Query 037761
Match_columns 753
No_of_seqs 334 out of 3332
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 9E-83 3.1E-87 757.2 52.1 683 8-737 41-811 (823)
2 3o21_A Glutamate receptor 3; p 100.0 6.3E-41 2.2E-45 360.8 34.4 325 8-349 50-379 (389)
3 3hsy_A Glutamate receptor 2; l 100.0 7.5E-41 2.6E-45 359.0 31.3 324 9-348 43-372 (376)
4 4f11_A Gamma-aminobutyric acid 100.0 6.4E-41 2.2E-45 367.3 28.9 334 8-368 65-421 (433)
5 3sm9_A Mglur3, metabotropic gl 100.0 1.2E-40 4E-45 367.4 29.7 334 8-368 73-478 (479)
6 3ks9_A Mglur1, metabotropic gl 100.0 1.1E-39 3.6E-44 361.4 32.1 344 8-374 81-496 (496)
7 2e4u_A Metabotropic glutamate 100.0 1.9E-39 6.7E-44 365.6 33.5 352 8-392 74-495 (555)
8 3saj_A Glutamate receptor 1; r 100.0 3.3E-39 1.1E-43 347.5 29.0 327 4-348 43-375 (384)
9 4gpa_A Glutamate receptor 4; P 100.0 1.1E-37 3.7E-42 336.9 36.6 324 8-348 51-376 (389)
10 3h6g_A Glutamate receptor, ion 100.0 4.6E-38 1.6E-42 340.3 32.4 320 10-348 55-381 (395)
11 3qek_A NMDA glutamate receptor 100.0 3.2E-38 1.1E-42 340.0 30.1 309 8-367 46-384 (384)
12 3mq4_A Mglur7, metabotropic gl 100.0 1.7E-39 5.9E-44 359.1 18.3 335 8-365 76-480 (481)
13 1dp4_A Atrial natriuretic pept 100.0 2.7E-38 9.2E-43 346.9 27.7 330 9-374 59-419 (435)
14 3om0_A Glutamate receptor, ion 100.0 6.4E-38 2.2E-42 338.7 29.8 323 8-348 51-379 (393)
15 1jdp_A NPR-C, atrial natriuret 100.0 9.7E-38 3.3E-42 342.8 31.3 328 8-368 63-413 (441)
16 3qel_B Glutamate [NMDA] recept 100.0 1E-36 3.6E-41 323.5 21.8 308 8-366 44-363 (364)
17 4f06_A Extracellular ligand-bi 100.0 1.6E-32 5.4E-37 293.8 27.2 296 3-333 46-347 (371)
18 3i09_A Periplasmic branched-ch 100.0 4.8E-32 1.7E-36 290.9 26.5 292 4-335 47-342 (375)
19 3td9_A Branched chain amino ac 100.0 6E-32 2E-36 289.2 27.0 300 3-345 56-364 (366)
20 3h5l_A Putative branched-chain 100.0 9.1E-32 3.1E-36 293.2 25.2 299 3-335 57-387 (419)
21 3n0w_A ABC branched chain amin 100.0 9E-32 3.1E-36 289.2 24.6 294 3-335 48-346 (379)
22 3i45_A Twin-arginine transloca 100.0 5.8E-32 2E-36 291.6 22.9 304 4-346 49-362 (387)
23 4eyg_A Twin-arginine transloca 100.0 3.6E-31 1.2E-35 283.4 25.2 304 3-345 47-361 (368)
24 4evq_A Putative ABC transporte 100.0 1.3E-30 4.6E-35 279.7 26.4 299 4-342 58-362 (375)
25 3hut_A Putative branched-chain 100.0 1.8E-30 6.1E-35 276.9 27.0 298 4-342 48-352 (358)
26 3ipc_A ABC transporter, substr 100.0 5.8E-31 2E-35 280.4 22.5 298 4-343 46-351 (356)
27 1usg_A Leucine-specific bindin 100.0 2.6E-30 8.9E-35 274.2 24.1 291 4-335 46-341 (346)
28 4gnr_A ABC transporter substra 100.0 4.5E-30 1.5E-34 273.1 25.5 289 4-338 51-348 (353)
29 3n0x_A Possible substrate bind 100.0 1.9E-30 6.5E-35 278.2 19.3 289 3-335 48-348 (374)
30 3lop_A Substrate binding perip 100.0 1.8E-29 6.1E-34 269.7 23.0 293 4-335 49-352 (364)
31 3lkb_A Probable branched-chain 100.0 2.1E-29 7.3E-34 272.0 23.0 306 4-347 51-378 (392)
32 3eaf_A ABC transporter, substr 100.0 9.3E-29 3.2E-33 266.8 23.6 303 4-345 52-373 (391)
33 3sg0_A Extracellular ligand-bi 100.0 1.2E-28 4E-33 265.7 19.6 300 4-335 65-381 (386)
34 3snr_A Extracellular ligand-bi 100.0 8.4E-28 2.9E-32 256.6 25.0 298 4-335 45-357 (362)
35 1pea_A Amidase operon; gene re 100.0 1.2E-26 4E-31 249.8 28.5 300 4-340 51-356 (385)
36 1yae_A Glutamate receptor, ion 99.9 1.4E-26 4.7E-31 241.4 16.2 266 378-697 13-297 (312)
37 4h5g_A Amino acid ABC superfam 99.9 1.7E-26 5.8E-31 231.5 15.3 223 379-687 13-238 (243)
38 4gvo_A LMO2349 protein; struct 99.9 1.7E-25 5.8E-30 224.2 16.1 223 379-688 10-237 (243)
39 1pb7_A N-methyl-D-aspartate re 99.9 3.2E-25 1.1E-29 228.4 12.2 235 379-692 42-291 (292)
40 2rc8_A Glutamate [NMDA] recept 99.9 4.2E-25 1.4E-29 227.9 12.7 215 406-692 67-293 (294)
41 3k4u_A Binding component of AB 99.9 2E-24 7E-29 216.7 17.2 227 379-692 6-234 (245)
42 3g3k_A Glutamate receptor, ion 99.9 1.7E-24 5.7E-29 219.3 15.4 235 379-692 5-258 (259)
43 2h4a_A YRAM (HI1655); perplasm 99.9 1.1E-23 3.6E-28 218.4 18.9 274 3-335 34-313 (325)
44 3kzg_A Arginine 3RD transport 99.9 1.1E-23 3.6E-28 210.3 17.7 222 379-690 4-234 (237)
45 2a5s_A N-methyl-D-aspartate re 99.9 6.5E-24 2.2E-28 217.8 15.7 213 405-692 55-283 (284)
46 3ckm_A YRAM (HI1655), LPOA; pe 99.9 1.8E-23 6.2E-28 219.1 18.9 278 3-339 36-320 (327)
47 4f3p_A Glutamine-binding perip 99.9 1.9E-23 6.5E-28 210.1 18.3 219 379-688 25-244 (249)
48 3kbr_A Cyclohexadienyl dehydra 99.9 8.9E-24 3E-28 211.1 15.1 220 379-687 16-238 (239)
49 3i6v_A Periplasmic His/Glu/Gln 99.9 3.5E-23 1.2E-27 205.7 17.6 217 379-693 6-224 (232)
50 3hv1_A Polar amino acid ABC up 99.9 3.2E-23 1.1E-27 211.0 17.5 221 379-688 22-250 (268)
51 3del_B Arginine binding protei 99.9 5.2E-23 1.8E-27 205.9 17.6 216 379-688 12-234 (242)
52 3tql_A Arginine-binding protei 99.9 6.6E-23 2.3E-27 202.7 17.0 217 379-685 3-227 (227)
53 3h7m_A Sensor protein; histidi 99.9 9.3E-23 3.2E-27 202.8 17.4 218 379-687 12-231 (234)
54 3mpk_A Virulence sensor protei 99.9 6.4E-23 2.2E-27 208.6 16.2 218 379-687 33-253 (267)
55 2v3u_A Glutamate receptor delt 99.9 1.1E-22 3.6E-27 206.7 17.7 239 379-692 4-264 (265)
56 1mqi_A Glutamate receptor 2; G 99.9 1.2E-22 4E-27 206.2 17.8 237 379-692 5-262 (263)
57 1wdn_A GLNBP, glutamine bindin 99.9 2.4E-22 8.2E-27 198.5 18.2 219 379-688 4-224 (226)
58 1ii5_A SLR1257 protein; membra 99.9 3.8E-22 1.3E-26 198.1 19.3 221 379-688 5-228 (233)
59 1lst_A Lysine, arginine, ornit 99.9 2.3E-22 7.9E-27 200.7 17.3 222 379-688 5-234 (239)
60 2y7i_A STM4351; arginine-bindi 99.9 6.1E-22 2.1E-26 196.1 18.6 215 379-686 7-228 (229)
61 4dz1_A DALS D-alanine transpor 99.9 4.3E-22 1.5E-26 201.5 17.6 219 379-687 30-254 (259)
62 4eq9_A ABC transporter substra 99.9 3.7E-22 1.3E-26 200.1 16.7 221 379-688 9-237 (246)
63 2iee_A ORF2, probable ABC tran 99.9 5.7E-22 1.9E-26 202.1 14.9 216 379-686 22-246 (271)
64 2vha_A Periplasmic binding tra 99.9 1.8E-21 6.1E-26 200.2 17.0 228 379-689 18-251 (287)
65 4i62_A Amino acid ABC transpor 99.9 4.3E-21 1.5E-25 195.1 18.4 219 379-687 40-265 (269)
66 2q88_A EHUB, putative ABC tran 99.9 2.1E-21 7.3E-26 196.1 16.0 221 379-685 14-239 (257)
67 2pyy_A Ionotropic glutamate re 99.9 3.7E-21 1.3E-25 190.3 16.0 220 379-688 4-224 (228)
68 2pvu_A ARTJ; basic amino acid 99.9 1.2E-20 4E-25 192.5 18.8 219 379-688 43-264 (272)
69 2yln_A Putative ABC transporte 99.8 1.2E-20 3.9E-25 193.6 17.7 217 379-688 58-279 (283)
70 3qax_A Probable ABC transporte 99.8 2E-20 7E-25 190.0 18.8 217 379-688 32-255 (268)
71 1xt8_A Putative amino-acid tra 99.8 8.5E-21 2.9E-25 195.7 15.9 217 379-687 45-266 (292)
72 2yjp_A Putative ABC transporte 99.8 1.1E-20 3.9E-25 194.5 16.8 217 379-687 56-277 (291)
73 2v25_A Major cell-binding fact 99.7 6.1E-18 2.1E-22 170.6 9.8 213 379-685 39-258 (259)
74 3n5l_A Binding protein compone 98.9 3E-09 1E-13 109.4 10.0 211 379-684 5-241 (310)
75 2ozz_A Hypothetical protein YH 98.9 1.2E-08 3.9E-13 97.7 12.0 170 404-668 27-211 (231)
76 3p7i_A PHND, subunit of alkylp 98.8 2.1E-08 7.2E-13 103.3 13.4 211 379-684 15-250 (321)
77 2x26_A Periplasmic aliphatic s 98.2 1.3E-05 4.3E-10 82.3 14.8 184 425-686 28-232 (308)
78 3uif_A Sulfonate ABC transport 98.1 3.6E-05 1.2E-09 80.4 14.1 157 447-670 56-228 (348)
79 3ksx_A Nitrate transport prote 98.1 5E-05 1.7E-09 78.5 15.0 155 425-656 54-219 (324)
80 3qsl_A Putative exported prote 98.0 6.8E-05 2.3E-09 78.1 13.8 135 425-633 61-205 (346)
81 3ix1_A N-formyl-4-amino-5-amin 97.9 3.6E-05 1.2E-09 78.7 10.1 137 405-621 15-158 (302)
82 3brq_A HTH-type transcriptiona 97.9 0.00015 5.3E-09 73.5 14.9 170 8-186 59-233 (296)
83 2qu7_A Putative transcriptiona 97.9 0.0001 3.6E-09 74.5 13.4 168 8-186 45-220 (288)
84 2h3h_A Sugar ABC transporter, 97.9 0.00042 1.4E-08 71.0 17.9 171 8-188 39-216 (313)
85 1dbq_A Purine repressor; trans 97.8 0.00042 1.4E-08 70.0 17.0 171 8-186 45-220 (289)
86 3un6_A Hypothetical protein sa 97.8 5E-05 1.7E-09 79.1 10.0 185 425-687 79-284 (341)
87 2f5x_A BUGD; periplasmic bindi 97.8 0.00055 1.9E-08 69.5 17.0 120 557-684 122-275 (312)
88 2h0a_A TTHA0807, transcription 97.8 0.00013 4.3E-09 73.3 11.8 169 8-187 37-214 (276)
89 3rot_A ABC sugar transporter, 97.7 0.00053 1.8E-08 69.6 15.6 170 10-186 45-222 (297)
90 3ksm_A ABC-type sugar transpor 97.7 0.0009 3.1E-08 66.9 17.1 172 8-188 40-221 (276)
91 2qpq_A Protein BUG27; alpha/be 97.7 0.00057 1.9E-08 69.2 14.8 120 557-684 113-266 (301)
92 2dvz_A BUGE, putative exported 97.7 0.00068 2.3E-08 68.9 15.4 120 557-684 126-279 (314)
93 2rjo_A Twin-arginine transloca 97.7 0.0016 5.4E-08 67.3 18.2 167 8-178 43-222 (332)
94 3h75_A Periplasmic sugar-bindi 97.6 0.0017 6E-08 67.5 18.5 177 8-186 42-238 (350)
95 3dbi_A Sugar-binding transcrip 97.6 0.00053 1.8E-08 71.1 14.2 171 8-186 101-275 (338)
96 3gv0_A Transcriptional regulat 97.6 0.0013 4.5E-08 66.3 16.5 162 17-186 56-221 (288)
97 2o20_A Catabolite control prot 97.6 0.00069 2.4E-08 70.0 14.6 170 8-186 101-272 (332)
