Query 037758
Match_columns 105
No_of_seqs 109 out of 1281
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 7.1E-30 2.4E-34 188.5 10.6 104 2-105 1-105 (553)
2 1xff_A D-fructose-6-, glucosam 100.0 2.2E-29 7.4E-34 169.5 9.6 98 2-105 1-130 (240)
3 1ao0_A Glutamine phosphoribosy 99.9 1.4E-27 4.6E-32 173.2 9.7 100 2-105 1-134 (459)
4 2bpl_A Glucosamine--fructose-6 99.9 3.7E-27 1.3E-31 175.6 8.8 98 2-105 1-130 (608)
5 1ecf_A Glutamine phosphoribosy 99.9 9.6E-27 3.3E-31 170.3 10.2 100 2-105 1-134 (504)
6 1te5_A Conserved hypothetical 99.8 7.4E-23 2.5E-27 139.0 -3.2 96 1-105 1-135 (257)
7 3mdn_A Glutamine aminotransfer 99.8 7.3E-21 2.5E-25 130.2 2.9 103 1-105 3-151 (274)
8 1jgt_A Beta-lactam synthetase; 99.4 1.4E-13 5E-18 100.9 2.4 45 60-105 57-105 (513)
9 1q15_A CARA; CMPR, (2S,5S)-5-c 99.3 8.1E-13 2.8E-17 96.8 3.4 60 42-105 26-88 (503)
10 1ea0_A Glutamate synthase [NAD 98.8 4E-09 1.4E-13 84.5 3.8 80 18-103 145-278 (1479)
11 1ofd_A Ferredoxin-dependent gl 98.7 9.5E-09 3.3E-13 82.5 5.5 80 18-103 145-275 (1520)
12 1ofd_A Ferredoxin-dependent gl 77.0 3.2 0.00011 34.5 4.6 31 2-32 1-32 (1520)
13 1ea0_A Glutamate synthase [NAD 70.8 5.1 0.00018 33.3 4.4 32 2-33 1-33 (1479)
14 2loj_A Putative cytoplasmic pr 51.7 9.5 0.00032 20.0 1.9 14 67-80 37-50 (63)
15 2jra_A Protein RPA2121; domain 45.9 12 0.0004 19.9 1.7 14 67-80 41-54 (67)
16 1abz_A Alpha-T-alpha, ATA; de 45.6 15 0.00051 16.7 1.8 18 19-36 6-23 (40)
17 3noh_A Putative peptide bindin 39.0 20 0.00069 21.4 2.2 35 67-101 20-60 (139)
18 2pjm_A Ribose-5-phosphate isom 31.7 48 0.0017 21.6 3.3 31 59-89 166-196 (226)
19 4gmk_A Ribose-5-phosphate isom 31.0 33 0.0011 22.6 2.4 30 60-89 166-196 (228)
20 2ibj_A Cytochrome B5, CYTB5; F 26.7 29 0.00098 18.9 1.4 17 68-84 21-37 (88)
21 1cyo_A Cytochrome B5; electron 25.9 30 0.001 19.1 1.4 17 68-84 19-35 (93)
22 1x3x_A Cytochrome B5; hemoprot 25.7 31 0.0011 18.5 1.4 19 68-86 18-36 (82)
23 2dsm_A Hypothetical protein YQ 25.2 55 0.0019 17.5 2.2 27 69-95 33-62 (72)
24 1cxy_A Cytochrome B5; helix, b 25.1 32 0.0011 18.9 1.4 19 68-86 22-40 (90)
25 3ixq_A Ribose-5-phosphate isom 25.0 79 0.0027 20.7 3.4 31 59-89 166-196 (226)
26 3ner_A Cytochrome B5 type B; h 24.7 33 0.0011 19.0 1.4 17 68-84 24-40 (92)
27 3lf5_A Cytochrome B5 reductase 24.4 34 0.0012 18.8 1.4 18 68-85 20-37 (88)
28 3j0f_E E1 envelope glycoprotei 22.8 34 0.0012 24.4 1.4 16 68-83 174-189 (439)
29 1hko_A Cytochrome B5; electron 22.7 32 0.0011 19.5 1.1 17 68-84 23-39 (104)
30 1i9w_A Fusion protein E1; enve 22.3 35 0.0012 24.0 1.3 15 68-82 174-188 (390)
31 3id1_A Regulator of sigma E pr 21.6 95 0.0033 16.7 3.0 23 67-89 22-45 (95)
32 3j0c_A E1 envelope glycoprotei 21.4 46 0.0016 23.8 1.8 15 68-82 174-188 (442)
33 1ywm_A C protein alpha-antigen 21.0 1.5E+02 0.0051 18.7 3.9 31 59-89 100-131 (200)
34 3n40_F E1 envelope glycoprotei 20.3 41 0.0014 23.6 1.4 15 68-82 176-190 (393)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=99.96 E-value=7.1e-30 Score=188.54 Aligned_cols=104 Identities=53% Similarity=0.884 Sum_probs=92.0
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcCh
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~ 81 (105)
|||+|+++.+.........+.+|+.+|+|||||++|+|..++++|||+||++.|.+.+.||+.+.+++++|+|||||||+
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~ 80 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECH
Confidence 99999998653212235678899999999999999999999999999999999987789999887788999999999999
Q ss_pred HHHHHHhc-CCCcccCChhhhhccC
Q 037758 82 KQLREQLK-NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 82 ~~L~~~l~-g~~~~~~sD~evil~~ 105 (105)
.+|+++|. .+.|++.||+|||+++
T Consensus 81 ~eLr~~L~~~~~f~s~sDtEvil~l 105 (553)
T 1ct9_A 81 QALRAEYGDRYQFQTGSDCEVILAL 105 (553)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHH
T ss_pred HHHHHHHhccCccCCCCcHHHHHHH
Confidence 99999997 5789999999999864
