Query 037758
Match_columns 105
No_of_seqs 109 out of 1281
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09431 asnB asparagine synth 100.0 1.3E-31 2.9E-36 198.6 11.3 105 1-105 1-106 (554)
2 PTZ00077 asparagine synthetase 100.0 1.3E-31 2.8E-36 199.6 10.7 105 1-105 1-112 (586)
3 PLN02549 asparagine synthase ( 100.0 5.2E-31 1.1E-35 196.0 10.8 105 1-105 1-105 (578)
4 TIGR03104 trio_amidotrans aspa 100.0 7.8E-31 1.7E-35 195.8 11.2 104 1-105 1-107 (589)
5 COG0367 AsnB Asparagine syntha 100.0 3.9E-31 8.4E-36 195.6 9.3 104 1-105 1-106 (542)
6 TIGR03108 eps_aminotran_1 exos 100.0 1.4E-30 3.1E-35 195.5 10.7 105 1-105 1-107 (628)
7 PRK08525 amidophosphoribosyltr 100.0 1.7E-30 3.6E-35 188.6 10.2 101 1-105 1-134 (445)
8 cd00714 GFAT Glutamine amidotr 100.0 8.2E-30 1.8E-34 170.3 9.3 100 2-105 1-131 (215)
9 PRK07272 amidophosphoribosyltr 100.0 1.5E-29 3.3E-34 184.7 10.2 101 1-105 11-145 (484)
10 PRK07349 amidophosphoribosyltr 100.0 2.3E-29 5E-34 184.2 10.1 102 1-105 33-167 (500)
11 PRK06388 amidophosphoribosyltr 100.0 2.7E-29 5.8E-34 183.1 9.9 101 1-105 19-151 (474)
12 PRK08341 amidophosphoribosyltr 100.0 2.9E-29 6.2E-34 181.7 9.9 99 1-104 4-132 (442)
13 PRK07631 amidophosphoribosyltr 100.0 4.5E-29 9.7E-34 181.9 9.6 101 1-105 11-144 (475)
14 PRK09123 amidophosphoribosyltr 100.0 7.3E-29 1.6E-33 181.1 9.7 101 1-105 21-155 (479)
15 PRK06781 amidophosphoribosyltr 100.0 2.2E-28 4.7E-33 178.3 10.0 101 1-105 11-144 (471)
16 PRK00331 glucosamine--fructose 100.0 2.4E-28 5.3E-33 182.9 9.9 101 1-105 1-132 (604)
17 PRK09246 amidophosphoribosyltr 100.0 3.1E-28 6.8E-33 178.9 9.7 101 1-105 1-134 (501)
18 cd00712 AsnB Glutamine amidotr 100.0 1E-27 2.2E-32 160.5 11.3 103 2-105 1-105 (220)
19 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 2.2E-28 4.9E-33 159.6 7.8 97 1-105 1-101 (181)
20 PTZ00295 glucosamine-fructose- 100.0 3.1E-28 6.7E-33 183.3 8.9 101 1-105 24-162 (640)
21 PLN02440 amidophosphoribosyltr 100.0 4.9E-28 1.1E-32 177.0 9.6 101 1-105 1-134 (479)
22 PRK05793 amidophosphoribosyltr 99.9 9.5E-28 2E-32 175.2 10.3 103 1-105 14-149 (469)
23 TIGR01536 asn_synth_AEB aspara 99.9 1.3E-27 2.8E-32 174.6 10.5 102 4-105 1-105 (467)
24 PRK07847 amidophosphoribosyltr 99.9 1E-27 2.2E-32 175.9 9.5 102 1-105 23-163 (510)
25 PTZ00394 glucosamine-fructose- 99.9 1.2E-27 2.7E-32 180.6 10.1 105 1-105 1-164 (670)
26 cd01907 GlxB Glutamine amidotr 99.9 1.8E-27 3.8E-32 162.0 9.0 101 2-105 1-142 (249)
27 PLN02981 glucosamine:fructose- 99.9 2.9E-27 6.3E-32 178.9 9.7 105 1-105 1-154 (680)
28 TIGR01135 glmS glucosamine--fr 99.9 3.1E-27 6.7E-32 177.0 9.2 100 2-105 1-131 (607)
29 COG0449 GlmS Glucosamine 6-pho 99.9 4.3E-27 9.4E-32 173.6 7.9 100 1-105 1-131 (597)
30 COG0034 PurF Glutamine phospho 99.9 3.4E-26 7.3E-31 163.6 9.2 103 1-105 4-140 (470)
31 cd00715 GPATase_N Glutamine am 99.9 1.6E-25 3.4E-30 152.7 9.5 100 2-105 1-133 (252)
32 TIGR01134 purF amidophosphorib 99.9 1.5E-25 3.3E-30 162.7 9.8 101 2-105 1-133 (442)
33 KOG0572 Glutamine phosphoribos 99.9 1.4E-24 3.1E-29 152.3 7.1 103 1-105 1-137 (474)
34 KOG0571 Asparagine synthase (g 99.9 3.7E-24 8E-29 152.2 7.0 104 1-105 1-104 (543)
35 cd00352 Gn_AT_II Glutamine ami 99.9 3.9E-23 8.5E-28 137.3 10.8 101 2-104 1-134 (220)
36 KOG1268 Glucosamine 6-phosphat 99.9 1.1E-22 2.5E-27 147.3 9.0 105 1-105 1-147 (670)
37 PF13522 GATase_6: Glutamine a 99.8 1.4E-19 3.1E-24 113.0 5.1 73 33-105 1-79 (133)
38 TIGR03442 conserved hypothetic 99.7 5.4E-17 1.2E-21 110.8 4.5 99 1-104 1-153 (251)
39 PF13537 GATase_7: Glutamine a 99.6 5.8E-16 1.3E-20 95.6 2.0 57 48-104 1-60 (125)
40 cd01908 YafJ Glutamine amidotr 99.5 6.9E-15 1.5E-19 100.7 3.8 60 44-105 82-146 (257)
41 PF00310 GATase_2: Glutamine a 99.4 6.1E-13 1.3E-17 94.9 9.0 55 44-104 197-271 (361)
42 COG0067 GltB Glutamate synthas 99.2 6.3E-11 1.4E-15 84.3 7.3 54 45-104 205-262 (371)
43 cd01909 betaLS_CarA_N Glutamin 99.2 1.4E-11 3E-16 81.6 3.5 44 60-105 44-89 (199)
44 PF13230 GATase_4: Glutamine a 99.1 5.7E-11 1.2E-15 82.0 3.4 96 1-104 1-135 (271)
45 KOG0573 Asparagine synthase [A 99.1 2.7E-10 5.9E-15 82.4 6.8 78 1-81 1-82 (520)
46 cd01910 Wali7 This domain is p 98.6 4E-08 8.7E-13 66.0 4.2 41 63-105 66-106 (224)
47 cd00713 GltS Glutamine amidotr 98.5 7.9E-08 1.7E-12 69.8 3.9 55 44-104 203-278 (413)
48 COG0121 Predicted glutamine am 98.3 2.5E-06 5.3E-11 58.5 6.0 81 1-84 1-116 (252)
49 PRK11750 gltB glutamate syntha 94.4 0.043 9.3E-07 45.9 3.3 39 44-88 214-254 (1485)
50 TIGR03823 FliZ flagellar regul 83.3 0.99 2.2E-05 29.0 2.0 19 68-86 33-51 (168)
51 PRK11582 flagella biosynthesis 83.3 1 2.2E-05 29.0 2.0 19 68-86 33-51 (169)
52 cd00713 GltS Glutamine amidotr 76.1 6.1 0.00013 29.4 4.4 35 2-36 1-36 (413)
53 PF04641 Rtf2: Rtf2 RING-finge 71.7 3 6.5E-05 28.8 1.9 27 60-89 41-67 (260)
54 PF09147 DUF1933: Domain of un 70.5 2 4.3E-05 28.4 0.7 43 60-104 41-85 (201)
55 KOG0399 Glutamate synthase [Am 68.3 2.6 5.7E-05 35.7 1.1 30 44-79 286-317 (2142)
56 COG4892 Predicted heme/steroid 65.4 6 0.00013 22.1 1.8 15 66-80 15-29 (81)
57 PF10636 hemP: Hemin uptake pr 53.4 15 0.00032 17.9 1.8 14 67-80 12-25 (38)
58 COG4256 HemP Hemin uptake prot 53.3 10 0.00022 20.4 1.4 19 62-80 32-50 (63)
59 KOG0898 40S ribosomal protein 51.2 6.3 0.00014 24.8 0.4 23 68-90 98-120 (152)
60 PRK10183 hypothetical protein; 48.4 16 0.00034 19.4 1.6 14 67-80 30-43 (56)
61 PF10777 YlaC: Inner membrane 42.7 11 0.00025 24.1 0.6 20 69-88 95-114 (155)
62 COG4815 Uncharacterized protei 41.8 56 0.0012 20.5 3.5 31 50-80 57-90 (145)
63 PHA02104 hypothetical protein 41.5 9.6 0.00021 21.3 0.2 12 70-81 52-63 (89)
64 PF02960 K1: K1 glycoprotein; 38.1 3.1 6.7E-05 25.3 -2.3 8 1-8 83-90 (130)
65 PF09894 DUF2121: Uncharacteri 37.3 28 0.0006 23.3 1.8 18 71-88 21-38 (194)
66 PF00173 Cyt-b5: Cytochrome b5 37.2 24 0.00052 19.0 1.4 19 67-85 13-31 (76)
67 PF09466 Yqai: Hypothetical pr 34.7 18 0.00039 20.1 0.6 29 67-95 37-68 (71)
68 PRK06764 hypothetical protein; 33.6 46 0.00099 19.3 2.1 16 66-81 82-97 (105)
69 COG1763 MobB Molybdopterin-gua 31.4 69 0.0015 20.7 2.9 31 1-33 1-31 (161)
70 KOG1110 Putative steroid membr 28.2 44 0.00095 22.1 1.6 22 67-88 72-93 (183)
71 KOG0537 Cytochrome b5 [Energy 27.4 52 0.0011 20.3 1.8 21 67-87 18-38 (124)
72 PF02839 CBM_5_12: Carbohydrat 27.0 46 0.001 15.7 1.3 10 71-80 15-24 (41)
73 PF08496 Peptidase_S49_N: Pept 25.5 24 0.00052 22.7 0.1 36 68-104 99-137 (155)
74 PRK05863 sulfur carrier protei 24.2 94 0.002 16.5 2.3 22 67-88 29-50 (65)
75 COG0120 RpiA Ribose 5-phosphat 23.7 1E+02 0.0023 21.1 2.8 28 62-89 167-195 (227)
76 PF01589 Alpha_E1_glycop: Alph 23.6 54 0.0012 24.9 1.5 16 68-83 238-253 (502)
77 KOG1372 GDP-mannose 4,6 dehydr 22.7 27 0.00059 24.7 -0.1 16 71-86 204-219 (376)
78 cd04906 ACT_ThrD-I_1 First of 22.7 84 0.0018 17.5 2.0 22 81-102 55-78 (85)
79 PF10411 DsbC_N: Disulfide bon 22.5 71 0.0015 16.6 1.5 19 61-81 34-53 (57)
80 COG1671 Uncharacterized protei 21.5 68 0.0015 20.6 1.5 24 66-89 83-106 (150)
81 PRK00124 hypothetical protein; 21.5 70 0.0015 20.5 1.6 23 66-88 84-106 (151)
82 PRK07440 hypothetical protein; 21.0 1.3E+02 0.0028 16.3 2.5 17 67-83 33-49 (70)
No 1
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.97 E-value=1.3e-31 Score=198.60 Aligned_cols=105 Identities=52% Similarity=0.938 Sum_probs=93.7
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|+++...........+.+|+.+|+|||||++|+|..++++|||+||+++|+..+.||+.+.++.++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999754322112467899999999999999999999999999999999999889999988888999999999999
Q ss_pred hHHHHHHhc-CCCcccCChhhhhccC
Q 037758 81 HKQLREQLK-NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~-g~~~~~~sD~evil~~ 105 (105)
+.+|+++|. .+.|++.||+|||+++
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~l 106 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILAL 106 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHH
Confidence 999999997 6889999999999874
No 2
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=199.58 Aligned_cols=105 Identities=52% Similarity=0.922 Sum_probs=92.0
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe-----CCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEc
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH-----GDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVN 75 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~-----~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~n 75 (105)
