BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037761
(753 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 38/286 (13%)
Query: 55 ISFFETSPALS-PTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFIS 113
+SF T+P L+ ++P+F R +D+ AI +L+++ W V + +D + +
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172
Query: 114 FLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173
L L DI IS + KL R+ + + +A+++F
Sbjct: 173 DLTGVLYGEDIEISDTESFSNDP-----CTSVKKLKGNDVRIILGQFDQNMAAKVFCCAY 227
Query: 174 KNGMMSKGYTWIVTACL-----------SNSLNVLDSEVIDSMEGVLGVRSHLPKSKELG 222
+ M Y WI+ +NS L ++ +MEG +GV SK++
Sbjct: 228 EENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIK 287
Query: 223 L--------FDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKXXXXXXXXXX 274
++R + +K + P+ G +AYD I+ +AK +++
Sbjct: 288 TISGKTPQQYEREYNNKRSGVGPSK------FHG-YAYDGIWVIAKTLQRAMETLHASSR 340
Query: 275 XXXXXXESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQ 320
+ TD +G I+ N + T F G++G+ NG+
Sbjct: 341 HQRIQDFNYTD------HTLGRIILNAMNETNFFGVTGQVVFRNGE 380
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 51 QVPIISFFETSPALSPTE-HPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYG- 108
Q+P IS+ T+P LS + FF RV DS Q +A+ +++ W+ V + + +YG
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 109 AGFISFLVDELQENDIRISHMSKIPTSAEDFQIS-----KELSKLSTMQTRVFIVHMNTA 163
G SF + + I+ +IP +D I K+L L T +R ++ N
Sbjct: 201 KGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQL--LDTPNSRAVVIFANDE 258
Query: 164 LASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGL 223
++ A AK + W+ + + +N L D EG + ++ PK +
Sbjct: 259 DIKQILA-AAKRADQVGHFLWVGSDSWGSKINPLHQHE-DIAEGAITIQ---PKRATVEG 313
Query: 224 FDRRWKSK 231
FD + S+
Sbjct: 314 FDAYFTSR 321
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 51 QVPIISFFETSPALSPTE-HPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYG- 108
Q+P IS+ T+P LS + FF RV DS Q +A+ +++ W+ V + + +YG
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 109 AGFISFLVDELQENDIRISHMSKIPTSAEDFQIS-----KELSKLSTMQTRVFIVHMNTA 163
G SF + + I+ +IP +D I K+L L T +R ++ N
Sbjct: 201 KGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQL--LDTPNSRAVVIFANDE 258
Query: 164 LASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGL 223
++ A AK + W+ + + +N L D EG + ++ PK +
Sbjct: 259 DIKQILA-AAKRADQVGHFLWVGSDSWGSKINPLHQHE-DIAEGAITIQ---PKRATVEG 313
Query: 224 FDRRWKSK 231
FD + S+
Sbjct: 314 FDAYFTSR 321
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/467 (17%), Positives = 178/467 (38%), Gaps = 52/467 (11%)
Query: 66 PTE--HPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQEND 123
PT+ HPF I++ + A+ ++++ + W + +Y D++ G + ++D E
Sbjct: 93 PTDGTHPFVIQMRPDLK---GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKK 148
Query: 124 IRIS--HMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKG 181
+++ ++ I +D L + R I+ + + V G KG
Sbjct: 149 WQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG 208
Query: 182 YTWIVTACLSNSLNVLDSEVIDSMEG---VLGVRSHLPKSKELGLFDRRWKSKLHSMKPN 238
Y +I+ +L D +++ G V G + + F RW + P
Sbjct: 209 YHYIIA-----NLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 263
Query: 239 SSVTEINISGLWAYDTIFALAKA---VEKXXXXXXXXXXXXXXXXESTTDFGSLGFSRIG 295
+ I + YD + + +A + K +G G
Sbjct: 264 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQ------G 317
Query: 296 HILCNQILNTQFKGLSGEFHL-VNGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQTLDL 353
+ + Q +GLSG NG+ + I+ + G R +GYW+ + T D
Sbjct: 318 VEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDD 377
Query: 354 TSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCME 413
TS + K ++ + ++ +P + + Y G+C++
Sbjct: 378 TSGLEQKTVV--------------VTTILESPYVM-----MKANHAALAGNERYEGYCVD 418
Query: 414 IFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGT--YDELLYQIKLKKFDAVVGDISIVA 471