98 3d8u_A PURR transcriptional re 97.6 0.00097 3.3E-08 66.7 15.2 170 8-186 41-214 (275)
99 2fep_A Catabolite control prot 97.6 0.0011 3.7E-08 67.0 15.5 170 8-186 54-228 (289)
100 1tjy_A Sugar transport protein 97.6 0.003 1E-07 64.6 19.1 171 8-188 42-222 (316)
101 3g1w_A Sugar ABC transporter; 97.6 0.0018 6E-08 65.9 17.2 173 8-188 43-221 (305)
102 2iks_A DNA-binding transcripti 97.6 0.0019 6.5E-08 65.3 16.9 169 8-186 58-230 (293)
103 3brs_A Periplasmic binding pro 97.6 0.0021 7.2E-08 64.7 17.3 161 9-178 48-215 (289)
104 3k4h_A Putative transcriptiona 97.6 0.001 3.4E-08 67.3 14.8 175 5-186 47-225 (292)
105 3o74_A Fructose transport syst 97.5 0.002 6.9E-08 64.2 16.6 170 8-188 40-215 (272)
106 2rgy_A Transcriptional regulat 97.5 0.00061 2.1E-08 68.9 12.8 169 9-186 47-222 (290)
107 3l49_A ABC sugar (ribose) tran 97.5 0.0013 4.3E-08 66.4 15.2 162 8-178 43-216 (291)
108 2fn9_A Ribose ABC transporter, 97.5 0.0024 8.2E-08 64.4 17.2 161 8-177 40-215 (290)
109 3c3k_A Alanine racemase; struc 97.5 0.0013 4.5E-08 66.2 14.9 166 8-187 46-218 (285)
110 3d02_A Putative LACI-type tran 97.5 0.0017 5.8E-08 65.9 15.8 171 8-187 43-222 (303)
111 2fvy_A D-galactose-binding per 97.5 0.0024 8.3E-08 65.0 16.6 171 4-176 36-226 (309)
112 3hcw_A Maltose operon transcri 97.5 0.0038 1.3E-07 63.1 18.0 166 11-186 53-225 (295)
113 3egc_A Putative ribose operon 97.5 0.001 3.6E-08 67.1 13.7 170 8-186 46-219 (291)
114 2hsg_A Glucose-resistance amyl 97.4 0.00063 2.1E-08 70.3 11.6 168 9-185 99-271 (332)
115 3clk_A Transcription regulator 97.4 0.00063 2.2E-08 68.8 11.2 168 9-186 48-218 (290)
116 3ctp_A Periplasmic binding pro 97.4 0.00084 2.9E-08 69.3 12.2 165 8-187 98-265 (330)
117 1qpz_A PURA, protein (purine n 97.4 0.0032 1.1E-07 65.2 16.7 171 8-186 96-271 (340)
118 3bbl_A Regulatory protein of L 97.4 0.0013 4.5E-08 66.2 13.5 168 9-185 47-220 (287)
119 2vk2_A YTFQ, ABC transporter p 97.4 0.0049 1.7E-07 62.6 17.8 173 8-186 40-224 (306)
120 2x7x_A Sensor protein; transfe 97.4 0.0044 1.5E-07 63.7 17.3 171 8-188 44-222 (325)
121 2ioy_A Periplasmic sugar-bindi 97.4 0.012 4.2E-07 58.8 20.3 170 8-188 39-216 (283)
122 3l6u_A ABC-type sugar transpor 97.4 0.0047 1.6E-07 62.3 17.2 162 8-178 46-220 (293)
123 3kke_A LACI family transcripti 97.4 0.0025 8.5E-08 64.8 15.0 167 8-185 53-229 (303)
124 3o1i_D Periplasmic protein TOR 97.3 0.0016 5.5E-08 66.1 13.1 162 11-178 48-218 (304)
125 3gyb_A Transcriptional regulat 97.3 0.00067 2.3E-08 68.1 9.5 163 11-186 45-209 (280)
126 4ddd_A Immunogenic protein; ss 97.2 0.00082 2.8E-08 69.1 9.4 133 414-623 48-203 (327)
127 3qk7_A Transcriptional regulat 97.2 0.0028 9.4E-08 64.1 13.0 160 19-186 57-220 (294)
128 3k9c_A Transcriptional regulat 97.2 0.0061 2.1E-07 61.3 15.4 161 15-186 55-218 (289)
129 3e3m_A Transcriptional regulat 97.2 0.011 3.6E-07 61.6 17.3 171 8-187 108-284 (355)
130 3kjx_A Transcriptional regulat 97.2 0.0035 1.2E-07 65.0 13.4 171 8-187 106-281 (344)
131 3gbv_A Putative LACI-family tr 97.1 0.0021 7.2E-08 65.2 11.4 171 8-188 51-232 (304)
132 8abp_A L-arabinose-binding pro 97.1 0.0047 1.6E-07 62.7 13.9 179 4-186 35-229 (306)
133 2x7q_A Ca3427, possible thiami 97.1 0.0026 9E-08 65.2 11.9 107 558-674 112-237 (321)
134 3tb6_A Arabinose metabolism tr 97.1 0.0029 1E-07 63.9 12.1 172 8-187 53-235 (298)
135 3jy6_A Transcriptional regulat 97.1 0.013 4.5E-07 58.3 16.7 167 8-187 45-215 (276)
136 3lft_A Uncharacterized protein 97.1 0.013 4.3E-07 59.2 16.8 158 8-177 44-210 (295)
137 3m9w_A D-xylose-binding peripl 97.0 0.018 6E-07 58.6 17.3 163 8-178 40-213 (313)
138 2qh8_A Uncharacterized protein 97.0 0.0075 2.6E-07 61.2 13.9 144 8-162 51-203 (302)
139 3bil_A Probable LACI-family tr 97.0 0.012 4E-07 61.1 15.2 168 8-186 104-274 (348)
140 1jx6_A LUXP protein; protein-l 97.0 0.01 3.6E-07 61.3 14.8 164 10-177 88-258 (342)
141 3cs3_A Sugar-binding transcrip 97.0 0.012 4.1E-07 58.7 14.8 150 27-187 57-211 (277)
142 3h5o_A Transcriptional regulat 96.9 0.011 3.8E-07 61.0 14.3 170 8-187 100-273 (339)
143 3g85_A Transcriptional regulat 96.9 0.0066 2.3E-07 61.0 12.3 153 25-187 66-222 (289)
144 3hs3_A Ribose operon repressor 96.9 0.0083 2.9E-07 59.9 12.9 159 8-187 49-212 (277)
145 1zbm_A Hypothetical protein AF 96.8 0.0075 2.6E-07 60.4 11.8 100 562-674 99-211 (280)
146 1byk_A Protein (trehalose oper 96.8 0.03 1E-06 54.9 16.0 163 8-188 40-205 (255)
147 2dri_A D-ribose-binding protei 96.8 0.063 2.1E-06 53.1 18.3 161 8-177 39-206 (271)
148 3huu_A Transcription regulator 96.8 0.016 5.4E-07 58.8 14.1 164 10-186 67-235 (305)
149 3ixl_A Amdase, arylmalonate de 96.7 0.015 5E-07 56.4 12.7 119 16-163 56-191 (240)
150 2g29_A Nitrate transport prote 96.7 0.0063 2.2E-07 64.9 11.1 175 425-672 59-272 (417)
151 3e61_A Putative transcriptiona 96.7 0.01 3.5E-07 59.1 12.0 162 8-187 46-211 (277)
152 1gud_A ALBP, D-allose-binding 96.6 0.16 5.5E-06 50.7 20.3 175 9-188 42-227 (288)
153 3jvd_A Transcriptional regulat 96.5 0.037 1.3E-06 56.8 15.0 157 12-186 105-264 (333)
154 2fqx_A Membrane lipoprotein TM 96.5 0.048 1.6E-06 55.6 15.4 164 14-187 50-221 (318)
155 3uug_A Multiple sugar-binding 96.4 0.04 1.4E-06 56.4 14.3 168 8-181 41-232 (330)
156 3miz_A Putative transcriptiona 96.3 0.0025 8.5E-08 64.7 4.8 168 8-186 52-230 (301)
157 1jye_A Lactose operon represso 96.3 0.063 2.2E-06 55.5 15.6 163 12-187 104-272 (349)
158 2zzv_A ABC transporter, solute 96.2 0.092 3.1E-06 54.5 16.0 163 414-626 51-222 (361)
159 1us5_A Putative GLUR0 ligand b 96.2 0.035 1.2E-06 56.4 12.3 133 414-623 35-188 (314)
160 3ho7_A OXYR; beta-alpha-barrel 95.9 0.075 2.6E-06 50.7 12.9 181 410-673 25-213 (232)
161 3lkv_A Uncharacterized conserv 95.9 0.097 3.3E-06 52.8 14.1 145 8-163 51-204 (302)
162 3jv9_A OXYR, transcriptional r 95.9 0.2 6.8E-06 47.0 15.7 180 410-672 18-208 (219)
163 4ab5_A Transcriptional regulat 95.8 0.093 3.2E-06 49.6 12.7 183 409-674 21-209 (222)
164 4fe7_A Xylose operon regulator 95.7 0.1 3.6E-06 55.3 13.8 156 25-186 74-236 (412)
165 3h5t_A Transcriptional regulat 95.6 0.04 1.4E-06 57.4 9.8 159 20-186 121-301 (366)
166 2pfz_A Putative exported prote 95.4 0.27 9.4E-06 49.4 15.3 159 415-625 19-185 (301)
167 2pfy_A Putative exported prote 95.3 0.27 9.1E-06 49.5 14.8 158 415-624 20-185 (301)
168 3oxn_A Putative transcriptiona 95.3 0.31 1.1E-05 46.7 14.7 180 409-671 32-216 (241)
169 1atg_A MODA, periplasmic molyb 95.3 0.21 7.3E-06 47.4 13.3 191 414-683 13-224 (231)
170 1nh8_A ATP phosphoribosyltrans 95.0 0.14 4.7E-06 50.3 10.9 151 448-672 70-225 (304)
171 2hqb_A Transcriptional activat 95.0 1 3.6E-05 44.9 18.1 155 10-176 47-204 (296)
172 2xed_A Putative maleate isomer 94.9 0.15 5.1E-06 50.3 11.1 117 18-163 82-219 (273)
173 3r26_A Molybdate-binding perip 94.9 0.36 1.2E-05 46.6 13.7 195 413-684 19-232 (237)
174 2hzl_A Trap-T family sorbitol/ 94.8 0.3 1E-05 50.6 13.7 189 415-656 51-252 (365)
175 3fzv_A Probable transcriptiona 94.8 0.76 2.6E-05 45.8 16.5 182 409-672 108-296 (306)
176 2i49_A Bicarbonate transporter 94.8 0.18 6E-06 53.7 11.9 107 561-672 153-280 (429)
177 4esw_A Pyrimidine biosynthesis 94.5 0.18 6.1E-06 51.9 11.0 66 557-629 102-170 (342)
178 2dgd_A 223AA long hypothetical 94.4 0.4 1.4E-05 45.7 12.5 78 83-163 96-182 (223)
179 3gzg_A Molybdate-binding perip 94.4 0.66 2.2E-05 45.2 14.3 193 413-684 35-248 (253)
180 2hxr_A HTH-type transcriptiona 94.4 1.2 4.1E-05 42.3 16.2 176 409-670 43-225 (238)
181 1xs5_A 29 kDa protein, membran 94.4 0.63 2.1E-05 44.9 13.7 114 557-684 91-232 (241)
182 2ql3_A Probable transcriptiona 94.2 0.95 3.3E-05 41.9 14.8 181 409-671 18-206 (209)
183 1sw5_A Osmoprotection protein 94.1 0.37 1.3E-05 47.7 11.8 87 558-656 125-223 (275)
184 2esn_A Probable transcriptiona 94.0 0.72 2.4E-05 46.2 14.2 181 409-673 114-304 (310)
185 3fxq_A LYSR type regulator of 93.9 0.68 2.3E-05 46.3 13.8 181 409-672 105-293 (305)
186 2y7p_A LYSR-type regulatory pr 93.6 1.1 3.8E-05 42.1 14.1 71 409-497 21-91 (218)
187 2fyi_A HTH-type transcriptiona 93.6 1.8 6.2E-05 40.8 15.7 182 409-673 27-215 (228)
188 1al3_A Cys regulon transcripti 93.2 2.9 0.0001 42.0 17.3 193 409-686 106-305 (324)
189 3s99_A Basic membrane lipoprot 93.1 2 6.9E-05 44.0 15.6 156 10-177 70-230 (356)
190 3qi7_A Putative transcriptiona 93.0 0.96 3.3E-05 46.2 12.7 165 13-180 73-252 (371)
191 1h3d_A ATP-phosphoribosyltrans 92.9 0.86 2.9E-05 44.9 11.8 151 448-672 55-219 (299)
192 4ef1_A Pheromone COB1/lipoprot 92.0 1.2 4E-05 42.7 11.2 116 557-684 92-237 (246)
193 2h9b_A HTH-type transcriptiona 91.5 6.2 0.00021 39.2 17.2 177 409-669 103-288 (312)
194 2xwv_A Sialic acid-binding per 91.4 3.6 0.00012 41.3 15.0 171 414-626 20-192 (312)
195 3ox4_A Alcohol dehydrogenase 2 91.4 0.99 3.4E-05 46.9 10.9 90 84-173 20-111 (383)
196 2vd3_A ATP phosphoribosyltrans 91.2 0.62 2.1E-05 45.6 8.5 151 449-672 55-209 (289)