No 2
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.96 E-value=2.2e-29 Score=169.53 Aligned_cols=98 Identities=40% Similarity=0.547 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCce-Ee---------------------------CCceEeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLH-YH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~-~~---------------------------~~~~l~~~rl~~ 53 (105)
|||+|+++.++. ...+..|+.+|+|||||++|++ .. +++++||+|+++
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at 76 (240)
T 1xff_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (240)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CcEEEEEcCcch----HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccC
Confidence 999999986532 3678899999999999999999 63 457899999999
Q ss_pred eCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.. ++++++|||+|||+.+|+++|. |+.|++.||+|+++++
T Consensus 77 ~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l 130 (240)
T 1xff_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHL 130 (240)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHH
T ss_pred CCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 9863 68899987 6899999999999999999997 8999999999999863
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.95 E-value=1.4e-27 Score=173.18 Aligned_cols=100 Identities=31% Similarity=0.508 Sum_probs=83.9
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~~ 54 (105)
|||+|+++..+ ....+..|+.+|+|||||++|++.. +++++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~ 76 (459)
T 1ao0_A 1 CGVFGIWGHEE----APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (459)
T ss_dssp CEEEEEESCTB----HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC-
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCC
Confidence 99999998642 2456779999999999999999986 3578999999999
Q ss_pred CCC--CCCCCeec---CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYN---EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~---~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.. .+.|||.. ..++++++|||+|||+.+|+++|. |+.|++.||+|+|+++
T Consensus 77 g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l 134 (459)
T 1ao0_A 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHL 134 (459)
T ss_dssp ---CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHH
T ss_pred CCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 975 58899976 557899999999999999999997 8999999999999864
No 4
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.94 E-value=3.7e-27 Score=175.57 Aligned_cols=98 Identities=40% Similarity=0.540 Sum_probs=86.6
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe----------------------------CCceEeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH----------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~----------------------------~~~~l~~~rl~~ 53 (105)
|||+|+++.++ ....+..|+.+|+|||||++|++.. +++++||+||++
T Consensus 1 CGI~G~~~~~~----~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at 76 (608)
T 2bpl_A 1 CGIVGAIAQRD----VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (608)
T ss_dssp CEEEEEECSSC----CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCC
T ss_pred CeEEEEEcCCc----hHHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCC
Confidence 99999998653 2367889999999999999999976 346899999999
Q ss_pred eCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.+ ++++++|||+|||+.+||++|. |+.|+++||+|+|+++
T Consensus 77 ~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l 130 (608)
T 2bpl_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHL 130 (608)
T ss_dssp SSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHH
T ss_pred CCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 9963 68899987 7899999999999999999997 9999999999999864
No 5