||||+|+++...........+.+|+.+|+|||||++|+|.. ++++|||.||+++|...+.||+.+.+++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999754322222356788999999999999999986 5689999999999988899999988889999999
Q ss_pred eeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 76 GEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 76 GeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|||||+.+|+++|. |+.|++.||+|||+++
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~l 112 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHL 112 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 99999999999996 8999999999999874
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.97 E-value=5.2e-31 Score=196.00 Aligned_cols=105 Identities=83% Similarity=1.362 Sum_probs=93.1
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|+++.+.........+.+|+.+|+|||||++|+|..++.+|+|.||++.+...+.||+.+.++.++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999754322223466889999999999999999999999999999999998889999988888899999999999
Q ss_pred hHHHHHHhcCCCcccCChhhhhccC
Q 037758 81 HKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+.+|+++|..+.|+|.||+|||+++
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~l 105 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHL 105 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999966789999999999874
No 4
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.97 E-value=7.8e-31 Score=195.81 Aligned_cols=104 Identities=32% Similarity=0.563 Sum_probs=92.9
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCC-CCCCCeecCCCcEEEEEceeEc
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPT-SGDQPLYNEDKTVVVTVNGEIY 79 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~-~~~QP~~~~~~~~~l~~nGeI~ 79 (105)
||||+|++..+... .....+.+|+.+|+|||||++|+|..+++++||+||++.+.+ .+.||+.+++++++++||||||
T Consensus 1 McGI~G~~~~~~~~-~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQA-PDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCc-chHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 99999999654322 234678999999999999999999999999999999999985 7899999888889999999999
Q ss_pred ChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 80 NHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 80 N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|+.||+++|. |+.|++.||+||++++
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~ 107 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKA 107 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 9999999997 8999999999999863
No 5
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.97 E-value=3.9e-31 Score=195.65 Aligned_cols=104 Identities=43% Similarity=0.685 Sum_probs=94.7
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|+++.++ .......+.+|..+|.|||||.+|+|...++.+||.||++++...+.||+....++++++|||||||
T Consensus 1 MCGI~g~~~~~~-~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKN-LIDAKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeecccc-cccchHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999999752 2223678999999999999999999999999999999999999989999988667799999999999
Q ss_pred hHHHHHHhc--CCCcccCChhhhhccC
Q 037758 81 HKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.|||++|. |+.|.|.||+|||+++
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~ 106 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTL 106 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHH
Confidence 999999998 9999999999999863
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.97 E-value=1.4e-30 Score=195.53 Aligned_cols=105 Identities=45% Similarity=0.751 Sum_probs=93.0
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|++..+.........+.+|+.+|+|||||++|+|..++++|||+||++.+...+.||+.+.+++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999654221123466899999999999999999999999999999999998778999998888999999999999
Q ss_pred hHHHHHHhc--CCCcccCChhhhhccC
Q 037758 81 HKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.||+++|. |+.|++.||+||++++
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~ 107 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHA 107 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHH
Confidence 999999997 8999999999999863
No 7
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.7e-30 Score=188.63 Aligned_cols=101 Identities=24% Similarity=0.434 Sum_probs=88.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|+++.+ ++++||+||++
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998642 34667789999999999999998843 36899999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.+ ..++++++|||+|||+.+||++|. |+.|+|+||+|||+++
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l 134 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHL 134 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 9964 68999986 567899999999999999999997 8999999999999874
No 8
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.96 E-value=8.2e-30 Score=170.28 Aligned_cols=100 Identities=33% Similarity=0.482 Sum_probs=87.4
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~~ 54 (105)
|||+|+++... ....+..|+.+|+|||||++|+++. +.+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999998532 2367889999999999999999986 3468999999999
Q ss_pred CCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.. .+.|||...+++++++|||+|||+.+|+++|. |+.+++.||+|+++++
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l 131 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHL 131 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 974 58899987667899999999999999999997 8999999999999864
No 9
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.5e-29 Score=184.67 Aligned_cols=101 Identities=27% Similarity=0.447 Sum_probs=88.1
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------CceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------DCYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------~~~l~~~rl~ 52 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999998642 34668899999999999999998842 2689999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.|.. .+.||+.. ..++++++|||+|+|+.+||++|. |+.|++.||+|||++|
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~L 145 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHL 145 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 99964 58999975 467899999999999999999997 8999999999999874
No 10
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.3e-29 Score=184.19 Aligned_cols=102 Identities=25% Similarity=0.367 Sum_probs=87.5
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++.+.. ....+..++.+|+|||||++|+++.+ ++++||+||+|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985422 34667789999999999999998733 25899999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|||+.+||++|. |+.|++.||+|||+++
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~l 167 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFA 167 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9975 57999975 347899999999999999999997 8999999999999874
No 11
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.7e-29 Score=183.09 Aligned_cols=101 Identities=29% Similarity=0.422 Sum_probs=87.6
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC--------------------------CceEeeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG--------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~--------------------------~~~l~~~rl~~~ 54 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+|.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999998643 34678899999999999999999843 258999999999
Q ss_pred CCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.. .+.||+.. ..+.++++|||+|||+.+||++|. |+.|++.||+||++++
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~l 151 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAE 151 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 964 67899963 457899999999999999999997 8999999999999874
No 12
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.9e-29 Score=181.74 Aligned_cols=99 Identities=25% Similarity=0.392 Sum_probs=86.8
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC--------------------------CceEeeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG--------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~--------------------------~~~l~~~rl~~~ 54 (105)
||||+|+++. + ....+..++.+|+|||||++|+++.+ ++++||+||+|.
