Query 037759
Match_columns 479
No_of_seqs 309 out of 3220
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.8E-47 2.1E-51 402.0 15.7 415 17-453 390-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-32 2.5E-37 308.7 21.4 405 21-454 419-904 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.3E-22 2.8E-27 227.0 20.6 306 138-454 69-439 (968)
4 PLN00113 leucine-rich repeat r 99.9 5.2E-23 1.1E-27 230.1 17.4 306 136-454 116-486 (968)
5 KOG0444 Cytoskeletal regulator 99.9 1.7E-24 3.7E-29 212.2 -6.0 301 136-455 53-374 (1255)
6 KOG4194 Membrane glycoprotein 99.8 2.6E-21 5.5E-26 188.9 7.7 282 159-454 77-427 (873)
7 KOG4194 Membrane glycoprotein 99.8 2.2E-21 4.8E-26 189.3 3.1 314 135-461 99-463 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 1.7E-20 3.6E-25 175.8 -4.3 98 354-454 432-539 (565)
9 KOG0444 Cytoskeletal regulator 99.8 1.9E-20 4.1E-25 184.0 -5.1 314 136-468 30-365 (1255)
10 PLN03210 Resistant to P. syrin 99.7 4.8E-17 1E-21 183.2 18.1 122 305-436 779-910 (1153)
11 KOG0472 Leucine-rich repeat pr 99.6 4.4E-18 9.6E-23 159.7 -7.5 242 182-455 62-309 (565)
12 KOG0618 Serine/threonine phosp 99.5 4.4E-16 9.6E-21 160.1 -3.2 84 139-228 46-131 (1081)
13 KOG0617 Ras suppressor protein 99.5 2.2E-16 4.9E-21 132.0 -4.7 165 185-368 30-200 (264)
14 PRK15387 E3 ubiquitin-protein 99.5 3.2E-13 7E-18 142.7 13.4 250 141-454 204-456 (788)
15 KOG4237 Extracellular matrix p 99.5 4.7E-15 1E-19 139.3 -1.8 267 148-453 55-356 (498)
16 KOG0618 Serine/threonine phosp 99.4 1E-14 2.2E-19 150.3 -1.2 227 148-391 7-273 (1081)
17 PRK15370 E3 ubiquitin-protein 99.4 3.7E-13 8E-18 143.0 10.4 242 139-454 179-426 (754)
18 KOG0617 Ras suppressor protein 99.4 1.8E-15 3.8E-20 126.7 -7.8 152 154-315 26-184 (264)
19 KOG4658 Apoptotic ATPase [Sign 99.3 3.3E-12 7.2E-17 137.8 8.2 243 154-413 516-788 (889)
20 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.7E-17 123.2 -1.6 241 136-391 65-355 (498)
21 PRK15370 E3 ubiquitin-protein 99.2 3E-11 6.6E-16 128.5 8.1 200 137-371 198-401 (754)
22 PRK15387 E3 ubiquitin-protein 99.2 7.5E-11 1.6E-15 124.9 10.7 233 138-430 222-456 (788)
23 cd00116 LRR_RI Leucine-rich re 99.1 4.9E-11 1.1E-15 116.4 3.1 85 181-266 16-116 (319)
24 cd00116 LRR_RI Leucine-rich re 99.0 4.1E-10 8.9E-15 109.9 7.3 107 159-266 50-173 (319)
25 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.4E-14 94.6 4.1 114 152-275 10-127 (175)
26 PF14580 LRR_9: Leucine-rich r 98.8 3.7E-09 8.1E-14 92.3 5.2 130 184-337 15-147 (175)
27 KOG0532 Leucine-rich repeat (L 98.7 3.8E-10 8.3E-15 111.3 -4.5 148 182-339 92-243 (722)
28 PF00931 NB-ARC: NB-ARC domain 98.7 6E-09 1.3E-13 100.1 2.1 53 20-72 232-284 (287)
29 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.9E-13 72.9 3.1 58 189-246 2-60 (61)
30 KOG4341 F-box protein containi 98.6 5.1E-09 1.1E-13 100.0 -1.2 283 160-464 138-447 (483)
31 COG4886 Leucine-rich repeat (L 98.6 3.9E-08 8.4E-13 99.1 3.8 172 184-371 112-290 (394)
32 COG4886 Leucine-rich repeat (L 98.6 5.2E-08 1.1E-12 98.1 4.8 167 159-339 115-286 (394)
33 KOG1909 Ran GTPase-activating 98.6 1.9E-08 4E-13 94.2 1.3 236 179-429 21-308 (382)
34 KOG3207 Beta-tubulin folding c 98.6 3.1E-08 6.7E-13 95.2 2.5 202 208-428 118-335 (505)
35 PF13855 LRR_8: Leucine rich r 98.5 4.8E-08 1E-12 70.0 3.0 59 211-272 1-60 (61)
36 KOG1259 Nischarin, modulator o 98.5 1.8E-08 3.9E-13 92.3 -1.3 125 188-339 284-408 (490)
37 KOG0532 Leucine-rich repeat (L 98.5 5.4E-09 1.2E-13 103.4 -5.2 166 137-315 74-245 (722)
38 KOG1259 Nischarin, modulator o 98.4 2.5E-08 5.4E-13 91.4 -1.0 122 159-291 283-408 (490)
39 PLN03150 hypothetical protein; 98.4 7.4E-07 1.6E-11 94.5 8.5 98 189-290 419-523 (623)
40 KOG3207 Beta-tubulin folding c 98.3 2.3E-07 5E-12 89.3 2.2 147 137-290 120-279 (505)
41 PLN03150 hypothetical protein; 98.3 2.2E-06 4.7E-11 91.0 8.7 74 213-290 420-498 (623)
42 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.1E-11 57.3 3.3 38 189-226 2-39 (44)
43 KOG1909 Ran GTPase-activating 98.2 1E-06 2.3E-11 82.6 3.5 177 159-339 29-250 (382)
44 KOG2120 SCF ubiquitin ligase, 98.1 5.7E-07 1.2E-11 82.6 -0.1 101 159-266 209-321 (419)
45 PF12799 LRR_4: Leucine Rich r 98.1 3E-06 6.5E-11 55.8 3.2 41 211-252 1-41 (44)
46 KOG3665 ZYG-1-like serine/thre 98.0 4.9E-06 1.1E-10 88.3 4.3 82 159-245 147-230 (699)
47 KOG3665 ZYG-1-like serine/thre 97.9 1.2E-05 2.7E-10 85.3 4.8 126 159-291 121-259 (699)
48 KOG4579 Leucine-rich repeat (L 97.8 5.8E-06 1.3E-10 67.5 1.2 83 183-266 48-131 (177)
49 KOG0531 Protein phosphatase 1, 97.7 3.6E-06 7.8E-11 85.2 -1.9 80 184-266 91-170 (414)
50 KOG2982 Uncharacterized conser 97.7 2.6E-05 5.6E-10 71.9 3.4 78 185-266 68-154 (418)
51 KOG2120 SCF ubiquitin ligase, 97.7 4.8E-06 1E-10 76.7 -1.4 182 160-369 185-374 (419)
52 KOG2982 Uncharacterized conser 97.5 7.9E-05 1.7E-09 68.8 4.0 197 159-364 70-285 (418)
53 KOG4341 F-box protein containi 97.5 5.4E-06 1.2E-10 79.7 -4.0 294 138-451 138-460 (483)
54 KOG4579 Leucine-rich repeat (L 97.5 2.5E-05 5.4E-10 63.9 0.2 76 177-253 66-141 (177)
55 KOG1859 Leucine-rich repeat pr 97.4 6E-06 1.3E-10 84.5 -5.7 125 136-273 162-291 (1096)
56 PRK15386 type III secretion pr 97.2 0.0007 1.5E-08 66.8 6.8 79 138-230 52-134 (426)
57 PRK15386 type III secretion pr 97.2 0.0011 2.5E-08 65.4 7.5 36 190-227 74-111 (426)
58 KOG1859 Leucine-rich repeat pr 97.1 4.8E-05 1E-09 78.1 -2.7 83 181-266 180-262 (1096)
59 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.4E-08 58.1 4.8 80 189-272 43-124 (233)
60 COG5238 RNA1 Ran GTPase-activa 96.8 0.002 4.4E-08 59.0 5.4 240 182-436 24-319 (388)
61 KOG0531 Protein phosphatase 1, 96.8 0.00057 1.2E-08 69.2 2.0 106 159-275 94-200 (414)
62 KOG1947 Leucine rich repeat pr 96.7 0.00057 1.2E-08 70.6 1.2 138 181-338 181-329 (482)
63 KOG2123 Uncharacterized conser 96.7 0.00035 7.5E-09 64.1 -0.8 99 160-266 19-125 (388)
64 KOG1947 Leucine rich repeat pr 96.5 0.0007 1.5E-08 69.9 0.3 111 159-274 187-308 (482)
65 KOG1644 U2-associated snRNP A' 96.3 0.0045 9.7E-08 54.4 4.1 101 159-266 41-148 (233)
66 COG5238 RNA1 Ran GTPase-activa 96.3 0.0017 3.7E-08 59.5 1.4 129 207-339 88-251 (388)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0017 3.6E-08 59.3 1.2 35 210-245 64-101 (260)
68 PF00560 LRR_1: Leucine Rich R 96.0 0.0039 8.5E-08 34.1 1.3 20 190-209 2-21 (22)
69 KOG2739 Leucine-rich acidic nu 95.9 0.0061 1.3E-07 55.7 2.9 83 182-266 59-151 (260)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0055 1.2E-07 33.5 0.9 18 237-254 2-19 (22)
71 PF13306 LRR_5: Leucine rich r 95.3 0.033 7.2E-07 46.0 5.2 81 183-266 7-89 (129)
72 PF13306 LRR_5: Leucine rich r 95.1 0.054 1.2E-06 44.7 5.9 84 179-266 26-111 (129)
73 KOG3864 Uncharacterized conser 94.9 0.0019 4.2E-08 56.6 -3.4 83 359-454 102-187 (221)
74 KOG0473 Leucine-rich repeat pr 94.4 0.0023 5E-08 57.3 -4.3 92 179-274 33-124 (326)
75 KOG2123 Uncharacterized conser 94.2 0.0036 7.9E-08 57.6 -3.5 79 185-266 16-96 (388)
76 PF13504 LRR_7: Leucine rich r 94.1 0.03 6.5E-07 28.4 1.3 15 189-203 2-16 (17)
77 PF13504 LRR_7: Leucine rich r 93.8 0.033 7.2E-07 28.3 1.1 16 212-227 2-17 (17)
78 smart00369 LRR_TYP Leucine-ric 93.8 0.052 1.1E-06 30.9 2.0 20 211-230 2-21 (26)
79 smart00370 LRR Leucine-rich re 93.8 0.052 1.1E-06 30.9 2.0 20 211-230 2-21 (26)
80 smart00369 LRR_TYP Leucine-ric 89.9 0.29 6.3E-06 27.7 2.1 21 234-254 1-21 (26)
81 smart00370 LRR Leucine-rich re 89.9 0.29 6.3E-06 27.7 2.1 21 234-254 1-21 (26)
82 KOG3864 Uncharacterized conser 83.9 0.3 6.5E-06 43.2 -0.2 33 234-266 150-184 (221)
83 KOG0473 Leucine-rich repeat pr 83.5 0.048 1E-06 49.1 -5.3 84 201-288 31-117 (326)
84 smart00364 LRR_BAC Leucine-ric 77.1 1.5 3.3E-05 24.9 1.2 17 212-228 3-19 (26)
85 smart00367 LRR_CC Leucine-rich 75.6 1.4 3.1E-05 24.9 0.9 15 419-433 2-16 (26)
86 PF13516 LRR_6: Leucine Rich r 70.4 1.4 2.9E-05 24.4 -0.1 14 188-201 2-15 (24)
87 smart00365 LRR_SD22 Leucine-ri 68.6 3.8 8.2E-05 23.3 1.5 13 212-224 3-15 (26)
88 smart00368 LRR_RI Leucine rich 51.8 10 0.00022 21.8 1.4 14 188-201 2-15 (28)
89 PF12802 MarR_2: MarR family; 40.8 1.2E+02 0.0025 20.8 6.6 59 34-100 2-60 (62)
90 PF14162 YozD: YozD-like prote 28.6 63 0.0014 21.6 2.4 29 65-93 22-52 (57)
91 KOG3763 mRNA export factor TAP 26.8 58 0.0012 33.8 3.0 38 159-198 217-254 (585)
92 PF05725 FNIP: FNIP Repeat; I 26.6 88 0.0019 20.1 2.9 13 355-367 9-21 (44)
93 PF15385 SARG: Specifically an 24.3 37 0.00081 34.9 1.2 16 31-46 7-22 (497)
94 PF13463 HTH_27: Winged helix 24.3 2E+02 0.0044 19.9 4.9 32 76-107 33-64 (68)
95 KOG4308 LRR-containing protein 22.4 8.8 0.00019 39.5 -3.7 107 159-266 171-298 (478)
96 PF13730 HTH_36: Helix-turn-he 22.1 2.4E+02 0.0052 18.7 4.6 51 34-91 2-55 (55)
97 TIGR00864 PCC polycystin catio 22.1 60 0.0013 40.4 2.4 31 194-224 1-32 (2740)
98 KOG3763 mRNA export factor TAP 20.2 68 0.0015 33.3 2.1 85 182-266 212-309 (585)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-47 Score=402.03 Aligned_cols=415 Identities=26% Similarity=0.336 Sum_probs=315.8
Q ss_pred chhhhhhHHHHHHHhccCCchhhHHHHhhhcccCCCceechhhHHHHHHhcCCCCC-----ChHHHHHHHHHHHHhCCce
Q 037759 17 IEEALDEPRGLQVVAYCMLPFYLKLCCLYLSVFLVHFEISTKQSYQLWIAEGFIPN-----NNEATAERYLEQLINGGFV 91 (479)
Q Consensus 17 ~~~~~~~i~~~L~lSY~~L~~~~K~cfl~~a~fp~~~~i~~~~Li~~w~a~g~i~~-----~~~~~~~~~~~~L~~~~ll 91 (479)
.+.+++.|+++|++|||.||+++|.||+|||+|||||+|++++||.+||||||+.+ +++|.|..|+++|+++||+
T Consensus 390 ~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 390 FSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999999999977 7899999999999999999
Q ss_pred eeeecCCCCCeeEEEeChhHHHHHHHhhh-----hCCceeeecC-----CCcccCCCCeEEEEEEcCCCCccccccc-CC
Q 037759 92 DAGKRGVRGRINTCSIPGHCSPALLTVAF-----EGEFFISPIM-----DQEVKLWENVKRFTVHGNLNDFEFLDHF-DS 160 (479)
Q Consensus 92 ~~~~~~~~g~~~~~~mHdli~~l~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~ 160 (479)
+..... ++..+|+|||++|++|.+++. +++.+. ..+ ......+..+|++++. ++....++... ++
T Consensus 470 ~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~ 545 (889)
T KOG4658|consen 470 IEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENP 545 (889)
T ss_pred hhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEE-ECCcCccccccccchhheeEEEEe-ccchhhccCCCCCC
Confidence 988754 666889999999999999999 666444 222 1233366789999999 88888788888 99
Q ss_pred CccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-CccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcE
Q 037759 161 FLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYT 239 (479)
Q Consensus 161 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~ 239 (479)
+|++|.+.++... ...+...+|..|+.||||||++|. +.++|..+++|.+||||+++++.+..+|.++ ++|.+|.+
T Consensus 546 ~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIY 622 (889)
T ss_pred ccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhhe
Confidence 9999999998631 455677889999999999999876 7799999999999999999999999999999 99999999
Q ss_pred EecCCC-cccccchhhhcCccCcEEEeccCCCCCCCC-C----CCCCCcccCeeecCCC-CCChhhhcCCCCCCCeEEEE
Q 037759 240 LDMPFS-YIDHTADEFWKMSKLRYLNFGSITLSAHPG-K----YCGSLENLDFISALHP-CCCPEDILGRLPNLQNIQIW 312 (479)
Q Consensus 240 L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p----~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~ 312 (479)
|++..+ .+..+|.....|++||+|.+. ...... . .+.+|++|+.+.+... ...... +..++.|+.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~---~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~-l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLP---RSALSNDKLLLKELENLEHLENLSITISSVLLLED-LLGMTRLRSLLQS 698 (889)
T ss_pred eccccccccccccchhhhcccccEEEee---ccccccchhhHHhhhcccchhhheeecchhHhHhh-hhhhHHHHHHhHh
Confidence 999999 666666666779999999999 543222 2 2336666666666541 122233 4444444422222
Q ss_pred ---eCCccchHHHHHHhccCCCccEEEeecCCC----------------CCCccEEEe---------ecccccCcceEEE
Q 037759 313 ---GDLIYYQSLLSKILYRLSCLESLKLAKESK----------------IPRRSNIIL---------AKYQFPPSLTHLS 364 (479)
Q Consensus 313 ---~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----------------lp~L~~L~l---------~~~~lp~~L~~L~ 364 (479)
.+. .......++..+.+|+.|.+.+..+ ||++.++.+ ....+||+|+.|.
T Consensus 699 l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 699 LSIEGC--SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLS 776 (889)
T ss_pred hhhccc--ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEE
Confidence 111 3444556667778888888876111 222222222 1124569999999
Q ss_pred EecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCC
Q 037759 365 FLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKS 444 (479)
Q Consensus 365 l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~ 444 (479)
+..|...+.+++....+..+.......+.++.++ .+.+...++.+....-.++.|+.+.+..||++..+| .
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~--~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P-------~ 847 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLR--MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP-------L 847 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEecccccccce--eeecCCCCceeEecccCccchhheehhcCcccccCc-------c
Confidence 9999988899988888887776555544444443 355555666665555567779999999998888776 4
Q ss_pred CCEEEeeCC
Q 037759 445 LNKLELWWP 453 (479)
Q Consensus 445 L~~L~l~~c 453 (479)
+.++.+.+|
T Consensus 848 ~~~~~i~~~ 856 (889)
T KOG4658|consen 848 LSTLTIVGC 856 (889)
T ss_pred ccccceecc
Confidence 555666665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-32 Score=308.72 Aligned_cols=405 Identities=16% Similarity=0.082 Sum_probs=283.7
Q ss_pred hhhHHHHHHHhccCCch-hhHHHHhhhcccCCCceechhhHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeecCCC
Q 037759 21 LDEPRGLQVVAYCMLPF-YLKLCCLYLSVFLVHFEISTKQSYQLWIAEGFIPNNNEATAERYLEQLINGGFVDAGKRGVR 99 (479)
Q Consensus 21 ~~~i~~~L~lSY~~L~~-~~K~cfl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~ 99 (479)
.++|+++|++|||+|++ ..|.||++||+||.++.+ +.|..|+|.+.+. ++..++.|+++|||+...