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.94 E-value=9.6e-27 Score=170.33 Aligned_cols=100 Identities=27% Similarity=0.484 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------CceEeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------DCYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------~~~l~~~rl~~ 53 (105)
|||+|+++..+. ...+..|+.+|+|||||++|+++.+ ++++||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT 76 (504)
T 1ecf_A 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (504)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhH----HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCc
Confidence 999999986432 3568899999999999999999864 46899999999
Q ss_pred eCCC--CCCCCeecC-CCcEEEEEceeEcChHHHHHHhc---CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNE-DKTVVVTVNGEIYNHKQLREQLK---NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~-~~~~~l~~nGeI~N~~~L~~~l~---g~~~~~~sD~evil~~ 105 (105)
.|.. .+.|||... +++++++|||+|||+.+|+++|. ++.|++.||+|+|+++
T Consensus 77 ~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l 134 (504)
T 1ecf_A 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNI 134 (504)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHH
T ss_pred CCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHH
Confidence 9975 689999753 35699999999999999999997 3789999999999863
No 6
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.83 E-value=7.4e-23 Score=138.98 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=75.6
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccC------CCCCCceEeCC-----------------------------ce
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRG------PDWSGLHYHGD-----------------------------CY 45 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG------~d~~g~~~~~~-----------------------------~~ 45 (105)
||||+|+++..+ . . +.-.+.+|+||| +|++|+++.++ ++
T Consensus 1 MCgi~G~~~~~~-~----~-~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~ 74 (257)
T 1te5_A 1 MCELLGMSANVP-T----D-IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETV 74 (257)
T ss_dssp -CCEEEEEEEEE-E----E-CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEE
T ss_pred CCeEEEEEcCCC-c----c-HHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEE
Confidence 999999997532 1 1 222678999999 79999987531 46
Q ss_pred EeeeeeeeeCCC--CCCCCeecC--CCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhccC
Q 037758 46 LAHQRLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 46 l~~~rl~~~~~~--~~~QP~~~~--~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+||+|++|.|.. .+.|||... .++++++|||.|.|+.+ |.+ ++.|++.||+|+|+++
T Consensus 75 IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~--~~~~~s~TDSEvi~~l 135 (257)
T 1te5_A 75 IGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG--FYRPVGETDSEAAFCD 135 (257)
T ss_dssp EEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC--SSCCSSCCHHHHHHHH
T ss_pred EEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc--cCCcccCCHHHHHHHH
Confidence 899999999965 578999753 46799999999999999 655 3569999999999764
No 7
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.81 E-value=7.3e-21 Score=130.18 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=58.8
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhcccc--------CCCCCCceEeCC-----------------------------
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHR--------GPDWSGLHYHGD----------------------------- 43 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~R--------G~d~~g~~~~~~----------------------------- 43 (105)
||+++|+.+...............+..+.++ .+|++|+++.++
T Consensus 3 MCR~~~y~g~~~~l~~ll~~p~~sL~~qs~~~~~~~~~~~~Dg~GIa~~~~~~~~~~~r~~~p~~~~~~l~~l~~~~~g~ 82 (274)
T 3mdn_A 3 LCRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDVYPAWSDPNLRAVAHHVRSG 82 (274)
T ss_dssp -CCEEEEEEEEEEGGGTC------------------------CEEEEEESSSSSCEEEEESSCGGGCHHHHHHHHHCEEE