+ EI + G K +V A T ++ ++ ++ K D + ++I
Sbjct: 419 L---AAEIAKH-CGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITL 474
Query: 472 SRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALV 518
R + ++F+ P+ G+++++ + ++ ++ FL P +++W+ +V
Sbjct: 475 VREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV 521
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 52 VPIISFFETSPALS-PTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAG 110
+P I++ TS LS T +F+RV +D+ Q +A+ +++ ++W V ++ + NYG
Sbjct: 154 IPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYGES 213
Query: 111 FISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIV 158
+ D + I I+H KI ++A + K L KL++ + +V
Sbjct: 214 GMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKLLKKLTSHLPKARVV 261
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 51 QVPIISFFETSPALS-PTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGA 109
Q+P IS+ TS LS + + +F R D Q KA++ +L+ F+W V + + +YG
Sbjct: 140 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 199
Query: 110 GFISFLVDELQENDIRISHMSKIPTS----AEDFQISKELSKLSTMQTRVFIVHMNTALA 165
I E + +I I+ K+ S + D I + L K + RV ++ M + +
Sbjct: 200 TGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPN---ARVVVLFMRSDDS 256
Query: 166 SRLFALVAKNGMMSKGYTWIVT 187
L A ++ + +TW+ +
Sbjct: 257 RELIAAASR---ANASFTWVAS 275
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 51 QVPIISFFETSPALS-PTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGA 109
Q+P IS+ TS LS + + +F R D Q KA++ +L+ F+W V + + +YG
Sbjct: 141 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 200
Query: 110 GFISFLVDELQENDIRISHMSKIPTS----AEDFQISKELSKLSTMQTRVFIVHMNTALA 165
I E + +I I+ K+ S + D I + L K + RV ++ M + +
Sbjct: 201 TGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPN---ARVVVLFMRSDDS 257
Query: 166 SRLFALVAKNGMMSKGYTWIVT 187
L A + ++ +TW+ +
Sbjct: 258 RELIAAANR---VNASFTWVAS 276
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 52 VPIISFFETSPALS-PTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAG 110
+P I++ TS LS T + +F+RV +D+LQ +A+ +++ ++W V ++ + NYG
Sbjct: 153 IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGES 212
Query: 111 FISFLVDELQENDIRISHMSKIPTSA 136
+ + + + I+H KI ++A
Sbjct: 213 GMDAFKELAAQEGLSIAHSDKIYSNA 238
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 52 VPIISFFETSPALS-PTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAG 110
+P I++ TS LS T + +F+RV +D+LQ +A+ +++ ++W V ++ + NYG
Sbjct: 148 IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGES 207
Query: 111 FISFLVDELQENDIRISHMSKIPTSA 136
+ + + + I+H KI ++A
Sbjct: 208 GMDAFKELAAQEGLCIAHSDKIYSNA 233
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 404 KTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAV 463
K GFC++I L+ + +G LV ++ G ++ ++ ++ ++ D
Sbjct: 56 KRCCKGFCIDI----LKRLAHTIGFSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMA 111
Query: 464 VGDISIVASRTDYVEFTLPYSESGVTMLV 492
+G ++I R++ V+F++P+ E+G++++V
Sbjct: 112 IGSLTINEERSEIVDFSVPFVETGISVMV 140
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 448 YDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTML 491
+D L+ +KL KFDA+ G +I +R V+FT PY + V+ +
Sbjct: 50 WDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYYTNSVSFI 93
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 447 TYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRH 500
++D L+ ++ KKFDAV+ + + R V F+ PY E G++ +V ++ H
Sbjct: 53 SFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYE-GLSAVVVTRKGAYH 105
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 142 SKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSE 200
SK ++L +Q+ + +++ A+ +F + G+ GYTWIV + ++ + + SE
Sbjct: 183 SKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSE 241