197 1ixc_A CBNR, LYSR-type regulat 91.2 3.8 0.00013 40.3 15.0 175 409-669 104-287 (294)
198 2de3_A Dibenzothiophene desulf 91.1 0.89 3.1E-05 47.0 10.3 77 603-686 210-299 (365)
199 2h98_A HTH-type transcriptiona 91.1 8.2 0.00028 38.5 17.5 176 409-668 103-287 (313)
200 1i6a_A OXYR, hydrogen peroxide 91.0 0.52 1.8E-05 44.4 7.8 71 409-497 18-88 (219)
201 3bfj_A 1,3-propanediol oxidore 90.8 1.5 5E-05 45.8 11.6 88 85-172 23-114 (387)
202 1uth_A LYSR-type regulatory pr 90.6 2.2 7.4E-05 42.8 12.6 174 410-667 119-299 (315)
203 3kos_A HTH-type transcriptiona 89.8 5.7 0.00019 36.8 14.1 176 409-672 25-205 (219)
204 1twy_A ABC transporter, peripl 89.6 11 0.00037 36.7 16.7 71 412-497 43-114 (290)
205 3l6g_A Betaine ABC transporter 89.2 2.5 8.4E-05 41.1 11.1 100 557-666 95-214 (256)
206 1p99_A Hypothetical protein PG 89.2 2.4 8E-05 42.2 11.1 119 557-686 127-274 (295)
207 3onm_A Transcriptional regulat 89.2 14 0.00047 34.7 16.6 69 409-497 40-108 (238)
208 2rin_A Putative glycine betain 88.8 2 6.9E-05 42.8 10.4 65 558-627 105-183 (298)
209 1r9l_A Glycine betaine-binding 88.4 2.2 7.7E-05 42.8 10.5 65 558-628 108-194 (309)
210 3k6v_A Solute-binding protein 88.2 8.6 0.00029 39.2 14.8 75 412-497 54-134 (354)
211 2hpg_A ABC transporter, peripl 88.1 1.7 5.9E-05 44.0 9.5 169 415-626 27-207 (327)
212 3hn0_A Nitrate transport prote 87.8 2.2 7.4E-05 42.2 9.9 62 567-633 95-161 (283)
213 1ryo_A Serotransferrin; iron t 87.7 4.8 0.00017 40.4 12.3 18 447-464 44-61 (327)
214 1rrm_A Lactaldehyde reductase; 87.7 1.5 5E-05 45.8 8.9 89 85-173 21-111 (386)
215 1jfl_A Aspartate racemase; alp 87.3 2.1 7.1E-05 40.8 9.0 123 11-162 58-196 (228)
216 1vlj_A NADH-dependent butanol 87.0 3 0.0001 43.7 10.8 88 85-172 33-123 (407)
217 3tmg_A Glycine betaine, L-prol 86.8 4.4 0.00015 39.9 11.4 100 557-666 109-231 (280)
218 2zsk_A PH1733, 226AA long hypo 86.6 3 0.0001 39.6 9.7 81 17-127 64-144 (226)
219 2czl_A Hypothetical protein TT 86.4 1.6 5.5E-05 42.8 7.9 59 561-627 91-150 (272)
220 2q5c_A NTRC family transcripti 86.4 17 0.00059 33.3 14.5 127 10-178 36-162 (196)
221 1o2d_A Alcohol dehydrogenase, 86.2 6.2 0.00021 40.6 12.5 99 70-172 19-120 (371)
222 2pju_A Propionate catabolism o 85.9 12 0.00041 35.2 13.3 129 10-178 46-174 (225)
223 2eq5_A 228AA long hypothetical 85.9 2.1 7.1E-05 40.8 8.2 121 19-172 68-194 (228)
224 3cij_A UPF0100 protein AF_0094 85.4 10 0.00036 37.4 13.5 74 413-497 17-96 (295)
225 3r6u_A Choline-binding protein 85.3 12 0.00041 36.8 13.5 100 558-667 131-246 (284)
226 2vpn_A Periplasmic substrate b 84.9 6.3 0.00021 39.6 11.6 59 556-625 130-188 (316)
227 3cfx_A UPF0100 protein MA_0280 84.3 22 0.00074 35.0 15.3 74 413-497 17-96 (296)
228 1z7m_E ATP phosphoribosyltrans 83.7 2.4 8.1E-05 39.3 7.0 148 448-671 51-203 (208)
229 2gzm_A Glutamate racemase; enz 83.4 3.3 0.00011 40.4 8.5 119 14-161 53-185 (267)
230 2xxp_A CPS2A; replication, pep 83.1 1.7 5.8E-05 45.2 6.5 66 557-630 27-97 (398)
231 3uhj_A Probable glycerol dehyd 83.0 2.1 7.1E-05 44.5 7.2 82 85-170 43-126 (387)
232 3tqw_A Methionine-binding prot 82.7 2.7 9.3E-05 39.9 7.2 44 412-465 15-58 (240)
233 3hhf_B Transcriptional regulat 82.7 1.4 4.7E-05 40.9 5.3 177 410-671 21-204 (213)
234 3cfz_A UPF0100 protein MJ1186; 82.3 13 0.00044 36.6 12.6 74 413-497 17-96 (292)
235 3k2d_A ABC-type metal ION tran 81.8 2.3 8E-05 40.3 6.3 44 412-465 18-61 (237)
236 2jfn_A Glutamate racemase; cel 81.1 6.2 0.00021 38.9 9.5 45 13-57 70-114 (285)
237 3isp_A HTH-type transcriptiona 80.3 6.9 0.00024 38.6 9.9 164 429-671 119-286 (303)
238 3ce9_A Glycerol dehydrogenase; 80.1 12 0.00041 38.2 11.7 95 70-170 12-108 (354)
239 3s81_A Putative aspartate race 79.9 1.6 5.5E-05 42.6 4.7 46 11-57 83-128 (268)
240 2dwu_A Glutamate racemase; iso 79.3 8.3 0.00029 37.8 9.8 126 14-169 57-198 (276)
241 3lr1_A Tungstate ABC transport 79.2 1.6 5.5E-05 41.7 4.3 76 408-498 18-96 (236)
242 1jq5_A Glycerol dehydrogenase; 79.0 9.7 0.00033 39.1 10.7 95 70-170 10-106 (370)
243 1o63_A ATP phosphoribosyltrans 78.8 4 0.00014 37.9 6.7 146 449-672 48-197 (219)
244 3ist_A Glutamate racemase; str 78.6 4.3 0.00015 39.6 7.3 121 14-162 55-188 (269)
245 4edp_A ABC transporter, substr 78.5 40 0.0014 33.6 15.3 81 597-683 216-298 (351)
246 3ojc_A Putative aspartate/glut 78.4 2.7 9.2E-05 40.1 5.7 82 16-127 66-148 (231)
247 2oho_A Glutamate racemase; iso 77.8 5.1 0.00017 39.2 7.7 117 16-161 64-193 (273)
248 4dik_A Flavoprotein; TM0755, e 77.6 31 0.0011 35.8 14.0 92 96-192 266-365 (410)
249 1mkz_A Molybdenum cofactor bio 77.6 9.1 0.00031 34.4 8.7 65 95-161 10-78 (172)
250 2jfq_A Glutamate racemase; cel 77.5 8.2 0.00028 38.0 9.1 120 14-162 72-206 (286)
251 3fd3_A Chromosome replication 77.4 29 0.00098 31.2 12.7 178 409-670 15-196 (208)
252 1zuw_A Glutamate racemase 1; ( 77.2 8 0.00027 37.8 8.9 122 13-162 52-187 (272)
253 3o66_A Glycine betaine/carniti 77.2 24 0.00082 34.5 12.3 99 558-666 130-244 (282)
254 2vvt_A Glutamate racemase; iso 76.7 7.4 0.00025 38.4 8.6 121 13-162 73-207 (290)
255 3up9_A Putative uncharacterize 76.3 2.9 9.9E-05 39.8 5.1 44 412-465 19-62 (245)
256 3fxb_A Trap dicarboxylate tran 76.0 2.4 8.2E-05 42.9 4.9 168 413-626 31-203 (326)
257 4got_A Methionine-binding lipo 75.7 8.9 0.0003 36.6 8.3 42 412-464 18-59 (249)
258 3muq_A Uncharacterized conserv 75.1 2.6 8.9E-05 40.2 4.5 75 409-498 19-96 (237)
259 4ib2_A Putative lipoprotein; p 74.2 4.9 0.00017 38.5 6.2 43 413-466 24-66 (252)
260 1b73_A Glutamate racemase; iso 74.0 7.7 0.00026 37.5 7.7 120 13-162 49-180 (254)
261 1ccw_A Protein (glutamate muta 73.5 22 0.00077 30.3 9.8 86 97-189 5-94 (137)
262 3cg1_A UPF0100 protein PF0080; 72.6 47 0.0016 32.4 13.6 75 413-496 17-100 (296)
263 3hl0_A Maleylacetate reductase 72.6 9.8 0.00034 38.8 8.4 95 70-171 12-108 (353)
264 3u65_B TP33 protein; tetratric 72.1 5.2 0.00018 40.4 6.2 169 414-626 27-206 (328)
265 3m9w_A D-xylose-binding peripl 71.6 11 0.00037 37.4 8.6 79 96-177 3-84 (313)
266 2yxb_A Coenzyme B12-dependent 71.2 35 0.0012 30.1 10.7 86 96-188 19-108 (161)
267 1ve4_A ATP phosphoribosyltrans 70.1 19 0.00066 33.1 8.8 92 568-671 108-201 (206)
268 2vd2_A ATP phosphoribosyltrans 69.7 5.4 0.00018 37.1 5.1 145 449-671 57-205 (214)
269 3l49_A ABC sugar (ribose) tran 69.6 13 0.00045 36.2 8.6 79 96-177 6-87 (291)
270 3uhf_A Glutamate racemase; str 69.2 12 0.00042 36.4 7.8 35 23-57 82-116 (274)
271 3out_A Glutamate racemase; str 68.8 4.6 0.00016 39.4 4.7 41 15-56 58-99 (268)
272 3jzd_A Iron-containing alcohol 68.8 13 0.00043 38.0 8.3 83 85-171 26-110 (358)
273 4euo_A ABC transporter, substr 67.8 97 0.0033 30.4 15.2 84 593-682 175-258 (320)
274 3gbv_A Putative LACI-family tr 67.1 14 0.00047 36.3 8.2 84 94-177 7-95 (304)
275 3gxa_A Outer membrane lipoprot 66.9 9.1 0.00031 37.1 6.2 113 557-684 112-252 (275)
276 1y5e_A Molybdenum cofactor bio 66.1 21 0.00071 31.8 8.2 67 93-161 11-81 (169)
277 2hxw_A Major antigenic peptide 65.9 11 0.00039 35.5 7.0 73 413-497 13-92 (237)
278 1y80_A Predicted cobalamin bin 65.5 32 0.0011 31.8 9.8 89 96-190 89-181 (210)
279 3dbi_A Sugar-binding transcrip 65.4 15 0.00053 36.8 8.3 89 86-177 52-144 (338)
280 1oj7_A Hypothetical oxidoreduc 65.1 13 0.00046 38.7 7.8 83 86-172 43-128 (408)
281 3rfq_A Pterin-4-alpha-carbinol 65.1 16 0.00056 33.1 7.3 66 94-161 29-98 (185)
282 3h75_A Periplasmic sugar-bindi 64.6 13 0.00043 37.7 7.5 81 94-177 2-87 (350)
283 2pjk_A 178AA long hypothetical 64.6 24 0.00082 31.8 8.4 67 93-161 13-90 (178)
284 3kn3_A Putative periplasmic pr 64.3 6.3 0.00021 37.6 4.6 74 409-497 19-95 (242)
285 1ta9_A Glycerol dehydrogenase; 63.9 14 0.00049 39.0 7.7 83 85-170 81-165 (450)
286 3jy6_A Transcriptional regulat 63.8 18 0.00062 35.0 8.2 78 95-177 7-86 (276)
287 3ezx_A MMCP 1, monomethylamine 63.0 43 0.0015 31.1 10.1 89 96-190 93-187 (215)
288 2is8_A Molybdopterin biosynthe 61.8 22 0.00076 31.5 7.6 64 96-161 2-71 (164)
289 3g1w_A Sugar ABC transporter; 61.8 12 0.00043 36.8 6.6 80 96-177 5-87 (305)
290 3l6u_A ABC-type sugar transpor 61.5 17 0.00057 35.5 7.5 81 94-177 7-90 (293)
291 3tb6_A Arabinose metabolism tr 61.5 23 0.00079 34.5 8.6 79 96-177 16-100 (298)
292 2l82_A Designed protein OR32; 60.8 60 0.0021 25.6 10.2 97 72-177 4-104 (162)
293 2jfz_A Glutamate racemase; cel 60.7 27 0.00094 33.5 8.6 40 17-57 53-92 (255)
294 3szp_A Transcriptional regulat 60.6 4.2 0.00014 39.8 2.8 179 409-672 104-287 (291)
295 2qsx_A Putative transcriptiona 60.2 66 0.0023 29.4 11.2 71 595-672 140-212 (218)
296 2l69_A Rossmann 2X3 fold prote 59.6 57 0.0019 25.0 8.3 99 70-176 26-125 (134)
297 2fp4_A Succinyl-COA ligase [GD 59.1 1.4E+02 0.0048 29.3 13.6 144 11-174 80-234 (305)
298 3uug_A Multiple sugar-binding 58.6 21 0.00073 35.5 7.8 79 96-177 4-85 (330)
299 3brq_A HTH-type transcriptiona 58.1 29 0.00099 33.7 8.6 86 88-177 12-102 (296)
300 3o74_A Fructose transport syst 57.8 10 0.00036 36.5 5.1 79 96-177 3-83 (272)