T ss_pred ccceeeecCCCccHHHHHhCccccHHHHhhhhhhcCCCCCCCeeEEEEEcCCCcEEEEecCCcccCcHHHHHHhhcCCCC
Confidence 9999999984211110001111222233444 889999977442
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--C--CCc---ccCChhhhhccC
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--N--HQF---RTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g--~~~---~~~sD~evil~~ 105 (105)
++|||+|+++.+.. .+.|||.. ++++++|||+|+|+.+||++|. | +.| .+.||+|+|+++
T Consensus 83 ~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l 151 (274)
T 3mdn_A 83 LFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLL 151 (274)
T ss_dssp EEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHH
T ss_pred EEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHH
Confidence 36899999999864 68899986 6799999999999999999997 5 344 789999999863
No 8
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.36 E-value=1.4e-13 Score=100.95 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCeecC----CCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhccC
Q 037758 60 DQPLYNE----DKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 60 ~QP~~~~----~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
.||+... .++++++|||||||+.+|+++|. +.|+|.||+|||+++
T Consensus 57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~-~~f~t~sDtEvil~l 105 (513)
T 1jgt_A 57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP-AGPAPEGDAELVLRL 105 (513)
T ss_dssp CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC-SSCCCSSHHHHHHHH
T ss_pred CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC-CCCCCCCHHHHHHHH
Confidence 5888653 36899999999999999999995 889999999999863
No 9
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.31 E-value=8.1e-13 Score=96.79 Aligned_cols=60 Identities=23% Similarity=0.204 Sum_probs=52.8
Q ss_pred CCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcChH---HHHHHhcCCCcccCChhhhhccC
Q 037758 42 GDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHK---QLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 42 ~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~~---~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+++++||+||++.+. .+.||+.+.++.++++ |+|||+. +|+++|.| .|.+.||+|||+++
T Consensus 26 ~~~~igh~R~~t~~~-~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g-~f~s~sDtEvil~l 88 (503)
T 1q15_A 26 KGEALSNGYLFIEQN-GHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEG-EAYLANDAELLALL 88 (503)
T ss_dssp EEEEETTEEEEEETT-CCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCG-GGGGCCHHHHHHHH
T ss_pred CceeEeeeeEEEcCC-CCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhC-CCCCCChHHHHHHH
Confidence 468899999999854 6889998877778777 9999999 99999987 89999999999863
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=98.76 E-value=4e-09 Score=84.51 Aligned_cols=80 Identities=19% Similarity=0.057 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccccCCC----CCCceEeCC-----------------------------ceEeeeeeeeeCCC--CCCCC
Q 037758 18 RSRIIELSRRLRHRGPD----WSGLHYHGD-----------------------------CYLAHQRLAIVDPT--SGDQP 62 (105)
Q Consensus 18 ~~~~~~ml~~l~~RG~d----~~g~~~~~~-----------------------------~~l~~~rl~~~~~~--~~~QP 62 (105)
...+.-...+++||+++ +.+++..+. ++++|+|++|.+.. ...||
T Consensus 145 ~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~AQP 224 (1479)
T 1ea0_A 145 ELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQP 224 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTSSC
T ss_pred HHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccCCc
Confidence 35577778899999964 455555432 57999999998865 57899
Q ss_pred eecCCCcEEEEEceeEcChHHHHHHhc------------------C-CCcccCChhhhhc
Q 037758 63 LYNEDKTVVVTVNGEIYNHKQLREQLK------------------N-HQFRTGSDCEVIA 103 (105)
Q Consensus 63 ~~~~~~~~~l~~nGeI~N~~~L~~~l~------------------g-~~~~~~sD~evil 103 (105)
|.. |+|||||.|...+|+++. + .-|++.||+|++.
