHHHH
Confidence 4589999999999999999997 44444443
No 16
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=33.05 E-value=19 Score=22.92 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHHhhCCcceeeCCeEEecHH
Q 037752 253 QHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDL 294 (332)
Q Consensus 253 ~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~~~~~~mHdl 294 (332)
++.+.+..+....--.....+..|.+.++|+...+++.++|+
T Consensus 28 lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~~~~~~i~I~d~ 69 (73)
T d1zyba1 28 VKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDA 69 (73)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEESCG
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCEEEEccH
Confidence 578887777754322344579999999999988889998874
No 17
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=32.45 E-value=94 Score=23.29 Aligned_cols=97 Identities=8% Similarity=0.130 Sum_probs=58.3
Q ss_pred cccchH----HHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHHHHhhhhcCC
Q 037752 27 VRHNFI----SHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQ 102 (332)
Q Consensus 27 ~~~~f~----~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~ 102 (332)
.|..|. ..|.+.|+..|+..++- .|+.. +.+.+-+++-.+.-|.++..|.. |-..+-..+.+..+..+.
T Consensus 48 ~r~~fl~~sL~~L~~~L~~~g~~L~i~----~G~~~-~~l~~l~~~~~i~~v~~~~~~~~--~~~~rd~~i~~~~~~~~i 120 (202)
T d1owla2 48 ARVAYLQGCLQELQQRYQQAGSRLLLL----QGDPQ-HLIPQLAQQLQAEAVYWNQDIEP--YGRDRDGQVAAALKTAGI 120 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEE----ESCHH-HHHHHHHHHTTCSEEEEECCCSH--HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhccccceEEE----Eeeee-ccchhhccccccceeEEeeeccc--hhhhHHHHHhhhhhhccc
Confidence 355555 56777888889988764 45544 55666667777778888888863 433333333333333343
Q ss_pred eeEeeeee--cCCCcccccccchhhhHHHH
Q 037752 103 IVVPVFYL--VDPSDVRNQTGTFGDSFSKL 130 (332)
Q Consensus 103 ~vlpVfy~--v~p~dv~~q~g~f~~~f~~~ 130 (332)
.+.-+-.. +.|.++..+.|..-+.|-..
T Consensus 121 ~~~~~~~~~L~~p~~v~~~~g~~~~vFTpF 150 (202)
T d1owla2 121 RAVQLWDQLLHSPDQILSGSGNPYSVYGPF 150 (202)
T ss_dssp EEEEECCSSSSCTTTCCCTTSCCCSSHHHH
T ss_pred cccccccccccCcccccCCCCCchhhhHHH
Confidence 43332212 67888888887665555433
No 18
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.85 E-value=19 Score=22.96 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=40.6
Q ss_pred cCCCHHHHHHHHhhcccC--CCCCHHHHHHHHHHcCCC---hhHHHHHHhhCCcceee--CCeEE
Q 037752 233 DGLDDEEQNIFLDIACFF--KGQHRDFVMNFQDACGFS---AKIGICDLVDKSLVIIS--NNKIT 290 (332)
Q Consensus 233 d~L~~~~k~~fl~~a~fp--~~~~~~~l~~lw~~~g~~---~~~~l~~Lv~~sLl~~~--~~~~~ 290 (332)
++|.+..+++|-++.-.| .|+.++.+.+.+. |+. ....++.|.+.++|-.. ++.|+
T Consensus 2 nGLs~~q~~V~~~i~s~~~~eGi~~~el~~~l~--~~~~~~i~~aid~L~~eG~IYsTiDddHfk 64 (69)
T d1dpua_ 2 NGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLK--HMSVSSIKQAVDFLSNEGHIYSTVDDDHFK 64 (69)
T ss_dssp CCSCHHHHHHHHHHHHCCCTTTEEHHHHHHHST--TSCHHHHHHHHHHHHHTTSEEECSSTTEEE
T ss_pred CCCCHHHHHHHHHHHhCCCccCcCHHHHHHHcc--CCCHHHHHHHHHHHHhCCceecccccchhc
Confidence 478888889888886666 4588888888764 443 33479999999998543 55553
No 19
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=30.66 E-value=20 Score=24.73 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=42.7
Q ss_pred ccccccCCccccccCCC-CCCcchHHHHHHHHHHhcCCchHHHHhhhhhcC--CCHHHHHHHHHHHhc
Q 037752 154 LSGFDSHGISRNAFGQN-HPAAGYLELSNIVIKYAKGIPLALKVLGRYLFG--RSEEEWENAIEKLKR 218 (332)
Q Consensus 154 ~~g~~~~~F~~~AF~~~-~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~--k~~~~w~~~l~~l~~ 218 (332)
+.||+.+.-++..|+.. .|.|....-+-+.+++..-.|+|++++-+.-.. -..+.|..+++.++.