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 142 SKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSE 200
SK ++L +Q+ + +++ A+ +F + G+ GYTWIV + ++ + + SE
Sbjct: 184 SKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSE 242
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 404 KTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAV 463
K GFC++I V+ + + + N G E++YQ +
Sbjct: 54 KKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAV----MA 109
Query: 464 VGDISIVASRTDYVEFTLPYSESGVTMLV 492
VG ++I R++ V+F++P+ E+G++++V
Sbjct: 110 VGSLTINEERSEVVDFSVPFVETGISVMV 138
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 69 HPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISH 128
H F+R S Q +++ ++W+ ++L+ D + G L L+E + +
Sbjct: 114 HLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEK 173
Query: 129 MSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIV 186
+ + ++ ++ L + ++ RV I+ + A+ ++ A M GY W+V
Sbjct: 174 VLQFDPGTKN--VTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLV 229
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 113/306 (36%), Gaps = 28/306 (9%)
Query: 66 PTE--HPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQEND 123
PT+ HPF I++ + A+ ++++ + W + +Y D++ G + ++D E
Sbjct: 93 PTDGTHPFVIQMRPDLK---GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKK 148
Query: 124 IRIS--HMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKG 181
+++ ++ I +D L + R I+ + + V G KG
Sbjct: 149 WQVTAINVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG 208
Query: 182 YTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGL---FDRRWKSKLHSMKPN 238
Y +I+ +L D +++ G V + L F RW + P
Sbjct: 209 YHYIIA-----NLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 263
Query: 239 SSVTEINISGLWAYDTIFALAKA---VEKXXXXXXXXXXXXXXXXESTTDFGSLGFSRIG 295
+ T I + YD + + +A + K +G G
Sbjct: 264 AHTTTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQ------G 317
Query: 296 HILCNQILNTQFKGLSGEFHL-VNGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQTL-D 352
+ + Q +GLSG NG+ + I+ + G R +GYW+ + TL +
Sbjct: 318 VEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTE 377
Query: 353 LTSKND 358
L S ND
Sbjct: 378 LPSGND 383
>pdb|2LIV|A Chain A, Periplasmic Binding Protein Structure And Function.
Refined X-Ray Structures Of The
LeucineISOLEUCINEVALINE-Binding Protein And Its Complex
With Leucine
Length = 344
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 54 IISFFETSPALSPTEHPFFIRVTQNDSLQ-VKAISAVLQNFSWHEVVLMYEDTNYGAGFI 112
+I+ T+P L+ + +R T DS Q A +L+ + ++++ YG G
Sbjct: 96 MITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLA 155
Query: 113 SFLVDELQENDIRISHMSKIPTSAEDF 139
+ D L++ + + I +DF
Sbjct: 156 RAVQDGLKKGNANVVFFDGITAGEKDF 182
>pdb|1Z15|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein In Superopen Form
pdb|1Z16|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein With Bound Leucine
pdb|1Z17|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Ligand Isoleucine
pdb|1Z18|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Valine
Length = 344
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 54 IISFFETSPALSPTEHPFFIRVTQNDSLQ-VKAISAVLQNFSWHEVVLMYEDTNYGAGFI 112
+I+ T+P L+ + +R T DS Q A +L+ + ++++ YG G
Sbjct: 96 MITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLA 155
Query: 113 SFLVDELQENDIRISHMSKIPTSAEDF 139
+ D L++ + + I +DF
Sbjct: 156 RAVQDGLKKGNANVVFFDGITAGEKDF 182
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 403 NKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDA 462
NK +GF ++++ + + ++G I +L+ Y + EL+ IK K +
Sbjct: 19 NKGELSGFSIDLWRS----IATQIG--IESKLIEY--------SSVPELISAIKDNKVNL 64
Query: 463 VVGDISIVASRTDYVEFTLPYSESGVTMLV 492
+ ISI A R +F+LP SG+ ++V
Sbjct: 65 GIAAISITAEREQNFDFSLPIFASGLQIMV 94
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 409 GFCMEIF-------NATLEI---VEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458