T Consensus 4 ~CGI~G~~~~-~----~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYSE-N----APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEECC-C----cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 8999999983 2 23678899999999999999997733 468999999999
Q ss_pred CCCCCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 55 DPTSGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 55 ~~~~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
|...+.||+.. ..+.++++|||+|||+.+||++|. |+.|+|.||+|||++
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~ 132 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGI 132 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 98788999965 357899999999999999999997 899999999999976
No 13
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=4.5e-29 Score=181.87 Aligned_cols=101 Identities=30% Similarity=0.477 Sum_probs=87.0
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998542 24667789999999999999998632 35789999999
Q ss_pred eCCC--CCCCCee--cCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLY--NEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~--~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+. +..++++++|||+|||+.+||++|. |+.|++.||+||+++|
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~L 144 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHL 144 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9975 5789995 4567899999999999999999997 8999999999999874
No 14
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=7.3e-29 Score=181.15 Aligned_cols=101 Identities=30% Similarity=0.457 Sum_probs=87.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------CceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------DCYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------~~~l~~~rl~ 52 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998642 33567889999999999999998733 2478999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.|.. .+.|||.. ..++++++|||+|+|+.+||++|. |+.|++.||+|||++|
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~L 155 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHL 155 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 99964 68899976 357899999999999999999997 8999999999999874
No 15
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=2.2e-28 Score=178.31 Aligned_cols=101 Identities=30% Similarity=0.497 Sum_probs=86.6
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998643 23567789999999999999998632 24789999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|+|+.+||++|. |+.|++.||+|||+++
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~L 144 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHL 144 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9975 67899953 457899999999999999999997 8999999999999874
No 16
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.95 E-value=2.4e-28 Score=182.87 Aligned_cols=101 Identities=34% Similarity=0.496 Sum_probs=88.4
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|++.. +++++||+||++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997532 2367889999999999999999872 346899999999
Q ss_pred eCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.+..++++++|||+|||+.+||++|. |+.|.+.||+||++++
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l 132 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHL 132 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHH
Confidence 9964 58899987678899999999999999999997 8999999999999864
No 17
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=3.1e-28 Score=178.90 Aligned_cols=101 Identities=30% Similarity=0.521 Sum_probs=86.2
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|+++. +++++||+||+|
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999998632 2356788999999999999999983 357899999999
Q ss_pred eCCC--CCCCCee-cCCCcEEEEEceeEcChHHHHHHhc---CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLY-NEDKTVVVTVNGEIYNHKQLREQLK---NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~-~~~~~~~l~~nGeI~N~~~L~~~l~---g~~~~~~sD~evil~~ 105 (105)
.|.. .+.|||. ....+++|+|||+|+|+.+||++|. ++.|++.||+|||+++
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~l 134 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNV 134 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHH
Confidence 9974 6899997 3445699999999999999999997 4689999999999864
No 18
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.95 E-value=1e-27 Score=160.48 Aligned_cols=103 Identities=45% Similarity=0.753 Sum_probs=91.4
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcCh
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~ 81 (105)
|||+|+++.+... ...+.+..|+.+|+|||||+.+++..++++++|+|+++.+...+.||+...+++++++|||+|||+
T Consensus 1 cGI~g~~~~~~~~-~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGAS-VDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCc-chHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 9999999754321 235778999999999999999999999999999999999977789999887788999999999999
Q ss_pred HHHHHHhc--CCCcccCChhhhhccC
Q 037758 82 KQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 82 ~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.+|+++|. ++.+++.||+|+++++
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~ 105 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHL 105 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHH
Confidence 99999997 7889999999999853
No 19
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.95 E-value=2.2e-28 Score=159.63 Aligned_cols=97 Identities=29% Similarity=0.403 Sum_probs=81.5
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----CceEeeeeeeeeCCCCCCCCeecCCCcEEEEEce
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----DCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNG 76 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nG 76 (105)
||||+|+++...........+.+|+.+|+|||||+.+++..+ ++.++|+||++++...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 999999997543211123568899999999999999999873 4789999999999877899998877789999999
Q ss_pred eEcChHHHHHHhcCCCcccCChhhhhccC
Q 037758 77 EIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 77 eI~N~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
||||+.+|++ +.||+|+|+++
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l 101 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFEL 101 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHH
Confidence 9999999864 78999999864
No 20
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.95 E-value=3.1e-28 Score=183.33 Aligned_cols=101 Identities=31% Similarity=0.440 Sum_probs=87.9
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------------CceE
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------------DCYL 46 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------------~~~l 46 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999998542 34678899999999999999999832 1378
Q ss_pred eeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 47 AHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 47 ~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
||+||++.|.. .+.||+....++++++|||+|||+.+||++|. |+.|+++||+|||+++
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~l 162 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANL 162 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHH
Confidence 99999999964 68899987668899999999999999999997 8999999999999874
No 21
>PLN02440 amidophosphoribosyltransferase
Probab=99.95 E-value=4.9e-28 Score=177.02 Aligned_cols=101 Identities=30% Similarity=0.473 Sum_probs=86.9
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|+++. +++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997532 2367889999999999999999872 236799999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.+.. .+.|||.. ..++++++|||+|+|+.+|+++|. |+.|++.||+|+|+++
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~l 134 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHL 134 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 9974 68999975 446799999999999999999997 8899999999999864
No 22
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=9.5e-28 Score=175.17 Aligned_cols=103 Identities=27% Similarity=0.431 Sum_probs=87.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++.++ .+ ....+..++.+|+|||||++|++..+ ++++||+|+++
T Consensus 14 mCGI~Gi~~~~~-~~-~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNN-ID-VASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCC-cc-HHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 999999998642 11 34567789999999999999998643 25789999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|+|+.+||++|. |+.|++.||+|+|+++
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~l 149 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNL 149 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 9975 57899976 357899999999999999999997 8899999999999874
No 23
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.95 E-value=1.3e-27 Score=174.55 Aligned_cols=102 Identities=47% Similarity=0.763 Sum_probs=90.1
Q ss_pred EEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCce-EeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcChH
Q 037758 4 ILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLH-YHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHK 82 (105)
Q Consensus 4 I~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~-~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~~ 82 (105)
|+|+|+.++........+.+|+.+|+|||||+.|+| ..++++|||+||++.+...+.||+.+.+++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 678887665432234578999999999999999999 8899999999999999877799999888899999999999999
Q ss_pred HHHHHhc--CCCcccCChhhhhccC
Q 037758 83 QLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 83 ~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+|+++|. |+.|++.||+|+++++
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~ 105 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHL 105 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHH
Confidence 9999997 8999999999999863
No 24
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1e-27 Score=175.88 Aligned_cols=102 Identities=19% Similarity=0.330 Sum_probs=86.1
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC---------------------------ceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD---------------------------CYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~---------------------------~~l~~~rl~~ 53 (105)