301 2fn9_A Ribose ABC transporter, 56.9 22 0.00076 34.6 7.4 79 96-177 3-84 (290)
302 3ir1_A Outer membrane lipoprot 56.5 19 0.00064 34.2 6.2 42 412-464 13-55 (245)
303 3d02_A Putative LACI-type tran 56.3 29 0.001 33.9 8.3 80 96-177 5-87 (303)
304 3mz1_A Putative transcriptiona 55.7 22 0.00074 34.5 7.2 72 593-671 215-288 (300)
305 3iwt_A 178AA long hypothetical 55.6 27 0.00093 31.3 7.2 63 97-161 17-90 (178)
306 2g2c_A Putative molybdenum cof 54.9 22 0.00074 31.7 6.2 64 96-161 6-78 (167)
307 2k1e_A Water soluble analogue 53.9 1.5 5.2E-05 35.7 -1.5 35 518-552 62-96 (103)
308 8abp_A L-arabinose-binding pro 53.9 33 0.0011 33.5 8.2 78 96-177 3-83 (306)
309 3h5o_A Transcriptional regulat 53.4 32 0.0011 34.5 8.1 86 88-177 55-142 (339)
310 4gd5_A Phosphate ABC transport 53.3 26 0.0009 34.1 7.2 76 412-497 48-123 (279)
311 2fvy_A D-galactose-binding per 53.1 32 0.0011 33.7 8.0 79 96-177 3-85 (309)
312 3k4h_A Putative transcriptiona 52.9 24 0.00082 34.3 7.0 80 94-177 7-93 (292)
313 3qvl_A Putative hydantoin race 52.7 72 0.0025 30.3 9.9 71 96-170 110-193 (245)
314 3p6l_A Sugar phosphate isomera 52.6 58 0.002 31.0 9.6 94 83-177 24-129 (262)
315 1h45_A Lactoferrin; metal tran 52.3 37 0.0013 34.1 8.0 19 447-465 42-60 (334)
316 2fqx_A Membrane lipoprotein TM 51.2 48 0.0016 32.9 8.9 63 96-162 5-72 (318)
317 3huu_A Transcription regulator 50.5 18 0.00062 35.6 5.6 87 87-177 14-107 (305)
318 3rf7_A Iron-containing alcohol 50.5 41 0.0014 34.4 8.2 96 70-172 28-131 (375)
319 3kbq_A Protein TA0487; structu 50.5 34 0.0012 30.5 6.7 62 96-160 4-70 (172)
320 1tjy_A Sugar transport protein 50.2 17 0.00059 36.1 5.4 80 96-177 4-86 (316)
321 3kke_A LACI family transcripti 50.0 26 0.00088 34.5 6.6 87 87-177 7-95 (303)
322 3e3m_A Transcriptional regulat 49.4 38 0.0013 34.2 8.0 86 88-177 63-150 (355)
323 3ksm_A ABC-type sugar transpor 49.4 22 0.00075 34.2 5.9 80 97-177 2-85 (276)
324 2b4l_A Glycine betaine-binding 49.3 28 0.00095 33.8 6.5 33 425-468 190-222 (268)
325 1xah_A Sadhqs, 3-dehydroquinat 49.0 52 0.0018 33.3 8.8 100 70-176 11-116 (354)
326 3okf_A 3-dehydroquinate syntha 48.5 46 0.0016 34.2 8.2 101 70-176 41-149 (390)
327 2fep_A Catabolite control prot 48.4 35 0.0012 33.2 7.3 78 96-177 17-96 (289)
328 3rot_A ABC sugar transporter, 48.3 20 0.00067 35.2 5.4 81 96-177 4-87 (297)
329 2iks_A DNA-binding transcripti 48.3 26 0.00087 34.2 6.3 88 87-177 12-101 (293)
330 3pzy_A MOG; ssgcid, seattle st 48.3 24 0.00082 31.3 5.3 63 96-161 8-75 (164)
331 3iv7_A Alcohol dehydrogenase I 48.2 19 0.00063 36.9 5.2 82 84-171 26-109 (364)
332 1jx6_A LUXP protein; protein-l 47.8 38 0.0013 33.9 7.6 82 96-177 44-129 (342)
333 3s99_A Basic membrane lipoprot 47.8 49 0.0017 33.6 8.3 87 95-189 26-118 (356)
334 3l4e_A Uncharacterized peptida 47.1 36 0.0012 31.4 6.6 96 85-189 17-121 (206)
335 1xrs_B D-lysine 5,6-aminomutas 46.7 92 0.0031 29.9 9.5 88 96-189 121-224 (262)
336 3e61_A Putative transcriptiona 46.6 37 0.0013 32.6 7.1 77 95-177 8-87 (277)
337 2x7x_A Sensor protein; transfe 46.2 60 0.002 32.1 8.8 80 95-177 6-88 (325)
338 3hs3_A Ribose operon repressor 44.7 41 0.0014 32.4 7.1 70 88-160 3-75 (277)
339 3lmz_A Putative sugar isomeras 44.6 67 0.0023 30.5 8.5 94 83-177 32-127 (257)
340 3kjx_A Transcriptional regulat 44.6 62 0.0021 32.3 8.7 78 96-177 69-148 (344)
341 3gv0_A Transcriptional regulat 43.3 40 0.0014 32.7 6.8 80 94-177 7-90 (288)
342 4ecf_A ABC-type phosphate tran 43.1 52 0.0018 31.6 7.4 71 412-497 19-92 (264)
343 2l69_A Rossmann 2X3 fold prote 43.1 1.1E+02 0.0038 23.4 8.3 71 70-149 51-121 (134)
344 3pjs_K KCSA, voltage-gated pot 42.9 4.7 0.00016 36.1 -0.3 34 518-551 89-122 (166)
345 2ioy_A Periplasmic sugar-bindi 42.7 41 0.0014 32.5 6.7 79 96-177 2-83 (283)
346 3tsm_A IGPS, indole-3-glycerol 42.6 1.4E+02 0.0048 28.8 10.2 88 83-178 81-171 (272)
347 3hhg_A Transcriptional regulat 42.5 18 0.00062 35.4 4.1 67 409-496 106-172 (306)
348 2h3h_A Sugar ABC transporter, 42.3 41 0.0014 33.1 6.8 79 97-177 3-83 (313)
349 3egc_A Putative ribose operon 42.0 23 0.00079 34.5 4.8 80 94-177 7-88 (291)
350 3k9c_A Transcriptional regulat 41.8 43 0.0015 32.5 6.7 84 88-177 5-89 (289)
351 1jlj_A Gephyrin; globular alph 41.6 75 0.0026 28.7 7.7 68 92-161 11-87 (189)
352 1jye_A Lactose operon represso 40.9 65 0.0022 32.3 8.1 66 94-161 60-127 (349)
353 2dri_A D-ribose-binding protei 40.5 45 0.0015 31.9 6.6 79 96-177 2-83 (271)
354 1sg6_A Pentafunctional AROM po 40.3 1.2E+02 0.004 31.2 9.9 85 90-176 31-131 (393)
355 3cvg_A Putative metal binding 40.3 24 0.00082 34.7 4.5 74 409-497 33-116 (294)
356 3umf_A Adenylate kinase; rossm 40.0 11 0.00037 35.4 1.8 37 22-58 25-61 (217)
357 4gl0_A LMO0810 protein; struct 39.7 2.8E+02 0.0096 27.1 13.0 75 602-682 196-272 (333)
358 2rjo_A Twin-arginine transloca 39.7 41 0.0014 33.4 6.3 79 96-177 6-89 (332)
359 2hqb_A Transcriptional activat 39.6 57 0.002 31.9 7.2 64 96-162 6-73 (296)
360 2bon_A Lipid kinase; DAG kinas 39.6 1.9E+02 0.0066 28.6 11.3 94 71-174 11-104 (332)
361 2vk2_A YTFQ, ABC transporter p 39.4 36 0.0012 33.4 5.7 79 96-177 3-84 (306)
362 3d8u_A PURR transcriptional re 39.1 45 0.0015 31.9 6.3 78 96-177 4-83 (275)
363 3c3k_A Alanine racemase; struc 38.8 76 0.0026 30.5 8.0 79 94-177 7-87 (285)
364 2rgy_A Transcriptional regulat 38.4 44 0.0015 32.4 6.2 79 95-177 8-91 (290)
365 1uuy_A CNX1, molybdopterin bio 38.3 1E+02 0.0034 27.2 7.9 65 95-161 5-80 (167)
366 3miz_A Putative transcriptiona 38.1 90 0.0031 30.2 8.5 85 87-176 5-92 (301)
367 1lnq_A MTHK channels, potassiu 38.0 22 0.00075 35.8 3.9 105 518-630 67-171 (336)
368 2pbq_A Molybdenum cofactor bio 37.9 65 0.0022 28.8 6.6 63 96-161 6-77 (178)
369 2i2x_B MTAC, methyltransferase 37.3 1.1E+02 0.0039 29.1 8.7 87 95-190 123-214 (258)
370 2hsg_A Glucose-resistance amyl 37.2 48 0.0016 33.0 6.3 78 96-177 61-140 (332)
371 1iej_A Ovotransferrin; iron, m 37.2 39 0.0013 33.9 5.4 19 447-465 41-59 (332)
372 3bil_A Probable LACI-family tr 36.9 51 0.0018 33.1 6.6 78 96-177 67-146 (348)
373 3o6p_A Peptide ABC transporter 36.5 55 0.0019 30.5 6.3 47 411-468 111-158 (229)
374 2l2t_A Receptor tyrosine-prote 36.4 19 0.00066 23.7 2.0 8 730-737 31-38 (44)
375 1di6_A MOGA, molybdenum cofact 36.2 72 0.0025 29.0 6.7 64 96-161 4-75 (195)
376 2o20_A Catabolite control prot 35.5 71 0.0024 31.7 7.3 80 94-177 62-143 (332)
377 3to5_A CHEY homolog; alpha(5)b 35.4 78 0.0027 26.7 6.4 59 110-176 23-83 (134)
378 2ks1_B Epidermal growth factor 35.2 22 0.00075 23.5 2.1 8 730-737 32-39 (44)
379 3hcw_A Maltose operon transcri 35.1 42 0.0014 32.7 5.4 79 95-177 7-92 (295)
380 3qk7_A Transcriptional regulat 35.0 53 0.0018 31.9 6.1 78 95-177 6-89 (294)
381 3fni_A Putative diflavin flavo 34.5 1.2E+02 0.0042 26.3 7.8 83 96-187 5-94 (159)
382 2vvr_A Ribose-5-phosphate isom 34.5 1.6E+02 0.0055 25.3 8.1 60 104-163 8-70 (149)
383 3dmy_A Protein FDRA; predicted 34.3 4.3E+02 0.015 27.7 16.1 140 12-176 46-198 (480)
384 3lvu_A ABC transporter, peripl 34.0 63 0.0022 30.7 6.4 45 412-468 142-186 (258)
385 3sr0_A Adenylate kinase; phosp 34.0 19 0.00064 33.4 2.4 31 28-58 2-32 (206)
386 4exl_A PBP 1, phosphate-bindin 33.9 92 0.0031 29.9 7.5 50 447-497 40-92 (265)
387 1i4n_A Indole-3-glycerol phosp 33.8 1.1E+02 0.0038 29.1 7.8 87 83-178 63-152 (251)
388 3qbe_A 3-dehydroquinate syntha 33.7 2.8E+02 0.0096 28.0 11.3 100 69-176 22-129 (368)
389 3clk_A Transcription regulator 33.6 47 0.0016 32.2 5.4 79 95-177 8-89 (290)
390 3bbl_A Regulatory protein of L 33.0 55 0.0019 31.6 5.9 78 96-177 5-88 (287)
391 3i42_A Response regulator rece 32.7 1.9E+02 0.0064 23.1 8.6 57 110-175 14-72 (127)
392 1kq3_A Glycerol dehydrogenase; 32.6 20 0.00068 36.8 2.5 93 70-170 20-114 (376)
393 1o1x_A Ribose-5-phosphate isom 32.0 1.5E+02 0.0052 25.7 7.5 66 98-163 13-81 (155)
394 2xij_A Methylmalonyl-COA mutas 31.5 2.8E+02 0.0095 31.1 11.5 85 96-187 605-693 (762)
395 2qmw_A PDT, prephenate dehydra 30.9 1.4E+02 0.0048 28.7 8.0 81 569-658 4-97 (267)
396 1gtk_A Porphobilinogen deamina 30.8 1.6E+02 0.0056 28.8 8.5 63 558-628 113-176 (313)
397 4h33_A LMO2059 protein; bilaye 30.6 4.9 0.00017 34.6 -2.1 34 518-551 65-98 (137)
398 3hp4_A GDSL-esterase; psychrot 30.0 2.7E+02 0.0093 24.1 11.0 80 96-176 3-103 (185)
399 3he8_A Ribose-5-phosphate isom 29.8 1.7E+02 0.0056 25.3 7.3 61 103-163 6-69 (149)
400 3rpw_A ABC transporter; struct 29.8 4.2E+02 0.014 26.2 13.8 80 598-683 220-299 (365)
401 1y81_A Conserved hypothetical 29.7 60 0.0021 27.6 4.7 35 152-189 69-103 (138)
402 3lte_A Response regulator; str 29.6 2.2E+02 0.0074 22.8 8.7 58 110-176 17-76 (132)
403 4es6_A Uroporphyrinogen-III sy 29.6 39 0.0014 32.2 4.0 92 77-174 110-206 (254)
404 3gt7_A Sensor protein; structu 29.4 2.4E+02 0.008 23.7 8.9 58 110-176 18-77 (154)
405 3pam_A Transmembrane protein; 29.3 67 0.0023 30.6 5.6 48 413-472 142-189 (259)