T Consensus 225 f~~------laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld 278 (1479)
T 1ea0_A 225 FRM------LAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLD 278 (1479)
T ss_dssp CSS------EEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHH
T ss_pred cEE------EEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHH
Confidence 943 899999999999997752 1 2378999999983
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=98.75 E-value=9.5e-09 Score=82.54 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=62.2
Q ss_pred HHHHHHHHhhccccCCCCCCceEeCC-----------------------------ceEeeeeeeeeCCC--CCCCCeecC
Q 037758 18 RSRIIELSRRLRHRGPDWSGLHYHGD-----------------------------CYLAHQRLAIVDPT--SGDQPLYNE 66 (105)
Q Consensus 18 ~~~~~~ml~~l~~RG~d~~g~~~~~~-----------------------------~~l~~~rl~~~~~~--~~~QP~~~~ 66 (105)
...+.-...+++||++++.+++..+. ++++|+|++|.+.. ...|||..
T Consensus 145 ~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~~- 223 (1520)
T 1ofd_A 145 DRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRL- 223 (1520)
T ss_dssp HHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCSS-
T ss_pred HHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchhe-
Confidence 35677788899999987777766542 57999999998865 57899943
Q ss_pred CCcEEEEEceeEcChHHHH------HH-----------hc--C-CCcccCChhhhhc
Q 037758 67 DKTVVVTVNGEIYNHKQLR------EQ-----------LK--N-HQFRTGSDCEVIA 103 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~~~L~------~~-----------l~--g-~~~~~~sD~evil 103 (105)
|+|||||.|...+| ++ |+ + .-|++.||+|++.
T Consensus 224 -----LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld 275 (1520)
T 1ofd_A 224 -----LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLD 275 (1520)
T ss_dssp -----EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHH
T ss_pred -----eEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHH
Confidence 89999998888888 32 22 3 3478999999985
No 12
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=77.02 E-value=3.2 Score=34.52 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCc-hhHHHHHHHHHhhccccC
Q 037758 2 CGILAVFGCIDNS-QAKRSRIIELSRRLRHRG 32 (105)
Q Consensus 2 cGI~g~~~~~~~~-~~~~~~~~~ml~~l~~RG 32 (105)
|||..+.+.+... ....+...++|..|.|||
T Consensus 1 CGvg~va~~~G~~sh~iv~~al~~L~~m~HRG 32 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRG 32 (1520)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGS
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccC
Confidence 9999988865533 234566778889999999
No 13
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=70.78 E-value=5.1 Score=33.30 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCCc-hhHHHHHHHHHhhccccCC
Q 037758 2 CGILAVFGCIDNS-QAKRSRIIELSRRLRHRGP 33 (105)
Q Consensus 2 cGI~g~~~~~~~~-~~~~~~~~~ml~~l~~RG~ 33 (105)
|||..+.+.+... ....+...+++..|.|||-
T Consensus 1 CGvg~va~~~G~~sh~~v~~al~aL~~m~HRG~ 33 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGA 33 (1479)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSC
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCc
Confidence 9999888865533 3344567788889999996
No 14
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=51.68 E-value=9.5 Score=19.99 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=11.9
Q ss_pred CCcEEEEEceeEcC
Q 037758 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~l~~nGeI~N 80 (105)
.+.+.|.|+|++|-
T Consensus 37 ~~~v~I~H~G~~Y~ 50 (63)
T 2loj_A 37 DGKVIIDHNGQEYL 50 (63)
T ss_dssp TCEEEEEETTEEEE
T ss_pred CCEEEEEeCCeEEE
Confidence 45689999999995
No 15
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=45.89 E-value=12 Score=19.88 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=11.9
Q ss_pred CCcEEEEEceeEcC