||||+|+++..+. ....+..++.+|+|||||++|+++.++ +++||+||++
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999986422 346677899999999999999987432 4799999999
Q ss_pred eCCC--CCCCCeecC---CCcEEEEEceeEcChHHHHHHhc--CC-----CcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNE---DKTVVVTVNGEIYNHKQLREQLK--NH-----QFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~---~~~~~l~~nGeI~N~~~L~~~l~--g~-----~~~~~sD~evil~~ 105 (105)
.+.. .+.|||... .++++++|||+|||+.+|+++|. |+ .|++.||+|+|+++
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~L 163 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTAL 163 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHH
Confidence 9975 578999752 57899999999999999999997 65 48999999999874
No 25
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.95 E-value=1.2e-27 Score=180.57 Aligned_cols=105 Identities=26% Similarity=0.345 Sum_probs=88.7
Q ss_pred CeEEEEEEcCCC--CchhHHHHHHHHHhhccccCCCCCCceEe-----------------C-------------------
Q 037758 1 MCGILAVFGCID--NSQAKRSRIIELSRRLRHRGPDWSGLHYH-----------------G------------------- 42 (105)
Q Consensus 1 McGI~g~~~~~~--~~~~~~~~~~~ml~~l~~RG~d~~g~~~~-----------------~------------------- 42 (105)
||||+|+++... ........+...|.+|+|||+|++|++.. +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 999999998640 00024467889999999999999999886 1
Q ss_pred -----------------CceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhh
Q 037758 43 -----------------DCYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEV 101 (105)
Q Consensus 43 -----------------~~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~ev 101 (105)
++++||+||++.|.. .+.||+.+.+++++++|||+|||+.+||++|. |+.|+|+||+||
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 136899999999974 67899988778899999999999999999997 899999999999
Q ss_pred hccC
Q 037758 102 IAHL 105 (105)
Q Consensus 102 il~~ 105 (105)
|+||
T Consensus 161 i~~l 164 (670)
T PTZ00394 161 ISVL 164 (670)
T ss_pred HHHH
Confidence 9864
No 26
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.95 E-value=1.8e-27 Score=162.05 Aligned_cols=101 Identities=31% Similarity=0.473 Sum_probs=85.6
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCC-CCCCceEeC------------------------------------Cc
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGP-DWSGLHYHG------------------------------------DC 44 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~-d~~g~~~~~------------------------------------~~ 44 (105)
|||+|+++..... .....+..|+.+|+|||| |++|++..+ .+
T Consensus 1 CGI~G~~~~~~~~-~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEP-FVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCcc-ccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 9999999863211 134678899999999999 999999852 36
Q ss_pred eEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 45 YLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 45 ~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
++||+|++|.+.. .+.|||.. ++++++|||+|||+.+||++|. |+.|.+.||+|+++++
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~l 142 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYY 142 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 7899999999864 58899976 4899999999999999999997 8899999999999763
No 27
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.94 E-value=2.9e-27 Score=178.89 Aligned_cols=105 Identities=30% Similarity=0.423 Sum_probs=87.9
Q ss_pred CeEEEEEEcCCC--CchhHHHHHHHHHhhccccCCCCCCceEeC------------------------------------
Q 037758 1 MCGILAVFGCID--NSQAKRSRIIELSRRLRHRGPDWSGLHYHG------------------------------------ 42 (105)
Q Consensus 1 McGI~g~~~~~~--~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~------------------------------------ 42 (105)
||||+|+++... ........+...|.+|+|||+|++|+++.+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 999999998531 011245778899999999999999999832
Q ss_pred ------CceEeeeeeeeeCCC--CCCCCeecC-CCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 43 ------DCYLAHQRLAIVDPT--SGDQPLYNE-DKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 43 ------~~~l~~~rl~~~~~~--~~~QP~~~~-~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
++++||+||++.|.. .+.||+... .+.++++|||+|||+.+||++|. |+.|+++||+|||+|+
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~l 154 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKL 154 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHH
Confidence 257899999999974 578999763 36799999999999999999997 8999999999999874
No 28
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.94 E-value=3.1e-27 Score=177.03 Aligned_cols=100 Identities=36% Similarity=0.522 Sum_probs=87.3
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~~ 54 (105)
|||+|+++... ....+..|+.+|+|||||++|++.. +++++||+||++.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999998432 2367889999999999999999983 3458999999999
Q ss_pred CCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.. .+.|||....++++++|||+|||+.+||++|. |+.|++.||+|||+++
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l 131 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHL 131 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHH
Confidence 964 58899987777899999999999999999997 8999999999999864
No 29
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=4.3e-27 Score=173.57 Aligned_cols=100 Identities=35% Similarity=0.533 Sum_probs=88.8
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC---------------------------ceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD---------------------------CYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~---------------------------~~l~~~rl~~ 53 (105)
||||+|+++.+.. ....+.+.|++|.|||.|++|+++.++ +++||+||+|
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999975432 457899999999999999999998742 5699999999
Q ss_pred eCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.+|+.+ +++++||||-|-|+.+||++|. |+.|+|+||+|||.||
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hL 131 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHL 131 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHH
Confidence 9965 68899966 8899999999999999999998 9999999999999885
No 30
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.93 E-value=3.4e-26 Score=163.55 Aligned_cols=103 Identities=29% Similarity=0.509 Sum_probs=89.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC----------------------------ceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD----------------------------CYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----------------------------~~l~~~rl~ 52 (105)
||||+|+|+.++. .....++.+|.+|||||+|+.||++.++ .++||+|++
T Consensus 4 ~CGV~Gi~~~~~~--~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKDN--NAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCcc--chHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 8999999997642 2457789999999999999999988765 267999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.|.. .+.||+.. +.+.++|+|||.|.|..+||++|. |..|+|.||+|+++++
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l 140 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHL 140 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHH
Confidence 99976 57899965 445699999999999999999998 8889999999999874
No 31
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.93 E-value=1.6e-25 Score=152.67 Aligned_cols=100 Identities=30% Similarity=0.495 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC---------------------------ceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD---------------------------CYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~---------------------------~~l~~~rl~~~ 54 (105)
|||+|+++..+ ....+..|+.+|+|||||++|++..++ ++|+|+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998642 236678999999999999999986432 57999999999
Q ss_pred CCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.. .+.|||.. ..++++++|||+|+|+.+|+++|. ++.+++.||+|+++++
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l 133 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHL 133 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 975 58899975 347899999999999999999996 7888999999999863
No 32
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.93 E-value=1.5e-25 Score=162.71 Aligned_cols=101 Identities=28% Similarity=0.480 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~~ 54 (105)
|||||+++..+. ....+..|+.+|+|||||++|++..+ ++++||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999986421 34667789999999999999998632 468999999999
Q ss_pred CCC--CCCCCeec-CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYN-EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~-~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.. .+.|||.. ..++++++|||+|+|+.+|+++|. |+.|++.||+|+++++
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~l 133 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHL 133 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 974 58899974 345599999999999999999997 8889999999999864
No 33
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.4e-24 Score=152.35 Aligned_cols=103 Identities=27% Similarity=0.431 Sum_probs=86.6
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC----------------------------ceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD----------------------------CYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----------------------------~~l~~~rl~ 52 (105)
||||+|++..++.. .-..+.....+|||||+|+.||.+.++ .++||.|++
T Consensus 1 eCGv~Gi~~a~~~~--~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEAS--RLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCccc--cCcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 99999999865542 223455555799999999999998763 568999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.|.. .+.|||+. ..+.++++|||++.|+++||++|. |+.+.|.||+|+|+++
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~ 137 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQL 137 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHH
Confidence 99987 67899965 456699999999999999999997 8899999999999874
No 34
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.90 E-value=3.7e-24 Score=152.20 Aligned_cols=104 Identities=69% Similarity=1.121 Sum_probs=92.2
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||++++.... .........+....+.|||||-+|.+......++|.||++++++.+.||+...++.+++..||||||