406 3brs_A Periplasmic binding pro 28.9 31 0.0011 33.4 3.2 81 96-177 6-91 (289)
407 3lkv_A Uncharacterized conserv 28.7 1.4E+02 0.0047 29.2 8.0 64 95-161 8-78 (302)
408 3ph3_A Ribose-5-phosphate isom 28.1 1.8E+02 0.0061 25.6 7.3 61 103-163 26-89 (169)
409 1req_A Methylmalonyl-COA mutas 27.9 1.5E+02 0.0052 33.0 8.5 85 96-187 597-685 (727)
410 1qpz_A PURA, protein (purine n 27.8 1.4E+02 0.0049 29.4 8.1 65 94-161 57-123 (340)
411 2nxo_A Hypothetical protein SC 27.5 93 0.0032 30.2 6.4 20 447-466 41-60 (291)
412 3bul_A Methionine synthase; tr 27.3 2.7E+02 0.0091 30.2 10.2 89 95-191 98-190 (579)
413 4gx0_A TRKA domain protein; me 27.2 15 0.00052 40.2 0.5 107 518-631 73-187 (565)
414 2ih3_C Voltage-gated potassium 27.1 4.9 0.00017 33.8 -2.7 34 518-551 83-116 (122)
415 3gl9_A Response regulator; bet 27.0 2.1E+02 0.0071 22.8 7.7 58 110-176 13-72 (122)
416 3apt_A Methylenetetrahydrofola 26.8 4.6E+02 0.016 25.7 12.5 100 79-180 84-203 (310)
417 1nrz_A PTS system, sorbose-spe 26.5 1.8E+02 0.0062 25.5 7.3 84 83-178 15-98 (164)
418 3qja_A IGPS, indole-3-glycerol 26.3 1.9E+02 0.0066 27.8 8.2 88 83-178 74-164 (272)
419 2klu_A T-cell surface glycopro 26.3 83 0.0028 22.6 3.9 12 740-751 47-58 (70)
420 3c5y_A Ribose/galactose isomer 26.2 1E+02 0.0035 28.6 5.7 71 93-163 17-95 (231)
421 1gud_A ALBP, D-allose-binding 26.1 79 0.0027 30.5 5.6 81 96-177 2-85 (288)
422 3grc_A Sensor protein, kinase; 26.0 1.7E+02 0.006 23.8 7.2 56 110-174 17-74 (140)
423 4a29_A Engineered retro-aldol 25.8 2.8E+02 0.0096 26.3 8.8 85 85-178 68-155 (258)
424 1pc3_A Phosphate-binding prote 25.8 62 0.0021 32.7 4.8 73 413-496 39-114 (350)
425 1dbq_A Purine repressor; trans 25.8 1E+02 0.0035 29.5 6.4 64 96-162 8-73 (289)
426 2qu7_A Putative transcriptiona 25.5 95 0.0033 29.8 6.1 65 95-162 8-73 (288)
427 2pln_A HP1043, response regula 25.4 2.6E+02 0.0091 22.6 8.3 55 110-175 29-83 (137)
428 1sbp_A Sulfate-binding protein 25.3 1.3E+02 0.0046 29.1 7.2 46 411-465 13-63 (310)
429 3jvd_A Transcriptional regulat 25.2 70 0.0024 31.8 5.1 70 88-161 57-128 (333)
430 4i1d_A ABC transporter substra 25.1 4.7E+02 0.016 25.2 13.3 72 598-674 185-256 (324)
431 2dfa_A Hypothetical UPF0271 pr 24.8 1.4E+02 0.0048 28.1 6.5 112 11-127 121-248 (250)
432 1ixh_A Phosphate-binding prote 24.8 59 0.002 32.3 4.4 73 414-497 15-88 (321)
433 1byk_A Protein (trehalose oper 24.7 1.1E+02 0.0038 28.6 6.3 63 96-161 3-67 (255)
434 3szu_A ISPH, 4-hydroxy-3-methy 24.7 54 0.0018 32.5 3.8 49 8-56 207-256 (328)
435 1vsq_C Mannose-specific phosph 24.2 1.8E+02 0.006 25.6 6.8 84 83-178 18-101 (165)
436 4h1x_A PBP 2, phosphate-bindin 24.2 1.1E+02 0.0039 29.3 6.1 76 412-498 167-242 (265)
437 1usg_A Leucine-specific bindin 24.1 2E+02 0.0069 28.2 8.4 80 97-177 4-94 (346)
438 2q9u_A A-type flavoprotein; fl 24.0 4.9E+02 0.017 26.4 11.6 74 95-176 256-337 (414)
439 3m0z_A Putative aldolase; MCSG 24.0 3.9E+02 0.013 24.7 8.9 147 10-160 48-220 (249)
440 3lua_A Response regulator rece 23.9 2.5E+02 0.0085 22.9 7.8 56 110-174 15-75 (140)
441 3guv_A Site-specific recombina 23.9 3.3E+02 0.011 23.5 8.8 40 138-177 59-106 (167)
442 3hly_A Flavodoxin-like domain; 23.9 3.5E+02 0.012 23.2 10.5 86 97-191 2-94 (161)
443 2qh8_A Uncharacterized protein 23.8 1.5E+02 0.0051 28.8 7.2 64 95-161 8-78 (302)
444 3zy2_A Putative GDP-fucose pro 23.6 1.6E+02 0.0054 29.4 6.9 90 75-177 260-349 (362)
445 3o1l_A Formyltetrahydrofolate 23.5 5E+02 0.017 25.3 10.6 96 28-129 24-138 (302)
446 2qv7_A Diacylglycerol kinase D 23.5 3.9E+02 0.013 26.4 10.3 76 95-174 24-102 (337)
447 1req_B Methylmalonyl-COA mutas 23.5 1.7E+02 0.0059 32.0 7.9 82 97-188 511-597 (637)
448 4eqb_A Spermidine/putrescine A 23.4 4.8E+02 0.016 25.2 11.1 76 601-682 192-269 (330)
449 3lft_A Uncharacterized protein 23.3 1.2E+02 0.0042 29.2 6.4 65 96-161 3-71 (295)
450 3clh_A 3-dehydroquinate syntha 23.2 1.1E+02 0.0038 30.7 6.1 81 95-176 26-111 (343)
451 3o1i_D Periplasmic protein TOR 23.0 83 0.0028 30.5 5.1 80 96-177 6-88 (304)
452 3cnb_A DNA-binding response re 22.6 3.1E+02 0.011 22.2 8.4 58 110-175 19-79 (143)
453 3hv2_A Response regulator/HD d 22.5 2.6E+02 0.0091 23.2 7.9 58 110-176 25-84 (153)
454 3t6k_A Response regulator rece 22.4 2.7E+02 0.0093 22.6 7.8 57 110-175 15-73 (136)
455 3dnf_A ISPH, LYTB, 4-hydroxy-3 22.1 54 0.0018 32.0 3.2 50 8-57 191-241 (297)
456 2qip_A Protein of unknown func 21.9 3.9E+02 0.013 23.1 10.0 92 85-177 37-134 (165)
457 3p9x_A Phosphoribosylglycinami 21.7 2.5E+02 0.0086 25.8 7.6 88 82-176 15-105 (211)
458 3f2i_A ALR0221 protein; alpha- 21.7 2.6E+02 0.009 24.5 7.6 93 77-174 27-123 (172)
459 1g8l_A Molybdopterin biosynthe 21.6 1.7E+02 0.0057 30.3 7.1 63 96-161 178-252 (411)
460 2a9h_A Voltage-gated potassium 21.2 5.7 0.0002 35.0 -3.6 36 518-553 106-141 (155)
461 3eff_K Voltage-gated potassium 21.1 18 0.00062 31.0 -0.3 33 518-550 62-94 (139)
462 1tmy_A CHEY protein, TMY; chem 21.0 3E+02 0.01 21.4 7.7 59 110-176 13-73 (120)
463 4evq_A Putative ABC transporte 21.0 2.6E+02 0.009 27.7 8.7 81 94-177 15-107 (375)
464 3f6c_A Positive transcription 20.5 3.3E+02 0.011 21.7 8.3 59 110-176 12-72 (134)
465 2h0a_A TTHA0807, transcription 20.4 37 0.0013 32.5 1.8 75 98-176 2-78 (276)
466 1v6t_A Hypothetical UPF0271 pr 20.3 1.3E+02 0.0046 28.4 5.3 112 11-127 121-248 (255)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=9e-83 Score=757.21 Aligned_cols=683 Identities=17% Similarity=0.282 Sum_probs=564.8
Q ss_pred CCC-ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQF-KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~-~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
+++ ++..|+.++|+++++ +|.|||||.+|+++.+++++++.+++|+|+++ ++.. ..++|+||+.|+ ++.++
T Consensus 41 ~~~~~~~~a~~~~~~l~~~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~ 112 (823)
T 3kg2_A 41 LEVANSFAVTNAFCSQFSR-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGAL 112 (823)
T ss_dssp ECTTCHHHHHHHHHHHHHT-TCSEEEECCCTTTHHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHH
T ss_pred cCCCChHHHHHHHHHHHhc-CcEEEEcCCChhHHHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHH
Confidence 677 899999999999987 89999999999999999999999999999973 3322 467899999999 88999
Q ss_pred HHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC--CchhhHHHHHHHHhcCCccEEEEEeChHH
Q 037761 87 SAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS--AEDFQISKELSKLSTMQTRVFIVHMNTAL 164 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vIi~~~~~~~ 164 (753)
+++++++||+||++|+ |+++|.+..+.+.+++++.|+||+..+.++.+ .++.|++.++.+|+++++|+|+++++.++
T Consensus 113 ~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~ 191 (823)
T 3kg2_A 113 LSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDK 191 (823)
T ss_dssp HHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHH
T ss_pred HHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHH
Confidence 9999999999999999 78899999999999999999999999877654 23679999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCcccc
Q 037761 165 ASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEI 244 (753)
Q Consensus 165 ~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 244 (753)
+..++++|+++||..++++||.++.+...... ....+...|++++..+.++.|.+++|.++|++++++.++......+
T Consensus 192 ~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 269 (823)
T 3kg2_A 192 VNDIVDQVITIGKHVKGYHYIIANLGFTDGDL--LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATI 269 (823)
T ss_dssp HHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC--SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCC
T ss_pred HHHHHHHHHHcCcCCCCeEEEEecccccccch--HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCcccc
Confidence 99999999999998889999999864433222 1222345568888888888999999999999999987665555568
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC--ccccchHHHHHHHHhcccccceeeEEe-eCCcc
Q 037761 245 NISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSL--GFSRIGHILCNQILNTQFKGLSGEFHL-VNGQL 321 (753)
Q Consensus 245 ~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g~~ 321 (753)
+.+++++||||+++|+|++++.... ..... .....+|... ..+.+|.+|.++|++++|+|++|.+.| ++|++
T Consensus 270 ~~~a~~~YDAv~~la~Al~~~~~~~-~~~~~----~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~ 344 (823)
T 3kg2_A 270 KYTSALTYDAVQVMTEAFRNLRKQR-IEISR----RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKR 344 (823)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTT-CCCCC----SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCB
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhc-ccccc----CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcc
Confidence 8899999999999999999984322 11100 0012223322 356789999999999999999999999 89999
Q ss_pred ceeEEEEEEEeccc-eEEEEeecCCCcccccccCccCCCCceecCCCCCCCCCcccccceEEeeccCCCCcceEEEEEcC
Q 037761 322 ESSVFEIVNVIGTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDG 400 (753)
