Query 037759
Match_columns 479
No_of_seqs 309 out of 3220
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 5.3E-25 1.8E-29 219.9 16.5 276 159-454 44-350 (390)
2 2id5_A Lingo-1, leucine rich r 99.9 3.4E-24 1.1E-28 219.9 18.7 296 142-454 15-331 (477)
3 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.5E-24 8.5E-29 225.4 17.5 125 327-454 350-508 (562)
4 3rgz_A Protein brassinosteroid 99.9 7.2E-25 2.5E-29 237.7 12.5 309 159-478 317-765 (768)
5 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-24 2.8E-28 219.3 19.4 300 138-454 21-479 (520)
6 3oja_B Anopheles plasmodium-re 99.9 3.1E-24 1E-28 226.2 16.2 276 159-454 50-356 (597)
7 3v47_A TOLL-like receptor 5B a 99.9 7.1E-24 2.4E-28 216.0 18.1 306 136-454 28-406 (455)
8 4fmz_A Internalin; leucine ric 99.9 3.1E-23 1E-27 203.7 19.0 287 136-454 42-344 (347)
9 3vq2_A TLR4, TOLL-like recepto 99.9 4.4E-23 1.5E-27 217.9 19.2 193 136-338 30-237 (606)
10 4eco_A Uncharacterized protein 99.9 1.4E-23 4.6E-28 222.7 15.0 302 136-454 204-598 (636)
11 4ecn_A Leucine-rich repeat pro 99.9 2.3E-23 8E-28 225.7 16.9 303 135-454 445-838 (876)
12 3t6q_A CD180 antigen; protein- 99.9 6.7E-23 2.3E-27 216.5 20.1 61 136-201 127-192 (606)
13 3rgz_A Protein brassinosteroid 99.9 5.8E-24 2E-28 230.6 12.0 310 136-454 245-691 (768)
14 4eco_A Uncharacterized protein 99.9 3.4E-23 1.2E-27 219.7 17.6 302 136-454 247-630 (636)
15 3vq2_A TLR4, TOLL-like recepto 99.9 8.5E-23 2.9E-27 215.7 20.1 113 133-251 51-169 (606)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-22 5.5E-27 211.0 21.0 304 138-454 26-421 (549)
17 1o6v_A Internalin A; bacterial 99.9 1.8E-22 6.3E-27 206.3 20.5 294 137-454 45-386 (466)
18 4ecn_A Leucine-rich repeat pro 99.9 1.3E-22 4.6E-27 219.8 20.0 283 136-434 489-841 (876)
19 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-22 6.5E-27 210.5 19.2 306 132-454 44-508 (549)
20 4fmz_A Internalin; leucine ric 99.9 2.6E-22 8.9E-27 197.0 18.5 268 159-454 43-322 (347)
21 1o6v_A Internalin A; bacterial 99.9 2.7E-22 9.1E-27 205.1 18.5 272 159-454 45-364 (466)
22 2z63_A TOLL-like receptor 4, v 99.9 3.8E-22 1.3E-26 209.0 19.6 128 324-454 367-529 (570)
23 2z63_A TOLL-like receptor 4, v 99.9 8.8E-23 3E-27 213.9 13.7 131 137-275 27-163 (570)
24 3t6q_A CD180 antigen; protein- 99.9 5.6E-22 1.9E-26 209.4 20.0 95 358-454 400-511 (606)
25 1ziw_A TOLL-like receptor 3; i 99.9 2.3E-22 7.7E-27 215.4 16.7 305 137-454 24-441 (680)
26 1ziw_A TOLL-like receptor 3; i 99.9 3E-22 1E-26 214.4 16.4 301 142-454 8-364 (680)
27 3j0a_A TOLL-like receptor 5; m 99.9 2E-21 6.8E-26 212.8 22.3 302 136-454 22-437 (844)
28 4fcg_A Uncharacterized protein 99.9 3.1E-22 1.1E-26 194.9 13.1 228 186-453 79-311 (328)
29 3o6n_A APL1; leucine-rich repe 99.9 2.7E-21 9.2E-26 193.0 20.2 256 186-454 43-329 (390)
30 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-21 4.7E-26 214.0 18.3 186 142-339 8-213 (844)
31 3bz5_A Internalin-J, INLJ; leu 99.9 7.1E-21 2.4E-25 193.6 21.1 285 136-454 40-350 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 9.2E-22 3.1E-26 200.4 14.2 292 148-454 19-382 (455)
33 2z7x_B TOLL-like receptor 1, v 99.9 4.3E-21 1.5E-25 198.9 15.7 140 141-291 3-147 (520)
34 2z80_A TOLL-like receptor 2, v 99.9 9.5E-21 3.2E-25 186.4 17.0 262 143-454 36-312 (353)
35 3oja_B Anopheles plasmodium-re 99.9 1.8E-20 6E-25 197.5 19.9 256 186-454 49-335 (597)
36 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-21 1.4E-25 187.3 13.6 284 139-454 34-331 (332)
37 2id5_A Lingo-1, leucine rich r 99.8 3.4E-21 1.2E-25 197.4 13.6 277 137-430 31-331 (477)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.9E-21 3.4E-25 198.1 16.9 140 140-291 33-178 (562)
39 3bz5_A Internalin-J, INLJ; leu 99.8 2.4E-20 8.2E-25 189.7 19.1 262 159-454 41-329 (457)
40 1xku_A Decorin; proteoglycan, 99.8 2.6E-20 8.9E-25 181.5 16.2 287 139-453 32-329 (330)
41 4fcg_A Uncharacterized protein 99.8 6.9E-21 2.4E-25 185.4 10.4 122 138-266 81-214 (328)
42 1ogq_A PGIP-2, polygalacturona 99.8 2.8E-21 9.5E-26 187.0 6.7 123 138-266 50-182 (313)
43 4g8a_A TOLL-like receptor 4; l 99.8 3E-19 1E-23 189.1 21.1 131 137-275 51-187 (635)
44 1jl5_A Outer protein YOPM; leu 99.8 2.4E-19 8.3E-24 182.1 19.5 279 137-454 90-407 (454)
45 3zyi_A Leucine-rich repeat-con 99.8 8.6E-20 2.9E-24 185.8 14.5 240 140-395 56-303 (452)
46 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.8E-24 184.2 14.3 239 140-394 45-291 (440)
47 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-20 1.3E-24 179.0 10.1 243 160-436 50-308 (313)
48 4g8a_A TOLL-like receptor 4; l 99.8 4.3E-19 1.5E-23 187.9 16.8 116 130-251 68-189 (635)
49 2ft3_A Biglycan; proteoglycan, 99.8 2.4E-19 8.2E-24 174.8 12.4 263 137-430 53-331 (332)
50 1xku_A Decorin; proteoglycan, 99.8 1.4E-18 4.8E-23 169.2 17.8 263 137-429 51-329 (330)
51 1jl5_A Outer protein YOPM; leu 99.8 2.9E-18 9.9E-23 174.2 20.1 276 139-454 72-368 (454)
52 2z66_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 174.6 9.2 164 142-315 11-186 (306)
53 2z66_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 170.3 11.8 221 188-454 28-259 (306)
54 3ogk_B Coronatine-insensitive 99.8 2.6E-18 8.9E-23 180.7 15.2 306 137-454 111-524 (592)
55 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-17 6.3E-22 173.8 20.6 253 139-454 41-295 (622)
56 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-18 5.9E-23 176.4 11.6 306 138-454 3-409 (461)
57 1ozn_A Reticulon 4 receptor; N 99.7 3.9E-18 1.3E-22 162.5 11.9 215 141-394 14-237 (285)
58 2z80_A TOLL-like receptor 2, v 99.7 8.6E-18 2.9E-22 165.2 12.6 171 137-315 51-233 (353)
59 3o53_A Protein LRIM1, AGAP0063 99.7 2.8E-18 9.6E-23 166.1 8.9 223 176-454 22-248 (317)
60 3zyj_A Leucine-rich repeat-con 99.7 1.7E-17 5.7E-22 168.2 14.2 218 188-454 64-290 (440)
61 3zyi_A Leucine-rich repeat-con 99.7 2.6E-17 9E-22 167.3 14.1 217 188-454 75-301 (452)
62 1ozn_A Reticulon 4 receptor; N 99.7 7.3E-17 2.5E-21 153.6 12.7 193 136-339 30-234 (285)
63 2o6q_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 153.4 11.6 146 138-291 16-166 (270)
64 1wwl_A Monocyte differentiatio 99.7 1.1E-17 3.7E-22 161.7 6.5 79 358-454 228-307 (312)
65 2z62_A TOLL-like receptor 4, v 99.7 7.5E-17 2.6E-21 152.8 11.2 211 151-393 19-235 (276)
66 3oja_A Leucine-rich immune mol 99.7 4.8E-17 1.7E-21 166.7 10.5 212 187-454 33-248 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.7 3.7E-18 1.3E-22 165.3 0.2 233 159-454 33-273 (317)
68 2p1m_B Transport inhibitor res 99.7 1.3E-16 4.6E-21 167.6 11.6 308 137-455 104-518 (594)
69 1z7x_W Ribonuclease inhibitor; 99.7 3.7E-17 1.3E-21 166.5 6.3 305 137-454 27-438 (461)
70 1p9a_G Platelet glycoprotein I 99.7 3.1E-16 1.1E-20 149.6 11.7 200 184-454 6-206 (290)
71 2z62_A TOLL-like receptor 4, v 99.6 5.7E-16 2E-20 146.7 12.3 201 188-452 28-233 (276)
72 3rfs_A Internalin B, repeat mo 99.6 1.9E-16 6.5E-21 149.7 9.0 101 159-266 40-141 (272)
73 3oja_A Leucine-rich immune mol 99.6 2.3E-17 7.9E-22 169.1 2.2 232 159-450 33-269 (487)
74 1h6u_A Internalin H; cell adhe 99.6 6.4E-16 2.2E-20 148.8 12.1 119 159-290 40-159 (308)
75 3g06_A SSPH2 (leucine-rich rep 99.6 5.6E-15 1.9E-19 155.0 19.6 229 161-454 41-272 (622)
76 3ogk_B Coronatine-insensitive 99.6 5.2E-16 1.8E-20 163.1 11.3 285 159-454 111-499 (592)
77 2o6q_A Variable lymphocyte rec 99.6 2.2E-15 7.4E-20 142.3 14.2 120 161-290 17-141 (270)
78 1p9a_G Platelet glycoprotein I 99.6 9.7E-16 3.3E-20 146.2 11.6 170 136-315 8-183 (290)
79 2xwt_C Thyrotropin receptor; s 99.6 4.2E-16 1.4E-20 144.4 8.3 110 151-266 23-138 (239)
80 1h6u_A Internalin H; cell adhe 99.6 2.4E-15 8.2E-20 144.8 12.8 192 136-374 39-233 (308)
81 3m19_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 138.7 12.1 168 139-315 15-190 (251)
82 3rfs_A Internalin B, repeat mo 99.6 4.1E-15 1.4E-19 140.5 11.6 145 136-290 39-189 (272)
83 2p1m_B Transport inhibitor res 99.6 2.6E-16 8.8E-21 165.5 3.0 284 159-455 104-493 (594)
84 4ay9_X Follicle-stimulating ho 99.6 1.2E-14 4.3E-19 142.4 11.3 119 143-266 14-136 (350)
85 1wwl_A Monocyte differentiatio 99.5 1.9E-15 6.5E-20 145.8 4.6 193 186-395 93-309 (312)
86 2ca6_A RAN GTPase-activating p 99.5 2.1E-15 7.2E-20 150.0 4.8 183 159-371 31-257 (386)
87 4glp_A Monocyte differentiatio 99.5 3.1E-14 1.1E-18 137.2 12.5 229 159-454 63-305 (310)
88 1h6t_A Internalin B; cell adhe 99.5 1.7E-14 5.9E-19 137.6 10.4 171 159-375 45-217 (291)
89 2ast_B S-phase kinase-associat 99.5 1.7E-15 5.9E-20 147.5 3.3 127 138-272 70-206 (336)
90 2ca6_A RAN GTPase-activating p 99.5 7.6E-15 2.6E-19 145.9 7.9 209 137-372 31-288 (386)
91 1m9s_A Internalin B; cell inva 99.5 2.1E-14 7.2E-19 150.4 11.3 180 159-382 42-221 (605)
92 2ast_B S-phase kinase-associat 99.5 6.8E-15 2.3E-19 143.3 6.7 226 160-435 70-308 (336)
93 2o6s_A Variable lymphocyte rec 99.5 6.5E-15 2.2E-19 133.3 5.4 141 142-290 11-156 (208)
94 2xwt_C Thyrotropin receptor; s 99.5 1.5E-14 5E-19 133.9 7.6 169 137-315 30-216 (239)
95 3e6j_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 128.6 11.8 126 142-275 23-149 (229)
96 2v9t_B SLIT homolog 2 protein 99.5 4.8E-14 1.7E-18 128.7 10.3 126 142-275 15-142 (220)
97 3goz_A Leucine-rich repeat-con 99.5 1.1E-14 3.9E-19 143.4 6.4 88 179-266 13-117 (362)
98 1h6t_A Internalin B; cell adhe 99.5 1.9E-13 6.6E-18 130.3 14.3 164 136-314 44-210 (291)
99 3m19_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 128.2 11.5 147 137-291 34-188 (251)
100 2v70_A SLIT-2, SLIT homolog 2 99.5 1.5E-13 5.1E-18 125.5 10.6 147 142-315 15-164 (220)
101 4ay9_X Follicle-stimulating ho 99.4 1.6E-13 5.4E-18 134.5 9.6 218 188-452 30-255 (350)
102 2a5y_B CED-4; apoptosis; HET: 99.4 1.6E-14 5.4E-19 150.1 2.1 95 21-123 360-472 (549)
103 1m9s_A Internalin B; cell inva 99.4 6.8E-14 2.3E-18 146.5 6.3 171 184-394 39-209 (605)
104 4ezg_A Putative uncharacterize 99.4 5.3E-13 1.8E-17 119.6 11.0 147 136-315 42-192 (197)
105 2ell_A Acidic leucine-rich nuc 99.4 5.1E-13 1.7E-17 116.4 9.3 128 137-275 23-161 (168)
106 2xot_A Amphoterin-induced prot 99.4 2.6E-13 8.8E-18 133.6 8.0 166 141-315 21-200 (361)
107 4ezg_A Putative uncharacterize 99.4 2.6E-12 9E-17 115.0 13.4 128 134-272 62-192 (197)
108 4glp_A Monocyte differentiatio 99.4 9.7E-13 3.3E-17 126.6 10.6 179 159-372 116-308 (310)
109 1xeu_A Internalin C; cellular 99.4 8.5E-13 2.9E-17 123.9 9.3 152 184-374 37-188 (263)
110 3goz_A Leucine-rich repeat-con 99.4 4.3E-13 1.5E-17 132.1 7.4 109 159-274 21-151 (362)
111 3cvr_A Invasion plasmid antige 99.4 3E-12 1E-16 132.7 14.0 69 189-266 60-128 (571)
112 2v9t_B SLIT homolog 2 protein 99.4 1.2E-12 4.2E-17 119.3 9.6 128 137-272 31-163 (220)
113 1xeu_A Internalin C; cellular 99.4 2.9E-12 9.8E-17 120.3 12.3 142 159-315 40-183 (263)
114 3e6j_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 118.7 10.0 129 136-273 38-171 (229)
115 2o6s_A Variable lymphocyte rec 99.3 2.3E-12 8E-17 116.3 9.8 129 137-273 27-160 (208)
116 2je0_A Acidic leucine-rich nuc 99.3 8.1E-13 2.8E-17 112.6 6.3 122 137-266 16-148 (149)
117 4b8c_D Glucose-repressible alc 99.3 3.2E-12 1.1E-16 137.1 11.5 150 137-291 172-325 (727)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 2.7E-12 9.3E-17 117.0 9.2 128 137-272 31-164 (220)
119 2wfh_A SLIT homolog 2 protein 99.3 3.9E-12 1.3E-16 113.5 9.6 119 142-266 14-134 (193)
120 2o6r_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 111.8 9.3 126 141-274 10-137 (177)
121 1w8a_A SLIT protein; signaling 99.3 1.8E-12 6.3E-17 115.5 6.8 124 141-272 11-137 (192)
122 2ell_A Acidic leucine-rich nuc 99.3 2.8E-12 9.6E-17 111.6 7.7 105 159-272 23-131 (168)
123 1a9n_A U2A', U2A'; complex (nu 99.3 2.5E-12 8.5E-17 112.9 7.3 123 136-266 17-148 (176)
124 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.1E-17 109.7 6.9 78 187-266 16-96 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.3 2.7E-12 9.2E-17 112.7 5.7 131 159-315 18-151 (176)
126 4b8c_D Glucose-repressible alc 99.2 3.1E-12 1.1E-16 137.1 5.3 113 154-275 216-330 (727)
127 3cvr_A Invasion plasmid antige 99.2 2.1E-11 7E-16 126.4 11.2 187 139-382 60-254 (571)
128 2xot_A Amphoterin-induced prot 99.2 8.3E-12 2.8E-16 122.8 7.6 147 137-291 38-198 (361)
129 1dce_A Protein (RAB geranylger 99.2 2.5E-11 8.5E-16 126.2 10.0 116 189-310 442-566 (567)
130 1ds9_A Outer arm dynein; leuci 99.2 1.8E-12 6.1E-17 116.2 0.7 130 181-336 41-180 (198)
131 2wfh_A SLIT homolog 2 protein 99.2 4.3E-11 1.5E-15 106.6 9.3 105 188-315 31-137 (193)
132 1w8a_A SLIT protein; signaling 99.2 1E-10 3.5E-15 104.1 9.8 78 189-266 30-110 (192)
133 3sb4_A Hypothetical leucine ri 99.1 2.2E-10 7.5E-15 111.1 12.4 90 358-450 226-328 (329)
134 1dce_A Protein (RAB geranylger 99.1 9.7E-11 3.3E-15 121.8 10.1 158 151-314 361-543 (567)
135 2r9u_A Variable lymphocyte rec 99.1 5.6E-11 1.9E-15 104.0 6.9 79 188-266 33-113 (174)
136 2r9u_A Variable lymphocyte rec 99.1 9.5E-11 3.3E-15 102.5 7.0 111 141-256 15-126 (174)
137 3g39_A Variable lymphocyte rec 99.1 1.3E-10 4.6E-15 101.2 6.8 79 188-266 30-110 (170)
138 3g39_A Variable lymphocyte rec 99.1 1.2E-10 4E-15 101.5 6.4 107 141-252 12-119 (170)
139 2o6r_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 95.5 11.3 84 188-274 28-113 (177)
140 1ds9_A Outer arm dynein; leuci 99.0 5.5E-12 1.9E-16 113.0 -5.0 125 139-274 24-153 (198)
141 1vt4_I APAF-1 related killer D 99.0 2.7E-10 9.3E-15 122.2 6.0 84 21-115 352-436 (1221)
142 3sfz_A APAF-1, apoptotic pepti 99.0 9.1E-10 3.1E-14 125.4 9.8 92 21-122 361-452 (1249)
143 3sb4_A Hypothetical leucine ri 98.8 7.5E-10 2.6E-14 107.2 3.0 234 138-391 25-283 (329)
144 4fdw_A Leucine rich hypothetic 98.8 4.1E-08 1.4E-12 97.5 13.2 159 138-313 113-280 (401)
145 2ifg_A High affinity nerve gro 98.8 9.6E-09 3.3E-13 100.1 8.3 83 184-266 27-111 (347)
146 4fdw_A Leucine rich hypothetic 98.8 7.1E-08 2.4E-12 95.8 14.5 247 159-454 112-381 (401)
147 1z6t_A APAF-1, apoptotic prote 98.7 4.4E-08 1.5E-12 102.6 9.3 89 21-119 361-449 (591)
148 2ifg_A High affinity nerve gro 98.6 7.3E-08 2.5E-12 93.8 9.0 95 192-291 12-112 (347)
149 3un9_A NLR family member X1; l 98.6 3E-08 1E-12 97.5 5.3 104 159-266 71-191 (372)
150 3un9_A NLR family member X1; l 98.3 4.7E-07 1.6E-11 88.9 6.5 55 211-266 155-219 (372)
151 4fs7_A Uncharacterized protein 98.3 3.6E-06 1.2E-10 83.4 12.8 34 417-452 341-375 (394)
152 1io0_A Tropomodulin; LRR prote 98.2 2E-06 6.8E-11 75.6 5.9 107 159-266 35-159 (185)
153 4fs7_A Uncharacterized protein 98.1 1.1E-05 3.6E-10 79.9 10.8 270 159-448 70-393 (394)
154 2ra8_A Uncharacterized protein 98.0 1.1E-05 3.8E-10 78.6 7.2 148 205-378 166-327 (362)
155 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.6E-10 74.9 6.3 84 181-266 163-259 (267)
156 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.2E-11 73.4 2.0 84 358-454 61-150 (176)
157 3e4g_A ATP synthase subunit S, 97.8 1.9E-05 6.5E-10 68.0 6.0 82 159-245 60-149 (176)
158 1io0_A Tropomodulin; LRR prote 97.8 1.5E-05 5.1E-10 69.9 5.5 120 177-315 25-162 (185)
159 2ra8_A Uncharacterized protein 97.8 4.7E-05 1.6E-09 74.2 9.2 124 137-266 171-315 (362)
160 4gt6_A Cell surface protein; l 97.8 0.00022 7.6E-09 70.3 14.1 271 161-456 65-370 (394)
161 4gt6_A Cell surface protein; l 97.6 0.0013 4.4E-08 64.7 16.2 132 129-266 54-190 (394)
162 3rw6_A Nuclear RNA export fact 97.5 8.9E-05 3.1E-09 68.6 5.0 81 159-242 169-258 (267)
163 4h09_A Hypothetical leucine ri 97.0 0.0033 1.1E-07 61.3 11.3 10 159-168 68-77 (379)
164 3rfe_A Platelet glycoprotein I 96.7 0.0019 6.4E-08 52.8 5.2 55 191-247 11-67 (130)
165 4h09_A Hypothetical leucine ri 95.9 0.014 4.8E-07 56.8 7.3 101 159-266 216-318 (379)
166 1pgv_A TMD-1, tropomodulin TMD 95.3 0.019 6.7E-07 50.1 5.2 64 181-245 63-136 (197)
167 3rfe_A Platelet glycoprotein I 95.3 0.021 7.1E-07 46.4 5.1 53 214-272 11-66 (130)
168 1pgv_A TMD-1, tropomodulin TMD 94.2 0.093 3.2E-06 45.8 6.8 87 179-266 32-134 (197)
169 2lz0_A Uncharacterized protein 22.5 52 0.0018 24.5 2.6 44 222-266 7-51 (100)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=5.3e-25 Score=219.94 Aligned_cols=276 Identities=17% Similarity=0.169 Sum_probs=172.3
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNL 237 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L 237 (479)
.++++.|.+.++. ...++...|..+++|++|++++|.++.++ ..+..+++|++|++++|.+..+|+..|+++++|
T Consensus 44 l~~l~~l~l~~~~----l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCc----hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 5555666655554 34444455555666666666666655443 355556666666666666555554433566666
Q ss_pred cEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEe
Q 037759 238 YTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWG 313 (479)
Q Consensus 238 ~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 313 (479)
++|++++|.+..+|.. ++++++|++|+++ +|.... | .+..++.|+.+++.+....... ++.+++|+.|++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMS---NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECC---CCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccc
Confidence 6666666655555544 3556666666666 555444 2 3455555555555542222223 44555666666654
Q ss_pred CCccchHHHHHHhccCCCccEEEeecC-------CCCCCccEEEe---------ecccccCcceEEEEecccCCCCCccc
Q 037759 314 DLIYYQSLLSKILYRLSCLESLKLAKE-------SKIPRRSNIIL---------AKYQFPPSLTHLSFLNIELMDDPMPA 377 (479)
Q Consensus 314 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-------~~lp~L~~L~l---------~~~~lp~~L~~L~l~~~~l~~~~~~~ 377 (479)
+. .. .+...++|++|++++. ...++|+.|++ ++..+ ++|++|++++|.+.......
T Consensus 196 n~--l~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 196 NL--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp SC--CS-----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGG
T ss_pred cc--cc-----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC-CCccEEECCCCcCCCcChhH
Confidence 43 11 1233345566655541 12245555555 45566 88999999999887666667
Q ss_pred cccCccCceEEeccC----------CCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCE
Q 037759 378 LEKLAVLRKLACSSD----------GFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNK 447 (479)
Q Consensus 378 l~~l~~L~~l~~~~~----------~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 447 (479)
++.+++|+.++++.+ .+++|+.|+++++ .+..++...+.+++|+.|++.+| .++.+| +..+++|+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~ 343 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKN 343 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSE
T ss_pred ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC--chhhccCCE
Confidence 888899998887654 3688999999886 46666655567899999999995 577776 678899999
Q ss_pred EEeeCCc
Q 037759 448 LELWWPE 454 (479)
Q Consensus 448 L~l~~c~ 454 (479)
|++++++
T Consensus 344 L~l~~N~ 350 (390)
T 3o6n_A 344 LTLSHND 350 (390)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9999987
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.4e-24 Score=219.88 Aligned_cols=296 Identities=19% Similarity=0.152 Sum_probs=227.4
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeecCC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNI 220 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~ 220 (479)
.+... +.....+|..+.++++.|.+.++. +..+.+..|.++++|++|+|++|.++.+ |..+.++++|++|++++
T Consensus 15 ~v~c~-~~~l~~ip~~~~~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCH-RKRFVAVPEGIPTETRLLDLGKNR----IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECC-SCCCSSCCSCCCTTCSEEECCSSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeC-CCCcCcCCCCCCCCCcEEECCCCc----cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45555 555666887778899999999998 6667778899999999999999999866 78899999999999999
Q ss_pred CCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCC---C
Q 037759 221 PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHP---C 293 (479)
Q Consensus 221 ~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~---~ 293 (479)
|.++.+|...|+++++|++|++++|.+..++ ..+..+++|++|+++ +|.... | .+.++.+|+.+++.+. .
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG---DNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC---CTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC---CCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 9999999876699999999999999888774 568999999999999 887766 5 7778888888888752 1
Q ss_pred CChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCC
Q 037759 294 CCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDD 373 (479)
Q Consensus 294 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~ 373 (479)
..... +..+++|+.|++.++. ........+..+++|++|++++...+ ..+.-..... .+|+.|++++|.++..
T Consensus 167 ~~~~~-l~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~-~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 167 IPTEA-LSHLHGLIVLRLRHLN--INAIRDYSFKRLYRLKVLEISHWPYL---DTMTPNCLYG-LNLTSLSITHCNLTAV 239 (477)
T ss_dssp CCHHH-HTTCTTCCEEEEESCC--CCEECTTCSCSCTTCCEEEEECCTTC---CEECTTTTTT-CCCSEEEEESSCCCSC
T ss_pred cChhH-hcccCCCcEEeCCCCc--CcEeChhhcccCcccceeeCCCCccc---cccCcccccC-ccccEEECcCCccccc
Confidence 22334 7888999999999766 44444456777888999888762221 0000011122 5788888888888766
Q ss_pred CccccccCccCceEEeccCC-----------CCCcceEeeccCCCCCeeE-EcCCCCCCccEeEEecCCCCCCCcc-ccc
Q 037759 374 PMPALEKLAVLRKLACSSDG-----------FPKLKVLHLKSMLWLQEWT-MGIRAMPKLECSILNPCAHLKMIPE-QLW 440 (479)
Q Consensus 374 ~~~~l~~l~~L~~l~~~~~~-----------~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~lp~-~l~ 440 (479)
+...+..+++|+.|+++.+. +++|+.|.+.++ .+..+. .....+++|+.|++++| .++.+|. .+.
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 317 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFH 317 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBS
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcC
Confidence 65667888888888876542 567888888875 355542 34467899999999995 7888875 567
Q ss_pred CCCCCCEEEeeCCc
Q 037759 441 CLKSLNKLELWWPE 454 (479)
Q Consensus 441 ~l~~L~~L~l~~c~ 454 (479)
.+++|+.|++++++
T Consensus 318 ~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 318 SVGNLETLILDSNP 331 (477)
T ss_dssp CGGGCCEEECCSSC
T ss_pred CCcccCEEEccCCC
Confidence 89999999998765
No 3
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.5e-24 Score=225.43 Aligned_cols=125 Identities=21% Similarity=0.170 Sum_probs=94.6
Q ss_pred ccCCCccEEEeecC---C----C---CCCccEEEe-------------ecccccCcceEEEEecccCCC-CCccccccCc
Q 037759 327 YRLSCLESLKLAKE---S----K---IPRRSNIIL-------------AKYQFPPSLTHLSFLNIELMD-DPMPALEKLA 382 (479)
Q Consensus 327 ~~l~~L~~L~l~~~---~----~---lp~L~~L~l-------------~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~ 382 (479)
..+++|++|++++. + . +++|+.|++ .+..+ ++|+.|++++|.+.. .+...+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcc
Confidence 45567777777661 1 1 246777766 13455 788888888888765 4444577788
Q ss_pred cCceEEeccCCC---------CCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCccc-ccCCCCCCEEEeeC
Q 037759 383 VLRKLACSSDGF---------PKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQ-LWCLKSLNKLELWW 452 (479)
Q Consensus 383 ~L~~l~~~~~~~---------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 452 (479)
+|+.++++.+.+ ++|+.|+++++ .++.++.....+++|+.|++++| .++.+|.. +..+++|+.|++++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCS
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecC
Confidence 888888877665 68999999886 67788777778999999999994 78899976 88999999999998
Q ss_pred Cc
Q 037759 453 PE 454 (479)
Q Consensus 453 c~ 454 (479)
++
T Consensus 507 N~ 508 (562)
T 3a79_B 507 NP 508 (562)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=7.2e-25 Score=237.66 Aligned_cols=309 Identities=16% Similarity=0.078 Sum_probs=172.1
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cCchhhcccc-cCCeeecCCCCCc-cCChhHHhc--
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RYPSEIEYVF-LLRYLNLNIPSLK-SLPSSLLNS-- 233 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~l~~L~-~L~~L~L~~~~l~-~lp~~i~~~-- 233 (479)
+++|+.|.+.+|.. ...++...+..+++|++|++++|.+. .+|..+.++. +|++|++++|.+. .+|..+ +.
T Consensus 317 l~~L~~L~L~~n~l---~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~~~ 392 (768)
T 3rgz_A 317 CSLLESLALSSNNF---SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNP 392 (768)
T ss_dssp CTTCCEEECCSSEE---EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TCST
T ss_pred CCCccEEECCCCcc---cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hhcc
Confidence 44444444444431 11233334555555555555555544 4455554444 4444444444433 233333 33
Q ss_pred CcCCcEEecCCCccc-ccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCC---CCCChhhhcCCCCCC
Q 037759 234 LLNLYTLDMPFSYID-HTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALH---PCCCPEDILGRLPNL 306 (479)
Q Consensus 234 l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L 306 (479)
+++|++|++++|.+. .+|..++++++|++|+++ +|.... | .+++++.|+.+++.+ ....+.. ++.+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls---~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS---FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC---SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECc---CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCc
Confidence 445555555555443 456666777777777777 665554 5 666666666666654 2233444 6667777
Q ss_pred CeEEEEeCCccchHHHHHHhccCCCccEEEeecCC---C-------CCCccEEEe-----------ecccccCcceEEEE
Q 037759 307 QNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKES---K-------IPRRSNIIL-----------AKYQFPPSLTHLSF 365 (479)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~-------lp~L~~L~l-----------~~~~lp~~L~~L~l 365 (479)
+.|++++|. .....+..+..+++|++|+++++. . +++|+.|++ .+..+ ++|+.|++
T Consensus 469 ~~L~L~~N~--l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L 545 (768)
T 3rgz_A 469 ETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDL 545 (768)
T ss_dssp CEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEEC
T ss_pred eEEEecCCc--ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEEC
Confidence 777777665 554555666677777777776611 1 146666666 34456 77778888
Q ss_pred ecccCCCCCcc---------------------------------------------------------------------
Q 037759 366 LNIELMDDPMP--------------------------------------------------------------------- 376 (479)
Q Consensus 366 ~~~~l~~~~~~--------------------------------------------------------------------- 376 (479)
++|.+......
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 77765421111
Q ss_pred -ccccCccCceEEeccCC-----------CCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCC
Q 037759 377 -ALEKLAVLRKLACSSDG-----------FPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKS 444 (479)
Q Consensus 377 -~l~~l~~L~~l~~~~~~-----------~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~ 444 (479)
.++.+++|+.++++.+. +++|+.|+++++.--..+|...+.+++|+.|++++|.--..+|..+..+++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 12335566677766543 457778888776433466666778889999999986544578888889999
Q ss_pred CCEEEeeCCcHH-----------H---------------HHHhhhccccceeeeecCCCC
Q 037759 445 LNKLELWWPELE-----------L---------------RQQLREFEDKEQYGIQLYPYG 478 (479)
Q Consensus 445 L~~L~l~~c~~~-----------~---------------~~~~~~~~~~~~~~i~~ip~~ 478 (479)
|+.|++++|+-. + ...|....+++|.+|+|+|.+
T Consensus 706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred CCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 999998876410 0 013555678999999999975
No 5
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.3e-24 Score=219.32 Aligned_cols=300 Identities=17% Similarity=0.157 Sum_probs=201.5
Q ss_pred CCeEEEEEEcCCCCcccc-ccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCC
Q 037759 138 ENVKRFTVHGNLNDFEFL-DHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLR 214 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~ 214 (479)
+.++++.+. ++....++ ..+ +++|+.|.+.+|. +....+..|.++++|++|++++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNIS-QNYISELWTSDILSLSKLRILIISHNR----IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSC----CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECC-CCcccccChhhccccccccEEecCCCc----cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 678888888 55555454 344 7888888888887 5556667788888888888888888877766 788888
Q ss_pred eeecCCCCCcc--CChhHHhcCcCCcEEecCCCcccccchhhhcCccC--cEEEeccCCCCCC--CC--C-CCCC-----
Q 037759 215 YLNLNIPSLKS--LPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKL--RYLNFGSITLSAH--PG--K-YCGS----- 280 (479)
Q Consensus 215 ~L~L~~~~l~~--lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L--~~L~l~~~~~~~~--~~--p-~i~~----- 280 (479)
+|++++|.++. +|..+ +++++|++|++++|.+.. ..+..+++| ++|+++ +|.. .. | .+..
T Consensus 94 ~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~---~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLV---LGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp EEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEE---ECTTTTSSCCTTTTTTCCEEE
T ss_pred EEeccCCccccccchhhh-ccCCcceEEEecCcccch--hhccccccceeeEEEee---cccccccccccccccccccce
Confidence 88888888775 45666 888888888888887665 346777777 888888 7765 22 4 4433
Q ss_pred ---------------------CcccCeeecCCC-----------------------------------------------
Q 037759 281 ---------------------LENLDFISALHP----------------------------------------------- 292 (479)
Q Consensus 281 ---------------------L~~L~~l~~~~~----------------------------------------------- 292 (479)
++.|+.+++...
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 223333222211
Q ss_pred -------------CCChhhhc-----CCCCCCCeEEEEeCCccch-HHHHHH---------------------hccCCCc
Q 037759 293 -------------CCCPEDIL-----GRLPNLQNIQIWGDLIYYQ-SLLSKI---------------------LYRLSCL 332 (479)
Q Consensus 293 -------------~~~~~~~l-----~~l~~L~~L~l~~~~~~~~-~~~~~~---------------------l~~l~~L 332 (479)
+..+.. + +.+++|+.+++.++..... ..+... ...+++|
T Consensus 248 ~L~~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp SCSEEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred cccEEEeecccccCccccc-hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 011122 2 3444444444443320000 111111 0456677
Q ss_pred cEEEeecC---C----C---CCCccEEEe-------------ecccccCcceEEEEecccCCC-CCccccccCccCceEE
Q 037759 333 ESLKLAKE---S----K---IPRRSNIIL-------------AKYQFPPSLTHLSFLNIELMD-DPMPALEKLAVLRKLA 388 (479)
Q Consensus 333 ~~L~l~~~---~----~---lp~L~~L~l-------------~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~l~ 388 (479)
++|++++. + . +++|+.|++ .+..+ ++|++|++++|.+.. .+...+..+++|+.++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 77777661 1 1 146777776 13456 788888888888765 3333467788888888
Q ss_pred eccCCC---------CCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCccc-ccCCCCCCEEEeeCCc
Q 037759 389 CSSDGF---------PKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQ-LWCLKSLNKLELWWPE 454 (479)
Q Consensus 389 ~~~~~~---------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 454 (479)
++.+.+ ++|+.|+++++ ++..++.....+++|+.|++++| .++.+|.. +..+++|+.|++++++
T Consensus 406 Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 406 MSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 877655 68999999886 56777766668999999999996 78899976 8889999999999865
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.1e-24 Score=226.24 Aligned_cols=276 Identities=17% Similarity=0.171 Sum_probs=203.2
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNL 237 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L 237 (479)
+++++.+.+.++. +..+++..|..+++|++|++++|.++.+| ..++.+++|++|++++|.+..+|+..|+++++|
T Consensus 50 l~~l~~l~l~~~~----l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCC----CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 6777777777776 55566677777888888888888877654 477778888888888888777776655778888
Q ss_pred cEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEe
Q 037759 238 YTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWG 313 (479)
Q Consensus 238 ~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 313 (479)
++|++++|.+..+|.. ++++++|++|+++ +|.... | .+++++.|+.+++.++...... ++.+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMS---NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEee---CCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhccc
Confidence 8888888877777765 4778888888888 776666 4 5667777777777763322223 55677778877776
Q ss_pred CCccchHHHHHHhccCCCccEEEeecCC-------CCCCccEEEe---------ecccccCcceEEEEecccCCCCCccc
Q 037759 314 DLIYYQSLLSKILYRLSCLESLKLAKES-------KIPRRSNIIL---------AKYQFPPSLTHLSFLNIELMDDPMPA 377 (479)
Q Consensus 314 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~lp~L~~L~l---------~~~~lp~~L~~L~l~~~~l~~~~~~~ 377 (479)
+. .. .+...++|+.|++++.. ..++|+.|++ ++..+ ++|+.|++++|.+.......
T Consensus 202 n~--l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 202 NL--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SC--CS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGG
T ss_pred Cc--cc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHH
Confidence 54 21 23445677777776622 2246777776 45677 89999999999987776677
Q ss_pred cccCccCceEEeccCC----------CCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCE
Q 037759 378 LEKLAVLRKLACSSDG----------FPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNK 447 (479)
Q Consensus 378 l~~l~~L~~l~~~~~~----------~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 447 (479)
++.+++|+.|+++.+. +++|+.|+++++ .+..++...+.+++|+.|++++| .++.+| +..+++|+.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~ 349 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKN 349 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSE
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcC--hhhcCCCCE
Confidence 8889999988887643 688999999886 45666655567899999999996 577775 677899999
Q ss_pred EEeeCCc
Q 037759 448 LELWWPE 454 (479)
Q Consensus 448 L~l~~c~ 454 (479)
|++++|+
T Consensus 350 L~l~~N~ 356 (597)
T 3oja_B 350 LTLSHND 356 (597)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 9999987
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=7.1e-24 Score=216.03 Aligned_cols=306 Identities=17% Similarity=0.163 Sum_probs=235.5
Q ss_pred CCCCeEEEEEEcCCCCccc-cccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccc
Q 037759 136 LWENVKRFTVHGNLNDFEF-LDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVF 211 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~ 211 (479)
.++.++++.+. ++....+ +..+ +++|+.|.+.++.. ...+.+..|.++++|++|++++|.+..+ |..+++++
T Consensus 28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~---~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCST---TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEec-CCccCcCChhHhccCccccEEECcCCcc---cceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 34779999999 6655555 5566 99999999999974 3345567899999999999999999865 78899999
Q ss_pred cCCeeecCCCCCcc-CChh-HHhcCcCCcEEecCCCccccc-chh-hhcCccCcEEEeccCCCCCCCC--C-CCCCC--c
Q 037759 212 LLRYLNLNIPSLKS-LPSS-LLNSLLNLYTLDMPFSYIDHT-ADE-FWKMSKLRYLNFGSITLSAHPG--K-YCGSL--E 282 (479)
Q Consensus 212 ~L~~L~L~~~~l~~-lp~~-i~~~l~~L~~L~l~~~~l~~l-p~~-~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L--~ 282 (479)
+|++|++++|.++. +|.. .|+++++|++|++++|.+..+ |.. +.++++|++|+++ +|.... | .+..+ .
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT---FNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT---TCCBSCCCTTTSGGGTTC
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC---CCcccccChhhhhccccc
Confidence 99999999999885 3443 238999999999999988887 554 8999999999999 888766 4 66544 5
Q ss_pred ccCeeecCCCCC-C----------hhhhcCCCCCCCeEEEEeCCccchHHHHHHhccC---CCccEEEeecCCC------
Q 037759 283 NLDFISALHPCC-C----------PEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRL---SCLESLKLAKESK------ 342 (479)
Q Consensus 283 ~L~~l~~~~~~~-~----------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~------ 342 (479)
.|+.+++.+... . ... +..+++|+.|+++++. .....+..+... ++|+.|.+++...
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGN-PFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCC-TTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred cccccccccCcccccchhhcccccccc-ccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccc
Confidence 677777765111 0 011 3356889999999887 666666665544 7888888875100
Q ss_pred ----------------CCCccEEEe-----------ecccccCcceEEEEecccCCCCCccccccCccCceEEeccC---
Q 037759 343 ----------------IPRRSNIIL-----------AKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSD--- 392 (479)
Q Consensus 343 ----------------lp~L~~L~l-----------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~--- 392 (479)
.++|+.|++ ++..+ ++|++|++++|.+.......++.+++|+.|+++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 036777777 35567 89999999999988777778889999999988763
Q ss_pred --------CCCCcceEeeccCCCCCee-EEcCCCCCCccEeEEecCCCCCCCcc-cccCCCCCCEEEeeCCc
Q 037759 393 --------GFPKLKVLHLKSMLWLQEW-TMGIRAMPKLECSILNPCAHLKMIPE-QLWCLKSLNKLELWWPE 454 (479)
Q Consensus 393 --------~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 454 (479)
.+++|+.|+++++ .+..+ +...+.+++|+.|++.+| .++.+|. .+..+++|+.|++++++
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 3678999999886 45555 334567899999999995 7888875 45789999999998754
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=3.1e-23 Score=203.68 Aligned_cols=287 Identities=17% Similarity=0.164 Sum_probs=210.9
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLR 214 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~ 214 (479)
..+.++++.+. ++....++.-. +++|+.|.+.+|. +..+.+ +..+++|++|++++|.++.+| .+.++++|+
T Consensus 42 ~l~~L~~L~l~-~~~i~~~~~~~~~~~L~~L~l~~n~----i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVA-GEKVASIQGIEYLTNLEYLNLNGNQ----ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECC-SSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred hcccccEEEEe-CCccccchhhhhcCCccEEEccCCc----cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 46778888888 66666565533 8999999999887 344433 889999999999999988875 588999999
Q ss_pred eeecCCCCCccCChhHHhcCcCCcEEecCCC-cccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCC-
Q 037759 215 YLNLNIPSLKSLPSSLLNSLLNLYTLDMPFS-YIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALH- 291 (479)
Q Consensus 215 ~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~- 291 (479)
+|++++|.+..+|. + ..+++|++|++++| .+..++ .+..+++|++|+++ +|.... +.+..++.|+.+++.+
T Consensus 114 ~L~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~---~~~~~~~~~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT---ESKVKDVTPIANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECC---SSCCCCCGGGGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEec---CCCcCCchhhccCCCCCEEEccCC
Confidence 99999999998877 5 89999999999999 555554 48899999999999 876655 3566777888888776
Q ss_pred CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC--CCccEEEeecccccCcceEEEEeccc
Q 037759 292 PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI--PRRSNIILAKYQFPPSLTHLSFLNIE 369 (479)
Q Consensus 292 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l--p~L~~L~l~~~~lp~~L~~L~l~~~~ 369 (479)
.-..... +..+++|+.|+++++. .....+ +..+++|++|++++..+- +. +..+ ++|+.|++++|.