GFC+++ N T E+ + K G + E N ++ ++ ++
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQ--------ERVNNSNKKEWNGMMGELLSG 116
Query: 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLV 492
+ D +V ++I R Y+EF+ P+ G+T+LV
Sbjct: 117 QADMIVAPLTINTERAQYIEFSKPFKYQGLTILV 150
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKE 144
A+ ++L ++ W+ V +Y DT+ G + ++++ +N +S + + D +
Sbjct: 120 ALLSLLDHYEWNCFVFLY-DTDRGYSILQAIMEKAGQNGWHVSAICV--ENFNDVSYRQL 176
Query: 145 LSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVT 187
L +L Q + F++ + + G KGY +I+
Sbjct: 177 LEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIA 219
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn
Length = 570
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 42 FLVELGEKAQVPIISFFETSPALS-------PTEHPF-FIRVTQNDSLQVKAISAVLQNF 93
F ++ G + +P SPA S TE+ F FI+V Q+D + A+ +V+++
Sbjct: 444 FYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDI 503
Query: 94 SWHEVVLMYEDTNYGAGFISF 114
+ +L E + G ++
Sbjct: 504 QNTQCLLNVEHLSAGCPHVTL 524
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 409 GFCMEIF-------NATLEI---VEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458
GFC+++ N T E+ + K G + E N ++ ++ ++
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQ--------ERVNNSNKKEWNGMMGELLSG 116
Query: 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLV 492
+ D +V ++I R Y+EF+ P+ G+T+LV
Sbjct: 117 QADMIVAPLTINNERAQYIEFSKPFKYQGLTILV 150
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 393 FLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVP-YEDENGEMAGTYDEL 451
F+ V E+ Y GF +++ +A + LG + P ++ + + GT++ L
Sbjct: 15 FVXVSENVLGKPKKYQGFSIDVLDA----LSNYLGFNYEIYVAPDHKYGSPQEDGTWNGL 70
Query: 452 LYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLV 492
+ ++ K+ D + ++I R + V+FT Y + V +L+
Sbjct: 71 VGELVFKRADIGISALTITPDRENVVDFTTRYXDYSVGVLL 111
>pdb|2O4X|A Chain A, Crystal Structure Of Human P100 Tudor Domain
Length = 217
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 42 FLVELGEKAQVPIISFFETSPALS-------PTEHPF-FIRVTQNDSLQVKAISAVLQNF 93
F ++ G + +P SPA S TE+ F FI+V Q+D + A+ +V+++
Sbjct: 84 FYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDI 143
Query: 94 SWHEVVLMYEDTNYGAGFISF 114
+ +L E + G ++
Sbjct: 144 QNTQCLLNVEHLSAGCPHVTL 164
>pdb|2HQX|A Chain A, Crystal Structure Of Human P100 Tudor Domain Conserved
Region
pdb|2HQX|B Chain B, Crystal Structure Of Human P100 Tudor Domain Conserved
Region
pdb|2HQE|A Chain A, Crystal Structure Of Human P100 Tudor Domain: Large
Fragment
pdb|2HQE|B Chain B, Crystal Structure Of Human P100 Tudor Domain: Large
Fragment
Length = 246
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 42 FLVELGEKAQVPIISFFETSPALS-------PTEHPF-FIRVTQNDSLQVKAISAVLQNF 93
F ++ G + +P SPA S TE+ F FI+V Q+D + A+ +V+++
Sbjct: 98 FYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDI 157
Query: 94 SWHEVVLMYEDTNYGAGFISF 114
+ +L E + G ++
Sbjct: 158 QNTQCLLNVEHLSAGCPHVTL 178
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R14me2s
pdb|3OMG|B Chain B, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R14me2s
pdb|3OMC|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R4me2s
pdb|3OMC|B Chain B, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R4me2s
Length = 261
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 42 FLVELGEKAQVPIISFFETSPALS-------PTEHPF-FIRVTQNDSLQVKAISAVLQNF 93
F ++ G + +P SPA S TE+ F FI+V Q+D + A+ +V+++
Sbjct: 113 FYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDI 172
Query: 94 SWHEVVLMYEDTNYGAGFISF 114
+ +L E + G ++
Sbjct: 173 QNTQCLLNVEHLSAGCPHVTL 193
>pdb|3DEL|B Chain B, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|C Chain C, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|D Chain D, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|F Chain F, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
