BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037760
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 72 TVVWVANRYKPITDKNGVLTLSNNGSILLLNQERSTIWSSNSSRVLETAVVRLLDSGNLV 131
T VW +N P K L ++G+ ++ + E +++W+S+S R V+ L + GN+V
Sbjct: 38 TAVWSSNTDIP-GKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 132 LRDNVSRSSDEY 143
+ + S++ Y
Sbjct: 97 IYGSDIWSTNTY 108
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 72 TVVWVANRYKPITDKNGVLTLSNNGSILLLNQERSTIWSSNSSRVLETAVVRLLDSGNLV 131
T VW +N P K L ++G+ ++ + E +++W+S+S R V+ L + GN+V
Sbjct: 38 TAVWSSNTDIP-GKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 132 LRDNVSRSSDEY 143
+ + S++ Y
Sbjct: 97 IYRSDIWSTNTY 108
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 72 TVVWVANRYKPITDKNGVLTLSNNGSILLLNQERSTIWSSNSSRVLETAVVRLLDSGNLV 131
T VW N P K L ++G+ ++ + E ++W+S+S R V+ L + GN+V
Sbjct: 38 TAVWTTNTDIP-GKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 132 LRDNVSRSSDEY 143
+ + S++ Y
Sbjct: 97 IYGSDIWSTNTY 108
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 32 QSISDGETLVSSSLRFELGFFSPGNSNNRYLGIWYKSSPRTVVWVANRYKPIT------D 85
Q++S G+ L+S + RF+L GN + G VWVAN +P + +
Sbjct: 21 QTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNG--------ATVWVANEQQPFSSTIPLRN 72
Query: 86 KNGVLTLSNNGSILLLNQERSTIWSSNSSRVL------ETAVVRLLDSGNLVLRDNVSRS 139
K L L + R +W +++S T +V L D GN+VL D+++
Sbjct: 73 KKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLV-LQDDGNIVLVDSLA-- 129
Query: 140 SDEYMWQSFDYPSDTLLPG 158
+W P+ L+PG
Sbjct: 130 ----LWNG--TPAIPLVPG 142
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 140 SDEYMWQSFDYPSDTLLPG-MKLGWNLRTRFERYLTAWRNADDPTPGEF-SFRF-DISTM 196
SD ++Q+FD D + G K W R+ ERY+ + D PG + RF +
Sbjct: 220 SDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATFPGNYVKMRFLENHDN 279
Query: 197 AELVTVTGSKIEV----------RSGP--WNGQQFVG--IPMFFPR 228
A ++++ SK E R P +NGQ+F+ P F R
Sbjct: 280 ARMMSLMHSKAEAVNNLTWIFMQRGIPLIYNGQEFLAEHQPSLFDR 325
>pdb|3GHE|H Chain H, Crystal Structure Of Anti-Hiv-1 Fab 537-10d In Complex
With V3 Peptide Mn
Length = 233
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 32 QSISDGETLVSSSLRFELGFFSPGNSNNRYLGIWYKSSP-RTVVWVANRYKPITDKNGVL 90
Q + G LV L + G + N Y W + +P + + WVAN + DK V
Sbjct: 3 QLVQSGGGLVQPGGSLRLSCVASGFTFNNYWMSWVRQAPGKGLEWVANIKQDGNDKYYVD 62
Query: 91 TLSNNGSILLLNQERSTIWSSNSSRVLETAV 121
++ +I N + S NS R +TAV
Sbjct: 63 SVKGRFTISRDNAKNSLFLQMNSLRAEDTAV 93
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 72 TVVWVANRYKPITDKNGV-LTLSNNGSILLLNQERSTIWSSNSSRVLETAVVRLLDSGNL 130
T VW +N I K G L ++G+ ++ + E ++W+S+S R V+ L + GN+
Sbjct: 38 TSVWASN--TGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNV 95
Query: 131 VL 132
V+
Sbjct: 96 VI 97
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 28.5 bits (62), Expect = 8.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 72 TVVWVANRYKPITDKNGV-LTLSNNGSILLLNQERSTIWSSNSSRVLETAVVRLLDSGNL 130
T VW +N I K G L ++G+ ++ + E ++W+S+S R V+ L + GN+
Sbjct: 38 TSVWASN--TGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNV 95
Query: 131 VL 132
V+
Sbjct: 96 VI 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,400,197
Number of Sequences: 62578
Number of extensions: 619934
Number of successful extensions: 1134
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 15
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)