T Consensus 188 ~l~~~~~-~~~l~~L~~L~l~~n~--l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-------~~~l-~~L~~L~l~~n~ 254 (347)
T 4fmz_A 188 QIEDISP-LASLTSLHYFTAYVNQ--ITDITP--VANMTRLNSLKIGNNKITDLSP-------LANL-SQLTWLEIGTNQ 254 (347)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSSC--CCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GTTC-TTCCEEECCSSC
T ss_pred ccccccc-ccCCCccceeecccCC--CCCCch--hhcCCcCCEEEccCCccCCCcc-------hhcC-CCCCEEECCCCc
Confidence 2233445 6778889998888765 332222 778888999988873221 11 2344 788888888887
Q ss_pred CCCCCccccccCccCceEEeccCC---------CCCcceEeeccCCCCCee-EEcCCCCCCccEeEEecCCCCCCCcccc
Q 037759 370 LMDDPMPALEKLAVLRKLACSSDG---------FPKLKVLHLKSMLWLQEW-TMGIRAMPKLECSILNPCAHLKMIPEQL 439 (479)
Q Consensus 370 l~~~~~~~l~~l~~L~~l~~~~~~---------~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l 439 (479)
+.. ++.+..+++|+.++++.+. +++|+.|++.++. +... +...+.+++|+.|++++|+ ++.++. +
T Consensus 255 l~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~ 329 (347)
T 4fmz_A 255 ISD--INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-L 329 (347)
T ss_dssp CCC--CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-G
T ss_pred cCC--ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC-h
Confidence 654 3567777888877776543 5677788887764 3322 2223568899999999974 777765 7
Q ss_pred cCCCCCCEEEeeCCc
Q 037759 440 WCLKSLNKLELWWPE 454 (479)
Q Consensus 440 ~~l~~L~~L~l~~c~ 454 (479)
..+++|+.|++++|+
T Consensus 330 ~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEESSSCC-
T ss_pred hhhhccceeehhhhc
Confidence 889999999999987
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=4.4e-23 Score=217.91 Aligned_cols=193 Identities=15% Similarity=0.086 Sum_probs=151.9
Q ss_pred CCCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccc
Q 037759 136 LWENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVF 211 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~ 211 (479)
.++.++++.+. ++....++. .+ +++|+.|.+.+|. +..+.+..|.++++|++|++++|.++.+ |..|++++
T Consensus 30 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCE----IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCc----ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 34789999999 666665655 55 9999999999997 6667778899999999999999999977 78899999
Q ss_pred cCCeeecCCCCCccCChhHHhcCcCCcEEecCCCccc--ccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccC-
Q 037759 212 LLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYID--HTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLD- 285 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~- 285 (479)
+|++|++++|.+..+|+..|+++++|++|++++|.+. .+|..++++++|++|+++ +|.... | .++.++.|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS---YNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC---SSCCCEECTTTTHHHHHCTT
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc---CCcceecChhhhhhhhcccc
Confidence 9999999999999888433499999999999999877 478999999999999999 887777 4 666555544
Q ss_pred ---eeecCCCC--CChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEee
Q 037759 286 ---FISALHPC--CCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLA 338 (479)
Q Consensus 286 ---~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 338 (479)
.+++.+.. ..... .....+|+.|+++++.. .....+..+..+++|+.+.+.
T Consensus 182 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQ-AFQGIKLHELTLRGNFN-SSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp CCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCS-CHHHHHHHHHTTTTCEEEEEE
T ss_pred ccceeeccCCCcceeCcc-cccCceeeeeeccCCcc-chhHHHHHhcccccccccccc
Confidence 56666521 12223 33344899999997752 346677778888888777663
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.4e-23 Score=222.74 Aligned_cols=302 Identities=15% Similarity=0.153 Sum_probs=185.0
Q ss_pred CCCCeEEEEEEcCCCCcc------------------ccccc----CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEE
Q 037759 136 LWENVKRFTVHGNLNDFE------------------FLDHF----DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVL 193 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~------------------~~~~~----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 193 (479)
..+.++.+.+. ++.... +|+.+ +++|+.|.+.+|. .....+..|.++++|++|
T Consensus 204 ~l~~L~~L~Ls-~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 204 RLTKLRQFYMG-NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP----NLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT----TCSSCCTTTTTCSSCCEE
T ss_pred cccCCCEEECc-CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc----CCccChHHHhcCCCCCEE
Confidence 45566677776 444444 55553 4667777776665 223344566666666666
Q ss_pred EecCCc-Cc--cCchhhccc------ccCCeeecCCCCCccCCh--hHHhcCcCCcEEecCCCccc-ccchhhhcCccCc
Q 037759 194 DLGSLV-LI--RYPSEIEYV------FLLRYLNLNIPSLKSLPS--SLLNSLLNLYTLDMPFSYID-HTADEFWKMSKLR 261 (479)
Q Consensus 194 ~L~~~~-l~--~lp~~l~~L------~~L~~L~L~~~~l~~lp~--~i~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~ 261 (479)
++++|. ++ .+|..++++ ++|++|++++|.++.+|. .+ +++++|++|++++|.+. .+| .++.+++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 666666 55 366666655 666666666666666666 55 66666666666666665 666 566666666
Q ss_pred EEEeccCCCCCCCC-C-CCCCCcc-cCeeecCCC--CCChhhhcCCC--CCCCeEEEEeCCccchHHHHHHhc-------
Q 037759 262 YLNFGSITLSAHPG-K-YCGSLEN-LDFISALHP--CCCPEDILGRL--PNLQNIQIWGDLIYYQSLLSKILY------- 327 (479)
Q Consensus 262 ~L~l~~~~~~~~~~-p-~i~~L~~-L~~l~~~~~--~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~l~------- 327 (479)
+|+++ +|.... | .++.+.. |+.+++.+. ...+.. ++.+ ++|+.|+++++. .....+..+.
T Consensus 357 ~L~L~---~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 357 SLNLA---YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYNE--IGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEECC---SSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSSC--TTTTTTCSSCTTCSSCC
T ss_pred EEECC---CCccccccHhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCCc--CCCcchhhhcccccccc
Confidence 66666 655545 5 5555555 666665541 112222 3332 256666666554 4443344444
Q ss_pred cCCCccEEEeecCCC----------CCCccEEEe---eccccc--------------CcceEEEEecccCCCCCccccc-
Q 037759 328 RLSCLESLKLAKESK----------IPRRSNIIL---AKYQFP--------------PSLTHLSFLNIELMDDPMPALE- 379 (479)
Q Consensus 328 ~l~~L~~L~l~~~~~----------lp~L~~L~l---~~~~lp--------------~~L~~L~l~~~~l~~~~~~~l~- 379 (479)
.+++|++|+++++.+ +++|+.|++ .+..+| ++|+.|++++|.++..+ ..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-hhhhh
Confidence 445566666655111 134555555 111111 28999999999987433 3444
Q ss_pred -cCccCceEEeccCC----------CCCcceEeeccC------CCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCC
Q 037759 380 -KLAVLRKLACSSDG----------FPKLKVLHLKSM------LWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCL 442 (479)
Q Consensus 380 -~l~~L~~l~~~~~~----------~~~L~~L~l~~~------~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l 442 (479)
.+++|+.|+++.+. +++|+.|+++++ .-...+|...+.+++|+.|++++| .++.+|..+.
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~-- 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT-- 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--
Confidence 88999988887654 467888888542 223445555567899999999986 5688887655
Q ss_pred CCCCEEEeeCCc
Q 037759 443 KSLNKLELWWPE 454 (479)
Q Consensus 443 ~~L~~L~l~~c~ 454 (479)
++|+.|++++|+
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 799999999987
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.3e-23 Score=225.68 Aligned_cols=303 Identities=14% Similarity=0.112 Sum_probs=194.7
Q ss_pred cCCCCeEEEEEEcCCCCcc------------------ccccc----CCCccEEEEecCCCCCCCcchhHHHhCcCCceeE
Q 037759 135 KLWENVKRFTVHGNLNDFE------------------FLDHF----DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRV 192 (479)
Q Consensus 135 ~~~~~~~~l~l~~~~~~~~------------------~~~~~----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 192 (479)
...+.++.|.+. ++.... +|+.+ +++|+.|.+.+|. .....+..|.++++|++
T Consensus 445 ~~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~----l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 445 QRLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP----NMTQLPDFLYDLPELQS 519 (876)
T ss_dssp GGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT----TCCSCCGGGGGCSSCCE
T ss_pred hcCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC----CCccChHHHhCCCCCCE
Confidence 345677788887 544444 66653 6778888887776 33344567778888888
Q ss_pred EEecCCc-Cc--cCchhhcccc-------cCCeeecCCCCCccCCh--hHHhcCcCCcEEecCCCcccccchhhhcCccC
Q 037759 193 LDLGSLV-LI--RYPSEIEYVF-------LLRYLNLNIPSLKSLPS--SLLNSLLNLYTLDMPFSYIDHTADEFWKMSKL 260 (479)
Q Consensus 193 L~L~~~~-l~--~lp~~l~~L~-------~L~~L~L~~~~l~~lp~--~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L 260 (479)
|++++|. ++ .+|..++++. +|++|++++|.+..+|. .+ +++++|++|++++|.+..+| .++++++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 8888887 66 3777777666 78888888888778877 66 78888888888888777777 67788888
Q ss_pred cEEEeccCCCCCCCC-C-CCCCCcc-cCeeecCCCC--CChhhhcCCCC--CCCeEEEEeCCccchHHHH---HHhc--c
Q 037759 261 RYLNFGSITLSAHPG-K-YCGSLEN-LDFISALHPC--CCPEDILGRLP--NLQNIQIWGDLIYYQSLLS---KILY--R 328 (479)
Q Consensus 261 ~~L~l~~~~~~~~~~-p-~i~~L~~-L~~l~~~~~~--~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~---~~l~--~ 328 (479)
++|+++ +|.... | .+..+.. |+.+++.++. ..+.. +..++ +|+.|++++|. .....+ ..+. .
T Consensus 598 ~~L~Ls---~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 598 TDLKLD---YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEEECC---SSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEECCSSC--TTTTSSSCSSCTTTCC
T ss_pred eEEECc---CCccccchHHHhhccccCCEEECcCCCCCcCchh-hhccccCCCCEEECcCCc--CCCccccchhhhcccc
Confidence 888888 777666 7 7777776 7777776521 22222 44443 37777777665 322211 1111 2
Q ss_pred CCCccEEEeecCCC----------CCCccEEEe---eccccc--------------CcceEEEEecccCCCCCccccc--
Q 037759 329 LSCLESLKLAKESK----------IPRRSNIIL---AKYQFP--------------PSLTHLSFLNIELMDDPMPALE-- 379 (479)
Q Consensus 329 l~~L~~L~l~~~~~----------lp~L~~L~l---~~~~lp--------------~~L~~L~l~~~~l~~~~~~~l~-- 379 (479)
+++|+.|+++++.+ +++|+.|++ .+..+| ++|+.|++++|.++..+ ..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~ 750 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRAT 750 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-HHhhhc
Confidence 23677777776211 246677766 111111 27788888888776332 3343
Q ss_pred cCccCceEEeccCC----------CCCcceEeeccCC------CCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCC
Q 037759 380 KLAVLRKLACSSDG----------FPKLKVLHLKSML------WLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLK 443 (479)
Q Consensus 380 ~l~~L~~l~~~~~~----------~~~L~~L~l~~~~------~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~ 443 (479)
.+++|+.|+++.+. +++|+.|.++++. -...+|...+.+++|+.|++++| .++.+|..+. +
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~ 827 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--P 827 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--S
T ss_pred cCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc--C
Confidence 67777777776543 3566777775422 12334444456778888888875 4577776654 5
Q ss_pred CCCEEEeeCCc
Q 037759 444 SLNKLELWWPE 454 (479)
Q Consensus 444 ~L~~L~l~~c~ 454 (479)
+|+.|++++|+
T Consensus 828 ~L~~LdLs~N~ 838 (876)
T 4ecn_A 828 QLYILDIADNP 838 (876)
T ss_dssp SSCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 78888888876
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=6.7e-23 Score=216.53 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=35.5
Q ss_pred CCCCeEEEEEEcCCCCccc--cccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCcee--EEEecCCcCc
Q 037759 136 LWENVKRFTVHGNLNDFEF--LDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLR--VLDLGSLVLI 201 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~--~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~--~L~L~~~~l~ 201 (479)
...+++.+.+. ++....+ +... +++|+.|.+.+|. +....+..|..+++|+ .|++++|.+.
T Consensus 127 ~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 127 NQKTLESLYLG-SNHISSIKLPKGFPTEKLKVLDFQNNA----IHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TCTTCCEEECC-SSCCCCCCCCTTCCCTTCCEEECCSSC----CCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cCCcccEEECC-CCcccccCcccccCCcccCEEEcccCc----ccccChhhhhhhcccceeEEecCCCccC
Confidence 44556666666 4444333 3333 6677777777665 4445556666666666 5666666554
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=5.8e-24 Score=230.58 Aligned_cols=310 Identities=19% Similarity=0.161 Sum_probs=164.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCc-CCceeEEEecCCcCc-cCchhhccccc
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKM-FKFLRVLDLGSLVLI-RYPSEIEYVFL 212 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~-~lp~~l~~L~~ 212 (479)
..++++.+.+. ++......... +++|+.|.+.+|. .....+..+.. +++|++|++++|.+. .+|..++++++
T Consensus 245 ~l~~L~~L~Ls-~n~l~~~~~~~~l~~L~~L~L~~n~----l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 245 TCTELKLLNIS-SNQFVGPIPPLPLKSLQYLSLAENK----FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp TCSSCCEEECC-SSCCEESCCCCCCTTCCEEECCSSE----EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cCCCCCEEECC-CCcccCccCccccCCCCEEECcCCc----cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 34556666666 33333222222 5566666666554 22122222222 355666666666555 44555566666
Q ss_pred CCeeecCCCCCc-cCChhHHhcCcCCcEEecCCCccc-ccchhhhcCc-cCcEEEeccCC--------------------
Q 037759 213 LRYLNLNIPSLK-SLPSSLLNSLLNLYTLDMPFSYID-HTADEFWKMS-KLRYLNFGSIT-------------------- 269 (479)
Q Consensus 213 L~~L~L~~~~l~-~lp~~i~~~l~~L~~L~l~~~~l~-~lp~~~~~L~-~L~~L~l~~~~-------------------- 269 (479)
|++|++++|.+. .+|...|+++++|++|++++|.+. .+|..+..++ +|++|+++...
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 666666666554 555552255666666666665443 4555555554 55555555000
Q ss_pred ---CCCCCC--C-CCCCCcccCeeecCC---CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecC
Q 037759 270 ---LSAHPG--K-YCGSLENLDFISALH---PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKE 340 (479)
Q Consensus 270 ---~~~~~~--p-~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 340 (479)
+|.... | .+++++.|+.+++.+ ....+.. ++.+++|+.|++++|. .....+..+..+++|++|+++++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNM--LEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSS
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCc--ccCcCCHHHcCCCCceEEEecCC
Confidence 443332 3 444455555555543 1123333 5555566666665554 44444455555666666666551
Q ss_pred C---CC-------CCccEEEe-----------ecccccCcceEEEEecccCCCCCccccccCccCceEEeccCC------
Q 037759 341 S---KI-------PRRSNIIL-----------AKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDG------ 393 (479)
Q Consensus 341 ~---~l-------p~L~~L~l-----------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~------ 393 (479)
. .+ ++|+.|++ ++..+ ++|++|++++|.+.......++.+++|+.++++.+.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 1 11 35555555 34455 566666666666554444555666666655544321
Q ss_pred ---------------------------------------------------------------------------CCCcc
Q 037759 394 ---------------------------------------------------------------------------FPKLK 398 (479)
Q Consensus 394 ---------------------------------------------------------------------------~~~L~ 398 (479)
+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 13344
Q ss_pred eEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 399 VLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 399 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
.|+++++.--..+|...+.+++|+.|++++|.--..+|..+..+++|+.|++++|.
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 55555543222444445667778888888754444677778888888888888775
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=3.4e-23 Score=219.70 Aligned_cols=302 Identities=13% Similarity=0.107 Sum_probs=236.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcc-hhHHHhCcC------CceeEEEecCCcCccCch-
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSN-YCEKIYKMF------KFLRVLDLGSLVLIRYPS- 205 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~-~~~~~~~~l------~~L~~L~L~~~~l~~lp~- 205 (479)
....++.+.+..+.....+|+.+ +++|+.|.+.+|.. +.. ..+..+..+ ++|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG---ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT---SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC---CccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 56789999999555566788888 99999999999973 333 456666665 999999999999999998
Q ss_pred -hhcccccCCeeecCCCCCc-cCChhHHhcCcCCcEEecCCCcccccchhhhcCcc-CcEEEeccCCCCCCCC-C-CCC-
Q 037759 206 -EIEYVFLLRYLNLNIPSLK-SLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSK-LRYLNFGSITLSAHPG-K-YCG- 279 (479)
Q Consensus 206 -~l~~L~~L~~L~L~~~~l~-~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~-L~~L~l~~~~~~~~~~-p-~i~- 279 (479)
.++++++|++|++++|.+. .+| .+ +++++|++|++++|.+..+|..+..+++ |++|+++ +|.... | .++
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls---~N~l~~lp~~~~~ 398 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA---HNKLKYIPNIFDA 398 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC---SSCCSSCCSCCCT
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc---CCcCcccchhhhh
Confidence 9999999999999999999 999 77 9999999999999999999999999999 9999999 998778 8 776
Q ss_pred -CCcccCeeecCCC---CCChhhhcC-------CCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCC-------
Q 037759 280 -SLENLDFISALHP---CCCPEDILG-------RLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKES------- 341 (479)
Q Consensus 280 -~L~~L~~l~~~~~---~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------- 341 (479)
.+..|+.+++.+. ...+.. +. .+++|+.|+++++. ........+..+++|++|+++++.
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~--l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQ--ISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSC--CCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred cccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCc--cCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 4558999988862 223344 55 77899999999876 553333445678999999998822
Q ss_pred CCC----------CccEEEe----------ecc--cccCcceEEEEecccCCCCCccccccCccCceEEecc--------
Q 037759 342 KIP----------RRSNIIL----------AKY--QFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS-------- 391 (479)
Q Consensus 342 ~lp----------~L~~L~l----------~~~--~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~-------- 391 (479)
.++ +|+.|++ .+. .+ ++|+.|++++|.++. ....++.+++|+.|+++.
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l-~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC-TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCCccChhhhhccC-CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 221 7888888 233 67 899999999999876 445678899999999842
Q ss_pred ---------CCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCc------cc---ccCCCCCCEEEeeCC
Q 037759 392 ---------DGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIP------EQ---LWCLKSLNKLELWWP 453 (479)
Q Consensus 392 ---------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp------~~---l~~l~~L~~L~l~~c 453 (479)
..+++|+.|+++++. +..+|.. .+++|+.|++++|+ +..++ .. ...+...+..++.+|
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~--~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C 629 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSND-IRKVNEK--ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESC
T ss_pred ccccChHHHhcCCCCCEEECCCCc-CCccCHh--HhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCC
Confidence 126789999999864 5777644 34899999999975 43332 11 112333455688899
Q ss_pred c
Q 037759 454 E 454 (479)
Q Consensus 454 ~ 454 (479)
+
T Consensus 630 ~ 630 (636)
T 4eco_A 630 D 630 (636)
T ss_dssp G
T ss_pred c
Confidence 8
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=8.5e-23 Score=215.69 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=78.9
Q ss_pred cccCCCCeEEEEEEcCCCCccc-cccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhc
Q 037759 133 EVKLWENVKRFTVHGNLNDFEF-LDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIE 208 (479)
Q Consensus 133 ~~~~~~~~~~l~l~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~ 208 (479)
.+...+.++++.+. ++....+ +..+ +++|+.|.+.+|. +....+..|.++++|++|++++|.+..+| ..++
T Consensus 51 ~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n~----l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 51 SFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGNP----IQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp TTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCC----CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred hccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCCc----ccccChhhcCCcccCCEEEccCCccccccccccC
Confidence 34456677888877 5554444 4444 7788888887776 44555667777888888888888777665 5677
Q ss_pred ccccCCeeecCCCCCc--cCChhHHhcCcCCcEEecCCCcccccc
Q 037759 209 YVFLLRYLNLNIPSLK--SLPSSLLNSLLNLYTLDMPFSYIDHTA 251 (479)
Q Consensus 209 ~L~~L~~L~L~~~~l~--~lp~~i~~~l~~L~~L~l~~~~l~~lp 251 (479)
++++|++|++++|.+. .+|..+ +++++|++|++++|.+..++
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecC
Confidence 7777888888777776 366666 77777777777777665553
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.6e-22 Score=211.01 Aligned_cols=304 Identities=15% Similarity=0.127 Sum_probs=171.8
Q ss_pred CCeEEEEEEcCCCCccc-cccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hcccccC
Q 037759 138 ENVKRFTVHGNLNDFEF-LDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFLL 213 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~L 213 (479)
+.++++.+. ++....+ +..+ +++|++|.+.+|. +....+..|..+++|++|++++|.+..+|.. ++++++|
T Consensus 26 ~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECc-CCccCccChhhhhcCCcccEEECCCCC----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 456666666 4444333 3344 6667777776665 4445555666667777777777766655443 6666777
Q ss_pred CeeecCCCCCccC--ChhHHhcCcCCcEEecCCCc-ccccc-hhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCe
Q 037759 214 RYLNLNIPSLKSL--PSSLLNSLLNLYTLDMPFSY-IDHTA-DEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDF 286 (479)
Q Consensus 214 ~~L~L~~~~l~~l--p~~i~~~l~~L~~L~l~~~~-l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~ 286 (479)
++|++++|.++.+ |..+ +++++|++|++++|. +..+| ..+.++++|++|+++ +|.... | .++.++.|+.
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK---ALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE---ETTCCEECTTTTTTCSEEEE
T ss_pred cEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeecc---CCcccccChhhhhccccCce
Confidence 7777777666633 4444 666777777776664 55665 346666777777776 665554 4 5666666666
Q ss_pred eecCCCC--CChhhhcCCCCCCCeEEEEeCCccchH-------------------------------HHHHHhccCCCcc
Q 037759 287 ISALHPC--CCPEDILGRLPNLQNIQIWGDLIYYQS-------------------------------LLSKILYRLSCLE 333 (479)
Q Consensus 287 l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------------------~~~~~l~~l~~L~ 333 (479)
+++.... ......++.+++|+.|+++++. ... .+...+..+++|+
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTN--LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCB--CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred EecccCcccccchhhHhhcccccEEEccCCc--cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 6655411 1111102345556666655433 111 1112223344555
Q ss_pred EEEeecC----------------CCCCCccEEEe---ecc------------cccCcceEEEEecccCCCCCccccccCc
Q 037759 334 SLKLAKE----------------SKIPRRSNIIL---AKY------------QFPPSLTHLSFLNIELMDDPMPALEKLA 382 (479)
Q Consensus 334 ~L~l~~~----------------~~lp~L~~L~l---~~~------------~lp~~L~~L~l~~~~l~~~~~~~l~~l~ 382 (479)
.+.+.+. ..+++++.|.+ .+. ...++|+.|++++|.+...+...++.++
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~ 334 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence 5555430 01134444443 000 0114567777777766543333335677
Q ss_pred cCceEEeccC--------------CCCCcceEeeccCCCCCeeEE---cCCCCCCccEeEEecCCCCCCCcccccCCCCC
Q 037759 383 VLRKLACSSD--------------GFPKLKVLHLKSMLWLQEWTM---GIRAMPKLECSILNPCAHLKMIPEQLWCLKSL 445 (479)
Q Consensus 383 ~L~~l~~~~~--------------~~~~L~~L~l~~~~~l~~~~~---~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L 445 (479)
+|+.++++.+ .+++|+.|+++++ .++.++. ..+.+++|+.|++++| +++.+|..+..+++|
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L 412 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKM 412 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccc
Confidence 7777776543 3467777777765 3444431 2455777888888775 677777777777777
Q ss_pred CEEEeeCCc
Q 037759 446 NKLELWWPE 454 (479)
Q Consensus 446 ~~L~l~~c~ 454 (479)
+.|++++|.
T Consensus 413 ~~L~Ls~N~ 421 (549)
T 2z81_A 413 RFLNLSSTG 421 (549)
T ss_dssp CEEECTTSC
T ss_pred cEEECCCCC
Confidence 777777765
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.8e-22 Score=206.30 Aligned_cols=294 Identities=16% Similarity=0.151 Sum_probs=172.4
Q ss_pred CCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCe
Q 037759 137 WENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRY 215 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 215 (479)
...++.+.+. ++....++.-. +++|+.|.+.+|. +....+ +..+++|++|++++|.+..++. ++++++|++
T Consensus 45 l~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQ----LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hccccEEecC-CCCCccCcchhhhcCCCEEECCCCc----cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 4567888887 66666566533 8888999888887 334433 8888889999998888887766 888888899
Q ss_pred eecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCC-CC
Q 037759 216 LNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHP-CC 294 (479)
Q Consensus 216 L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~-~~ 294 (479)
|++++|.++.+|+ + +++++|++|++++|.+..+|. ++.+++|++|+++ ++....+.+.+++.|+.+++.+. ..
T Consensus 117 L~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~---~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 117 LTLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG---NQVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp EECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE---ESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcccEeecC---CcccCchhhccCCCCCEEECcCCcCC
Confidence 9998888888876 5 888888888888887777764 6666666666665 32111013334445555544431 11
Q ss_pred ChhhhcCCCCCCCeEEEEeCCccchHHHH--------------------HHhccCCCccEEEeecCCC--------CCCc
Q 037759 295 CPEDILGRLPNLQNIQIWGDLIYYQSLLS--------------------KILYRLSCLESLKLAKESK--------IPRR 346 (479)
Q Consensus 295 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~~~--------lp~L 346 (479)
.+.. +..+++|+.|+++++. .....+ ..+..+++|+.|++++..+ +++|
T Consensus 191 ~~~~-l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 267 (466)
T 1o6v_A 191 DISV-LAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 267 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred CChh-hccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence 2223 4444445555544333 111111 1234444444444444110 1344
Q ss_pred cEEEe---------ecccccCcceEEEEecccCCCCCccccccCccCceEEeccCC---------CCCcceEeeccCCCC
Q 037759 347 SNIIL---------AKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDG---------FPKLKVLHLKSMLWL 408 (479)
Q Consensus 347 ~~L~l---------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~---------~~~L~~L~l~~~~~l 408 (479)
+.|++ .+..+ ++|+.|++++|.+.. ++.++.+++|+.++++.+. +++|+.|++.++ .+
T Consensus 268 ~~L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l 343 (466)
T 1o6v_A 268 TELKLGANQISNISPLAGL-TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KV 343 (466)
T ss_dssp SEEECCSSCCCCCGGGTTC-TTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CC
T ss_pred CEEECCCCccCccccccCC-CccCeEEcCCCcccC--chhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-cc
Confidence 44444 12233 555555555555432 2235556666666554432 345566666554 23
Q ss_pred CeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 409 QEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
..++ ....+++|+.|++.+| .++.++. +..+++|+.|++++|+
T Consensus 344 ~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 344 SDVS-SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCG-GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE
T ss_pred CCch-hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc
Confidence 3332 3345677777777765 3444443 6677777777777765
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.3e-22 Score=219.78 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=221.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcc-hhHHHhCcC-------CceeEEEecCCcCccCch
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSN-YCEKIYKMF-------KFLRVLDLGSLVLIRYPS 205 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~-~~~~~~~~l-------~~L~~L~L~~~~l~~lp~ 205 (479)
....++.|.+..+.....+|..+ +++|+.|.+.+|.. +.. ..|..+..+ ++|++|++++|.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~---lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG---ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT---SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC---cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 56789999999555567788887 99999999999973 233 345555555 499999999999999998
Q ss_pred --hhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCcc-CcEEEeccCCCCCCCC-C-CCCC
Q 037759 206 --EIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSK-LRYLNFGSITLSAHPG-K-YCGS 280 (479)
Q Consensus 206 --~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~-L~~L~l~~~~~~~~~~-p-~i~~ 280 (479)
.++++++|++|++++|.+..+| .+ +++++|+.|++++|.+..+|..+.++++ |++|+++ +|.... | .+..
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls---~N~L~~lp~~~~~ 640 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS---HNKLKYIPNIFNA 640 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC---SSCCCSCCSCCCT
T ss_pred hhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECc---CCCCCcCchhhhc
Confidence 9999999999999999999999 67 9999999999999999999999999999 9999999 998777 8 7664
Q ss_pred C--cccCeeecCCCCC--Chhh---hcC--CCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCC-------CCC
Q 037759 281 L--ENLDFISALHPCC--CPED---ILG--RLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKES-------KIP 344 (479)
Q Consensus 281 L--~~L~~l~~~~~~~--~~~~---~l~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~lp 344 (479)
+ +.|+.+++.++.. .++. .++ .+++|+.|++++|. ........+..+++|+.|+++++. .+.
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~--L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~ 718 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE--IQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC--CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc--CCccCHHHHccCCCCCEEECCCCcCCccChHHhc
Confidence 4 4588888876211 1111 022 34589999999876 553333344588999999998721 111
Q ss_pred ----------CccEEEe----------ecc--cccCcceEEEEecccCCCCCccccccCccCceEEecc-----------
Q 037759 345 ----------RRSNIIL----------AKY--QFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS----------- 391 (479)
Q Consensus 345 ----------~L~~L~l----------~~~--~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~----------- 391 (479)
+|+.|++ .+. .+ ++|+.|++++|.+.. ....++.+++|+.|+++.
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l-~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL-PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC-TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred cccccccccCCccEEECCCCCCccchHHhhhccC-CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 7888888 333 67 899999999999876 344678999999998854
Q ss_pred ------CCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCC
Q 037759 392 ------DGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKM 434 (479)
Q Consensus 392 ------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 434 (479)
..+++|+.|+++++. +..+|.. .+++|+.|++++|+ +..
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~--l~~~L~~LdLs~N~-l~~ 841 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSND-IRKVDEK--LTPQLYILDIADNP-NIS 841 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSC-CCBCCSC--CCSSSCEEECCSCT-TCE
T ss_pred cChHHHhcCCCCCEEECCCCC-CCccCHh--hcCCCCEEECCCCC-CCc
Confidence 126789999999874 5777654 34899999999976 443
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.9e-22 Score=210.46 Aligned_cols=306 Identities=17% Similarity=0.143 Sum_probs=207.9
Q ss_pred CcccCCCCeEEEEEEcCCCCcccc-ccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc--Cchh
Q 037759 132 QEVKLWENVKRFTVHGNLNDFEFL-DHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR--YPSE 206 (479)
Q Consensus 132 ~~~~~~~~~~~l~l~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~ 206 (479)
..+.....++++.+. ++....++ +.+ +++|+.|.+.+|. +....+..|.++++|++|++++|.++. .|..
T Consensus 44 ~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 118 (549)
T 2z81_A 44 GDLRACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDNH----LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118 (549)
T ss_dssp STTSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTSC----CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS
T ss_pred hhhhcCCcccEEECC-CCCcCccChhhccccccCCEEECCCCc----cCccCHHHhccCCCCcEEECCCCcccccchhhh
Confidence 344567889999999 66655555 455 8999999999998 666778889999999999999999984 4778
Q ss_pred hcccccCCeeecCCCC-CccCChhHHhcCcCCcEEecCCCcccc-cchhhhcCccCcEEEeccCCCCCCCC-C-CC-CCC
Q 037759 207 IEYVFLLRYLNLNIPS-LKSLPSSLLNSLLNLYTLDMPFSYIDH-TADEFWKMSKLRYLNFGSITLSAHPG-K-YC-GSL 281 (479)
Q Consensus 207 l~~L~~L~~L~L~~~~-l~~lp~~i~~~l~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i-~~L 281 (479)
++++++|++|++++|. +..+|...|+++++|++|++++|.+.. .|..++.+++|++|+++ .+.... | .+ ..+
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~---~n~~~~~~~~~~~~l 195 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH---LSESAFLLEIFADIL 195 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE---CSBSTTHHHHHHHST
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc---cCcccccchhhHhhc
Confidence 9999999999999998 778886444999999999999997776 57889999999999999 877655 5 32 255
Q ss_pred cccCeeecCCCCCCh----------------------------------------------------------------h
Q 037759 282 ENLDFISALHPCCCP----------------------------------------------------------------E 297 (479)
Q Consensus 282 ~~L~~l~~~~~~~~~----------------------------------------------------------------~ 297 (479)
+.|+.+++.+....- .
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 666666554310000 0
Q ss_pred hhcCCCC-----------------------------CCCeEEEEeCCccchHHHHHHh-ccCCCccEEEeecCC------
Q 037759 298 DILGRLP-----------------------------NLQNIQIWGDLIYYQSLLSKIL-YRLSCLESLKLAKES------ 341 (479)
Q Consensus 298 ~~l~~l~-----------------------------~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~------ 341 (479)
. +..++ +|+.|+++++. .. .++..+ ..+++|++|++++..
T Consensus 276 ~-~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~--l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 276 V-VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK--VF-LVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp C-CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC--CC-CCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred h-hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc--cc-cCCHHHHhcCccccEEEccCCccccccc
Confidence 0 01111 23333333322 11 122222 456777777776611
Q ss_pred -------CCCCccEEEe-------------ecccccCcceEEEEecccCCCCCccccccCccCceEEeccCC--------
Q 037759 342 -------KIPRRSNIIL-------------AKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDG-------- 393 (479)
Q Consensus 342 -------~lp~L~~L~l-------------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~-------- 393 (479)
.+|+|+.|++ .+..+ ++|++|++++|.++.. ...++.+++|+.++++.+.
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~ 429 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI 429 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTS
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccchh
Confidence 1256777766 13455 6777777777776532 2234455556655554432
Q ss_pred --------------------CCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCc-ccccCCCCCCEEEeeC
Q 037759 394 --------------------FPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIP-EQLWCLKSLNKLELWW 452 (479)
Q Consensus 394 --------------------~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 452 (479)
+++|+.|+++++ +++.++. ...+++|+.|++++| .++.+| ..+..+++|+.|++++
T Consensus 430 ~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCS
T ss_pred cCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecC
Confidence 445566666554 3444543 245788889999885 566665 4588899999999987
Q ss_pred Cc
Q 037759 453 PE 454 (479)
Q Consensus 453 c~ 454 (479)
|+
T Consensus 507 N~ 508 (549)
T 2z81_A 507 NP 508 (549)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.6e-22 Score=197.01 Aligned_cols=268 Identities=16% Similarity=0.164 Sum_probs=214.0
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++++.|.+.++.. ..+ ..+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+ +++++|+
T Consensus 43 l~~L~~L~l~~~~i----~~~--~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKV----ASI--QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL-QNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCC----CCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG-TTCTTCS
T ss_pred cccccEEEEeCCcc----ccc--hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH-cCCCcCC
Confidence 88999999999884 333 248889999999999999998877 999999999999999999986 46 9999999
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCC-CCCChhhhcCCCCCCCeEEEEeCC
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALH-PCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+|++++|.+..+|. +..+++|++|+++ +|.... + .+..++.|+.+++.+ ....... ++.+++|+.|+++++.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~---~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLG---ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECT---TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh-hccCCceeEEECC---CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc
Confidence 99999999999987 9999999999999 987666 5 777888899888876 2234445 7788999999999765
Q ss_pred ccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccC---
Q 037759 316 IYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSD--- 392 (479)
Q Consensus 316 ~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~--- 392 (479)
...... +..+++|+.|.+++..+- .+. .+..+ ++|++|++++|.++... .+..+++|+.++++.+
T Consensus 189 --l~~~~~--~~~l~~L~~L~l~~n~l~-~~~----~~~~~-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 189 --IEDISP--LASLTSLHYFTAYVNQIT-DIT----PVANM-TRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp --CCCCGG--GGGCTTCCEEECCSSCCC-CCG----GGGGC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred --cccccc--ccCCCccceeecccCCCC-CCc----hhhcC-CcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccC
Confidence 332221 778899999998873221 000 12344 89999999999976543 3889999999998764
Q ss_pred ------CCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 393 ------GFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 393 ------~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
.+++|+.|.++++ .+..++ ....+++|+.|++++|......|..+..+++|+.|++++|+
T Consensus 257 ~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 257 DINAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CChhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 3678889998886 455553 24578999999999985444456778899999999999997
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.7e-22 Score=205.10 Aligned_cols=272 Identities=17% Similarity=0.183 Sum_probs=194.4
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
++++++|.+.++.. ..+. .+..+++|++|++++|.++.+|. +.++++|++|++++|.+..+++ + +++++|+
T Consensus 45 l~~l~~L~l~~~~i----~~l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~ 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGI----KSID--GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT 115 (466)
T ss_dssp HHTCCEEECCSSCC----CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCC
T ss_pred hccccEEecCCCCC----ccCc--chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCC
Confidence 67899999998874 3332 37889999999999999998887 9999999999999999999987 6 9999999
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCcc
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIY 317 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 317 (479)
+|++++|.+..+|. +.++++|++|+++ +|.... +.++.+..|+.+.+.+....... ++.+++|+.|+++++.
T Consensus 116 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~---~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~-- 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP-LKNLTNLNRLELS---SNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-- 188 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEEEE---EEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC--
T ss_pred EEECCCCCCCCChH-HcCCCCCCEEECC---CCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc--
Confidence 99999999999987 9999999999999 887665 46667788888877654455566 8999999999999775
Q ss_pred chHHHHHHhccCCCccEEEeecCCC--------CCCccEEEe---------ecccccCcceEEEEecccCCCCCcccccc
Q 037759 318 YQSLLSKILYRLSCLESLKLAKESK--------IPRRSNIIL---------AKYQFPPSLTHLSFLNIELMDDPMPALEK 380 (479)
Q Consensus 318 ~~~~~~~~l~~l~~L~~L~l~~~~~--------lp~L~~L~l---------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 380 (479)
.... ..+..+++|++|++++..+ +++|+.|++ .+..+ ++|+.|++++|.+.... .+..
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~--~~~~ 263 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLA--PLSG 263 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCG--GGTT
T ss_pred CCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccch--hhhc
Confidence 3322 3478889999999987221 257777777 23345 66777777777654322 2555
Q ss_pred CccCceEEeccCC---------CCCcceEeeccCC---------------------CCCeeEEcCCCCCCccEeEEecCC
Q 037759 381 LAVLRKLACSSDG---------FPKLKVLHLKSML---------------------WLQEWTMGIRAMPKLECSILNPCA 430 (479)
Q Consensus 381 l~~L~~l~~~~~~---------~~~L~~L~l~~~~---------------------~l~~~~~~~~~~~~L~~L~l~~c~ 430 (479)
+++|+.++++.+. +++|+.|++.++. .+..++. .+.+++|+.|++.+|
T Consensus 264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n- 341 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN- 341 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-
T ss_pred CCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-
Confidence 6666655554432 3444455444431 1222111 234556666666654
Q ss_pred CCCCCcccccCCCCCCEEEeeCCc
Q 037759 431 HLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 431 ~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
.++.++ .+..+++|+.|++++|+
T Consensus 342 ~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 342 KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred ccCCch-hhccCCCCCEEeCCCCc
Confidence 455443 45666667777766665
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.8e-22 Score=209.03 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=86.4
Q ss_pred HHhccCCCccEEEeecCC---------CCCCccEEEe------------ecccccCcceEEEEecccCCCCCccccccCc
Q 037759 324 KILYRLSCLESLKLAKES---------KIPRRSNIIL------------AKYQFPPSLTHLSFLNIELMDDPMPALEKLA 382 (479)
Q Consensus 324 ~~l~~l~~L~~L~l~~~~---------~lp~L~~L~l------------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~ 382 (479)
..+..+++|++|++++.. .+++|+.|++ .+..+ ++|++|++++|.+.......++.++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcCC
Confidence 345556666666665521 1246666666 12345 6777788877776665555677788
Q ss_pred cCceEEeccC------------CCCCcceEeeccCCCCCee-EEcCCCCCCccEeEEecCCCCCCCc-ccccCCCCCCEE
Q 037759 383 VLRKLACSSD------------GFPKLKVLHLKSMLWLQEW-TMGIRAMPKLECSILNPCAHLKMIP-EQLWCLKSLNKL 448 (479)
Q Consensus 383 ~L~~l~~~~~------------~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L 448 (479)
+|+.++++.+ .+++|+.|+++++. +..+ +...+.+++|+.|++++| .++.+| ..+..+++|+.|
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence 8887776543 25678888888763 4554 334567899999999986 577665 467889999999
Q ss_pred EeeCCc
Q 037759 449 ELWWPE 454 (479)
Q Consensus 449 ~l~~c~ 454 (479)
++++|+
T Consensus 524 ~l~~N~ 529 (570)
T 2z63_A 524 WLHTNP 529 (570)
T ss_dssp ECCSSC
T ss_pred EecCCc
Confidence 999854
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=8.8e-23 Score=213.88 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=90.7
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhccccc
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~ 212 (479)
+..++++.+. ++....++. .+ +++|++|++.+|. +..+.+..|.++++|++|++++|.++.+| ..|+++++
T Consensus 27 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEcc-CCccCccChhHhhCCCCceEEECCCCc----CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 3457777777 555444433 34 7778888877776 45555667777777888888777777554 56777777
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccc--cchhhhcCccCcEEEeccCCCCCCCC
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDH--TADEFWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
|++|++++|.++.+|...|+++++|++|++++|.+.. +|..++++++|++|+++ +|....
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~---~n~l~~ 163 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS---SNKIQS 163 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT---TSCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc---CCccce
Confidence 7777777777777765323777777777777776654 56777777777777777 665544
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=5.6e-22 Score=209.42 Aligned_cols=95 Identities=24% Similarity=0.385 Sum_probs=51.5
Q ss_pred CcceEEEEecccCCCCCcc-ccccCccCceEEeccC-----------CCCCcceEeeccCCCCCeeEE----cCCCCCCc
Q 037759 358 PSLTHLSFLNIELMDDPMP-ALEKLAVLRKLACSSD-----------GFPKLKVLHLKSMLWLQEWTM----GIRAMPKL 421 (479)
Q Consensus 358 ~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~l~~~~~-----------~~~~L~~L~l~~~~~l~~~~~----~~~~~~~L 421 (479)
++|++|++++|.+.....+ .++.+++|+.++++.+ .+++|+.|+++++. +..... ....+++|
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCc
Confidence 4455555555544333222 2445555555555432 13556666665542 222111 13346777
Q ss_pred cEeEEecCCCCCCC-cccccCCCCCCEEEeeCCc
Q 037759 422 ECSILNPCAHLKMI-PEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 422 ~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 454 (479)
+.|++++|. ++.+ |..+..+++|+.|++++|.
T Consensus 479 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 479 EILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCc-cCccChhhhccccCCCEEECCCCc
Confidence 777777763 4443 5667778888888888775
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2.3e-22 Score=215.38 Aligned_cols=305 Identities=16% Similarity=0.107 Sum_probs=188.4
Q ss_pred CCCeEEEEEEcCCCCcccccc-c--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhccccc
Q 037759 137 WENVKRFTVHGNLNDFEFLDH-F--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~~ 212 (479)
+..++++.+. ++....++.. + +++|++|.+.++. +....+..|.++++|++|++++|.++.+|. .|+++++
T Consensus 24 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSSC----CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCCc----cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 3678888888 5555555543 4 7888888888876 455666778888888888888888887775 5888888
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC-C--CCC--CCcccCe
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG-K--YCG--SLENLDF 286 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~--~L~~L~~ 286 (479)
|++|++++|.+..+|+..|+++++|++|++++|.+..++ ..++++++|++|+++ +|.... + .+. .++.|+.