T Consensus 1 MCGI~Av~~~~~-~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGHED-SEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeecccc-hhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 999999998432 2233455677778999999999999998888999999999999989999999888888889999999
Q ss_pred hHHHHHHhcCCCcccCChhhhhccC
Q 037758 81 HKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+.+||+.+..++|+|.||+|+|++|
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~l 104 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHL 104 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeeh
Confidence 9999999988999999999999985
No 35
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.90 E-value=3.9e-23 Score=137.28 Aligned_cols=101 Identities=37% Similarity=0.579 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCCchhHHHHH--HHHHhhccccCCCCCCceEeC---------------------------CceEeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRI--IELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLA 52 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~--~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~ 52 (105)
|||+|+++...... .... ..|+..++|||||++|++..+ .++++|+|++
T Consensus 1 Cgi~g~~~~~~~~~--~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~a 78 (220)
T cd00352 1 CGIFGIVGADGAAS--LLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLA 78 (220)
T ss_pred CEEEEEECCCCcch--hhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEee
Confidence 99999998654321 1222 479999999999999999875 5789999999
Q ss_pred eeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 53 IVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 53 ~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
+.+.. .+.|||....++++++|||+|+|+.+|+++|. ++.+++.||+|++++
T Consensus 79 t~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~ 134 (220)
T cd00352 79 TNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILH 134 (220)
T ss_pred ecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHH
Confidence 99863 68899987657899999999999999999997 678899999999975
No 36
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.88 E-value=1.1e-22 Score=147.33 Aligned_cols=105 Identities=32% Similarity=0.465 Sum_probs=89.7
Q ss_pred CeEEEEEEcCCCCc--hhHHHHHHHHHhhccccCCCCCCceEeCC-----------------------------------
Q 037758 1 MCGILAVFGCIDNS--QAKRSRIIELSRRLRHRGPDWSGLHYHGD----------------------------------- 43 (105)
Q Consensus 1 McGI~g~~~~~~~~--~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----------------------------------- 43 (105)
||||||+.++--.. ..+.+++.+.+++|.|||.|+.|++.+++
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 99999999864322 23456788889999999999999998763
Q ss_pred ceEeeeeeeeeCCC--CCCCCeec-CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYN-EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~-~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
++++|+||+|.|.. .+.+|+.+ +.+.++++|||-|.|+++|+..|. |+.|++++|+|++.+|
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL 147 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKL 147 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHH
Confidence 57999999999965 67899964 567799999999999999999998 9999999999998764
No 37
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.79 E-value=1.4e-19 Score=112.95 Aligned_cols=73 Identities=40% Similarity=0.692 Sum_probs=64.1
Q ss_pred CCCCCc--eEeCCceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 33 PDWSGL--HYHGDCYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 33 ~d~~g~--~~~~~~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
||..++ +..++++|+|+|+++.|.. .+.|||.+..++++++|||+|+|+.+|+++|. |+.|++.||+|+|+++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~l 79 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAAL 79 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 677777 7778899999999999976 45599966678899999999999999999997 8899999999999864
No 38
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.67 E-value=5.4e-17 Score=110.79 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=75.4
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCC------------CCCCceEeC-----C--------------------
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGP------------DWSGLHYHG-----D-------------------- 43 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~------------d~~g~~~~~-----~-------------------- 43 (105)
||+|+|+++..- .....+.+....|.+|+. |++|+.... .
T Consensus 1 MCr~~gy~g~~~---~l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAPV---SLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCCe---eHHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 999999998631 133556666666666654 999987642 1
Q ss_pred ------ceEeeeeeeeeCC-C--CCCCCeecCCCcEEEEEceeEcChH-----HHHHHhc--CC-CcccCChhhhhcc
Q 037758 44 ------CYLAHQRLAIVDP-T--SGDQPLYNEDKTVVVTVNGEIYNHK-----QLREQLK--NH-QFRTGSDCEVIAH 104 (105)
Q Consensus 44 ------~~l~~~rl~~~~~-~--~~~QP~~~~~~~~~l~~nGeI~N~~-----~L~~~l~--g~-~~~~~sD~evil~ 104 (105)
.+++|.|+++.|. . .+.|||.. ++++++|||.|.|++ +|+.+|. ++ .+++.||+|++.+
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~ 153 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFA 153 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHH
Confidence 4689999999984 3 58899975 689999999999997 5667775 53 7899999998865
No 39
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.58 E-value=5.8e-16 Score=95.64 Aligned_cols=57 Identities=47% Similarity=0.798 Sum_probs=26.4
Q ss_pred eeeeeeeCCCCCCCCee-cCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 48 HQRLAIVDPTSGDQPLY-NEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 48 ~~rl~~~~~~~~~QP~~-~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
|+||++.+...+.||+. +.+++++++|||+|||+++|+++|. |+.+.+.+|+|++++
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~ 60 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILH 60 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHH
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHH
Confidence 88999977778999998 5678899999999999999999997 688899999999865
No 40
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.53 E-value=6.9e-15 Score=100.65 Aligned_cols=60 Identities=27% Similarity=0.300 Sum_probs=52.0
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--C-CCcccCChhhhhccC
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--N-HQFRTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g-~~~~~~sD~evil~~ 105 (105)
++++|+|+++.+.. .+.|||.. ++++++|||.|+|+.+|+..|. + +.+.+.||+|+++++
T Consensus 82 ~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~l 146 (257)
T cd01908 82 LVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFAL 146 (257)
T ss_pred EEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHH
Confidence 46899999999954 57899976 4799999999999999999997 4 678999999998763
No 41
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.45 E-value=6.1e-13 Score=94.90 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=45.8
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCccc----------------CChhhhhc
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRT----------------GSDCEVIA 103 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~----------------~sD~evil 103 (105)
.+++|+|++|.+.. ...|||. +++|||||-|...++.++. +..+.+ .||+|++.
T Consensus 197 ~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~ 270 (361)
T PF00310_consen 197 FAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLD 270 (361)
T ss_dssp EEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHH
T ss_pred EEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHH
Confidence 46899999999876 5789995 8999999999999999997 777766 99999885
Q ss_pred c
Q 037758 104 H 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 271 ~ 271 (361)
T PF00310_consen 271 N 271 (361)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.20 E-value=6.3e-11 Score=84.35 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=42.4
Q ss_pred eEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 45 YLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 45 ~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
+++|+|++|.-.. ..+|||. .+||||||-++.-.++.+. ++.+++.+|+|++.+
T Consensus 205 ~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~ 262 (371)
T COG0067 205 ALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAK 262 (371)
T ss_pred EEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHH
Confidence 4677777665433 4567773 3599999999999999998 899999999998764
No 43
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.20 E-value=1.4e-11 Score=81.60 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=37.6
Q ss_pred CCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 60 DQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 60 ~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|+. ..+++++++||||||+.+|+++|. ++.|++.||+|||+++
T Consensus 44 ~~~~--~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~ 89 (199)
T cd01909 44 VQVA--RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLL 89 (199)
T ss_pred eeEe--eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHH
Confidence 3555 335799999999999999999997 7889999999999864
No 44
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=99.10 E-value=5.7e-11 Score=82.04 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=38.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhcccc------CCCCCCceEeCC-----------------------------ce
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHR------GPDWSGLHYHGD-----------------------------CY 45 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~R------G~d~~g~~~~~~-----------------------------~~ 45 (105)
||-++|+-..... . +...+..++.| =||++|+...++ ..
T Consensus 1 MC~Llg~s~~~p~-~-----~~~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~ 74 (271)
T PF13230_consen 1 MCRLLGMSSNRPT-D-----INFSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLF 74 (271)
T ss_dssp -----------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEE
T ss_pred Ccccccccccccc-c-----cccccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEE
Confidence 9999999764321 1 11222333333 389999877543 35
Q ss_pred EeeeeeeeeCCC--CCCCCeecC--CCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhcc
Q 037758 46 LAHQRLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAH 104 (105)
Q Consensus 46 l~~~rl~~~~~~--~~~QP~~~~--~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~ 104 (105)
++|.|.++.|.. .+.|||... .++++++|||.|.+++.++... +.....||+|.+..