Length = 242
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 447 TYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPV-KRDNRHNM 502
++D L+ +K + DAV+ +SI SR + +PY + LV V K +N+H +
Sbjct: 58 SFDALILNLKQHRIDAVITGMSITPSRLKEI-LMIPYYGEEIKHLVLVFKGENKHPL 113
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 400 GDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKK 459
G+ +TG ++++ A E +K + Y +N AG + + +
Sbjct: 20 GEGKNAAFTGISLDVWRAVAE--SQKWNSE-------YVRQNSISAG-----ITAVAEGE 65
Query: 460 FDAVVGDISIVASRT--DYVEFTLPYSESGVTMLVP 493
D ++G IS+ R + + FT PY SG+ +L+P
Sbjct: 66 LDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 400 GDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKK 459
G+ +TG ++++ A E +K + Y +N AG + + +
Sbjct: 20 GEGKNAAFTGISLDVWRAVAE--SQKWNSE-------YVRQNSISAG-----ITAVAEGE 65
Query: 460 FDAVVGDISIVASRT--DYVEFTLPYSESGVTMLVP 493
D ++G IS+ R + + FT PY SG+ +L+P
Sbjct: 66 LDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 393 FLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVP-YEDENGEMAGTYDEL 451
F+ V E+ Y GF +++ +A + LG + P ++ + + GT++ L
Sbjct: 15 FVMVSENVLGKPKKYQGFSIDVLDA----LSNYLGFNYEIYVAPDHKYGSPQEDGTWNGL 70
Query: 452 LYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLV 492
+ ++ K+ D + ++I R + V+FT Y + V +L+
Sbjct: 71 VGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLL 111
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 407 YTGFCMEIFNATLEIVEEKLGMKIHPQLVP-----YEDENGEMAGTYDELLYQIKLKKFD 461
+ G+C+++ I LG +LV +D+ G+ G EL+ K D
Sbjct: 32 FEGYCIDLLKELAHI----LGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDH----KAD 83
Query: 462 AVVGDISIVASRTDYVEFTLPYSESGVTML 491
V ++I R ++F+ P+ GV++L
Sbjct: 84 LAVAPLTITHVREKAIDFSKPFMTLGVSIL 113
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 120/296 (40%), Gaps = 28/296 (9%)
Query: 64 LSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQEND 123
+S + F++ + + S +AI ++Q F W V ++Y+D+ G + L+ +
Sbjct: 107 VSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST-GLIRLQELIKAPSRYN 165
Query: 124 IRISHMSKIPTSAEDFQ-ISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGY 182
+R+ + ++P +D + + KE+ + I + +A+ + GMM++ Y
Sbjct: 166 LRLK-IRQLPADTKDAKPLLKEMKRGKEFHV---IFDCSHEMAAGILKQALAMGMMTEYY 221
Query: 183 TWIVTACLSNSLNVLDSEVID-SMEGVLGVRSHLPKSKELGLFDRRWK-SKLHS-MKPNS 239
+I T L LD E S + G R ++ ++ +W +L + KP+S
Sbjct: 222 HYIFTTL---DLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDS 278
Query: 240 SVTE--INISGLWAYDTIFALAKAVEKXXXXXXXXXXXXXXXXESTTDFGSLGFSRIGHI 297
+ + + YD + ++ AV++ S+ R G
Sbjct: 279 GLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV-----------SSLQCNRHKPWRFGTR 327
Query: 298 LCNQILNTQFKGLSGE--FHLVNGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQT 350
+ I ++GL+G F+ NG +++++ G +G W GL T
Sbjct: 328 FMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMT 383
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 407 YTGFCMEIFNATLEIVEEKLGMKIHPQLVP-----YEDENGEMAGTYDELLYQIKLKKFD 461
+ G+C+++ I LG +LV +D+ G+ G EL+ K D
Sbjct: 34 FEGYCIDLLKELAHI----LGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDH----KAD 85
Query: 462 AVVGDISIVASRTDYVEFTLPYSESGVTML 491
V ++I R ++F+ P+ GV++L
Sbjct: 86 LAVAPLTITHVREKAIDFSKPFMTLGVSIL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,405,361
Number of Sequences: 62578
Number of extensions: 806001
Number of successful extensions: 1614
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1582
Number of HSP's gapped (non-prelim): 46
length of query: 753
length of database: 14,973,337
effective HSP length: 106
effective length of query: 647
effective length of database: 8,340,069
effective search space: 5396024643
effective search space used: 5396024643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)