T Consensus 20 iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqelkp 87 (105)
T d1v54e_ 20 IDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRP 87 (105)
T ss_dssp CCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Confidence 44555433333444433 577788888888999999999999998875432 135567777776543
No 20
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}
Probab=30.60 E-value=66 Score=24.08 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred cccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecC--CcCChhhHHHHHHHHHhhhhcCCee
Q 037752 27 VRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKG--YASSRWCLNELVKILESKNKYGQIV 104 (332)
Q Consensus 27 ~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~--y~~S~wc~~El~~~~~~~~~~~~~v 104 (332)
..++|+-.|...|++.|..+-.-. .+.-.+...+.+...+..++++|+. ......+..++.+.+ ..+..|
T Consensus 8 ~~DSFt~ni~~~l~~lG~~~~v~~----~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~~~l----~~~iPi 79 (192)
T d1i7qb_ 8 NVDSFTYNLVDQLRASGHQVVIYR----NQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRL----RGQLPI 79 (192)
T ss_dssp CSCSSHHHHHHHHHHTTCEEEEEE----TTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHHHHH----BTTBCE
T ss_pred CCCcHHHHHHHHHHHCCCeEEEEe----CCCcccccHHHHHhcCCCeEEecCccccccccccchhhHHhh----hcCccE
Confidence 345799999999999997764421 1222344556677778889999854 344444444443333 233455
Q ss_pred Eeeee
Q 037752 105 VPVFY 109 (332)
Q Consensus 105 lpVfy 109 (332)
+-|.+
T Consensus 80 LGICl 84 (192)
T d1i7qb_ 80 IGICL 84 (192)
T ss_dssp EEETH
T ss_pred EeeeH
Confidence 55543
No 21
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.29 E-value=14 Score=26.56 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=36.3
Q ss_pred ccccccchHHHHHHHHhcCCCeeeecC-CCC----CC--------------CCchHHHHHHhhhcceEEEE
Q 037752 24 GKDVRHNFISHLNAALCRKKIVTFIDD-KLN----RG--------------NEISPSLLSAIEGSKISIVI 75 (332)
Q Consensus 24 ~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~----~g--------------~~i~~~i~~~i~~Sr~~i~v 75 (332)
-.|+|.+-+-.+.+.|..+|..+...| -+. .+ .....++.+++.+|++.|+.
T Consensus 27 t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~ivi~ 97 (136)
T d1mv8a3 27 TDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLG 97 (136)
T ss_dssp CCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEEC
T ss_pred CcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEEEEE
Confidence 457899999999999999999988765 111 11 11123567888899875443
No 22
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]}
Probab=29.59 E-value=11 Score=27.01 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.5
Q ss_pred chHHHHHHHHhcCCCeeeecC
Q 037752 30 NFISHLNAALCRKKIVTFIDD 50 (332)
Q Consensus 30 ~f~~~L~~~L~~~gi~~f~d~ 50 (332)
.++..|+..|...|+++.+|+
T Consensus 30 ~~a~~i~~~L~~~girv~~Dd 50 (127)
T d1hc7a1 30 EAAQGLRQALLAQGLRVHLDD 50 (127)
T ss_dssp HHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHcCCeeEEec
Confidence 589999999999999999986
No 23
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.32 E-value=43 Score=23.46 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=35.7
Q ss_pred ceeEEEecc--ccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeec
Q 037752 15 KYDVFLSFR--GKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSK 78 (332)
Q Consensus 15 ~ydvFis~~--~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~ 78 (332)
.|+|-|--- +.+.-..++..|+..|.+.|+.++++..-.++..+...+..+-..-=-.++|+.+
T Consensus 12 P~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v~~~~~D~~~~~lg~k~~~a~~~giP~~iiiG~ 77 (127)
T d1g5ha1 12 PIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTE 77 (127)
T ss_dssp SCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHHhcCceeeeeecCCCcCHHHHHHHHHHhCCcEEEEEcC
Confidence 455655432 2233334789999999999999976431113444444444443332224555544
No 24
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=26.96 E-value=23 Score=24.16 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=41.4
Q ss_pred HHHHhhcCCCHHHHHHHHhhcccCCCCCHHHHHHHHHHcCCChhHHHHHHhhCCcceee
Q 037752 227 VLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS 285 (332)
Q Consensus 227 ~L~~Syd~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~ 285 (332)
.+..-| +|++....+|..+.-.+..++...+.....-..-.....++.|.+++||...