T Consensus 75 laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~ 135 (271)
T PF13230_consen 75 LAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFC 135 (271)
T ss_dssp EEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHH
T ss_pred EEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHH
Confidence 899999999865 578999753 3579999999999987776332 44678999998754
No 45
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.10 E-value=2.7e-10 Score=82.36 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=57.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC----ceEeeeeeeeeCCCCCCCCeecCCCcEEEEEce
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD----CYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNG 76 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nG 76 (105)
||||+.-+.++.+.. ......+|...+..||||.......+. +.+.-.-|+..| ....||++.. +++++.|||
T Consensus 1 MCGI~~s~~~~~~l~-~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d-~~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALN-SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVED-DRYVFLFNG 77 (520)
T ss_pred CceEEEeecCCcccc-ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecc-cceEEEecc
Confidence 999999998765432 345567888899999999987655443 334445577777 2468998664 558999999
Q ss_pred eEcCh
Q 037758 77 EIYNH 81 (105)
Q Consensus 77 eI~N~ 81 (105)
||||.
T Consensus 78 eIyn~ 82 (520)
T KOG0573|consen 78 EIYNG 82 (520)
T ss_pred eeccC
Confidence 99984
No 46
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=98.64 E-value=4e-08 Score=66.00 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=33.8
Q ss_pred eecCCCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhccC
Q 037758 63 LYNEDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 63 ~~~~~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+....+++++++||||||+.+|++++ +. .++.||+|+|+++
T Consensus 66 l~~~~~~~~~vfnGeIyN~~eLr~~l-g~-~~t~sD~evIl~l 106 (224)
T cd01910 66 LFAVKDDIFCLFQGHLDNLGSLKQQY-GL-SKTANEAMLVIEA 106 (224)
T ss_pred EECCCCCEEEEEEeEEcCHHHHHHHh-CC-CCCCcHHHHHHHH
Confidence 44556789999999999999999998 34 3788999998753
No 47
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.54 E-value=7.9e-08 Score=69.77 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=43.4
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CC-----------------CcccCChhhhh
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NH-----------------QFRTGSDCEVI 102 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~-----------------~~~~~sD~evi 102 (105)
.+++|+|++|.... ...|||. +|+|||||.|...+++++. .. ...+.||+|++
T Consensus 203 ~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~l 276 (413)
T cd00713 203 FALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASL 276 (413)
T ss_pred EEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHH
Confidence 57899999998755 5789994 4899999999999999884 11 12358999987
Q ss_pred cc
Q 037758 103 AH 104 (105)
Q Consensus 103 l~ 104 (105)
.+
T Consensus 277 d~ 278 (413)
T cd00713 277 DN 278 (413)
T ss_pred HH
Confidence 54
No 48
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=98.29 E-value=2.5e-06 Score=58.54 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhcc---ccCCCCCCceEeCC----------------------------ceEeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLR---HRGPDWSGLHYHGD----------------------------CYLAHQ 49 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~---~RG~d~~g~~~~~~----------------------------~~l~~~ 49 (105)
||-++|+.+..... .....+...... -.=+|++|+....+ ..++|.
T Consensus 1 MCrlLg~~g~~p~~---~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHv 77 (252)
T COG0121 1 MCRLLGMHGNPPTD---SLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHV 77 (252)
T ss_pred CceeeeecCCCcch---hhhhhccchhhccCCCCCCCcceEEEEcCCccEEEeCCCccccchhhhhcccccCccEEEEEE
Confidence 99999998854211 111111111111 12368899876542 458999
Q ss_pred eeeeeCCC--CCCCCeecC--CCcEEEEEceeEcChHHH
Q 037758 50 RLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 50 rl~~~~~~--~~~QP~~~~--~~~~~l~~nGeI~N~~~L 84 (105)
|.++.|.. .+.+||..+ ...+.++|||.|.+++.+
T Consensus 78 R~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 78 RKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred eccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 99999955 578999763 335799999999998884
No 49
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=94.43 E-value=0.043 Score=45.95 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=27.7
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHh
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l 88 (105)
.++.|.|++|.-.. ...|||. .++|||||=-..--+.++
T Consensus 214 ~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm 254 (1485)
T PRK11750 214 ICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWA 254 (1485)
T ss_pred EEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHH
Confidence 56899999977543 5678882 479999997555444444
No 50
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=83.34 E-value=0.99 Score=28.99 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.2
Q ss_pred CcEEEEEceeEcChHHHHH
Q 037758 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~~ 86 (105)
+++.+|+||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999887765
No 51
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=83.26 E-value=1 Score=28.97 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.2
Q ss_pred CcEEEEEceeEcChHHHHH
Q 037758 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~~ 86 (105)
+++.+|+||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999887765
No 52
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=76.07 E-value=6.1 Score=29.38 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCc-hhHHHHHHHHHhhccccCCCCC
Q 037758 2 CGILAVFGCIDNS-QAKRSRIIELSRRLRHRGPDWS 36 (105)
Q Consensus 2 cGI~g~~~~~~~~-~~~~~~~~~ml~~l~~RG~d~~ 36 (105)
|||.-+...++.. ....+...++|..|.|||--++
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa~~a 36 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVGA 36 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCcccC
Confidence 8996666554432 2233456677888999996443
No 53
>PF04641 Rtf2: Rtf2 RING-finger
Probab=71.71 E-value=3 Score=28.82 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=21.9
Q ss_pred CCCeecCCCcEEEEEceeEcChHHHHHHhc
Q 037758 60 DQPLYNEDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 60 ~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~ 89 (105)
.||+.. ++|....|.|||...|-..|.
T Consensus 41 ~~pL~~---PiV~d~~G~LynKeaile~Ll 67 (260)
T PF04641_consen 41 QQPLED---PIVSDRLGRLYNKEAILEFLL 67 (260)
T ss_pred CCccCC---CeeeCCCCeeEcHHHHHHHHH
Confidence 578844 466678899999999999886
No 54
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=70.49 E-value=2 Score=28.36 Aligned_cols=43 Identities=26% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 60 DQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 60 ~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
-|.+....+...+. |.|||..-|+.-.. .-....-+|+|+++.