T Consensus 419 ~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~---- 485 (1153)
T PLN03210 419 DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE---- 485 (1153)
T ss_pred cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC----
Confidence 35799999999999987 599999999999998754 3477888887664 334489999999998753
Q ss_pred CCeeEEEeChhHHHHHHHhhhhCCce----eeecCCC-------cccCCCCeEEEEEEcCCCCcc--c-cccc--CCCcc
Q 037759 100 GRINTCSIPGHCSPALLTVAFEGEFF----ISPIMDQ-------EVKLWENVKRFTVHGNLNDFE--F-LDHF--DSFLH 163 (479)
Q Consensus 100 g~~~~~~mHdli~~l~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~l~l~~~~~~~~--~-~~~~--~~~Lr 163 (479)
..++|||++++||+.+++++... .+..+.. .......++.+++. .....+ + +..+ +++|+
T Consensus 486 ---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~-~~~~~~~~i~~~aF~~m~~L~ 561 (1153)
T PLN03210 486 ---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD-IDEIDELHIHENAFKGMRNLL 561 (1153)
T ss_pred ---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEec-cCccceeeecHHHHhcCcccc
Confidence 35899999999999999876310 0011111 11234567777766 333322 2 2234 88999
Q ss_pred EEEEecCCCCC--CCcchhHHHhCcC-CceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEE
Q 037759 164 SLLHLTLGSHY--LDSNYCEKIYKMF-KFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTL 240 (479)
Q Consensus 164 ~L~l~~~~~~~--~~~~~~~~~~~~l-~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L 240 (479)
.|.+..+.... ......+..|..+ .+||.|++.++.+..+|..+ ...+|+.|++++|.+..+|.++ ..+++|+.|
T Consensus 562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L 639 (1153)
T PLN03210 562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-HSLTGLRNI 639 (1153)
T ss_pred EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc-ccCCCCCEE
Confidence 99887653110 0111223445555 46999999999999999887 5789999999999999999999 999999999
Q ss_pred ecCCC-cccccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCC--CCChhhhcCCCCCCCeEEEEeC
Q 037759 241 DMPFS-YIDHTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHP--CCCPEDILGRLPNLQNIQIWGD 314 (479)
Q Consensus 241 ~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 314 (479)
++++| .+..+|. ++.+++|++|+++ +|.... | .++++++|+.+++.+. ...++. ..++++|+.|++++|
T Consensus 640 ~Ls~~~~l~~ip~-ls~l~~Le~L~L~---~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 640 DLRGSKNLKEIPD-LSMATNLETLKLS---DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGC 714 (1153)
T ss_pred ECCCCCCcCcCCc-cccCCcccEEEec---CCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEeCCCC
Confidence 99998 7888885 8899999999999 998776 8 8889999999988752 122233 237889999999987
Q ss_pred CccchHHHHHHhccCCCccEEEeecCCC--------CCCccEEEee-----------------cccccCcceEEEEeccc
Q 037759 315 LIYYQSLLSKILYRLSCLESLKLAKESK--------IPRRSNIILA-----------------KYQFPPSLTHLSFLNIE 369 (479)
Q Consensus 315 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~--------lp~L~~L~l~-----------------~~~lp~~L~~L~l~~~~ 369 (479)
. ....++.. .++|++|++.+..+ +++|+.|.+. ...+|++|+.|++++|.
T Consensus 715 ~--~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 715 S--RLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred C--Cccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 6 54444432 35677777766211 1234443330 01123566666666665
Q ss_pred CCCCCccccccCccCceEEeccC----------CCCCcceEeeccCCCCC--------------------eeEEcCCCCC
Q 037759 370 LMDDPMPALEKLAVLRKLACSSD----------GFPKLKVLHLKSMLWLQ--------------------EWTMGIRAMP 419 (479)
Q Consensus 370 l~~~~~~~l~~l~~L~~l~~~~~----------~~~~L~~L~l~~~~~l~--------------------~~~~~~~~~~ 419 (479)
........++.+++|+.|.++.. .+++|+.|.+++|..+. ++|...+.++
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCC
Confidence 33333334555666666555432 14555666666554443 3444445688
Q ss_pred CccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 420 KLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 420 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
+|+.|++.+|++++.+|..+..+++|+.+++++|+
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999999999999999888899999999999997
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.3e-22 Score=226.98 Aligned_cols=306 Identities=20% Similarity=0.217 Sum_probs=149.1
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc--------------
Q 037759 138 ENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-------------- 201 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-------------- 201 (479)
.+++.+.+.++.....++..+ +++|+.|.+.+|.. ...++...+..+++|++|++++|.+.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~---~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL---SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc---CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEE
Confidence 355566655222222333333 56666666665552 12333444445555555555555543
Q ss_pred ---------cCchhhcccccCCeeecCCCCCc-cCChhHHhcCcCCcEEecCCCccc-ccchhhhcCccCcEEEeccCCC
Q 037759 202 ---------RYPSEIEYVFLLRYLNLNIPSLK-SLPSSLLNSLLNLYTLDMPFSYID-HTADEFWKMSKLRYLNFGSITL 270 (479)
Q Consensus 202 ---------~lp~~l~~L~~L~~L~L~~~~l~-~lp~~i~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~ 270 (479)
.+|..++++++|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++++++|++|+++ +
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~---~ 221 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG---Y 221 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc---C
Confidence 33444444555555555544433 344444 45555555555544322 344444555555555555 4
Q ss_pred CCCCC--C-CCCCCcccCeeecCCC---CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCC---
Q 037759 271 SAHPG--K-YCGSLENLDFISALHP---CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKES--- 341 (479)
Q Consensus 271 ~~~~~--p-~i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--- 341 (479)
|.... | .++++++|+.+++.++ ...+.. ++.+++|+.|+++++. .....+..+..+++|++|+++++.
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK--LSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe--eeccCchhHhhccCcCEEECcCCeecc
Confidence 44332 4 4444444444444431 122333 4455555555555443 333344444455555555554411
Q ss_pred CC-------CCccEEEe-----------ecccccCcceEEEEecccCCCCCccccccCccCceEEeccCC----------
Q 037759 342 KI-------PRRSNIIL-----------AKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDG---------- 393 (479)
Q Consensus 342 ~l-------p~L~~L~l-----------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~---------- 393 (479)
.+ ++|+.|++ ++..+ ++|+.|++++|.+.......++.+++|+.++++.+.
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 11 24444444 12234 455555555555443333344455555555444322
Q ss_pred -CCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 394 -FPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 394 -~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
+++|+.|.+.++.-...++...+.+++|+.|++.+|.....+|..+..+++|+.+++++|.
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 2344555554433222333334557778888887765444667777778888888887765
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=5.2e-23 Score=230.11 Aligned_cols=306 Identities=19% Similarity=0.215 Sum_probs=178.3
Q ss_pred CCCCeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cCchhhcccccCC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RYPSEIEYVFLLR 214 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~l~~L~~L~ 214 (479)
....++++.+..+.....+|...+++|++|.+.+|. .....+..+..+++|++|++++|.+. .+|..++++++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~----~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM----LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCc----ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 345667777663322233443336677777777766 33344566777777888888777765 6677777777777
Q ss_pred eeecCCCCCc-cCChhHHhcCcCCcEEecCCCccc-ccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeec
Q 037759 215 YLNLNIPSLK-SLPSSLLNSLLNLYTLDMPFSYID-HTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISA 289 (479)
Q Consensus 215 ~L~L~~~~l~-~lp~~i~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~ 289 (479)
+|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++++++|++|+++ +|.... | .++++++|+.+++
T Consensus 192 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~---~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 192 FLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV---YNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred eeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc---CceeccccChhHhCCCCCCEEEC
Confidence 7777777765 566666 77777777777777544 567777777777777777 766554 5 6666677776666
Q ss_pred CCC---CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC----------CCCccEEEe-----
Q 037759 290 LHP---CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK----------IPRRSNIIL----- 351 (479)
Q Consensus 290 ~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----------lp~L~~L~l----- 351 (479)
.+. ...+.. +..+++|+.|++++|. .....+..+..+++|+.|+++++.+ +|+|+.|++
T Consensus 268 ~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 268 YQNKLSGPIPPS-IFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred cCCeeeccCchh-HhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 542 223344 6666677777776555 4445555666666666666655111 145555555
Q ss_pred ------ecccccCcceEEEEecccCCCCCccc------------------------cccCccCceEEeccC---------
Q 037759 352 ------AKYQFPPSLTHLSFLNIELMDDPMPA------------------------LEKLAVLRKLACSSD--------- 392 (479)
Q Consensus 352 ------~~~~lp~~L~~L~l~~~~l~~~~~~~------------------------l~~l~~L~~l~~~~~--------- 392 (479)
++..+ ++|+.|++++|.+....... ++.+++|+.+.++.+
T Consensus 345 ~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 345 SGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred cCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 12234 55666666665554333333 344444444444332
Q ss_pred --CCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 393 --GFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 393 --~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
.+++|+.|+++++.-...++.....+++|+.|++.+|.....+|..+ ..++|+.|++++|.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 13344444444432111222222345666666666665444555433 34667777777665
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.7e-24 Score=212.24 Aligned_cols=301 Identities=20% Similarity=0.244 Sum_probs=236.3
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLL 213 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L 213 (479)
...++.|+++. .+....+...+ +|.||++.+..|+.. +.-+|..+-.++.|.+|||++|++.+.|..+.+-+++
T Consensus 53 ~lqkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 53 RLQKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred HHhhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchhcccccceeeecchhhhhhcchhhhhhcCc
Confidence 35678888888 77666677776 999999999988853 3334555667999999999999999999999999999
Q ss_pred CeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecC
Q 037759 214 RYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISAL 290 (479)
Q Consensus 214 ~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~ 290 (479)
-.|+|++|.|..+|..+|.+|+.|-.||+++|.++.+|+.+..|..|++|.++ ++.... . .+.+++.|+.+..+
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls---~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS---NNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC---CChhhHHHHhcCccchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999 876554 2 45577777777776
Q ss_pred CC----CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEe
Q 037759 291 HP----CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFL 366 (479)
Q Consensus 291 ~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~ 366 (479)
+. ...+.. +..+.+|+.++++.| +...+|..+.++++|+.|+++++ .++.|++..... .+|+.|+++
T Consensus 206 ~TqRTl~N~Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N----~iteL~~~~~~W-~~lEtLNlS 276 (1255)
T KOG0444|consen 206 NTQRTLDNIPTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN----KITELNMTEGEW-ENLETLNLS 276 (1255)
T ss_pred cccchhhcCCCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC----ceeeeeccHHHH-hhhhhhccc
Confidence 52 234555 788899999999865 56778889999999999999873 344554433444 677777777
Q ss_pred cccCCCCCccccccCccCceEEecc------------CCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCC
Q 037759 367 NIELMDDPMPALEKLAVLRKLACSS------------DGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKM 434 (479)
Q Consensus 367 ~~~l~~~~~~~l~~l~~L~~l~~~~------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 434 (479)
.|+++. ....+.+|+.|+.|...+ +.+.+|+.+...+ ..++-+|.+...+++|+.|.+.. +.+-+
T Consensus 277 rNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiT 353 (1255)
T KOG0444|consen 277 RNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLIT 353 (1255)
T ss_pred cchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceee
Confidence 777642 233456666666544433 2234566666555 45777777778899999999985 78889
Q ss_pred CcccccCCCCCCEEEeeCCcH
Q 037759 435 IPEQLWCLKSLNKLELWWPEL 455 (479)
Q Consensus 435 lp~~l~~l~~L~~L~l~~c~~ 455 (479)
+|.++.-++.|+.|++.++|+
T Consensus 354 LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred chhhhhhcCCcceeeccCCcC
Confidence 999999999999999999883
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-21 Score=188.87 Aligned_cols=282 Identities=21% Similarity=0.219 Sum_probs=205.0
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
.+..++|.+++|. +.++....|.++++|+.+++.+|.++.+|.......+|+.|+|.+|.|.++-.+-+.-++.|+
T Consensus 77 p~~t~~LdlsnNk----l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK----LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccc----cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 7888999999998 778888999999999999999999999998888888899999999999988766558899999
Q ss_pred EEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecCCC---CCChhhhcCCCCCCCeEEE
Q 037759 239 TLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISALHP---CCCPEDILGRLPNLQNIQI 311 (479)
Q Consensus 239 ~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l 311 (479)
.||++.|.+.++|. .+..-.++++|+++ ++.... . .+.++.+|-.+.+.++ ...... +.+|++|+.|++
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La---~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~-Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLA---SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRS-FKRLPKLESLDL 228 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeec---cccccccccccccccchheeeecccCcccccCHHH-hhhcchhhhhhc
Confidence 99999999999984 46777889999999 888777 3 5667777777777652 222334 777999999999
Q ss_pred EeCCccchHHHHHHhccCCCccEEEeec-------CCCC---CCccEEEe-----------ecccccCcceEEEEecccC
Q 037759 312 WGDLIYYQSLLSKILYRLSCLESLKLAK-------ESKI---PRRSNIIL-----------AKYQFPPSLTHLSFLNIEL 370 (479)
Q Consensus 312 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~-------~~~l---p~L~~L~l-----------~~~~lp~~L~~L~l~~~~l 370 (479)
..|. ....-...|+++++|+.|.+.. ++.| .+++.|++ |+..+ ..|+.|++++|.|
T Consensus 229 nrN~--irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI 305 (873)
T KOG4194|consen 229 NRNR--IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAI 305 (873)
T ss_pred cccc--eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhh
Confidence 8765 4444456677888888887765 2222 35666666 55555 5555555555555
Q ss_pred CCCCccccccCccCceEEecc------------------------CC-----------CCCcceEeeccCCCCCeeEEc-
Q 037759 371 MDDPMPALEKLAVLRKLACSS------------------------DG-----------FPKLKVLHLKSMLWLQEWTMG- 414 (479)
Q Consensus 371 ~~~~~~~l~~l~~L~~l~~~~------------------------~~-----------~~~L~~L~l~~~~~l~~~~~~- 414 (479)
.........-.+.|++|+++. +. +++|++|++.+.. + .|.++
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-l-s~~IED 383 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-L-SWCIED 383 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-E-EEEEec
Confidence 444444444444444444433 22 3455555555421 1 22222
Q ss_pred ----CCCCCCccEeEEecCCCCCCCc-ccccCCCCCCEEEeeCCc
Q 037759 415 ----IRAMPKLECSILNPCAHLKMIP-EQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 415 ----~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 454 (479)
...+++|++|.+.+ ++++.+| .++..+++|+.|++.+++
T Consensus 384 aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 23489999999998 7899998 477888999999988765
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-21 Score=189.28 Aligned_cols=314 Identities=19% Similarity=0.174 Sum_probs=221.0
Q ss_pred cCCCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccc
Q 037759 135 KLWENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVF 211 (479)
Q Consensus 135 ~~~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~ 211 (479)
...++++.+.+. ++....+|... ..+++.|.+.+|. +..+-.+.++.++.||+|||+.|.|.++| .++..-.
T Consensus 99 ~nl~nLq~v~l~-~N~Lt~IP~f~~~sghl~~L~L~~N~----I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ 173 (873)
T KOG4194|consen 99 YNLPNLQEVNLN-KNELTRIPRFGHESGHLEKLDLRHNL----ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKV 173 (873)
T ss_pred hcCCcceeeeec-cchhhhcccccccccceeEEeeeccc----cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence 456788888888 78888788876 7779999999888 66677788888899999999999888776 3466667
Q ss_pred cCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCee
Q 037759 212 LLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFI 287 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l 287 (479)
++++|+|++|+|+.+-.+-|.++.+|.+|.++.|.++.+|.. |++|++|+.|++. .++... . .+..|.+|+.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn---rN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN---RNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc---ccceeeehhhhhcCchhhhhh
Confidence 889999999998888777778888999999999988888854 6679999999888 766444 2 44455655555
Q ss_pred ecCCCC-CChhh-hcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC----------CCCccEEEe----
Q 037759 288 SALHPC-CCPED-ILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK----------IPRRSNIIL---- 351 (479)
Q Consensus 288 ~~~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----------lp~L~~L~l---- 351 (479)
.+..+. ..+.+ .+-.+.+++.|++..|. ....-..++.+++.|+.|+++.+.+ -++|+.|++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 554311 11111 15566777777777655 5555555667777777777776211 145555555
Q ss_pred -------ecccccCcceEEEEecccCCCCCccccccCccCceEEecc--------------CCCCCcceEeeccCCCCCe
Q 037759 352 -------AKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS--------------DGFPKLKVLHLKSMLWLQE 410 (479)
Q Consensus 352 -------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~--------------~~~~~L~~L~l~~~~~l~~ 410 (479)
.+..+ ..|+.|.|+.|.+.-..-..+..+.+|++|+++. +++++|+.|.+.+ .+++.
T Consensus 329 i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~ 406 (873)
T KOG4194|consen 329 ITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS 406 (873)
T ss_pred cccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeee
Confidence 12233 5677777777776544444566677777666543 3478999999988 46777
Q ss_pred eEE-cCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEe------eCCcHHHHHHh
Q 037759 411 WTM-GIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLEL------WWPELELRQQL 461 (479)
Q Consensus 411 ~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l------~~c~~~~~~~~ 461 (479)
++- ....++.|+.|++.+++...--|.++..+ .|++|.+ .+|...|..+.
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 763 34568999999999955333346778877 8888755 47886666543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.7e-20 Score=175.82 Aligned_cols=98 Identities=28% Similarity=0.216 Sum_probs=73.6
Q ss_pred ccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcce---------EeeccCCCCCeeEEc-CCCCCCccE
Q 037759 354 YQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKV---------LHLKSMLWLQEWTMG-IRAMPKLEC 423 (479)
Q Consensus 354 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~---------L~l~~~~~l~~~~~~-~~~~~~L~~ 423 (479)
.++ ++|+.|++++|.+.+.+. .++.+-.|+.++++.+.|+.+.. ..+..-.++.+++.+ ...|.+|.+
T Consensus 432 ~~l-~kLt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQL-QKLTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhh-hcceeeecccchhhhcch-hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 356 888888888887644333 45667778888888888875432 122222455555544 567999999
Q ss_pred eEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 424 SILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 424 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
|++.+ +.+..+|+.++++++|++|+++|+|
T Consensus 510 LDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCC-CchhhCChhhccccceeEEEecCCc
Confidence 99998 7899999999999999999999998
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.9e-20 Score=184.04 Aligned_cols=314 Identities=17% Similarity=0.168 Sum_probs=233.0
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc--cCchhhcccc
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI--RYPSEIEYVF 211 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~l~~L~ 211 (479)
..++++.+.+. ......+|+.+ +.+|+.|.+.+|+. ..+ ...++.++.||.+++..|++. .+|..+.+|.