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS---NNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC---SSCCCCBCHHHHGGGTTCEESE
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc---CCcccccCHHHhhccccccccE
Confidence 888888888888777544488888888888888666654 447778888888888 766554 3 222 4455666
Q ss_pred eecCCC---CCChhhhcCCCC-----------------------------------------------------CCCeEE
Q 037759 287 ISALHP---CCCPEDILGRLP-----------------------------------------------------NLQNIQ 310 (479)
Q Consensus 287 l~~~~~---~~~~~~~l~~l~-----------------------------------------------------~L~~L~ 310 (479)
+++.+. ...... ++.++ +|+.|+
T Consensus 176 L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 176 LELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 655431 111111 22222 255555
Q ss_pred EEeCCccchHHHHHHhccCCCccEEEeecCC-------CC---CCccEEEe--------------------ecccccCcc
Q 037759 311 IWGDLIYYQSLLSKILYRLSCLESLKLAKES-------KI---PRRSNIIL--------------------AKYQFPPSL 360 (479)
Q Consensus 311 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~l---p~L~~L~l--------------------~~~~lp~~L 360 (479)
++++. .....+..+..+++|++|++++.. .+ ++|+.|++ .+..+ ++|
T Consensus 255 Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L 331 (680)
T 1ziw_A 255 LSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCL 331 (680)
T ss_dssp CTTSC--CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTC
T ss_pred CCCCC--cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCC
Confidence 55443 332233345555566666655411 11 35555544 12234 677
Q ss_pred eEEEEecccCCCCCccccccCccCceEEeccCC----------C-----CCcceEeeccCCCCCeeE-EcCCCCCCccEe
Q 037759 361 THLSFLNIELMDDPMPALEKLAVLRKLACSSDG----------F-----PKLKVLHLKSMLWLQEWT-MGIRAMPKLECS 424 (479)
Q Consensus 361 ~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~----------~-----~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L 424 (479)
++|++++|.+.......++.+++|+.++++.+. | ++|+.|++.++. +..+. .....+++|+.|
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhhCCCCCCEE
Confidence 777777777766655567777777777765432 1 367777776643 33332 233456777777
Q ss_pred EEecCCCCCCCc-ccccCCCCCCEEEeeCCc
Q 037759 425 ILNPCAHLKMIP-EQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 425 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 454 (479)
++.+|.....+| ..+..+++|+.|++++|.
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCC
Confidence 777754323344 456666777777776664
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=3e-22 Score=214.39 Aligned_cols=301 Identities=17% Similarity=0.109 Sum_probs=210.9
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeecCC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNI 220 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~ 220 (479)
.+... +.....+|..+.++++.|.+.++. +..+.+..|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 8 ~~~cs-~~~L~~ip~~~~~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 8 VADCS-HLKLTQVPDDLPTNITVLNLTHNQ----LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EEECC-SSCCSSCCSCSCTTCSEEECCSSC----CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eeECC-CCCccccccccCCCCcEEECCCCC----CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 34444 555666787778899999999998 5667777899999999999999999866 67899999999999999
Q ss_pred CCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCC---C
Q 037759 221 PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHP---C 293 (479)
Q Consensus 221 ~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~---~ 293 (479)
|.++.+|+..|+++++|++|++++|.+..+| ..++++++|++|+++ +|.... | .++++++|+.+++.+. .
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS---HNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC---SSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC---CCcccccCchhhcccccCCEEEccCCcccc
Confidence 9999999864599999999999999999887 569999999999999 988776 5 6779999999998862 1
Q ss_pred CChhhhc--CCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC-------------CCCccEEEe-------
Q 037759 294 CCPEDIL--GRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK-------------IPRRSNIIL------- 351 (479)
Q Consensus 294 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------------lp~L~~L~l------- 351 (479)
..... + ..+++|+.|+++++. .....+..+..+++|+.|.+.+..+ .++|+.|++
T Consensus 160 ~~~~~-~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 160 LKSEE-LDIFANSSLKKLELSSNQ--IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp BCHHH-HGGGTTCEESEEECTTCC--CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred cCHHH-hhccccccccEEECCCCc--ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 22222 3 356899999998765 4444445556666666666544111 134555555
Q ss_pred ----eccccc-CcceEEEEecccCCCCCccccccCccCceEEeccC-----------CCCCcceEeeccCCCCC-----e
Q 037759 352 ----AKYQFP-PSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSD-----------GFPKLKVLHLKSMLWLQ-----E 410 (479)
Q Consensus 352 ----~~~~lp-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~-----------~~~~L~~L~l~~~~~l~-----~ 410 (479)
++..++ ++|+.|++++|.+.......++.+++|+.++++.+ .+++|+.|.+.++..-. .
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 222331 23777777777766555555667777777766543 24566666665422111 1
Q ss_pred eEE----cCCCCCCccEeEEecCCCCCCC-cccccCCCCCCEEEeeCCc
Q 037759 411 WTM----GIRAMPKLECSILNPCAHLKMI-PEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 411 ~~~----~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 454 (479)
++. ..+.+++|+.|++.+| .++.+ |..+..+++|+.|++++|.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCc
Confidence 111 2345677777777775 34443 3456667777777776653
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=2e-21 Score=212.79 Aligned_cols=302 Identities=19% Similarity=0.174 Sum_probs=192.3
Q ss_pred CCCCeEEEEEEcCCCCccc-cccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccc
Q 037759 136 LWENVKRFTVHGNLNDFEF-LDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVF 211 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~ 211 (479)
.++.+++|.+. .+.+..+ +..+ +++|+.|.+.+|.. ...+.+..|.++++|++|+|++|.+..+ |..|++++
T Consensus 22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 56789999999 5555544 5566 99999999999964 4455578899999999999999999865 88999999
Q ss_pred cCCeeecCCCCCcc-CChh-HHhcCcCCcEEecCCCcccccc--hhhhcCccCcEEEeccCCCCCCCC--C-CCCCC--c
Q 037759 212 LLRYLNLNIPSLKS-LPSS-LLNSLLNLYTLDMPFSYIDHTA--DEFWKMSKLRYLNFGSITLSAHPG--K-YCGSL--E 282 (479)
Q Consensus 212 ~L~~L~L~~~~l~~-lp~~-i~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L--~ 282 (479)
+|++|++++|.+.. +|.. .|+++++|++|++++|.+..++ ..++++++|++|+++ +|.... | .++.+ +
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls---~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS---SNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE---SSCCCCCCSGGGHHHHHC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC---CCcCCeeCHHHcccccCC
Confidence 99999999999885 5554 2389999999999999887763 569999999999999 887655 4 55544 5
Q ss_pred ccCeeecCCC---CCChhhhcCCCCC------CCeEEEEeCCccchHHHHHH----------------------------
Q 037759 283 NLDFISALHP---CCCPEDILGRLPN------LQNIQIWGDLIYYQSLLSKI---------------------------- 325 (479)
Q Consensus 283 ~L~~l~~~~~---~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~---------------------------- 325 (479)
.|+.+++... ...... ++.+++ |+.|+++++. .....+..
T Consensus 175 ~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp SSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred ccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 5555555531 111222 233322 6666666442 11111111
Q ss_pred --------hcc--CCCccEEEeecCC-------C---CCCccEEEe-----------ecccccCcceEEEEecccCCCCC
Q 037759 326 --------LYR--LSCLESLKLAKES-------K---IPRRSNIIL-----------AKYQFPPSLTHLSFLNIELMDDP 374 (479)
Q Consensus 326 --------l~~--l~~L~~L~l~~~~-------~---lp~L~~L~l-----------~~~~lp~~L~~L~l~~~~l~~~~ 374 (479)
+.. .++|+.|++++.. . +++|+.|++ .+..+ ++|++|++++|.+....
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccC
Confidence 111 1456666665411 1 145555555 23345 66666666666665555
Q ss_pred ccccccCccCceEEeccCC-----------CCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcc------
Q 037759 375 MPALEKLAVLRKLACSSDG-----------FPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPE------ 437 (479)
Q Consensus 375 ~~~l~~l~~L~~l~~~~~~-----------~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~------ 437 (479)
...++.+++|+.++++.+. +++|+.|.++++ .+..+ ..+++|+.|.+.+| .++.+|.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i----~~~~~L~~L~l~~N-~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTI----HFIPSIPDIFLSGN-KLVTLPKINLTAN 404 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCC----SSCCSCSEEEEESC-CCCCCCCCCTTCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcc----cCCCCcchhccCCC-Ccccccccccccc
Confidence 5556666666666655322 345555555543 22222 12445555555542 3333332
Q ss_pred ----------------cccCCCCCCEEEeeCCc
Q 037759 438 ----------------QLWCLKSLNKLELWWPE 454 (479)
Q Consensus 438 ----------------~l~~l~~L~~L~l~~c~ 454 (479)
.+..+++|+.|++++|.
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 23467888888888775
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3.1e-22 Score=194.95 Aligned_cols=228 Identities=20% Similarity=0.195 Sum_probs=177.6
Q ss_pred cCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEe
Q 037759 186 MFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNF 265 (479)
Q Consensus 186 ~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 265 (479)
...++++|++++|.++.+|..++++++|++|++++|.++.+|..+ +++++|++|++++|.+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 357899999999999999999999999999999999999999888 9999999999999988899999999999999999
Q ss_pred ccCCCCCCCC--C-CCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC
Q 037759 266 GSITLSAHPG--K-YCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK 342 (479)
Q Consensus 266 ~~~~~~~~~~--p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 342 (479)
+ +|.... | .++.. ..... ++.+++|+.|+++++. .. .++..+..+++|++|+++++.+
T Consensus 158 ~---~n~~~~~~p~~~~~~------------~~~~~-~~~l~~L~~L~L~~n~--l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 158 R---ACPELTELPEPLAST------------DASGE-HQGLVNLQSLRLEWTG--IR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp E---EETTCCCCCSCSEEE------------C-CCC-EEESTTCCEEEEEEEC--CC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred C---CCCCccccChhHhhc------------cchhh-hccCCCCCEEECcCCC--cC-cchHhhcCCCCCCEEEccCCCC
Confidence 9 876554 4 43210 11122 5667888888888765 33 5556677778888888876322
Q ss_pred C--CCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCC
Q 037759 343 I--PRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPK 420 (479)
Q Consensus 343 l--p~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 420 (479)
- |. .+..+ ++|++|++++|.+.......+ ..+++|+.|++.+|.....++...+.+++
T Consensus 219 ~~l~~------~l~~l-~~L~~L~Ls~n~~~~~~p~~~-------------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 219 SALGP------AIHHL-PKLEELDLRGCTALRNYPPIF-------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp CCCCG------GGGGC-TTCCEEECTTCTTCCBCCCCT-------------TCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CcCch------hhccC-CCCCEEECcCCcchhhhHHHh-------------cCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 1 21 23344 888888888887654433333 33567888888888777777777788999
Q ss_pred ccEeEEecCCCCCCCcccccCCCCCCEEEeeCC
Q 037759 421 LECSILNPCAHLKMIPEQLWCLKSLNKLELWWP 453 (479)
Q Consensus 421 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 453 (479)
|+.|++++|+.++.+|..+.++++|+.+.+...
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 999999999999999999999999999998753
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.7e-21 Score=193.00 Aligned_cols=256 Identities=15% Similarity=0.110 Sum_probs=211.7
Q ss_pred cCCceeEEEecCCcCccCchh-hcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEE
Q 037759 186 MFKFLRVLDLGSLVLIRYPSE-IEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYL 263 (479)
Q Consensus 186 ~l~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L 263 (479)
.++++++|+++++.++.+|.. +..+++|++|++++|.++.+++..|+++++|++|++++|.+..+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468899999999999999876 6889999999999999999887555999999999999999998865 48999999999
Q ss_pred EeccCCCCCCCC-C-C-CCCCcccCeeecCCC---CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEe
Q 037759 264 NFGSITLSAHPG-K-Y-CGSLENLDFISALHP---CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKL 337 (479)
Q Consensus 264 ~l~~~~~~~~~~-p-~-i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 337 (479)
+++ +|.... | . +.++++|+.+++.+. ...... ++.+++|+.|+++++. .... .+..+++|+.|++
T Consensus 123 ~L~---~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 123 VLE---RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNR--LTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp ECC---SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSC--CSBC---CGGGCTTCSEEEC
T ss_pred ECC---CCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCc--CCcc---ccccccccceeec
Confidence 999 998778 7 5 468999999998862 223344 7889999999999776 3322 3667899999999
Q ss_pred ecCCC-----CCCccEEEe---ecc----cccCcceEEEEecccCCCCCccccccCccCceEEeccCC-----------C
Q 037759 338 AKESK-----IPRRSNIIL---AKY----QFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDG-----------F 394 (479)
Q Consensus 338 ~~~~~-----lp~L~~L~l---~~~----~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~-----------~ 394 (479)
++..+ .++|+.|++ .+. ..+++|+.|++++|.++.. +.++.+++|+.++++.+. +
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 87332 248888887 111 2227899999999998654 678899999999887643 6
Q ss_pred CCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 395 PKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 395 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
++|+.|.+.++ .+..++.....+++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 272 ~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 272 QRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 78999999985 57888877778999999999996 788999888899999999999997
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=214.04 Aligned_cols=186 Identities=18% Similarity=0.164 Sum_probs=144.0
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-CccC-chhhcccccCCeeecC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIRY-PSEIEYVFLLRYLNLN 219 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~~l~~L~~L~~L~L~ 219 (479)
.+... ......+|. ..++++.|++++|. +..+.+..|.++++|++|++++|. +..+ |..|.++++|++|+|+
T Consensus 8 ~~dcs-~~~L~~vP~-lp~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYR-FCNLTQVPQ-VLNTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEES-CCCSSCCCS-SCTTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEcc-CCCCCCCCC-CCCCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 34444 556666887 78999999999998 666777889999999999999996 4466 7889999999999999
Q ss_pred CCCCccCChhHHhcCcCCcEEecCCCcccc-cchh--hhcCccCcEEEeccCCCCCCCC--C--CCCCCcccCeeecCCC
Q 037759 220 IPSLKSLPSSLLNSLLNLYTLDMPFSYIDH-TADE--FWKMSKLRYLNFGSITLSAHPG--K--YCGSLENLDFISALHP 292 (479)
Q Consensus 220 ~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~~--p--~i~~L~~L~~l~~~~~ 292 (479)
+|.+..+++..|+++++|++|++++|.+.. +|.. ++++++|++|+++ +|.... + .++++++|+.+++++.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls---~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS---KNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE---SCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC---CCcccccccchhHhhCCCCCEEECCCC
Confidence 999998744444999999999999998775 5554 8999999999999 988766 3 5779999999988762
Q ss_pred ---CCChhhhcCCC--CCCCeEEEEeCCccchHHHHHHhccCC------CccEEEeec
Q 037759 293 ---CCCPEDILGRL--PNLQNIQIWGDLIYYQSLLSKILYRLS------CLESLKLAK 339 (479)
Q Consensus 293 ---~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~l~~l~------~L~~L~l~~ 339 (479)
...... ++.+ ++|+.|+++++. .....+..+..++ .|++|++++
T Consensus 159 ~i~~~~~~~-l~~l~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 159 QIFLVCEHE-LEPLQGKTLSFFSLAANS--LYSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp CCCCCCSGG-GHHHHHCSSCCCEECCSB--SCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred cCCeeCHHH-cccccCCccceEECCCCc--cccccccchhhcCCccccCceeEEecCC
Confidence 223344 5555 789999999765 4333333333333 388888876
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=7.1e-21 Score=193.64 Aligned_cols=285 Identities=17% Similarity=0.084 Sum_probs=205.7
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLR 214 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~ 214 (479)
..+.++.+.+. ++....+|.-. +++|+.|.+.+|.. ..+ .+..+++|++|++++|.++.+| ++++++|+
T Consensus 40 ~l~~L~~L~Ls-~n~l~~~~~l~~l~~L~~L~Ls~n~l----~~~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCH-NSSITDMTGIEKLTGLTKLICTSNNI----TTL---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECC-SSCCCCCTTGGGCTTCSEEECCSSCC----SCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred HcCCCCEEEcc-CCCcccChhhcccCCCCEEEccCCcC----CeE---ccccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 46788899998 66666666322 89999999999984 333 2788999999999999998875 88999999
Q ss_pred eeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCCC-CCCCCcccCeeecCCCC
Q 037759 215 YLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPGK-YCGSLENLDFISALHPC 293 (479)
Q Consensus 215 ~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p-~i~~L~~L~~l~~~~~~ 293 (479)
+|++++|.++.+| + +++++|++|++++|.+..++ ++.+++|++|+++ +|..... .++.++.|+.+++.+..
T Consensus 110 ~L~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~---~n~~~~~~~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH---LNKKITKLDVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECT---TCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEEECC---CCCcccccccccCCcCCEEECCCCc
Confidence 9999999999886 5 89999999999999888885 8889999999999 8754443 56677888888887632
Q ss_pred CChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCC
Q 037759 294 CCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDD 373 (479)
Q Consensus 294 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~ 373 (479)
..--. ++.+++|+.|+++++. .... .+..+++|+.|++++..+ +.+ .+..+ ++|+.|++++|.++..
T Consensus 182 l~~l~-l~~l~~L~~L~l~~N~--l~~~---~l~~l~~L~~L~Ls~N~l----~~i--p~~~l-~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 ITELD-VSQNKLLNRLNCDTNN--ITKL---DLNQNIQLTFLDCSSNKL----TEI--DVTPL-TQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCCCC-CTTCTTCCEEECCSSC--CSCC---CCTTCTTCSEEECCSSCC----SCC--CCTTC-TTCSEEECCSSCCSCC
T ss_pred cceec-cccCCCCCEEECcCCc--CCee---ccccCCCCCEEECcCCcc----ccc--Ccccc-CCCCEEEeeCCcCCCc
Confidence 22234 6778889999998765 3332 367788888888887222 111 22344 7888888888887665
Q ss_pred CccccccCc-------cCceEEecc---------CCCCCcceEeeccCCCCCeeEEc--------CCCCCCccEeEEecC
Q 037759 374 PMPALEKLA-------VLRKLACSS---------DGFPKLKVLHLKSMLWLQEWTMG--------IRAMPKLECSILNPC 429 (479)
Q Consensus 374 ~~~~l~~l~-------~L~~l~~~~---------~~~~~L~~L~l~~~~~l~~~~~~--------~~~~~~L~~L~l~~c 429 (479)
+...+..+. +|+.++++. ..+++|+.|+++++..+..++.. ...+++|+.|++.+
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~- 327 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN- 327 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-
Confidence 543333332 223333332 23578888888888766666542 23457778888877
Q ss_pred CCCCCCcccccCCCCCCEEEeeCCc
Q 037759 430 AHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 430 ~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
++++.++ +..+++|+.|+++++.
T Consensus 328 N~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 328 TELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCSCCC--CTTCTTCSEEECCSSC
T ss_pred Ccccccc--cccCCcCcEEECCCCC
Confidence 4677764 7888999999998776
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=9.2e-22 Score=200.38 Aligned_cols=292 Identities=14% Similarity=0.145 Sum_probs=224.3
Q ss_pred CCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cC-chhhcccccCCeeecCCCCCcc
Q 037759 148 NLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RY-PSEIEYVFLLRYLNLNIPSLKS 225 (479)
Q Consensus 148 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l-p~~l~~L~~L~~L~L~~~~l~~ 225 (479)
+.....+|. +.++++.|.+.++. +....+..|.++++|++|++++|.+. .+ |..+.++++|++|++++|.+..
T Consensus 19 ~~~l~~lp~-l~~~l~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 19 NRGLHQVPE-LPAHVNYVDLSLNS----IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp SSCCSSCCC-CCTTCCEEECCSSC----CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CCCcccCCC-CCCccCEEEecCCc----cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 455555666 67899999999998 56677788999999999999999986 55 5679999999999999999997
Q ss_pred C-ChhHHhcCcCCcEEecCCCcccc-cchh--hhcCccCcEEEeccCCCCCCCC--C-C-CCCCcccCeeecCCCC---C
Q 037759 226 L-PSSLLNSLLNLYTLDMPFSYIDH-TADE--FWKMSKLRYLNFGSITLSAHPG--K-Y-CGSLENLDFISALHPC---C 294 (479)
Q Consensus 226 l-p~~i~~~l~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~~--p-~-i~~L~~L~~l~~~~~~---~ 294 (479)
+ |..+ +++++|++|++++|.+.. +|.. ++++++|++|+++ +|.... | . +.+++.|+.+++.+.. .
T Consensus 94 ~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 94 LETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR---DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp ECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC---SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cChhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC---CCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 7 5556 999999999999998875 4444 8999999999999 988777 5 4 6689999999988622 2
Q ss_pred ChhhhcCCC--CCCCeEEEEeCCccchH--------HHHHHhccCCCccEEEeecCCCC-------------CCccEEEe
Q 037759 295 CPEDILGRL--PNLQNIQIWGDLIYYQS--------LLSKILYRLSCLESLKLAKESKI-------------PRRSNIIL 351 (479)
Q Consensus 295 ~~~~~l~~l--~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~L~~L~l~~~~~l-------------p~L~~L~l 351 (479)
.... +..+ ++|+.|++.++. ... .....+..+++|++|++++..+. ++++.|.+
T Consensus 170 ~~~~-l~~l~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 170 CEED-LLNFQGKHFTLLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CTTT-SGGGTTCEEEEEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred Chhh-hhccccccccccccccCc--ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 2233 4443 577788887554 221 11122345678999999874331 57777766
Q ss_pred e---------------------cc--cccCcceEEEEecccCCCCCccccccCccCceEEeccC-----------CCCCc
Q 037759 352 A---------------------KY--QFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSD-----------GFPKL 397 (479)
Q Consensus 352 ~---------------------~~--~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~-----------~~~~L 397 (479)
. +. .. ++|+.|++++|.+.......++.+++|+.++++.+ .+++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccchhhhccCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 1 00 12 58999999999988776777889999999988653 35789
Q ss_pred ceEeeccCCCCCeeE-EcCCCCCCccEeEEecCCCCCCC-cccccCCCCCCEEEeeCCc
Q 037759 398 KVLHLKSMLWLQEWT-MGIRAMPKLECSILNPCAHLKMI-PEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 398 ~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 454 (479)
+.|+++++ .+..++ ...+.+++|+.|++++| .++.+ |..+..+++|+.|++++|.
T Consensus 326 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 326 LKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc
Confidence 99999886 456553 33567899999999996 56655 6788999999999999986
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=198.89 Aligned_cols=140 Identities=17% Similarity=0.126 Sum_probs=116.0
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeecC
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLN 219 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~ 219 (479)
+.+.+. ++....+|..+.++++.|.+.+|. +....+..|..+++|++|++++|.++.+ |..++++++|++|+++
T Consensus 3 ~~l~ls-~n~l~~ip~~~~~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRS-KNGLIHVPKDLSQKTTILNISQNY----ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECT-TSCCSSCCCSCCTTCSEEECCSSC----CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecC-CCCcccccccccccccEEECCCCc----ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 456777 666677887778999999999998 6667788999999999999999999976 7899999999999999
Q ss_pred CCCCccCChhHHhcCcCCcEEecCCCcccc--cchhhhcCccCcEEEeccCCCCCCCCCCCCCCccc--CeeecCC
Q 037759 220 IPSLKSLPSSLLNSLLNLYTLDMPFSYIDH--TADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENL--DFISALH 291 (479)
Q Consensus 220 ~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L--~~l~~~~ 291 (479)
+|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|+++ +|......+..++.| +.+++.+
T Consensus 78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~---~n~l~~~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS---TTHLEKSSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE---ESSCCGGGGGGGTTSCEEEEEEEE
T ss_pred CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEec---CcccchhhccccccceeeEEEeec
Confidence 9999999975 79999999999998876 57889999999999999 876544122333444 6655543
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=186.44 Aligned_cols=262 Identities=16% Similarity=0.075 Sum_probs=183.0
Q ss_pred EEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeecCCC
Q 037759 143 FTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNIP 221 (479)
Q Consensus 143 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~~ 221 (479)
.... ++....+|..+.++|+.|.+.++. +..+.+..|.++++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 36 c~~~-~~~l~~iP~~~~~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 36 CKGS-SGSLNSIPSGLTEAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EECC-STTCSSCCTTCCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eeCC-CCCcccccccccccCcEEECCCCc----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3444 666677888778899999999998 5566667899999999999999999976 567999999999999999
Q ss_pred CCccCChhHHhcCcCCcEEecCCCcccccch--hhhcCccCcEEEeccCCCCCCC-C--C-CCCCCcccCeeecCCC---
Q 037759 222 SLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD--EFWKMSKLRYLNFGSITLSAHP-G--K-YCGSLENLDFISALHP--- 292 (479)
Q Consensus 222 ~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~-~--p-~i~~L~~L~~l~~~~~--- 292 (479)
.++.+|...|+++++|++|++++|.+..+|. .+.++++|++|+++ +|... . + .++.++.|+.+++.+.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~---~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG---NMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE---ESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC---CCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 9999999865999999999999999999987 68999999999999 87433 3 3 5556666666666541
Q ss_pred CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCC
Q 037759 293 CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMD 372 (479)
Q Consensus 293 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~ 372 (479)
...+.. ++.+++|+.|+++++. ........+..+ ++|+.|++++|.++.
T Consensus 188 ~~~~~~-l~~l~~L~~L~l~~n~--l~~~~~~~~~~~----------------------------~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 188 SYEPKS-LKSIQNVSHLILHMKQ--HILLLEIFVDVT----------------------------SSVECLELRDTDLDT 236 (353)
T ss_dssp EECTTT-TTTCSEEEEEEEECSC--STTHHHHHHHHT----------------------------TTEEEEEEESCBCTT
T ss_pred ccCHHH-HhccccCCeecCCCCc--cccchhhhhhhc----------------------------ccccEEECCCCcccc
Confidence 112334 6666666666666554 322222222233 566666666666654
Q ss_pred CCccccccCccCceEEeccCCCCCcceEeeccCC----CCCeeEEcCCCCCCccEeEEecCCCCCCCcccc-cCCCCCCE
Q 037759 373 DPMPALEKLAVLRKLACSSDGFPKLKVLHLKSML----WLQEWTMGIRAMPKLECSILNPCAHLKMIPEQL-WCLKSLNK 447 (479)
Q Consensus 373 ~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~ 447 (479)
.....+... ...+.++.+.+.++. .+..++...+.+++|+.|++++| .++.+|..+ ..+++|+.
T Consensus 237 ~~~~~l~~~----------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 237 FHFSELSTG----------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp CCCC----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccccccc----------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCE
Confidence 443322211 112344444444431 01122223356789999999985 688888764 78999999
Q ss_pred EEeeCCc
Q 037759 448 LELWWPE 454 (479)
Q Consensus 448 L~l~~c~ 454 (479)
|++++|+
T Consensus 306 L~L~~N~ 312 (353)
T 2z80_A 306 IWLHTNP 312 (353)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 9999875
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.8e-20 Score=197.50 Aligned_cols=256 Identities=15% Similarity=0.115 Sum_probs=212.2
Q ss_pred cCCceeEEEecCCcCccCchh-hcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEE
Q 037759 186 MFKFLRVLDLGSLVLIRYPSE-IEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYL 263 (479)
Q Consensus 186 ~l~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L 263 (479)
.+.++++|+++++.+..+|.. +.++++|++|++++|.+..+|+..|+++++|++|++++|.+..+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 367899999999999988865 68899999999999999998874449999999999999999988765 7999999999
Q ss_pred EeccCCCCCCCC-C-C-CCCCcccCeeecCCC---CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEe
Q 037759 264 NFGSITLSAHPG-K-Y-CGSLENLDFISALHP---CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKL 337 (479)
Q Consensus 264 ~l~~~~~~~~~~-p-~-i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 337 (479)
+++ +|.... | . ++++..|+.++++++ ...+.. ++.+++|+.|++++|. .... .+..+++|+.|++
T Consensus 129 ~L~---~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~--l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 129 VLE---RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNR--LTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp ECC---SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSC--CSBC---CGGGCTTCSEEEC
T ss_pred Eee---CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCC--CCCc---Chhhhhhhhhhhc
Confidence 999 998778 7 5 479999999999862 223445 8899999999999775 3322 3567899999999
Q ss_pred ecCCC-----CCCccEEEe---e----cccccCcceEEEEecccCCCCCccccccCccCceEEeccCC-----------C
Q 037759 338 AKESK-----IPRRSNIIL---A----KYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDG-----------F 394 (479)
Q Consensus 338 ~~~~~-----lp~L~~L~l---~----~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~-----------~ 394 (479)
+++.+ .++|+.|++ . ....|++|+.|++++|.++. .+.++.+++|+.|+++.+. +
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 87322 248888887 1 12334789999999999865 4678899999999887643 5
Q ss_pred CCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 395 PKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 395 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
++|+.|+++++ .+..++...+.+++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 278 ~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 278 QRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred cCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence 78999999985 57888877778999999999996 688999889999999999999997
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=4.2e-21 Score=187.32 Aligned_cols=284 Identities=15% Similarity=0.121 Sum_probs=199.9
Q ss_pred CeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeee
Q 037759 139 NVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLN 217 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~ 217 (479)
.++.+.+. +.....+|..+.++++.|.+.++. +..+.+..|.++++|++|++++|.++.+ |..++++++|++|+
T Consensus 34 ~l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCS-DLGLKAVPKEISPDTTLLDLQNND----ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECC-SSCCSSCCSCCCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECC-CCCccccCCCCCCCCeEEECCCCc----CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 45677777 666777887778899999999998 5566677899999999999999999866 78899999999999
Q ss_pred cCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC----C-CCCCCcccCeeecCC
Q 037759 218 LNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG----K-YCGSLENLDFISALH 291 (479)
Q Consensus 218 L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~----p-~i~~L~~L~~l~~~~ 291 (479)
+++|.++.+|..+ . ++|++|++++|.+..+|.. +..+++|++|+++ +|.... | .+..+ .|+.+++.+
T Consensus 109 L~~n~l~~l~~~~-~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG---GNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp CCSSCCCSCCSSC-C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC---SCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCCCcCCccCccc-c--ccCCEEECCCCccCccCHhHhCCCccCCEEECC---CCccccCCCCcccccCC-ccCEEECcC
Confidence 9999999999877 4 8999999999999999864 8999999999999 887642 4 55555 777777765
Q ss_pred CC--CChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC---CCCccEEEeecccccCcceEEEEe
Q 037759 292 PC--CCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK---IPRRSNIILAKYQFPPSLTHLSFL 366 (479)
Q Consensus 292 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---lp~L~~L~l~~~~lp~~L~~L~l~ 366 (479)
.. ..+.. + .++|+.|+++++. .....+..+..+++|++|+++++.+ .+. ++..+ ++|++|+++
T Consensus 182 n~l~~l~~~-~--~~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~------~~~~l-~~L~~L~L~ 249 (332)
T 2ft3_A 182 AKLTGIPKD-L--PETLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGHNQIRMIENG------SLSFL-PTLRELHLD 249 (332)
T ss_dssp SBCSSCCSS-S--CSSCSCCBCCSSC--CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT------GGGGC-TTCCEEECC
T ss_pred CCCCccCcc-c--cCCCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCCcCCcCChh------HhhCC-CCCCEEECC
Confidence 21 12222 2 2678888888766 4444445677778888888876222 121 23344 788888888
Q ss_pred cccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCC--CCCcccccCCCC
Q 037759 367 NIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHL--KMIPEQLWCLKS 444 (479)
Q Consensus 367 ~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--~~lp~~l~~l~~ 444 (479)
+|.++..+ ..++.+++|+.++++.+.+..+..-.+..+. ....+++|+.|++.+++.. ...|..+..+++
T Consensus 250 ~N~l~~lp-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 250 NNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVG-------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp SSCCCBCC-TTGGGCTTCCEEECCSSCCCBCCTTSSSCSS-------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred CCcCeecC-hhhhcCccCCEEECCCCCCCccChhHccccc-------cccccccccceEeecCcccccccCcccccccch
Confidence 88875322 2355566665555555544332211111100 0112678999999997643 345667888999
Q ss_pred CCEEEeeCCc
Q 037759 445 LNKLELWWPE 454 (479)
Q Consensus 445 L~~L~l~~c~ 454 (479)
|+.+++++|.
T Consensus 322 L~~l~l~~n~ 331 (332)
T 2ft3_A 322 RLAIQFGNYK 331 (332)
T ss_dssp STTEEC----
T ss_pred hhhhhccccc
Confidence 9999999875
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=197.45 Aligned_cols=277 Identities=17% Similarity=0.098 Sum_probs=200.2
Q ss_pred CCCeEEEEEEcCCCCcccc-ccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhccccc
Q 037759 137 WENVKRFTVHGNLNDFEFL-DHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~~ 212 (479)
+..++.|.+. ++....++ ..+ +++|+.|.+.+|. +..+.+..|.++++|++|+|++|.++.+|. .+.++++
T Consensus 31 ~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNENI----VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCcEEECC-CCccceECHhHccCCCCCCEEECCCCc----cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 4678899998 66665554 455 8999999999987 566667889999999999999999998875 4788999
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeee
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFIS 288 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~ 288 (479)
|++|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|+++ +|.... | .+.+++.|+.++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE---KCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE---SCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC---CCcCcccChhHhcccCCCcEEe
Confidence 999999999998776555599999999999999887775 468899999999999 887777 5 567888888888
Q ss_pred cCCC---CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEe-ecccccCcceEEE
Q 037759 289 ALHP---CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIIL-AKYQFPPSLTHLS 364 (479)
Q Consensus 289 ~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l-~~~~lp~~L~~L~ 364 (479)
+.+. ...... +..+++|+.|+++++. ....++.......+|++|++++..+- .+.. .+..+ ++|+.|+
T Consensus 183 l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l-~~L~~L~ 254 (477)
T 2id5_A 183 LRHLNINAIRDYS-FKRLYRLKVLEISHWP--YLDTMTPNCLYGLNLTSLSITHCNLT----AVPYLAVRHL-VYLRFLN 254 (477)
T ss_dssp EESCCCCEECTTC-SCSCTTCCEEEEECCT--TCCEECTTTTTTCCCSEEEEESSCCC----SCCHHHHTTC-TTCCEEE
T ss_pred CCCCcCcEeChhh-cccCcccceeeCCCCc--cccccCcccccCccccEEECcCCccc----ccCHHHhcCc-cccCeeE
Confidence 7752 122334 7788899999999765 44444444444558888888873221 0000 12334 6777777
Q ss_pred EecccCCCCCccccccCccCceEEeccC-----------CCCCcceEeeccCCCCCeeEEc-CCCCCCccEeEEecCC
Q 037759 365 FLNIELMDDPMPALEKLAVLRKLACSSD-----------GFPKLKVLHLKSMLWLQEWTMG-IRAMPKLECSILNPCA 430 (479)
Q Consensus 365 l~~~~l~~~~~~~l~~l~~L~~l~~~~~-----------~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~ 430 (479)
+++|.+.......+..+++|+.+.++.+ .+++|+.|+++++ .+..++.. ...+++|+.|++.+++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 7777766555555667777777766543 2466777777764 45555432 3457888888888754
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=9.9e-21 Score=198.10 Aligned_cols=140 Identities=19% Similarity=0.153 Sum_probs=118.0
Q ss_pred eEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeec
Q 037759 140 VKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNL 218 (479)
Q Consensus 140 ~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L 218 (479)
.+++.+. ++....+|..+.++++.|.+.+|. +..+.+..|.++++|++|++++|.++.+ |..+.++++|++|++
T Consensus 33 ~~~l~ls-~~~L~~ip~~~~~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYS-NRNLTHVPKDLPPRTKALSLSQNS----ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECT-TSCCCSCCTTSCTTCCEEECCSSC----CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEcC-CCCCccCCCCCCCCcCEEECCCCC----ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3788888 777777888778999999999998 5667778899999999999999999976 678999999999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccc--hhhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecCC
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA--DEFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISALH 291 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~~ 291 (479)
++|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|+++ ++.... . .+.++ .|+.+++++
T Consensus 108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~---~n~l~~~~~~~l~~L-~L~~L~L~~ 178 (562)
T 3a79_B 108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS---AAKFRQLDLLPVAHL-HLSCILLDL 178 (562)
T ss_dssp TTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE---CSBCCTTTTGGGTTS-CEEEEEEEE
T ss_pred CCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecC---CCccccCchhhhhhc-eeeEEEeec
Confidence 99999999975 7999999999999988865 789999999999999 876544 2 33344 336666554
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=2.4e-20 Score=189.70 Aligned_cols=262 Identities=17% Similarity=0.074 Sum_probs=201.4
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.++.. ..++ .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| + +++++|+
T Consensus 41 l~~L~~L~Ls~n~l----~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSI----TDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCC----CCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCC
T ss_pred cCCCCEEEccCCCc----ccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCC
Confidence 89999999999974 4442 6899999999999999999886 899999999999999999986 6 9999999
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCC-CCChhhhcCCCCCCCeEEEEeCCcc
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHP-CCCPEDILGRLPNLQNIQIWGDLIY 317 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 317 (479)
+|++++|.+..+| ++.+++|++|+++ +|....-.++.++.|+.+++... ...... ++.+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~---~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-- 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCA---RNTLTEIDVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-- 181 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECT---TSCCSCCCCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC--
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECC---CCccceeccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc--
Confidence 9999999999886 8999999999999 87655413456778888888763 122225 7889999999999776
Q ss_pred chHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCC----
Q 037759 318 YQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDG---- 393 (479)
Q Consensus 318 ~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~---- 393 (479)
... ++ +..+++|+.|++++..+ +.+ .+..+ ++|+.|++++|.++.. + ++.+++|+.++++.+.
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l----~~~--~l~~l-~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNI----TKL--DLNQN-IQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCC----SCC--CCTTC-TTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCC
T ss_pred cce-ec--cccCCCCCEEECcCCcC----Cee--ccccC-CCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCc
Confidence 333 22 67788999999876322 111 34456 9999999999998774 3 7789999999887644
Q ss_pred ----CCCcc----------eEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcc--------cccCCCCCCEEEee
Q 037759 394 ----FPKLK----------VLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPE--------QLWCLKSLNKLELW 451 (479)
Q Consensus 394 ----~~~L~----------~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~--------~l~~l~~L~~L~l~ 451 (479)
+++|+ .|.+.++..+..++ .+.+++|+.|++++|+.++.+|. .+...++|+.|+++
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 45554 44455555455554 45789999999999987776663 24456778888887
Q ss_pred CCc
Q 037759 452 WPE 454 (479)
Q Consensus 452 ~c~ 454 (479)
+|.
T Consensus 327 ~N~ 329 (457)
T 3bz5_A 327 NTE 329 (457)
T ss_dssp TCC
T ss_pred CCc
Confidence 765
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.6e-20 Score=181.52 Aligned_cols=287 Identities=15% Similarity=0.104 Sum_probs=188.7
Q ss_pred CeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeee
Q 037759 139 NVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLN 217 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~ 217 (479)
.++.+.+. +.....+|..+.+.++.|.+.++. +..+.+..|.++++|++|++++|.++.+ |..++++++|++|+
T Consensus 32 ~l~~l~~~-~~~l~~lp~~~~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCS-DLGLEKVPKDLPPDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECT-TSCCCSCCCSCCTTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEec-CCCccccCccCCCCCeEEECCCCc----CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 45566666 556666777778899999999987 5556666789999999999999998866 78899999999999
Q ss_pred cCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC----C-CCCCCcccCeeecCC
Q 037759 218 LNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG----K-YCGSLENLDFISALH 291 (479)
Q Consensus 218 L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~----p-~i~~L~~L~~l~~~~ 291 (479)
+++|.++.+|..+ . ++|++|++++|.+..++. .+.++++|++|+++ +|.... + .+.+++.|+.+++.+
T Consensus 107 Ls~n~l~~l~~~~-~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 107 LSKNQLKELPEKM-P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG---TNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CCSSCCSBCCSSC-C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC---SSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CCCCcCCccChhh-c--ccccEEECCCCcccccCHhHhcCCccccEEECC---CCcCCccCcChhhccCCCCcCEEECCC
Confidence 9999999999876 3 789999999998888875 48899999999999 876542 3 455777777777765
Q ss_pred CCC-ChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEe-ecccccCcceEEEEeccc
Q 037759 292 PCC-CPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIIL-AKYQFPPSLTHLSFLNIE 369 (479)
Q Consensus 292 ~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l-~~~~lp~~L~~L~l~~~~ 369 (479)
... .++. ...++|+.|+++++. .....+..+..+++|++|++++..+- .+.- ++..+ ++|++|++++|.
T Consensus 181 n~l~~l~~--~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l-~~L~~L~L~~N~ 251 (330)
T 1xku_A 181 TNITTIPQ--GLPPSLTELHLDGNK--ITKVDAASLKGLNNLAKLGLSFNSIS----AVDNGSLANT-PHLRELHLNNNK 251 (330)
T ss_dssp SCCCSCCS--SCCTTCSEEECTTSC--CCEECTGGGTTCTTCCEEECCSSCCC----EECTTTGGGS-TTCCEEECCSSC
T ss_pred CccccCCc--cccccCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCCcCc----eeChhhccCC-CCCCEEECCCCc
Confidence 211 1111 122678888887665 44444556677777777777662221 1100 23344 777888888877
Q ss_pred CCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCC--CCCcccccCCCCCCE
Q 037759 370 LMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHL--KMIPEQLWCLKSLNK 447 (479)
Q Consensus 370 l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~ 447 (479)
++.. ...+..+++|+.++++.+.+..+..-.+... ......+.|+.|++.+++.. ...|..+..+.+++.
T Consensus 252 l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~-------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 252 LVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPP-------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp CSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCS-------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred CccC-ChhhccCCCcCEEECCCCcCCccChhhcCCc-------ccccccccccceEeecCcccccccCccccccccceeE
Confidence 6522 2234445555555554444333221111100 00113467888888875532 133567777888888
Q ss_pred EEeeCC
Q 037759 448 LELWWP 453 (479)
Q Consensus 448 L~l~~c 453 (479)
++++++
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 888765
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=6.9e-21 Score=185.38 Aligned_cols=122 Identities=22% Similarity=0.235 Sum_probs=57.1
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCe
Q 037759 138 ENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRY 215 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 215 (479)
..++.+.+. ++....+|..+ +++|+.|.+.+|.. . ..+..+..+++|++|++++|.+..+|..++++++|++
T Consensus 81 ~~l~~L~L~-~n~l~~lp~~l~~l~~L~~L~L~~n~l----~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELR-SVPLPQFPDQAFRLSHLQHMTIDAAGL----M-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEE-SSCCSSCCSCGGGGTTCSEEEEESSCC----C-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cceeEEEcc-CCCchhcChhhhhCCCCCEEECCCCCc----c-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 345555555 44444444444 44555555554442 2 1223344445555555555554444544555555555
Q ss_pred eecCCCC-CccCChhHHhc---------CcCCcEEecCCCcccccchhhhcCccCcEEEec
Q 037759 216 LNLNIPS-LKSLPSSLLNS---------LLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFG 266 (479)
Q Consensus 216 L~L~~~~-l~~lp~~i~~~---------l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 266 (479)
|++++|. +..+|..+ +. +++|++|++++|.+..+|..++++++|++|+++
T Consensus 155 L~L~~n~~~~~~p~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 155 LSIRACPELTELPEPL-ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp EEEEEETTCCCCCSCS-EEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE
T ss_pred EECCCCCCccccChhH-hhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc
Confidence 5554432 33444433 22 455555555555444455445555555555555
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.8e-21 Score=186.99 Aligned_cols=123 Identities=17% Similarity=0.140 Sum_probs=69.6
Q ss_pred CCeEEEEEEcCCCCc---cccccc--CCCccEEEEec-CCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cCchhhccc
Q 037759 138 ENVKRFTVHGNLNDF---EFLDHF--DSFLHSLLHLT-LGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RYPSEIEYV 210 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~---~~~~~~--~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~l~~L 210 (479)
.+++++.+. ++... .+|..+ +++|+.|.+.+ +. .....+..|.++++|++|++++|.+. .+|..+.++
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYIGGINN----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGGGGGCTTCSEEEEEEETT----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECC-CCCccCCcccChhHhCCCCCCeeeCCCCCc----ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 456666666 33332 345555 56666666653 33 22233445556666666666666655 555556666
Q ss_pred ccCCeeecCCCCCc-cCChhHHhcCcCCcEEecCCCccc-ccchhhhcCc-cCcEEEec
Q 037759 211 FLLRYLNLNIPSLK-SLPSSLLNSLLNLYTLDMPFSYID-HTADEFWKMS-KLRYLNFG 266 (479)
Q Consensus 211 ~~L~~L~L~~~~l~-~lp~~i~~~l~~L~~L~l~~~~l~-~lp~~~~~L~-~L~~L~l~ 266 (479)
++|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++.++ +|++|+++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred CCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 66666666666655 455555 66666666666666554 5555566655 56666666
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=3e-19 Score=189.14 Aligned_cols=131 Identities=15% Similarity=0.056 Sum_probs=104.8
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhccccc
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~~ 212 (479)
+..+++|.+. .+.+..++. .+ +++|+.|++.+|. +..+.+.+|.++++|++|+|++|+++.+|. .|.++++
T Consensus 51 p~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCc----CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 4578888888 666666664 45 8889999988887 666777788888999999999988887764 5788889
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccc--cchhhhcCccCcEEEeccCCCCCCCC
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDH--TADEFWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
|++|++++|.++.+|+..|+++++|++|++++|.+.. +|..++.+++|++|+++ +|....