T Consensus 41 ~qk~~~~~~tayLI--GsiyNr~~L~~lag~~eg~a~v~nd~ElL~~ 85 (201)
T PF09147_consen 41 FQKMRFERGTAYLI--GSIYNRRFLRGLAGMWEGHAYVLNDAELLYT 85 (201)
T ss_dssp EEEEEETTEEEEEE--S--S-HHHHHHHHTTT-GGGGG--HHHHHHH
T ss_pred eeEEEecCccEEEE--EEeccHHHHHHhhheeeccceeeccHHHHHH
Confidence 35554544443333 99999999987765 222345689998863
No 55
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=68.28 E-value=2.6 Score=35.67 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=22.4
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEc
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIY 79 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~ 79 (105)
.+|.|.|+++.-.. .-.||+. +++|||||-
T Consensus 286 ~AlvHsRFSTNTfPsWdrAQPmR------~l~HNGEIN 317 (2142)
T KOG0399|consen 286 FALVHSRFSTNTFPSWDRAQPMR------FLAHNGEIN 317 (2142)
T ss_pred ceeeeeccccCCCCCccccccch------hhhccCcee
Confidence 57889999876433 5678872 589999995
No 56
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=65.38 E-value=6 Score=22.10 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=12.8
Q ss_pred CCCcEEEEEceeEcC
Q 037758 66 EDKTVVVTVNGEIYN 80 (105)
Q Consensus 66 ~~~~~~l~~nGeI~N 80 (105)
+++...|++||++|+
T Consensus 15 ~nGpaYiA~~G~VYD 29 (81)
T COG4892 15 ENGPAYIAVNGTVYD 29 (81)
T ss_pred CCCCeEEEECCEEEe
Confidence 456788999999997
No 57
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=53.35 E-value=15 Score=17.93 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.5
Q ss_pred CCcEEEEEceeEcC
Q 037758 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~l~~nGeI~N 80 (105)
...+.|.|+|++|-
T Consensus 12 ~~ev~I~H~g~~Y~ 25 (38)
T PF10636_consen 12 GREVRIEHGGQIYR 25 (38)
T ss_dssp TSEEEEEETTEEEE
T ss_pred CCEEEEEeCCeEEE
Confidence 45689999999985
No 58
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=53.34 E-value=10 Score=20.39 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=14.5
Q ss_pred CeecCCCcEEEEEceeEcC
Q 037758 62 PLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 62 P~~~~~~~~~l~~nGeI~N 80 (105)
-+...++.++|-|||.+|-
T Consensus 32 ~Lfgg~~~i~I~H~Ga~Y~ 50 (63)
T COG4256 32 TLFGGDGKIIIDHDGAEYL 50 (63)
T ss_pred hcccCCCeEEEecCCceEE
Confidence 3334567899999999986
No 59
>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=51.17 E-value=6.3 Score=24.84 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.1
Q ss_pred CcEEEEEceeEcChHHHHHHhcC
Q 037758 68 KTVVVTVNGEIYNHKQLREQLKN 90 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~~~l~g 90 (105)
|..+=+|||.-||..|++-|..|
T Consensus 98 Gs~VGVyNGK~FnqvEiKPEMIG 120 (152)
T KOG0898|consen 98 GSMVGVYNGKTFNQVEIKPEMIG 120 (152)
T ss_pred cceEEEecCcccceeeccHHHHh
Confidence 56888999999999999988764
No 60
>PRK10183 hypothetical protein; Provisional
Probab=48.39 E-value=16 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=11.8
Q ss_pred CCcEEEEEceeEcC
Q 037758 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~l~~nGeI~N 80 (105)
.+.+.|.|||+.|-
T Consensus 30 ~~~v~I~H~G~~Y~ 43 (56)
T PRK10183 30 DGKVIIDHDGQEYL 43 (56)
T ss_pred CCEEEEEECCcEEE
Confidence 45689999999985
No 61
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=42.72 E-value=11 Score=24.08 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=16.2
Q ss_pred cEEEEEceeEcChHHHHHHh
Q 037758 69 TVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 69 ~~~l~~nGeI~N~~~L~~~l 88 (105)
++-+++|||-||.+.+-.++
T Consensus 95 DLRVCYNGEWy~tr~vs~~a 114 (155)
T PF10777_consen 95 DLRVCYNGEWYNTRFVSDQA 114 (155)
T ss_pred EEeEEEcceeeeeccCCHHH
Confidence 46799999999988776655
No 62
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.84 E-value=56 Score=20.48 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=20.8
Q ss_pred eeeeeCCCCCCCCeecC---CCcEEEEEceeEcC
Q 037758 50 RLAIVDPTSGDQPLYNE---DKTVVVTVNGEIYN 80 (105)
Q Consensus 50 rl~~~~~~~~~QP~~~~---~~~~~l~~nGeI~N 80 (105)
-.+..+..+..|||.+. ++=+++|-|+++..
T Consensus 57 afW~rde~g~n~Pfs~~~~a~~LlI~V~de~~~G 90 (145)
T COG4815 57 AFWQRDEGGQNQPFSDDGMAAGLLIFVIDEVLRG 90 (145)
T ss_pred EEEEeCCCCCcCCCCcccccCeeEEEEEccccce
Confidence 34566666788999652 33468888887654
No 63
>PHA02104 hypothetical protein
Probab=41.47 E-value=9.6 Score=21.30 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=9.9
Q ss_pred EEEEEceeEcCh
Q 037758 70 VVVTVNGEIYNH 81 (105)
Q Consensus 70 ~~l~~nGeI~N~ 81 (105)
-.+++||.|||.
T Consensus 52 ~yfa~~gkiyna 63 (89)
T PHA02104 52 TYFAQNGKIYNA 63 (89)
T ss_pred eeehhCCeEEee
Confidence 468999999984
No 64
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=38.14 E-value=3.1 Score=25.31 Aligned_cols=8 Identities=63% Similarity=1.327 Sum_probs=6.4
Q ss_pred CeEEEEEE
Q 037758 1 MCGILAVF 8 (105)
Q Consensus 1 McGI~g~~ 8 (105)
||||.|-+
T Consensus 83 MCgILgTi 90 (130)
T PF02960_consen 83 MCGILGTI 90 (130)
T ss_pred HHHHHHHH
Confidence 88988865
No 65
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=37.25 E-value=28 Score=23.27 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=10.3
Q ss_pred EEEEceeEcChHHHHHHh
Q 037758 71 VVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 71 ~l~~nGeI~N~~~L~~~l 88 (105)
-|+|.|+--+++.|.++|
T Consensus 21 ~I~F~G~~~~re~LEeeL 38 (194)
T PF09894_consen 21 NIAFRGDEEKREKLEEEL 38 (194)
T ss_pred eeeecCCHHHHHHHHHHH
Confidence 355566655555555555
No 66
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=37.18 E-value=24 Score=18.95 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=14.8
Q ss_pred CCcEEEEEceeEcChHHHH
Q 037758 67 DKTVVVTVNGEIYNHKQLR 85 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~~~L~ 85 (105)
.++.+++.+|.+|+-....
T Consensus 13 ~~~~~v~i~g~VYDvt~~~ 31 (76)
T PF00173_consen 13 KGDCWVIIDGKVYDVTDFL 31 (76)
T ss_dssp TTEEEEEETTEEEECTTTT
T ss_pred CCCEEEEECCEEccccccc
Confidence 4678899999999966643
No 67
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=34.68 E-value=18 Score=20.14 Aligned_cols=29 Identities=24% Similarity=0.443 Sum_probs=19.4
Q ss_pred CCcEEEEEceeEcChHHHHHHhc---CCCccc
Q 037758 67 DKTVVVTVNGEIYNHKQLREQLK---NHQFRT 95 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~~~L~~~l~---g~~~~~ 95 (105)
.+.+++.+||+|.=..-|.+.|. |+.+++
T Consensus 37 ~D~y~i~~~geIvL~eNl~~YLie~lg~e~k~ 68 (71)
T PF09466_consen 37 GDDYFISPDGEIVLEENLKRYLIEQLGFEFKT 68 (71)
T ss_dssp TS-EEE-ETTEEEECCCHHHHHHHTTTEEEE-
T ss_pred CCeEEEeCCCcEEehhhHHHHHHHHcCeEEee
Confidence 44577779999987777888886 555543
No 68
>PRK06764 hypothetical protein; Provisional
Probab=33.56 E-value=46 Score=19.33 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.8
Q ss_pred CCCcEEEEEceeEcCh
Q 037758 66 EDKTVVVTVNGEIYNH 81 (105)
Q Consensus 66 ~~~~~~l~~nGeI~N~ 81 (105)
+.+.+++--||-|||.
T Consensus 82 kpg~yvirvngciy~d 97 (105)
T PRK06764 82 KPGKYVIRVNGCIYND 97 (105)
T ss_pred CCccEEEEEccEEeee
Confidence 4678999999999994
No 69
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=31.45 E-value=69 Score=20.66 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGP 33 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~ 33 (105)
|--|+|++++.+. -+-..++++...|..||.
T Consensus 1 m~~Il~ivG~k~S--GKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 1 MMKILGIVGYKNS--GKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CCcEEEEEecCCC--ChhhHHHHHHHHHHhCCc
Confidence 4557888887642 133568888899999985
No 70
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=28.21 E-value=44 Score=22.12 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=16.8
Q ss_pred CCcEEEEEceeEcChHHHHHHh
Q 037758 67 DKTVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~~~L~~~l 88 (105)
+.++.++.||.||+...=|+-.