T Consensus 30 qMt~~~WLkLn-rt~L~~vPeEL~~lqkLEHLs~~HN~L----~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 30 QMTQMTWLKLN-RTKLEQVPEELSRLQKLEHLSMAHNQL----ISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLK 103 (1255)
T ss_pred HhhheeEEEec-hhhhhhChHHHHHHhhhhhhhhhhhhh----Hhh-hhhhccchhhHHHhhhccccccCCCCchhcccc
Confidence 56778889888 77788899998 99999999999983 333 356788999999999999987 6899999999
Q ss_pred cCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeee
Q 037759 212 LLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFIS 288 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~ 288 (479)
.|..|||++|.+++.|..+ ...+++-+|++++|+|+.||.. +.+|+.|-+|+++ .++... | .+..|..|+.+.
T Consensus 104 dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS---~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS---NNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc---cchhhhcCHHHHHHhhhhhhh
Confidence 9999999999999999999 9999999999999999999966 7899999999999 888777 7 887788888888
Q ss_pred cCCCCCC---hhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEE
Q 037759 289 ALHPCCC---PEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSF 365 (479)
Q Consensus 289 ~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l 365 (479)
++++... +.. +..++.|+.|.+++.+- ....+|.++..+.+|..++++.++. |.+-. .+..+ ++|+.|++
T Consensus 180 Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~L-p~vPe---cly~l-~~LrrLNL 252 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNL-PIVPE---CLYKL-RNLRRLNL 252 (1255)
T ss_pred cCCChhhHHHHhc-Cccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCC-CcchH---HHhhh-hhhheecc
Confidence 8764333 333 45556677777775331 5566777888888899888886332 11100 22344 88999999
Q ss_pred ecccCCCCCccccccCccCceEEeccC----------CCCCcceEeeccCC-CCCeeEEcCCCCCCccEeEEecCCCCCC
Q 037759 366 LNIELMDDPMPALEKLAVLRKLACSSD----------GFPKLKVLHLKSML-WLQEWTMGIRAMPKLECSILNPCAHLKM 434 (479)
Q Consensus 366 ~~~~l~~~~~~~l~~l~~L~~l~~~~~----------~~~~L~~L~l~~~~-~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 434 (479)
++|.+++..+. .+.-.+|++|.++.+ .+++|+.|...+.. ..+.+|.+.|.+..|+.+...+ ++++-
T Consensus 253 S~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LEl 330 (1255)
T KOG0444|consen 253 SGNKITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLEL 330 (1255)
T ss_pred CcCceeeeecc-HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-ccccc
Confidence 99987654442 233344555555443 25667777766532 2345677778888888888887 67888
Q ss_pred CcccccCCCCCCEEEeeCCc-HHHHHHhhhccccc
Q 037759 435 IPEQLWCLKSLNKLELWWPE-LELRQQLREFEDKE 468 (479)
Q Consensus 435 lp~~l~~l~~L~~L~l~~c~-~~~~~~~~~~~~~~ 468 (479)
+|.++..+..|+.|.+..+. ..+.+.+.-..+-+
T Consensus 331 VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLK 365 (1255)
T ss_pred CchhhhhhHHHHHhcccccceeechhhhhhcCCcc
Confidence 88888888888888887654 23444444433333
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=4.8e-17 Score=183.21 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccC
Q 037759 305 NLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVL 384 (479)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L 384 (479)
+|+.|+++++. ....++.+++++++|+.|++++...+ +.+.-. ..+ ++|+.|++++|.... .++. ..++|
T Consensus 779 sL~~L~Ls~n~--~l~~lP~si~~L~~L~~L~Ls~C~~L---~~LP~~-~~L-~sL~~L~Ls~c~~L~-~~p~--~~~nL 848 (1153)
T PLN03210 779 SLTRLFLSDIP--SLVELPSSIQNLHKLEHLEIENCINL---ETLPTG-INL-ESLESLDLSGCSRLR-TFPD--ISTNI 848 (1153)
T ss_pred cchheeCCCCC--CccccChhhhCCCCCCEEECCCCCCc---CeeCCC-CCc-cccCEEECCCCCccc-cccc--ccccc
Confidence 44455555444 44445555555556666655431110 000000 022 556666666654211 1111 12455
Q ss_pred ceEEeccC----------CCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCc
Q 037759 385 RKLACSSD----------GFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIP 436 (479)
Q Consensus 385 ~~l~~~~~----------~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp 436 (479)
+.|+++.+ .+++|+.|.+.+|+++..++.....+++|+.+++.+|..++.++
T Consensus 849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 55555443 36789999999999999998888889999999999999987654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=4.4e-18 Score=159.68 Aligned_cols=242 Identities=23% Similarity=0.198 Sum_probs=148.6
Q ss_pred HHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCc
Q 037759 182 KIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLR 261 (479)
Q Consensus 182 ~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~ 261 (479)
+.+.++..|.||++.+|.+.++|++++.+..++.|+.++|.+.++|+.+ +++.+|..|+.++|.+.++|++++.+..|.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 3445556666666666666666666666666666666666666666666 666666666666666666666666666666
Q ss_pred EEEeccCCCCCCCC-C-CCCCCcccCeeecCC--CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEe
Q 037759 262 YLNFGSITLSAHPG-K-YCGSLENLDFISALH--PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKL 337 (479)
Q Consensus 262 ~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 337 (479)
.++.. ++.... | +++++..|..+.+.+ ....+++ .-+++.|++|+...+ ..+.+|..++.+.+|+-|++
T Consensus 141 dl~~~---~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 141 DLDAT---NNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSN---LLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhhcc---ccccccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchh---hhhcCChhhcchhhhHHHHh
Confidence 66655 555555 5 555555554444433 1122222 223555666655543 44555555555555555555
Q ss_pred ecCCC--CCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcC
Q 037759 338 AKESK--IPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGI 415 (479)
Q Consensus 338 ~~~~~--lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 415 (479)
..+++ +|. +++. +.|.+|.+..|.+...+..... .++++..|++.+ .+++++|.+.
T Consensus 214 ~~Nki~~lPe-------f~gc-s~L~Elh~g~N~i~~lpae~~~-------------~L~~l~vLDLRd-Nklke~Pde~ 271 (565)
T KOG0472|consen 214 RRNKIRFLPE-------FPGC-SLLKELHVGENQIEMLPAEHLK-------------HLNSLLVLDLRD-NKLKEVPDEI 271 (565)
T ss_pred hhcccccCCC-------CCcc-HHHHHHHhcccHHHhhHHHHhc-------------ccccceeeeccc-cccccCchHH
Confidence 43221 111 1222 5566666666665433222222 356677788776 4688899888
Q ss_pred CCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCcH
Q 037759 416 RAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPEL 455 (479)
Q Consensus 416 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 455 (479)
.-+.+|++|++++ +.++.+|..++++ .|+.|.+.|+|-
T Consensus 272 clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 272 CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence 8899999999998 6899999999999 999999999983
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=4.4e-16 Score=160.14 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=59.5
Q ss_pred CeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCee
Q 037759 139 NVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYL 216 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L 216 (479)
++.++.+. ++....+|..+ .++|+.|.++.|.. ..+ +....++++|++|+|.+|.+..+|.++..+++|++|
T Consensus 46 ~L~~l~ls-nn~~~~fp~~it~l~~L~~ln~s~n~i----~~v-p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLS-NNQISSFPIQITLLSHLRQLNLSRNYI----RSV-PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eeEEeecc-ccccccCCchhhhHHHHhhcccchhhH----hhC-chhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 36677777 66666677766 77788777777762 223 366777777888888777777777777777777777
Q ss_pred ecCCCCCccCCh
Q 037759 217 NLNIPSLKSLPS 228 (479)
Q Consensus 217 ~L~~~~l~~lp~ 228 (479)
++++|.+..+|.
T Consensus 120 dlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 120 DLSFNHFGPIPL 131 (1081)
T ss_pred ccchhccCCCch
Confidence 777777666553
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-16 Score=132.02 Aligned_cols=165 Identities=22% Similarity=0.261 Sum_probs=125.3
Q ss_pred CcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEE
Q 037759 185 KMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLN 264 (479)
Q Consensus 185 ~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 264 (479)
-.+.++..|-|++|+++.+|..+..|.+|+.|++.+|.++++|.++ +.+++|++|++..|.+..+|.+|+.++.|+.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3456667778888888888888888888888888888888888888 888888888888888888888888888888888
Q ss_pred eccCCCCCCCC---C-CCCCCcccCeeecCC--CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEee
Q 037759 265 FGSITLSAHPG---K-YCGSLENLDFISALH--PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLA 338 (479)
Q Consensus 265 l~~~~~~~~~~---p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 338 (479)
+. .+...+ | .+..+++|+.+.++. -...+.+ ++++++|+.|.++.+ ..-.++..++.+.+|++|++.
T Consensus 109 lt---ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 109 LT---YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred cc---ccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcc
Confidence 88 655444 6 677777777776665 2345677 899999999999866 456778888889999999988
Q ss_pred cCCCCCCccEEEeecccccCcceEEEEecc
Q 037759 339 KESKIPRRSNIILAKYQFPPSLTHLSFLNI 368 (479)
Q Consensus 339 ~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~ 368 (479)
++ .|+ -+||.|..|++.++
T Consensus 182 gn----rl~-------vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 182 GN----RLT-------VLPPELANLDLVGN 200 (264)
T ss_pred cc----eee-------ecChhhhhhhhhhh
Confidence 72 122 22566666666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=3.2e-13 Score=142.68 Aligned_cols=250 Identities=18% Similarity=0.075 Sum_probs=145.7
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCC
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNI 220 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~ 220 (479)
..|.+. ++....+|+.+.++|+.|.+.+|.. +.++ ...++|++|++++|.++.+|.. ..+|+.|++++
T Consensus 204 ~~LdLs-~~~LtsLP~~l~~~L~~L~L~~N~L----t~LP----~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVG-ESGLTTLPDCLPAHITTLVIPDNNL----TSLP----ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcC-CCCCCcCCcchhcCCCEEEccCCcC----CCCC----CCCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 455566 5555567776656778888777763 3222 2346788888888887777643 35677788888
Q ss_pred CCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCCCCCChhh
Q 037759 221 PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALHPCCCPED 298 (479)
Q Consensus 221 ~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~~~~~~~ 298 (479)
|.++.+|.. ..+|+.|++++|.+..+|.. .++|++|+++ +|.... | ...+|+. +.+.+ ..+..
T Consensus 272 N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS---~N~L~~Lp~lp~~L~~---L~Ls~--N~L~~ 336 (788)
T PRK15387 272 NPLTHLPAL----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVS---DNQLASLPALPSELCK---LWAYN--NQLTS 336 (788)
T ss_pred Cchhhhhhc----hhhcCEEECcCCcccccccc---ccccceeECC---CCccccCCCCcccccc---ccccc--Ccccc
Confidence 877777752 24567778888877777752 4668888888 765554 4 3323332 22322 11122
Q ss_pred hcCCC-CCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccc
Q 037759 299 ILGRL-PNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPA 377 (479)
Q Consensus 299 ~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~ 377 (479)
+..+ ++|+.|++++|. .. .++. ..++|+.|.++++.+ . .+..+|++|+.|++++|.++..+ .
T Consensus 337 -LP~lp~~Lq~LdLS~N~--Ls-~LP~---lp~~L~~L~Ls~N~L----~----~LP~l~~~L~~LdLs~N~Lt~LP--~ 399 (788)
T PRK15387 337 -LPTLPSGLQELSVSDNQ--LA-SLPT---LPSELYKLWAYNNRL----T----SLPALPSGLKELIVSGNRLTSLP--V 399 (788)
T ss_pred -ccccccccceEecCCCc--cC-CCCC---CCcccceehhhcccc----c----cCcccccccceEEecCCcccCCC--C
Confidence 2222 256666666543 21 1111 112344444433111 0 11122256667777766654211 1
Q ss_pred cccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 378 LEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 378 l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
..++|+.|+++++ .+..+|. .+.+|+.|++.+ ++++.+|..+..+++|+.|++++++
T Consensus 400 ---------------l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ---------------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---------------cccCCCEEEccCC-cCCCCCc---chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 1235666777664 3555542 245688888888 5788899888889999999999887
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=4.7e-15 Score=139.34 Aligned_cols=267 Identities=19% Similarity=0.125 Sum_probs=174.7
Q ss_pred CCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeecCC-CCCcc
Q 037759 148 NLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNI-PSLKS 225 (479)
Q Consensus 148 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~-~~l~~ 225 (479)
+....++|..+.+....+.+..|. +..+++.+|+.+++||.|||+.|.|+.+ |++|..|.+|..|-+.+ |+|+.
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~----I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQ----ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCC----cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 445567888888888899999998 7889999999999999999999999976 89999999988887766 88999
Q ss_pred CChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecCCCCCChhhhcC
Q 037759 226 LPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISALHPCCCPEDILG 301 (479)
Q Consensus 226 lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~~~~~~~~~~l~ 301 (479)
+|.+.|++|..|+.|.+.-|.+..++ +.+..|++|..|.+. .+.... + .+..+..++.+...... ... ..
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsly---Dn~~q~i~~~tf~~l~~i~tlhlA~np--~ic-dC 204 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLY---DNKIQSICKGTFQGLAAIKTLHLAQNP--FIC-DC 204 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhccc---chhhhhhccccccchhccchHhhhcCc--ccc-cc
Confidence 99999999999999999999888887 458999999999999 766555 4 44455555555443211 011 11
Q ss_pred CCCCCC-----------------eEEEEeCCc--cchHHHHHHhccCCCccEE--Eeec----CCCCC--CccEEEeecc
Q 037759 302 RLPNLQ-----------------NIQIWGDLI--YYQSLLSKILYRLSCLESL--KLAK----ESKIP--RRSNIILAKY 354 (479)
Q Consensus 302 ~l~~L~-----------------~L~l~~~~~--~~~~~~~~~l~~l~~L~~L--~l~~----~~~lp--~L~~L~l~~~ 354 (479)
+++.+. -..+....+ .....+... ++.+ .+.. +.+-| ..+
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~------~esl~s~~~~~d~~d~~cP~~cf~------- 271 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS------LESLPSRLSSEDFPDSICPAKCFK------- 271 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh------HHhHHHhhccccCcCCcChHHHHh-------
Confidence 121111 000000000 000001011 1111 0111 11112 233
Q ss_pred cccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEE-cCCCCCCccEeEEecCCCCC
Q 037759 355 QFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTM-GIRAMPKLECSILNPCAHLK 433 (479)
Q Consensus 355 ~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~ 433 (479)
.+ ++|++|++++|.++...-..+.++..+++|.+..+. ++.+.. ....+..|+.|++++ ++++
T Consensus 272 ~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~--------------l~~v~~~~f~~ls~L~tL~L~~-N~it 335 (498)
T KOG4237|consen 272 KL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK--------------LEFVSSGMFQGLSGLKTLSLYD-NQIT 335 (498)
T ss_pred hc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcch--------------HHHHHHHhhhccccceeeeecC-CeeE
Confidence 34 889999999999877766666666555544443332 222211 122456778888888 5666
Q ss_pred CC-cccccCCCCCCEEEeeCC
Q 037759 434 MI-PEQLWCLKSLNKLELWWP 453 (479)
Q Consensus 434 ~l-p~~l~~l~~L~~L~l~~c 453 (479)
.+ |..+..+.+|.+|.+-.+
T Consensus 336 ~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 336 TVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred EEecccccccceeeeeehccC
Confidence 54 556777888888887543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=1e-14 Score=150.34 Aligned_cols=227 Identities=18% Similarity=0.157 Sum_probs=143.0
Q ss_pred CCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCcc
Q 037759 148 NLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKS 225 (479)
Q Consensus 148 ~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~ 225 (479)
+...+.+|..+ -..+..|.+..|.. ...+.++..+.-+|++|++++|.+..+|..+..+.+|+.|+++.|.+..
T Consensus 7 ~~~l~~ip~~i~~~~~~~~ln~~~N~~----l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 7 DEQLELIPEQILNNEALQILNLRRNSL----LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred cccCcccchhhccHHHHHhhhcccccc----ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 44455566665 34466666666653 2233456666666999999999999999999999999999999999999
Q ss_pred CChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecC-------------
Q 037759 226 LPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISAL------------- 290 (479)
Q Consensus 226 lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~------------- 290 (479)
.|.++ +++.+|++|+|.+|.+..+|.++..+.+|++|+++ ++.... | .+..+..+......
T Consensus 83 vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS---~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~i 158 (1081)
T KOG0618|consen 83 VPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS---FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSI 158 (1081)
T ss_pred Cchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc---hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccc
Confidence 99988 99999999999999999999999999999999999 877766 6 54422211111111
Q ss_pred ------C---CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC------CCCccEEEe----
Q 037759 291 ------H---PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK------IPRRSNIIL---- 351 (479)
Q Consensus 291 ------~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------lp~L~~L~l---- 351 (479)
. ...++.+ +..+++ .|+++.+. .. ...+..+.+|+.+....+.. -|+++.|..
T Consensus 159 k~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~--~~---~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 159 KKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNE--ME---VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhhhcccchhcc-hhhhhe--eeecccch--hh---hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCc
Confidence 1 1123333 444444 46776554 33 22333444444444333110 044454444
Q ss_pred ----ecccccCcceEEEEecccCCCCCccccccCccCceEEecc
Q 037759 352 ----AKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS 391 (479)
Q Consensus 352 ----~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~ 391 (479)
.....|.+|++++++.+.++..+ ..++.+++|+.+....
T Consensus 231 l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 231 LTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANH 273 (1081)
T ss_pred ceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccc
Confidence 11223467777777777665444 4455555555554443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=3.7e-13 Score=142.98 Aligned_cols=242 Identities=16% Similarity=0.159 Sum_probs=138.7
Q ss_pred CeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeec
Q 037759 139 NVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNL 218 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L 218 (479)
+...+.+. +.....+|..+.++++.|.+.+|. +..++...+ .+|++|++++|.++.+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~----LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLK-ILGLTTIPACIPEQITTLILDNNE----LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeC-CCCcCcCCcccccCCcEEEecCCC----CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 34566666 555556666666678888887776 344443332 467888888888777776554 36788888
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCCCCCCh
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALHPCCCP 296 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~~~~~ 296 (479)
++|.+..+|..+ . .+|+.|++++|++..+|..+. ++|++|+++ +|.... | .+.