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~---~N~l~~ 187 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS---SNKIQS 187 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC---SSCCCE
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc---Cccccc
Confidence 9999999988888887655888999999998887664 46778888899999988 776554
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2.4e-19 Score=182.15 Aligned_cols=279 Identities=19% Similarity=0.142 Sum_probs=194.9
Q ss_pred CCCeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcC-CceeEEEecCCcCccCchhhcccccCCe
Q 037759 137 WENVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMF-KFLRVLDLGSLVLIRYPSEIEYVFLLRY 215 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 215 (479)
++.++.+.+. ++....+|+. .++|+.|.+.+|... .+ ... ++|++|++++|.++.+| .++++++|++
T Consensus 90 ~~~L~~L~l~-~n~l~~lp~~-~~~L~~L~l~~n~l~----~l-----~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHLESLVAS-CNSLTELPEL-PQSLKSLLVDNNNLK----AL-----SDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CTTCSEEECC-SSCCSSCCCC-CTTCCEEECCSSCCS----CC-----CSCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred cCCCCEEEcc-CCcCCccccc-cCCCcEEECCCCccC----cc-----cCCCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 4678899988 6666656543 688999999988742 21 122 68999999999999888 5999999999
Q ss_pred eecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCC-C
Q 037759 216 LNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALH-P 292 (479)
Q Consensus 216 L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~-~ 292 (479)
|++++|.++.+|... .+|++|++++|.+..+| +++++++|++|+++ +|.... | .. ..|+.+++.+ .
T Consensus 158 L~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~---~N~l~~l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD---NNSLKKLPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp EECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC---SSCCSSCCCCC---TTCCEEECCSSC
T ss_pred EECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECC---CCcCCcCCCCc---CcccEEECcCCc
Confidence 999999999888543 58999999999888888 58999999999999 887766 6 43 3566666665 2
Q ss_pred CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecC------CCCCCccEEEe------ecccccCcc
Q 037759 293 CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKE------SKIPRRSNIIL------AKYQFPPSL 360 (479)
Q Consensus 293 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~------~~lp~L~~L~l------~~~~lp~~L 360 (479)
-..++. ++.+++|+.|+++++. ... ++ ..+++|++|+++++ ...++|+.|++ .+..+|++|
T Consensus 227 l~~lp~-~~~l~~L~~L~l~~N~--l~~-l~---~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L 299 (454)
T 1jl5_A 227 LEELPE-LQNLPFLTTIYADNNL--LKT-LP---DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299 (454)
T ss_dssp CSSCCC-CTTCTTCCEEECCSSC--CSS-CC---SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTC
T ss_pred CCcccc-cCCCCCCCEEECCCCc--CCc-cc---ccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcC
Confidence 224446 7889999999998765 322 11 12478999998872 22357888877 233555788
Q ss_pred eEEEEecccCCCCCccccccC-ccCceEEeccCC-------CCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCC
Q 037759 361 THLSFLNIELMDDPMPALEKL-AVLRKLACSSDG-------FPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHL 432 (479)
Q Consensus 361 ~~L~l~~~~l~~~~~~~l~~l-~~L~~l~~~~~~-------~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 432 (479)
+.|++++|.++. +..+ ++|+.++++.+. +++|+.|+++++ .++.++. .+++|+.|++++|.-.
T Consensus 300 ~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 300 YYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCS
T ss_pred CEEECcCCcCCc-----ccCCcCcCCEEECCCCccccccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCC
Confidence 999998887653 2234 478888877654 467888998875 4666654 5789999999986433
Q ss_pred C--CCcccccCC-------------CCCCEEEeeCCc
Q 037759 433 K--MIPEQLWCL-------------KSLNKLELWWPE 454 (479)
Q Consensus 433 ~--~lp~~l~~l-------------~~L~~L~l~~c~ 454 (479)
. .+|.++..+ ++|+.|++++++
T Consensus 371 ~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp SCCCCCTTCCEEECCC---------------------
T ss_pred cCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 3 466777666 789999999876
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=8.6e-20 Score=185.75 Aligned_cols=240 Identities=18% Similarity=0.139 Sum_probs=196.0
Q ss_pred eEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeec
Q 037759 140 VKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNL 218 (479)
Q Consensus 140 ~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L 218 (479)
.+.+... +.....+|..+.++++.|.+.+|. +..+.+..|.++++|++|+|++|.+..++ ..+.++++|++|++
T Consensus 56 ~~~v~c~-~~~l~~iP~~~~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCT-RRGLSEVPQGIPSNTRYLNLMENN----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECC-SSCCSSCCSCCCTTCSEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEEC-CCCcCccCCCCCCCccEEECcCCc----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4456666 666677888778899999999998 66677788999999999999999999664 78999999999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC--C--CCCCCcccCeeecCC-C
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG--K--YCGSLENLDFISALH-P 292 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~--p--~i~~L~~L~~l~~~~-~ 292 (479)
++|.++.+|...|+++++|++|++++|.+..+|. .+.++++|++|+++ +|.... + .+..+.+|+.+++++ .
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~---~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG---ELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC---CCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC---CCCCccccChhhccCCCCCCEEECCCCc
Confidence 9999999998866999999999999999999986 58999999999999 877666 4 566899999999886 2
Q ss_pred CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEe-ecccccCcceEEEEecccCC
Q 037759 293 CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIIL-AKYQFPPSLTHLSFLNIELM 371 (479)
Q Consensus 293 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l-~~~~lp~~L~~L~l~~~~l~ 371 (479)
-..+.. +..+++|+.|++++|. .....+..+..+++|+.|+++++.+- .+.- .+..+ ++|+.|++++|.++
T Consensus 208 l~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l-~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 208 IKDMPN-LTPLVGLEELEMSGNH--FPEIRPGSFHGLSSLKKLWVMNSQVS----LIERNAFDGL-ASLVELNLAHNNLS 279 (452)
T ss_dssp CSSCCC-CTTCTTCCEEECTTSC--CSEECGGGGTTCTTCCEEECTTSCCC----EECTTTTTTC-TTCCEEECCSSCCS
T ss_pred cccccc-ccccccccEEECcCCc--CcccCcccccCccCCCEEEeCCCcCc----eECHHHhcCC-CCCCEEECCCCcCC
Confidence 334456 8889999999999887 66666778889999999999873221 1100 23455 89999999999988
Q ss_pred CCCccccccCccCceEEeccCCCC
Q 037759 372 DDPMPALEKLAVLRKLACSSDGFP 395 (479)
Q Consensus 372 ~~~~~~l~~l~~L~~l~~~~~~~~ 395 (479)
..+...+..+++|+.++++.+.+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccChHHhccccCCCEEEccCCCcC
Confidence 777777888888988888877643
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=184.23 Aligned_cols=239 Identities=17% Similarity=0.132 Sum_probs=194.3
Q ss_pred eEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeec
Q 037759 140 VKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNL 218 (479)
Q Consensus 140 ~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L 218 (479)
.+.+... +.....+|..+.++++.|.+.+|. +..+.+..|.++++|++|+|++|.+..++ ..|.++++|++|++
T Consensus 45 ~~~v~c~-~~~l~~iP~~~~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICV-RKNLREVPDGISTNTRLLNLHENQ----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECC-SCCCSSCCSCCCTTCSEEECCSCC----CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeC-CCCcCcCCCCCCCCCcEEEccCCc----CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4456666 666777888888899999999998 66677788999999999999999998765 67999999999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC--C--CCCCCcccCeeecCC-C
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG--K--YCGSLENLDFISALH-P 292 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~--p--~i~~L~~L~~l~~~~-~ 292 (479)
++|.++.+|...|.++++|++|++++|.+..+|. .+.++++|++|+++ +|.... + .+.++++|+.+++.+ .
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~---~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG---ELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC---CCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC---CCCCcceeCcchhhcccccCeecCCCCc
Confidence 9999999998765999999999999999999885 58999999999999 876665 4 566899999999886 3
Q ss_pred CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEe-ecccccCcceEEEEecccCC
Q 037759 293 CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIIL-AKYQFPPSLTHLSFLNIELM 371 (479)
Q Consensus 293 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l-~~~~lp~~L~~L~l~~~~l~ 371 (479)
-..++. +..+++|+.|++++|. .....+..+..+++|+.|+++++.+- .+.- .+..+ ++|+.|++++|.++
T Consensus 197 l~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l-~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 197 LREIPN-LTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQSQIQ----VIERNAFDNL-QSLVEINLAHNNLT 268 (440)
T ss_dssp CSSCCC-CTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCC----EECTTSSTTC-TTCCEEECTTSCCC
T ss_pred Cccccc-cCCCcccCEEECCCCc--cCccChhhhccCccCCEEECCCCcee----EEChhhhcCC-CCCCEEECCCCCCC
Confidence 334556 7888999999999877 66666677888999999999873221 1110 33455 88999999999988
Q ss_pred CCCccccccCccCceEEeccCCC
Q 037759 372 DDPMPALEKLAVLRKLACSSDGF 394 (479)
Q Consensus 372 ~~~~~~l~~l~~L~~l~~~~~~~ 394 (479)
..+...+..+++|+.++++++.+
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccChhHhccccCCCEEEcCCCCc
Confidence 77777788889999888877664
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=3.7e-20 Score=179.03 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=192.1
Q ss_pred CCccEEEEecCCCCCCCcc--hhHHHhCcCCceeEEEecC-CcCc-cCchhhcccccCCeeecCCCCCc-cCChhHHhcC
Q 037759 160 SFLHSLLHLTLGSHYLDSN--YCEKIYKMFKFLRVLDLGS-LVLI-RYPSEIEYVFLLRYLNLNIPSLK-SLPSSLLNSL 234 (479)
Q Consensus 160 ~~Lr~L~l~~~~~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~l~-~lp~~l~~L~~L~~L~L~~~~l~-~lp~~i~~~l 234 (479)
.+++.|.+.++. +.. ..+..|.++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+ +++
T Consensus 50 ~~l~~L~L~~~~----l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN----LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQI 124 (313)
T ss_dssp CCEEEEEEECCC----CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGC
T ss_pred ceEEEEECCCCC----ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCC
Confidence 689999999998 443 4567899999999999995 8877 78999999999999999999998 788888 999
Q ss_pred cCCcEEecCCCccc-ccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCc-ccCeeecCCC---CCChhhhcCCCCCC
Q 037759 235 LNLYTLDMPFSYID-HTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLE-NLDFISALHP---CCCPEDILGRLPNL 306 (479)
Q Consensus 235 ~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~-~L~~l~~~~~---~~~~~~~l~~l~~L 306 (479)
++|++|++++|.+. .+|..+..+++|++|+++ +|.... | .++++. .|+.+++.+. ...+.. ++.++ |
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~---~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L 199 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFD---GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-L 199 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECC---SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-C
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECc---CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-c
Confidence 99999999999887 788999999999999999 998874 8 888887 8999998862 234455 77776 9
Q ss_pred CeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC---CCCccEEEeecccccCcceEEEEecccCCCCCccccccCcc
Q 037759 307 QNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK---IPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAV 383 (479)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~ 383 (479)
+.|+++++. .....+..+..+++|+.|++++..+ .|.+. .+ ++|++|++++|.++......++.+++
T Consensus 200 ~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 200 AFVDLSRNM--LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG-------LS-KNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp SEEECCSSE--EEECCGGGCCTTSCCSEEECCSSEECCBGGGCC-------CC-TTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred cEEECcCCc--ccCcCCHHHhcCCCCCEEECCCCceeeecCccc-------cc-CCCCEEECcCCcccCcCChHHhcCcC
Confidence 999999876 6656677788999999999987322 23322 33 89999999999987555556666665
Q ss_pred CceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCc
Q 037759 384 LRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIP 436 (479)
Q Consensus 384 L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp 436 (479)
|+.++++.+.+. ..+|. .+.+++|+.+++.+++.+...|
T Consensus 270 L~~L~Ls~N~l~-------------~~ip~-~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 270 LHSLNVSFNNLC-------------GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSEEE-------------EECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCccc-------------ccCCC-CccccccChHHhcCCCCccCCC
Confidence 555555443221 13333 3678999999999987776655
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=4.3e-19 Score=187.88 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=75.7
Q ss_pred CCCcccCCCCeEEEEEEcCCCCcccccc-c--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-
Q 037759 130 MDQEVKLWENVKRFTVHGNLNDFEFLDH-F--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS- 205 (479)
Q Consensus 130 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~- 205 (479)
....+...++++.|.+. ++.+..+++. + +++|++|.+.+|. +..+.+..|.++++|++|++++|.++.+|.
T Consensus 68 ~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N~----l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 68 GSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNP----IQSLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp CTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCC----CCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred CHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCCc----CCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 33444556667777776 5555555443 3 6777777777776 555556667777777777777777776653
Q ss_pred hhcccccCCeeecCCCCCcc--CChhHHhcCcCCcEEecCCCcccccc
Q 037759 206 EIEYVFLLRYLNLNIPSLKS--LPSSLLNSLLNLYTLDMPFSYIDHTA 251 (479)
Q Consensus 206 ~l~~L~~L~~L~L~~~~l~~--lp~~i~~~l~~L~~L~l~~~~l~~lp 251 (479)
.|+++++|++|++++|.+.. +|..+ +++++|++|++++|.+..++
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEEC
T ss_pred hhhcCcccCeeccccCccccCCCchhh-ccchhhhhhcccCccccccc
Confidence 46777777777777777653 34555 67777777777777665553
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=2.4e-19 Score=174.84 Aligned_cols=263 Identities=16% Similarity=0.145 Sum_probs=198.0
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccC
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLL 213 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L 213 (479)
.+.++.+.+. ++....++. .+ +++|+.|.+.+|. +..+.+..|..+++|++|++++|.++.+|..+. ++|
T Consensus 53 ~~~l~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNNK----ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSC----CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCeEEECC-CCcCCccCHhHhhCCCCCcEEECCCCc----cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 4578999999 666665644 55 9999999999998 566777889999999999999999999988776 799
Q ss_pred CeeecCCCCCccCChhHHhcCcCCcEEecCCCccc---ccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeee
Q 037759 214 RYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYID---HTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFIS 288 (479)
Q Consensus 214 ~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~---~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~ 288 (479)
++|++++|.+..+|...|+++++|++|++++|.+. ..|..+..+ +|++|+++ +|.... | .+. +.|+.++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~---~n~l~~l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS---EAKLTGIPKDLP--ETLNELH 199 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC---SSBCSSCCSSSC--SSCSCCB
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc---CCCCCccCcccc--CCCCEEE
Confidence 99999999999999876699999999999999775 345667777 99999999 988777 7 655 4566666
Q ss_pred cCC---CCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC--CCCccEEEeecccccCcceEE
Q 037759 289 ALH---PCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK--IPRRSNIILAKYQFPPSLTHL 363 (479)
Q Consensus 289 ~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--lp~L~~L~l~~~~lp~~L~~L 363 (479)
+.+ ....+.. +..+++|+.|+++++. .....+..+..+++|++|+++++.+ +|. ++..+ ++|++|
T Consensus 200 l~~n~i~~~~~~~-l~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~------~l~~l-~~L~~L 269 (332)
T 2ft3_A 200 LDHNKIQAIELED-LLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTLRELHLDNNKLSRVPA------GLPDL-KLLQVV 269 (332)
T ss_dssp CCSSCCCCCCTTS-STTCTTCSCCBCCSSC--CCCCCTTGGGGCTTCCEEECCSSCCCBCCT------TGGGC-TTCCEE
T ss_pred CCCCcCCccCHHH-hcCCCCCCEEECCCCc--CCcCChhHhhCCCCCCEEECCCCcCeecCh------hhhcC-ccCCEE
Confidence 654 2223345 8889999999999876 5555555788899999999987332 232 34455 999999
Q ss_pred EEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCe--e-EEcCCCCCCccEeEEecCC
Q 037759 364 SFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQE--W-TMGIRAMPKLECSILNPCA 430 (479)
Q Consensus 364 ~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~--~-~~~~~~~~~L~~L~l~~c~ 430 (479)
++++|.++..+...+..... ...++.|+.|.+.+++ +.. + +.....+++|+.+++.+|.
T Consensus 270 ~l~~N~l~~~~~~~~~~~~~-------~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 270 YLHTNNITKVGVNDFCPVGF-------GVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSCCCBCCTTSSSCSSC-------CSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ECCCCCCCccChhHcccccc-------ccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 99999988766655544321 1236778888888765 231 1 2234567888999888764
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.4e-18 Score=169.21 Aligned_cols=263 Identities=15% Similarity=0.102 Sum_probs=199.1
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccC
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLL 213 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L 213 (479)
.+.++.+.+. ++....++. .+ +++|++|.+.+|. +..+.+..|..+++|++|++++|.++.+|..+. ++|
T Consensus 51 ~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 51 PPDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNK----ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCeEEECC-CCcCCEeChhhhccCCCCCEEECCCCc----CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 4678899999 666666665 45 9999999999998 556667889999999999999999999987766 799
Q ss_pred CeeecCCCCCccCChhHHhcCcCCcEEecCCCccc---ccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeee
Q 037759 214 RYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYID---HTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFIS 288 (479)
Q Consensus 214 ~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~---~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~ 288 (479)
++|++++|.+..++...|+++++|++|++++|.+. ..+..+.++++|++|+++ +|.... | .+. +.|+.++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~---~n~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA---DTNITTIPQGLP--PSLTELH 198 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC---SSCCCSCCSSCC--TTCSEEE
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC---CCccccCCcccc--ccCCEEE
Confidence 99999999999999887799999999999999765 446779999999999999 988777 7 654 6777888
Q ss_pred cCCC---CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC--CCCccEEEeecccccCcceEE
Q 037759 289 ALHP---CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK--IPRRSNIILAKYQFPPSLTHL 363 (479)
Q Consensus 289 ~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--lp~L~~L~l~~~~lp~~L~~L 363 (479)
+.+. ...+.. +..+++|+.|+++++. .....+..+..+++|++|++++..+ +|. ++..+ ++|++|
T Consensus 199 l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~------~l~~l-~~L~~L 268 (330)
T 1xku_A 199 LDGNKITKVDAAS-LKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNNNKLVKVPG------GLADH-KYIQVV 268 (330)
T ss_dssp CTTSCCCEECTGG-GTTCTTCCEEECCSSC--CCEECTTTGGGSTTCCEEECCSSCCSSCCT------TTTTC-SSCCEE
T ss_pred CCCCcCCccCHHH-hcCCCCCCEEECCCCc--CceeChhhccCCCCCCEEECCCCcCccCCh------hhccC-CCcCEE
Confidence 7762 223455 8899999999999876 5555555788899999999988332 221 33455 899999
Q ss_pred EEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeE---EcCCCCCCccEeEEecC
Q 037759 364 SFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWT---MGIRAMPKLECSILNPC 429 (479)
Q Consensus 364 ~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c 429 (479)
++++|.++..+...+..... ...++.++.|.+.+.+ +..+. .....+++++.+++.++
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~-------~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGY-------NTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSC-------CTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ECCCCcCCccChhhcCCccc-------ccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 99999987766555543311 1235677777777654 22222 22345677888888764
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=2.9e-18 Score=174.21 Aligned_cols=276 Identities=21% Similarity=0.189 Sum_probs=208.7
Q ss_pred CeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeec
Q 037759 139 NVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNL 218 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L 218 (479)
.++++.+. ++....+|. ..++|+.|.+.+|.. ..++ ..+++|++|++++|.++.+|... ++|++|++
T Consensus 72 ~l~~L~l~-~~~l~~lp~-~~~~L~~L~l~~n~l----~~lp----~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELN-NLGLSSLPE-LPPHLESLVASCNSL----TELP----ELPQSLKSLLVDNNNLKALSDLP---PLLEYLGV 138 (454)
T ss_dssp TCSEEECT-TSCCSCCCS-CCTTCSEEECCSSCC----SSCC----CCCTTCCEEECCSSCCSCCCSCC---TTCCEEEC
T ss_pred CCCEEEec-CCccccCCC-CcCCCCEEEccCCcC----Cccc----cccCCCcEEECCCCccCcccCCC---CCCCEEEC
Confidence 45777877 665555554 368999999999884 3322 23589999999999998776432 68999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCCCCCChh
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALHPCCCPE 297 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~ 297 (479)
++|.++.+| ++ +++++|++|++++|.+..+|..+ .+|++|+++ +|.... |.+++++.|+.+++++. .+.
T Consensus 139 ~~n~l~~lp-~~-~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~---~n~l~~l~~~~~l~~L~~L~l~~N--~l~ 208 (454)
T 1jl5_A 139 SNNQLEKLP-EL-QNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG---NNQLEELPELQNLPFLTAIYADNN--SLK 208 (454)
T ss_dssp CSSCCSSCC-CC-TTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC---SSCCSSCCCCTTCTTCCEEECCSS--CCS
T ss_pred cCCCCCCCc-cc-CCCCCCCEEECCCCcCcccCCCc---ccccEEECc---CCcCCcCccccCCCCCCEEECCCC--cCC
Confidence 999999999 56 99999999999999999888643 589999999 887776 67788999999998862 222
Q ss_pred hhcC-CCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecC------CCCCCccEEEe------ecccccCcceEEE
Q 037759 298 DILG-RLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKE------SKIPRRSNIIL------AKYQFPPSLTHLS 364 (479)
Q Consensus 298 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~------~~lp~L~~L~l------~~~~lp~~L~~L~ 364 (479)
. +. ..++|+.|+++++. .. .++ .+..+++|++|+++++ ..+++|+.|++ .+...|++|+.|+
T Consensus 209 ~-l~~~~~~L~~L~l~~n~--l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ 283 (454)
T 1jl5_A 209 K-LPDLPLSLESIVAGNNI--LE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 283 (454)
T ss_dssp S-CCCCCTTCCEEECCSSC--CS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred c-CCCCcCcccEEECcCCc--CC-ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEE
Confidence 2 22 23589999999876 44 334 3788999999999882 23358888888 2223347899999
Q ss_pred EecccCCCCCccccccCccCceEEeccCCC-------CCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcc
Q 037759 365 FLNIELMDDPMPALEKLAVLRKLACSSDGF-------PKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPE 437 (479)
Q Consensus 365 l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~-------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 437 (479)
+++|.++..+ . -.++|+.++++.+.+ ++|+.|+++++ .+..++. .+++|+.|++++| .++.+|.
T Consensus 284 ls~N~l~~l~--~--~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~l~~lp~ 354 (454)
T 1jl5_A 284 VSENIFSGLS--E--LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPE 354 (454)
T ss_dssp CCSSCCSEES--C--CCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC
T ss_pred CcCCccCccc--C--cCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc---cCCcCCEEECCCC-ccccccc
Confidence 9999875421 1 125788888776543 47899999875 4565543 3789999999995 6888986
Q ss_pred cccCCCCCCEEEeeCCc
Q 037759 438 QLWCLKSLNKLELWWPE 454 (479)
Q Consensus 438 ~l~~l~~L~~L~l~~c~ 454 (479)
.+++|+.|++++|+
T Consensus 355 ---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNP 368 (454)
T ss_dssp ---CCTTCCEEECCSSC
T ss_pred ---hhhhccEEECCCCC
Confidence 57899999999886
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.3e-19 Score=174.64 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=121.5
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC---chhhcccccCCeeec
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY---PSEIEYVFLLRYLNL 218 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~l~~L~~L~~L~L 218 (479)
.+... +.....+|..+.++++.|.+.++. +..+....|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 11 ~l~c~-~~~l~~ip~~~~~~l~~L~L~~n~----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCN-SKGLTSVPTGIPSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECC-SSCCSSCCSCCCTTCCEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcC-CCCcccCCCCCCCCCCEEECCCCc----cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 44555 555666777667889999999887 4556666788999999999999988744 677778899999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccch--hhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCCC
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD--EFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHPC 293 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~~ 293 (479)
++|.+..+|..+ .++++|++|++++|.+..++. .+..+++|++|+++ +|.... + .+..++.|+.+++.+..
T Consensus 86 s~n~i~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 86 SFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS---HTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CSCSEEEEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT---TSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred CCCccccChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECC---CCcCCccchhhcccCcCCCEEECCCCc
Confidence 999999888887 889999999999998888874 68889999999999 776554 3 45566666666665421
Q ss_pred ----CChhhhcCCCCCCCeEEEEeCC
Q 037759 294 ----CCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 294 ----~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
..+.. +..+++|+.|+++++.
T Consensus 162 l~~~~~~~~-~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 162 FQENFLPDI-FTELRNLTFLDLSQCQ 186 (306)
T ss_dssp EGGGEECSC-CTTCTTCCEEECTTSC
T ss_pred cccccchhH-HhhCcCCCEEECCCCC
Confidence 12233 5556666666665544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=5.2e-19 Score=170.32 Aligned_cols=221 Identities=22% Similarity=0.185 Sum_probs=146.3
Q ss_pred CceeEEEecCCcCccCchh-hcccccCCeeecCCCCCccC---ChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEE
Q 037759 188 KFLRVLDLGSLVLIRYPSE-IEYVFLLRYLNLNIPSLKSL---PSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYL 263 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~L~~~~l~~l---p~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 263 (479)
++|++|++++|.++.+|.. +.++++|++|++++|.++.+ |..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 5788889988888888765 67888899999988888755 5666 77888999999888888888888888888888
Q ss_pred EeccCCCCCCCC-CCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCC-
Q 037759 264 NFGSITLSAHPG-KYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKES- 341 (479)
Q Consensus 264 ~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 341 (479)
+++ +|.... + .... +..+++|+.|+++++. .....+..+..+++|++|++++..
T Consensus 107 ~l~---~n~l~~~~------------------~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 107 DFQ---HSNLKQMS------------------EFSV-FLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECT---TSEEESST------------------TTTT-TTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECC---CCcccccc------------------cchh-hhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCcc
Confidence 888 665433 1 0112 4455555555555443 333333344555566666655411
Q ss_pred ---CCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEE-cCCC
Q 037759 342 ---KIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTM-GIRA 417 (479)
Q Consensus 342 ---~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~ 417 (479)
.+|. .+..+ ++|++|++++|.++......++.+++|+.++++.+.+ ..++. ....
T Consensus 163 ~~~~~~~------~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--------------~~~~~~~~~~ 221 (306)
T 2z66_A 163 QENFLPD------IFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--------------FSLDTFPYKC 221 (306)
T ss_dssp GGGEECS------CCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--------------SBCCSGGGTT
T ss_pred ccccchh------HHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc--------------CccChhhccC
Confidence 1121 23344 8888888888887655444555555555444444333 22221 2356
Q ss_pred CCCccEeEEecCCCCCCCcccccCCC-CCCEEEeeCCc
Q 037759 418 MPKLECSILNPCAHLKMIPEQLWCLK-SLNKLELWWPE 454 (479)
Q Consensus 418 ~~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 454 (479)
+++|+.|++++|.-....|..+..++ +|+.|++++++
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 88999999999754444566777774 89999998865
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.6e-18 Score=180.73 Aligned_cols=306 Identities=13% Similarity=0.051 Sum_probs=204.2
Q ss_pred CCCeEEEEEEcCCCC-ccccccc---CCC-ccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc-----Cchh
Q 037759 137 WENVKRFTVHGNLND-FEFLDHF---DSF-LHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR-----YPSE 206 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~-~~~~~~~---~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~ 206 (479)
.+.++.|.+. .+.. ...+..+ ++. |+.|.+.+|... ...........+++|++|++++|.+.. ++..
T Consensus 111 ~~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 111 LRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp CTTCCEEEEE-SCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCCCeEEee-ccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 4678888888 4433 2223333 334 999999888631 222344556688999999999998652 3344
Q ss_pred hcccccCCeeecCCCCCc-----cCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCC-------
Q 037759 207 IEYVFLLRYLNLNIPSLK-----SLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHP------- 274 (479)
Q Consensus 207 l~~L~~L~~L~L~~~~l~-----~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~------- 274 (479)
..++++|++|++++|.+. .++..+ .++++|++|++++|.+..+|..+..+++|++|+++ .+...
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~---~~~~~~~~~~~~ 263 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG---SLNEDIGMPEKY 263 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC---BCCCCTTCTTSS
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc---ccccccchHHHH
Confidence 567889999999998876 344434 78899999999999888888888888899988887 43222
Q ss_pred --------------------C-C-CCCCCcccCeeecCCCCCC---hhhhcCCCCCCCeEEEEeCCccchHHHHHHhccC
Q 037759 275 --------------------G-K-YCGSLENLDFISALHPCCC---PEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRL 329 (479)
Q Consensus 275 --------------------~-p-~i~~L~~L~~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 329 (479)
. | .+..+++|+.+++.+.... +...+..+++|+.|++.++- ....+......+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~ 341 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYC 341 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHC
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhC
Confidence 0 1 1224556666666652211 11114778888888888443 445555556778
Q ss_pred CCccEEEee-----------cCCC-----------CCCccEEEe-----------eccc-ccCcceEEEEec----ccCC
Q 037759 330 SCLESLKLA-----------KESK-----------IPRRSNIIL-----------AKYQ-FPPSLTHLSFLN----IELM 371 (479)
Q Consensus 330 ~~L~~L~l~-----------~~~~-----------lp~L~~L~l-----------~~~~-lp~~L~~L~l~~----~~l~ 371 (479)
++|++|++. ...+ .|+|+.|.+ .+.. + ++|+.|++.+ +.++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERIT 420 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCcccc
Confidence 889999988 2111 268888887 2222 5 7889999973 3444
Q ss_pred CCCcc-----ccccCccCceEEecc--------------CCCCCcceEeeccCCCCCee--EEcCCCCCCccEeEEecCC
Q 037759 372 DDPMP-----ALEKLAVLRKLACSS--------------DGFPKLKVLHLKSMLWLQEW--TMGIRAMPKLECSILNPCA 430 (479)
Q Consensus 372 ~~~~~-----~l~~l~~L~~l~~~~--------------~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~ 430 (479)
..+.. .+..+++|+.|+++. ..+++|+.|.+.++. +... +.....+++|++|++++|+
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 33211 245688888888842 126789999988764 4332 2223567999999999987
Q ss_pred CCCC--CcccccCCCCCCEEEeeCCc
Q 037759 431 HLKM--IPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 431 ~l~~--lp~~l~~l~~L~~L~l~~c~ 454 (479)
++. ++.....+++|+.|++++|+
T Consensus 500 -l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 500 -FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred -CcHHHHHHHHHhcCccCeeECcCCc
Confidence 543 44455678999999999998
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.8e-17 Score=173.83 Aligned_cols=253 Identities=17% Similarity=0.048 Sum_probs=179.7
Q ss_pred CeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeec
Q 037759 139 NVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNL 218 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L 218 (479)
.++.+.+. ++....+|..+.++|+.|.+.+|.. ..++. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls-~n~L~~lp~~l~~~L~~L~L~~N~l----~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNL----TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECC-SSCCSCCCSCCCTTCSEEEECSCCC----SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEec-CCCcCccChhhCCCCcEEEecCCCC----CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 46778888 7777778887788999999999984 33332 67899999999999999887 6789999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCCCCCCh
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALHPCCCP 296 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~~~~~ 296 (479)
++|.++.+|. .+++|++|++++|.+..+|.. +++|++|+++ +|.... | .+. .|+.+++.+ ..+
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls---~N~l~~l~~~~~---~L~~L~L~~--N~l 173 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS---DNQLASLPALPS---ELCKLWAYN--NQL 173 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC---SSCCSCCCCCCT---TCCEEECCS--SCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc---CCcCCCcCCccC---CCCEEECCC--CCC
Confidence 9999999985 578899999999999999874 4889999999 887665 5 443 344444443 111
Q ss_pred hhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCcc
Q 037759 297 EDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMP 376 (479)
Q Consensus 297 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~ 376 (479)
...-..+++|+.|++++|. ... ++ ..+++|+.|.++++.+- .+...+++|+.|++++|.++..+
T Consensus 174 ~~l~~~~~~L~~L~Ls~N~--l~~-l~---~~~~~L~~L~L~~N~l~--------~l~~~~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 174 TSLPMLPSGLQELSVSDNQ--LAS-LP---TLPSELYKLWAYNNRLT--------SLPALPSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp SCCCCCCTTCCEEECCSSC--CSC-CC---CCCTTCCEEECCSSCCS--------SCCCCCTTCCEEECCSSCCSCCC--
T ss_pred CCCcccCCCCcEEECCCCC--CCC-CC---CccchhhEEECcCCccc--------ccCCCCCCCCEEEccCCccCcCC--
Confidence 1101235677777777654 221 11 12356666666552111 11111267788888877764322
Q ss_pred ccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 377 ALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 377 ~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
..+++|+.|+++++ .+..++. .+++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 238 ---------------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 ---------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ---------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ---------------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 12456777777764 4555544 5789999999996 788999999999999999999997
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=1.7e-18 Score=176.37 Aligned_cols=306 Identities=16% Similarity=0.069 Sum_probs=201.7
Q ss_pred CCeEEEEEEcCCCCcc-cccc-c--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc-Cchhhc-ccc
Q 037759 138 ENVKRFTVHGNLNDFE-FLDH-F--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR-YPSEIE-YVF 211 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~-~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~l~-~L~ 211 (479)
+.++++.+. ++.... .... + +++|++|.+.+|..........+..+..+++|++|++++|.+.. .+..+. .+.
T Consensus 3 ~~l~~L~Ls-~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhh-hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 467888888 544432 2233 3 88999999999884210011345678888999999999998873 233333 344
Q ss_pred ----cCCeeecCCCCCc-----cCChhHHhcCcCCcEEecCCCcccccc-hhh-----hcCccCcEEEeccCCCCCCCC-
Q 037759 212 ----LLRYLNLNIPSLK-----SLPSSLLNSLLNLYTLDMPFSYIDHTA-DEF-----WKMSKLRYLNFGSITLSAHPG- 275 (479)
Q Consensus 212 ----~L~~L~L~~~~l~-----~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~-----~~L~~L~~L~l~~~~~~~~~~- 275 (479)
+|++|++++|.+. .+|..+ .++++|++|++++|.+.... ..+ ...++|++|+++ +|....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~---~n~l~~~ 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE---YCSLSAA 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT---TSCCBGG
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC---CCCCCHH
Confidence 6999999999887 456666 89999999999999765432 222 235679999999 886554
Q ss_pred C--CC----CCCcccCeeecCCCCCC---hhhhcC-----CCCCCCeEEEEeCCccchH----HHHHHhccCCCccEEEe
Q 037759 276 K--YC----GSLENLDFISALHPCCC---PEDILG-----RLPNLQNIQIWGDLIYYQS----LLSKILYRLSCLESLKL 337 (479)
Q Consensus 276 p--~i----~~L~~L~~l~~~~~~~~---~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l 337 (479)
. .+ ..++.|+.+++.+.... +.. +. ..++|+.|+++++. ... .++..+..+++|++|++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRV-LCQGLKDSPCQLEALKLESCG--VTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH-HHHHHHHSCCCCCEEECTTSC--CBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHH-HHHHHhcCCCCceEEEccCCC--CcHHHHHHHHHHHHhCCCccEEec
Confidence 1 22 25678888888763211 111 21 35689999998765 333 46777888899999999
Q ss_pred ecCC---------------CCCCccEEEe---------------ecccccCcceEEEEecccCCCCCcccccc-----Cc
Q 037759 338 AKES---------------KIPRRSNIIL---------------AKYQFPPSLTHLSFLNIELMDDPMPALEK-----LA 382 (479)
Q Consensus 338 ~~~~---------------~lp~L~~L~l---------------~~~~lp~~L~~L~l~~~~l~~~~~~~l~~-----l~ 382 (479)
++.. ..++|+.|++ .+..+ ++|++|++++|.+.......+.. .+
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 8721 1357777777 11235 67778888777664433333332 25
Q ss_pred cCceEEeccCCC---------------CCcceEeeccCCCCCeeEEc------CCCCCCccEeEEecCCCCC-----CCc
Q 037759 383 VLRKLACSSDGF---------------PKLKVLHLKSMLWLQEWTMG------IRAMPKLECSILNPCAHLK-----MIP 436 (479)
Q Consensus 383 ~L~~l~~~~~~~---------------~~L~~L~l~~~~~l~~~~~~------~~~~~~L~~L~l~~c~~l~-----~lp 436 (479)
+|+.++++.+.+ ++|+.|+++++ .+.+.... ....++|+.|++.+| .++ .+|
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH
Confidence 777777765432 57777777765 23322110 012578999999997 465 577
Q ss_pred ccccCCCCCCEEEeeCCc
Q 037759 437 EQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 437 ~~l~~l~~L~~L~l~~c~ 454 (479)
..+..+++|+.|++++|+
T Consensus 392 ~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCCCCCEEECCSSS
T ss_pred HHHHhCCCccEEECCCCC
Confidence 788888999999999987
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3.9e-18 Score=162.47 Aligned_cols=215 Identities=20% Similarity=0.165 Sum_probs=142.9
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeecC
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLN 219 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~ 219 (479)
+.+... +.....+|..+.++++.|.+.++. +..+.+..|..+++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 14 ~~~~c~-~~~l~~ip~~~~~~l~~L~l~~n~----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCP-QQGLQAVPVGIPAASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECC-SSCCSSCCTTCCTTCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcC-cCCcccCCcCCCCCceEEEeeCCc----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 445555 555666777668889999998888 5566667788999999999999988866 6788889999999999
Q ss_pred CCC-CccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecCCCCC
Q 037759 220 IPS-LKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISALHPCC 294 (479)
Q Consensus 220 ~~~-l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~~~~~ 294 (479)
+|. +..+++..|.++++|++|++++|.+..++ ..+.++++|++|+++ +|.... + .++.++.|+.+++.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~l~~--- 162 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ---DNALQALPDDTFRDLGNLTHLFLHG--- 162 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECCS---
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC---CCcccccCHhHhccCCCccEEECCC---
Confidence 987 88885444488999999999999888774 558889999999999 776554 3 244445555554443
Q ss_pred ChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC---CCccEEEeecccccCcceEEEEecccCC
Q 037759 295 CPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI---PRRSNIILAKYQFPPSLTHLSFLNIELM 371 (479)
Q Consensus 295 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l---p~L~~L~l~~~~lp~~L~~L~l~~~~l~ 371 (479)
+. ........+..+++|++|++++..+- |. ++..+ ++|+.|++++|.++
T Consensus 163 -------------------n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l-~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 163 -------------------NR--ISSVPERAFRGLHSLDRLLLHQNRVAHVHPH------AFRDL-GRLMTLYLFANNLS 214 (285)
T ss_dssp -------------------SC--CCEECTTTTTTCTTCCEEECCSSCCCEECTT------TTTTC-TTCCEEECCSSCCS
T ss_pred -------------------Cc--ccccCHHHhcCccccCEEECCCCcccccCHh------HccCc-ccccEeeCCCCcCC
Confidence 32 22111122333444444444431110 10 22334 67777777777776
Q ss_pred CCCccccccCccCceEEeccCCC
Q 037759 372 DDPMPALEKLAVLRKLACSSDGF 394 (479)
Q Consensus 372 ~~~~~~l~~l~~L~~l~~~~~~~ 394 (479)
......+..+++|+.++++.+.+
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCCHHHcccCcccCEEeccCCCc
Confidence 55554566666666666655543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=165.22 Aligned_cols=171 Identities=19% Similarity=0.132 Sum_probs=142.6
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hccccc
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~ 212 (479)
.+.++++.+. ++....++. .+ +++|+.|.+.+|. +..+.+..|.++++|++|++++|.++.+|.. +.++++
T Consensus 51 ~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 51 TEAVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred cccCcEEECC-CCcCcccCHHHhccCCCCCEEECCCCc----cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 3579999999 666666666 45 9999999999997 5667677899999999999999999988866 899999
Q ss_pred CCeeecCCCCCccCCh-hHHhcCcCCcEEecCCC-cccccc-hhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCe
Q 037759 213 LRYLNLNIPSLKSLPS-SLLNSLLNLYTLDMPFS-YIDHTA-DEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDF 286 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~-~i~~~l~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~ 286 (479)
|++|++++|.++.+|. ..|+++++|++|++++| .+..++ ..++++++|++|+++ +|.... | .+.++++|+.
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID---ASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE---ETTCCEECTTTTTTCSEEEE
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC---CCCcCccCHHHHhccccCCe
Confidence 9999999999999998 44499999999999999 688875 568999999999999 988777 6 8889999999
Q ss_pred eecCCCC--CChhhhcCCCCCCCeEEEEeCC
Q 037759 287 ISALHPC--CCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 287 l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+++.+.. ......+..+++|+.|+++++.
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 9887622 1222213458999999999765
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2.8e-18 Score=166.14 Aligned_cols=223 Identities=19% Similarity=0.107 Sum_probs=148.6
Q ss_pred CcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhh
Q 037759 176 DSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEF 254 (479)
Q Consensus 176 ~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~ 254 (479)
........+..+++|++|++++|.++.++ ..+.++++|++|++++|.+..+++ + +.+++|++|++++|.+..+|.
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~-- 97 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV-- 97 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE--
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC--
Confidence 44456677788889999999999988664 678899999999999999887765 5 889999999999998887763
Q ss_pred hcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCcc
Q 037759 255 WKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLE 333 (479)
Q Consensus 255 ~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 333 (479)
.++|++|+++ +|.... + ...+++|+.|+++++. .....+..+..+++|+
T Consensus 98 --~~~L~~L~l~---~n~l~~~~-----------------------~~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 98 --GPSIETLHAA---NNNISRVS-----------------------CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp --CTTCCEEECC---SSCCSEEE-----------------------ECCCSSCEEEECCSSC--CCSGGGBCTGGGSSEE
T ss_pred --CCCcCEEECC---CCccCCcC-----------------------ccccCCCCEEECCCCC--CCCccchhhhccCCCC
Confidence 4788999988 765433 2 1123445555555443 3322223344445555
Q ss_pred EEEeecCCCCCCccEEEe-ec-ccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCee
Q 037759 334 SLKLAKESKIPRRSNIIL-AK-YQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEW 411 (479)
Q Consensus 334 ~L~l~~~~~lp~L~~L~l-~~-~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~ 411 (479)
+|+++++.+ ..+.. .+ ..+ ++|++|++++|.++.. +.. ..+++|+.|+++++ .+..+
T Consensus 148 ~L~Ls~N~l----~~~~~~~~~~~l-~~L~~L~L~~N~l~~~--~~~-------------~~l~~L~~L~Ls~N-~l~~l 206 (317)
T 3o53_A 148 YLDLKLNEI----DTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQ-------------VVFAKLKTLDLSSN-KLAFM 206 (317)
T ss_dssp EEECTTSCC----CEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECC-------------CCCTTCCEEECCSS-CCCEE
T ss_pred EEECCCCCC----CcccHHHHhhcc-CcCCEEECCCCcCccc--ccc-------------cccccCCEEECCCC-cCCcc
Confidence 555544211 11100 11 234 6777777777775422 111 12566777777664 45666
Q ss_pred EEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 412 TMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 412 ~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
+.....+++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 207 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 555667888999999885 677888888888899999998876
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=168.21 Aligned_cols=218 Identities=18% Similarity=0.152 Sum_probs=146.3
Q ss_pred CceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEe
Q 037759 188 KFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNF 265 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l 265 (479)
+++++|+|++|.++.++ ..+.++++|++|++++|.+..++...|.++++|++|++++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67899999999988664 678899999999999999988886666899999999999998888886 4888999999999
Q ss_pred ccCCCCCCCC-C--CCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC
Q 037759 266 GSITLSAHPG-K--YCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK 342 (479)
Q Consensus 266 ~~~~~~~~~~-p--~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 342 (479)
+ +|.... | .+.++++|+.+++.+ +.. ........+..+++|++|+++++.+
T Consensus 144 ~---~N~i~~~~~~~~~~l~~L~~L~l~~----------------------~~~-l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 144 R---NNPIESIPSYAFNRIPSLRRLDLGE----------------------LKR-LSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp C---SCCCCEECTTTTTTCTTCCEEECCC----------------------CTT-CCEECTTTTTTCSSCCEEECTTSCC
T ss_pred C---CCcccccCHHHhhhCcccCEeCCCC----------------------CCC-cceeCcchhhcccccCeecCCCCcC
Confidence 9 776555 3 344555555555443 110 1111111233444444444443111
Q ss_pred --CCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEE-cCCCCC
Q 037759 343 --IPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTM-GIRAMP 419 (479)
Q Consensus 343 --lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~ 419 (479)
+|.+. .+ ++|+.|++++|.++......+..+++| +.|.+.++ .+..++. ....++
T Consensus 198 ~~~~~~~-------~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~L~~n-~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 198 REIPNLT-------PL-IKLDELDLSGNHLSAIRPGSFQGLMHL-------------QKLWMIQS-QIQVIERNAFDNLQ 255 (440)
T ss_dssp SSCCCCT-------TC-SSCCEEECTTSCCCEECTTTTTTCTTC-------------CEEECTTC-CCCEECTTSSTTCT
T ss_pred ccccccC-------CC-cccCEEECCCCccCccChhhhccCccC-------------CEEECCCC-ceeEEChhhhcCCC
Confidence 12222 33 788888888888765555555555554 44444443 2333321 235678
Q ss_pred CccEeEEecCCCCCCCcc-cccCCCCCCEEEeeCCc
Q 037759 420 KLECSILNPCAHLKMIPE-QLWCLKSLNKLELWWPE 454 (479)
Q Consensus 420 ~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 454 (479)
+|+.|++++| +++.+|. .+..+++|+.|+++++|
T Consensus 256 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 9999999995 7888774 56789999999998765
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.6e-17 Score=167.34 Aligned_cols=217 Identities=18% Similarity=0.117 Sum_probs=146.9
Q ss_pred CceeEEEecCCcCccC-chhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEe
Q 037759 188 KFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNF 265 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 265 (479)
+++++|+|++|.++.+ |..|.++++|++|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6789999999998866 57788999999999999999888765558999999999999988888865 788999999999
Q ss_pred ccCCCCCCCC-C--CCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHH-HHHHhccCCCccEEEeecCC
Q 037759 266 GSITLSAHPG-K--YCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSL-LSKILYRLSCLESLKLAKES 341 (479)
Q Consensus 266 ~~~~~~~~~~-p--~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 341 (479)
+ +|.... | .+.+++.|+.+++.+ +. .... ....+..+++|++|+++++.