Q Consensus 322 ~~~~y~i~~~~~~~-~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~l~v~~~~~~~~~~~~~~~~~~ 400 (753)
....|+|+++++++ .+||.|++..++.... + ......+.+++|++...+||..+.. ..+.
T Consensus 345 ~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~-------------~-----~~~~~~~~~l~v~~~~~~P~~~~~~-~~~~ 405 (823)
T 3kg2_A 345 INYTINIMELKTNGPRKIGYWSEVDKMVLTE-------------D-----DTSGLEQKTVVVTTILESPYVMMKA-NHAA 405 (823)
T ss_dssp CSCEEEEEEECSSCEEEEEEEETTTEEEECC-------------C-----CCSSCCCCCEEEEECCCTTTSEECT-TGGG
T ss_pred cccEEEEEEEcCCCCeeEEEEcCCCCceecc-------------C-----cccccCCCEEEEEEecCCCcEEEec-Cccc
Confidence 88899999999888 9999999887654321 0 0112223489999976666553311 1122
Q ss_pred CCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCC---CCCChHHHHHHHHcCcccEEEeeeeeecccceee
Q 037761 401 DLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGE---MAGTYDELLYQIKLKKFDAVVGDISIVASRTDYV 477 (753)
Q Consensus 401 ~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~ 477 (753)
.++++++.|+++||++++++ ++||+++++.++. ..+|. .|++|++++++|.+|++|++++++++|++|.+.+
T Consensus 406 ~~~~~~~~G~~~dl~~~~a~----~l~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~ 480 (823)
T 3kg2_A 406 LAGNERYEGYCVDLAAEIAK----HCGFKYKLTIVGD-GKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVI 480 (823)
T ss_dssp CCGGGGEESHHHHHHHHHHH----HHTCCEEEEECSS-CCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTE
T ss_pred cCCCCceEEEHHHHHHHHHH----HcCCcEEEEEccC-CcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeE
Confidence 35788999999999999999 9998877766653 23443 5788999999999999999999999999999999
Q ss_pred eccccccccceEEEEecccCCCCceeEEEecCccccceee----------------------------------------
Q 037761 478 EFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLAL---------------------------------------- 517 (753)
Q Consensus 478 ~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~i---------------------------------------- 517 (753)
+||.||+.++.++++|++....++++.|++||++.+|+++
T Consensus 481 dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~ 560 (823)
T 3kg2_A 481 DFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTN 560 (823)
T ss_dssp EECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CH
T ss_pred EeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccc
Confidence 9999999999999999997767789999999999999865
Q ss_pred -----------------------ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC-CeEEE
Q 037761 518 -----------------------VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES-HFVGF 573 (753)
Q Consensus 518 -----------------------p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~-~~~~~ 573 (753)
|++.++|+++++|||++||++++|||+|+|+||.+++.++|+|++||.+++ .++++
T Consensus 561 ~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~ 640 (823)
T 3kg2_A 561 EFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGT 640 (823)
T ss_dssp HHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEEC
T ss_pred cccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEE
Confidence 467789999999999999999999999999999999999999999998754 36788
Q ss_pred ecCchHHHHHHHhhCCCC-----------CceecCCCHHHHHHHHh-cCCCCCCeeEEEeccccHHHHHhcC-CCCcEEe
Q 037761 574 QSGSFVEDFLVKQLNFSR-----------NQTRPLSNFGEYKEALS-NGSRKGGVSAIFEEIPYIKVFLKKY-SSKYTTA 640 (753)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~-~g~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~ 640 (753)
..++...+++.+ ...+. .....+.+.+++++++. ++. .+|++.+...++|+.++. | +++.+
T Consensus 641 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c-~l~~v 714 (823)
T 3kg2_A 641 LDSGSTKEFFRR-SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG----KYAYLLESTMNEYIEQRKPC-DTMKV 714 (823)
T ss_dssp BSSSHHHHHHHH-CCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTT----SEEEEEEHHHHHHHHTSTTC-CEEEE
T ss_pred EeCCcHHHHHHh-ccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCC----ceEEEechHHHHHHHhcCCC-ceEEc
Confidence 878888888874 11110 01123468899999996 343 689999999999888877 8 89999
Q ss_pred CcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCCCCCCCcccCCCccCcccccccchhhHHHHHHH
Q 037761 641 GPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIVGIA 720 (753)
Q Consensus 641 ~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~f~il~~g 720 (753)
++.+...++++++||+|||++.||+.|++|+|+| ++++|.++|+.....|............+|+++++.|+|+++++|
T Consensus 715 ~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G-~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g 793 (823)
T 3kg2_A 715 GGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQG-LLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGG 793 (823)
T ss_dssp SCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTT-HHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHH
T ss_pred cccccccceeEeecCCChHHHHHHHHHHHHHhCC-cHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999988788887654332356799999999999999999
Q ss_pred HHHHHHHHHHHH-hccch
Q 037761 721 TLLALLISERYI-WQKPV 737 (753)
Q Consensus 721 ~~l~~~vf~~~~-~~~~~ 737 (753)
+++|+++|+.|+ |+++.
T Consensus 794 ~~la~~vf~~E~~~~~~~ 811 (823)
T 3kg2_A 794 LGLAMLVALIEFCYKSRA 811 (823)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHcch
Confidence 999999999544 44443
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=6.3e-41 Score=360.79 Aligned_cols=325 Identities=14% Similarity=0.230 Sum_probs=271.1
Q ss_pred CCC-ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQF-KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~-~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
++| ||.+|+.++++|+++ +|.|||||.+|+++.+++++++.++||+|+++. +.++ ..+|.||+.|+ ++.++
T Consensus 50 ~~~~d~~~a~~~a~~li~~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~ 121 (389)
T 3o21_A 50 LDSSNSFSVTNAFCSQFSR-GVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAI 121 (389)
T ss_dssp CCTTCHHHHHHHHHHHHTT-TCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHH
T ss_pred cCCCChHHHHHHHHHHHhc-CcEEEEeCCChhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHH
Confidence 667 999999999999988 999999999999999999999999999998854 4333 34667788777 89999
Q ss_pred HHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHH
Q 037761 87 SAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALAS 166 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~ 166 (753)
+++++++||+||++|+ |++||....+.+.+++++.|+||+..+.++.. ++.|++++|++|+++++|+|+++++.+++.
T Consensus 122 ~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~ik~~~~~vii~~~~~~~~~ 199 (389)
T 3o21_A 122 LSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIK-DVQEFRRIIEEMDRRQEKRYLIDCEVERIN 199 (389)
T ss_dssp HHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCC-CTHHHHHHHHHHHTTTCCEEEEESCHHHHH
T ss_pred HHHHHhCCCCEEEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCC-CcHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 9999999999999999 88999999999999999999999998876532 356999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCccccch
Q 037761 167 RLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINI 246 (753)
Q Consensus 167 ~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 246 (753)
.+++||+++||..++++||+++.+...... ........|++++....++.|.+++|.++|+++|++.+|......++.
T Consensus 200 ~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
T 3o21_A 200 TILEQVVILGKHSRGYHYMLANLGFTDILL--ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKY 277 (389)
T ss_dssp HHHHHHHHHCSCSTTCEEEECCTTGGGCCC--HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCH
T ss_pred HHHHHHHHcCcccCCeEEEEccCCcccccH--HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccch
Confidence 999999999998888999998866544322 234455678888887888899999999999999987655433345688
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--CCCccccchHHHHHHHHhcccccceeeEEe-eCCccce
Q 037761 247 SGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDF--GSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNGQLES 323 (753)
Q Consensus 247 ~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g~~~~ 323 (753)
+++++||||+++++|++++..+. ..... .+...+| +....|.+|.+|.++|++++|+|++|++.| +||++..
T Consensus 278 ~a~~~YDAv~~~a~Al~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~ 352 (389)
T 3o21_A 278 TSALTHDAILVIAEAFRYLRRQR-VDVSR----RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTN 352 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCCC---------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCS
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC-ccccc----CCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCccc
Confidence 99999999999999999984321 11000 0001223 233567889999999999999999999999 8999977
Q ss_pred eEEEEEEEeccc-eEEEEeecCCCccc
Q 037761 324 SVFEIVNVIGTG-RVVGYWTSEKGLTQ 349 (753)
Q Consensus 324 ~~y~i~~~~~~~-~~vg~~~~~~~~~~ 349 (753)
..|+|+++.+++ ++||.|++..++..