Q 037758 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~l~~nGeI~N 80 (105)
.+.+.|.|+|++|-
T Consensus 41 ~~ev~I~H~G~~Y~ 54 (67)
T 2jra_A 41 DREIVIAHGDDRYR 54 (67)
T ss_dssp SSEEEEEETTEEEE
T ss_pred CCEEEEEeCCeEEE
Confidence 45689999999995
No 16
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=45.59 E-value=15 Score=16.71 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=13.6
Q ss_pred HHHHHHHhhccccCCCCC
Q 037758 19 SRIIELSRRLRHRGPDWS 36 (105)
Q Consensus 19 ~~~~~ml~~l~~RG~d~~ 36 (105)
..+..-+++|..||.|+-
T Consensus 6 arveqelqaleargtdsn 23 (40)
T 1abz_A 6 ARVEQELQALEARGTDSN 23 (40)
T ss_dssp HHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 345566789999999874
No 17
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=38.99 E-value=20 Score=21.39 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=24.8
Q ss_pred CCcEEEEEceeEcCh--HHHHHHhc----CCCcccCChhhh
Q 037758 67 DKTVVVTVNGEIYNH--KQLREQLK----NHQFRTGSDCEV 101 (105)
Q Consensus 67 ~~~~~l~~nGeI~N~--~~L~~~l~----g~~~~~~sD~ev 101 (105)
+|.++++.|=.+.-. .++|++|. |..-...+|+|+
T Consensus 20 eG~Yl~~iNp~ld~~~~~~~R~~Lka~~~g~t~~~~tdtel 60 (139)
T 3noh_A 20 EGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIRTDTEL 60 (139)
T ss_dssp CSEEEEEECTTSGGGCCHHHHHHHHHHHTTSCSCCCCSSCC
T ss_pred ccceEEEeccccCccccHHHHHHHHHHhcCchhhcccccce
Confidence 477899999888766 88888886 543334456665
No 18
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=31.68 E-value=48 Score=21.62 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCCCeecCCCcEEEEEceeEcChHHHHHHhc
Q 037758 59 GDQPLYNEDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 59 ~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~ 89 (105)
...|++..++++++=+.+.|.|..+|.++|.
T Consensus 166 ~~gp~vTDnGn~IlD~~~~i~~p~~l~~~l~ 196 (226)
T 2pjm_A 166 KRGPVITDNGNMIIDVFMNIDDAIELEKEIN 196 (226)
T ss_dssp SSSBCBCTTSCEEEEEECCCSCHHHHHHHHH
T ss_pred CCCcEEcCCCCEEEEeCCCCCCHHHHHHHhc
Confidence 4579988888887766678999999999996
No 19
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=30.98 E-value=33 Score=22.56 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCCeecCCCcEEE-EEceeEcChHHHHHHhc
Q 037758 60 DQPLYNEDKTVVV-TVNGEIYNHKQLREQLK 89 (105)
Q Consensus 60 ~QP~~~~~~~~~l-~~nGeI~N~~~L~~~l~ 89 (105)
..|+...++++++ ++.++|.|..+|.++|.
T Consensus 166 g~~~vTDnGN~IlD~~~~~i~dp~~l~~~L~ 196 (228)
T 4gmk_A 166 GSLLHTDSDNYIIDLHLGKIENPKELGDYLI 196 (228)
T ss_dssp SSBCCCTTSCEEEEECCSCCSCHHHHHHHHH
T ss_pred CCeEEecCCCEEEEecCCCCCCHHHHHHHHh
Confidence 3578666677655 67789999999999995
No 20
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=26.69 E-value=29 Score=18.90 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=13.8
Q ss_pred CcEEEEEceeEcChHHH
Q 037758 68 KTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L 84 (105)
++.+++.+|.+|+-...
T Consensus 21 ~~~wv~i~g~VYDvT~f 37 (88)
T 2ibj_A 21 DKNWFIIHNNVYDVTAF 37 (88)
T ss_dssp TEEEEEETTEEEECGGG
T ss_pred CCEEEEECCEEEECCcc
Confidence 56889999999996654
No 21
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=25.90 E-value=30 Score=19.13 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=13.4
Q ss_pred CcEEEEEceeEcChHHH
Q 037758 68 KTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L 84 (105)
++.+++.+|.+||-...
T Consensus 19 ~~~wv~i~g~VYDvT~f 35 (93)
T 1cyo_A 19 KSTWLILHYKVYDLTKF 35 (93)
T ss_dssp TEEEEEETTEEEECTTT
T ss_pred CCEEEEECCEEEECCCc
Confidence 46889999999985543
No 22
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=25.74 E-value=31 Score=18.52 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=14.6
Q ss_pred CcEEEEEceeEcChHHHHH
Q 037758 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~~ 86 (105)
++.+++.+|.+|+-.....