T Consensus 155 ~---~N~l~~~~~~~~~~l~~L~~L~l~~----------------------~~--~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 155 R---NNPIESIPSYAFNRVPSLMRLDLGE----------------------LK--KLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp C---SCCCCEECTTTTTTCTTCCEEECCC----------------------CT--TCCEECTTTTTTCTTCCEEECTTSC
T ss_pred C---CCCcceeCHhHHhcCCcccEEeCCC----------------------CC--CccccChhhccCCCCCCEEECCCCc
Confidence 9 776555 3 334555555555443 21 1111 11123344445555544411
Q ss_pred C--CCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeE-EcCCCC
Q 037759 342 K--IPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWT-MGIRAM 418 (479)
Q Consensus 342 ~--lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~ 418 (479)
+ +|.+. .+ ++|+.|++++|.+.......+..+++| +.|.+.++ .+..+. .....+
T Consensus 208 l~~~~~~~-------~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~L~~n-~l~~~~~~~~~~l 265 (452)
T 3zyi_A 208 IKDMPNLT-------PL-VGLEELEMSGNHFPEIRPGSFHGLSSL-------------KKLWVMNS-QVSLIERNAFDGL 265 (452)
T ss_dssp CSSCCCCT-------TC-TTCCEEECTTSCCSEECGGGGTTCTTC-------------CEEECTTS-CCCEECTTTTTTC
T ss_pred cccccccc-------cc-ccccEEECcCCcCcccCcccccCccCC-------------CEEEeCCC-cCceECHHHhcCC
Confidence 1 12222 33 788888888888766555555555554 44554443 233332 224568
Q ss_pred CCccEeEEecCCCCCCCcc-cccCCCCCCEEEeeCCc
Q 037759 419 PKLECSILNPCAHLKMIPE-QLWCLKSLNKLELWWPE 454 (479)
Q Consensus 419 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 454 (479)
++|+.|++++| +++.+|. .+..+++|+.|+++++|
T Consensus 266 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 99999999995 7888774 56789999999998765
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=7.3e-17 Score=153.62 Aligned_cols=193 Identities=19% Similarity=0.169 Sum_probs=150.6
Q ss_pred CCCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-CccC-chhhccc
Q 037759 136 LWENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIRY-PSEIEYV 210 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~~l~~L 210 (479)
....++++.+. ++....++. .+ +++|+.|.+.++. +..+.+..|..+++|++|++++|. +..+ |..+..+
T Consensus 30 ~~~~l~~L~l~-~n~i~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 30 IPAASQRIFLH-GNRISHVPAASFRACRNLTILWLHSNV----LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp CCTTCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCCCceEEEee-CCcCCccCHHHcccCCCCCEEECCCCc----cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 35689999999 666666664 45 8999999999997 566667889999999999999997 8877 6789999
Q ss_pred ccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCe
Q 037759 211 FLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDF 286 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~ 286 (479)
++|++|++++|.+..+++..|+++++|++|++++|.+..+|.. ++.+++|++|+++ +|.... | .+..++.|+.
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH---GNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCCEECTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC---CCcccccCHHHhcCccccCE
Confidence 9999999999999988665559999999999999999999865 8999999999999 887666 5 4667777887
Q ss_pred eecCCCC---CChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeec
Q 037759 287 ISALHPC---CCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAK 339 (479)
Q Consensus 287 l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 339 (479)
+++.+.. ..+.. ++.+++|+.|+++++. .....+..+..+++|+.|++++
T Consensus 182 L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHA-FRDLGRLMTLYLFANN--LSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp EECCSSCCCEECTTT-TTTCTTCCEEECCSSC--CSCCCHHHHTTCTTCCEEECCS
T ss_pred EECCCCcccccCHhH-ccCcccccEeeCCCCc--CCcCCHHHcccCcccCEEeccC
Confidence 7777521 22344 6777778888877665 4444444555555555555543
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=5.3e-17 Score=153.39 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=113.2
Q ss_pred CCeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hcccccCCee
Q 037759 138 ENVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFLLRYL 216 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L 216 (479)
...+.+.+. +.....+|..+.++++.|.+.++. +..+.+..|..+++|++|++++|.++.+|.. +.++++|++|
T Consensus 16 ~~~~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCS-SKKLTAIPSNIPADTKKLDLQSNK----LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECT-TSCCSSCCSCCCTTCSEEECCSSC----CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEcc-CCCCCccCCCCCCCCCEEECcCCC----CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 345667776 666666777777889999998887 4556666788899999999999998888755 5788999999
Q ss_pred ecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecCC
Q 037759 217 NLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISALH 291 (479)
Q Consensus 217 ~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~~ 291 (479)
++++|.+..+|...|.++++|++|++++|.+..+|.. +..+++|++|+++ +|.... | .+..++.|+.+++.+
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG---YNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC---CCcCCccCHhHccCCcccceeEecC
Confidence 9999999988877768899999999999988888754 7889999999999 776555 4 244555555555543
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=1.1e-17 Score=161.65 Aligned_cols=79 Identities=23% Similarity=0.168 Sum_probs=48.8
Q ss_pred CcceEEEEecccCCCCC-ccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCc
Q 037759 358 PSLTHLSFLNIELMDDP-MPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIP 436 (479)
Q Consensus 358 ~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp 436 (479)
++|++|++++|.+.... .+.+..+ ++|+.|+++++ .++.++... +++|+.|++++ ++++.+|
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l-------------~~L~~L~Ls~N-~l~~ip~~~--~~~L~~L~Ls~-N~l~~~p 290 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWP-------------SQLNSLNLSFT-GLKQVPKGL--PAKLSVLDLSY-NRLDRNP 290 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCC-------------TTCCEEECTTS-CCSSCCSSC--CSEEEEEECCS-SCCCSCC
T ss_pred CCCCEEECCCCcCCcccchhhhhhc-------------CCCCEEECCCC-ccChhhhhc--cCCceEEECCC-CCCCCCh
Confidence 55666666666655433 2222233 34555555443 233333222 27888999988 4688887
Q ss_pred ccccCCCCCCEEEeeCCc
Q 037759 437 EQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 437 ~~l~~l~~L~~L~l~~c~ 454 (479)
. +..+++|+.|++++++
T Consensus 291 ~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp C-TTTSCEEEEEECTTCT
T ss_pred h-HhhCCCCCEEeccCCC
Confidence 6 7888899999998876
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=7.5e-17 Score=152.79 Aligned_cols=211 Identities=18% Similarity=0.153 Sum_probs=123.1
Q ss_pred CcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChh
Q 037759 151 DFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSS 229 (479)
Q Consensus 151 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~ 229 (479)
...+|..+.++++.|.+.++. +..+.+..|.++++|++|++++|.++.++ ..+.++++|++|++++|.++.++..
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccCCCCCCCccEEECCCCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 344565556677777777776 44455556777777777777777777554 3577777777777777777776654
Q ss_pred HHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCe
Q 037759 230 LLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQN 308 (479)
Q Consensus 230 i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~ 308 (479)
.|+++++|++|++++|.+..++. .++.+++|++|+++ +|.... ...+.. ++.+++|+.
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~-----------------~~l~~~-~~~l~~L~~ 153 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQS-----------------FKLPEY-FSNLTNLEH 153 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC---SSCCCC-----------------CCCCGG-GGGCTTCCE
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECc---CCccce-----------------ecCchh-hccCCCCCE
Confidence 44777777777777777776654 47777777777777 543221 012334 666777777
Q ss_pred EEEEeCCccchHHHHHHhc---cCCCcc-EEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccC
Q 037759 309 IQIWGDLIYYQSLLSKILY---RLSCLE-SLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVL 384 (479)
Q Consensus 309 L~l~~~~~~~~~~~~~~l~---~l~~L~-~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L 384 (479)
|+++++. .....+..+. .++.|. +|+++++.+- .+.-..... .+|+.|++++|.++..+...++.+++|
T Consensus 154 L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~----~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 154 LDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN----FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp EECCSSC--CCEECGGGGHHHHTCTTCCEEEECCSSCCC----EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred EECCCCC--CCcCCHHHhhhhhhccccceeeecCCCccc----ccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence 7777654 3222222222 233332 5555442111 000001112 467777777777655544445555555
Q ss_pred ceEEeccCC
Q 037759 385 RKLACSSDG 393 (479)
Q Consensus 385 ~~l~~~~~~ 393 (479)
+.++++.+.
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 555555444
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=4.8e-17 Score=166.74 Aligned_cols=212 Identities=20% Similarity=0.116 Sum_probs=139.6
Q ss_pred CCceeEEEecCCcCccC-chhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEe
Q 037759 187 FKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNF 265 (479)
Q Consensus 187 l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 265 (479)
+++|++|+|++|.++.+ |..++.+++|++|++++|.+...++ + +.+++|++|++++|.+..+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 34888888888888866 4678888888888888888886665 5 888888889988888877764 378888888
Q ss_pred ccCCCCCCCC-CCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCC
Q 037759 266 GSITLSAHPG-KYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIP 344 (479)
Q Consensus 266 ~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp 344 (479)
+ +|.... + ...+++|+.|++++|. .....+..+..+++|+.|+++++.+-
T Consensus 107 ~---~N~l~~~~-----------------------~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~- 157 (487)
T 3oja_A 107 A---NNNISRVS-----------------------CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNEID- 157 (487)
T ss_dssp C---SSCCCCEE-----------------------ECCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTSCCC-
T ss_pred c---CCcCCCCC-----------------------ccccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCCCCC-
Confidence 8 765443 2 1123445555555444 33333334444555555555442111
Q ss_pred CccEEEe-ecc-cccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCcc
Q 037759 345 RRSNIIL-AKY-QFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLE 422 (479)
Q Consensus 345 ~L~~L~l-~~~-~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 422 (479)
.... .+. .+ ++|+.|++++|.++.. +... .+++|+.|+++++ .+..++...+.+++|+
T Consensus 158 ---~~~~~~l~~~l-~~L~~L~Ls~N~l~~~--~~~~-------------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 158 ---TVNFAELAASS-DTLEHLNLQYNFIYDV--KGQV-------------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVT 217 (487)
T ss_dssp ---EEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCC-------------CCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred ---CcChHHHhhhC-CcccEEecCCCccccc--cccc-------------cCCCCCEEECCCC-CCCCCCHhHcCCCCcc
Confidence 1000 111 34 7777777777775432 1111 2566777777664 4566655566788999
Q ss_pred EeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 423 CSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 423 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 218 ~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 218 WISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred EEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 9999984 688888888888999999998876
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=3.7e-18 Score=165.30 Aligned_cols=233 Identities=14% Similarity=0.040 Sum_probs=153.4
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.+|. +....+..|..+++|++|++++|.++..+. +..+++|++|++++|.++.+| ..++|+
T Consensus 33 ~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp GGGCSEEECTTSC----CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred CCCCCEEECcCCc----cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 6789999999998 566778899999999999999999986664 889999999999999988775 458999
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCCCC---Chhhhc-CCCCCCCeEEE
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHPCC---CPEDIL-GRLPNLQNIQI 311 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~~~---~~~~~l-~~l~~L~~L~l 311 (479)
+|++++|.+..++.. .+++|++|+++ +|.... + .++.++.|+.+++++... .+.. + ..+++|+.|++
T Consensus 103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~---~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L 176 (317)
T 3o53_A 103 TLHAANNNISRVSCS--RGQGKKNIYLA---NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNL 176 (317)
T ss_dssp EEECCSSCCSEEEEC--CCSSCEEEECC---SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEEC
T ss_pred EEECCCCccCCcCcc--ccCCCCEEECC---CCCCCCccchhhhccCCCCEEECCCCCCCcccHHH-HhhccCcCCEEEC
Confidence 999999998888743 47889999999 877655 3 444555555555554111 1112 2 23445555555
Q ss_pred EeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEecc
Q 037759 312 WGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS 391 (479)
Q Consensus 312 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~ 391 (479)
++|. ... + |. ...+ ++|++|++++|.++..+. .+..+
T Consensus 177 ~~N~--l~~--------------~--------~~-------~~~l-~~L~~L~Ls~N~l~~l~~-~~~~l---------- 213 (317)
T 3o53_A 177 QYNF--IYD--------------V--------KG-------QVVF-AKLKTLDLSSNKLAFMGP-EFQSA---------- 213 (317)
T ss_dssp TTSC--CCE--------------E--------EC-------CCCC-TTCCEEECCSSCCCEECG-GGGGG----------
T ss_pred CCCc--Ccc--------------c--------cc-------cccc-ccCCEEECCCCcCCcchh-hhccc----------
Confidence 4332 100 0 01 1123 778888888887653322 23333
Q ss_pred CCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCC-CCCcccccCCCCCCEEEeeCCc
Q 037759 392 DGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHL-KMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 392 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
++|+.|+++++ .+..++.....+++|+.|++.+|+-. ..+|..+..+++|+.+++.+|+
T Consensus 214 ---~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 214 ---AGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp ---TTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---CcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 44455555443 34444444456777888888775433 2456666667777777666544
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=1.3e-16 Score=167.63 Aligned_cols=308 Identities=14% Similarity=0.107 Sum_probs=207.0
Q ss_pred CCCeEEEEEEcCCCCccccccc---CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc-----Cchhhc
Q 037759 137 WENVKRFTVHGNLNDFEFLDHF---DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR-----YPSEIE 208 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~ 208 (479)
.+.++++.+.++......+..+ +++|++|.+.+|... .....+..+..+++|++|++++|.++. ++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4578899998433333333333 799999999998531 222355666789999999999998663 223334
Q ss_pred ccccCCeeecCCCC--Cc--cCChhHHhcCcCCcEEecCCC-cccccchhhhcCccCcEEEeccCCCCCC----------
Q 037759 209 YVFLLRYLNLNIPS--LK--SLPSSLLNSLLNLYTLDMPFS-YIDHTADEFWKMSKLRYLNFGSITLSAH---------- 273 (479)
Q Consensus 209 ~L~~L~~L~L~~~~--l~--~lp~~i~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~---------- 273 (479)
.+++|++|++++|. +. .++.-+ .++++|++|++++| .+..+|..+.++++|++|+++ .|..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG---GYTAEVRPDVYSGL 257 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS---BCCCCCCHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc---cccCccchhhHHHH
Confidence 67799999999986 22 222223 67899999999999 777788888899999999876 4421
Q ss_pred ---------CC---------C-CCC----CCcccCeeecCCCCCC---hhhhcCCCCCCCeEEEEeCCccchHHHHHHhc
Q 037759 274 ---------PG---------K-YCG----SLENLDFISALHPCCC---PEDILGRLPNLQNIQIWGDLIYYQSLLSKILY 327 (479)
Q Consensus 274 ---------~~---------p-~i~----~L~~L~~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 327 (479)
.+ + .+. .+++|+.+++...... +...+..+++|+.|++.++- ....+.....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~ 335 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLAS 335 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHH
Confidence 00 1 111 4567777777653221 12225688999999999764 5555555556
Q ss_pred cCCCccEEEeec---------CC-----------CCCCccEEEe-----------ecc-cccCcceEEEEe--c----cc
Q 037759 328 RLSCLESLKLAK---------ES-----------KIPRRSNIIL-----------AKY-QFPPSLTHLSFL--N----IE 369 (479)
Q Consensus 328 ~l~~L~~L~l~~---------~~-----------~lp~L~~L~l-----------~~~-~lp~~L~~L~l~--~----~~ 369 (479)
.+++|++|++.+ .. ..|+|+.|.+ .+. .+ ++|+.|++. + +.
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCccc
Confidence 789999999832 11 1378888866 122 46 899999999 3 34
Q ss_pred CCCCCcc-----ccccCccCceEEeccC-----------CCCCcceEeeccCCCCCeeEEc--CCCCCCccEeEEecCCC
Q 037759 370 LMDDPMP-----ALEKLAVLRKLACSSD-----------GFPKLKVLHLKSMLWLQEWTMG--IRAMPKLECSILNPCAH 431 (479)
Q Consensus 370 l~~~~~~-----~l~~l~~L~~l~~~~~-----------~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~ 431 (479)
++..+.. .+..+++|+.|+++.. .+++|+.|.+.+|. +...... ...+++|+.|++++|+.
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4432221 2567889999988652 16789999998875 3322111 13489999999999875
Q ss_pred CCC--CcccccCCCCCCEEEeeCCcH
Q 037759 432 LKM--IPEQLWCLKSLNKLELWWPEL 455 (479)
Q Consensus 432 l~~--lp~~l~~l~~L~~L~l~~c~~ 455 (479)
+. ++.....+++|+.|++++|+.
T Consensus 494 -~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 494 -GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 42 222445689999999999983
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=3.7e-17 Score=166.52 Aligned_cols=305 Identities=14% Similarity=0.020 Sum_probs=190.8
Q ss_pred CCCeEEEEEEcCCCCc-----cccccc--CCCccEEEEecCCCCCCCcch-hHHHhCcCC----ceeEEEecCCcCc---
Q 037759 137 WENVKRFTVHGNLNDF-----EFLDHF--DSFLHSLLHLTLGSHYLDSNY-CEKIYKMFK----FLRVLDLGSLVLI--- 201 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~-----~~~~~~--~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~l~----~L~~L~L~~~~l~--- 201 (479)
.+.++++.+. ++... .++..+ +++|++|.+.+|. +... ....+..++ +|++|++++|.++
T Consensus 27 ~~~L~~L~L~-~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 27 LQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNE----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HTTCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCC----CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred cCCccEEEcc-CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc----CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 3567777777 54443 233444 6788888888776 3332 233444455 6888888888776
Q ss_pred --cCchhhcccccCCeeecCCCCCccC-ChhH----HhcCcCCcEEecCCCcccc-----cchhhhcCccCcEEEeccCC
Q 037759 202 --RYPSEIEYVFLLRYLNLNIPSLKSL-PSSL----LNSLLNLYTLDMPFSYIDH-----TADEFWKMSKLRYLNFGSIT 269 (479)
Q Consensus 202 --~lp~~l~~L~~L~~L~L~~~~l~~l-p~~i----~~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~ 269 (479)
.+|..+..+++|++|++++|.+... +..+ +...++|++|++++|.+.. ++..+..+++|++|+++
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~--- 178 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS--- 178 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC---
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc---
Confidence 3467777888888888888876632 2222 1224568888888886654 45556777888888888
Q ss_pred CCCCCC--C-CCC-----CCcccCeeecCCCCC-------ChhhhcCCCCCCCeEEEEeCCccchHHHH----HH-hccC
Q 037759 270 LSAHPG--K-YCG-----SLENLDFISALHPCC-------CPEDILGRLPNLQNIQIWGDLIYYQSLLS----KI-LYRL 329 (479)
Q Consensus 270 ~~~~~~--p-~i~-----~L~~L~~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~-l~~l 329 (479)
+|.... + .+. ....|+.+++.+... .... +..+++|+.|+++++. ...... .. ...+
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNK--LGDVGMAELCPGLLHPS 255 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSB--CHHHHHHHHHHHHTSTT
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCc--CChHHHHHHHHHHhcCC
Confidence 766443 2 332 344677777765211 1223 5567778888887665 443322 22 2246
Q ss_pred CCccEEEeecCCC--------------CCCccEEEe---ec------------ccccCcceEEEEecccCCCCCc----c
Q 037759 330 SCLESLKLAKESK--------------IPRRSNIIL---AK------------YQFPPSLTHLSFLNIELMDDPM----P 376 (479)
Q Consensus 330 ~~L~~L~l~~~~~--------------lp~L~~L~l---~~------------~~lp~~L~~L~l~~~~l~~~~~----~ 376 (479)
++|++|++++..+ .++|+.|++ .+ ..-+++|++|++++|.++.... .
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 7788887776211 257777777 11 1111589999999998766543 2
Q ss_pred ccccCccCceEEeccCC----------------CCCcceEeeccCCCCC-----eeEEcCCCCCCccEeEEecCCCCCCC
Q 037759 377 ALEKLAVLRKLACSSDG----------------FPKLKVLHLKSMLWLQ-----EWTMGIRAMPKLECSILNPCAHLKMI 435 (479)
Q Consensus 377 ~l~~l~~L~~l~~~~~~----------------~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~l~~c~~l~~l 435 (479)
.+..+++|+.++++.+. .++|+.|++.+|. +. .++.....+++|++|++++| .++..
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~ 413 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDA 413 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHH
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC-CCCHH
Confidence 34567899999887643 4589999999874 44 33333345899999999996 45432
Q ss_pred -----ccccc-CCCCCCEEEeeCCc
Q 037759 436 -----PEQLW-CLKSLNKLELWWPE 454 (479)
Q Consensus 436 -----p~~l~-~l~~L~~L~l~~c~ 454 (479)
...+. ...+|+.|.+.++.
T Consensus 414 ~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 414 GILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHHhccCCcchhheeecccc
Confidence 12222 34578888887764
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=3.1e-16 Score=149.64 Aligned_cols=200 Identities=18% Similarity=0.115 Sum_probs=134.6
Q ss_pred hCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEE
Q 037759 184 YKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYL 263 (479)
Q Consensus 184 ~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 263 (479)
++++++++.++++++.++.+|..+. +++++|++++|.+..++...|.++++|++|++++|.+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5677888888998888888887665 5888899998888877655558888999999988888888764 788888888
Q ss_pred EeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC
Q 037759 264 NFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI 343 (479)
Q Consensus 264 ~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 343 (479)
+++ +|.... .+.. +..+++|+.|+++++. .....+.
T Consensus 83 ~Ls---~N~l~~-------------------l~~~-~~~l~~L~~L~l~~N~--l~~l~~~------------------- 118 (290)
T 1p9a_G 83 DLS---HNQLQS-------------------LPLL-GQTLPALTVLDVSFNR--LTSLPLG------------------- 118 (290)
T ss_dssp ECC---SSCCSS-------------------CCCC-TTTCTTCCEEECCSSC--CCCCCSS-------------------
T ss_pred ECC---CCcCCc-------------------Cchh-hccCCCCCEEECCCCc--CcccCHH-------------------
Confidence 888 654322 1112 4556666666666544 1111001
Q ss_pred CCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEc-CCCCCCcc
Q 037759 344 PRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMG-IRAMPKLE 422 (479)
Q Consensus 344 p~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~ 422 (479)
.+..+ ++|++|++++|.++..+...+..+++|+ .|+++++ .+..++.. ...+++|+
T Consensus 119 --------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~-------------~L~L~~N-~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 119 --------ALRGL-GELQELYLKGNELKTLPPGLLTPTPKLE-------------KLSLANN-NLTELPAGLLNGLENLD 175 (290)
T ss_dssp --------TTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCC-------------EEECTTS-CCSCCCTTTTTTCTTCC
T ss_pred --------HHcCC-CCCCEEECCCCCCCccChhhcccccCCC-------------EEECCCC-cCCccCHHHhcCcCCCC
Confidence 12233 6677777777776654444444444444 4444432 23334332 24578899
Q ss_pred EeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 423 CSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 423 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
.|++.+ +.++.+|.++...++|+.++++++|
T Consensus 176 ~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 176 TLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 999988 4788999888888899999998655
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=5.7e-16 Score=146.69 Aligned_cols=201 Identities=22% Similarity=0.151 Sum_probs=129.8
Q ss_pred CceeEEEecCCcCccCch-hhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEe
Q 037759 188 KFLRVLDLGSLVLIRYPS-EIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNF 265 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l 265 (479)
++|++|++++|.++.++. .+.++++|++|++++|.+..++...|+++++|++|++++|.+..++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 467888888888776654 6777888888888888877777644477888888888888777766 45777888888887
Q ss_pred ccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchH-HHHHHhccCCCccEEEeecCCCCC
Q 037759 266 GSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQS-LLSKILYRLSCLESLKLAKESKIP 344 (479)
Q Consensus 266 ~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~lp 344 (479)
+ +|.... ..... ++.+++|+.|+++++. ... .++..
T Consensus 108 ~---~n~l~~------------------~~~~~-~~~l~~L~~L~l~~n~--l~~~~l~~~------------------- 144 (276)
T 2z62_A 108 V---ETNLAS------------------LENFP-IGHLKTLKELNVAHNL--IQSFKLPEY------------------- 144 (276)
T ss_dssp T---TSCCCC------------------STTCC-CTTCTTCCEEECCSSC--CCCCCCCGG-------------------
T ss_pred C---CCCccc------------------cCchh-cccCCCCCEEECcCCc--cceecCchh-------------------
Confidence 7 544221 11112 5667777777777654 211 01122
Q ss_pred CccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcc-eEeeccCCCCCeeEEcCCCCCCccE
Q 037759 345 RRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLK-VLHLKSMLWLQEWTMGIRAMPKLEC 423 (479)
Q Consensus 345 ~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~L~~ 423 (479)
+..+ ++|+.|++++|.++......+..+++|+ .|. .|+++++ .+..++.......+|+.
T Consensus 145 --------~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------~l~l~L~ls~n-~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 145 --------FSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMP----------LLNLSLDLSLN-PMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp --------GGGC-TTCCEEECCSSCCCEECGGGGHHHHTCT----------TCCEEEECCSS-CCCEECTTSSCSCCEEE
T ss_pred --------hccC-CCCCEEECCCCCCCcCCHHHhhhhhhcc----------ccceeeecCCC-cccccCccccCCCcccE
Confidence 2334 6777777777776655444555554443 111 4555543 34445444444558999
Q ss_pred eEEecCCCCCCCccc-ccCCCCCCEEEeeC
Q 037759 424 SILNPCAHLKMIPEQ-LWCLKSLNKLELWW 452 (479)
Q Consensus 424 L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 452 (479)
|++++| .++.+|.. +..+++|+.|++++
T Consensus 205 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 205 LALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred EECCCC-ceeecCHhHhcccccccEEEccC
Confidence 999985 58888754 57899999999984
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.9e-16 Score=149.75 Aligned_cols=101 Identities=24% Similarity=0.297 Sum_probs=62.4
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.++... .+ ..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|+..|+++++|+
T Consensus 40 l~~L~~L~l~~~~i~----~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK----SV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCC----CC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCcc----cc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 555666666555521 11 23556666677777666666543 566666677777776666666655446666677
Q ss_pred EEecCCCcccccchh-hhcCccCcEEEec
Q 037759 239 TLDMPFSYIDHTADE-FWKMSKLRYLNFG 266 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 266 (479)
+|++++|.+..+|.. ++.+++|++|+++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 777766666666544 5666666666666
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=2.3e-17 Score=169.14 Aligned_cols=232 Identities=16% Similarity=0.053 Sum_probs=147.9
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.+|. +....+..|..+++|++|+|++|.++..++ ++.+++|++|++++|.++.+|. .++|+
T Consensus 33 ~~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSC----CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred CCCccEEEeeCCc----CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 4589999999998 556677889999999999999999986654 8999999999999999888763 48999
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCC
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+|++++|.+..+|. ..+++|++|+++ +|.... | .+++++.|+.+++++ |.
T Consensus 103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~---~N~l~~~~~~~~~~l~~L~~L~Ls~----------------------N~ 155 (487)
T 3oja_A 103 TLHAANNNISRVSC--SRGQGKKNIYLA---NNKITMLRDLDEGCRSRVQYLDLKL----------------------NE 155 (487)
T ss_dssp EEECCSSCCCCEEE--CCCSSCEEEECC---SSCCCSGGGBCGGGGSSEEEEECTT----------------------SC
T ss_pred EEECcCCcCCCCCc--cccCCCCEEECC---CCCCCCCCchhhcCCCCCCEEECCC----------------------CC
Confidence 99999999888875 357889999999 877555 3 444555555555544 22
Q ss_pred ccchHHHHHHhc-cCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCC
Q 037759 316 IYYQSLLSKILY-RLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGF 394 (479)
Q Consensus 316 ~~~~~~~~~~l~-~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~ 394 (479)
.....+..+. .+++|+.|+++++.+- .+. ....+ ++|+.|++++|.++..+. .++.++
T Consensus 156 --l~~~~~~~l~~~l~~L~~L~Ls~N~l~----~~~-~~~~l-~~L~~L~Ls~N~l~~~~~-~~~~l~------------ 214 (487)
T 3oja_A 156 --IDTVNFAELAASSDTLEHLNLQYNFIY----DVK-GQVVF-AKLKTLDLSSNKLAFMGP-EFQSAA------------ 214 (487)
T ss_dssp --CCEEEGGGGGGGTTTCCEEECTTSCCC----EEE-CCCCC-TTCCEEECCSSCCCEECG-GGGGGT------------
T ss_pred --CCCcChHHHhhhCCcccEEecCCCccc----ccc-ccccC-CCCCEEECCCCCCCCCCH-hHcCCC------------
Confidence 2221222222 3444444444431110 000 11123 777888888887654222 233344
Q ss_pred CCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCC-CCCcccccCCCCCCEEEe
Q 037759 395 PKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHL-KMIPEQLWCLKSLNKLEL 450 (479)
Q Consensus 395 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l 450 (479)
+|+.|+++++ .+..+|...+.+++|+.|++.+|+-. ..+|..+..++.|+.+++
T Consensus 215 -~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 215 -GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred -CccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 4444444442 24444444556677777777775433 245555555555555544
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=6.4e-16 Score=148.84 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=85.1
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.++.. ..+. .+..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .+ +++++|+
T Consensus 40 l~~L~~L~l~~~~i----~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSAFGTGV----TTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI-AGLQSIK 110 (308)
T ss_dssp HHTCCEEECTTSCC----CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG-TTCTTCC
T ss_pred cCCcCEEEeeCCCc----cCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh-cCCCCCC
Confidence 67888888887763 3332 46778888888888888887776 788888888888888888775 45 7888888
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecC
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISAL 290 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~ 290 (479)
+|++++|.+..+|. +..+++|++|+++ +|.... +.++.++.|+.+++.
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~---~n~l~~~~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLD---LNQITNISPLAGLTNLQYLSIG 159 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECC---SSCCCCCGGGGGCTTCCEEECC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECC---CCccCcCccccCCCCccEEEcc
Confidence 88888888877765 7888888888888 665433 223333444444443
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=5.6e-15 Score=154.98 Aligned_cols=229 Identities=18% Similarity=0.085 Sum_probs=132.6
Q ss_pred CccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEE
Q 037759 161 FLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTL 240 (479)
Q Consensus 161 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L 240 (479)
+++.|.+.++.. ..++. .+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L----~~lp~-~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGL----TTLPD-CLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCC----SCCCS-CCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEE
T ss_pred CCcEEEecCCCc----CccCh-hhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEE
Confidence 466677666663 22222 111 567777777777776665 45667777777777777764 45677777
Q ss_pred ecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCCCCCChhhhc-CCCCCCCeEEEEeCCcc
Q 037759 241 DMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALHPCCCPEDIL-GRLPNLQNIQIWGDLIY 317 (479)
Q Consensus 241 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~ 317 (479)
++++|.+..+|. .+++|++|+++ +|.... | .+ ++|+.++++++ .+.. + ..+++|+.|++.+|.
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~---~N~l~~lp~~l---~~L~~L~Ls~N--~l~~-l~~~~~~L~~L~L~~N~-- 172 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIF---GNQLTSLPVLP---PGLQELSVSDN--QLAS-LPALPSELCKLWAYNNQ-- 172 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECC---SSCCSCCCCCC---TTCCEEECCSS--CCSC-CCCCCTTCCEEECCSSC--
T ss_pred ECcCCcCCCCCC---CCCCcCEEECC---CCCCCcCCCCC---CCCCEEECcCC--cCCC-cCCccCCCCEEECCCCC--
Confidence 777777766665 45667777777 665544 4 33 34444444431 1111 1 123455555555443
Q ss_pred chHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCCCc
Q 037759 318 YQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKL 397 (479)
Q Consensus 318 ~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L 397 (479)
... ++ ..+++|+.|+++++.+- .+...+++|+.|++++|.++..+ ..+++|
T Consensus 173 l~~-l~---~~~~~L~~L~Ls~N~l~--------~l~~~~~~L~~L~L~~N~l~~l~-----------------~~~~~L 223 (622)
T 3g06_A 173 LTS-LP---MLPSGLQELSVSDNQLA--------SLPTLPSELYKLWAYNNRLTSLP-----------------ALPSGL 223 (622)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCCS--------CCCCCCTTCCEEECCSSCCSSCC-----------------CCCTTC
T ss_pred CCC-Cc---ccCCCCcEEECCCCCCC--------CCCCccchhhEEECcCCcccccC-----------------CCCCCC
Confidence 111 11 22344444444431110 01111255555555555543111 124678
Q ss_pred ceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 398 KVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 398 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
+.|.++++ .+..++ ..+++|+.|++++| .++.+|. .+++|+.|++++|.
T Consensus 224 ~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 224 KELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 88888775 566655 56799999999995 7889986 67899999999987
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=5.2e-16 Score=163.13 Aligned_cols=285 Identities=12% Similarity=0.025 Sum_probs=175.7
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCc-CCc-eeEEEecCCc-Cc--cCchhhcccccCCeeecCCCCCcc-----CCh
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKM-FKF-LRVLDLGSLV-LI--RYPSEIEYVFLLRYLNLNIPSLKS-----LPS 228 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-l~~-L~~L~L~~~~-l~--~lp~~l~~L~~L~~L~L~~~~l~~-----lp~ 228 (479)
+++|+.|.+.++. ........+.. ++. |++|++++|. +. .++....++++|++|++++|.+.. ++.
T Consensus 111 ~~~L~~L~L~~~~----i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 111 LRQLKSVHFRRMI----VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp CTTCCEEEEESCB----CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred CCCCCeEEeeccE----ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 7899999999986 44444444544 444 9999999987 33 334445688999999999997653 333
Q ss_pred hHHhcCcCCcEEecCCCccc-----ccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCC---C---CCC
Q 037759 229 SLLNSLLNLYTLDMPFSYID-----HTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALH---P---CCC 295 (479)
Q Consensus 229 ~i~~~l~~L~~L~l~~~~l~-----~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~---~---~~~ 295 (479)
.. .++++|++|++++|.+. .++..+.++++|++|+++ +|.... | .+.++++|+.+.++. . ...
T Consensus 187 ~~-~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~---~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 187 LA-QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG---DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HH-HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS---SCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HH-hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc---CccHHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 34 78999999999999765 455667889999999999 887665 5 444555555555541 0 011
Q ss_pred hhh----------------------hcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeec---C-------CCC
Q 037759 296 PED----------------------ILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAK---E-------SKI 343 (479)
Q Consensus 296 ~~~----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~---~-------~~l 343 (479)
... .+..+++|+.|+++++.. ....+...+..+++|++|++.. + ...
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l-~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL-ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC-CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC-CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 111 134455666666665541 2233334456667777777653 0 112
Q ss_pred CCccEEEee-----------c------------ccccCcceEEEEecccCCCCCcccccc-CccCceEEecc--------
Q 037759 344 PRRSNIILA-----------K------------YQFPPSLTHLSFLNIELMDDPMPALEK-LAVLRKLACSS-------- 391 (479)
Q Consensus 344 p~L~~L~l~-----------~------------~~lp~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~l~~~~-------- 391 (479)
|+|+.|++. . ..+ ++|++|++..+.++...+..++. +++|+.+.++.
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 456665553 0 113 56666666555554444444443 66666665531
Q ss_pred ------------CCCCCcceEeeccCCC-CCeeE--EcCCCCCCccEeEEecCCCCCC--CcccccCCCCCCEEEeeCCc
Q 037759 392 ------------DGFPKLKVLHLKSMLW-LQEWT--MGIRAMPKLECSILNPCAHLKM--IPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 392 ------------~~~~~L~~L~l~~~~~-l~~~~--~~~~~~~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~ 454 (479)
..+++|+.|.+..|.+ +.... .-...+++|+.|++.+|. ++. ++..+..+++|+.|++++|+
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 1145555555544332 11100 001237889999998864 543 45556788999999999997
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.2e-15 Score=142.27 Aligned_cols=120 Identities=23% Similarity=0.159 Sum_probs=83.0
Q ss_pred CccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhcccccCCeeecCCCCCccCChhHHhcCcCCcE
Q 037759 161 FLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYT 239 (479)
Q Consensus 161 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~ 239 (479)
..+++.+.++.. +.++. .+ .++|+.|++++|.++.+|. .+.++++|++|++++|.++.+|..+|.++++|++
T Consensus 17 ~~~~l~~~~~~l----~~ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKL----TAIPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCC----SSCCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCC----CccCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 466777776663 33221 11 2568888888888887764 6888888888888888888888777678888888
Q ss_pred EecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecC
Q 037759 240 LDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISAL 290 (479)
Q Consensus 240 L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~ 290 (479)
|++++|.+..+|.. +..+++|++|+++ +|.... + .+.+++.|+.+++.
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLD---RNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECC---SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECC---CCccCeeCHHHhCcCcCCCEEECC
Confidence 88888888888754 5778888888888 765444 2 23344444444443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=9.7e-16 Score=146.24 Aligned_cols=170 Identities=16% Similarity=0.099 Sum_probs=131.1
Q ss_pred CCCCeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCe
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRY 215 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 215 (479)
....++.+.+. ++....+|..+.++++.|.+.+|. +..+.+..|..+++|++|++++|.++.++.. +.+++|++
T Consensus 8 ~l~~l~~l~~~-~~~l~~ip~~~~~~l~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCD-KRNLTALPPDLPKDTTILHLSENL----LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECT-TSCCSSCCSCCCTTCCEEECTTSC----CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccCCccEEECC-CCCCCcCCCCCCCCCCEEEcCCCc----CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 45667788887 667777887778899999999998 5666677899999999999999999877654 78899999
Q ss_pred eecCCCCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC-C-C-CCCCcccCeeecCC
Q 037759 216 LNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG-K-Y-CGSLENLDFISALH 291 (479)
Q Consensus 216 L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~-p-~-i~~L~~L~~l~~~~ 291 (479)
|++++|.++.+|..+ .++++|++|++++|.+..+| ..+..+++|++|+++ +|.... | + +..+++|+.+++++
T Consensus 82 L~Ls~N~l~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~---~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK---GNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp EECCSSCCSSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT---TSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred EECCCCcCCcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC---CCCCCccChhhcccccCCCEEECCC
Confidence 999999999999887 89999999999999999987 458999999999999 887666 4 3 34666666666664
Q ss_pred C--CCChhhhcCCCCCCCeEEEEeCC
Q 037759 292 P--CCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 292 ~--~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+ ...+...+..+++|+.|++++|.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCc
Confidence 1 11122214456666666666543
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.2e-16 Score=144.38 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=57.2
Q ss_pred CcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-CccCch-hhcccccCCeeecCC-CCCccCC
Q 037759 151 DFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIRYPS-EIEYVFLLRYLNLNI-PSLKSLP 227 (479)
Q Consensus 151 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~-~l~~L~~L~~L~L~~-~~l~~lp 227 (479)
...+|. +.++++.|.+.++. +..+.+..|..+++|++|++++|. ++.+|. .+.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETH----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCC----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC-CCCcccEEEEeCCc----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 333444 44455555555555 333444455555555555555554 554443 455555555555555 5555555
Q ss_pred hhHHhcCcCCcEEecCCCcccccchhhhcCccCc---EEEec
Q 037759 228 SSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLR---YLNFG 266 (479)
Q Consensus 228 ~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~---~L~l~ 266 (479)
...|.++++|++|++++|.+..+|. +..+++|+ +|+++
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~ 138 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT 138 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC
Confidence 4433555555555555555555554 44444444 55555
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=2.4e-15 Score=144.81 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=141.8
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLR 214 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~ 214 (479)
....++++.+. ++....++.-. +++|+.|.+.+|. +..+.+ +..+++|++|++++|.++.++ .+..+++|+
T Consensus 39 ~l~~L~~L~l~-~~~i~~l~~~~~l~~L~~L~L~~n~----i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAF-GTGVTTIEGVQYLNNLIGLELKDNQ----ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECT-TSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEee-CCCccCchhhhccCCCCEEEccCCc----CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 45678999998 66666666433 9999999999998 444444 899999999999999999876 689999999
Q ss_pred eeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCC
Q 037759 215 YLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCC 294 (479)
Q Consensus 215 ~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~ 294 (479)
+|++++|.++.+|. + +++++|++|++++|.+..++. ++.+++|++|+++ +|....
T Consensus 111 ~L~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~---~n~l~~------------------- 165 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-L-AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG---NAQVSD------------------- 165 (308)
T ss_dssp EEECTTSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC---SSCCCC-------------------
T ss_pred EEECCCCCCCCchh-h-cCCCCCCEEECCCCccCcCcc-ccCCCCccEEEcc---CCcCCC-------------------
Confidence 99999999999876 6 999999999999999999987 9999999999999 875433
Q ss_pred ChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC--CCccEEEeecccccCcceEEEEecccCCC
Q 037759 295 CPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI--PRRSNIILAKYQFPPSLTHLSFLNIELMD 372 (479)
Q Consensus 295 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l--p~L~~L~l~~~~lp~~L~~L~l~~~~l~~ 372 (479)
... +..+++|+.|+++++. ..... .+..+++|++|+++++.+- +. +..+ ++|+.|++++|.++.
T Consensus 166 -~~~-l~~l~~L~~L~l~~n~--l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-------l~~l-~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 -LTP-LANLSKLTTLKADDNK--ISDIS--PLASLPNLIEVHLKNNQISDVSP-------LANT-SNLFIVTLTNQTITN 231 (308)
T ss_dssp -CGG-GTTCTTCCEEECCSSC--CCCCG--GGGGCTTCCEEECTTSCCCBCGG-------GTTC-TTCCEEEEEEEEEEC
T ss_pred -Chh-hcCCCCCCEEECCCCc--cCcCh--hhcCCCCCCEEEccCCccCcccc-------ccCC-CCCCEEEccCCeeec
Confidence 112 4455556666665443 22111 1555666666666552221 11 2234 778888888887654
Q ss_pred CC
Q 037759 373 DP 374 (479)
Q Consensus 373 ~~ 374 (479)
.+
T Consensus 232 ~~ 233 (308)
T 1h6u_A 232 QP 233 (308)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=4.2e-15 Score=138.73 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=131.4
Q ss_pred CeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeee
Q 037759 139 NVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLN 217 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~ 217 (479)
..+++.+. +.....+|..+.+.++.|.+.++. +..+.+..|.++++|++|++++|.++.++ ..+.++++|++|+
T Consensus 15 ~~~~l~~~-~~~l~~~p~~~~~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQ-GKSLDSVPSGIPADTEKLDLQSTG----LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECT-TCCCSSCCSCCCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecC-CCCccccCCCCCCCCCEEEccCCC----cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 34566666 666677887777899999999988 55566678899999999999999998765 4588999999999
Q ss_pred cCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecCCC-
Q 037759 218 LNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISALHP- 292 (479)
Q Consensus 218 L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~~~- 292 (479)
+++|.++.+|...|+++++|++|++++|.+..+|.. +..+++|++|+++ +|.... | .+..++.|+.+++.++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN---TNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc---CCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 999999999887768999999999999999998866 6889999999999 887666 4 4567777777777651
Q ss_pred --CCChhhhcCCCCCCCeEEEEeCC
Q 037759 293 --CCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 293 --~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
...... +..+++|+.|++.+|.