T Consensus 249 s~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls---~N~Lt~LP~~lp----------------- 303 (754)
T PRK15370 249 SINRITELPERL-P--SALQSLDLFHNKISCLPENLP--EELRYLSVY---DNSIRTLPAHLP----------------- 303 (754)
T ss_pred cCCccCcCChhH-h--CCCCEEECcCCccCccccccC--CCCcEEECC---CCccccCcccch-----------------
Confidence 888888887766 3 467888888777777776553 467888888 665444 4 332
Q ss_pred hhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCcc
Q 037759 297 EDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMP 376 (479)
Q Consensus 297 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~ 376 (479)
++|+.|++++|. .. .++..+ .++|+.|.+.++.+ ..+ -..+|++|+.|++++|.+...+.
T Consensus 304 -------~sL~~L~Ls~N~--Lt-~LP~~l--~~sL~~L~Ls~N~L----t~L---P~~l~~sL~~L~Ls~N~L~~LP~- 363 (754)
T PRK15370 304 -------SGITHLNVQSNS--LT-ALPETL--PPGLKTLEAGENAL----TSL---PASLPPELQVLDVSKNQITVLPE- 363 (754)
T ss_pred -------hhHHHHHhcCCc--cc-cCCccc--cccceeccccCCcc----ccC---ChhhcCcccEEECCCCCCCcCCh-
Confidence 123334444332 11 111111 13444444433111 000 00123677777777776542111
Q ss_pred ccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCccccc----CCCCCCEEEeeC
Q 037759 377 ALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLW----CLKSLNKLELWW 452 (479)
Q Consensus 377 ~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~ 452 (479)
...++|+.|++.++ .+..+|.. ..+.|+.|++.+ ++++.+|..+. .++++..+++.+
T Consensus 364 ---------------~lp~~L~~LdLs~N-~Lt~LP~~--l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 364 ---------------TLPPTITTLDVSRN-ALTNLPEN--LPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred ---------------hhcCCcCEEECCCC-cCCCCCHh--HHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeC
Confidence 01235666666654 34444432 124677788887 46777765443 346777888887
Q ss_pred Cc
Q 037759 453 PE 454 (479)
Q Consensus 453 c~ 454 (479)
+|
T Consensus 425 Np 426 (754)
T PRK15370 425 NP 426 (754)
T ss_pred CC
Confidence 77
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-15 Score=126.69 Aligned_cols=152 Identities=25% Similarity=0.329 Sum_probs=125.4
Q ss_pred ccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHh
Q 037759 154 FLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLN 232 (479)
Q Consensus 154 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~ 232 (479)
++.-+ ++++..|.+++|.. + +.+.-+..+.+|++|++.+|+++++|.++++++.||.|++.-|++..+|.++ +
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl----~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-g 99 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKL----T-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-G 99 (264)
T ss_pred cccccchhhhhhhhcccCce----e-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-C
Confidence 45555 78888888888873 3 3345678889999999999999999999999999999999999999999988 9
Q ss_pred cCcCCcEEecCCCc--ccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCC--CCCChhhhcCCCCCC
Q 037759 233 SLLNLYTLDMPFSY--IDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALH--PCCCPEDILGRLPNL 306 (479)
Q Consensus 233 ~l~~L~~L~l~~~~--l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L 306 (479)
.++.|++||+..|+ -..+|..|..|+.|+.|+++ .+...- | +++.|++|+.+.... .-..+.+ ++.++.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~---dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~l 175 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG---DNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRL 175 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhc---CCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHH
Confidence 99999999999884 45688889999999999999 776666 7 999889888887765 3346778 8999999
Q ss_pred CeEEEEeCC
Q 037759 307 QNIQIWGDL 315 (479)
Q Consensus 307 ~~L~l~~~~ 315 (479)
+.|.|.++.
T Consensus 176 relhiqgnr 184 (264)
T KOG0617|consen 176 RELHIQGNR 184 (264)
T ss_pred HHHhcccce
Confidence 999999764
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=3.3e-12 Score=137.85 Aligned_cols=243 Identities=23% Similarity=0.177 Sum_probs=157.5
Q ss_pred ccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc--CccCchh-hcccccCCeeecCCCC-CccCCh
Q 037759 154 FLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV--LIRYPSE-IEYVFLLRYLNLNIPS-LKSLPS 228 (479)
Q Consensus 154 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--l~~lp~~-l~~L~~L~~L~L~~~~-l~~lp~ 228 (479)
.|... ....|...+.++... .+ ..-...+.|++|-+.+|. +..++.. |..++.|++||+++|. +.++|.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~----~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIE----HI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccccchhheeEEEEeccchh----hc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 55555 788888888888743 11 112334479999999996 6666654 7779999999999875 889999
Q ss_pred hHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCC-CCcccCeeecCC-----CCCChhhhc
Q 037759 229 SLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCG-SLENLDFISALH-----PCCCPEDIL 300 (479)
Q Consensus 229 ~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~-~L~~L~~l~~~~-----~~~~~~~~l 300 (479)
++ ++|.+|++|+++++.+..+|.++++|.+|.+|++. .+.... + ++. .|++|+.+.+.. ......+ +
T Consensus 590 ~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~---~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l 664 (889)
T KOG4658|consen 590 SI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE---VTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-L 664 (889)
T ss_pred HH-hhhhhhhcccccCCCccccchHHHHHHhhheeccc---cccccccccchhhhcccccEEEeeccccccchhhHHh-h
Confidence 99 99999999999999999999999999999999999 766555 3 444 577777776654 2344556 7
Q ss_pred CCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecC-CCCCCccEEEeecccccCcceEEEEecccCCCCCccccc
Q 037759 301 GRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKE-SKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALE 379 (479)
Q Consensus 301 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~ 379 (479)
..+.+|+.+.+...+ . .+...+..+.+|.++...-. .. ...+.+...+..+ ++|+.|.+.+|.+.+..+....
T Consensus 665 ~~Le~L~~ls~~~~s--~--~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~~ 738 (889)
T KOG4658|consen 665 ENLEHLENLSITISS--V--LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSL-GNLEELSILDCGISEIVIEWEE 738 (889)
T ss_pred hcccchhhheeecch--h--HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccc-cCcceEEEEcCCCchhhccccc
Confidence 778888888776433 2 22233333333332221110 00 0111111133455 8899999999987554432211
Q ss_pred c------CccCceEEecc----------CCCCCcceEeeccCCCCCeeEE
Q 037759 380 K------LAVLRKLACSS----------DGFPKLKVLHLKSMLWLQEWTM 413 (479)
Q Consensus 380 ~------l~~L~~l~~~~----------~~~~~L~~L~l~~~~~l~~~~~ 413 (479)
. ++++....+.. .-.|+|+.|.+..|..++++..
T Consensus 739 ~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 739 SLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 1 22222111100 2257788888888776666533
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=1.3e-12 Score=123.18 Aligned_cols=241 Identities=16% Similarity=0.092 Sum_probs=177.7
Q ss_pred CCCCeEEEEEEcCCCCccccccc---CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecC-CcCccCch-hhccc
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF---DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGS-LVLIRYPS-EIEYV 210 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp~-~l~~L 210 (479)
.+.....+.+. .+.+..+|+.. .++||.|+++.|. +..+.+++|.+++.|..|-+.+ |+|+++|+ .|+.|
T Consensus 65 LP~~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N~----Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKNN----ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEec-cCCcccCChhhccchhhhceecccccc----hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 46677888888 77777787765 8999999999999 6778899999999988887766 88999985 58899
Q ss_pred ccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC--------------
Q 037759 211 FLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG-------------- 275 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~-------------- 275 (479)
..|+-|.+.-|.+..++...|..+++|..|.+.+|.++.++. .+..+..++++.+. .+...-
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA---~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA---QNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh---cCccccccccchhhhHHhhc
Confidence 999999999999999998888999999999999999999987 58899999988877 444110
Q ss_pred C-CCCCCcc-----c-----------------Cee---ecCC----CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHH
Q 037759 276 K-YCGSLEN-----L-----------------DFI---SALH----PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKI 325 (479)
Q Consensus 276 p-~i~~L~~-----L-----------------~~l---~~~~----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 325 (479)
| ..+..+. + +.+ ..+. ....... +..+++|++|++++|. ....-..+
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c-f~~L~~L~~lnlsnN~--i~~i~~~a 293 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC-FKKLPNLRKLNLSNNK--ITRIEDGA 293 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH-HhhcccceEeccCCCc--cchhhhhh
Confidence 1 1110000 0 000 0000 0111233 7788999999999887 77777888
Q ss_pred hccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEecc
Q 037759 326 LYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS 391 (479)
Q Consensus 326 l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~ 391 (479)
|.+..++++|.+..+.+- ..+.- .+..+ .+|+.|++.+|+|+......+..+.+|.++.+-.
T Consensus 294 Fe~~a~l~eL~L~~N~l~-~v~~~--~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLE-FVSSG--MFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hcchhhhhhhhcCcchHH-HHHHH--hhhcc-ccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 888888998888762210 00000 12344 8889999999999888877888888877666543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=3e-11 Score=128.50 Aligned_cols=200 Identities=16% Similarity=0.172 Sum_probs=139.1
Q ss_pred CCCeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCee
Q 037759 137 WENVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYL 216 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L 216 (479)
+..++.+.+. ++.+..+|..+.++|+.|.+.+|. +..++.. + ..+|+.|++++|.+..+|..+. .+|++|
T Consensus 198 p~~L~~L~Ls-~N~LtsLP~~l~~nL~~L~Ls~N~----LtsLP~~-l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 198 PEQITTLILD-NNELKSLPENLQGNIKTLYANSNQ----LTSIPAT-L--PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred ccCCcEEEec-CCCCCcCChhhccCCCEEECCCCc----cccCChh-h--hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 4568899999 777777888777899999999987 4444332 2 2479999999999999998775 489999
Q ss_pred ecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCCCC-
Q 037759 217 NLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALHPC- 293 (479)
Q Consensus 217 ~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~~- 293 (479)
++++|.++.+|..+ . .+|+.|++++|++..+|..+. ++|++|+++ +|.... | .+. ..|+.+.+.++.
T Consensus 268 ~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls---~N~Lt~LP~~l~--~sL~~L~Ls~N~L 337 (754)
T PRK15370 268 DLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQ---SNSLTALPETLP--PGLKTLEAGENAL 337 (754)
T ss_pred ECcCCccCcccccc-C--CCCcEEECCCCccccCcccch--hhHHHHHhc---CCccccCCcccc--ccceeccccCCcc
Confidence 99999999999877 3 589999999999999987654 478999999 887666 6 443 234444444311
Q ss_pred -CChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCC
Q 037759 294 -CCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELM 371 (479)
Q Consensus 294 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~ 371 (479)
..+.. + .++|+.|++++|. .. .++..+ .++|++|+++++.+. .+ -..+|.+|+.|++++|.+.
T Consensus 338 t~LP~~-l--~~sL~~L~Ls~N~--L~-~LP~~l--p~~L~~LdLs~N~Lt----~L---P~~l~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 338 TSLPAS-L--PPELQVLDVSKNQ--IT-VLPETL--PPTITTLDVSRNALT----NL---PENLPAALQIMQASRNNLV 401 (754)
T ss_pred ccCChh-h--cCcccEEECCCCC--CC-cCChhh--cCCcCEEECCCCcCC----CC---CHhHHHHHHHHhhccCCcc
Confidence 12222 2 2578888888765 32 233333 257777777663221 10 0112256777888888765
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.19 E-value=7.5e-11 Score=124.95 Aligned_cols=233 Identities=15% Similarity=0.010 Sum_probs=151.2
Q ss_pred CCeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeee
Q 037759 138 ENVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLN 217 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~ 217 (479)
..++.|.+. ++....+|. ..++|++|.+.+|.. ..++ ...++|+.|++++|.+..+|... .+|+.|+
T Consensus 222 ~~L~~L~L~-~N~Lt~LP~-lp~~Lk~LdLs~N~L----tsLP----~lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQL----TSLP----VLPPGLLELSIFSNPLTHLPALP---SGLCKLW 288 (788)
T ss_pred cCCCEEEcc-CCcCCCCCC-CCCCCcEEEecCCcc----Cccc----CcccccceeeccCCchhhhhhch---hhcCEEE
Confidence 357889988 677666664 378999999999973 3332 12468999999999988887643 5688899
Q ss_pred cCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCCCCCCh
Q 037759 218 LNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALHPCCCP 296 (479)
Q Consensus 218 L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~ 296 (479)
+++|.++.+|. .+++|+.|++++|.+..+|... .+|+.|+++ +|.... |.+. ..|+.++++++ .+
T Consensus 289 Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls---~N~L~~LP~lp--~~Lq~LdLS~N--~L 354 (788)
T PRK15387 289 IFGNQLTSLPV----LPPGLQELSVSDNQLASLPALP---SELCKLWAY---NNQLTSLPTLP--SGLQELSVSDN--QL 354 (788)
T ss_pred CcCCccccccc----cccccceeECCCCccccCCCCc---ccccccccc---cCccccccccc--cccceEecCCC--cc
Confidence 99999999885 3478999999999888887632 357778888 776665 5211 34556666551 11
Q ss_pred hhhcCC-CCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCc
Q 037759 297 EDILGR-LPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPM 375 (479)
Q Consensus 297 ~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~ 375 (479)
.. +.. .++|+.|++.+|. .. .++.. ..+|+.|+++++.+- .+...|++|+.|++++|.+...
T Consensus 355 s~-LP~lp~~L~~L~Ls~N~--L~-~LP~l---~~~L~~LdLs~N~Lt--------~LP~l~s~L~~LdLS~N~LssI-- 417 (788)
T PRK15387 355 AS-LPTLPSELYKLWAYNNR--LT-SLPAL---PSGLKELIVSGNRLT--------SLPVLPSELKELMVSGNRLTSL-- 417 (788)
T ss_pred CC-CCCCCcccceehhhccc--cc-cCccc---ccccceEEecCCccc--------CCCCcccCCCEEEccCCcCCCC--
Confidence 12 211 2467777777664 32 23321 346788888763221 1112236788889988886432
Q ss_pred cccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCC
Q 037759 376 PALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCA 430 (479)
Q Consensus 376 ~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 430 (479)
|.+ +.+|+.|++.++ ++..+|...+.+++|+.|++.+++
T Consensus 418 ------P~l---------~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 418 ------PML---------PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ------Ccc---------hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 211 234555666553 456666656677888888888854
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=4.9e-11 Score=116.42 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=48.4
Q ss_pred HHHhCcCCceeEEEecCCcCc-----cCchhhcccccCCeeecCCCCCcc-------CChhHHhcCcCCcEEecCCCccc
Q 037759 181 EKIYKMFKFLRVLDLGSLVLI-----RYPSEIEYVFLLRYLNLNIPSLKS-------LPSSLLNSLLNLYTLDMPFSYID 248 (479)
Q Consensus 181 ~~~~~~l~~L~~L~L~~~~l~-----~lp~~l~~L~~L~~L~L~~~~l~~-------lp~~i~~~l~~L~~L~l~~~~l~ 248 (479)
...|..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+ .++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCC
Confidence 355556666777777776653 344455556666667666655442 22233 55667777777766544
Q ss_pred -ccchhhhcCcc---CcEEEec
Q 037759 249 -HTADEFWKMSK---LRYLNFG 266 (479)
Q Consensus 249 -~lp~~~~~L~~---L~~L~l~ 266 (479)
..+..+..+.+ |++|+++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls 116 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLN 116 (319)
T ss_pred hhHHHHHHHHhccCcccEEEee
Confidence 23333444444 6777766
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=4.1e-10 Score=109.89 Aligned_cols=107 Identities=21% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCCccEEEEecCCCCC--CCcchhHHHhCcCCceeEEEecCCcCc-cCchhhccccc---CCeeecCCCCCc-----cCC
Q 037759 159 DSFLHSLLHLTLGSHY--LDSNYCEKIYKMFKFLRVLDLGSLVLI-RYPSEIEYVFL---LRYLNLNIPSLK-----SLP 227 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~--~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~l~~L~~---L~~L~L~~~~l~-----~lp 227 (479)
.+.++.+.+.++.... .........+..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+. .+.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 4445555555544210 001122344555666666666666654 23333443333 666666666554 122
Q ss_pred hhHHhcC-cCCcEEecCCCccc-----ccchhhhcCccCcEEEec
Q 037759 228 SSLLNSL-LNLYTLDMPFSYID-----HTADEFWKMSKLRYLNFG 266 (479)
Q Consensus 228 ~~i~~~l-~~L~~L~l~~~~l~-----~lp~~~~~L~~L~~L~l~ 266 (479)
..+ ..+ ++|+.|++++|.+. .++..+..+++|++|+++
T Consensus 130 ~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 130 KGL-KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred HHH-HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 233 444 56666666666444 233344555566666666
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.6e-09 Score=94.62 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=41.6
Q ss_pred ccccccc-CCCccEEEEecCCCCCCCcchhHHHhC-cCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChh
Q 037759 152 FEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYK-MFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSS 229 (479)
Q Consensus 152 ~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~ 229 (479)
+..+... +.++|.|.+.++... .+ +.+. .+.+|++|++++|.++.++ .+..+++|+.|++++|.|+.+++.
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~----~I--e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQIS----TI--ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccccccc----cc--cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 3344444 567788888888742 21 2233 5678899999999988774 577888999999999999988766
Q ss_pred HHhcCcCCcEEecCCCcccccc--hhhhcCccCcEEEeccCCCCCCCC
Q 037759 230 LLNSLLNLYTLDMPFSYIDHTA--DEFWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 230 i~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
+...+++|++|++++|++..+. ..+..+++|++|++. +|....
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~---~NPv~~ 127 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE---GNPVCE 127 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T---T-GGGG
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc---CCcccc
Confidence 5346889999999998666654 347788889999998 776554
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=3.7e-09 Score=92.28 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=49.4
Q ss_pred hCcCCceeEEEecCCcCccCchhhc-ccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhh-hcCccCc
Q 037759 184 YKMFKFLRVLDLGSLVLIRYPSEIE-YVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEF-WKMSKLR 261 (479)
Q Consensus 184 ~~~l~~L~~L~L~~~~l~~lp~~l~-~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~-~~L~~L~ 261 (479)
+.+..+++.|+|++|.|+.+. .++ .+.+|+.|++++|.|+.++ ++ ..+++|++|++++|.+..+++.+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 445567899999999998763 565 5889999999999999996 56 89999999999999999997766 4799999
Q ss_pred EEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCcc-chHHHHHHhccCCCccEEEe
Q 037759 262 YLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIY-YQSLLSKILYRLSCLESLKL 337 (479)
Q Consensus 262 ~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~L~~L~l 337 (479)
+|+++ +|.... + ..+.. +..+++|+.|++.+|++. ....-...+..+|+|+.|+-
T Consensus 92 ~L~L~---~N~I~~--------l---------~~l~~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLS---NNKISD--------L---------NELEP-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-T---TS---S--------C---------CCCGG-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECc---CCcCCC--------h---------HHhHH-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 99999 765321 1 22334 677888888888876621 11122334556677776654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=3.8e-10 Score=111.31 Aligned_cols=148 Identities=22% Similarity=0.211 Sum_probs=79.2
Q ss_pred HHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCc
Q 037759 182 KIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLR 261 (479)
Q Consensus 182 ~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~ 261 (479)
..+..+..|..+.++.|.+..+|..+++|..|.||+|+.|.+..+|..+ +.|+ |+.|.+++|+++.+|..++.+..|.