T Consensus 12 ~l~~~~-gLs~~~~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T d2d1ha1 12 EIRCCY-KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHH-TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhc-CcCHHHHHHHHHHHHcCCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEe
Confidence 344445 5888888888888766666888777776644333345579999999999754
No 25
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.74 E-value=23 Score=22.05 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHHhhCCcceeeCCeEEec
Q 037752 253 QHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMH 292 (332)
Q Consensus 253 ~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~~~~~~mH 292 (332)
++.+.+..+....---....|..|.+.++|+..++++.+|
T Consensus 30 lt~~~lA~~~G~sRetvsr~L~~l~~~glI~~~~~~I~I~ 69 (69)
T d1i5za1 30 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVY 69 (69)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEEC
Confidence 5778877777543223445799999999999988888877
No 26
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.31 E-value=73 Score=20.75 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=35.5
Q ss_pred cceeEEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhh-hcceEEEE
Q 037752 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIE-GSKISIVI 75 (332)
Q Consensus 14 ~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~-~Sr~~i~v 75 (332)
..+||||-.-+++.. ..+-.+...|+ +|+.+.+|. .+..+...+..|-. +.+..|+|
T Consensus 2 ~~pdv~iv~~~~~~~-~~a~~i~~~LR-~~~~~~~~~---~~~~l~kq~k~A~~~~~~~~iii 59 (96)
T d1h4vb1 2 KGPDLYLIPLTEEAV-AEAFYLAEALR-PRLRAEYAL---APRKPAKGLEEALKRGAAFAGFL 59 (96)
T ss_dssp CCCSEEEEESSHHHH-HHHHHHHHHHT-TTSCEEECS---SCCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEEEEcCHHHH-HHHHHHHHHHH-cCceEEEEC---CCCCHHHHHHHHHHcCCCEEEEe
Confidence 347898887666543 46778888994 699887764 23456556655543 33443333
No 27
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}
Probab=26.04 E-value=1.1e+02 Score=22.20 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=53.6
Q ss_pred ceeEEEe---ccccccccchHHHHHHHHhcCC--Ceeee--cCCC--------CCC--------CCchHHHHHHhhhcce
Q 037752 15 KYDVFLS---FRGKDVRHNFISHLNAALCRKK--IVTFI--DDKL--------NRG--------NEISPSLLSAIEGSKI 71 (332)
Q Consensus 15 ~ydvFis---~~~~D~~~~f~~~L~~~L~~~g--i~~f~--d~~~--------~~g--------~~i~~~i~~~i~~Sr~ 71 (332)
+.-|||. |+..+ ...+..+.++|++.| +++|. ++.. +.+ ..|...-.++|++|++
T Consensus 7 ~~kIYLAgP~F~~~~--~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~ 84 (167)
T d1s2da_ 7 TGKIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATC 84 (167)
T ss_dssp CEEEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSE
T ss_pred CceEEEECCCCCHHH--HHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence 4557776 22222 457889999999988 45553 1111 011 1234456689999999
Q ss_pred EEEEeecCCcCChhhHHHHHHHHHhhhhcCCeeEee
Q 037752 72 SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPV 107 (332)
Q Consensus 72 ~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~vlpV 107 (332)
.|+++......+. ...|+--+... +..|+.+
T Consensus 85 vIA~ldg~~~D~G-Ta~EiG~A~a~----gKPvi~~ 115 (167)
T d1s2da_ 85 GVFLYDMDQLDDG-SAFEIGFMRAM----HKPVILV 115 (167)
T ss_dssp EEEEEESSSCCHH-HHHHHHHHHHT----TCCEEEE
T ss_pred EEEEeCCCCCCcc-HHHHHHHHHHC----CCeEEEE
Confidence 9999988776553 56677665554 3456554
No 28
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.45 E-value=53 Score=20.63 Aligned_cols=57 Identities=12% Similarity=-0.036 Sum_probs=36.1
Q ss_pred cccCCCCCHHHHHHHHHHcCCChhHHHHHHhhCCcceee-CCeEEecHHHHHHHHHHH
Q 037752 247 ACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-NNKITMHDLLQEMGREIV 303 (332)
Q Consensus 247 a~fp~~~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~-~~~~~mHdlv~~~a~~i~ 303 (332)
+--+.+.+..++.+...-..--....+..|.+.++++.+ +++|.+=.-+-.+|..+.