T Consensus 353 ~~~~i~~~~~~g~~~VG~w~~~~g~~~ 379 (389)
T 3o21_A 353 YTIDVYEMKVSGSRKAGYWNEYERFVP 379 (389)
T ss_dssp CCEEEEEEETTEEEEEEEEETTTEEEC
T ss_pred ceEEEEEEcCCCceeeeEEcCCCCccc
Confidence 899999999888 99999999887653
No 3
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=7.5e-41 Score=359.03 Aligned_cols=324 Identities=16% Similarity=0.247 Sum_probs=252.1
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 9 QFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 9 ~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
++||.+|++++|+|+++ +|.+||||.+|+++.+++++++.+++|+|++++. . ....+|+||+.|+ ++.++++
T Consensus 43 ~~d~~~a~~~~~~li~~-~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~ 114 (376)
T 3hsy_A 43 VANSFAVTNAFCSQFSR-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLS 114 (376)
T ss_dssp TTCHHHHHHHHHHHHHT-TCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHH
T ss_pred CCChHHHHHHHHHHHhc-CcEEEECCCchhHHHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHH
Confidence 35999999999999987 8999999999999999999999999999999763 2 2356889999887 8999999
Q ss_pred HHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC--CchhhHHHHHHHHhcCCccEEEEEeChHHHH
Q 037761 89 VLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS--AEDFQISKELSKLSTMQTRVFIVHMNTALAS 166 (753)
Q Consensus 89 ~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~ 166 (753)
+++++||+||++|+ |++||....+.+.+.+++.|+||+..+.++.. .++.|++.++.+|+++++|+|+++++..++.
T Consensus 115 ~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~ 193 (376)
T 3hsy_A 115 LIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVN 193 (376)
T ss_dssp HHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHH
T ss_pred HHHhcCCCEEEEEE-eCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHH
Confidence 99999999999999 89999999999999999999999988766432 2367999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCccccch
Q 037761 167 RLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINI 246 (753)
Q Consensus 167 ~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 246 (753)
.+++|++++||..++++||+++........ ........+++++....++.|..++|.++|+++|++.++......|+.
T Consensus 194 ~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 271 (376)
T 3hsy_A 194 DIVDQVITIGKHVKGYHYIIANLGFTDGDL--LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKY 271 (376)
T ss_dssp HHHHHHHHHTSSGGGCEEEECSSBTTSTTG--GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCH
T ss_pred HHHHHHHHcccCCCCcEEEEcCCCccccch--HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccch
Confidence 999999999998888999998743322111 111122234777777777889999999999999988655433346889
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--CCCccccchHHHHHHHHhcccccceeeEEe-eCCccce
Q 037761 247 SGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDF--GSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNGQLES 323 (753)
Q Consensus 247 ~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g~~~~ 323 (753)
+++++|||++++++|++++... .....++ ....+| +....|.+|.+|.++|++++|+|++|+++| ++|++..
T Consensus 272 ~aa~~YDav~~la~Ai~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~ 346 (376)
T 3hsy_A 272 TSALTYDAVQVMTEAFRNLRKQ-RIEISRR----GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRIN 346 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCCSCC----CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCS
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-CCccccC----CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCcc
Confidence 9999999999999999998422 2111110 012233 334567889999999999999999999999 8999888
Q ss_pred eEEEEEEEeccc-eEEEEeecCCCcc
Q 037761 324 SVFEIVNVIGTG-RVVGYWTSEKGLT 348 (753)
Q Consensus 324 ~~y~i~~~~~~~-~~vg~~~~~~~~~ 348 (753)
..|+|+++.+++ ++||.|++..++.
T Consensus 347 ~~~~i~~~~~~g~~~VG~w~~~~g~~ 372 (376)
T 3hsy_A 347 YTINIMELKTNGPRKIGYWSEVDKMV 372 (376)
T ss_dssp CEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred ceEEEEEecCCCceEEEEEcCCCCce
Confidence 899999999888 9999999988764
No 4
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=6.4e-41 Score=367.34 Aligned_cols=334 Identities=21% Similarity=0.321 Sum_probs=280.2
Q ss_pred CCCChHHHHHHHHHHHhc-CCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKK-FQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDSLQVKA 85 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~-~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~~~~~a 85 (753)
|+|+|.+|+.++++|+.+ ++|.+||||.+|+++.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+
T Consensus 65 ~~~~~~~a~~~a~~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~ 144 (433)
T 4f11_A 65 TECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPA 144 (433)
T ss_dssp CTTCHHHHHHHHHHHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHH
Confidence 889999999999999997 49999999999999999999999999999999999999997 5799999999999999999
Q ss_pred HHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHH
Q 037761 86 ISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALA 165 (753)
Q Consensus 86 ~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~ 165 (753)
++++++++||++|++|++|++||....+.+++.+++.|+||+..+.++ .|+...+.+|+++++|+|+++++..++
T Consensus 145 ~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~ 219 (433)
T 4f11_A 145 ILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMA 219 (433)
T ss_dssp HHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHH
T ss_pred HHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHH
Confidence 999999999999999999999999999999999999999999988876 278889999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCc----ccc-------cccCCChhHHhhcccEEEEEEeCCCC--------hhhhHHHH
Q 037761 166 SRLFALVAKNGMMSKGYTWIVTAC----LSN-------SLNVLDSEVIDSMEGVLGVRSHLPKS--------KELGLFDR 226 (753)
Q Consensus 166 ~~~~~~a~~~g~~~~~~~wi~~~~----~~~-------~~~~~~~~~~~~~~g~i~~~~~~~~~--------~~~~~F~~ 226 (753)
..++++++++|+...+++||+++. |.. ..........+..+|++++..+.+.. +..++|.+
T Consensus 220 ~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~ 299 (433)
T 4f11_A 220 AKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYER 299 (433)
T ss_dssp HHHHHHHHHTTCCSTTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHH
Confidence 999999999999877799999988 431 11123345667899999998865422 34788999
Q ss_pred HHHHh-hCCCCCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhc
Q 037761 227 RWKSK-LHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNT 305 (753)
Q Consensus 227 ~~~~~-~~~~~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 305 (753)
+|+++ ++. .++.+++.+||||+++|+||+++..+..... .+. ..+......+.++++|.++|+++
T Consensus 300 ~y~~~~~~~--------~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~-----~~~-~l~~~~~~~~~~~~~l~~~l~~~ 365 (433)
T 4f11_A 300 EYNNKRSGV--------GPSKFHGYAYDGIWVIAKTLQRAMETLHASS-----RHQ-RIQDFNYTDHTLGRIILNAMNET 365 (433)
T ss_dssp HHHHHHTTS--------CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS-----SCC-CGGGCSSCCHHHHHHHHHHHHTC
T ss_pred HHHHhcCCC--------CcccchhhHHHHHHHHHHHHHHHHHHHhccC-----CCC-cccccccccHHHHHHHHHHHHhc
Confidence 99988 565 7888999999999999999999843210000 000 00101112345789999999999
Q ss_pred ccccceeeEEeeCCccceeEEEEEEEeccc-eEEEEeecCCCcccccccCccCCCCceecCCCC
Q 037761 306 QFKGLSGEFHLVNGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDS 368 (753)
Q Consensus 306 ~f~g~~G~v~f~~g~~~~~~y~i~~~~~~~-~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~ 368 (753)
+|.|++|++.|++|++ ...|.|+++++++ ++||.|++... .|.+ +.+.|.|+++.
T Consensus 366 ~f~G~tG~v~f~~Gd~-~~~~~I~~~~~g~~~~VG~~~~~~~---~l~~----~~~~i~W~~~~ 421 (433)
T 4f11_A 366 NFFGVTGQVVFRNGER-MGTIKFTQFQDSREVKVGEYNAVAD---TLEI----INDTIRFQGSE 421 (433)
T ss_dssp EEEETTEEEEEETTEE-ECEEEEEEEETTEEEEEEEEETTTT---EEEE----CTTTCCCSSSS
T ss_pred EEEccceEEEEecCce-eeeEEEEEEECCceEEEEEEECCCC---eEEE----eCCceECCCCC
Confidence 9999999999999998 5899999999877 99999986432 3333 45689999886
No 5
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=367.39 Aligned_cols=334 Identities=20% Similarity=0.315 Sum_probs=273.0
Q ss_pred CCCChHHHHHHHHHHHhc------------------------CCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCC
Q 037761 8 KQFKDCGKLILAVDLLKK------------------------FQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPA 63 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~------------------------~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~ 63 (753)
++++|.+|+.++.+|+++ ++|+|||||.+|+++.+++++++.+++|+|+++++++.
T Consensus 73 ~~~~~~~a~~~~~~ll~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~ 152 (479)
T 3sm9_A 73 TCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAK 152 (479)
T ss_dssp CTTCHHHHHHHHHHHHHTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGG
T ss_pred cCCChHHHHHHHHHHHhCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCcc
Confidence 889999999999999986 57999999999999999999999999999999999999
Q ss_pred CCC-CCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHH
Q 037761 64 LSP-TEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQIS 142 (753)
Q Consensus 64 l~~-~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~ 142 (753)
+++ ..|||+||+.|++..++.+++++++++||+||++|++|++||....+.+++++++.|+||+..+.++...+..|+.
T Consensus 153 lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~ 232 (479)
T 3sm9_A 153 LSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYD 232 (479)
T ss_dssp GGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHH
T ss_pred ccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHH
Confidence 997 5799999999999999999999999999999999999999999999999999999999999999998655578999
Q ss_pred HHH-HHHhcCCccEEEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhh
Q 037761 143 KEL-SKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKEL 221 (753)
Q Consensus 143 ~~l-~~l~~~~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 221 (753)
..+ +.+++++||||+++++..++..++++++++|+. ++||+++.|........ ...+.+.|++++..+..+.|++
T Consensus 233 ~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf 308 (479)
T 3sm9_A 233 SVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHVAYGAITLELASQPVRQF 308 (479)
T ss_dssp HHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCCHHH
T ss_pred HHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-cccccCceEEEEEeccCCCcch
Confidence 999 668889999999999999999999999999984 89999999975321111 1235678999999999999998
Q ss_pred hHHH---------------HHHHHhhCCCCCCC------Cc---------cccchhHHHHHHHHHHHHHHHHHhcC--CC
Q 037761 222 GLFD---------------RRWKSKLHSMKPNS------SV---------TEINISGLWAYDTIFALAKAVEKILS--PI 269 (753)
Q Consensus 222 ~~F~---------------~~~~~~~~~~~~~~------~~---------~~~~~~~~~~ydAv~~~a~Al~~~~~--~~ 269 (753)
++|+ +.|+..|+|..+.. +. .........+|||||++|+|||+++. +.
T Consensus 309 ~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~ 388 (479)
T 3sm9_A 309 DRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP 388 (479)
T ss_dssp HHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcC
Confidence 8875 45888899864321 00 01123346899999999999999964 21
Q ss_pred CCCCCCCCCCCCCCCccCCCccccchHHHH-HHHHhcccccc-------eeeEEe-eCCccceeEEEEEEEec-cc----
Q 037761 270 NPSIVNPSNPSESTTDFGSLGFSRIGHILC-NQILNTQFKGL-------SGEFHL-VNGQLESSVFEIVNVIG-TG---- 335 (753)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~f~g~-------~G~v~f-~~g~~~~~~y~i~~~~~-~~---- 335 (753)
.. ...|... ...++++|+ ++|++++|.+. .+.+.| ++|+. ...|+|+||+. ++
T Consensus 389 ~~-----------~~~c~~~-~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~ 455 (479)
T 3sm9_A 389 NT-----------TKLCDAM-KILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSY 455 (479)
T ss_dssp TC-----------SSCCHHH-HSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEE
T ss_pred CC-----------CcCCCCC-CCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEE
Confidence 11 1122211 124678999 99999999987 556899 89998 68999999983 22
Q ss_pred eEEEEeecCCCcccccccCccCCCCceecCCCC
Q 037761 336 RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDS 368 (753)
Q Consensus 336 ~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~ 368 (753)
++||.|+ +.|.+ +.+.|.|+++.