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPTLA 169 (722)
T ss_pred hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchhHH
Confidence 3344444455555555555555555555555555555555555555555 4443 4555555555555555555555555
Q ss_pred EEEeccCCCCCCCC-C-CCCCCcccCeeecCC--CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEe
Q 037759 262 YLNFGSITLSAHPG-K-YCGSLENLDFISALH--PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKL 337 (479)
Q Consensus 262 ~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 337 (479)
+|+.+ .|.... | .++.+..|..+.+.. -...+.+ +..|+ |.+|+++.| ....++-.|..|++|++|.+
T Consensus 170 ~ld~s---~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 170 HLDVS---KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred Hhhhh---hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCc-eeeeecccC---ceeecchhhhhhhhheeeee
Confidence 55555 444444 4 444444444444332 2234555 55443 566666654 44555666677777777777
Q ss_pred ec
Q 037759 338 AK 339 (479)
Q Consensus 338 ~~ 339 (479)
.+
T Consensus 242 en 243 (722)
T KOG0532|consen 242 EN 243 (722)
T ss_pred cc
Confidence 65
No 28
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.69 E-value=6e-09 Score=100.14 Aligned_cols=53 Identities=34% Similarity=0.529 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHhccCCchhhHHHHhhhcccCCCceechhhHHHHHHhcCCCCC
Q 037759 20 ALDEPRGLQVVAYCMLPFYLKLCCLYLSVFLVHFEISTKQSYQLWIAEGFIPN 72 (479)
Q Consensus 20 ~~~~i~~~L~lSY~~L~~~~K~cfl~~a~fp~~~~i~~~~Li~~w~a~g~i~~ 72 (479)
....++.++.+||+.||++.|.||+|||+||+++.|+++.|+++|+|+|||..
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 46789999999999999999999999999999999999999999999999963
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.3e-08 Score=72.93 Aligned_cols=58 Identities=29% Similarity=0.351 Sum_probs=32.0
Q ss_pred ceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCc
Q 037759 189 FLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSY 246 (479)
Q Consensus 189 ~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~ 246 (479)
+|++|++++|.+..+| ..|..+++|++|++++|.++.+|+..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555554 344555555555555555555555444555555555555553
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=5.1e-09 Score=99.96 Aligned_cols=283 Identities=17% Similarity=0.088 Sum_probs=158.8
Q ss_pred CCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-Ccc-Cchhh-cccccCCeeecCCCC-CccCC-hhHHhcC
Q 037759 160 SFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIR-YPSEI-EYVFLLRYLNLNIPS-LKSLP-SSLLNSL 234 (479)
Q Consensus 160 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~-lp~~l-~~L~~L~~L~L~~~~-l~~lp-~~i~~~l 234 (479)
..||.|.+.|+... -......+..+++++..|.+.++. ++. .-.++ ..+++|++|++..|. ++..- ..+-..+
T Consensus 138 g~lk~LSlrG~r~v--~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAV--GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccC--CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 45666777776653 233445566777777777777775 331 11122 246677777777743 44221 2222567
Q ss_pred cCCcEEecCCC-cccc--cchhhhcCccCcEEEeccCCCCCCCC-C---CCC-CCcccCeee---cCC-CCCChhhhcCC
Q 037759 235 LNLYTLDMPFS-YIDH--TADEFWKMSKLRYLNFGSITLSAHPG-K---YCG-SLENLDFIS---ALH-PCCCPEDILGR 302 (479)
Q Consensus 235 ~~L~~L~l~~~-~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~~-p---~i~-~L~~L~~l~---~~~-~~~~~~~~l~~ 302 (479)
++|++|++++| .+.. +..-..+...++.+... ||.... . .+. ....+-.++ +.. +......+-..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k---GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK---GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhc---ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 88888888887 4433 32334445556666666 665443 1 111 111111111 111 00111110234
Q ss_pred CCCCCeEEEEeCCccchHHHHHH-hccCCCccEEEeecCCCCC--CccEEEeecc-cccCcceEEEEecccCCCCCcccc
Q 037759 303 LPNLQNIQIWGDLIYYQSLLSKI-LYRLSCLESLKLAKESKIP--RRSNIILAKY-QFPPSLTHLSFLNIELMDDPMPAL 378 (479)
Q Consensus 303 l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~lp--~L~~L~l~~~-~lp~~L~~L~l~~~~l~~~~~~~l 378 (479)
+..|+.|+.+++.. ..+..... -+...+|+.|.+....-|. .++. ++ .. +.|+.+++..|....+. .+
T Consensus 293 c~~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~----l~rn~-~~Le~l~~e~~~~~~d~--tL 364 (483)
T KOG4341|consen 293 CHALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM----LGRNC-PHLERLDLEECGLITDG--TL 364 (483)
T ss_pred hhHhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhhhhh----hhcCC-hhhhhhcccccceehhh--hH
Confidence 56677777775441 22333333 3456777777776521110 1110 11 22 67777777777643222 12
Q ss_pred ccCccCceEEeccCCCCCcceEeeccCCCCCee-----EEcCCCCCCccEeEEecCCCCCC-CcccccCCCCCCEEEeeC
Q 037759 379 EKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEW-----TMGIRAMPKLECSILNPCAHLKM-IPEQLWCLKSLNKLELWW 452 (479)
Q Consensus 379 ~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~ 452 (479)
..+ ....+.|+.|.++.|....+- .....++..|+.+++.+|+.+++ .-..+...++|+.+++.+
T Consensus 365 ~sl---------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 365 ASL---------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhh---------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 222 245788999999888655443 23335688999999999998864 335677889999999999
Q ss_pred CcHHHHHHhhhc
Q 037759 453 PELELRQQLREF 464 (479)
Q Consensus 453 c~~~~~~~~~~~ 464 (479)
|.....+.++.+
T Consensus 436 ~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 436 CQDVTKEAISRF 447 (483)
T ss_pred hhhhhhhhhHHH
Confidence 999998888885
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=3.9e-08 Score=99.09 Aligned_cols=172 Identities=23% Similarity=0.247 Sum_probs=100.8
Q ss_pred hCcCCceeEEEecCCcCccCchhhcccc-cCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcE
Q 037759 184 YKMFKFLRVLDLGSLVLIRYPSEIEYVF-LLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRY 262 (479)
Q Consensus 184 ~~~l~~L~~L~L~~~~l~~lp~~l~~L~-~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~ 262 (479)
...++.++.|++.++.++++|.....+. +|+.|++++|.+..+|..+ +.+++|+.|++++|.+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3444667777777777776666666664 6777777777777776666 6777777777777777777665556667777
Q ss_pred EEeccCCCCCCCC-C-CCCCCcccCeeecCCC--CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEee
Q 037759 263 LNFGSITLSAHPG-K-YCGSLENLDFISALHP--CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLA 338 (479)
Q Consensus 263 L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 338 (479)
|+++ ++.... | .+..+..|+.+.+.+. ...+.. +..++++..+.+.++. ....+..++.+++++.|+++
T Consensus 191 L~ls---~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~~~l~~l~l~~n~---~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 191 LDLS---GNKISDLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred eecc---CCccccCchhhhhhhhhhhhhhcCCcceecchh-hhhcccccccccCCce---eeeccchhccccccceeccc
Confidence 7777 666555 5 4444444555555442 123333 5555666655544432 12224555666667777766
Q ss_pred cCCCC--CCccEEEeecccccCcceEEEEecccCC
Q 037759 339 KESKI--PRRSNIILAKYQFPPSLTHLSFLNIELM 371 (479)
Q Consensus 339 ~~~~l--p~L~~L~l~~~~lp~~L~~L~l~~~~l~ 371 (479)
+..+. +.+. .+ .+++.|+++++.+.
T Consensus 264 ~n~i~~i~~~~-------~~-~~l~~L~~s~n~~~ 290 (394)
T COG4886 264 NNQISSISSLG-------SL-TNLRELDLSGNSLS 290 (394)
T ss_pred ccccccccccc-------cc-CccCEEeccCcccc
Confidence 52211 1222 22 66777777776653
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=5.2e-08 Score=98.14 Aligned_cols=167 Identities=26% Similarity=0.271 Sum_probs=123.0
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCC-ceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFK-FLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNL 237 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L 237 (479)
.+.+..|.+.++... .+ +.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.++|... +.+++|
T Consensus 115 ~~~l~~L~l~~n~i~----~i-~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L 188 (394)
T COG4886 115 LTNLTSLDLDNNNIT----DI-PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNL 188 (394)
T ss_pred ccceeEEecCCcccc----cC-ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhh
Confidence 567888888887743 22 23344453 899999999999888888889999999999999999998877 788899
Q ss_pred cEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCCCC--CChhhhcCCCCCCCeEEEEe
Q 037759 238 YTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALHPC--CCPEDILGRLPNLQNIQIWG 313 (479)
Q Consensus 238 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~ 313 (479)
+.|++++|.+..+|..+..+..|+.|.++ ++.... + .+..+..+..+.+.+.. ..+.. ++.+++++.|++++
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~---~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~ 264 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLS---NNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSN 264 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhc---CCcceecchhhhhcccccccccCCceeeeccch-hccccccceecccc
Confidence 99999999999998877777778899888 775555 5 56655666555544311 11344 77888888888887
Q ss_pred CCccchHHHHHHhccCCCccEEEeec
Q 037759 314 DLIYYQSLLSKILYRLSCLESLKLAK 339 (479)
Q Consensus 314 ~~~~~~~~~~~~l~~l~~L~~L~l~~ 339 (479)
+. ...... +..+.+++.|++++
T Consensus 265 n~--i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 265 NQ--ISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred cc--cccccc--ccccCccCEEeccC
Confidence 64 222222 77778888888876
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=1.9e-08 Score=94.15 Aligned_cols=236 Identities=19% Similarity=0.148 Sum_probs=122.3
Q ss_pred hhHHHhCcCCceeEEEecCCcCc-----cCchhhcccccCCeeecCCC--C--CccCChhH------HhcCcCCcEEecC
Q 037759 179 YCEKIYKMFKFLRVLDLGSLVLI-----RYPSEIEYVFLLRYLNLNIP--S--LKSLPSSL------LNSLLNLYTLDMP 243 (479)
Q Consensus 179 ~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~l~~L~~L~~L~L~~~--~--l~~lp~~i------~~~l~~L~~L~l~ 243 (479)
...+....+..+..++|++|.+. .+-..+.+.++|+.-++++- . ..++|+.+ +..+++|++|||+
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 34456677888888888888876 23455667778888888762 2 33566543 1456789999999
Q ss_pred CCcc--cccc---hhhhcCccCcEEEeccCCCCCCCC-C--CCC-------------CCcccCeeecCCCC------CCh
Q 037759 244 FSYI--DHTA---DEFWKMSKLRYLNFGSITLSAHPG-K--YCG-------------SLENLDFISALHPC------CCP 296 (479)
Q Consensus 244 ~~~l--~~lp---~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~-------------~L~~L~~l~~~~~~------~~~ 296 (479)
+|-+ ..++ .-+.+...|++|++. +|-.-. . .++ +-..|+.+.+.++. ..+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~---N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLN---NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhh---cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 9832 2332 446778889999888 664332 1 222 33345555554311 111
Q ss_pred hhhcCCCCCCCeEEEEeCCcc--chHHHHHHhccCCCccEEEeecCCCC----CCccEEEeecccccCcceEEEEecccC
Q 037759 297 EDILGRLPNLQNIQIWGDLIY--YQSLLSKILYRLSCLESLKLAKESKI----PRRSNIILAKYQFPPSLTHLSFLNIEL 370 (479)
Q Consensus 297 ~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~l----p~L~~L~l~~~~lp~~L~~L~l~~~~l 370 (479)
..++...+.|+.+.+..+.+. ....+...+..+++|+.|++.++.+- ..|-+ .+..+ ++|+.|.+++|.+
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak---aL~s~-~~L~El~l~dcll 253 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK---ALSSW-PHLRELNLGDCLL 253 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH---Hhccc-chheeeccccccc
Confidence 122445556666666532210 11233445555666666666542111 00000 12233 5666666666665
Q ss_pred CCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCe----eEEcCCCCCCccEeEEecC
Q 037759 371 MDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQE----WTMGIRAMPKLECSILNPC 429 (479)
Q Consensus 371 ~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~c 429 (479)
.......+..-- ...+|+|+.|.+.++.--.+ +.......|.|++|++++|
T Consensus 254 ~~~Ga~a~~~al--------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 254 ENEGAIAFVDAL--------KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccHHHHHHHH--------hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 544333222100 12356666666555321000 0111223566667777664
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.1e-08 Score=95.21 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=94.4
Q ss_pred cccccCCeeecCCCCCccCCh--hHHhcCcCCcEEecCCC---cccccchhhhcCccCcEEEeccCCCCCCCCC--C-CC
Q 037759 208 EYVFLLRYLNLNIPSLKSLPS--SLLNSLLNLYTLDMPFS---YIDHTADEFWKMSKLRYLNFGSITLSAHPGK--Y-CG 279 (479)
Q Consensus 208 ~~L~~L~~L~L~~~~l~~lp~--~i~~~l~~L~~L~l~~~---~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p--~-i~ 279 (479)
.++++|+...|+++++...+. .. ..|++++.||+++| ++..+-.-...|++|+.|+++ .|....| . ..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls---~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS---SNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc---cccccCCccccch
Confidence 456667777777766665553 34 66777777777776 333333445667777777777 5443221 0 00
Q ss_pred -CCcccCeeecCCCCCCh---hhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC--CCccEEEeec
Q 037759 280 -SLENLDFISALHPCCCP---EDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI--PRRSNIILAK 353 (479)
Q Consensus 280 -~L~~L~~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l--p~L~~L~l~~ 353 (479)
.+..|+.+.+...+... ...+..+|+|+.|.+..|+ ..........-+..|++|+++++.++ +.+. .+
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~----~~ 267 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSNNNLIDFDQGY----KV 267 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccCCccccccccc----cc
Confidence 22222222222211111 1113344555555555432 11111112222344555555442221 1000 12
Q ss_pred ccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEc--CCCCCCccEeEEec
Q 037759 354 YQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMG--IRAMPKLECSILNP 428 (479)
Q Consensus 354 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~ 428 (479)
+.| |.|+.|.++.|.+.....+..+.+.. ...||+|+.|.+... ++.+|+.- ...+++|+.|.+..
T Consensus 268 ~~l-~~L~~Lnls~tgi~si~~~d~~s~~k-------t~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 268 GTL-PGLNQLNLSSTGIASIAEPDVESLDK-------THTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccc-cchhhhhccccCcchhcCCCccchhh-------hcccccceeeecccC-ccccccccchhhccchhhhhhccc
Confidence 334 66666666666554443333221111 134777777777653 34455421 23456667666654
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=4.8e-08 Score=70.00 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=54.3
Q ss_pred ccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCC
Q 037759 211 FLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSA 272 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~ 272 (479)
++|++|++++|.++.+|++.|.++++|++|++++|.+..+|. .|..+++|++|+++ +|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~---~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS---NNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET---SSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc---CCc
Confidence 478999999999999998888999999999999999999985 58999999999999 764
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=1.8e-08 Score=92.31 Aligned_cols=125 Identities=21% Similarity=0.263 Sum_probs=58.9
Q ss_pred CceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEecc
Q 037759 188 KFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGS 267 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~ 267 (479)
+.|..|||++|.|+.+-.++.-++.+|.|++++|++..+.. + ..|++|+.||+++|.+.++...=.+|-+.+.|.+.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-L-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La- 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-L-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA- 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-h-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh-
Confidence 34455555555555554444445555555555555554432 3 45555555555555444443323344444444444
Q ss_pred CCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeec
Q 037759 268 ITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAK 339 (479)
Q Consensus 268 ~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 339 (479)
++.. ..+.. ++.+-+|..|++++|++ ..-.-...+++++.|+.+.+.+
T Consensus 361 --~N~i--------------------E~LSG-L~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 361 --QNKI--------------------ETLSG-LRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred --hhhH--------------------hhhhh-hHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcC
Confidence 3221 12222 44555555566654431 1222334455566666555544
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=5.4e-09 Score=103.36 Aligned_cols=166 Identities=20% Similarity=0.132 Sum_probs=125.2
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCC
Q 037759 137 WENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLR 214 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~ 214 (479)
......+.+. .+...++|+.. +-.|.++.+..|... .++..+.++..|.+|||+.|++..+|..++.| -|+
T Consensus 74 ltdt~~aDls-rNR~~elp~~~~~f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLk 146 (722)
T KOG0532|consen 74 LTDTVFADLS-RNRFSELPEEACAFVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLK 146 (722)
T ss_pred ccchhhhhcc-ccccccCchHHHHHHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cce
Confidence 3444555666 66666677777 888888888877643 35677888888999999999988888888876 478
Q ss_pred eeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCC-
Q 037759 215 YLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALH- 291 (479)
Q Consensus 215 ~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~- 291 (479)
.|-+++|.++.+|+.+ +.+..|..||.+.|.+..+|..++.+.+|+.|.+. .+.... | .+..|. |..++++.
T Consensus 147 vli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr---Rn~l~~lp~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR---RNHLEDLPEELCSLP-LIRLDFSCN 221 (722)
T ss_pred eEEEecCccccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh---hhhhhhCCHHHhCCc-eeeeecccC
Confidence 8888888899999888 88888888999888888888888888888888888 777776 6 655322 22333332
Q ss_pred -CCCChhhhcCCCCCCCeEEEEeCC
Q 037759 292 -PCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 292 -~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
-...+.. +.+|++|+.|.+.+|.