T Consensus 15 a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l~~lg~~~l 72 (75)
T d1mkma1 15 VKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVL 72 (75)
T ss_dssp HHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCCEeecHHHHHHHHHHH
Confidence 333444565555444422111233468999999999987 788988776677776654
No 29
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=23.90 E-value=16 Score=23.50 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHcCCChhHHHHHHhhCCcceeeCCeEEecHH
Q 037752 252 GQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDL 294 (332)
Q Consensus 252 ~~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~~~~~~mHdl 294 (332)
.++.+.+..+....--.....+..|.+.++|+...+++.++|+
T Consensus 30 ~lt~~elA~~~g~sretvsr~l~~l~~~glI~~~~~~i~I~d~ 72 (80)
T d3e5ua1 30 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNL 72 (80)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----CEESCH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCEEEEcCH
Confidence 3577887777754333344579999999999988888999885
No 30
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=23.52 E-value=40 Score=21.33 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHHhhCCcceeeCCeEEecHH
Q 037752 253 QHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDL 294 (332)
Q Consensus 253 ~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~~~~~~mHdl 294 (332)
++.+.+..+....--.....|..|.+.++|+...+++.++|.
T Consensus 30 lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~~~i~I~d~ 71 (81)
T d2gaua1 30 LSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDC 71 (81)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCEEEEcCH
Confidence 567777666644222344479999999999988889999874
No 31
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]}
Probab=22.63 E-value=23 Score=29.29 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=28.3
Q ss_pred cceeEEEeccccccccchHHHHHHHHhcCCCee
Q 037752 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIVT 46 (332)
Q Consensus 14 ~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~ 46 (332)
..|-+.||||+-+|.++|+.+|..++...-|++
T Consensus 225 ~g~~~iiShRSGETeD~~iaDLAVg~~a~~iK~ 257 (291)
T d2ptza1 225 NGWSVMVSHRSGETEDTYIADLVVALGSGQIKT 257 (291)
T ss_dssp TTCEEEEECCSBCCSCCHHHHHHHHHTCSEEEC
T ss_pred cCeeEEeeCCCCCcCcchHHHHHHHhCCCceec
Confidence 347899999999999999999999998775544
No 32
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=21.83 E-value=24 Score=29.17 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=28.1
Q ss_pred cceeEEEeccccccccchHHHHHHHHhcCCCee
Q 037752 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIVT 46 (332)
Q Consensus 14 ~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~ 46 (332)
..|.+.||||+-+|.++|+.+|..++...-|++
T Consensus 223 ~g~~~ivShRsGETeD~~iaDLAVg~~a~~iK~ 255 (294)
T d2akza1 223 NGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 255 (294)
T ss_dssp TTCEEEEECCSBCCSCCHHHHHHHHHTCSEEEC
T ss_pred cCCcEEeeCCCCCcCcchHhHHHHhcCCCeeee
Confidence 357899999999999999999999998765443
No 33
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=21.05 E-value=1.5e+02 Score=21.89 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHHHHhhhhcCCeeEeeeee-
Q 037752 32 ISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYL- 110 (332)
Q Consensus 32 ~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~vlpVfy~- 110 (332)
+..|.+.|++.|+...+- .|+.. +.+.+-+++-.+.-|.++..|.. +....-..+.+..+..+..+.-.-..
T Consensus 67 L~~L~~~L~~~g~~L~v~----~G~~~-~~l~~l~~~~~i~~V~~n~~~~~--~e~~rd~~v~~~l~~~~i~~~~~~~~~ 139 (204)
T d1np7a2 67 VQNLAESLQKVGNKLLVT----TGLPE-QVIPQIAKQINAKTIYYHREVTQ--EELDVERNLVKQLTILGIEAKGYWGST 139 (204)
T ss_dssp HHHHHHHHHHTTCCEEEE----ESCHH-HHHHHHHHHTTEEEEEEECCCSH--HHHHHHHHHHHHHHHHTCEEEEECCSS
T ss_pred HHHHHHHHHhccchhhhh----hhhhH-HHHHHHHHHhhhhheeeeccccH--HHHHHHHHHhhhhccceeeeEeccCcc
Confidence 467788888999887653 45543 56667777778888888887764 44433344444333333333222111
Q ss_pred -cCCCcccccccchhhhHHH
Q 037752 111 -VDPSDVRNQTGTFGDSFSK 129 (332)
Q Consensus 111 -v~p~dv~~q~g~f~~~f~~ 129 (332)
+.|.++....|..-+.|-.
T Consensus 140 L~~p~~l~~~~~~~~~vFTp 159 (204)
T d1np7a2 140 LCHPEDLPFSIQDLPDLFTK 159 (204)
T ss_dssp SSCGGGSSSCGGGCCSSHHH
T ss_pred ccChhhccCCCCCCCccchH
Confidence 6788888877765555543
Done!