T Consensus 167 l~~~~~~~-~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 167 LQSVPHGA-FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSCCCTTT-TTTCTTCCEEECCSCC
T ss_pred CCccCHHH-HhCCCCCCEEEeeCCc
Confidence 112223 6667777777777554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=4.1e-15 Score=140.52 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=116.0
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhcccccC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVFLL 213 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~~L 213 (479)
....++.+.+. ++....++.-. +++|+.|.+.+|.. ... ..+..+++|++|++++|.++.+|. .+.++++|
T Consensus 39 ~l~~L~~L~l~-~~~i~~~~~l~~l~~L~~L~l~~n~l----~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIAN-NSDIKSVQGIQYLPNVRYLALGGNKL----HDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECT-TSCCCCCTTGGGCTTCCEEECTTSCC----CCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeC-CCCcccccccccCCCCcEEECCCCCC----CCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 45778888888 66666555444 99999999999984 333 378999999999999999997765 47899999
Q ss_pred CeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeec
Q 037759 214 RYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISA 289 (479)
Q Consensus 214 ~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~ 289 (479)
++|++++|.++.+|+..|+++++|++|++++|.+..+|.. ++.+++|++|+++ +|.... | .++.++.|+.+++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS---YNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC---CCCcCccCHHHhcCCccCCEEEC
Confidence 9999999999999887669999999999999999999865 6899999999999 876554 3 2334444444444
Q ss_pred C
Q 037759 290 L 290 (479)
Q Consensus 290 ~ 290 (479)
.
T Consensus 189 ~ 189 (272)
T 3rfs_A 189 Y 189 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=2.6e-16 Score=165.47 Aligned_cols=284 Identities=13% Similarity=0.095 Sum_probs=179.4
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHh-CcCCceeEEEecCC-cCcc--CchhhcccccCCeeecCCCCCccC-----Chh
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIY-KMFKFLRVLDLGSL-VLIR--YPSEIEYVFLLRYLNLNIPSLKSL-----PSS 229 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~-~l~~--lp~~l~~L~~L~~L~L~~~~l~~l-----p~~ 229 (479)
+++|+.|.+.++. ........+ ..+++|++|++++| .++. ++..+.++++|++|++++|.++.. +.-
T Consensus 104 ~~~L~~L~L~~~~----~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 104 YTWLEEIRLKRMV----VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp CTTCCEEEEESCB----CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCCeEEeeCcE----EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 7899999999987 333333444 47999999999999 4653 555566899999999999986542 222
Q ss_pred HHhcCcCCcEEecCCCc--c--cccchhhhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCC----------
Q 037759 230 LLNSLLNLYTLDMPFSY--I--DHTADEFWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHP---------- 292 (479)
Q Consensus 230 i~~~l~~L~~L~l~~~~--l--~~lp~~~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~---------- 292 (479)
. ..+++|++|++++|. + ..++.-+.++++|++|+++ +|.... | .+.++++|+.+.+...
T Consensus 180 ~-~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~---~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 180 P-DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN---RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp C-TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC---TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred h-hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC---CCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 2 467899999999986 2 2233334667999999999 885433 3 3334445555543210
Q ss_pred ----------------------CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecC----------
Q 037759 293 ----------------------CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKE---------- 340 (479)
Q Consensus 293 ----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---------- 340 (479)
...+...+..+++|+.|+++++.+ ....+...+..+++|++|.+.+.
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l-~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV-QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC-CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC-CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 011111123567888888886652 33444555678888998888762
Q ss_pred CCCCCccEEEee------------c---------ccccCcceEEEEecccCCCCCccccc-cCccCceEEec--c-----
Q 037759 341 SKIPRRSNIILA------------K---------YQFPPSLTHLSFLNIELMDDPMPALE-KLAVLRKLACS--S----- 391 (479)
Q Consensus 341 ~~lp~L~~L~l~------------~---------~~lp~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~l~~~--~----- 391 (479)
..+|+|+.|+++ + ..+ ++|+.|.+..+.++...+..+. .+++|+.+.++ .
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 113677777551 0 125 6777777766666554444443 47777777776 1
Q ss_pred ---------------CCCCCcceEeeccCCCCCeeEEc--CCCCCCccEeEEecCCCCCC-Ccccc-cCCCCCCEEEeeC
Q 037759 392 ---------------DGFPKLKVLHLKSMLWLQEWTMG--IRAMPKLECSILNPCAHLKM-IPEQL-WCLKSLNKLELWW 452 (479)
Q Consensus 392 ---------------~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~-lp~~l-~~l~~L~~L~l~~ 452 (479)
..+++|+.|.+.+ .+...... ...+++|+.|++.+|. ++. .+..+ ..+++|+.|++++
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEES
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcC
Confidence 1134566666643 22221100 1127889999999875 432 22223 5689999999999
Q ss_pred CcH
Q 037759 453 PEL 455 (479)
Q Consensus 453 c~~ 455 (479)
|+.
T Consensus 491 n~~ 493 (594)
T 2p1m_B 491 CPF 493 (594)
T ss_dssp CSC
T ss_pred CCC
Confidence 983
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.2e-14 Score=142.43 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=64.4
Q ss_pred EEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cCc-hhhcccccCCe-eecC
Q 037759 143 FTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RYP-SEIEYVFLLRY-LNLN 219 (479)
Q Consensus 143 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp-~~l~~L~~L~~-L~L~ 219 (479)
+... +....++|..+.++++.|.+.+|. +..+...+|.++++|++|+|++|.+. .+| ..|.++++|+. +.+.
T Consensus 14 v~C~-~~~Lt~iP~~l~~~l~~L~Ls~N~----i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 14 FLCQ-ESKVTEIPSDLPRNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEE-STTCCSCCTTCCTTCSEEEEESCC----CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEec-CCCCCccCcCcCCCCCEEEccCCc----CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4444 444555665555566666666665 44455555666666666666666643 333 23455555543 3344
Q ss_pred CCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEec
Q 037759 220 IPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFG 266 (479)
Q Consensus 220 ~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 266 (479)
+|.+..+|+..|.++++|++|++++|.+..+|.. +....++..|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 4556666554445666666666666655555532 3344445555554
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=1.9e-15 Score=145.84 Aligned_cols=193 Identities=18% Similarity=0.137 Sum_probs=121.3
Q ss_pred cCCceeEEEecCCcCc-cCchhh--cccccCCeeecCCCCCccCChhHHhcC-----cCCcEEecCCCcccccc-hhhhc
Q 037759 186 MFKFLRVLDLGSLVLI-RYPSEI--EYVFLLRYLNLNIPSLKSLPSSLLNSL-----LNLYTLDMPFSYIDHTA-DEFWK 256 (479)
Q Consensus 186 ~l~~L~~L~L~~~~l~-~lp~~l--~~L~~L~~L~L~~~~l~~lp~~i~~~l-----~~L~~L~l~~~~l~~lp-~~~~~ 256 (479)
++++|++|++++|.++ .+|..+ ..+++|++|++++|.++.+|..+ +++ ++|++|++++|.+..++ ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5667777777777766 456554 66777777777777776666555 655 67777777777666665 45667
Q ss_pred CccCcEEEeccCCCCCCCC----C-CC--CCCcccCeeecCCCCCC-----hhhhcCCCCCCCeEEEEeCCccchHHHH-
Q 037759 257 MSKLRYLNFGSITLSAHPG----K-YC--GSLENLDFISALHPCCC-----PEDILGRLPNLQNIQIWGDLIYYQSLLS- 323 (479)
Q Consensus 257 L~~L~~L~l~~~~~~~~~~----p-~i--~~L~~L~~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~- 323 (479)
+++|++|+++ +|.... | .+ +.++.|+.+++++.... ....+..+++|+.|++++|. .....+
T Consensus 172 l~~L~~L~Ls---~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~ 246 (312)
T 1wwl_A 172 FPALSTLDLS---DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGA 246 (312)
T ss_dssp CSSCCEEECC---SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCC
T ss_pred CCCCCEEECC---CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccch
Confidence 7777777777 665332 2 33 46666666666652211 11213466778888887655 333221
Q ss_pred HHhccCCCccEEEeecCCCC--CCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCCC
Q 037759 324 KILYRLSCLESLKLAKESKI--PRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFP 395 (479)
Q Consensus 324 ~~l~~l~~L~~L~l~~~~~l--p~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~ 395 (479)
..+..+++|++|+++++.+- |. .++++|++|++++|.++.. +.+..+++|+.++++.+.+.
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~ip~---------~~~~~L~~L~Ls~N~l~~~--p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQVPK---------GLPAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSSCCS---------SCCSEEEEEECCSSCCCSC--CCTTTSCEEEEEECTTCTTT
T ss_pred hhhhhcCCCCEEECCCCccChhhh---------hccCCceEEECCCCCCCCC--hhHhhCCCCCEEeccCCCCC
Confidence 23344677777777763221 11 1226889999999998765 44888888888888877664
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2.1e-15 Score=149.97 Aligned_cols=183 Identities=14% Similarity=0.069 Sum_probs=92.0
Q ss_pred CCCccEEEEecCCCCCCCcch----hHHHhCcCCceeEEEecCCcCc----cCchhh-------cccccCCeeecCCCCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNY----CEKIYKMFKFLRVLDLGSLVLI----RYPSEI-------EYVFLLRYLNLNIPSL 223 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~----~lp~~l-------~~L~~L~~L~L~~~~l 223 (479)
+++|+.|.+.+|.. ... ....+..+++|++|+|++|.+. .+|..+ .++++|++|++++|.+
T Consensus 31 ~~~L~~L~L~~n~i----~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 31 DDSVKEIVLSGNTI----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp CSCCCEEECTTSEE----CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred CCCccEEECCCCCC----CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 56666666666652 222 2233556666666666665433 223333 4556666666666665
Q ss_pred cc-----CChhHHhcCcCCcEEecCCCcccc-----cchhhhcC---------ccCcEEEeccCCCCCCCCCCCCCCccc
Q 037759 224 KS-----LPSSLLNSLLNLYTLDMPFSYIDH-----TADEFWKM---------SKLRYLNFGSITLSAHPGKYCGSLENL 284 (479)
Q Consensus 224 ~~-----lp~~i~~~l~~L~~L~l~~~~l~~-----lp~~~~~L---------~~L~~L~l~~~~~~~~~~p~i~~L~~L 284 (479)
.. +|..+ .++++|++|++++|.+.. ++..+..+ ++|++|+++ +|...
T Consensus 107 ~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~---~n~l~---------- 172 (386)
T 2ca6_A 107 GPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG---RNRLE---------- 172 (386)
T ss_dssp CTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC---SSCCT----------
T ss_pred CHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC---CCCCC----------
Confidence 54 45455 666666666666665432 22223333 566666666 43211
Q ss_pred CeeecCCCCCCh----hhhcCCCCCCCeEEEEeCCccchHH----HHH-HhccCCCccEEEeecCCCCC-CccEEEeecc
Q 037759 285 DFISALHPCCCP----EDILGRLPNLQNIQIWGDLIYYQSL----LSK-ILYRLSCLESLKLAKESKIP-RRSNIILAKY 354 (479)
Q Consensus 285 ~~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~----~~~-~l~~l~~L~~L~l~~~~~lp-~L~~L~l~~~ 354 (479)
.... .. +..+++|+.|++++|. .... +.. .+..+++|++|+++++.+-. ....+.-.+.
T Consensus 173 --------~~~~~~l~~~-l~~~~~L~~L~L~~n~--l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 173 --------NGSMKEWAKT-FQSHRLLHTVKMVQNG--IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp --------GGGHHHHHHH-HHHCTTCCEEECCSSC--CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred --------cHHHHHHHHH-HHhCCCcCEEECcCCC--CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 0111 23 5567777777777665 3321 223 55666677777766532200 0000000122
Q ss_pred cccCcceEEEEecccCC
Q 037759 355 QFPPSLTHLSFLNIELM 371 (479)
Q Consensus 355 ~lp~~L~~L~l~~~~l~ 371 (479)
.+ ++|++|++++|.+.
T Consensus 242 ~~-~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 242 SW-PNLRELGLNDCLLS 257 (386)
T ss_dssp GC-TTCCEEECTTCCCC
T ss_pred cC-CCcCEEECCCCCCc
Confidence 33 66666666666653
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=3.1e-14 Score=137.15 Aligned_cols=229 Identities=14% Similarity=0.031 Sum_probs=142.5
Q ss_pred CCCccEEEEecCCCCCCCcchhHH--HhCcCCceeEEEecCCcCc-cCchhh--cccccCCeeecCCCCCccC-C----h
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEK--IYKMFKFLRVLDLGSLVLI-RYPSEI--EYVFLLRYLNLNIPSLKSL-P----S 228 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~-~lp~~l--~~L~~L~~L~L~~~~l~~l-p----~ 228 (479)
...++.+.+.++... ...... .+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.+... | .
T Consensus 63 ~~~l~~l~l~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP---AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCB---HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCC---HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 455677777776631 111111 2234567999999999987 557777 8899999999999998852 2 2
Q ss_pred hHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCC
Q 037759 229 SLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQ 307 (479)
Q Consensus 229 ~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~ 307 (479)
.+ ..+++|++|++++|.+..++ ..++.+++|++|+++ +|..... ..+ ..... ++.+++|+
T Consensus 140 ~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls---~N~l~~~--------~~~------~~~~~-~~~l~~L~ 200 (310)
T 4glp_A 140 QQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS---DNPGLGE--------RGL------MAALC-PHKFPAIQ 200 (310)
T ss_dssp HT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC---SCTTCHH--------HHH------HTTSC-TTSSCCCC
T ss_pred Hh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC---CCCCccc--------hhh------hHHHh-hhcCCCCC
Confidence 33 57999999999999888876 568899999999999 7642210 000 00011 35677888
Q ss_pred eEEEEeCCccch--HHHHHH-hccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCccC
Q 037759 308 NIQIWGDLIYYQ--SLLSKI-LYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVL 384 (479)
Q Consensus 308 ~L~l~~~~~~~~--~~~~~~-l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L 384 (479)
.|++++|. .. ...+.. +..+ ++|++|++++|.+.....+.++.+.
T Consensus 201 ~L~Ls~N~--l~~l~~~~~~l~~~l----------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~-- 248 (310)
T 4glp_A 201 NLALRNTG--METPTGVCAALAAAG----------------------------VQPHSLDLSHNSLRATVNPSAPRCM-- 248 (310)
T ss_dssp SCBCCSSC--CCCHHHHHHHHHHHT----------------------------CCCSSEECTTSCCCCCCCSCCSSCC--
T ss_pred EEECCCCC--CCchHHHHHHHHhcC----------------------------CCCCEEECCCCCCCccchhhHHhcc--
Confidence 88888765 32 222222 3455 4455555555655443222222221
Q ss_pred ceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCCCccEeEEecCCCCCCCcccccCCCCCCEEEeeCCc
Q 037759 385 RKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMPKLECSILNPCAHLKMIPEQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 385 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 454 (479)
.+++|+.|+++++ .++.++. ..+++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus 249 --------~~~~L~~L~Ls~N-~l~~lp~--~~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 --------WSSALNSLNLSFA-GLEQVPK--GLPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp --------CCTTCCCEECCSS-CCCSCCS--CCCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred --------CcCcCCEEECCCC-CCCchhh--hhcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 1244555555543 2343332 22478888888874 6777764 5678888888888876
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.7e-14 Score=137.63 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=108.9
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.++.. ..+ ..+..+++|++|++++|.++.++. +.++++|++|++++|.++.+|. + +++++|+
T Consensus 45 l~~L~~L~l~~~~i----~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNSDI----KSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTSCC----CCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCC
T ss_pred cCcccEEEccCCCc----ccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCC
Confidence 67777777777763 223 236777778888888887777665 7777778888888777777654 5 7777888
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccc
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYY 318 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 318 (479)
+|++++|.+..++ .+..+++|++|+++ +|.... +.. ++.+++|+.|++++|. .
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~---~n~l~~--------------------~~~-l~~l~~L~~L~L~~N~--l 168 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLG---NNKITD--------------------ITV-LSRLTKLDTLSLEDNQ--I 168 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECC---SSCCCC--------------------CGG-GGGCTTCSEEECCSSC--C
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEcc---CCcCCc--------------------chh-hccCCCCCEEEccCCc--c
Confidence 8888877777764 47777778888777 554221 133 5666677777776554 2
Q ss_pred hHHHHHHhccCCCccEEEeecCCC--CCCccEEEeecccccCcceEEEEecccCCCCCc
Q 037759 319 QSLLSKILYRLSCLESLKLAKESK--IPRRSNIILAKYQFPPSLTHLSFLNIELMDDPM 375 (479)
Q Consensus 319 ~~~~~~~l~~l~~L~~L~l~~~~~--lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~ 375 (479)
....+ +..+++|+.|+++++.+ +|. +..+ ++|+.|++++|.+...+.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l~~-------l~~l-~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDLRA-------LAGL-KNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBCGG-------GTTC-TTCSEEEEEEEEEECCCE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCChh-------hccC-CCCCEEECcCCcccCCcc
Confidence 22221 55666666666655221 112 2233 677777777776654443
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.7e-15 Score=147.52 Aligned_cols=127 Identities=17% Similarity=0.070 Sum_probs=95.1
Q ss_pred CCeEEEEEEcCCCCccc-cccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cCchhhcccccCC
Q 037759 138 ENVKRFTVHGNLNDFEF-LDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RYPSEIEYVFLLR 214 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~-~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~l~~L~~L~ 214 (479)
..++.+.+. ++..... +... +++|+.|.+.+|.. .....+..+..+++|++|++++|.++ ..|..++.+++|+
T Consensus 70 ~~l~~L~l~-~n~l~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCP-RSFMDQPLAEHFSPFRVQHMDLSNSVI---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECT-TCEECSCCCSCCCCBCCCEEECTTCEE---CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcC-CccccccchhhccCCCCCEEEccCCCc---CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 345555555 3333223 3333 88999999988873 22236678889999999999999887 5677888899999
Q ss_pred eeecCCC-CCcc--CChhHHhcCcCCcEEecCCC-cccc--cchhhhcCc-cCcEEEeccCCCCC
Q 037759 215 YLNLNIP-SLKS--LPSSLLNSLLNLYTLDMPFS-YIDH--TADEFWKMS-KLRYLNFGSITLSA 272 (479)
Q Consensus 215 ~L~L~~~-~l~~--lp~~i~~~l~~L~~L~l~~~-~l~~--lp~~~~~L~-~L~~L~l~~~~~~~ 272 (479)
+|++++| .++. ++..+ .++++|++|++++| .+.. ++..+..++ +|++|+++ +|.
T Consensus 146 ~L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~---~~~ 206 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS---GYR 206 (336)
T ss_dssp EEECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC---SCG
T ss_pred EEECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC---CCc
Confidence 9999998 5773 66656 88999999999998 8775 677788899 99999999 763
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=7.6e-15 Score=145.95 Aligned_cols=209 Identities=12% Similarity=-0.018 Sum_probs=140.3
Q ss_pred CCCeEEEEEEcCCCCcc-----ccccc--CCCccEEEEecCCCCCCCcchh-------HHHhCcCCceeEEEecCCcCcc
Q 037759 137 WENVKRFTVHGNLNDFE-----FLDHF--DSFLHSLLHLTLGSHYLDSNYC-------EKIYKMFKFLRVLDLGSLVLIR 202 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~-----~~~~~--~~~Lr~L~l~~~~~~~~~~~~~-------~~~~~~l~~L~~L~L~~~~l~~ 202 (479)
.+.+++|.+. ++.... ++..+ +++|+.|.+.++.... +.... ...+..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~-l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLS-GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR-VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp CSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS-CGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred CCCccEEECC-CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc-cccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 4568899988 544332 23334 8999999999985432 22222 2345899999999999999885
Q ss_pred -----CchhhcccccCCeeecCCCCCccC-----ChhHHhcC---------cCCcEEecCCCccc--ccc---hhhhcCc
Q 037759 203 -----YPSEIEYVFLLRYLNLNIPSLKSL-----PSSLLNSL---------LNLYTLDMPFSYID--HTA---DEFWKMS 258 (479)
Q Consensus 203 -----lp~~l~~L~~L~~L~L~~~~l~~l-----p~~i~~~l---------~~L~~L~l~~~~l~--~lp---~~~~~L~ 258 (479)
+|..+.++++|++|++++|.+... +..+ ..+ ++|++|++++|.+. .+| ..+..++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL-QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH-HHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHH-HHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 688899999999999999998733 3333 445 89999999999775 455 5688999
Q ss_pred cCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChh-hhcCCCCCCCeEEEEeCCccch----HHHHHHhccCCCcc
Q 037759 259 KLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPE-DILGRLPNLQNIQIWGDLIYYQ----SLLSKILYRLSCLE 333 (479)
Q Consensus 259 ~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~ 333 (479)
+|++|+++ +|.....+ ...... . +..+++|+.|++++|. .. ..++..+..+++|+
T Consensus 188 ~L~~L~L~---~n~l~~~g--------------~~~l~~~~-l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 188 LLHTVKMV---QNGIRPEG--------------IEHLLLEG-LAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp TCCEEECC---SSCCCHHH--------------HHHHHHTT-GGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCC
T ss_pred CcCEEECc---CCCCCHhH--------------HHHHHHHH-hhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcC
Confidence 99999999 76432100 000122 3 6667777777777665 43 55666777777788
Q ss_pred EEEeecCCCCC----CccEEEeec--ccccCcceEEEEecccCCC
Q 037759 334 SLKLAKESKIP----RRSNIILAK--YQFPPSLTHLSFLNIELMD 372 (479)
Q Consensus 334 ~L~l~~~~~lp----~L~~L~l~~--~~lp~~L~~L~l~~~~l~~ 372 (479)
+|+++++.+-. .+.. .+ ..+ ++|++|++++|.++.
T Consensus 248 ~L~L~~n~i~~~~~~~l~~---~l~~~~~-~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVD---AFSKLEN-IGLQTLRLQYNEIEL 288 (386)
T ss_dssp EEECTTCCCCHHHHHHHHH---HHHTCSS-CCCCEEECCSSCCBH
T ss_pred EEECCCCCCchhhHHHHHH---HHhhccC-CCeEEEECcCCcCCH
Confidence 87777632210 0000 11 114 777788888777644
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=2.1e-14 Score=150.35 Aligned_cols=180 Identities=18% Similarity=0.205 Sum_probs=116.3
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.++.. ..+ ..+..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+..+| .+ +.+++|+
T Consensus 42 L~~L~~L~l~~n~i----~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~ 112 (605)
T 1m9s_A 42 LNSIDQIIANNSDI----KSV--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLK 112 (605)
T ss_dssp HTTCCCCBCTTCCC----CCC--TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCC
T ss_pred CCCCCEEECcCCCC----CCC--hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCC
Confidence 67777777777763 222 246777778888888877776665 777777888888877777766 45 7777888
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccc
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYY 318 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 318 (479)
.|++++|.+..+| .+..+++|+.|+++ +|.... +.. ++.+++|+.|++++|. .
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls---~N~l~~--------------------l~~-l~~l~~L~~L~Ls~N~--l 165 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLG---NNKITD--------------------ITV-LSRLTKLDTLSLEDNQ--I 165 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECC---SSCCCC--------------------CGG-GGSCTTCSEEECCSSC--C
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECC---CCccCC--------------------chh-hcccCCCCEEECcCCc--C
Confidence 8888877777765 37777778888777 654221 133 6667777777777655 3
Q ss_pred hHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCCCCCccccccCc
Q 037759 319 QSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLA 382 (479)
Q Consensus 319 ~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~ 382 (479)
....+ +..+++|+.|+++++.+- .+. .+..+ ++|+.|+|++|.+...+...+..+.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~-~l~----~l~~l-~~L~~L~L~~N~l~~~p~~~~~~l~ 221 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHIS-DLR----ALAGL-KNLDVLELFSQECLNKPINHQSNLV 221 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCC-BCG----GGTTC-TTCSEEECCSEEEECCCCCCCSSCE
T ss_pred CCchh--hccCCCCCEEECcCCCCC-CCh----HHccC-CCCCEEEccCCcCcCCcccccccEE
Confidence 33222 666777777777652221 111 22344 7788888888877666555444443
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=6.8e-15 Score=143.28 Aligned_cols=226 Identities=17% Similarity=0.133 Sum_probs=133.4
Q ss_pred CCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc--CchhhcccccCCeeecCCCCCc-cCChhHHhcCcC
Q 037759 160 SFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR--YPSEIEYVFLLRYLNLNIPSLK-SLPSSLLNSLLN 236 (479)
Q Consensus 160 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~l~~L~~L~~L~L~~~~l~-~lp~~i~~~l~~ 236 (479)
++++.|.+.++... ...+. +..+++|++|++++|.+.. +|..+..+++|++|++++|.+. ..|..+ +++++
T Consensus 70 ~~l~~L~l~~n~l~----~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~ 143 (336)
T 2ast_B 70 QGVIAFRCPRSFMD----QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSN 143 (336)
T ss_dssp TTCSEEECTTCEEC----SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTT
T ss_pred ccceEEEcCCcccc----ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCC
Confidence 67777777766532 22222 4456777777777777652 5666777777777777777766 455555 77777
Q ss_pred CcEEecCCC-cccc--cchhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCC-CCCeEEEE
Q 037759 237 LYTLDMPFS-YIDH--TADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLP-NLQNIQIW 312 (479)
Q Consensus 237 L~~L~l~~~-~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~-~L~~L~l~ 312 (479)
|++|++++| .+.. +|..+.++++|++|+++ +|.... . ...... +..++ +|+.|+++
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~---~~~~l~----------~------~~~~~~-~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS---WCFDFT----------E------KHVQVA-VAHVSETITQLNLS 203 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC---CCTTCC----------H------HHHHHH-HHHSCTTCCEEECC
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC---CCCCcC----------h------HHHHHH-HHhcccCCCEEEeC
Confidence 777777777 5653 56666777777777777 552110 0 011223 66778 88888888
Q ss_pred eC--CccchHHHHHHhccCCCccEEEeecCCCCC--CccEEEeecccccCcceEEEEeccc-CCCCCccccccCccCceE
Q 037759 313 GD--LIYYQSLLSKILYRLSCLESLKLAKESKIP--RRSNIILAKYQFPPSLTHLSFLNIE-LMDDPMPALEKLAVLRKL 387 (479)
Q Consensus 313 ~~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp--~L~~L~l~~~~lp~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~l 387 (479)
++ .. ....++..+..+++|++|++++...+. .+. .+..+ ++|++|++++|. +....+..++.
T Consensus 204 ~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~------- 270 (336)
T 2ast_B 204 GYRKNL-QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFQL-NYLQHLSLSRCYDIIPETLLELGE------- 270 (336)
T ss_dssp SCGGGS-CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----GGGGC-TTCCEEECTTCTTCCGGGGGGGGG-------
T ss_pred CCcccC-CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH----HHhCC-CCCCEeeCCCCCCCCHHHHHHHhc-------
Confidence 76 31 236667777788888888887743221 111 23345 888888888884 32222223333
Q ss_pred EeccCCCCCcceEeeccCCCCCeeEEcCCCC-CCccEeEEecCCCCCCC
Q 037759 388 ACSSDGFPKLKVLHLKSMLWLQEWTMGIRAM-PKLECSILNPCAHLKMI 435 (479)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~l 435 (479)
+++|+.|++.+| +..-.+ ..+ ..|+.|++.+ +.++..
T Consensus 271 ------~~~L~~L~l~~~--i~~~~~--~~l~~~l~~L~l~~-n~l~~~ 308 (336)
T 2ast_B 271 ------IPTLKTLQVFGI--VPDGTL--QLLKEALPHLQINC-SHFTTI 308 (336)
T ss_dssp ------CTTCCEEECTTS--SCTTCH--HHHHHHSTTSEESC-CCSCCT
T ss_pred ------CCCCCEEeccCc--cCHHHH--HHHHhhCcceEEec-ccCccc
Confidence 455666666655 111100 112 2366666764 556543
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=6.5e-15 Score=133.26 Aligned_cols=141 Identities=20% Similarity=0.205 Sum_probs=107.5
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hcccccCCeeecCC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFLLRYLNLNI 220 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~L~~ 220 (479)
.+... +.....+|..+.++++.|.+.++. +..+.+..|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 11 ~v~c~-~~~l~~~p~~~~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECY-SQGRTSVPTGIPAQTTYLDLETNS----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECC-SSCCSSCCSCCCTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEec-CCCccCCCCCCCCCCcEEEcCCCc----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34444 455555676667889999999987 4556667788999999999999999877654 68899999999999
Q ss_pred CCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecC
Q 037759 221 PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISAL 290 (479)
Q Consensus 221 ~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~ 290 (479)
|.++.+|...|+++++|++|++++|.+..+|.. +..+++|++|+++ +|.... | .+..++.|+.+++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~---~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY---QNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC---CCccceeCHHHhccCCCccEEEec
Confidence 999988887668899999999999988888765 6889999999999 776544 3 23344444444443
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1.5e-14 Score=133.90 Aligned_cols=169 Identities=10% Similarity=0.085 Sum_probs=132.5
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecC-CcCccCc-hhhcccc
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGS-LVLIRYP-SEIEYVF 211 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp-~~l~~L~ 211 (479)
...++.+.+. ++....++. .+ +++|+.|.+.+|.. +..+.+..|.++++|++|++++ |.++.+| ..+.+++
T Consensus 30 ~~~l~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n~~---l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 30 PPSTQTLKLI-ETHLRTIPSHAFSNLPNISRIYVSIDVT---LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp CTTCCEEEEE-SCCCSEECTTTTTTCTTCCEEEEECCSS---CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CCcccEEEEe-CCcceEECHHHccCCCCCcEEeCCCCCC---cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 4578999999 777776766 44 89999999999963 4456667889999999999998 8999876 5688999
Q ss_pred cCCeeecCCCCCccCChhHHhcCcCCc---EEecCCC-cccccchh-hhcCccCc-EEEeccCCCCCCCC-C-CCCCCcc
Q 037759 212 LLRYLNLNIPSLKSLPSSLLNSLLNLY---TLDMPFS-YIDHTADE-FWKMSKLR-YLNFGSITLSAHPG-K-YCGSLEN 283 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~~i~~~l~~L~---~L~l~~~-~l~~lp~~-~~~L~~L~-~L~l~~~~~~~~~~-p-~i~~L~~ 283 (479)
+|++|++++|.++.+|. + +.+++|+ +|++++| .+..+|.. +..+++|+ +|+++ +|.... | .......
T Consensus 106 ~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~---~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY---NNGFTSVQGYAFNGTK 180 (239)
T ss_dssp TCCEEEEEEECCCSCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC---SCCCCEECTTTTTTCE
T ss_pred CCCEEeCCCCCCccccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC---CCCCcccCHhhcCCCC
Confidence 99999999999999987 5 8888888 9999999 99999865 89999999 99999 887666 6 4443367
Q ss_pred cCeeecCCCC--C-C-hhhhcCCC-CCCCeEEEEeCC
Q 037759 284 LDFISALHPC--C-C-PEDILGRL-PNLQNIQIWGDL 315 (479)
Q Consensus 284 L~~l~~~~~~--~-~-~~~~l~~l-~~L~~L~l~~~~ 315 (479)
|+.+++.+.. . . ... +..+ ++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp EEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCC
T ss_pred CCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCc
Confidence 7777776531 1 1 122 5566 677777776543
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=6.7e-14 Score=128.62 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=109.5
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhcccccCCeeecCC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVFLLRYLNLNI 220 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~L~~ 220 (479)
.+... +.....+|..+.++|+.|.+.+|. +..+.+..|..+++|++|++++|.+..+|. .+..+++|++|++++
T Consensus 23 ~v~c~-~~~l~~ip~~~~~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 23 TVDCR-SKRHASVPAGIPTNAQILYLHDNQ----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EEECT-TSCCSSCCSCCCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeEcc-CCCcCccCCCCCCCCCEEEcCCCc----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45555 566667888778999999999998 556667889999999999999999998874 468999999999999
Q ss_pred CCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC
Q 037759 221 PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 221 ~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
|.++.+|...|..+++|++|++++|.+..+|..+..+++|++|+++ +|....
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~---~N~l~~ 149 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD---QNQLKS 149 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECC---SSCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECC---CCcCCc
Confidence 9999999887689999999999999999999999999999999999 765443
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=4.8e-14 Score=128.72 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=106.5
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccC-chhhcccccCCeeecCC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNI 220 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~ 220 (479)
.+... +.....+|..+.++++.|.+.+|. +..+.+..|..+++|++|+|++|.++.+ |..|.++++|++|++++
T Consensus 15 ~v~c~-~~~l~~iP~~l~~~l~~L~l~~n~----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCR-GKGLTEIPTNLPETITEIRLEQNT----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECT-TSCCSSCCSSCCTTCCEEECCSSC----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcC-CCCcCcCCCccCcCCCEEECCCCc----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 44555 556666777778899999999998 5666677889999999999999999866 78899999999999999
Q ss_pred CCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC
Q 037759 221 PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 221 ~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
|.++.+|..+|.++++|++|++++|.+..++ ..+..+++|++|+++ +|....
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~---~N~l~~ 142 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY---DNKLQT 142 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCSC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC---CCcCCE
Confidence 9999999887789999999999999988885 568899999999999 776443
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=1.1e-14 Score=143.39 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=41.2
Q ss_pred hhHHHhCcCCceeEEEecCCcCccCc-----hhhcccc-cCCeeecCCCCCccCChhHHhcC-----cCCcEEecCCCcc
Q 037759 179 YCEKIYKMFKFLRVLDLGSLVLIRYP-----SEIEYVF-LLRYLNLNIPSLKSLPSSLLNSL-----LNLYTLDMPFSYI 247 (479)
Q Consensus 179 ~~~~~~~~l~~L~~L~L~~~~l~~lp-----~~l~~L~-~L~~L~L~~~~l~~lp~~i~~~l-----~~L~~L~l~~~~l 247 (479)
..+.++...++|++|++++|.++..+ ..+..++ +|++|++++|.+.......|..+ ++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 34444444444555555555555333 3444444 55555555555554322221332 5555555555544
Q ss_pred cccchh-----hhcC-ccCcEEEec
Q 037759 248 DHTADE-----FWKM-SKLRYLNFG 266 (479)
Q Consensus 248 ~~lp~~-----~~~L-~~L~~L~l~ 266 (479)
...+.. +..+ ++|++|+++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECc
Confidence 433321 2223 455555555
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1.9e-13 Score=130.33 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=123.9
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLR 214 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~ 214 (479)
....++.+.+. ++....++.-- +++|+.|.+.+|. +..+.+ +..+++|++|++++|.++.+|. +..+++|+
T Consensus 44 ~l~~L~~L~l~-~~~i~~~~~~~~l~~L~~L~L~~n~----l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIAN-NSDIKSVQGIQYLPNVTKLFLNGNK----LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECT-TSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hcCcccEEEcc-CCCcccChhHhcCCCCCEEEccCCc----cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 45678899988 66666665533 9999999999998 444443 8999999999999999988764 89999999
Q ss_pred eeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCC-C
Q 037759 215 YLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALH-P 292 (479)
Q Consensus 215 ~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~-~ 292 (479)
+|++++|.+..++ .+ +.+++|++|++++|.+..+ ..+..+++|++|+++ +|.... +.+..++.|+.+++++ .
T Consensus 116 ~L~L~~n~i~~~~-~l-~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~---~N~l~~~~~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GL-VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE---DNQISDIVPLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCCG-GG-GGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC---SSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCCh-hh-cCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEcc---CCccccchhhcCCCccCEEECCCCc
Confidence 9999999999985 56 8999999999999999888 469999999999999 876544 2344455555555543 1
Q ss_pred CCChhhhcCCCCCCCeEEEEeC
Q 037759 293 CCCPEDILGRLPNLQNIQIWGD 314 (479)
Q Consensus 293 ~~~~~~~l~~l~~L~~L~l~~~ 314 (479)
-..+.. +..+++|+.|+++++
T Consensus 190 i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 190 ISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCBCGG-GTTCTTCSEEEEEEE
T ss_pred CCCChh-hccCCCCCEEECcCC
Confidence 122233 455555555555543
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.5e-13 Score=128.18 Aligned_cols=147 Identities=19% Similarity=0.186 Sum_probs=127.9
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhccccc
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~ 212 (479)
...++.+.+. ++....++. .+ +++|+.|.+.+|. +....+..|..+++|++|++++|.++.+| ..+..+++
T Consensus 34 ~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 108 (251)
T 3m19_A 34 PADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYNQ----LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108 (251)
T ss_dssp CTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCCEEEcc-CCCcCccCHhHhcCcccCCEEECCCCc----CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCC
Confidence 4678999999 665555544 45 8999999999998 55677778999999999999999999876 55789999
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeee
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFIS 288 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~ 288 (479)
|++|++++|.++.+|...|+++++|++|++++|.+..+|. .++.+++|++|+++ +|.... | .+..++.|+.++
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~---~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS---TNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---SSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC---CCcCCccCHHHHhCCCCCCEEE
Confidence 9999999999999998876899999999999999999987 58999999999999 998777 4 677899999999
Q ss_pred cCC
Q 037759 289 ALH 291 (479)
Q Consensus 289 ~~~ 291 (479)
+.+
T Consensus 186 l~~ 188 (251)
T 3m19_A 186 LFG 188 (251)
T ss_dssp CCS
T ss_pred eeC
Confidence 886
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=125.45 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcch-hHHHhCcCCceeEEEecCCcCccCch-hhcccccCCeeecC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNY-CEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVFLLRYLNLN 219 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~L~ 219 (479)
.+.+. ++....+|..+.+.++.|.+.+|. +..+ ....|..+++|++|++++|.++.++. .+.++++|++|+++
T Consensus 15 ~l~~s-~n~l~~iP~~~~~~~~~L~L~~N~----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCS-NQKLNKIPEHIPQYTAELRLNNNE----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECC-SSCCSSCCSCCCTTCSEEECCSSC----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeC-CCCcccCccCCCCCCCEEEcCCCc----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 56666 666666777777778899998887 4444 23457889999999999999887754 78889999999999
Q ss_pred CCCCccCChhHHhcCcCCcEEecCCCccccc-chhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhh
Q 037759 220 IPSLKSLPSSLLNSLLNLYTLDMPFSYIDHT-ADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPED 298 (479)
Q Consensus 220 ~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~ 298 (479)
+|.++.+|...|+++++|++|++++|.+..+ |..+..+++|++|+++ +|.... ..+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~---~N~l~~------------------~~~~~ 148 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY---DNQITT------------------VAPGA 148 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT---TSCCCC------------------BCTTT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC---CCcCCE------------------ECHHH
Confidence 9999988887668899999999999988887 4668889999999998 765433 11223
Q ss_pred hcCCCCCCCeEEEEeCC
Q 037759 299 ILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 299 ~l~~l~~L~~L~l~~~~ 315 (479)
+..+++|+.|++++|.
T Consensus 149 -~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 149 -FDTLHSLSTLNLLANP 164 (220)
T ss_dssp -TTTCTTCCEEECCSCC
T ss_pred -hcCCCCCCEEEecCcC
Confidence 5666677777776443
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=1.6e-13 Score=134.54 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=112.7
Q ss_pred CceeEEEecCCcCccCch-hhcccccCCeeecCCCCC-ccCChhHHhcCcCCcE-EecCCCcccccc-hhhhcCccCcEE
Q 037759 188 KFLRVLDLGSLVLIRYPS-EIEYVFLLRYLNLNIPSL-KSLPSSLLNSLLNLYT-LDMPFSYIDHTA-DEFWKMSKLRYL 263 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~L~~~~l-~~lp~~i~~~l~~L~~-L~l~~~~l~~lp-~~~~~L~~L~~L 263 (479)
+++++|+|++|+++.+|. .|.++++|++|+|++|.+ +.+|...|.++++++. +.+..|++..+| ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345555666665555553 355555666666655554 3345444455555543 333334555553 234555555555
Q ss_pred EeccCCCCCCCC-CCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHH-HHHHhccC-CCccEEEeecC
Q 037759 264 NFGSITLSAHPG-KYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSL-LSKILYRL-SCLESLKLAKE 340 (479)
Q Consensus 264 ~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l-~~L~~L~l~~~ 340 (479)
+++ +|.... | ... +....++..|++.++. .... ....+..+ ..++.|+++++
T Consensus 110 ~l~---~n~l~~~~-------------------~~~-~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 110 LIS---NTGIKHLP-------------------DVH-KIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEE---EECCSSCC-------------------CCT-TCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECCSS
T ss_pred ccc---ccccccCC-------------------chh-hcccchhhhhhhcccc--ccccccccchhhcchhhhhhccccc
Confidence 555 433222 1 001 2223344555555322 1111 11122222 24555665542
Q ss_pred CCCCCccEEEeecccccCcceEEEEec-ccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEcCCCCC
Q 037759 341 SKIPRRSNIILAKYQFPPSLTHLSFLN-IELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMGIRAMP 419 (479)
Q Consensus 341 ~~lp~L~~L~l~~~~lp~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 419 (479)
.+ +.+.-..... .+|+.|.+.+ +.++..+...++.+ ++|+.|+++++ +++.+| .+.+.