T Consensus 222 kis~iPv~-fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 222 KISYLPVD-FRKMRHLQVLQLENNP 245 (722)
T ss_pred ceeecchh-hhhhhhheeeeeccCC
Confidence 2334556 7888888888888765
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=2.5e-08 Score=91.36 Aligned_cols=122 Identities=18% Similarity=0.042 Sum_probs=89.2
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+..|..+++++|... -..++..-.+.+|+|++++|.+..+- ++..|.+|+.|||++|.+.++...- .+|-|.+
T Consensus 283 Wq~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWH-LKLGNIK 355 (490)
T ss_pred Hhhhhhccccccchh-----hhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhH-hhhcCEe
Confidence 677888888888743 23456677788888888888877553 3777888888888888877765444 5777788
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC---C-CCCCCcccCeeecCC
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG---K-YCGSLENLDFISALH 291 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~---p-~i~~L~~L~~l~~~~ 291 (479)
+|.++.|.++.+ .++++|-+|.+|++. ++.... . +|++|..|..+.+.+
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~---~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLS---SNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheecccc---ccchhhHHHhcccccccHHHHHhhcC
Confidence 888888877777 357778888888888 776655 3 777777777766554
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=7.4e-07 Score=94.54 Aligned_cols=98 Identities=24% Similarity=0.356 Sum_probs=71.4
Q ss_pred ceeEEEecCCcCc-cCchhhcccccCCeeecCCCCCc-cCChhHHhcCcCCcEEecCCCccc-ccchhhhcCccCcEEEe
Q 037759 189 FLRVLDLGSLVLI-RYPSEIEYVFLLRYLNLNIPSLK-SLPSSLLNSLLNLYTLDMPFSYID-HTADEFWKMSKLRYLNF 265 (479)
Q Consensus 189 ~L~~L~L~~~~l~-~lp~~l~~L~~L~~L~L~~~~l~-~lp~~i~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l 265 (479)
.++.|+|++|.+. .+|..++++++|+.|+|++|.+. .+|..+ +.+++|+.|++++|++. .+|..+++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4777888888876 67778888888888888888876 677777 88888888888888665 57777888888888888
Q ss_pred ccCCCCCCCC--C-CCCC-CcccCeeecC
Q 037759 266 GSITLSAHPG--K-YCGS-LENLDFISAL 290 (479)
Q Consensus 266 ~~~~~~~~~~--p-~i~~-L~~L~~l~~~ 290 (479)
+ +|.... | .++. +..+..+++.
T Consensus 498 s---~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 498 N---GNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred c---CCcccccCChHHhhccccCceEEec
Confidence 8 776554 6 5552 2333444444
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.3e-07 Score=89.31 Aligned_cols=147 Identities=18% Similarity=0.043 Sum_probs=98.0
Q ss_pred CCCeEEEEEEcCCCCccccc--cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh--hccc
Q 037759 137 WENVKRFTVHGNLNDFEFLD--HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE--IEYV 210 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~--~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~--l~~L 210 (479)
.+++|.+++. +......+. -. |+++|.|++++|-.. .......+...+++|+.|+++.|.+....++ -..+
T Consensus 120 ~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLD-NYRVEDAGIEEYSKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeec-CccccccchhhhhhhCCcceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5567888888 666654442 22 999999999888632 2234557788899999999999987633222 2356
Q ss_pred ccCCeeecCCCCCc--cCChhHHhcCcCCcEEecCCCc-ccccchhhhcCccCcEEEeccCCCCCCCC-C---CCCCCcc
Q 037759 211 FLLRYLNLNIPSLK--SLPSSLLNSLLNLYTLDMPFSY-IDHTADEFWKMSKLRYLNFGSITLSAHPG-K---YCGSLEN 283 (479)
Q Consensus 211 ~~L~~L~L~~~~l~--~lp~~i~~~l~~L~~L~l~~~~-l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p---~i~~L~~ 283 (479)
.+|+.|.++.|+++ .+..-+ ..+++|+.|.+..|+ +..-.....-++.|+.|+++ ++.... + .++.++.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~-~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs---~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWIL-LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS---NNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHH-HhCCcHHHhhhhcccccceecchhhhhhHHhhcccc---CCcccccccccccccccc
Confidence 78899999998877 333334 678889999998883 32222335567778888888 766555 3 2335555
Q ss_pred cCeeecC
Q 037759 284 LDFISAL 290 (479)
Q Consensus 284 L~~l~~~ 290 (479)
|..+++.
T Consensus 273 L~~Lnls 279 (505)
T KOG3207|consen 273 LNQLNLS 279 (505)
T ss_pred hhhhhcc
Confidence 5555444
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=2.2e-06 Score=91.02 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=35.9
Q ss_pred CCeeecCCCCCc-cCChhHHhcCcCCcEEecCCCccc-ccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCee
Q 037759 213 LRYLNLNIPSLK-SLPSSLLNSLLNLYTLDMPFSYID-HTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFI 287 (479)
Q Consensus 213 L~~L~L~~~~l~-~lp~~i~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l 287 (479)
++.|+|++|.+. .+|..+ +++++|+.|++++|.+. .+|..++.+++|+.|+++ +|.... | .+++++.|+.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs---~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS---YNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC---CCCCCCCCchHHhcCCCCCEE
Confidence 444455555444 344444 55555555555555433 444445555555555555 444433 4 44445555555
Q ss_pred ecC
Q 037759 288 SAL 290 (479)
Q Consensus 288 ~~~ 290 (479)
++.
T Consensus 496 ~Ls 498 (623)
T PLN03150 496 NLN 498 (623)
T ss_pred ECc
Confidence 444
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.5e-06 Score=57.33 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=19.0
Q ss_pred ceeEEEecCCcCccCchhhcccccCCeeecCCCCCccC
Q 037759 189 FLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSL 226 (479)
Q Consensus 189 ~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~l 226 (479)
+|++|++++|+++.+|..+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555555444
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=1e-06 Score=82.65 Aligned_cols=177 Identities=18% Similarity=0.092 Sum_probs=95.0
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc----CccCchh-------hcccccCCeeecCCCCCc---
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV----LIRYPSE-------IEYVFLLRYLNLNIPSLK--- 224 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~----l~~lp~~-------l~~L~~L~~L~L~~~~l~--- 224 (479)
...+..+++++|....--.......+.+.+.||.-++++-- ..++|+. +-..++|++|+||+|-+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 44445555555543110112344455555666666665432 1133332 223446666666666543
Q ss_pred --cCChhHHhcCcCCcEEecCCCcccccch--------------hhhcCccCcEEEeccCCCCCCCC-C--CCC----CC
Q 037759 225 --SLPSSLLNSLLNLYTLDMPFSYIDHTAD--------------EFWKMSKLRYLNFGSITLSAHPG-K--YCG----SL 281 (479)
Q Consensus 225 --~lp~~i~~~l~~L~~L~l~~~~l~~lp~--------------~~~~L~~L~~L~l~~~~~~~~~~-p--~i~----~L 281 (479)
.+-+-+ .+++.|++|.|.+|.+..... ..++-++||.+..+ +|+.-. + .+. ..
T Consensus 109 ~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~---rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 109 IRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG---RNRLENGGATALAEAFQSH 184 (382)
T ss_pred hHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee---ccccccccHHHHHHHHHhc
Confidence 121223 566667777777665543321 12344567777777 665444 3 222 44
Q ss_pred cccCeeecCCCCC------ChhhhcCCCCCCCeEEEEeCCc--cchHHHHHHhccCCCccEEEeec
Q 037759 282 ENLDFISALHPCC------CPEDILGRLPNLQNIQIWGDLI--YYQSLLSKILYRLSCLESLKLAK 339 (479)
Q Consensus 282 ~~L~~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~ 339 (479)
+.|..+.+..+.. ...+++..+++|+.|+++.|-+ -....+...+..+++|++|++.+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 5666665553211 2222378899999999996541 02244556777888999999876
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.7e-07 Score=82.58 Aligned_cols=101 Identities=17% Similarity=0.023 Sum_probs=56.0
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-CccC--chhhcccccCCeeecCCCCCcc-----CChhH
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIRY--PSEIEYVFLLRYLNLNIPSLKS-----LPSSL 230 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l--p~~l~~L~~L~~L~L~~~~l~~-----lp~~i 230 (479)
|++|+.|.+.|++ +.+.+...+.+-.+|+.|+++.+. +++. ---+.+++.|..|++++|.+.. +-..+
T Consensus 209 C~kLk~lSlEg~~----LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 209 CSKLKNLSLEGLR----LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHhhhhccccccc----cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 6777777777776 334444556666777777777665 5432 2234566677777777665331 11112
Q ss_pred HhcCcCCcEEecCCC--cc--cccchhhhcCccCcEEEec
Q 037759 231 LNSLLNLYTLDMPFS--YI--DHTADEFWKMSKLRYLNFG 266 (479)
Q Consensus 231 ~~~l~~L~~L~l~~~--~l--~~lp~~~~~L~~L~~L~l~ 266 (479)
-.+|..|+++++ ++ ..+..-..+.++|.+|+++
T Consensus 285 ---se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 285 ---SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred ---chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence 235566666665 22 2222334556666666666
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3e-06 Score=55.83 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=33.3
Q ss_pred ccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch
Q 037759 211 FLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD 252 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~ 252 (479)
++|++|++++|.++.+|+.+ ++|++|++|++++|.+.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCcC
Confidence 47889999999999998877 899999999999998887764
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=4.9e-06 Score=88.34 Aligned_cols=82 Identities=23% Similarity=0.199 Sum_probs=45.7
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCC--hhHHhcCcC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLP--SSLLNSLLN 236 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp--~~i~~~l~~ 236 (479)
+|.|++|.+.+-.. ........+.++++|+.||+++++++.+ .++++|++|+.|.+++=.+..-+ ..+ -+|++
T Consensus 147 LPsL~sL~i~~~~~---~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQF---DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKK 221 (699)
T ss_pred CcccceEEecCcee---cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccC
Confidence 66666666666543 2222345556666666666666666655 55666666666666654444221 233 45666
Q ss_pred CcEEecCCC
Q 037759 237 LYTLDMPFS 245 (479)
Q Consensus 237 L~~L~l~~~ 245 (479)
|++||++..
T Consensus 222 L~vLDIS~~ 230 (699)
T KOG3665|consen 222 LRVLDISRD 230 (699)
T ss_pred CCeeecccc
Confidence 666666555
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=1.2e-05 Score=85.29 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=99.8
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc--cCchhhcccccCCeeecCCCCCccCChhHHhcCcC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI--RYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLN 236 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~ 236 (479)
..+|+.|.+.|.... ...++...-..+|.|+.|.+++-.+. ++-.-..++++|+.||++++.++.+ .++ ++|++
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 678888888886653 56677788889999999999998765 3344456789999999999999999 788 99999
Q ss_pred CcEEecCCCcccccc--hhhhcCccCcEEEeccCCCCCCCC-C-CC------C-CCcccCeeecCC
Q 037759 237 LYTLDMPFSYIDHTA--DEFWKMSKLRYLNFGSITLSAHPG-K-YC------G-SLENLDFISALH 291 (479)
Q Consensus 237 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~~-p-~i------~-~L~~L~~l~~~~ 291 (479)
||+|.+++=.+..-+ ..+.+|++|+.||++ .-+... + -+ + .|++|+.+++++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS---~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS---RDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecc---ccccccchHHHHHHHHhcccCccccEEecCC
Confidence 999999876555433 458899999999999 544333 2 11 1 789999999997
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=5.8e-06 Score=67.52 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=57.7
Q ss_pred HhCcCCceeEEEecCCcCccCchhhccc-ccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCc
Q 037759 183 IYKMFKFLRVLDLGSLVLIRYPSEIEYV-FLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLR 261 (479)
Q Consensus 183 ~~~~l~~L~~L~L~~~~l~~lp~~l~~L-~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~ 261 (479)
.+....+|...+|++|.+..+|+.|... +.++.|++.+|.+.++|.++ ..++.|+.|+++.|.+...|.-+..|.+|-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 3455566677777777777777666544 36777777777777777776 777777777777777777777666677777
Q ss_pred EEEec
Q 037759 262 YLNFG 266 (479)
Q Consensus 262 ~L~l~ 266 (479)
+|+..
T Consensus 127 ~Lds~ 131 (177)
T KOG4579|consen 127 MLDSP 131 (177)
T ss_pred HhcCC
Confidence 77666
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=3.6e-06 Score=85.21 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=46.2
Q ss_pred hCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEE
Q 037759 184 YKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYL 263 (479)
Q Consensus 184 ~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 263 (479)
+..+++|..|++.+|.+..+...+..+++|++|++++|.|+.+. .+ ..++.|+.|++.+|.+..++. +..+.+|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l-~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GL-STLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-ch-hhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 45556666666666666555444555666666666666666553 23 455556666666665555543 4445556666
Q ss_pred Eec
Q 037759 264 NFG 266 (479)
Q Consensus 264 ~l~ 266 (479)
+++
T Consensus 168 ~l~ 170 (414)
T KOG0531|consen 168 DLS 170 (414)
T ss_pred cCC
Confidence 665
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=2.6e-05 Score=71.94 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=35.8
Q ss_pred CcCCceeEEEecCCcCc---cCchhhcccccCCeeecCCCCCc----cCChhHHhcCcCCcEEecCCC--cccccchhhh
Q 037759 185 KMFKFLRVLDLGSLVLI---RYPSEIEYVFLLRYLNLNIPSLK----SLPSSLLNSLLNLYTLDMPFS--YIDHTADEFW 255 (479)
Q Consensus 185 ~~l~~L~~L~L~~~~l~---~lp~~l~~L~~L~~L~L~~~~l~----~lp~~i~~~l~~L~~L~l~~~--~l~~lp~~~~ 255 (479)
...++++.|||.+|.+. ++-..+.+|++|++|++++|++. .+| ..+.+|++|-+.++ ..+.....+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhhhh
Confidence 34445555555555544 22233344555555555554422 232 12345555555554 3333444445
Q ss_pred cCccCcEEEec
Q 037759 256 KMSKLRYLNFG 266 (479)
Q Consensus 256 ~L~~L~~L~l~ 266 (479)
.+++++.|.++
T Consensus 144 ~lP~vtelHmS 154 (418)
T KOG2982|consen 144 DLPKVTELHMS 154 (418)
T ss_pred cchhhhhhhhc
Confidence 55555555555
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=4.8e-06 Score=76.65 Aligned_cols=182 Identities=20% Similarity=0.182 Sum_probs=89.3
Q ss_pred CCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cCchhhcccccCCeeecCCCC-CccCC-hhHHhcCcC
Q 037759 160 SFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RYPSEIEYVFLLRYLNLNIPS-LKSLP-SSLLNSLLN 236 (479)
Q Consensus 160 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~l~~L~~L~~L~L~~~~-l~~lp-~~i~~~l~~ 236 (479)
+.++.++++.... ...-....++.+.+|+-|.+.|+++. .+-..+.+=.+|+.|+++.+. +++.. .-+|.+++.
T Consensus 185 sRlq~lDLS~s~i---t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI---TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhhe---eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 3455555555443 22233444555555555555555544 223334444555555555532 44322 122355555
Q ss_pred CcEEecCCCcc-cc-cchhhhc-CccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEe
Q 037759 237 LYTLDMPFSYI-DH-TADEFWK-MSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWG 313 (479)
Q Consensus 237 L~~L~l~~~~l-~~-lp~~~~~-L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 313 (479)
|+.|++++|.+ .+ +...+.. =++|+.|+++ ||... |+. ..+......+|+|..|+++.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls---G~rrn---------l~~-------sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLS---GYRRN---------LQK-------SHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhh---hhHhh---------hhh-------hHHHHHHHhCCceeeecccc
Confidence 55555555521 11 1111111 1234445555 43211 110 11222145788888888884
Q ss_pred CCccchHHHHHHhccCCCccEEEeec-CCCCC-CccEEEeecccccCcceEEEEeccc
Q 037759 314 DLIYYQSLLSKILYRLSCLESLKLAK-ESKIP-RRSNIILAKYQFPPSLTHLSFLNIE 369 (479)
Q Consensus 314 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~lp-~L~~L~l~~~~lp~~L~~L~l~~~~ 369 (479)
+.. ........+.+++.|++|.++. -++.| .+- .+.+. |.|.+|++.+|-
T Consensus 323 ~v~-l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~----~l~s~-psl~yLdv~g~v 374 (419)
T KOG2120|consen 323 SVM-LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL----ELNSK-PSLVYLDVFGCV 374 (419)
T ss_pred ccc-cCchHHHHHHhcchheeeehhhhcCCChHHee----eeccC-cceEEEEecccc
Confidence 431 4456666777888888888866 12222 111 22345 888888888875
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=7.9e-05 Score=68.84 Aligned_cols=197 Identities=16% Similarity=0.047 Sum_probs=111.7
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhh-cccccCCeeecCCCCCc--cCChhHHhcCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEI-EYVFLLRYLNLNIPSLK--SLPSSLLNSLL 235 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l-~~L~~L~~L~L~~~~l~--~lp~~i~~~l~ 235 (479)
+++++.+++.+|... ..+.+..++.+|++|++|+++.|.+...-+.+ ..+++|+.|-|.++.+. .....+ ..++
T Consensus 70 ~~~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDLP 146 (418)
T ss_pred hhhhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcch
Confidence 889999999999864 44556778999999999999999976433333 35678999999988754 555566 8899
Q ss_pred CCcEEecCCCcccccc---hhhhcCc-cCcEEEeccCCCCCCCC---C-CCC-CCcccCee-ecCC---CCCChhhhcCC
Q 037759 236 NLYTLDMPFSYIDHTA---DEFWKMS-KLRYLNFGSITLSAHPG---K-YCG-SLENLDFI-SALH---PCCCPEDILGR 302 (479)
Q Consensus 236 ~L~~L~l~~~~l~~lp---~~~~~L~-~L~~L~l~~~~~~~~~~---p-~i~-~L~~L~~l-~~~~---~~~~~~~~l~~ 302 (479)
.++.|.++.|++..+- +.+.... .+++|... +|.... . .++ -.+++..+ .+++ ....-.. ...
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~---~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~-se~ 222 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQL---PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG-SEP 222 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcC---CcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc-CCC
Confidence 9999999988554431 1122222 34555555 543222 0 111 12222221 1221 0011111 333
Q ss_pred CCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC---CCccEEEeecccccCcceEEE
Q 037759 303 LPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI---PRRSNIILAKYQFPPSLTHLS 364 (479)
Q Consensus 303 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l---p~L~~L~l~~~~lp~~L~~L~ 364 (479)
++.+--|.+..+++ ..=...+.+.++++|..|++...-.. .+=+...+-++.+ ++++.|+
T Consensus 223 ~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL-~~v~vLN 285 (418)
T KOG2982|consen 223 FPSLSCLNLGANNI-DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL-TKVQVLN 285 (418)
T ss_pred CCcchhhhhccccc-ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec-cceEEec
Confidence 44444555554331 22334456677777777777651111 1222222244555 6666553
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.51 E-value=5.4e-06 Score=79.68 Aligned_cols=294 Identities=17% Similarity=0.115 Sum_probs=172.9
Q ss_pred CCeEEEEEEcCCCCcc-ccccc---CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-CccC-ch-hhccc
Q 037759 138 ENVKRFTVHGNLNDFE-FLDHF---DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIRY-PS-EIEYV 210 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~-~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~-~l~~L 210 (479)
..++.+++.+...... ....+ +++++.|.+.++... ........-..+++|+.|++..|. ++.. .. -...+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 5567788773322221 11122 899999999988852 333445566788999999999965 5522 22 23457
Q ss_pred ccCCeeecCCCC-Ccc--CChhHHhcCcCCcEEecCCC---cccccchhhhcCccCcEEEeccCCCCCCCC-C---CCC-
Q 037759 211 FLLRYLNLNIPS-LKS--LPSSLLNSLLNLYTLDMPFS---YIDHTADEFWKMSKLRYLNFGSITLSAHPG-K---YCG- 279 (479)
Q Consensus 211 ~~L~~L~L~~~~-l~~--lp~~i~~~l~~L~~L~l~~~---~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p---~i~- 279 (479)
++|+||+++++. ++. +-.-. .++.+++.+..++| .++.+-..-+...-+..+++. .|.... . .+.