T Consensus 18 ~~~wv~i~g~VYDvT~f~~ 36 (82)
T 1x3x_A 18 NDLWIIYDGEVHDMTSFYK 36 (82)
T ss_dssp TEEEEEETTEEEECGGGGG
T ss_pred CCEEEEECCEEEECCcchh
Confidence 4578999999999766543
No 23
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=25.17 E-value=55 Score=17.51 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred cEEEEEceeEcChHHHHHHhc---CCCccc
Q 037758 69 TVVVTVNGEIYNHKQLREQLK---NHQFRT 95 (105)
Q Consensus 69 ~~~l~~nGeI~N~~~L~~~l~---g~~~~~ 95 (105)
.-++.|+|++.=...|.+.|. |..|++
T Consensus 33 d~yl~f~GeiIl~eNl~~Yl~e~~g~~~k~ 62 (72)
T 2dsm_A 33 DDYVIDGGEIILRENLERYLREQLGFEFKN 62 (72)
T ss_dssp SCEEEETTEEEEHHHHHHHHHHTCCCEECC
T ss_pred CeEEEECCeeehHHHHHHHHHHHhCcEeec
Confidence 346788999998888888886 666554
No 24
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=25.12 E-value=32 Score=18.85 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=14.6
Q ss_pred CcEEEEEceeEcChHHHHH
Q 037758 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~~ 86 (105)
++.+++.+|.+|+-.....
T Consensus 22 ~~~wv~i~g~VYDvT~f~~ 40 (90)
T 1cxy_A 22 DDCWMAIHGKVYDLTPYVP 40 (90)
T ss_dssp TEEEEEETTEEEECTTTGG
T ss_pred CCEEEEECCEEEECccchh
Confidence 4688999999999665433
No 25
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=24.96 E-value=79 Score=20.68 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCCCeecCCCcEEEEEceeEcChHHHHHHhc
Q 037758 59 GDQPLYNEDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 59 ~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~ 89 (105)
..+|+...++++++=.-..|.|..+|.++|.
T Consensus 166 ~~gp~vTDnGN~IlD~~~~i~dp~~l~~~L~ 196 (226)
T 3ixq_A 166 KRGPVITDNGNMIIDVFMNIDDAIELEKEIN 196 (226)
T ss_dssp SSSBCBCTTSCEEEEEECCCSCHHHHHHHHH
T ss_pred CCCceEecCCCEEEEecCCCCCHHHHHHHHh
Confidence 4579988788887766678999999999996
No 26
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=24.75 E-value=33 Score=18.99 Aligned_cols=17 Identities=18% Similarity=0.591 Sum_probs=13.9
Q ss_pred CcEEEEEceeEcChHHH
Q 037758 68 KTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L 84 (105)
++.+++.+|.+||-...
T Consensus 24 ~~~wv~i~g~VYDvT~f 40 (92)
T 3ner_A 24 KELWLVIHGRVYDVTRF 40 (92)
T ss_dssp TEEEEEETTEEEECGGG
T ss_pred CCEEEEECCEEEEcccc
Confidence 56888999999996654
No 27
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=24.37 E-value=34 Score=18.76 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=14.2
Q ss_pred CcEEEEEceeEcChHHHH
Q 037758 68 KTVVVTVNGEIYNHKQLR 85 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~ 85 (105)
++.+++.+|.+||-....
T Consensus 20 ~~~wv~i~g~VYDvT~f~ 37 (88)
T 3lf5_A 20 DDCWICIRGFVYNVSPYM 37 (88)
T ss_dssp TEEEEEETTEEEECGGGT
T ss_pred CCEEEEECCEEEECccch
Confidence 567889999999966543
No 28
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=22.77 E-value=34 Score=24.38 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=12.7
Q ss_pred CcEEEEEceeEcChHH
Q 037758 68 KTVVVTVNGEIYNHKQ 83 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~ 83 (105)
++-++++-||+||+.-
T Consensus 174 D~KiVvyk~eVYNyDf 189 (439)
T 3j0f_E 174 DHKVVIHRGLVYNYDF 189 (439)
T ss_pred CceEEEecceeeccCC
Confidence 3468999999999753
No 29
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=22.71 E-value=32 Score=19.52 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=13.7
Q ss_pred CcEEEEEceeEcChHHH
Q 037758 68 KTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L 84 (105)
++.+++.+|.+||-...
