BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037758
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 32 GPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLKN- 90
GPDWSG++ + LAH+RL+IVD +G QPLYN+ KT V+ VNGEIYNH+ LR + +
Sbjct: 31 GPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDR 90
Query: 91 HQFRTGSDCEVIAHL 105
+QF+TGSDCEVI L
Sbjct: 91 YQFQTGSDCEVILAL 105
>pdb|3OOJ|A Chain A, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|B Chain B, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|C Chain C, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|D Chain D, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|E Chain E, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|F Chain F, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|G Chain G, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|H Chain H, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
Length = 608
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 41 HGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSD 98
HG +AH R A S + + +VV NG I NH+ LRE+LK + F + +D
Sbjct: 64 HGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETD 123
Query: 99 CEVIAHL 105
EVIAHL
Sbjct: 124 TEVIAHL 130
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|2BPL|A Chain A, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|B Chain B, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|C Chain C, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
Length = 608
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 41 HGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSD 98
HG +AH R A S + + +VV NG I NH+ LRE+LK + F + +D
Sbjct: 64 HGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETD 123
Query: 99 CEVIAHL 105
EVIAHL
Sbjct: 124 TEVIAHL 130
>pdb|2J6H|A Chain A, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2J6H|B Chain B, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2VF4|X Chain X, E. Coli Glucosamine-6-P Synthase
pdb|2VF5|X Chain X, Glucosamine-6-Phosphate Synthase In Complex With
Glucosamine-6-Phosphate
Length = 608
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 41 HGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSD 98
HG +AH R A S + + +VV NG I NH+ LRE+LK + F + +D
Sbjct: 64 HGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETD 123
Query: 99 CEVIAHL 105
EVIAHL
Sbjct: 124 TEVIAHL 130
>pdb|1XFF|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFF|B Chain B, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFG|A Chain A, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
pdb|1XFG|B Chain B, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
Length = 240
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 41 HGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSD 98
HG +AH R A S + + +VV NG I NH+ LRE+LK + F + +D
Sbjct: 64 HGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETD 123
Query: 99 CEVIAHL 105
EVIAHL
Sbjct: 124 TEVIAHL 130
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 61 QPLY---NEDKTVVVTVNGEIYNHKQLREQLKNHQ--FRTGSDCEVIAHL 105
QPL + ++ + NG + N QL++QL+N F+T SD EV+AHL
Sbjct: 85 QPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHL 134
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 61 QPLY---NEDKTVVVTVNGEIYNHKQLREQLKNHQ--FRTGSDCEVIAHL 105
QPL + ++ + NG + N QL++QL+N F+T SD EV+AHL
Sbjct: 85 QPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHL 134
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 48 HQRLAIVDPTSGDQPLYN------EDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEV 101
RL I + D +Y + +T TV EIY RE + +F+ G D EV
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118
Query: 102 IAHL 105
+ +
Sbjct: 119 VCRV 122
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 48 HQRLAIVDPTSGDQPLYN------EDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEV 101
RL I + D +Y + +T TV EIY RE + +F+ G D EV
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 116
Query: 102 IAHL 105
+ +
Sbjct: 117 VCRV 120
>pdb|1AIL|A Chain A, N-Terminal Fragment Of Ns1 Protein From Influenza A
Virus
Length = 73
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 40 YHGDCYLAHQRLAIVDPTSGDQPLYN 65
+ DC+L H R +VD GD P +
Sbjct: 9 FQVDCFLWHVRKQVVDQELGDAPFLD 34
>pdb|1NS1|A Chain A, Rna-Binding Domain Of Non-Structural Protein 1 From
Influenza Virus, Nmr, 16 Structures
pdb|1NS1|B Chain B, Rna-Binding Domain Of Non-Structural Protein 1 From
Influenza Virus, Nmr, 16 Structures
Length = 73
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 40 YHGDCYLAHQRLAIVDPTSGDQPLYN 65
+ DC+L H R +VD GD P +
Sbjct: 9 FQVDCFLWHVRKQVVDQELGDAPFLD 34
>pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota
In Complex With Dna And Dttp
pdb|1T3N|B Chain B, Structure Of The Catalytic Core Of Dna Polymerase Iota
In Complex With Dna And Dttp
pdb|1ZET|A Chain A, X-Ray Data Do Not Support Hoogsteen Base-Pairing During
Replication By Human Polymerase Iota
Length = 388
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 38 LHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGE 77