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~-rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~---~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQ-RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ---HCNQLTDEDLWLIAC 291 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHh-ccchhhhhhhhcccccccHHHHHHHhccChHhhccchh---hhccccchHHHHHhh
Confidence 899999999876 442 22223 67777888888887 222222212344456677777 775444 2 222
Q ss_pred CCcccCeeecCCC----CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHh-ccCCCccEEEeecCCC-CC-CccEEEee
Q 037759 280 SLENLDFISALHP----CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKIL-YRLSCLESLKLAKESK-IP-RRSNIILA 352 (479)
Q Consensus 280 ~L~~L~~l~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~-lp-~L~~L~l~ 352 (479)
....|+.+...+. ...+.++....++|+.|.+.++.- ..+.-...+ .+.+.|+.+++..... +. .|.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl--- 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL--- 367 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceehhhhHhhh---
Confidence 5556666655541 122333234678999999997651 222222233 3457888887765111 10 12211
Q ss_pred cccccCcceEEEEecccCCCCC-ccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEc-CCCCCCccEeEEecCC
Q 037759 353 KYQFPPSLTHLSFLNIELMDDP-MPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMG-IRAMPKLECSILNPCA 430 (479)
Q Consensus 353 ~~~lp~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~ 430 (479)
-... +.|+.|.++.|....+. +..+. -...+...|+.+.+.+|+.+++-... ....++|+.+++.+|.
T Consensus 368 s~~C-~~lr~lslshce~itD~gi~~l~---------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 368 SRNC-PRLRVLSLSHCELITDEGIRHLS---------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCC-chhccCChhhhhhhhhhhhhhhh---------hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 0133 78899999988643322 22221 12355678888999999876654322 2457899999999998
Q ss_pred CCCCCc--ccccCCCCCCEEEee
Q 037759 431 HLKMIP--EQLWCLKSLNKLELW 451 (479)
Q Consensus 431 ~l~~lp--~~l~~l~~L~~L~l~ 451 (479)
..+.=+ ..-.++|+++.....
T Consensus 438 ~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 438 DVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhhhHHHHhhCccceehhhc
Confidence 876533 233456776665443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=2.5e-05 Score=63.93 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=56.8
Q ss_pred cchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh
Q 037759 177 SNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE 253 (479)
Q Consensus 177 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~ 253 (479)
..+++.+-.+++-++.|++++|.+..+|..+..++.||.|+++.|++...|.-+ ..|.+|-.|+..+|.+..+|-.
T Consensus 66 k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 66 KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHHhcCCCCccccCcHH
Confidence 344556666667777788888888888877888888888888888888887777 5577888888877777777644
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=6e-06 Score=84.49 Aligned_cols=125 Identities=20% Similarity=0.259 Sum_probs=94.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hccccc
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFL 212 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~ 212 (479)
.|-++...++. .+....+-+++ .+.+++|.+++|.. +.+ +.+..+++|+.|||++|.+..+|.- ...+ +
T Consensus 162 ~Wn~L~~a~fs-yN~L~~mD~SLqll~ale~LnLshNk~----~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 162 VWNKLATASFS-YNRLVLMDESLQLLPALESLNLSHNKF----TKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-K 233 (1096)
T ss_pred hhhhHhhhhcc-hhhHHhHHHHHHHHHHhhhhccchhhh----hhh--HHHHhcccccccccccchhccccccchhhh-h
Confidence 45566666776 55555566666 89999999999984 333 4888999999999999998877742 2233 4
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccc--hhhhcCccCcEEEeccCCCCCC
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA--DEFWKMSKLRYLNFGSITLSAH 273 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~ 273 (479)
|..|.+++|.++++- ++ .+|.+|+.||+++|-+.... .-++.|..|+.|.+. ||..
T Consensus 234 L~~L~lrnN~l~tL~-gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le---GNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLR-GI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE---GNPL 291 (1096)
T ss_pred heeeeecccHHHhhh-hH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc---CCcc
Confidence 999999999999884 67 89999999999999443332 226788889999998 7653
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.0007 Score=66.78 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=48.5
Q ss_pred CCeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCC-cCccCchhhcccccCCee
Q 037759 138 ENVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSL-VLIRYPSEIEYVFLLRYL 216 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~l~~L~~L~~L 216 (479)
...++|.+. ++....+| .+.++|++|.+.+|.. +...+ ..+ .++|+.|++++| .+..+|.. |+.|
T Consensus 52 ~~l~~L~Is-~c~L~sLP-~LP~sLtsL~Lsnc~n---LtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 52 RASGRLYIK-DCDIESLP-VLPNELTEITIENCNN---LTTLP-GSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred cCCCEEEeC-CCCCcccC-CCCCCCcEEEccCCCC---cccCC-chh--hhhhhheEccCcccccccccc------cceE
Confidence 556677887 66666666 3466788888877664 22222 222 246888888887 56667654 5555
Q ss_pred ecCCCC---CccCChhH
Q 037759 217 NLNIPS---LKSLPSSL 230 (479)
Q Consensus 217 ~L~~~~---l~~lp~~i 230 (479)
+++++. +..+|+++
T Consensus 118 ~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 118 EIKGSATDSIKNVPNGL 134 (426)
T ss_pred EeCCCCCcccccCcchH
Confidence 565543 55666655
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.17 E-value=0.0011 Score=65.36 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=15.0
Q ss_pred eeEEEecCCc-CccCchhhcccccCCeeecCCC-CCccCC
Q 037759 190 LRVLDLGSLV-LIRYPSEIEYVFLLRYLNLNIP-SLKSLP 227 (479)
Q Consensus 190 L~~L~L~~~~-l~~lp~~l~~L~~L~~L~L~~~-~l~~lp 227 (479)
|+.|.+++|. ++.+|..+. .+|++|++++| .+..+|
T Consensus 74 LtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 74 LTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 4444444432 333343332 24444444444 344444
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.11 E-value=4.8e-05 Score=78.11 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred HHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccC
Q 037759 181 EKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKL 260 (479)
Q Consensus 181 ~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L 260 (479)
+.++.-++.|+.|||+.|+++..- .+..|.+|+.|||++|.+..+|.--...+. |+.|++++|.++.+- ++.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 344555556666666666655432 555566666666666665555532202222 666666666555553 35666666
Q ss_pred cEEEec
Q 037759 261 RYLNFG 266 (479)
Q Consensus 261 ~~L~l~ 266 (479)
+.|+++
T Consensus 257 ~~LDls 262 (1096)
T KOG1859|consen 257 YGLDLS 262 (1096)
T ss_pred hccchh
Confidence 666666
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.0011 Score=58.10 Aligned_cols=80 Identities=24% Similarity=0.191 Sum_probs=53.7
Q ss_pred ceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch--hhhcCccCcEEEec
Q 037759 189 FLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD--EFWKMSKLRYLNFG 266 (479)
Q Consensus 189 ~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~ 266 (479)
+...+||++|.+..++ .+..+..|.+|.+.+|+|+.+.+.+-.-+++|+.|.+.+|++.++.+ .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3456777777765442 35566777788888888877777663445678888888876666542 35667777777777
Q ss_pred cCCCCC
Q 037759 267 SITLSA 272 (479)
Q Consensus 267 ~~~~~~ 272 (479)
++.
T Consensus 122 ---~Np 124 (233)
T KOG1644|consen 122 ---GNP 124 (233)
T ss_pred ---CCc
Confidence 554
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.83 E-value=0.002 Score=58.99 Aligned_cols=240 Identities=18% Similarity=0.102 Sum_probs=136.5
Q ss_pred HHhCcCCceeEEEecCCcCc-----cCchhhcccccCCeeecCCCC----CccCChhH------HhcCcCCcEEecCCCc
Q 037759 182 KIYKMFKFLRVLDLGSLVLI-----RYPSEIEYVFLLRYLNLNIPS----LKSLPSSL------LNSLLNLYTLDMPFSY 246 (479)
Q Consensus 182 ~~~~~l~~L~~L~L~~~~l~-----~lp~~l~~L~~L~~L~L~~~~----l~~lp~~i------~~~l~~L~~L~l~~~~ 246 (479)
..+..+..+..++||+|.|. .+...+.+-.+|+..+++.-. ..++|+++ +-+++.|++.++++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34455788888999998876 344556667788888887632 22444432 2678999999999983
Q ss_pred c-cccc----hhhhcCccCcEEEeccCCCCCCCC--C-CCC-------------CCcccCeeecCCCC----C--Chhhh
Q 037759 247 I-DHTA----DEFWKMSKLRYLNFGSITLSAHPG--K-YCG-------------SLENLDFISALHPC----C--CPEDI 299 (479)
Q Consensus 247 l-~~lp----~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~-------------~L~~L~~l~~~~~~----~--~~~~~ 299 (479)
+ ...| +-+++-+.|.||.++ +|-.-. . .|+ +-+.|+.++|..+. . ....+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~---NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLN---NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEee---cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 2 2222 346777889999998 664222 1 232 44567777776411 1 11111
Q ss_pred cCCCCCCCeEEEEeCCccchH-----HHHHHhccCCCccEEEeecCCCCCCccEEEe--ecccccCcceEEEEecccCCC
Q 037759 300 LGRLPNLQNIQIWGDLIYYQS-----LLSKILYRLSCLESLKLAKESKIPRRSNIIL--AKYQFPPSLTHLSFLNIELMD 372 (479)
Q Consensus 300 l~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l--~~~~lp~~L~~L~l~~~~l~~ 372 (479)
+..-.+|+.+.+..|. ... -....+..+.+|+.|++.++.+- ..-+..+ .+... +.|+.|.+..|-++.
T Consensus 181 l~sh~~lk~vki~qNg--Irpegv~~L~~~gl~y~~~LevLDlqDNtft-~~gS~~La~al~~W-~~lrEL~lnDClls~ 256 (388)
T COG5238 181 LESHENLKEVKIQQNG--IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT-LEGSRYLADALCEW-NLLRELRLNDCLLSN 256 (388)
T ss_pred HHhhcCceeEEeeecC--cCcchhHHHHHHHHHHhCcceeeeccccchh-hhhHHHHHHHhccc-chhhhccccchhhcc
Confidence 3334578888887544 222 22344566778888888763221 1111111 12233 778899999998766
Q ss_pred CCccccccCccCceEEeccCCCCCcceEeeccCCCCCe-e------EEcCCCCCCccEeEEecCCCCCCCc
Q 037759 373 DPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQE-W------TMGIRAMPKLECSILNPCAHLKMIP 436 (479)
Q Consensus 373 ~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~-~------~~~~~~~~~L~~L~l~~c~~l~~lp 436 (479)
.....+-.- ++.-.+|+|..|.+.+...-.. + .+..+++|-|..|.+.+ +.++...
T Consensus 257 ~G~~~v~~~-------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~~ 319 (388)
T COG5238 257 EGVKSVLRR-------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKELA 319 (388)
T ss_pred ccHHHHHHH-------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhHH
Confidence 554432110 0112256666666554221111 1 12346788888888887 4566543
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.80 E-value=0.00057 Score=69.25 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=80.6
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+.++..+.+.++... .+ ...+..+++|++|++++|.|+.+. ++..++.|+.|++++|.+..+.. + ..+++|+
T Consensus 94 ~~~l~~l~l~~n~i~----~i-~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~-~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE----KI-ENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-L-ESLKSLK 165 (414)
T ss_pred ccceeeeeccccchh----hc-ccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-C-ccchhhh
Confidence 788888888888742 22 112677889999999999888763 46777779999999998888764 3 5688899
Q ss_pred EEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC
Q 037759 239 TLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
.+++++|.+..+... ...+.+++.+.+. ++....
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~---~n~i~~ 200 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLG---GNSIRE 200 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhcc---CCchhc
Confidence 999999988888664 5788888888888 665444
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.71 E-value=0.00057 Score=70.55 Aligned_cols=138 Identities=19% Similarity=0.130 Sum_probs=68.9
Q ss_pred HHHhCcCCceeEEEecCCc-Ccc--CchhhcccccCCeeecCCC-C-CccCC---hhHHhcCcCCcEEecCCCc-ccccc
Q 037759 181 EKIYKMFKFLRVLDLGSLV-LIR--YPSEIEYVFLLRYLNLNIP-S-LKSLP---SSLLNSLLNLYTLDMPFSY-IDHTA 251 (479)
Q Consensus 181 ~~~~~~l~~L~~L~L~~~~-l~~--lp~~l~~L~~L~~L~L~~~-~-l~~lp---~~i~~~l~~L~~L~l~~~~-l~~lp 251 (479)
......++.|+.|.+.++. +.. +-......++|+.|+++++ . +...+ ..+...+++|+.|+++++. +...-
T Consensus 181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 3444456777777777664 333 2234455667777777652 1 11111 1122456777777777763 44332
Q ss_pred -hhh-hcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccC
Q 037759 252 -DEF-WKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRL 329 (479)
Q Consensus 252 -~~~-~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 329 (479)
..+ ..+++|++|.+. +|.... ...+..+...+++|+.|+++.+.......+......+
T Consensus 261 l~~l~~~c~~L~~L~l~---~c~~lt-----------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLS---NCSNLT-----------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred HHHHHhhCCCcceEccC---CCCccc-----------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 112 225667777655 544211 1122221345666777777755411133344444556
Q ss_pred CCccEEEee
Q 037759 330 SCLESLKLA 338 (479)
Q Consensus 330 ~~L~~L~l~ 338 (479)
++|+.|.+.
T Consensus 321 ~~l~~l~~~ 329 (482)
T KOG1947|consen 321 PNLRELKLL 329 (482)
T ss_pred cchhhhhhh
Confidence 666665543
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00035 Score=64.11 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=74.5
Q ss_pred CCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCCh--hHHhcCcCC
Q 037759 160 SFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPS--SLLNSLLNL 237 (479)
Q Consensus 160 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~--~i~~~l~~L 237 (479)
.+.+.|.+.||.. .++ .+..+|+.|.||.|+-|+|+.+ ..+..+++|+.|+|+.|.|..+.+ .+ .++++|
T Consensus 19 ~~vkKLNcwg~~L----~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YL-knlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGL----DDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYL-KNLPSL 90 (388)
T ss_pred HHhhhhcccCCCc----cHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHH-hcCchh
Confidence 4556666777763 333 6788999999999999999876 458889999999999999887754 34 889999
Q ss_pred cEEecCCC-cccccc-----hhhhcCccCcEEEec
Q 037759 238 YTLDMPFS-YIDHTA-----DEFWKMSKLRYLNFG 266 (479)
Q Consensus 238 ~~L~l~~~-~l~~lp-----~~~~~L~~L~~L~l~ 266 (479)
++|-|..| ....-+ ..+.-|++|+.|+-.
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 99999887 333333 235678888888654
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.0007 Score=69.89 Aligned_cols=111 Identities=16% Similarity=0.070 Sum_probs=77.2
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCC-c-CccC----chhhcccccCCeeecCCCC-CccCC-hhH
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSL-V-LIRY----PSEIEYVFLLRYLNLNIPS-LKSLP-SSL 230 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~-l~~l----p~~l~~L~~L~~L~L~~~~-l~~lp-~~i 230 (479)
++.|+.+.+.++... ...........+++|+.|+++++ . +... +.....+.+|+.|+++++. ++..- ..+
T Consensus 187 ~~~L~~l~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKI--TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccC--ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 688999988888752 22225678899999999999984 2 2211 2234456889999999887 55332 233
Q ss_pred HhcCcCCcEEecCCCc-ccc--cchhhhcCccCcEEEeccCCCCCCC
Q 037759 231 LNSLLNLYTLDMPFSY-IDH--TADEFWKMSKLRYLNFGSITLSAHP 274 (479)
Q Consensus 231 ~~~l~~L~~L~l~~~~-l~~--lp~~~~~L~~L~~L~l~~~~~~~~~ 274 (479)
...+++|++|.+..|. ++. +-....++++|++|+++ +|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~---~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLS---GCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeee---cCccc
Confidence 1348899999988883 433 33445778889999999 87654
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.32 E-value=0.0045 Score=54.40 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=63.6
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcc-cccCCeeecCCCCCccCCh--hHHhcCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEY-VFLLRYLNLNIPSLKSLPS--SLLNSLL 235 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~-L~~L~~L~L~~~~l~~lp~--~i~~~l~ 235 (479)
......+++.+|+. .....|..++.|.+|.+.+|+|+.+-+.+.. +++|..|.+.+|.+.++.+ .+ ..++
T Consensus 41 ~d~~d~iDLtdNdl------~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDL------RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCP 113 (233)
T ss_pred ccccceecccccch------hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCC
Confidence 33455566666653 1234567777777777777777766544443 4457777777777665422 23 5677
Q ss_pred CCcEEecCCCcccccch----hhhcCccCcEEEec
Q 037759 236 NLYTLDMPFSYIDHTAD----EFWKMSKLRYLNFG 266 (479)
Q Consensus 236 ~L~~L~l~~~~l~~lp~----~~~~L~~L~~L~l~ 266 (479)
+|++|.+-+|.++.-+. -+.++++|+.|++.
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 77777777776555442 25677778888777
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.29 E-value=0.0017 Score=59.45 Aligned_cols=129 Identities=18% Similarity=0.121 Sum_probs=64.2
Q ss_pred hcccccCCeeecCCCCCc-cCCh----hHHhcCcCCcEEecCCCcccccchh-h-------------hcCccCcEEEecc
Q 037759 207 IEYVFLLRYLNLNIPSLK-SLPS----SLLNSLLNLYTLDMPFSYIDHTADE-F-------------WKMSKLRYLNFGS 267 (479)
Q Consensus 207 l~~L~~L~~L~L~~~~l~-~lp~----~i~~~l~~L~~L~l~~~~l~~lp~~-~-------------~~L~~L~~L~l~~ 267 (479)
+-.+++|+..+|+.|.+. +.|+ -+ ++-+.|++|.+++|.+..+..+ + ..-+.|+.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~i-s~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg- 165 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLI-SSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG- 165 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHH-hcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec-
Confidence 344555666666655433 2222 23 4555666666666644433211 1 234556666665
Q ss_pred CCCCCCCC-C-C-----CCCCcccCeeecCCCCCChh-------hhcCCCCCCCeEEEEeCCc--cchHHHHHHhccCCC
Q 037759 268 ITLSAHPG-K-Y-----CGSLENLDFISALHPCCCPE-------DILGRLPNLQNIQIWGDLI--YYQSLLSKILYRLSC 331 (479)
Q Consensus 268 ~~~~~~~~-p-~-----i~~L~~L~~l~~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~ 331 (479)
.++... | . +.+-+.|..+.+..++..+. .++..+.+|+.|++..|.+ -....+...+...+.