T Consensus 23 ~~~wv~i~g~VYDvT~f 39 (104)
T 1hko_A 23 KSTWLILHYKVYDLTKF 39 (104)
T ss_dssp SSBEEEETTEEEEHHHH
T ss_pred CCEEEEECCEEEECCcc
Confidence 45788999999997654
No 30
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=22.28 E-value=35 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.3
Q ss_pred CcEEEEEceeEcChH
Q 037758 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~ 82 (105)
++-++++-||+||+.
T Consensus 174 D~KiVvyk~eVYNyD 188 (390)
T 1i9w_A 174 DNKIVVYKDEVFNQD 188 (390)
T ss_pred CceeEEEccceeccC
Confidence 346899999999964
No 31
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=21.61 E-value=95 Score=16.68 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.0
Q ss_pred CCcEEEEEcee-EcChHHHHHHhc
Q 037758 67 DKTVVVTVNGE-IYNHKQLREQLK 89 (105)
Q Consensus 67 ~~~~~l~~nGe-I~N~~~L~~~l~ 89 (105)
.++.++..||+ +.++.+++..+.
T Consensus 22 ~GD~I~~ing~~v~~~~d~~~~l~ 45 (95)
T 3id1_A 22 PGTELKAVDGIETPDWDAVRLQLV 45 (95)
T ss_dssp TTCEEEEETTEECSSHHHHHHHHH
T ss_pred CCCEEEEECCEECCCHHHHHHHHH
Confidence 46789999996 788899988874
No 32
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=21.35 E-value=46 Score=23.76 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=12.4
Q ss_pred CcEEEEEceeEcChH
Q 037758 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~ 82 (105)
++-++++-||+||+.
T Consensus 174 D~KiVvyk~eVYNyD 188 (442)
T 3j0c_A 174 DRKIVQYAGEIYNYD 188 (442)
T ss_dssp CSEEEEETTEEECCC
T ss_pred CceeEEecceeeccC
Confidence 456899999999964
No 33
>1ywm_A C protein alpha-antigen; beta sandwich, fibronectin fold, antiparallel three-helix BU surface active protein; 1.86A {Streptococcus agalactiae} PDB: 2o0i_1
Probab=21.00 E-value=1.5e+02 Score=18.70 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=24.8
Q ss_pred CCCCeecCCCcE-EEEEceeEcChHHHHHHhc
Q 037758 59 GDQPLYNEDKTV-VVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 59 ~~QP~~~~~~~~-~l~~nGeI~N~~~L~~~l~ 89 (105)
.-+|+...+|.+ ++..|=.+|+...||..+.
T Consensus 100 dG~Ph~k~DGQvdIvsv~ltvYDsT~lr~kId 131 (200)
T 1ywm_A 100 DGLPHVKTDGQIDIVSVALTIYDSTTLRDKIE 131 (200)
T ss_dssp TSSBCBCTTSSBCEEEEEEEEECCHHHHHHHH
T ss_pred CCCcccCCCCcEEEEEEEEEEeccHHHHHHHH
Confidence 457988777775 6677899999999999774
No 34
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=20.33 E-value=41 Score=23.62 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=12.3
Q ss_pred CcEEEEEceeEcChH
Q 037758 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~ 82 (105)
++-++++-||+||+.
T Consensus 176 D~KiVvyk~eVYNyD 190 (393)
T 3n40_F 176 DNKIVVYKGDVYNMD 190 (393)
T ss_dssp CSEEEEETTEEEECC
T ss_pred CceeEEecceeeccC
Confidence 456899999999964
Done!