T Consensus 165 ~i----~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l-------------~~L~~LdLs~N-~l~~lp--~~~~~ 223 (350)
T 4ay9_X 165 GI----QEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGA-------------SGPVILDISRT-RIHSLP--SYGLE 223 (350)
T ss_dssp CC----CEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTE-------------ECCSEEECTTS-CCCCCC--SSSCT
T ss_pred cc----cCCChhhccc-cchhHHhhccCCcccCCCHHHhccC-------------cccchhhcCCC-CcCccC--hhhhc
Confidence 11 1110011122 4566666654 44433333334444 45566666553 355554 35689
Q ss_pred CccEeEEecCCCCCCCcccccCCCCCCEEEeeC
Q 037759 420 KLECSILNPCAHLKMIPEQLWCLKSLNKLELWW 452 (479)
Q Consensus 420 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 452 (479)
+|+.|.+.+|++++.+| .+..+++|+.+++.+
T Consensus 224 ~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 99999999999999999 588999999999964
No 102
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.44 E-value=1.6e-14 Score=150.13 Aligned_cols=95 Identities=22% Similarity=0.207 Sum_probs=81.3
Q ss_pred hhhHHHHHHHhccCCchhhHHHHh-----------hhcccCCCceechhhHHHHHHhc--CCCCC-----ChHHHHHHHH
Q 037759 21 LDEPRGLQVVAYCMLPFYLKLCCL-----------YLSVFLVHFEISTKQSYQLWIAE--GFIPN-----NNEATAERYL 82 (479)
Q Consensus 21 ~~~i~~~L~lSY~~L~~~~K~cfl-----------~~a~fp~~~~i~~~~Li~~w~a~--g~i~~-----~~~~~~~~~~ 82 (479)
.++|+++|++||++||.++|.||+ |||+||+++.|+ ++.|+|+ ||+.. +++++++ |+
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 457888999999999999999999 999999999999 8999999 99975 5888888 99
Q ss_pred HHHHhCCceeeeecCCCCCeeEEEeChhHHHHHHHhhhhCC
Q 037759 83 EQLINGGFVDAGKRGVRGRINTCSIPGHCSPALLTVAFEGE 123 (479)
Q Consensus 83 ~~L~~~~ll~~~~~~~~g~~~~~~mHdli~~l~~~~~~~~~ 123 (479)
++|+++||++....+ ....|+|||++|++|+.++.+++
T Consensus 435 ~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 435 KRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 999999999987643 34679999999999998887654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=6.8e-14 Score=146.47 Aligned_cols=171 Identities=20% Similarity=0.185 Sum_probs=125.5
Q ss_pred hCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEE
Q 037759 184 YKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYL 263 (479)
Q Consensus 184 ~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 263 (479)
+..+++|+.|++++|.+..+| .+..+++|+.|+|++|.+..+|+ + +++++|+.|++++|.+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 356677888888888887776 57788888888888888887776 5 78888888888888777776 47788888888
Q ss_pred EeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC
Q 037759 264 NFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI 343 (479)
Q Consensus 264 ~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 343 (479)
+++ +|... .+.. +..+++|+.|++++|. .... ..+..+++|+.|+++++.+-
T Consensus 115 ~Ls---~N~l~--------------------~l~~-l~~l~~L~~L~Ls~N~--l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 115 SLE---HNGIS--------------------DING-LVHLPQLESLYLGNNK--ITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECT---TSCCC--------------------CCGG-GGGCTTCSEEECCSSC--CCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred Eec---CCCCC--------------------CCcc-ccCCCccCEEECCCCc--cCCc--hhhcccCCCCEEECcCCcCC
Confidence 888 55321 1344 7788999999999776 4332 56788999999999873321
Q ss_pred CCccEEEeecccccCcceEEEEecccCCCCCccccccCccCceEEeccCCC
Q 037759 344 PRRSNIILAKYQFPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGF 394 (479)
Q Consensus 344 p~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~ 394 (479)
.+. .+..+ ++|+.|+|++|.+.. ++.+..+++|+.|+++.+.+
T Consensus 167 -~~~----~l~~l-~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 167 -DIV----PLAGL-TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -CCG----GGTTC-TTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEE
T ss_pred -Cch----hhccC-CCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcC
Confidence 000 12344 899999999998765 36778888888888776543
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=5.3e-13 Score=119.55 Aligned_cols=147 Identities=13% Similarity=0.194 Sum_probs=114.4
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc-CchhhcccccC
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR-YPSEIEYVFLL 213 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~L~~L 213 (479)
....++++.+. ++....++.-. +++|+.|.+.+|.. ... ..+..+++|++|++++|.++. .|..++.+++|
T Consensus 42 ~l~~L~~L~l~-~n~i~~l~~l~~l~~L~~L~l~~n~~----~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLA-NINVTDLTGIEYAHNIKDLTINNIHA----TNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEE-SSCCSCCTTGGGCTTCSEEEEESCCC----SCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEecc-CCCccChHHHhcCCCCCEEEccCCCC----Ccc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 45678899998 66666667333 89999999999863 322 368889999999999999884 67888999999
Q ss_pred CeeecCCCCCcc-CChhHHhcCcCCcEEecCCCc-ccccchhhhcCccCcEEEeccCCCCCCCCCCCCCCcccCeeecCC
Q 037759 214 RYLNLNIPSLKS-LPSSLLNSLLNLYTLDMPFSY-IDHTADEFWKMSKLRYLNFGSITLSAHPGKYCGSLENLDFISALH 291 (479)
Q Consensus 214 ~~L~L~~~~l~~-lp~~i~~~l~~L~~L~l~~~~-l~~lp~~~~~L~~L~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~ 291 (479)
++|++++|.++. .|..+ +++++|++|++++|. +..+| .+..+++|++|+++ +|....
T Consensus 115 ~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~---~n~i~~---------------- 173 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ---FDGVHD---------------- 173 (197)
T ss_dssp CEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT---TBCCCC----------------
T ss_pred CEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC---CCCCcC----------------
Confidence 999999999885 55666 999999999999996 88887 58899999999999 664321
Q ss_pred CCCChhhhcCCCCCCCeEEEEeCC
Q 037759 292 PCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 292 ~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+.. +..+++|+.|+++++.
T Consensus 174 ----~~~-l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 174 ----YRG-IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ----CTT-GGGCSSCCEEEECBC-
T ss_pred ----hHH-hccCCCCCEEEeeCcc
Confidence 113 6677788888887654
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=5.1e-13 Score=116.36 Aligned_cols=128 Identities=20% Similarity=0.121 Sum_probs=107.8
Q ss_pred CCCeEEEEEEcCCCCc--cccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc-Cchhhcccc
Q 037759 137 WENVKRFTVHGNLNDF--EFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR-YPSEIEYVF 211 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~--~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~L~ 211 (479)
+..++++.+. ++... .+|..+ +++|+.|.+.+|.. ... ..+..+++|++|++++|.+.. +|..+.+++
T Consensus 23 ~~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~~L~l~~n~l----~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLD-NCKSNDGKIEGLTAEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECC-SCBCBTTBCSSCCGGGGGCCEEEEESSCC----CCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECC-CCCCChhhHHHHHHhCCCCCEEeCcCCCC----CCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 4678899998 55555 677776 89999999999984 333 678889999999999999986 777778899
Q ss_pred cCCeeecCCCCCccCC--hhHHhcCcCCcEEecCCCcccccch----hhhcCccCcEEEeccCCCCCCCC
Q 037759 212 LLRYLNLNIPSLKSLP--SSLLNSLLNLYTLDMPFSYIDHTAD----EFWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp--~~i~~~l~~L~~L~l~~~~l~~lp~----~~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
+|++|++++|.++.+| ..+ +.+++|++|++++|.+..+|. .+..+++|++|+++ +|....
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~---~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY---DREDQE 161 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE---ETTSCB
T ss_pred CCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC---CCChhh
Confidence 9999999999999887 566 899999999999998888886 68899999999999 876655
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=2.6e-13 Score=133.62 Aligned_cols=166 Identities=18% Similarity=0.091 Sum_probs=129.8
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhC-cCCceeEEEecCCcCccCc-hhhcccccCCeeec
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYK-MFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNL 218 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L 218 (479)
+.+... +.....+|..+.+.++.|.+.+|. +..+.+..|. .+++|++|+|++|.++.++ ..|.++++|++|+|
T Consensus 21 ~~l~c~-~~~l~~iP~~~~~~l~~L~Ls~N~----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCS-KQQLPNVPQSLPSYTALLDLSHNN----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECC-SSCCSSCCSSCCTTCSEEECCSSC----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeC-CCCcCccCccCCCCCCEEECCCCC----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 356666 666777888777889999999998 6666677777 9999999999999999776 56999999999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccc-hhhhcCccCcEEEeccCCCCCCCC-C-CC----CCCcccCeeecCC
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFWKMSKLRYLNFGSITLSAHPG-K-YC----GSLENLDFISALH 291 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~-p-~i----~~L~~L~~l~~~~ 291 (479)
++|.++.+|...|.++++|++|++++|.+..++ ..+..+++|++|+++ +|.... | .+ ..+..|+.+++++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~---~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS---QNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC---SSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC---CCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 999999998876699999999999999988884 568999999999999 887777 6 43 3577777777765
Q ss_pred CC---CChhhhcCCCCC--CCeEEEEeCC
Q 037759 292 PC---CCPEDILGRLPN--LQNIQIWGDL 315 (479)
Q Consensus 292 ~~---~~~~~~l~~l~~--L~~L~l~~~~ 315 (479)
+. ..... +..++. ++.|++.+|.
T Consensus 173 N~l~~l~~~~-~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 173 NKLKKLPLTD-LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCCCCCHHH-HHHSCHHHHTTEECCSSC
T ss_pred CCCCccCHHH-hhhccHhhcceEEecCCC
Confidence 21 12223 455555 3667777544
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=2.6e-12 Score=114.97 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=108.3
Q ss_pred ccCCCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCc-cCchhhcccc
Q 037759 134 VKLWENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-RYPSEIEYVF 211 (479)
Q Consensus 134 ~~~~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~l~~L~ 211 (479)
....+.++.+.+. ++....++.-. +++|+.|.+.+|. +....+..+..+++|++|++++|.++ ..|..++.++
T Consensus 62 l~~l~~L~~L~l~-~n~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 62 IEYAHNIKDLTIN-NIHATNYNPISGLSNLERLRIMGKD----VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136 (197)
T ss_dssp GGGCTTCSEEEEE-SCCCSCCGGGTTCTTCCEEEEECTT----CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred HhcCCCCCEEEcc-CCCCCcchhhhcCCCCCEEEeECCc----cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence 4456789999999 66665444333 9999999999988 45545667899999999999999998 4688899999
Q ss_pred cCCeeecCCCC-CccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCC
Q 037759 212 LLRYLNLNIPS-LKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSA 272 (479)
Q Consensus 212 ~L~~L~L~~~~-l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~ 272 (479)
+|++|++++|. +..+| .+ .++++|++|++++|.+..++ .+..+++|++|+++ ++.
T Consensus 137 ~L~~L~L~~n~~i~~~~-~l-~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~---~N~ 192 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIM-PL-KTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF---SQT 192 (197)
T ss_dssp SCCEEECCSCTBCCCCG-GG-GGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC---BC-
T ss_pred CCCEEEccCCCCccccH-hh-cCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee---Ccc
Confidence 99999999998 88887 56 99999999999999999988 69999999999999 765
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=9.7e-13 Score=126.61 Aligned_cols=179 Identities=13% Similarity=0.049 Sum_probs=89.2
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCcc---CChhH-Hhc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKS---LPSSL-LNS 233 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~---lp~~i-~~~ 233 (479)
+++|++|.+.+|.............+..+++|++|++++|.+..+| ..++.+++|++|++++|.+.. ++... +++
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 5556666666555321011112233445566666666666655443 445556666666666665432 21111 145
Q ss_pred CcCCcEEecCCCcccccchh----hhcCccCcEEEeccCCCCCCCC--C-CCCCCcccCeeecCCCCCChhhhcCCCCCC
Q 037759 234 LLNLYTLDMPFSYIDHTADE----FWKMSKLRYLNFGSITLSAHPG--K-YCGSLENLDFISALHPCCCPEDILGRLPNL 306 (479)
Q Consensus 234 l~~L~~L~l~~~~l~~lp~~----~~~L~~L~~L~l~~~~~~~~~~--p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L 306 (479)
+++|++|++++|.++.+|.. ++.+++|++|+++ +|.... | .++. +..+++|
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls---~N~l~~~~p~~~~~-------------------~~~~~~L 253 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS---HNSLRATVNPSAPR-------------------CMWSSAL 253 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT---TSCCCCCCCSCCSS-------------------CCCCTTC
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC---CCCCCccchhhHHh-------------------ccCcCcC
Confidence 55666666666655544432 3455666666666 544333 2 2221 1122466
Q ss_pred CeEEEEeCCccchHHHHHHhccCCCccEEEeecCCC--CCCccEEEeecccccCcceEEEEecccCCC
Q 037759 307 QNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESK--IPRRSNIILAKYQFPPSLTHLSFLNIELMD 372 (479)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--lp~L~~L~l~~~~lp~~L~~L~l~~~~l~~ 372 (479)
+.|++++|. .. .++..+ .++|++|+++++.+ +|.+. .+ ++|+.|++++|.+++
T Consensus 254 ~~L~Ls~N~--l~-~lp~~~--~~~L~~L~Ls~N~l~~~~~~~-------~l-~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 254 NSLNLSFAG--LE-QVPKGL--PAKLRVLDLSSNRLNRAPQPD-------EL-PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCEECCSSC--CC-SCCSCC--CSCCSCEECCSCCCCSCCCTT-------SC-CCCSCEECSSTTTSC
T ss_pred CEEECCCCC--CC-chhhhh--cCCCCEEECCCCcCCCCchhh-------hC-CCccEEECcCCCCCC
Confidence 666666544 22 222222 25666666665222 12222 33 788888888888654
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=8.5e-13 Score=123.87 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=75.7
Q ss_pred hCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEE
Q 037759 184 YKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYL 263 (479)
Q Consensus 184 ~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 263 (479)
+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|+ + +++++|++|++++|.+..+|. +.. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNG-IPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTT-CCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCc-ccc-CcccEE
Confidence 444555555555555555554 45555555555555555555554 3 555555555555555555543 222 555555
Q ss_pred EeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCC
Q 037759 264 NFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKI 343 (479)
Q Consensus 264 ~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 343 (479)
+++ +|.... +.. ++.+++|+.|++++|. .... ..+..+++|+.|+++++.+-
T Consensus 112 ~L~---~N~l~~--------------------~~~-l~~l~~L~~L~Ls~N~--i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 112 FLD---NNELRD--------------------TDS-LIHLKNLEILSIRNNK--LKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECC---SSCCSB--------------------SGG-GTTCTTCCEEECTTSC--CCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred Ecc---CCccCC--------------------Chh-hcCcccccEEECCCCc--CCCC--hHHccCCCCCEEECCCCcCc
Confidence 555 443221 122 4445555555555443 2111 13445555555555542111
Q ss_pred CCccEEEeecccccCcceEEEEecccCCCCC
Q 037759 344 PRRSNIILAKYQFPPSLTHLSFLNIELMDDP 374 (479)
Q Consensus 344 p~L~~L~l~~~~lp~~L~~L~l~~~~l~~~~ 374 (479)
.+. .+..+ ++|+.|++++|.+...+
T Consensus 164 -~~~----~l~~l-~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 -NTG----GLTRL-KKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -BCT----TSTTC-CCCCEEEEEEEEEECCC
T ss_pred -chH----HhccC-CCCCEEeCCCCcccCCc
Confidence 000 22334 77777777777765443
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=4.3e-13 Score=132.08 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCCccEEEEecCCCCCCCcchhH----HHhCcCC-ceeEEEecCCcCccC-chhhccc-----ccCCeeecCCCCCccCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCE----KIYKMFK-FLRVLDLGSLVLIRY-PSEIEYV-----FLLRYLNLNIPSLKSLP 227 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~l~~l-p~~l~~L-----~~L~~L~L~~~~l~~lp 227 (479)
.++|+.|++.+|.. ..... ..|..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++..+
T Consensus 21 ~~~L~~L~Ls~n~l----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp CTTCCEEECTTSCG----GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCCceEEEccCCCC----ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 45588888888873 33333 6777888 899999999888744 5566665 88999999998888655
Q ss_pred hh-H---HhcC-cCCcEEecCCCcccccchh-----hhcC-ccCcEEEeccCCCCCCC
Q 037759 228 SS-L---LNSL-LNLYTLDMPFSYIDHTADE-----FWKM-SKLRYLNFGSITLSAHP 274 (479)
Q Consensus 228 ~~-i---~~~l-~~L~~L~l~~~~l~~lp~~-----~~~L-~~L~~L~l~~~~~~~~~ 274 (479)
.. + +..+ ++|++|++++|.+...+.. +..+ ++|++|+++ +|...
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls---~N~l~ 151 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR---GNDLG 151 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT---TSCGG
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc---CCcCC
Confidence 44 2 1444 7899999998887776532 3332 588899888 77544
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=3e-12 Score=132.65 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=54.5
Q ss_pred ceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEec
Q 037759 189 FLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFG 266 (479)
Q Consensus 189 ~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 266 (479)
+|++|++++|.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.+..+|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 78888888888887877664 67888888888888888 346788888888888888877 554 78888888
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=1.2e-12 Score=119.33 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=112.2
Q ss_pred CCCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hccccc
Q 037759 137 WENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~ 212 (479)
...++.|.+. ++.+..++. .+ +++|+.|.+.+|. +..+.+..|..+++|++|+|++|.++.+|.. +..+++
T Consensus 31 ~~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 31 PETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNNQ----ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CTTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSSC----CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCCc----CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 4678999999 666666665 44 8999999999998 6667778899999999999999999998865 688999
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCC
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSA 272 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~ 272 (479)
|++|++++|.++.+++..|.++++|++|++++|.+..++.. +..+++|++|+++ +|.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~---~N~ 163 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA---QNP 163 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC---SSC
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC---CCC
Confidence 99999999999998766559999999999999999999864 8899999999999 764
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=2.9e-12 Score=120.26 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=66.1
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.++.. ..+. .+..+++|++|++++|.++.+|. +.++++|++|++++|.++.+|... . ++|+
T Consensus 40 l~~L~~L~l~~n~i----~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~ 109 (263)
T 1xeu_A 40 LSGVQNFNGDNSNI----QSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP--S-ACLS 109 (263)
T ss_dssp HTTCSEEECTTSCC----CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC--C-SSCC
T ss_pred cCcCcEEECcCCCc----ccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc--c-Cccc
Confidence 45555555555442 2221 34455555555555555555444 555555555555555555554322 2 5555
Q ss_pred EEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCC-CCCChhhhcCCCCCCCeEEEEeCC
Q 037759 239 TLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALH-PCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 239 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+|++++|.+..+| .+..+++|++|+++ +|.... +.++.++.|+.+++.+ .-..... +..+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls---~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIR---NNKLKSIVMLGFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECT---TSCCCBCGGGGGCTTCCEEECTTSCCCBCTT-STTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCCh-hhcCcccccEEECC---CCcCCCChHHccCCCCCEEECCCCcCcchHH-hccCCCCCEEeCCCCc
Confidence 5555555555543 25555555555555 443222 1222222222222222 0011133 5666667777766543
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=2e-12 Score=118.72 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=112.6
Q ss_pred CCCCeEEEEEEcCCCCccc-cccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hcccc
Q 037759 136 LWENVKRFTVHGNLNDFEF-LDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVF 211 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~ 211 (479)
....++.|.+. ++.+..+ +..+ +++|+.|.+.+|. +..+.+..|..+++|++|+|++|.++.+|.. +..++
T Consensus 38 ~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N~----l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 38 IPTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSNQ----LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp CCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCCC----CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 34779999999 6665555 5555 9999999999998 5566677889999999999999999988754 78999
Q ss_pred cCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCC
Q 037759 212 LLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAH 273 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~ 273 (479)
+|++|++++|.++.+|..+ .++++|++|++++|.+..+|. .+..+++|++|+++ +|..
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~---~N~~ 171 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF---GNPW 171 (229)
T ss_dssp TCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT---TSCB
T ss_pred hhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee---CCCc
Confidence 9999999999999999999 999999999999999999985 48899999999999 7653
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=2.3e-12 Score=116.31 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=111.9
Q ss_pred CCCeEEEEEEcCCCCcccccc-c--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hccccc
Q 037759 137 WENVKRFTVHGNLNDFEFLDH-F--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFL 212 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~ 212 (479)
...++++.+. ++....++.. + +++|+.|.+.++. +..+.+..|..+++|++|++++|.++.+|.. +.++++
T Consensus 27 ~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGNK----LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCCc----cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 4578999999 6666666654 3 8999999999997 5566677789999999999999999988754 789999
Q ss_pred CCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCC
Q 037759 213 LRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAH 273 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~ 273 (479)
|++|++++|.++.+|+..|.++++|++|++++|.+..+|.. +..+++|++|+++ +|..
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~---~N~~ 160 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH---DNPW 160 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC---SCCB
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec---CCCe
Confidence 99999999999999988669999999999999999999876 7899999999999 7653
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=8.1e-13 Score=112.59 Aligned_cols=122 Identities=22% Similarity=0.169 Sum_probs=88.7
Q ss_pred CCCeEEEEEEcCCCCc--cccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCcc-Cchhhcccc
Q 037759 137 WENVKRFTVHGNLNDF--EFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIR-YPSEIEYVF 211 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~--~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~L~ 211 (479)
.+.++++.+. ++... .+|..+ +++|+.|.+.+|.. ... ..+..+++|++|++++|.++. +|..+..++
T Consensus 16 ~~~l~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l----~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLD-NSRSNEGKLEGLTDEFEELEFLSTINVGL----TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECT-TCBCBTTBCCSCCTTCTTCCEEECTTSCC----CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEcc-CCcCChhHHHHHHhhcCCCcEEECcCCCC----CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3567777777 44444 566665 78888888887763 333 567778888888888888776 677677788
Q ss_pred cCCeeecCCCCCccCC--hhHHhcCcCCcEEecCCCcccccch----hhhcCccCcEEEec
Q 037759 212 LLRYLNLNIPSLKSLP--SSLLNSLLNLYTLDMPFSYIDHTAD----EFWKMSKLRYLNFG 266 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp--~~i~~~l~~L~~L~l~~~~l~~lp~----~~~~L~~L~~L~l~ 266 (479)
+|++|++++|.++.+| ..+ +++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888888877765 555 788888888888887777765 57778888887765
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3.2e-12 Score=137.06 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=93.3
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCC
Q 037759 137 WENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLR 214 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~ 214 (479)
...++++.+. .+.....+... ..+|+.+.+.+...........+..|..++.|++|+|++|.+..+|..+.++++|+
T Consensus 172 ~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 3557777776 44444444443 45555554443321110122557788999999999999999999998889999999
Q ss_pred eeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCC
Q 037759 215 YLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALH 291 (479)
Q Consensus 215 ~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~ 291 (479)
+|+|++|.++.+|..+ +++++|++|+|++|.+..+|..++.|++|++|+++ +|.... | .++++..|+.+++++
T Consensus 251 ~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~---~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF---DNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC---SSCCCCCCSSTTSCTTCCCEECTT
T ss_pred EEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC---CCCCCccChhhhcCCCccEEeCCC
Confidence 9999999999999888 99999999999999999999999999999999999 887767 8 888888888888876
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=117.04 Aligned_cols=128 Identities=13% Similarity=0.006 Sum_probs=109.4
Q ss_pred CCCeEEEEEEcCCCCcccc-cc-c--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhcccc
Q 037759 137 WENVKRFTVHGNLNDFEFL-DH-F--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVF 211 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~-~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~ 211 (479)
...++.+.+. ++....++ .. + +++|+.|.+.+|. +..+.+..|..+++|++|++++|.++.+|. .+..++
T Consensus 31 ~~~~~~L~L~-~N~l~~~~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 31 PQYTAELRLN-NNEFTVLEATGIFKKLPQLRKINFSNNK----ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp CTTCSEEECC-SSCCCEECCCCCGGGCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCCEEEcC-CCcCCccCchhhhccCCCCCEEECCCCc----CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 3456789998 66666663 33 4 9999999999998 666777789999999999999999997764 589999
Q ss_pred cCCeeecCCCCCccCChhHHhcCcCCcEEecCCCccccc-chhhhcCccCcEEEeccCCCCC
Q 037759 212 LLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHT-ADEFWKMSKLRYLNFGSITLSA 272 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~ 272 (479)
+|++|++++|.++.+++..|.++++|++|++++|.+..+ |..+..+++|++|+++ +|.
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~---~N~ 164 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL---ANP 164 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC---SCC
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec---CcC
Confidence 999999999999988655449999999999999999988 6779999999999999 765
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.9e-12 Score=113.46 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=90.6
Q ss_pred EEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCC
Q 037759 142 RFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNI 220 (479)
Q Consensus 142 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~ 220 (479)
.+.+. ++....+|..+.++++.|.+.+|.. ..++ ..|..+++|++|++++|.++.++ ..|.++++|++|++++
T Consensus 14 ~l~~~-~~~l~~ip~~~~~~l~~L~L~~n~i----~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCS-NKGLKVLPKGIPRDVTELYLDGNQF----TLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEECT-TSCCSSCCSCCCTTCCEEECCSSCC----CSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEcC-CCCCCcCCCCCCCCCCEEECCCCcC----chhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 44555 5556667766677888888888873 3333 57788888888888888888765 4578888888888888
Q ss_pred CCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEec
Q 037759 221 PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFG 266 (479)
Q Consensus 221 ~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 266 (479)
|.++.+|+..|+++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 888888776558888888888888888888764 7778888888888
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=3.8e-12 Score=111.83 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=102.4
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hcccccCCeeecC
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFLLRYLNLN 219 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~L~ 219 (479)
+.+.+. ++....+|..+.++++.|.+.++. +..+.+..|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 10 ~~l~~~-~~~l~~~p~~~~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCN-SKGLTSVPTGIPSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECC-SSCCSSCCTTCCTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEec-CCCCccCCCCCCCCCcEEEeCCCc----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 345555 555666776667899999999887 4556667788899999999999999887654 6889999999999
Q ss_pred CCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCCC
Q 037759 220 IPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAHP 274 (479)
Q Consensus 220 ~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~ 274 (479)
+|.++.+|...|+++++|++|++++|.+..+|.. +..+++|++|+++ +|...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~---~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH---TNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC---SSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec---CCCee
Confidence 9999988887668899999999999988888876 5789999999999 76544
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=1.8e-12 Score=115.50 Aligned_cols=124 Identities=17% Similarity=0.147 Sum_probs=96.8
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHH-HhCcCCceeEEEecCCcCccC-chhhcccccCCeeec
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEK-IYKMFKFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNL 218 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L 218 (479)
+.+.+. ++....+|..+.++++.|.+.++. +..+.+. .|..+++|++|++++|.++.+ |..+.++++|++|++
T Consensus 11 ~~l~~s-~~~l~~ip~~~~~~l~~L~l~~n~----i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCT-GRGLKEIPRDIPLHTTELLLNDNE----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECT-TSCCSSCCSCCCTTCSEEECCSCC----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcC-CCCcCcCccCCCCCCCEEECCCCc----CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 456666 566666777776688888888887 3444432 478888899999999988866 677888889999999
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCccccc-chhhhcCccCcEEEeccCCCCC
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHT-ADEFWKMSKLRYLNFGSITLSA 272 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~ 272 (479)
++|.++.++...|+++++|++|++++|.+..+ |..+..+++|++|+++ +|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~---~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA---SNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT---TCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC---CCC
Confidence 99988888776548888999999998888776 5668888889999888 664
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=2.8e-12 Score=111.59 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=75.9
Q ss_pred CCCccEEEEecCCCCCCCc-chhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCcc-CChhHHhcCcC
Q 037759 159 DSFLHSLLHLTLGSHYLDS-NYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKS-LPSSLLNSLLN 236 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~-lp~~i~~~l~~ 236 (479)
.++++.|.+.+|.. . ...+..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+ +++++
T Consensus 23 ~~~L~~L~l~~n~l----~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKS----NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBC----BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTT
T ss_pred cccCCEEECCCCCC----ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCC
Confidence 56788888877763 2 22334467778888888888877766 667777888888888888776 55444 67888
Q ss_pred CcEEecCCCcccccc--hhhhcCccCcEEEeccCCCCC
Q 037759 237 LYTLDMPFSYIDHTA--DEFWKMSKLRYLNFGSITLSA 272 (479)
Q Consensus 237 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~ 272 (479)
|++|++++|.+..+| ..+..+++|++|+++ +|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~---~N~ 131 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLF---NCE 131 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECC---SSG
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEee---CCc
Confidence 888888888777776 567778888888887 654
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.5e-12 Score=112.94 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=84.4
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhh-ccccc
Q 037759 136 LWENVKRFTVHGNLNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEI-EYVFL 212 (479)
Q Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l-~~L~~ 212 (479)
....++.+.+. ++....++... .++|+.|.+.+|.. ..+ ..|..+++|++|++++|.++.+|..+ ..+++
T Consensus 17 ~~~~L~~L~l~-~n~l~~i~~~~~~~~~L~~L~Ls~N~l----~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEI----RKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CTTSCEEEECT-TSCCCSCCCGGGGTTCCSEEECCSSCC----CEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred CcCCceEEEee-CCCCchhHHhhhcCCCCCEEECCCCCC----Ccc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35667777777 55555554433 34777777777763 333 45677777777777777777666444 67777
Q ss_pred CCeeecCCCCCccCCh--hHHhcCcCCcEEecCCCcccccchh----hhcCccCcEEEec
Q 037759 213 LRYLNLNIPSLKSLPS--SLLNSLLNLYTLDMPFSYIDHTADE----FWKMSKLRYLNFG 266 (479)
Q Consensus 213 L~~L~L~~~~l~~lp~--~i~~~l~~L~~L~l~~~~l~~lp~~----~~~L~~L~~L~l~ 266 (479)
|++|++++|.+..+|. .+ +.+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 90 L~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred CCEEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 7777777777777775 55 7777777777777777777764 6777777777777
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.4e-12 Score=109.69 Aligned_cols=78 Identities=18% Similarity=0.074 Sum_probs=48.9
Q ss_pred CCceeEEEecCCcCc--cCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccc-cchhhhcCccCcEE
Q 037759 187 FKFLRVLDLGSLVLI--RYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDH-TADEFWKMSKLRYL 263 (479)
Q Consensus 187 l~~L~~L~L~~~~l~--~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L 263 (479)
.++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+ +++++|++|++++|.+.. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 355666666666665 5666666666666666666666655 344 666666666666666555 55555556666666
Q ss_pred Eec
Q 037759 264 NFG 266 (479)
Q Consensus 264 ~l~ 266 (479)
+++
T Consensus 94 ~ls 96 (149)
T 2je0_A 94 NLS 96 (149)
T ss_dssp ECT
T ss_pred ECC
Confidence 666
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=2.7e-12 Score=112.71 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=101.5
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCc
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLY 238 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~ 238 (479)
+++|+.|.+.+|.. ..+ +......++|++|++++|.++.+ ..+..+++|++|++++|.++.+|+.+|+.+++|+
T Consensus 18 ~~~L~~L~l~~n~l----~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKI----PVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCC----CSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCC----chh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 78899999999874 333 22333344999999999999877 6788999999999999999999887778999999
Q ss_pred EEecCCCcccccch--hhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCC
Q 037759 239 TLDMPFSYIDHTAD--EFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 239 ~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+|++++|.+..+|. .+..+++|++|+++ +|.... |. ..... +..+++|+.|+++++.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~---~N~i~~~~~----------------~~~~~-~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCIL---RNPVTNKKH----------------YRLYV-IYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECC---SSGGGGSTT----------------HHHHH-HHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEec---CCCCCCcHh----------------HHHHH-HHHCCccceeCCCcCC
Confidence 99999999998887 78899999999999 765332 20 00112 5567788888887654
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=3.1e-12 Score=137.09 Aligned_cols=113 Identities=26% Similarity=0.253 Sum_probs=96.7
Q ss_pred ccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHH
Q 037759 154 FLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLL 231 (479)
Q Consensus 154 ~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~ 231 (479)
.++.+ ++.|+.|.+.+|.. ..+... +..+++|++|+|++|.++.+|..|++|++|++|+|++|.++.+|..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l----~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~- 289 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI----FNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL- 289 (727)
T ss_dssp ------CCCCCCEEECTTSCC----SCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-
T ss_pred ChhhhccCCCCcEEECCCCCC----CCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-
Confidence 34445 88999999999884 334333 44899999999999999999999999999999999999999999998
Q ss_pred hcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC
Q 037759 232 NSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG 275 (479)
Q Consensus 232 ~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~ 275 (479)
++|++|++|+|++|.+..+|..+++|++|++|+++ +|....
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~---~N~l~~ 330 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE---GNPLEK 330 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT---TSCCCS
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC---CCccCC
Confidence 99999999999999999999889999999999999 888776
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=2.1e-11 Score=126.43 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=114.1
Q ss_pred CeEEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCeeec
Q 037759 139 NVKRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNL 218 (479)
Q Consensus 139 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L 218 (479)
+++.+.+. ++....+|..+.++|+.|.+.+|.. ..++ ..+++|++|++++|.++.+|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls-~n~L~~lp~~l~~~L~~L~Ls~N~l----~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLN-RLNLSSLPDNLPPQITVLEITQNAL----ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECC-SSCCSCCCSCCCTTCSEEECCSSCC----SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeC-CCCCCccCHhHcCCCCEEECcCCCC----cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 56677777 5555556666667788888877773 3332 456778888888888777776 555 7888888
Q ss_pred CCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeecCCCCCChh
Q 037759 219 NIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISALHPCCCPE 297 (479)
Q Consensus 219 ~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~ 297 (479)
++|.++.+|. .+++|++|++++|.+..+|. .+++|++|+++ +|.... |.
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls---~N~L~~lp~-------------------- 177 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVR---NNQLTFLPE-------------------- 177 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC---SSCCSCCCC--------------------
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECC---CCCCCCcch--------------------
Confidence 8888777775 46778888888887777776 56777888887 665433 22
Q ss_pred hhcCCCCCCCeEEEEeCCccchHHHHHHhcc-----CCCccEEEeecCCC--CCCccEEEeecccccCcceEEEEecccC
Q 037759 298 DILGRLPNLQNIQIWGDLIYYQSLLSKILYR-----LSCLESLKLAKESK--IPRRSNIILAKYQFPPSLTHLSFLNIEL 370 (479)
Q Consensus 298 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~--lp~L~~L~l~~~~lp~~L~~L~l~~~~l 370 (479)
+. ++|+.|++++|. .. .++. +.. .+.|+.|+++++.+ +|. .+..+ ++|+.|++++|.+
T Consensus 178 --l~--~~L~~L~Ls~N~--L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~------~l~~l-~~L~~L~L~~N~l 242 (571)
T 3cvr_A 178 --LP--ESLEALDVSTNL--LE-SLPA-VPVRNHHSEETEIFFRCRENRITHIPE------NILSL-DPTCTIILEDNPL 242 (571)
T ss_dssp --CC--TTCCEEECCSSC--CS-SCCC-CC--------CCEEEECCSSCCCCCCG------GGGGS-CTTEEEECCSSSC
T ss_pred --hh--CCCCEEECcCCC--CC-chhh-HHHhhhcccccceEEecCCCcceecCH------HHhcC-CCCCEEEeeCCcC
Confidence 11 344555554433 11 1111 111 11226666655222 121 23344 7888888888887
Q ss_pred CCCCccccccCc
Q 037759 371 MDDPMPALEKLA 382 (479)
Q Consensus 371 ~~~~~~~l~~l~ 382 (479)
+......++.++
T Consensus 243 ~~~~p~~l~~l~ 254 (571)
T 3cvr_A 243 SSRIRESLSQQT 254 (571)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHHhh
Confidence 655544444443
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=8.3e-12 Score=122.78 Aligned_cols=147 Identities=17% Similarity=0.060 Sum_probs=119.8
Q ss_pred CCCeEEEEEEcCCCCccccccc----CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCch-hhcccc
Q 037759 137 WENVKRFTVHGNLNDFEFLDHF----DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPS-EIEYVF 211 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~L~ 211 (479)
...++.|.+. ++.+..++... +++|+.|.+.+|. +..+.+..|..+++|++|+|++|.++.+|. .|..+.
T Consensus 38 ~~~l~~L~Ls-~N~l~~l~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 38 PSYTALLDLS-HNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CTTCSEEECC-SSCCCEECTTSSSSCCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCEEECC-CCCCCccChhhhhhcccccCEEECCCCc----CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 4557889999 66666666543 6899999999998 666777789999999999999999997764 689999
Q ss_pred cCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhh----hcCccCcEEEeccCCCCCCCC-C--CCCCCcc-
Q 037759 212 LLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEF----WKMSKLRYLNFGSITLSAHPG-K--YCGSLEN- 283 (479)
Q Consensus 212 ~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~----~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~- 283 (479)
+|++|+|++|.+..+++..|.++++|++|++++|.+..+|..+ ..+++|++|+++ +|.... | .+..+..
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~---~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS---SNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC---SSCCCCCCHHHHHHSCHH
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC---CCCCCccCHHHhhhccHh
Confidence 9999999999999886655599999999999999999999765 679999999999 887776 5 4545554
Q ss_pred -cCeeecCC
Q 037759 284 -LDFISALH 291 (479)
Q Consensus 284 -L~~l~~~~ 291 (479)
++.+++.+
T Consensus 190 ~l~~l~l~~ 198 (361)
T 2xot_A 190 VKNGLYLHN 198 (361)
T ss_dssp HHTTEECCS
T ss_pred hcceEEecC
Confidence 35566654
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=2.5e-11 Score=126.23 Aligned_cols=116 Identities=21% Similarity=0.195 Sum_probs=80.9
Q ss_pred ceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccC
Q 037759 189 FLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSI 268 (479)
Q Consensus 189 ~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~ 268 (479)
.|++|++++|.++.+|. ++++++|++|++++|.++.+|..+ +++++|++|++++|.+..+| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls-- 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC-- 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC--
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC--
Confidence 47777888877777776 777777888888877777777777 77788888888877777777 67777788888877
Q ss_pred CCCCCCC---C-CCCCCcccCeeecCCCCC--C---hhhhcCCCCCCCeEE
Q 037759 269 TLSAHPG---K-YCGSLENLDFISALHPCC--C---PEDILGRLPNLQNIQ 310 (479)
Q Consensus 269 ~~~~~~~---p-~i~~L~~L~~l~~~~~~~--~---~~~~l~~l~~L~~L~ 310 (479)
+|.... | .++.++.|+.++++++.. . ....+..+++|+.|+
T Consensus 517 -~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 -NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 766544 4 566777777777765211 1 111123467787775
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=1.8e-12 Score=116.19 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=99.2
Q ss_pred HHHhCcCCceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccC
Q 037759 181 EKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKL 260 (479)
Q Consensus 181 ~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L 260 (479)
+..+..+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+ ..+++|++|++++|.+..+| .+..+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 447888999999999999988888 8888999999999999988888776 88899999999999888887 58889999
Q ss_pred cEEEeccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHH----------HHhccCC
Q 037759 261 RYLNFGSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLS----------KILYRLS 330 (479)
Q Consensus 261 ~~L~l~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~l~~l~ 330 (479)
++|+++ +|.... + ..+.. +..+++|+.|++++|. .....+ ..+..++
T Consensus 118 ~~L~l~---~N~i~~-----------~------~~~~~-l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 118 RVLYMS---NNKITN-----------W------GEIDK-LAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp SEEEES---EEECCC-----------H------HHHHH-HTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHCS
T ss_pred CEEECC---CCcCCc-----------h------hHHHH-HhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhCC
Confidence 999998 653221 0 11234 7788889999998765 433322 2356666
Q ss_pred CccEEE
Q 037759 331 CLESLK 336 (479)
Q Consensus 331 ~L~~L~ 336 (479)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 666665
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=4.3e-11 Score=106.64 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=76.5
Q ss_pred CceeEEEecCCcCccCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEec
Q 037759 188 KFLRVLDLGSLVLIRYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFG 266 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~ 266 (479)
++|++|++++|.++.+|..+.++++|++|++++|.++.++...|.++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 56888888888888888778888888888888888887776655888888888888887777764 47788888888888
Q ss_pred cCCCCCCCC-CCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCC
Q 037759 267 SITLSAHPG-KYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 267 ~~~~~~~~~-p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
+|.... | ... +..+++|+.|++.+|.
T Consensus 111 ---~N~l~~~~-------------------~~~-~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 ---GNDISVVP-------------------EGA-FNDLSALSHLAIGANP 137 (193)
T ss_dssp ---SSCCCBCC-------------------TTT-TTTCTTCCEEECCSSC
T ss_pred ---CCCCCeeC-------------------hhh-hhcCccccEEEeCCCC
Confidence 655433 2 112 5566677777776443
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=1e-10 Score=104.13 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=38.1
Q ss_pred ceeEEEecCCcCccCchh--hcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEe
Q 037759 189 FLRVLDLGSLVLIRYPSE--IEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNF 265 (479)
Q Consensus 189 ~L~~L~L~~~~l~~lp~~--l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 265 (479)
+|++|++++|.++.++.. +.++++|++|++++|.++.+++..|+++++|++|++++|.+..++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555544332 45555555555555555544222225555555555555555444432 445555555555
Q ss_pred c
Q 037759 266 G 266 (479)
Q Consensus 266 ~ 266 (479)
+
T Consensus 110 ~ 110 (192)
T 1w8a_A 110 Y 110 (192)
T ss_dssp C
T ss_pred C
Confidence 5
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=2.2e-10 Score=111.05 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=54.4
Q ss_pred CcceEEEEecccCCCCCccccccCccCceEEecc-------CC---CCCcc-eEeeccCCCCCeeEE-cCCCCCCccEeE
Q 037759 358 PSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS-------DG---FPKLK-VLHLKSMLWLQEWTM-GIRAMPKLECSI 425 (479)
Q Consensus 358 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~-------~~---~~~L~-~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 425 (479)
++|+.+++.+|.++..+-..+..+++|+.+.+.. .+ +++|+ .+.+.+ +++.++. ....+++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEE
Confidence 5555555555555544444555566666555533 22 23455 555554 4444431 234568899999
Q ss_pred EecCCCCCCCcc-cccCCCCCCEEEe
Q 037759 426 LNPCAHLKMIPE-QLWCLKSLNKLEL 450 (479)
Q Consensus 426 l~~c~~l~~lp~-~l~~l~~L~~L~l 450 (479)
+.+ +.++.++. .+.++++|+.++.
T Consensus 304 l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred eCC-CccCccchhhhcCCcchhhhcc
Confidence 876 57888774 7788999998863
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=9.7e-11 Score=121.79 Aligned_cols=158 Identities=17% Similarity=0.116 Sum_probs=105.9
Q ss_pred Cccccccc--CCCccEEEEecCCCCC---------CCcchhHHHhCcCCceeEEE-ecCCcCccCch------hhccc--
Q 037759 151 DFEFLDHF--DSFLHSLLHLTLGSHY---------LDSNYCEKIYKMFKFLRVLD-LGSLVLIRYPS------EIEYV-- 210 (479)
Q Consensus 151 ~~~~~~~~--~~~Lr~L~l~~~~~~~---------~~~~~~~~~~~~l~~L~~L~-L~~~~l~~lp~------~l~~L-- 210 (479)
...+|+.+ +++|+.|.+.++.... ......+..+..+++|+.|+ ++.+.+..++. .+..+
T Consensus 361 L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~ 440 (567)
T 1dce_A 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc
Confidence 34455555 6666666654332000 02335667889999999999 66665543332 12221
Q ss_pred ccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-CCCCCCcccCeeec
Q 037759 211 FLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-KYCGSLENLDFISA 289 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p~i~~L~~L~~l~~ 289 (479)
..|++|++++|.++.+|. + +++++|+.|++++|.+..+|..++++++|++|+++ +|.... |.++.++.|+.+++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls---~N~l~~lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS---DNALENVDGVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC---SSCCCCCGGGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCCCcC-c-cccccCcEeecCcccccccchhhhcCCCCCEEECC---CCCCCCCcccCCCCCCcEEEC
Confidence 369999999999999997 6 99999999999999999999999999999999999 876554 44445555555555
Q ss_pred CCC---CCC-hhhhcCCCCCCCeEEEEeC
Q 037759 290 LHP---CCC-PEDILGRLPNLQNIQIWGD 314 (479)
Q Consensus 290 ~~~---~~~-~~~~l~~l~~L~~L~l~~~ 314 (479)
+++ ... +.. ++.+++|+.|++++|
T Consensus 516 s~N~l~~~~~p~~-l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 516 CNNRLQQSAAIQP-LVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSCCCSSSTTGG-GGGCTTCCEEECTTS
T ss_pred CCCCCCCCCCcHH-HhcCCCCCEEEecCC
Confidence 431 111 333 555555555555544
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=5.6e-11 Score=103.99 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=40.0
Q ss_pred CceeEEEecCCcCccC-chhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEe
Q 037759 188 KFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNF 265 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 265 (479)
++|++|++++|.+..+ |..+.++++|++|+|++|.++.+|..+|+++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4455555555555544 33445555555555555555555544434555555555555555555443 445555555555
Q ss_pred c
Q 037759 266 G 266 (479)
Q Consensus 266 ~ 266 (479)
+
T Consensus 113 ~ 113 (174)
T 2r9u_A 113 Y 113 (174)
T ss_dssp C
T ss_pred C
Confidence 5
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=9.5e-11 Score=102.54 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=82.7
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hcccccCCeeecC
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFLLRYLNLN 219 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~L~ 219 (479)
+.+.+. ++....+|..+.++|+.|.+.+|. +..+.+..|..+++|++|+|++|.++.+|.. +.++++|++|+++
T Consensus 15 ~~l~~~-~n~l~~iP~~~~~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQ-NIRLASVPAGIPTDKQRLWLNNNQ----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECC-SSCCSSCCSCCCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeC-CCCCCccCCCcCCCCcEEEeCCCC----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 345555 566666777667788888888887 5556667788888888888888888877755 5778888888888
Q ss_pred CCCCccCChhHHhcCcCCcEEecCCCcccccchhhhc
Q 037759 220 IPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWK 256 (479)
Q Consensus 220 ~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~ 256 (479)
+|.++.+|+..|.++++|++|++++|.+...+..+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccccHHH
Confidence 8888888877447888888888888877766654433
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=1.3e-10 Score=101.18 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=45.1
Q ss_pred CceeEEEecCCcCccC-chhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEe
Q 037759 188 KFLRVLDLGSLVLIRY-PSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNF 265 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 265 (479)
++|++|+|++|.++.+ |..+.++++|++|++++|.++.+|+..|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4555556666555544 34455555666666666655555555445556666666666655555543 555556666665
Q ss_pred c
Q 037759 266 G 266 (479)
Q Consensus 266 ~ 266 (479)
+
T Consensus 110 ~ 110 (170)
T 3g39_A 110 L 110 (170)
T ss_dssp C
T ss_pred C
Confidence 5
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=1.2e-10 Score=101.53 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCcccccccCCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchh-hcccccCCeeecC
Q 037759 141 KRFTVHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSE-IEYVFLLRYLNLN 219 (479)
Q Consensus 141 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~L~ 219 (479)
+.+.+. ++....+|..+.++++.|.+.+|. +..+.+..|..+++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 12 ~~l~~s-~n~l~~ip~~~~~~l~~L~L~~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCS-GKSLASVPTGIPTTTQVLYLYDNQ----ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECT-TSCCSSCCSCCCTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeC-CCCcCccCccCCCCCcEEEcCCCc----CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456666 666777887778999999999998 6667778899999999999999999988765 6899999999999
Q ss_pred CCCCccCChhHHhcCcCCcEEecCCCcccccch
Q 037759 220 IPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD 252 (479)
Q Consensus 220 ~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~ 252 (479)
+|.++.+|+..|.++++|++|++++|.+...+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999998765999999999999997665543
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=1.3e-09 Score=95.52 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=63.3
Q ss_pred CceeEEEecCCcCccCch-hhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEe
Q 037759 188 KFLRVLDLGSLVLIRYPS-EIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNF 265 (479)
Q Consensus 188 ~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 265 (479)
++|++|++++|.++.+|. .+.++++|++|++++|.++.+|...|+++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 577888888888776654 457788888888888888877776557788888888888877777754 577888888888
Q ss_pred ccCCCCCCC
Q 037759 266 GSITLSAHP 274 (479)
Q Consensus 266 ~~~~~~~~~ 274 (479)
+ +|...