T Consensus 166 --rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 166 --RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred --cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 554433 2 1 11223444444433222221 1255678888888885530 022334455666677
Q ss_pred ccEEEeec
Q 037759 332 LESLKLAK 339 (479)
Q Consensus 332 L~~L~l~~ 339 (479)
|++|.+.+
T Consensus 244 lrEL~lnD 251 (388)
T COG5238 244 LRELRLND 251 (388)
T ss_pred hhhccccc
Confidence 88887755
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0017 Score=59.30 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=14.8
Q ss_pred cccCCeeecCCC--CCc-cCChhHHhcCcCCcEEecCCC
Q 037759 210 VFLLRYLNLNIP--SLK-SLPSSLLNSLLNLYTLDMPFS 245 (479)
Q Consensus 210 L~~L~~L~L~~~--~l~-~lp~~i~~~l~~L~~L~l~~~ 245 (479)
|++|++|.++.| .+. .++..+ .++++|++|++++|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceehh-hhCCceeEEeecCC
Confidence 344444444444 222 233333 33444455555444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0039 Score=34.13 Aligned_cols=20 Identities=35% Similarity=0.399 Sum_probs=11.3
Q ss_pred eeEEEecCCcCccCchhhcc
Q 037759 190 LRVLDLGSLVLIRYPSEIEY 209 (479)
Q Consensus 190 L~~L~L~~~~l~~lp~~l~~ 209 (479)
|++|++++|.++.+|.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55666666665555555443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0061 Score=55.71 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=57.2
Q ss_pred HHhCcCCceeEEEecCC--cCc-cCchhhcccccCCeeecCCCCCc---cCChhHHhcCcCCcEEecCCCcccccc----
Q 037759 182 KIYKMFKFLRVLDLGSL--VLI-RYPSEIEYVFLLRYLNLNIPSLK---SLPSSLLNSLLNLYTLDMPFSYIDHTA---- 251 (479)
Q Consensus 182 ~~~~~l~~L~~L~L~~~--~l~-~lp~~l~~L~~L~~L~L~~~~l~---~lp~~i~~~l~~L~~L~l~~~~l~~lp---- 251 (479)
..|..+++|+.|.++.| .+. .++....++++|++|++++|.++ +++ .+ ..+.+|..|++.+|....+-
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl-~~l~nL~~Ldl~n~~~~~l~dyre 136 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PL-KELENLKSLDLFNCSVTNLDDYRE 136 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hh-hhhcchhhhhcccCCccccccHHH
Confidence 34566778888888888 333 44444556688888888888765 333 24 67788888888888555553
Q ss_pred hhhhcCccCcEEEec
Q 037759 252 DEFWKMSKLRYLNFG 266 (479)
Q Consensus 252 ~~~~~L~~L~~L~l~ 266 (479)
.-+.-+++|++|+-.
T Consensus 137 ~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGC 151 (260)
T ss_pred HHHHHhhhhcccccc
Confidence 235667888888866
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0055 Score=33.54 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=8.4
Q ss_pred CcEEecCCCcccccchhh
Q 037759 237 LYTLDMPFSYIDHTADEF 254 (479)
Q Consensus 237 L~~L~l~~~~l~~lp~~~ 254 (479)
|++|++++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444445444444444433
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.31 E-value=0.033 Score=45.97 Aligned_cols=81 Identities=12% Similarity=0.221 Sum_probs=29.9
Q ss_pred HhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccC
Q 037759 183 IYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKL 260 (479)
Q Consensus 183 ~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L 260 (479)
+|.++.+|+.+.+.. .+..++ ..+.++.+|+.+.+..+ +..++...|.++.+++.+.+.. .+..++.. +..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444555555443 233332 23444445555555443 4444444444554555555543 33333322 3334555
Q ss_pred cEEEec
Q 037759 261 RYLNFG 266 (479)
Q Consensus 261 ~~L~l~ 266 (479)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 555544
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.11 E-value=0.054 Score=44.68 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=35.4
Q ss_pred hhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhc
Q 037759 179 YCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWK 256 (479)
Q Consensus 179 ~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~ 256 (479)
+....|..+++|+.+.+.++ +..++ ..+.++..|+.+.+.. .+..++...|..+.+|+.+++..+ +..++.. +.+
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 44445555555666665553 44333 2344554556665544 444555555455566666665443 4444432 444
Q ss_pred CccCcEEEec
Q 037759 257 MSKLRYLNFG 266 (479)
Q Consensus 257 L~~L~~L~l~ 266 (479)
. +|+.+.+.
T Consensus 103 ~-~l~~i~~~ 111 (129)
T PF13306_consen 103 C-NLKEINIP 111 (129)
T ss_dssp --T--EEE-T
T ss_pred C-CceEEEEC
Confidence 4 55555554
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.0019 Score=56.61 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=60.8
Q ss_pred cceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEc--CCCCCCccEeEEecCCCCCCCc
Q 037759 359 SLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMG--IRAMPKLECSILNPCAHLKMIP 436 (479)
Q Consensus 359 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~lp 436 (479)
.++.++-+++.|..+.+..+ ..+++++.|.+.+|.++.+|... .+..|+|+.|+|++|+.+++-.
T Consensus 102 ~IeaVDAsds~I~~eGle~L-------------~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL-------------RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred eEEEEecCCchHHHHHHHHH-------------hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 34556666666543333222 23567888999999998887532 3468999999999999998743
Q ss_pred -ccccCCCCCCEEEeeCCc
Q 037759 437 -EQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 437 -~~l~~l~~L~~L~l~~c~ 454 (479)
.++..+++|+.|.+++-+
T Consensus 169 L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHHhhhhHHHHhcCch
Confidence 477789999999999876
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.37 E-value=0.0023 Score=57.30 Aligned_cols=92 Identities=16% Similarity=0.055 Sum_probs=77.9
Q ss_pred hhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCc
Q 037759 179 YCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMS 258 (479)
Q Consensus 179 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~ 258 (479)
++...+..++..++||++.|++..+-..+.-+..|..|+++.|.+.-+|.+. +.+..+..+++..|+....|.++++++
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccC
Confidence 3345567788899999999988777777888888999999999999999988 888899999999889999999999999
Q ss_pred cCcEEEeccCCCCCCC
Q 037759 259 KLRYLNFGSITLSAHP 274 (479)
Q Consensus 259 ~L~~L~l~~~~~~~~~ 274 (479)
++++++.. ++...
T Consensus 112 ~~k~~e~k---~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQK---KTEFF 124 (326)
T ss_pred Ccchhhhc---cCcch
Confidence 99999888 65543
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.0036 Score=57.60 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=64.7
Q ss_pred CcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch--hhhcCccCcE
Q 037759 185 KMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD--EFWKMSKLRY 262 (479)
Q Consensus 185 ~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~ 262 (479)
+.+.+.+.|++-||.+..+ ....+++.|++|.|+-|.|+.+-+ + ..+++|+.|.|+.|.|..+.+ -+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-L-QRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-H-HHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4466788899999998765 235578999999999999999853 5 899999999999998877754 3688899998
Q ss_pred EEec
Q 037759 263 LNFG 266 (479)
Q Consensus 263 L~l~ 266 (479)
|-+.
T Consensus 93 LWL~ 96 (388)
T KOG2123|consen 93 LWLD 96 (388)
T ss_pred Hhhc
Confidence 8887
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.13 E-value=0.03 Score=28.41 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=5.7
Q ss_pred ceeEEEecCCcCccC
Q 037759 189 FLRVLDLGSLVLIRY 203 (479)
Q Consensus 189 ~L~~L~L~~~~l~~l 203 (479)
+|++|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555544443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.83 E-value=0.033 Score=28.26 Aligned_cols=16 Identities=50% Similarity=0.602 Sum_probs=6.5
Q ss_pred cCCeeecCCCCCccCC
Q 037759 212 LLRYLNLNIPSLKSLP 227 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp 227 (479)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.81 E-value=0.052 Score=30.92 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=12.2
Q ss_pred ccCCeeecCCCCCccCChhH
Q 037759 211 FLLRYLNLNIPSLKSLPSSL 230 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~lp~~i 230 (479)
++|++|+|++|.++.+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666555
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.81 E-value=0.052 Score=30.92 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=12.2
Q ss_pred ccCCeeecCCCCCccCChhH
Q 037759 211 FLLRYLNLNIPSLKSLPSSL 230 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~lp~~i 230 (479)
++|++|+|++|.++.+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666555
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.92 E-value=0.29 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.2
Q ss_pred CcCCcEEecCCCcccccchhh
Q 037759 234 LLNLYTLDMPFSYIDHTADEF 254 (479)
Q Consensus 234 l~~L~~L~l~~~~l~~lp~~~ 254 (479)
+++|++|++++|.+..+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999999764
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.92 E-value=0.29 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.2
Q ss_pred CcCCcEEecCCCcccccchhh
Q 037759 234 LLNLYTLDMPFSYIDHTADEF 254 (479)
Q Consensus 234 l~~L~~L~l~~~~l~~lp~~~ 254 (479)
+++|++|++++|.+..+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999999764
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.92 E-value=0.3 Score=43.22 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=19.3
Q ss_pred CcCCcEEecCCC-cccccc-hhhhcCccCcEEEec
Q 037759 234 LLNLYTLDMPFS-YIDHTA-DEFWKMSKLRYLNFG 266 (479)
Q Consensus 234 l~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~l~ 266 (479)
.++|+.|++++| +|++-. ..+.++++|+.|.++
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 456666666666 555443 335566666666666
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.53 E-value=0.048 Score=49.14 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=65.3
Q ss_pred ccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-C
Q 037759 201 IRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-Y 277 (479)
Q Consensus 201 ~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~ 277 (479)
.++| ..+.....-+.||++.|++..+-..+ +-++.|..|+++.|.+..+|.+++.+..++++... .+.... | .
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~---~n~~~~~p~s 106 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASH---KNNHSQQPKS 106 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhh---ccchhhCCcc
Confidence 3455 44666778899999999988888887 88999999999999999999999999999999888 655544 5 5
Q ss_pred CCCCcccCeee
Q 037759 278 CGSLENLDFIS 288 (479)
Q Consensus 278 i~~L~~L~~l~ 288 (479)
.+.++.+...+
T Consensus 107 ~~k~~~~k~~e 117 (326)
T KOG0473|consen 107 QKKEPHPKKNE 117 (326)
T ss_pred ccccCCcchhh
Confidence 44444444333
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.12 E-value=1.5 Score=24.92 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=9.4
Q ss_pred cCCeeecCCCCCccCCh
Q 037759 212 LLRYLNLNIPSLKSLPS 228 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~ 228 (479)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 35555555555555554
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.58 E-value=1.4 Score=24.88 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=9.6
Q ss_pred CCccEeEEecCCCCC
Q 037759 419 PKLECSILNPCAHLK 433 (479)
Q Consensus 419 ~~L~~L~l~~c~~l~ 433 (479)
++|+.|++.+|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 566666666666655
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.36 E-value=1.4 Score=24.35 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=6.7
Q ss_pred CceeEEEecCCcCc
Q 037759 188 KFLRVLDLGSLVLI 201 (479)
Q Consensus 188 ~~L~~L~L~~~~l~ 201 (479)
++|++|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666666554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.60 E-value=3.8 Score=23.33 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=5.7
Q ss_pred cCCeeecCCCCCc
Q 037759 212 LLRYLNLNIPSLK 224 (479)
Q Consensus 212 ~L~~L~L~~~~l~ 224 (479)
+|+.|++++|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.79 E-value=10 Score=21.84 Aligned_cols=14 Identities=43% Similarity=0.292 Sum_probs=8.0
Q ss_pred CceeEEEecCCcCc
Q 037759 188 KFLRVLDLGSLVLI 201 (479)
Q Consensus 188 ~~L~~L~L~~~~l~ 201 (479)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666554
No 89
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=40.83 E-value=1.2e+02 Score=20.76 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=40.7
Q ss_pred CCchhhHHHHhhhcccCCCceechhhHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeecCCCC
Q 037759 34 MLPFYLKLCCLYLSVFLVHFEISTKQSYQLWIAEGFIPNNNEATAERYLEQLINGGFVDAGKRGVRG 100 (479)
Q Consensus 34 ~L~~~~K~cfl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g 100 (479)
+|+...-.++.+++-+|++ .+...++.+.+- -........++.|.++++++......|+
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~-------~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLG-------ISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHT-------S-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHC-------cCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4556666777777777765 456666666553 2345567889999999999988766554
No 90
>PF14162 YozD: YozD-like protein
Probab=28.58 E-value=63 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=22.4
Q ss_pred HhcCCCCC--ChHHHHHHHHHHHHhCCceee
Q 037759 65 IAEGFIPN--NNEATAERYLEQLINGGFVDA 93 (479)
Q Consensus 65 ~a~g~i~~--~~~~~~~~~~~~L~~~~ll~~ 93 (479)
+.-||+.. .++++|..-|+.|+.+|.|..
T Consensus 22 ~kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 22 VKRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45588877 777888888888888888754
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.82 E-value=58 Score=33.77 Aligned_cols=38 Identities=16% Similarity=-0.019 Sum_probs=19.0
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSL 198 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 198 (479)
.+.+.++.+.+|+.. ..+.....-...++|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~--~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY--HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhh--chhhhhHHHHhcchhheeecccc
Confidence 455555555555532 11222334445555666666665
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.64 E-value=88 Score=20.06 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=7.9
Q ss_pred cccCcceEEEEec
Q 037759 355 QFPPSLTHLSFLN 367 (479)
Q Consensus 355 ~lp~~L~~L~l~~ 367 (479)
.+|+++++|.+..
T Consensus 9 ~iP~~l~~L~~g~ 21 (44)
T PF05725_consen 9 SIPSSLKSLIFGS 21 (44)
T ss_pred eeCCCCeEEEECC
Confidence 4466677777733
No 93
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=24.31 E-value=37 Score=34.87 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.6
Q ss_pred hccCCchhhHHHHhhh
Q 037759 31 AYCMLPFYLKLCCLYL 46 (479)
Q Consensus 31 SY~~L~~~~K~cfl~~ 46 (479)
|||+|..+.|.|+||+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999963
No 94
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=24.31 E-value=2e+02 Score=19.93 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCceeeeecCCCCCeeEEEe
Q 037759 76 ATAERYLEQLINGGFVDAGKRGVRGRINTCSI 107 (479)
Q Consensus 76 ~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~m 107 (479)
..+...++.|+++++++......+++...++.
T Consensus 33 ~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 33 STVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 34557899999999999988877777555543
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=22.42 E-value=8.8 Score=39.54 Aligned_cols=107 Identities=21% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhC----cCCceeEEEecCCcCcc-----Cchhhccccc-CCeeecCCCCCcc---
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYK----MFKFLRVLDLGSLVLIR-----YPSEIEYVFL-LRYLNLNIPSLKS--- 225 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~----~l~~L~~L~L~~~~l~~-----lp~~l~~L~~-L~~L~L~~~~l~~--- 225 (479)
...++.++++.|.....-.......+. ...++++|++++|.++. +-..+..... ++.|++..|.+..
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 455555555555532111122233333 46778888888877651 1123344444 5667777776542
Q ss_pred --CChhHHhcC-cCCcEEecCCCcccc-----cchhhhcCccCcEEEec
Q 037759 226 --LPSSLLNSL-LNLYTLDMPFSYIDH-----TADEFWKMSKLRYLNFG 266 (479)
Q Consensus 226 --lp~~i~~~l-~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~ 266 (479)
+.+.+ ..+ ..+++++++.|++.. +.+.+...+.++.+.++
T Consensus 251 ~~L~~~l-~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 251 EKLLPCL-SVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHHHh-cccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcc
Confidence 33333 445 567788888775543 34455666677777777
No 96
>PF13730 HTH_36: Helix-turn-helix domain
Probab=22.12 E-value=2.4e+02 Score=18.71 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCchhhHHHHhhhcccCCC--cee-chhhHHHHHHhcCCCCCChHHHHHHHHHHHHhCCce
Q 037759 34 MLPFYLKLCCLYLSVFLVH--FEI-STKQSYQLWIAEGFIPNNNEATAERYLEQLINGGFV 91 (479)
Q Consensus 34 ~L~~~~K~cfl~~a~fp~~--~~i-~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll 91 (479)
+|++..|..+.+++-|..+ ..+ +.+.+... . |. + +.+...++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~-~--g~---s-~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKD-L--GV---S-RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHH-H--Cc---C-HHHHHHHHHHHHHCcCC
Confidence 5777788888887655422 122 23333222 1 22 2 56677889999998875
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.09 E-value=60 Score=40.41 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=21.2
Q ss_pred EecCCcCccCch-hhcccccCCeeecCCCCCc
Q 037759 194 DLGSLVLIRYPS-EIEYVFLLRYLNLNIPSLK 224 (479)
Q Consensus 194 ~L~~~~l~~lp~-~l~~L~~L~~L~L~~~~l~ 224 (479)
||++|+|..+|. .|..|.+|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 467777777764 4566777777777776544
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.23 E-value=68 Score=33.27 Aligned_cols=85 Identities=19% Similarity=-0.016 Sum_probs=51.3
Q ss_pred HHhCcCCceeEEEecCCcCccCc---hhhcccccCCeeecCCC--CCccCChhHHhcCcCCcEEecCCCcccc-c--ch-
Q 037759 182 KIYKMFKFLRVLDLGSLVLIRYP---SEIEYVFLLRYLNLNIP--SLKSLPSSLLNSLLNLYTLDMPFSYIDH-T--AD- 252 (479)
Q Consensus 182 ~~~~~l~~L~~L~L~~~~l~~lp---~~l~~L~~L~~L~L~~~--~l~~lp~~i~~~l~~L~~L~l~~~~l~~-l--p~- 252 (479)
-+-.+.+.+..++|++|++..+- .--..-++|..|+|++| .+...++----+...|++|-+.+|.+.+ . +.
T Consensus 212 ~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 212 HIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred HhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 34467788888999999876442 22224578999999998 4443322110234557888888884432 1 11
Q ss_pred hh----hcCccCcEEEec
Q 037759 253 EF----WKMSKLRYLNFG 266 (479)
Q Consensus 253 ~~----~~L~~L~~L~l~ 266 (479)
-+ ...|+|..|+-.
T Consensus 292 yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHHHhcchheeecCc
Confidence 12 357777777643
Done!