T Consensus 72 d~~Il~AI~G~VYDVT~Gr~FY 93 (183)
T KOG1110|consen 72 DKPILLAINGKVYDVTRGREFY 93 (183)
T ss_pred CCceEEEecceEEEecCCcccc
Confidence 5678999999999866544444
No 71
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=27.39 E-value=52 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=15.6
Q ss_pred CCcEEEEEceeEcChHHHHHH
Q 037758 67 DKTVVVTVNGEIYNHKQLREQ 87 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~~~L~~~ 87 (105)
.++.+|+.+|.+||-.....+
T Consensus 18 ~~d~Wvii~gkVYDvT~Fl~e 38 (124)
T KOG0537|consen 18 KDDCWVIIHGKVYDVTSFLDE 38 (124)
T ss_pred CCCeEEEECCEEEeccchhhh
Confidence 456889999999996655543
No 72
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=27.01 E-value=46 Score=15.74 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.3
Q ss_pred EEEEceeEcC
Q 037758 71 VVTVNGEIYN 80 (105)
Q Consensus 71 ~l~~nGeI~N 80 (105)
.+.|||.+|-
T Consensus 15 ~V~~~g~~y~ 24 (41)
T PF02839_consen 15 RVSYNGKLYQ 24 (41)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCCEEE
Confidence 5789999985
No 73
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=25.51 E-value=24 Score=22.65 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=21.1
Q ss_pred CcEEEEEceeEcC--hHHHHHHhc-CCCcccCChhhhhcc
Q 037758 68 KTVVVTVNGEIYN--HKQLREQLK-NHQFRTGSDCEVIAH 104 (105)
Q Consensus 68 ~~~~l~~nGeI~N--~~~L~~~l~-g~~~~~~sD~evil~ 104 (105)
.=||+=|+|.|.- -..||+|.. =...-+..| ||++.
T Consensus 99 r~~VldF~Gdi~A~~v~~LReeisail~~a~~~D-eV~~r 137 (155)
T PF08496_consen 99 RLFVLDFKGDIKASEVESLREEISAILSVATPED-EVLVR 137 (155)
T ss_pred eEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCC-eEEEE
Confidence 3479999999985 345666653 112223334 66654
No 74
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=24.22 E-value=94 Score=16.46 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCcEEEEEceeEcChHHHHHHh
Q 037758 67 DKTVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~~~L~~~l 88 (105)
...++++.|++|..+.+....|
T Consensus 29 ~~~vav~~N~~iv~r~~~~~~L 50 (65)
T PRK05863 29 EKGIAVAVDWSVLPRSDWATKL 50 (65)
T ss_pred CCcEEEEECCcCcChhHhhhhc
Confidence 3568999999998877776544
No 75
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.72 E-value=1e+02 Score=21.15 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=23.2
Q ss_pred CeecCCCcEEE-EEceeEcChHHHHHHhc
Q 037758 62 PLYNEDKTVVV-TVNGEIYNHKQLREQLK 89 (105)
Q Consensus 62 P~~~~~~~~~l-~~nGeI~N~~~L~~~l~ 89 (105)
|+...++++++ ++.+.|.|..+|.++|.
T Consensus 167 pviTDnGN~IlDv~~~~i~dp~~le~~l~ 195 (227)
T COG0120 167 PVITDNGNYILDVHFGRIEDPEELEKELN 195 (227)
T ss_pred CEEeeCCCEEEEecCCCcCCHHHHHHHHh
Confidence 88776777655 58889999999999996
No 76
>PF01589 Alpha_E1_glycop: Alphavirus E1 glycoprotein; InterPro: IPR002548 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 (IPR000936 from INTERPRO) and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3, glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike []. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together. The alphaviral glycoprotein E1 is a class II viral fusion protein, which is structurally different from the class I fusion proteins found in influenza virus and HIV. The structure of the Semliki Forest virus revealed a structure that is similar to that of flaviviral glycoprotein E, with three structural domains in the same primary sequence arrangement []. This entry represents all three domains of the alphaviral E1 glycoprotein.; GO: 0004252 serine-type endopeptidase activity, 0019028 viral capsid, 0055036 virion membrane; PDB: 2YEW_L 1LD4_P 1Z8Y_K 3MUU_B 3N44_F 2XFB_F 3N42_F 2XFC_H 3N40_F 3N41_F ....
Probab=23.56 E-value=54 Score=24.92 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=11.3
Q ss_pred CcEEEEEceeEcChHH
Q 037758 68 KTVVVTVNGEIYNHKQ 83 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~ 83 (105)
++-++++-||+||+.-
T Consensus 238 D~KiVvy~~eVYNyDf 253 (502)
T PF01589_consen 238 DNKIVVYKGEVYNYDF 253 (502)
T ss_dssp SSEEEEESSEEEE---
T ss_pred CceEEEEcceeecccc
Confidence 4568999999999754
No 77
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=22.71 E-value=27 Score=24.75 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=12.9
Q ss_pred EEEEceeEcChHHHHH
Q 037758 71 VVTVNGEIYNHKQLRE 86 (105)
Q Consensus 71 ~l~~nGeI~N~~~L~~ 86 (105)
.+++||-+||++.-|+
T Consensus 204 mfAcNGILFNHESPRR 219 (376)
T KOG1372|consen 204 MFACNGILFNHESPRR 219 (376)
T ss_pred ceeeccEeecCCCCcc
Confidence 5789999999877654
No 78
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.66 E-value=84 Score=17.49 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=17.0
Q ss_pred hHHHHHHhc--CCCcccCChhhhh
Q 037758 81 HKQLREQLK--NHQFRTGSDCEVI 102 (105)
Q Consensus 81 ~~~L~~~l~--g~~~~~~sD~evi 102 (105)
..++.+.|. |+++.-.+|.|+.
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~~~~~ 78 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSDDELA 78 (85)
T ss_pred HHHHHHHHHHCCCCeEECCCCHHH
Confidence 667777776 8988878888765
No 79
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=22.53 E-value=71 Score=16.56 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=11.6
Q ss_pred CCe-ecCCCcEEEEEceeEcCh
Q 037758 61 QPL-YNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 61 QP~-~~~~~~~~l~~nGeI~N~ 81 (105)
+.+ .+++++++|. |+||+-
T Consensus 34 ~i~Y~~~dg~yli~--G~l~d~ 53 (57)
T PF10411_consen 34 GILYVDEDGRYLIQ--GQLYDL 53 (57)
T ss_dssp EEEEEETTSSEEEE--S-EEE-
T ss_pred eEEEEcCCCCEEEE--eEEEec
Confidence 344 4577887666 999864
No 80
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=68 Score=20.58 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.0
Q ss_pred CCCcEEEEEceeEcChHHHHHHhc
Q 037758 66 EDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 66 ~~~~~~l~~nGeI~N~~~L~~~l~ 89 (105)
..+-.++--+|++|+...+...|.
T Consensus 83 ~kg~~v~~prGr~y~~~nI~~~L~ 106 (150)
T COG1671 83 DKGAAVLNPRGRLYTEENIGERLA 106 (150)
T ss_pred hcCCEEECCCCcccCHhHHHHHHH
Confidence 356789999999999999888773
No 81
>PRK00124 hypothetical protein; Validated
Probab=21.49 E-value=70 Score=20.48 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=19.4
Q ss_pred CCCcEEEEEceeEcChHHHHHHh
Q 037758 66 EDKTVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 66 ~~~~~~l~~nGeI~N~~~L~~~l 88 (105)
..+-.+|-.+|++|+...+...|
T Consensus 84 ~Kga~vl~prG~~yt~~nI~~~L 106 (151)
T PRK00124 84 EKGAIVLNPRGYIYTNDNIDQLL 106 (151)
T ss_pred HCCCEEECCCCcCCCHHHHHHHH
Confidence 35678999999999988888777
No 82
>PRK07440 hypothetical protein; Provisional
Probab=21.01 E-value=1.3e+02 Score=16.29 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=13.6
Q ss_pred CCcEEEEEceeEcChHH
Q 037758 67 DKTVVVTVNGEIYNHKQ 83 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~~~ 83 (105)
...++++.||+|....+
T Consensus 33 ~~~vav~~N~~iv~r~~ 49 (70)
T PRK07440 33 PRLVAVEYNGEILHRQF 49 (70)
T ss_pred CCeEEEEECCEEeCHHH
Confidence 35689999999988554
Done!