T Consensus 108 ~---~N~l~ 113 (177)
T 2o6r_A 108 D---TNQLK 113 (177)
T ss_dssp C---SSCCS
T ss_pred c---CCcce
Confidence 8 65433
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=5.5e-12 Score=112.97 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=101.8
Q ss_pred CeEEEEEEcC-CCCccccccc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccccCCe
Q 037759 139 NVKRFTVHGN-LNDFEFLDHF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVFLLRY 215 (479)
Q Consensus 139 ~~~~l~l~~~-~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 215 (479)
.++...+.+. .....++..+ +++|+.|.+.+|.. ..+. .+..+++|++|++++|.++.+|..+..+++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l----~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI----EKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE----SCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC----cccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 3444444421 2344456566 99999999999873 3333 788899999999999999999998888999999
Q ss_pred eecCCCCCccCChhHHhcCcCCcEEecCCCcccccch--hhhcCccCcEEEeccCCCCCCC
Q 037759 216 LNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD--EFWKMSKLRYLNFGSITLSAHP 274 (479)
Q Consensus 216 L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~ 274 (479)
|++++|.++.+| .+ +++++|++|++++|.+..+|. .+..+++|++|+++ +|...
T Consensus 98 L~L~~N~l~~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~---~N~l~ 153 (198)
T 1ds9_A 98 LWISYNQIASLS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA---GNPLY 153 (198)
T ss_dssp EEEEEEECCCHH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC---SCHHH
T ss_pred EECcCCcCCcCC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec---CCccc
Confidence 999999999987 56 899999999999999988875 68999999999999 77543
No 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.99 E-value=2.7e-10 Score=122.19 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=74.5
Q ss_pred hhhHHHHHHHhccCCchhh-HHHHhhhcccCCCceechhhHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeecCCC
Q 037759 21 LDEPRGLQVVAYCMLPFYL-KLCCLYLSVFLVHFEISTKQSYQLWIAEGFIPNNNEATAERYLEQLINGGFVDAGKRGVR 99 (479)
Q Consensus 21 ~~~i~~~L~lSY~~L~~~~-K~cfl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~ 99 (479)
.+.+..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++|||+...
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~---- 421 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP---- 421 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS----
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC----
Confidence 4689999999999999999 99999999999999999999999999987 245889999999999999841
Q ss_pred CCeeEEEeChhHHHHH
Q 037759 100 GRINTCSIPGHCSPAL 115 (479)
Q Consensus 100 g~~~~~~mHdli~~l~ 115 (479)
....++|||++++++
T Consensus 422 -~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 422 -KESTISIPSIYLELK 436 (1221)
T ss_dssp -SSSEEBCCCHHHHHH
T ss_pred -CCCEEEehHHHHHHh
Confidence 225799999998865
No 142
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.97 E-value=9.1e-10 Score=125.42 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=81.3
Q ss_pred hhhHHHHHHHhccCCchhhHHHHhhhcccCCCceechhhHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeecCCCC
Q 037759 21 LDEPRGLQVVAYCMLPFYLKLCCLYLSVFLVHFEISTKQSYQLWIAEGFIPNNNEATAERYLEQLINGGFVDAGKRGVRG 100 (479)
Q Consensus 21 ~~~i~~~L~lSY~~L~~~~K~cfl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g 100 (479)
.+.++.++++||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++... +|
T Consensus 361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~ 430 (1249)
T 3sfz_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NG 430 (1249)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SS
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CC
Confidence 35799999999999999999999999999999999999999999754 567899999999999999765 34
Q ss_pred CeeEEEeChhHHHHHHHhhhhC
Q 037759 101 RINTCSIPGHCSPALLTVAFEG 122 (479)
Q Consensus 101 ~~~~~~mHdli~~l~~~~~~~~ 122 (479)
+...|+|||++|++++..+.++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 4467999999999999886644
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=7.5e-10 Score=107.23 Aligned_cols=234 Identities=13% Similarity=0.007 Sum_probs=128.8
Q ss_pred CCeEEEEEEcCCCCccccccc---CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcc-----
Q 037759 138 ENVKRFTVHGNLNDFEFLDHF---DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEY----- 209 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~----- 209 (479)
..+++|.+. +.........+ +++|+.|+++++.... .... ...++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~-g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~--~~~~---~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~ 96 (329)
T 3sb4_A 25 NSITHLTLT-GKLNAEDFRHLRDEFPSLKVLDISNAEIKM--YSGK---AGTYPNGKFYIYMANFVP--AYAFSNVVNGV 96 (329)
T ss_dssp HHCSEEEEE-EEECHHHHHHHHHSCTTCCEEEEEEEEECC--EEES---SSSSGGGCCEEECTTEEC--TTTTEEEETTE
T ss_pred CceeEEEEe-ccccHHHHHHHHHhhccCeEEecCcceeEE--ecCc---cccccccccccccccccC--HHHhccccccc
Confidence 346667776 32211111122 5778888888887420 0111 112223455555555332 134556
Q ss_pred ---cccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCCC----CC--C-CC
Q 037759 210 ---VFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSAH----PG--K-YC 278 (479)
Q Consensus 210 ---L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~----~~--p-~i 278 (479)
+.+|+.+++.+ .++.+++..|.++++|+.+++.+|.+..++.. |....++..+... .... .. + .+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~---~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG---SSDAYRFKNRWEHFAF 172 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT---CTHHHHTSTTTTTSCE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc---chhhhhcccccccccc
Confidence 88899998888 88888888778889999999988877777644 6666666666655 2110 00 1 12
Q ss_pred CCCcccC-eeecCCCCCChhhh---cCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEe-ec
Q 037759 279 GSLENLD-FISALHPCCCPEDI---LGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIIL-AK 353 (479)
Q Consensus 279 ~~L~~L~-~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l-~~ 353 (479)
.++..|+ .+.+.......... -....++..+.+.+.- ...........+++|+++++.... ++.+.- .+
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~----i~~I~~~aF 246 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTN----ATTIPDFTF 246 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBC----CCEECTTTT
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCC----cceecHhhh
Confidence 1333443 22332211111110 1234567777777643 333333333457888888886511 111100 22
Q ss_pred ccccCcceEEEEecccCCCCCccccccCccCc-eEEecc
Q 037759 354 YQFPPSLTHLSFLNIELMDDPMPALEKLAVLR-KLACSS 391 (479)
Q Consensus 354 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~-~l~~~~ 391 (479)
..+ ++|+.+++.++ ++...-..+..+++|+ .+.+..
T Consensus 247 ~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 247 AQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp TTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred hCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 344 67777777776 5555555677788887 777654
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=4.1e-08 Score=97.48 Aligned_cols=159 Identities=12% Similarity=0.150 Sum_probs=103.7
Q ss_pred CCeEEEEEEcCCCCccccc-cc-CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCC
Q 037759 138 ENVKRFTVHGNLNDFEFLD-HF-DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLR 214 (479)
Q Consensus 138 ~~~~~l~l~~~~~~~~~~~-~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~ 214 (479)
..+..+.+. +.... ++. .+ -.+|+.+.+..+ +..+...+|.++ +|+.+.+.. .++.++ .+|.++.+|+
T Consensus 113 ~~l~~i~ip-~~i~~-I~~~aF~~~~L~~i~l~~~-----i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILP-NSVKS-IPKDAFRNSQIAKVVLNEG-----LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp SSCSEEECC-TTCCE-ECTTTTTTCCCSEEECCTT-----CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred CCccEEEEC-CccCE-ehHhhcccCCccEEEeCCC-----ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 455566665 43333 433 33 447888887654 444566778775 699999986 566664 6788899999
Q ss_pred eeecCCCCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecC
Q 037759 215 YLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISAL 290 (479)
Q Consensus 215 ~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~ 290 (479)
.+++.+|.++.+|...|. ..+|+.+.+.. ++..++. .|.++++|+.+.+. .+ ... + .+.+ ..|+.+.+.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~---~~-l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP---EN-VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC---TT-CCEECTTTTTT-CCCSEEEEE
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecC---CC-ccCcccccccc-CCccEEEeC
Confidence 999999999999988865 68999999985 4777764 48889999999988 42 111 2 2323 445554443
Q ss_pred CCCCC--hhhhcCCCCCCCeEEEEe
Q 037759 291 HPCCC--PEDILGRLPNLQNIQIWG 313 (479)
Q Consensus 291 ~~~~~--~~~~l~~l~~L~~L~l~~ 313 (479)
+.... ... +..+++|+.+.+.+
T Consensus 257 ~~i~~I~~~a-F~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 257 NGVTNIASRA-FYYCPELAEVTTYG 280 (401)
T ss_dssp TTCCEECTTT-TTTCTTCCEEEEES
T ss_pred CCccEEChhH-hhCCCCCCEEEeCC
Confidence 31111 122 55666666666654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=9.6e-09 Score=100.10 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=52.0
Q ss_pred hCcCCceeEEEecC-CcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCc
Q 037759 184 YKMFKFLRVLDLGS-LVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLR 261 (479)
Q Consensus 184 ~~~l~~L~~L~L~~-~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~ 261 (479)
+..+++|++|+|++ |.++.+| ..|.+|++|++|+|++|.++.+|+..|+++++|++|+|++|.+..+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 66666666666664 6666554 456666666666666666666665554666666666666666666665433333366
Q ss_pred EEEec
Q 037759 262 YLNFG 266 (479)
Q Consensus 262 ~L~l~ 266 (479)
+|++.
T Consensus 107 ~l~l~ 111 (347)
T 2ifg_A 107 ELVLS 111 (347)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 66666
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.78 E-value=7.1e-08 Score=95.77 Aligned_cols=247 Identities=7% Similarity=0.011 Sum_probs=145.3
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNL 237 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L 237 (479)
+..++.+.+.+. ...+...+|.++ +|+.+.+..+ ++.++ .+|.+ .+|+.+.+.. .++.++...|.++.+|
T Consensus 112 ~~~l~~i~ip~~-----i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNS-----VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTT-----CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCc-----cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 566666666553 444566778875 7999998776 66664 45666 4799999986 7888888888999999
Q ss_pred cEEecCCCcccccchhhhcCccCcEEEeccCCCCCCCC-C--CCCCCcccCeeecCCCCCChh-hhcCCCCCCCeEEEEe
Q 037759 238 YTLDMPFSYIDHTADEFWKMSKLRYLNFGSITLSAHPG-K--YCGSLENLDFISALHPCCCPE-DILGRLPNLQNIQIWG 313 (479)
Q Consensus 238 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~-p--~i~~L~~L~~l~~~~~~~~~~-~~l~~l~~L~~L~l~~ 313 (479)
+.+++.+|++..+|.......+|+.+.+. .+ ... + .+.++..|+.+.+......+. .++.. .+|+.+.+.+
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp---~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLP---VT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECC---TT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET
T ss_pred CeeecCCCcceEechhhEeecccCEEEeC---Cc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC
Confidence 99999999999998775556899999988 43 222 3 444666666666654211111 11333 4566666642
Q ss_pred CCccchHHHHHHhccCCCccEEEeecCCCCCCccEEEeecccccCcceEEEEecccCC-----CCCccccccCccCceEE
Q 037759 314 DLIYYQSLLSKILYRLSCLESLKLAKESKIPRRSNIILAKYQFPPSLTHLSFLNIELM-----DDPMPALEKLAVLRKLA 388 (479)
Q Consensus 314 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~lp~L~~L~l~~~~lp~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~l~ 388 (479)
+ ....-...+..+++|+++.+. ++.+. ...-..+..+++|+.+.
T Consensus 258 ~---i~~I~~~aF~~c~~L~~l~l~----------------------------~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 258 G---VTNIASRAFYYCPELAEVTTY----------------------------GSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp T---CCEECTTTTTTCTTCCEEEEE----------------------------SSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred C---ccEEChhHhhCCCCCCEEEeC----------------------------CccccCCcccEECHHHhhCCccCCeEE
Confidence 1 111112234455555555554 33221 11222344444444444
Q ss_pred ecc-------CC---CCCcceEeeccCCCCCeeEEc-CCCCCCccEeEEecCCCCCCCc-ccccCC-CCCCEEEeeCCc
Q 037759 389 CSS-------DG---FPKLKVLHLKSMLWLQEWTMG-IRAMPKLECSILNPCAHLKMIP-EQLWCL-KSLNKLELWWPE 454 (479)
Q Consensus 389 ~~~-------~~---~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp-~~l~~l-~~L~~L~l~~c~ 454 (479)
+.. .+ +++|+.+.+.. +++.+... ...+ +|+.+.+.++ .+..++ ..+..+ .+++.|.+....
T Consensus 307 l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 307 IPESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCTTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred eCCceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 321 22 24455555532 24444211 2235 7899999884 555554 344555 478889887543
No 147
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.66 E-value=4.4e-08 Score=102.65 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=77.0
Q ss_pred hhhHHHHHHHhccCCchhhHHHHhhhcccCCCceechhhHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeecCCCC
Q 037759 21 LDEPRGLQVVAYCMLPFYLKLCCLYLSVFLVHFEISTKQSYQLWIAEGFIPNNNEATAERYLEQLINGGFVDAGKRGVRG 100 (479)
Q Consensus 21 ~~~i~~~L~lSY~~L~~~~K~cfl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g 100 (479)
...+..++..||+.||++.|.||++||+||+|+.|+.+.++..|.++ .+.+..++++|+++||++... +|
T Consensus 361 ~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~ 430 (591)
T 1z6t_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NG 430 (591)
T ss_dssp CHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ET
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CC
Confidence 35799999999999999999999999999999999999999999643 345788999999999998654 23
Q ss_pred CeeEEEeChhHHHHHHHhh
Q 037759 101 RINTCSIPGHCSPALLTVA 119 (479)
Q Consensus 101 ~~~~~~mHdli~~l~~~~~ 119 (479)
....++||++++++++...
T Consensus 431 ~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 431 KSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TEEEEECCHHHHHHHHHHT
T ss_pred CccEEEEcHHHHHHHHhhh
Confidence 4467999999999998773
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=7.3e-08 Score=93.78 Aligned_cols=95 Identities=20% Similarity=0.072 Sum_probs=79.9
Q ss_pred EEEecCC-cCccCchhhcccccCCeeecCC-CCCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccC
Q 037759 192 VLDLGSL-VLIRYPSEIEYVFLLRYLNLNI-PSLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSI 268 (479)
Q Consensus 192 ~L~L~~~-~l~~lp~~l~~L~~L~~L~L~~-~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~ 268 (479)
.++++++ .++.+|. +..+.+|++|+|++ |.+..+|+..|+++++|+.|+|++|.+..+|. .|.+|++|++|+++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-- 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS-- 88 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC--
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC--
Confidence 4688888 8999999 99999999999996 99999997766999999999999999999875 58999999999999
Q ss_pred CCCCCCC-C-CCC-CCcccCeeecCC
Q 037759 269 TLSAHPG-K-YCG-SLENLDFISALH 291 (479)
Q Consensus 269 ~~~~~~~-p-~i~-~L~~L~~l~~~~ 291 (479)
+|.... | .+. .+. |+.+++.+
T Consensus 89 -~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 89 -FNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp -SSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred -CCccceeCHHHcccCC-ceEEEeeC
Confidence 887766 5 443 333 66666554
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=3e-08 Score=97.45 Aligned_cols=104 Identities=15% Similarity=0.024 Sum_probs=57.6
Q ss_pred CCCccEEEEecCCCCCCCcchhHH----HhC-cCCceeEEEecCCcCcc-Cchh-hcccccCCeeecCCCCCccCChhHH
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEK----IYK-MFKFLRVLDLGSLVLIR-YPSE-IEYVFLLRYLNLNIPSLKSLPSSLL 231 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~----~~~-~l~~L~~L~L~~~~l~~-lp~~-l~~L~~L~~L~L~~~~l~~lp~~i~ 231 (479)
.+.|+.|.+.+|.. ...... .+. ..++|++|+|++|.++. -... ...+.+|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l----~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRM----TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCC----CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCC----CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 45666676666663 222222 222 22577777777777652 1122 2235567777777777654322211
Q ss_pred h-----cCcCCcEEecCCCcccc-----cchhhhcCccCcEEEec
Q 037759 232 N-----SLLNLYTLDMPFSYIDH-----TADEFWKMSKLRYLNFG 266 (479)
Q Consensus 232 ~-----~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~ 266 (479)
+ ..++|++|++++|.++. ++..+..+++|++|+++
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence 1 34667777777775543 34445666777777777
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.34 E-value=4.7e-07 Score=88.89 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=24.3
Q ss_pred ccCCeeecCCCCCcc-----CChhHHhcCcCCcEEecCCCcccc-----cchhhhcCccCcEEEec
Q 037759 211 FLLRYLNLNIPSLKS-----LPSSLLNSLLNLYTLDMPFSYIDH-----TADEFWKMSKLRYLNFG 266 (479)
Q Consensus 211 ~~L~~L~L~~~~l~~-----lp~~i~~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~ 266 (479)
.+|++|+|++|.++. ++..+ ...++|++|++++|.+.. ++..+...++|++|+++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred CccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 345555555554432 22223 444455555555553332 22333444445555555
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=3.6e-06 Score=83.36 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=22.8
Q ss_pred CCCCccEeEEecCCCCCCCc-ccccCCCCCCEEEeeC
Q 037759 417 AMPKLECSILNPCAHLKMIP-EQLWCLKSLNKLELWW 452 (479)
Q Consensus 417 ~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 452 (479)
.+.+|+.+.+.. .++.++ .++.++++|+.+.+..
T Consensus 341 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 341 GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 346677777754 366665 4667788888888754
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=2e-06 Score=75.60 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=65.2
Q ss_pred CCCccEEEEecC-CCCCCCcchhHHHhCcCCceeEEEecCCcCc-----cCchhhcccccCCeeecCCCCCcc-----CC
Q 037759 159 DSFLHSLLHLTL-GSHYLDSNYCEKIYKMFKFLRVLDLGSLVLI-----RYPSEIEYVFLLRYLNLNIPSLKS-----LP 227 (479)
Q Consensus 159 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~l~~L~~L~~L~L~~~~l~~-----lp 227 (479)
.+.|+.|.+.+| .....-.......+...++|++|+|++|.+. .+...+...++|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 566777777766 4211001123455666677777777777765 233445555677777777777663 34
Q ss_pred hhHHhcCcCCcEEec--CCCcccc-----cchhhhcCccCcEEEec
Q 037759 228 SSLLNSLLNLYTLDM--PFSYIDH-----TADEFWKMSKLRYLNFG 266 (479)
Q Consensus 228 ~~i~~~l~~L~~L~l--~~~~l~~-----lp~~~~~L~~L~~L~l~ 266 (479)
..+ ...++|++|++ ++|.+.. +...+...++|++|+++
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 445 66667777777 6665543 34455666777777777
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.12 E-value=1.1e-05 Score=79.94 Aligned_cols=270 Identities=14% Similarity=0.111 Sum_probs=122.6
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCC----------
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLP---------- 227 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp---------- 227 (479)
|.+|+++.+..+ +..+...+|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+ +..+.
T Consensus 70 c~~L~~i~lp~~-----i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 70 CRKVTEIKIPST-----VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp CTTEEEEECCTT-----CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CCCceEEEeCCC-----ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 677887777532 44455677888888888888654 44443 34666666666555432 22222
Q ss_pred ------------hhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCC-C-CCCCCcccCeeecCCC
Q 037759 228 ------------SSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPG-K-YCGSLENLDFISALHP 292 (479)
Q Consensus 228 ------------~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~-p-~i~~L~~L~~l~~~~~ 292 (479)
...|.++.+|+.+.+..+ +..++. .+..+.+|+.+.+. .+...- . .+.+...|+.+.....
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~---~~~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP---RNLKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC---TTCCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcC---CCceEeCchhhccccccceeecCCC
Confidence 223344555555555432 233332 24445555555444 221000 1 2223334443333321
Q ss_pred CCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhccCCCccEEEeec------CCCC---CCccEEEe--------eccc
Q 037759 293 CCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILYRLSCLESLKLAK------ESKI---PRRSNIIL--------AKYQ 355 (479)
Q Consensus 293 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~------~~~l---p~L~~L~l--------~~~~ 355 (479)
............+|+.+.+.... ...-...+..+..|+.+.+.. ...+ +.++.+.. .+..
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~ 295 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYG 295 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTT
T ss_pred ceEeehhhcccCCCceEEECCCc---eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccc
Confidence 11111102223455555554210 000111344555666666544 1111 23333322 1223
Q ss_pred ccCcceEEEEecccCCCCCccccccCccCceEEecc-------CCC---CCcceEeeccCCCCCeeEE-cCCCCCCccEe
Q 037759 356 FPPSLTHLSFLNIELMDDPMPALEKLAVLRKLACSS-------DGF---PKLKVLHLKSMLWLQEWTM-GIRAMPKLECS 424 (479)
Q Consensus 356 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~-------~~~---~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 424 (479)
. .+|+.+.+..+ ++...-..+..+.+|+.+.+.. .+| .+|+.+.+.. +++.+.. ....+++|+.+
T Consensus 296 ~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 296 C-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp C-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEE
T ss_pred c-ccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEE
Confidence 3 56666666543 3333334556667777665532 222 2344433321 1222211 11234667777
Q ss_pred EEecCCCCCCCcccccCCCCCCEE
Q 037759 425 ILNPCAHLKMIPEQLWCLKSLNKL 448 (479)
Q Consensus 425 ~l~~c~~l~~lp~~l~~l~~L~~L 448 (479)
.+.. .++.+...+.+.++|+.+
T Consensus 372 ~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 372 ELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEG--GGGGGGGGBCTTCEEEEE
T ss_pred EECC--CCEEhhheecCCCCCcEE
Confidence 7754 345555556666666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=1.1e-05 Score=78.58 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccc-hhhh--cCccCcEEEeccCCCCCCCCCCCCCC
Q 037759 205 SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTA-DEFW--KMSKLRYLNFGSITLSAHPGKYCGSL 281 (479)
Q Consensus 205 ~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp-~~~~--~L~~L~~L~l~~~~~~~~~~p~i~~L 281 (479)
..+..+++|+.|+++++.-..++. + . +++|++|++..|.+..-. ..+. .+++|++|+++ .+....-+-...
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~---~~~~~~~~~~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY---VGVEDYGFDGDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE---CBCGGGTCCSCG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe---ccccccccchhH
Confidence 334455666666666653223433 3 2 566777776665432211 1222 56777777765 211000000000
Q ss_pred cccCeeecCCCCCChhhhcCCCCCCCeEEEEeCCccchHHHHHHhc---cCCCccEEEeecCCCC--------CCccEEE
Q 037759 282 ENLDFISALHPCCCPEDILGRLPNLQNIQIWGDLIYYQSLLSKILY---RLSCLESLKLAKESKI--------PRRSNII 350 (479)
Q Consensus 282 ~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~l--------p~L~~L~ 350 (479)
+.+. .... ...+++|+.|.+.+|. ........+. .+++|++|+++.+.+- ..++
T Consensus 240 ~~l~---------~~l~-~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~--- 304 (362)
T 2ra8_A 240 NVFR---------PLFS-KDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD--- 304 (362)
T ss_dssp GGTG---------GGSC-TTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH---
T ss_pred HHHH---------HHHh-cCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc---
Confidence 0000 0000 1246677777777665 4433333332 3567777777652211 1122
Q ss_pred eecccccCcceEEEEecccCCCCCcccc
Q 037759 351 LAKYQFPPSLTHLSFLNIELMDDPMPAL 378 (479)
Q Consensus 351 l~~~~lp~~L~~L~l~~~~l~~~~~~~l 378 (479)
.+ ++|+.|++++|.+++.....+
T Consensus 305 ----~l-~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 305 ----KI-KHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp ----HH-TTCSEEECCSBBCCHHHHHHH
T ss_pred ----cC-CcceEEECCCCcCCHHHHHHH
Confidence 23 778888888887655444433
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=1.1e-05 Score=74.90 Aligned_cols=84 Identities=24% Similarity=0.099 Sum_probs=63.8
Q ss_pred HHHhCcCCceeEEEecCCcCccC---chhhcccccCCeeecCCCCCccCChhHHhcCc--CCcEEecCCCcccc-cc---
Q 037759 181 EKIYKMFKFLRVLDLGSLVLIRY---PSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLL--NLYTLDMPFSYIDH-TA--- 251 (479)
Q Consensus 181 ~~~~~~l~~L~~L~L~~~~l~~l---p~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~--~L~~L~l~~~~l~~-lp--- 251 (479)
..+..++++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+ ..+ ..+. +|++|++++|.+.. +|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcch
Confidence 33446788999999999998754 46677899999999999998877 334 5555 89999999996643 33
Q ss_pred ----hhhhcCccCcEEEec
Q 037759 252 ----DEFWKMSKLRYLNFG 266 (479)
Q Consensus 252 ----~~~~~L~~L~~L~l~ 266 (479)
..+..+++|+.|+-.
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 236788999988754
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=2.7e-06 Score=73.36 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=63.1
Q ss_pred CcceEEEEecccCCCCCccccccCccCceEEeccCCCCCcceEeeccCCCCCeeEEc-CCC----CCCccEeEEecCCCC
Q 037759 358 PSLTHLSFLNIELMDDPMPALEKLAVLRKLACSSDGFPKLKVLHLKSMLWLQEWTMG-IRA----MPKLECSILNPCAHL 432 (479)
Q Consensus 358 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~----~~~L~~L~l~~c~~l 432 (479)
..|+.|++++|.+++..+..+. .+++|+.|.+++|..+++.... ... .++|+.|++++|+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-------------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-------------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-------------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhc-------------CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 4689999999998766555443 3667888999999887764321 112 357999999999998
Q ss_pred CCCc-ccccCCCCCCEEEeeCCc
Q 037759 433 KMIP-EQLWCLKSLNKLELWWPE 454 (479)
Q Consensus 433 ~~lp-~~l~~l~~L~~L~l~~c~ 454 (479)
++-. ..+..+++|+.|++++|+
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCT
T ss_pred CHHHHHHHhcCCCCCEEECCCCC
Confidence 8522 356789999999999998
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=1.9e-05 Score=68.03 Aligned_cols=82 Identities=6% Similarity=-0.066 Sum_probs=38.5
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc-Ccc-Cchhhccc----ccCCeeecCCCC-CccCC-hhH
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV-LIR-YPSEIEYV----FLLRYLNLNIPS-LKSLP-SSL 230 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~-lp~~l~~L----~~L~~L~L~~~~-l~~lp-~~i 230 (479)
...|+.|+++++. ++......+..+++|+.|+|++|. ++. -...+..+ ++|++|++++|. ++.-. ..+
T Consensus 60 ~~~L~~LDLs~~~----Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 60 KYKIQAIDATDSC----IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCCEEEEEEESCC----CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred CceEeEEeCcCCC----ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 3456666666665 222222344566666666666664 441 12223332 245555555543 44211 122
Q ss_pred HhcCcCCcEEecCCC
Q 037759 231 LNSLLNLYTLDMPFS 245 (479)
Q Consensus 231 ~~~l~~L~~L~l~~~ 245 (479)
.++++|++|++++|
T Consensus 136 -~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 136 -HHFRNLKYLFLSDL 149 (176)
T ss_dssp -GGCTTCCEEEEESC
T ss_pred -hcCCCCCEEECCCC
Confidence 44555555555555
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=1.5e-05 Score=69.91 Aligned_cols=120 Identities=10% Similarity=0.020 Sum_probs=87.1
Q ss_pred cchhHHHhCcCCceeEEEecCC-cCc-----cCchhhcccccCCeeecCCCCCcc-----CChhHHhcCcCCcEEecCCC
Q 037759 177 SNYCEKIYKMFKFLRVLDLGSL-VLI-----RYPSEIEYVFLLRYLNLNIPSLKS-----LPSSLLNSLLNLYTLDMPFS 245 (479)
Q Consensus 177 ~~~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~l~~L~~L~~L~L~~~~l~~-----lp~~i~~~l~~L~~L~l~~~ 245 (479)
.......+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. +...+ ...++|++|++++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCC
Confidence 3455678889999999999999 876 345667778899999999999873 44555 77789999999999
Q ss_pred cccc-----cchhhhcCccCcEEEe--ccCCCCCCCCCCCCCCcccCeeecCCCCCChhhhcCCCCCCCeEEEEeCC
Q 037759 246 YIDH-----TADEFWKMSKLRYLNF--GSITLSAHPGKYCGSLENLDFISALHPCCCPEDILGRLPNLQNIQIWGDL 315 (479)
Q Consensus 246 ~l~~-----lp~~~~~L~~L~~L~l--~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 315 (479)
.+.. +...+...++|++|++ + +|.... .+....... +...+.|+.|+++++.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~---~N~i~~--------------~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQ---SQPLGN--------------NVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCC---SSCCCH--------------HHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCC---CCCCCH--------------HHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 7765 4566788889999999 6 443211 000011222 5566788888888765
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=4.7e-05 Score=74.17 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=61.9
Q ss_pred CCCeEEEEEEcCCCCccccccc-CCCccEEEEecCCCCCCCcchhHHHh--CcCCceeEEEecCC--c------CccCch
Q 037759 137 WENVKRFTVHGNLNDFEFLDHF-DSFLHSLLHLTLGSHYLDSNYCEKIY--KMFKFLRVLDLGSL--V------LIRYPS 205 (479)
Q Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~--~------l~~lp~ 205 (479)
.+.++.|.+. ++....++. + .++|+.|.+..+.. .......+ ..+++|+.|+|+.+ . +..+..
T Consensus 171 ~P~L~~L~L~-g~~~l~l~~-~~~~~L~~L~L~~~~l----~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 171 MPLLNNLKIK-GTNNLSIGK-KPRPNLKSLEIISGGL----PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CTTCCEEEEE-CCBTCBCCS-CBCTTCSEEEEECSBC----CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCCcEEEEe-CCCCceecc-ccCCCCcEEEEecCCC----ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3566666666 322112332 3 66677777665542 21111222 35667777766421 1 111111
Q ss_pred hh--cccccCCeeecCCCCCcc-CChhHH--hcCcCCcEEecCCCcccc-----cchhhhcCccCcEEEec
Q 037759 206 EI--EYVFLLRYLNLNIPSLKS-LPSSLL--NSLLNLYTLDMPFSYIDH-----TADEFWKMSKLRYLNFG 266 (479)
Q Consensus 206 ~l--~~L~~L~~L~L~~~~l~~-lp~~i~--~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~ 266 (479)
.+ ..+++|++|++++|.+.. .+..++ ..+++|++|+++.|.+.. ++..+..+++|+.|+++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 12 235667777776666552 222331 135667777776665544 33444556667777766
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=0.00022 Score=70.30 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=147.0
Q ss_pred CccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCc---CccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcC
Q 037759 161 FLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLV---LIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLN 236 (479)
Q Consensus 161 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~---l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~ 236 (479)
.|+++.+... ++.+...+|.++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ ++.++...|..+.+
T Consensus 65 ~L~sI~iP~s-----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDT-----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTT-----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTT
T ss_pred cCEEEEECCC-----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcc
Confidence 4888887654 445667789999999999988763 55553 56777888888777654 77777777788899
Q ss_pred CcEEecCCCcccccch-hhhcCccCcEEEeccCCCCCCCCC-CCCCCcccCeeecCCCCC--ChhhhcCCCCCCCeEEEE
Q 037759 237 LYTLDMPFSYIDHTAD-EFWKMSKLRYLNFGSITLSAHPGK-YCGSLENLDFISALHPCC--CPEDILGRLPNLQNIQIW 312 (479)
Q Consensus 237 L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~--~~~~~l~~l~~L~~L~l~ 312 (479)
|+.+.+..+ +..++. .+....+|+.+.+. .....-. ....-..|..+.+..... .... +..+..+......
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~---~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~a-f~~c~~l~~~~~~ 213 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLP---DSVTAIEERAFTGTALTQIHIPAKVTRIGTNA-FSECFALSTITSD 213 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECC---TTCCEECTTTTTTCCCSEEEECTTCCEECTTT-TTTCTTCCEEEEC
T ss_pred cccccccce-eeeecccceeccccccccccc---ceeeEeccccccccceeEEEECCcccccccch-hhhccccceeccc
Confidence 999988654 455553 47778888888877 4211112 111223455555443111 1122 4555566655443
Q ss_pred eCCccchHHHHHH-hc-------------cCCCccEEEeecCCCCCCccEEEe-ecccccCcceEEEEecccCCCCCccc
Q 037759 313 GDLIYYQSLLSKI-LY-------------RLSCLESLKLAKESKIPRRSNIIL-AKYQFPPSLTHLSFLNIELMDDPMPA 377 (479)
Q Consensus 313 ~~~~~~~~~~~~~-l~-------------~l~~L~~L~l~~~~~lp~L~~L~l-~~~~lp~~L~~L~l~~~~l~~~~~~~ 377 (479)
... ... .... +. ....+..+.+.. .++.+.- .+... .+|+.+.+.... ....-..
T Consensus 214 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-----~v~~i~~~aF~~c-~~L~~i~lp~~~-~~I~~~a 283 (394)
T 4gt6_A 214 SES--YPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-----GVARIETHAFDSC-AYLASVKMPDSV-VSIGTGA 283 (394)
T ss_dssp CSS--SCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-----TEEEECTTTTTTC-SSCCEEECCTTC-CEECTTT
T ss_pred ccc--ccc-ccceeecccccccccccccccccccceEEcCC-----cceEcccceeeec-ccccEEeccccc-ceecCcc
Confidence 211 000 0000 00 001111111111 1111000 12233 555555554432 1222334
Q ss_pred cccCccCceEEecc-------CCC---CCcceEeeccCCCCCeeEE-cCCCCCCccEeEEecCCCCCCCc-ccccCCCCC
Q 037759 378 LEKLAVLRKLACSS-------DGF---PKLKVLHLKSMLWLQEWTM-GIRAMPKLECSILNPCAHLKMIP-EQLWCLKSL 445 (479)
Q Consensus 378 l~~l~~L~~l~~~~-------~~~---~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L 445 (479)
+..+++|+.+.+.. .+| .+|+.+.+.+ +++.+.. ....+.+|+.+.+.. .++.++ .++.++++|
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred cccccccccccCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence 55666666655532 222 3455555532 2333321 123457899999864 577776 478889999
Q ss_pred CEEEeeCCcHH
Q 037759 446 NKLELWWPELE 456 (479)
Q Consensus 446 ~~L~l~~c~~~ 456 (479)
+.+++.+....
T Consensus 360 ~~i~~~~~~~~ 370 (394)
T 4gt6_A 360 NNIEYSGSRSQ 370 (394)
T ss_dssp CEEEESSCHHH
T ss_pred CEEEECCceee
Confidence 99999987633
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=0.0013 Score=64.74 Aligned_cols=132 Identities=9% Similarity=0.052 Sum_probs=90.4
Q ss_pred cCCCcccCC-CCeEEEEEEcCCCCccccc-cc--CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc
Q 037759 129 IMDQEVKLW-ENVKRFTVHGNLNDFEFLD-HF--DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP 204 (479)
Q Consensus 129 ~~~~~~~~~-~~~~~l~l~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp 204 (479)
++...+... ..++.+.+. +.... +.+ .+ |++|+++.+..+.... +..+...+|..+.+|+.+.+..+ ++.++
T Consensus 54 Ig~~aF~~~~~~L~sI~iP-~svt~-Ig~~AF~~C~~L~~i~~~~n~p~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIP-DTVTE-IGSNAFYNCTSLKRVTIQDNKPSC-VKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp ECTTTTTTCCSCCCEEEEC-TTCCE-ECTTTTTTCTTCCEEEEGGGCCCC-CCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred cCHhhccCCCCcCEEEEEC-CCeeE-EhHHHhhCCccCceEeecCCCCCe-eeEechhhchhcccceeeccCCc-cceeh
Confidence 334444333 457888887 55433 444 44 8999999998764211 55666788999999998877654 44443
Q ss_pred -hhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcccccchhhhcCccCcEEEec
Q 037759 205 -SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYIDHTADEFWKMSKLRYLNFG 266 (479)
Q Consensus 205 -~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 266 (479)
..+..+.+|+.+.+.. .+..++...|..+.+|+.+.+..+ +..+......-.+|+.+.+.
T Consensus 130 ~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC
T ss_pred hhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEEC
Confidence 4577889999999974 467777777789999999998764 55665443334678888776
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.47 E-value=8.9e-05 Score=68.64 Aligned_cols=81 Identities=21% Similarity=0.080 Sum_probs=62.9
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCchhhcccc--cCCeeecCCCCCc-cCCh------h
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYPSEIEYVF--LLRYLNLNIPSLK-SLPS------S 229 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~L~--~L~~L~L~~~~l~-~lp~------~ 229 (479)
+++|++|.+++|.... ....+..+..+++|++|+|++|.+..+ ..+..+. +|++|+|++|.+. .+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 7899999999999431 112346778999999999999999866 3455555 9999999999987 3552 3
Q ss_pred HHhcCcCCcEEec
Q 037759 230 LLNSLLNLYTLDM 242 (479)
Q Consensus 230 i~~~l~~L~~L~l 242 (479)
++..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4488999999984
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.05 E-value=0.0033 Score=61.35 Aligned_cols=10 Identities=0% Similarity=-0.273 Sum_probs=5.5
Q ss_pred CCCccEEEEe
Q 037759 159 DSFLHSLLHL 168 (479)
Q Consensus 159 ~~~Lr~L~l~ 168 (479)
|.+|+++.+.
T Consensus 68 C~~L~~I~lp 77 (379)
T 4h09_A 68 CYNMTKVTVA 77 (379)
T ss_dssp CTTCCEEEEC
T ss_pred CCCCCEEEeC
Confidence 5555555553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.69 E-value=0.0019 Score=52.75 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=44.6
Q ss_pred eEEEecCCcCc--cCchhhcccccCCeeecCCCCCccCChhHHhcCcCCcEEecCCCcc
Q 037759 191 RVLDLGSLVLI--RYPSEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNLYTLDMPFSYI 247 (479)
Q Consensus 191 ~~L~L~~~~l~--~lp~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L~~L~l~~~~l 247 (479)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|...|..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36788888887 8886544 3688999999999999988888899999999988843
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.87 E-value=0.014 Score=56.80 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=58.7
Q ss_pred CCCccEEEEecCCCCCCCcchhHHHhCcCCceeEEEecCCcCccCc-hhhcccccCCeeecCCCCCccCChhHHhcCcCC
Q 037759 159 DSFLHSLLHLTLGSHYLDSNYCEKIYKMFKFLRVLDLGSLVLIRYP-SEIEYVFLLRYLNLNIPSLKSLPSSLLNSLLNL 237 (479)
Q Consensus 159 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~L~~~~l~~lp~~i~~~l~~L 237 (479)
+..++.+.+... ...+...+|..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .++.++...|.++.+|
T Consensus 216 ~~~l~~i~~~~~-----~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 216 GKNLKKITITSG-----VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp CSSCSEEECCTT-----CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred ccccceeeeccc-----eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 556666555433 22233455666666776666554 44332 3455566666666643 3556666655666677
Q ss_pred cEEecCCCcccccch-hhhcCccCcEEEec
Q 037759 238 YTLDMPFSYIDHTAD-EFWKMSKLRYLNFG 266 (479)
Q Consensus 238 ~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~ 266 (479)
+.+.+.++.++.+++ .|.++.+|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcC
Confidence 777666666666653 36666666666665
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.29 E-value=0.019 Score=50.09 Aligned_cols=64 Identities=17% Similarity=0.033 Sum_probs=32.2
Q ss_pred HHHhCcCCceeEEEecCCcCc-----cCchhhcccccCCeeecCCCCCcc-----CChhHHhcCcCCcEEecCCC
Q 037759 181 EKIYKMFKFLRVLDLGSLVLI-----RYPSEIEYVFLLRYLNLNIPSLKS-----LPSSLLNSLLNLYTLDMPFS 245 (479)
Q Consensus 181 ~~~~~~l~~L~~L~L~~~~l~-----~lp~~l~~L~~L~~L~L~~~~l~~-----lp~~i~~~l~~L~~L~l~~~ 245 (479)
...+..-..|+.|+|++|.+. .+-..+..=+.|+.|+|++|.|.. +-+.+ ..-+.|++|+++++
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL-~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST-LVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT-TTTCCCSEEECCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH-hhCCceeEEECCCC
Confidence 344555556666666666654 222333344556666666665542 22222 33344666666543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.28 E-value=0.021 Score=46.40 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=44.8
Q ss_pred CeeecCCCCCc--cCChhHHhcCcCCcEEecCCCcccccchh-hhcCccCcEEEeccCCCCC
Q 037759 214 RYLNLNIPSLK--SLPSSLLNSLLNLYTLDMPFSYIDHTADE-FWKMSKLRYLNFGSITLSA 272 (479)
Q Consensus 214 ~~L~L~~~~l~--~lp~~i~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~ 272 (479)
..++-+++.++ .+|..+ -.+|++|+|++|.+..+|.+ |..+++|++|++. +|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~---~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLG---ANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC---SSC
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEec---CCC
Confidence 46788888888 999655 45799999999999999865 7889999999999 764
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.23 E-value=0.093 Score=45.76 Aligned_cols=87 Identities=6% Similarity=0.034 Sum_probs=63.8
Q ss_pred hhHHHhCcCCceeEEEecCC-cCc-----cCchhhcccccCCeeecCCCCCc-----cCChhHHhcCcCCcEEecCCCcc
Q 037759 179 YCEKIYKMFKFLRVLDLGSL-VLI-----RYPSEIEYVFLLRYLNLNIPSLK-----SLPSSLLNSLLNLYTLDMPFSYI 247 (479)
Q Consensus 179 ~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~l~~L~~L~~L~L~~~~l~-----~lp~~i~~~l~~L~~L~l~~~~l 247 (479)
.+.....+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+. .+-+.+ ..-+.|++|+|++|.+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcC
Confidence 45566777889999999986 665 34456666688999999999887 344444 6678899999999977
Q ss_pred cc-----cchhhhcCccCcEEEec
Q 037759 248 DH-----TADEFWKMSKLRYLNFG 266 (479)
Q Consensus 248 ~~-----lp~~~~~L~~L~~L~l~ 266 (479)
.. +-+.+..-+.|++|+++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CHHHHHHHHHHHhhCCceeEEECC
Confidence 54 33445555668888887
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.50 E-value=52 Score=24.55 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=25.2
Q ss_pred CCccCChhHHhcCcCCcEEecCCCcccccch-hhhcCccCcEEEec
Q 037759 222 SLKSLPSSLLNSLLNLYTLDMPFSYIDHTAD-EFWKMSKLRYLNFG 266 (479)
Q Consensus 222 ~l~~lp~~i~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~ 266 (479)
.++.+..+.|.++.+|+.+.+-.+ ++.+.. .|.++.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 455555555566666666666543 444432 35666666666665
Done!