+H DC+ A + I +P D+PL + K +VVT N E
Sbjct: 5 VHVDLDCFYAQVEM-ISNPELKDKPLGVQQKYLVVTCNYE 43
>pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
pdb|3H4B|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With
Template UT AND Incoming Datp
pdb|3H4D|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With
Template UT AND Incoming Dgtp
Length = 390
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 38 LHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGE 77
+H DC+ A + I +P D+PL + K +VVT N E
Sbjct: 7 VHVDLDCFYAQVEM-ISNPELKDKPLGVQQKYLVVTCNYE 45
>pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With
Template UT
Length = 389
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 38 LHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGE 77
+H DC+ A + I +P D+PL + K +VVT N E
Sbjct: 6 VHVDLDCFYAQVEM-ISNPELKDKPLGVQQKYLVVTCNYE 44
>pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
pdb|2DPJ|A Chain A, Structure Of Hpoli With Dna And Dttp
pdb|2FLN|A Chain A, Binary Complex Of Catalytic Core Of Human Dna Polymerase
Iota With Dna (Template A)
pdb|2FLP|A Chain A, Binary Complex Of The Catalytic Core Of Human Dna
Polymerase Iota With Dna (Template G)
pdb|2FLL|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Dna
And Dttp
pdb|3EPG|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine
pdb|3EPI|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine And Incoming Ttp
pdb|3G6V|A Chain A, Dna Synthesis Across An Abasic Lesion By Human Dna
Polymerase-Iota
pdb|3G6X|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dgtp With An
Abasic Site At The Templating Position
pdb|3G6Y|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dttp With An
Abasic Site At The Templating Position
pdb|3GV7|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dttp
pdb|3GV8|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dgtp
pdb|3NGD|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
pdb|3OSN|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
pdb|3Q8P|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite
8-Oxo-Guanine
pdb|3Q8Q|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite
8-Oxo-Guanine
pdb|3Q8R|B Chain B, Human Dna Polymerase Iota Incorporating Dgtp Opposite
8-Oxo-Guanine
pdb|3Q8S|B Chain B, Human Dna Polymerase Iota Incorporating Dttp Opposite
8-Oxo-Guanine
pdb|4EBC|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
pdb|4EBD|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
pdb|4EBE|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
pdb|4FS1|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dttp
By Human Polymerase Iota
pdb|4FS2|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dctp
By Human Polymerase Iota
pdb|4EYH|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
pdb|4EYI|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
Length = 420
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 38 LHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGE 77
+H DC+ A + I +P D+PL + K +VVT N E
Sbjct: 31 VHVDLDCFYAQVEM-ISNPELKDKPLGVQQKYLVVTCNYE 69
>pdb|1T6R|A Chain A, Solution Structure Of Tm1442, A Putative Anti Sigma Factor
Antagonist In Phosphorylated State
Length = 110
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 63 LYNEDKTVVVTVNGEI--YNHKQLREQLKNHQFRTGSDCEVIAHL 105
+ +D +V V G+I YN +L+EQL+N T S +++ L
Sbjct: 8 IVEQDDKAIVRVQGDIDAYNSSELKEQLRNF-ISTTSKKKIVLDL 51
>pdb|1VC1|A Chain A, Crystal Structure Of The Tm1442 Protein From Thermotoga
Maritima, A Homolog Of The Bacillus Subtilis General
Stress Response Anti-Anti-Sigma Factor Rsbv
pdb|1VC1|B Chain B, Crystal Structure Of The Tm1442 Protein From Thermotoga
Maritima, A Homolog Of The Bacillus Subtilis General
Stress Response Anti-Anti-Sigma Factor Rsbv
pdb|1SBO|A Chain A, Solution Structure Of Putative Anti Sigma Factor
Antagonist From Thermotoga Maritima (Tm1442)
Length = 110
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 63 LYNEDKTVVVTVNGEI--YNHKQLREQLKNHQFRTGSDCEVIAHL 105
+ +D +V V G+I YN +L+EQL+N T S +++ L
Sbjct: 8 IVEQDDKAIVRVQGDIDAYNSSELKEQLRNF-ISTTSKKKIVLDL 51
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 44 CYLAHQRLAIVDPT-SGDQPLYNEDKTVVVTVNGEIYNHKQLR-EQLKNHQF 93
C L+ R+A++ P +G L N ++ +GE+Y H+ R +K H F
Sbjct: 690 CSLS-SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 740
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 44 CYLAHQRLAIVDPT-SGDQPLYNEDKTVVVTVNGEIYNHKQLR-EQLKNHQF 93
C L+ R+A++ P +G L N ++ +GE+Y H+ R +K H F
Sbjct: 696 CSLS-SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 746
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 44 CYLAHQRLAIVDPT-SGDQPLYNEDKTVVVTVNGEIYNHKQLR-EQLKNHQF 93
C L+ R+A++ P +G L N ++ +GE+Y H+ R +K H F
Sbjct: 696 CSLS-SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 746
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,067,890
Number of Sequences: 62578
Number of extensions: 108968
Number of successful extensions: 208
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 24
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)