T Consensus 456 ~~VG~~~------~~l~i----~~~~I~W~~~~ 478 (479)
T 3sm9_A 456 LKVGHWA------ETLSL----DVNSIHWSRNS 478 (479)
T ss_dssp EEEEEES------SSEEE----CGGGCCCC---
T ss_pred EEEEEEe------ceEEE----ecceeEeCCCC
Confidence 8999997 23443 56889998763
No 6
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.1e-39 Score=361.39 Aligned_cols=344 Identities=19% Similarity=0.339 Sum_probs=270.5
Q ss_pred CCCChHHHHHHHHHHH----------------------------hcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecC
Q 037761 8 KQFKDCGKLILAVDLL----------------------------KKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFE 59 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li----------------------------~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a 59 (753)
+++++..|++++.+|+ .+++|.|||||.+|+++.+++++++.+++|+|++++
T Consensus 81 ~~~~~~~a~~~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a 160 (496)
T 3ks9_A 81 SCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSA 160 (496)
T ss_dssp CTTCHHHHHHHHHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSC
T ss_pred cCCCcHHHHHHHHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCc
Confidence 7899999999999998 467999999999999999999999999999999999
Q ss_pred CCCCCCC-CCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCch
Q 037761 60 TSPALSP-TEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAED 138 (753)
Q Consensus 60 ~~~~l~~-~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 138 (753)
+++.+++ ..|||+||+.|++..++.+++++++++||+||++|++|++||+...+.+++++++.|+||++.+.++...+.
T Consensus 161 ~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~ 240 (496)
T 3ks9_A 161 TSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGE 240 (496)
T ss_dssp CCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCH
T ss_pred CCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCH
Confidence 9999997 579999999999999999999999999999999999999999999999999999999999999988755567
Q ss_pred hhHHHHHHHHhcC--CccEEEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC
Q 037761 139 FQISKELSKLSTM--QTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP 216 (753)
Q Consensus 139 ~d~~~~l~~l~~~--~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 216 (753)
.|+..++.+|+++ .++||++++...++..+++++++.|+. ..++||++++|........ .....+.|+++++.+.+
T Consensus 241 ~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~-~k~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~ 318 (496)
T 3ks9_A 241 KSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSP 318 (496)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCC-SCCEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCC-CcEEEEEechhcccccccc-ccccccCceEEEeccCC
Confidence 8999999999974 889999999999999999999999985 3368999999875422211 23356889999999999
Q ss_pred CChhhhHHHH---------------HHHHhhCCCCCCC----------Cc--c------ccchhHHHHHHHHHHHHHHHH
Q 037761 217 KSKELGLFDR---------------RWKSKLHSMKPNS----------SV--T------EINISGLWAYDTIFALAKAVE 263 (753)
Q Consensus 217 ~~~~~~~F~~---------------~~~~~~~~~~~~~----------~~--~------~~~~~~~~~ydAv~~~a~Al~ 263 (753)
+.|.+++|++ .|+..|+|..+.. +. . .........|+|||++|+|||
T Consensus 319 ~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh 398 (496)
T 3ks9_A 319 EVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQ 398 (496)
T ss_dssp CCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHH
T ss_pred cCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999998863 4888899864321 10 0 011123469999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceee-EEe-eCCccceeEEEEEEEec--cc----
Q 037761 264 KILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGE-FHL-VNGQLESSVFEIVNVIG--TG---- 335 (753)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~-v~f-~~g~~~~~~y~i~~~~~--~~---- 335 (753)
+++.+... .. ...|..... .++++|++.|++++|.+.+|+ +.| ++|+. ...|+|+||+. ++
T Consensus 399 ~m~~~~~~---~~------~~~c~~~~~-~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~ 467 (496)
T 3ks9_A 399 NMHHALCP---GH------VGLCDAMKP-IDGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDY 467 (496)
T ss_dssp HHHHHHST---TC------SSCCGGGSS-CCHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEE
T ss_pred HHHhccCC---CC------CCCCcCCCC-CCHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEE
Confidence 99632100 00 112222212 367899999999999999996 888 89998 68999999983 22
Q ss_pred eEEEEeecCCCcccccccCccCCCCceecCCCCCCCCCc
Q 037761 336 RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTG 374 (753)
Q Consensus 336 ~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~ 374 (753)
++||.|+. +.|.+ +.+.| |..+.+++|++
T Consensus 468 ~~VG~~~~-----~~l~i----~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 468 VHVGTWHE-----GVLNI----DDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EEEEEEET-----TEEEE----CTTTC------------
T ss_pred EEEEEEeC-----CeEEE----ehhhc-ccCCCCCCCCC
Confidence 89999973 23443 45667 87777778753
No 7
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.9e-39 Score=365.59 Aligned_cols=352 Identities=20% Similarity=0.304 Sum_probs=285.3
Q ss_pred CCCChHHHHHHHHHHHh------------------------cCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCC
Q 037761 8 KQFKDCGKLILAVDLLK------------------------KFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPA 63 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~------------------------~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~ 63 (753)
+++++..|+.++.++++ +++|.|||||.+|+++.+++++++.+++|+|+++++++.
T Consensus 74 ~~~~~~~a~~~a~~~l~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~ 153 (555)
T 2e4u_A 74 TCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAK 153 (555)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGG
T ss_pred CCCChHHHHHHHHHHHhCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCc
Confidence 78999999999999885 679999999999999999999999999999999999999
Q ss_pred CCC-CCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHH
Q 037761 64 LSP-TEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQIS 142 (753)
Q Consensus 64 l~~-~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~ 142 (753)
|++ ..|||+||+.|++..++.+++++++++||+||++|++|++||....+.+++++++.|+||++.+.++...+..++.
T Consensus 154 lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~ 233 (555)
T 2e4u_A 154 LSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYD 233 (555)
T ss_dssp GGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHH
T ss_pred cCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHH
Confidence 997 5799999999999999999999999999999999999999999999999999999999999999887544578999
Q ss_pred HHHHHHhc-CCccEEEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhh
Q 037761 143 KELSKLST-MQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKEL 221 (753)
Q Consensus 143 ~~l~~l~~-~~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 221 (753)
.++.+|++ +++|||++++...++..++++++++|+ +++||+++.|........ ...+.++|++++..+..+.|.+
T Consensus 234 ~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf 309 (555)
T 2e4u_A 234 SVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHVAYGAITLELASHPVRQF 309 (555)
T ss_dssp HHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCCCHHH
T ss_pred HHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc-cchhhcceEEEEEeccCCCCcH
Confidence 99999964 799999999999999999999999986 689999998875432221 2245688999999877666665
Q ss_pred hH---------------HHHHHHHhhCCCCCCC------C----c-----cccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 037761 222 GL---------------FDRRWKSKLHSMKPNS------S----V-----TEINISGLWAYDTIFALAKAVEKILSPINP 271 (753)
Q Consensus 222 ~~---------------F~~~~~~~~~~~~~~~------~----~-----~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~ 271 (753)
++ |.+.|+++|+|..+.. + . ..+..+++.+||||+++|+|||++..+...
T Consensus 310 ~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~ 389 (555)
T 2e4u_A 310 DRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP 389 (555)
T ss_dssp HHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcC
Confidence 54 4556888898853210 0 0 014567899999999999999998421100
Q ss_pred CCCCCCCCCCCCCccCCCccccchHHHHH-HHHhcccc------cceee-EEe-eCCccceeEEEEEEEec--cc---eE
Q 037761 272 SIVNPSNPSESTTDFGSLGFSRIGHILCN-QILNTQFK------GLSGE-FHL-VNGQLESSVFEIVNVIG--TG---RV 337 (753)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~f~------g~~G~-v~f-~~g~~~~~~y~i~~~~~--~~---~~ 337 (753)
.. ...|... ...++++|++ +|++++|. |++|. +.| ++|++ ...|+|++|+. ++ ++
T Consensus 390 ~~---------~~~~~~~-~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~ 458 (555)
T 2e4u_A 390 QT---------TKLCDAM-KILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLK 458 (555)
T ss_dssp TC---------SSCCGGG-TSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEE
T ss_pred CC---------Ccccccc-CCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEE
Confidence 00 0111111 1256789998 99999999 99998 999 89998 58899999963 22 89
Q ss_pred EEEeecCCCcccccccCccCCCCceecCCCCCCCCCcccccceEEeeccCCCCcc
Q 037761 338 VGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQ 392 (753)
Q Consensus 338 vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~l~v~~~~~~~~~~ 392 (753)
||.|+. .|.+ +.+.|.|+. .++| .-+|...|.|+|+.
T Consensus 459 VG~~~~------~l~i----~~~~I~W~~--~~~P------~S~CS~~C~pG~rk 495 (555)
T 2e4u_A 459 VGHWAE------TLSL----DVDSIHWSR--NSVP------TSQCSDPCAPNEMK 495 (555)
T ss_dssp EEEESS------SEEC----CGGGCCCTT--SSCC------CCCSSCCCCTTTEE
T ss_pred EEEecc------eEEE----eccccccCC--CCCc------ceeeCCCCCCCeee
Confidence 999984 2332 567899987 4677 44677777777653
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.3e-39 Score=347.49 Aligned_cols=327 Identities=14% Similarity=0.240 Sum_probs=268.3
Q ss_pred eeec-CCC-ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHH
Q 037761 4 LLLL-KQF-KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSL 81 (753)
Q Consensus 4 l~~~-d~~-~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~ 81 (753)
++.. +++ ||.+|+.++|+|+++ +|.+||||.+|+++.++++++..+++|+|+++ ++.++ ..+|.||+.|+
T Consensus 43 ~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~--- 114 (384)
T 3saj_A 43 PQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFYERRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE--- 114 (384)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECCCHHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---
T ss_pred eeeEecccCchhhHHHHHHHHHhc-CeEEEECCCCHHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---
Confidence 4444 476 999999999999987 99999999999999999999999999999984 34443 45678888887
Q ss_pred HHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 82 QVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 82 ~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
++.+++++++++||+||++|+ |++||....+.+.+.+++.|+||+..+.++. ++.|+++++.+|+++++|+|+++++
T Consensus 115 ~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~vii~~~~ 191 (384)
T 3saj_A 115 LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTT--TEEGYRMLFQDLEKKKERLVVVDCE 191 (384)
T ss_dssp CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEEGGGC--CHHHHHHTTTTCCSCSEEEEEEECC
T ss_pred HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHHHHhhhcCceEEEEEeccC--CchhHHHHHHHHhccCCcEEEEEcC
Confidence 899999999999999999999 7799999999999999999999998885543 4779999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCc
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSV 241 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~ 241 (753)
..++..++++++++||..++++||+++.+...... ........|++++..+.+..|..++|.++|++++++.+|....
T Consensus 192 ~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~ 269 (384)
T 3saj_A 192 SERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL--NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDW 269 (384)
T ss_dssp GGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH--HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH--HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCC
Confidence 99999999999999998888999999864432211 2334455678888888888999999999999999875543333
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC--ccccchHHHHHHHHhcccccceeeEEe-eC
Q 037761 242 TEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSL--GFSRIGHILCNQILNTQFKGLSGEFHL-VN 318 (753)
Q Consensus 242 ~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~ 318 (753)
..++.+++++|||++++++|++++... ..... ......+|... ..|.+|.+|.++|++++|+|++|.++| +|
T Consensus 270 ~~~~~~aa~~YDav~~~a~Al~~~~~~-~~~~~----~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~ 344 (384)
T 3saj_A 270 KRPKYTSALTYDGVKVMAEAFQSLRRQ-RIDIS----RRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEK 344 (384)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCC----CCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTT
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhh-cccee----cCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCC
Confidence 356788999999999999999998432 11100 00112334332 346789999999999999999999999 89
Q ss_pred CccceeEEEEEEEeccc-eEEEEeecCCCcc
Q 037761 319 GQLESSVFEIVNVIGTG-RVVGYWTSEKGLT 348 (753)
Q Consensus 319 g~~~~~~y~i~~~~~~~-~~vg~~~~~~~~~ 348 (753)
|++....|.|+++++++ .+||.|++..++.
T Consensus 345 G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~ 375 (384)
T 3saj_A 345 GRRTNYTLHVIEMKHDGIRKIGYWNEDDKFV 375 (384)
T ss_dssp SBBCSCCEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CCcccceEEEEEeccCCcceeEEEcCCCCcc
Confidence 99988899999999988 9999999877654
No 9
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-37 Score=336.88 Aligned_cols=324 Identities=15% Similarity=0.218 Sum_probs=267.0
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
+.+++..+.+++|+|+++ +|.|||||.+|+++.+++++++.++||+++++++.+.. ..|+++ +.|. ++++++
T Consensus 51 ~~~~~~~~~~~~~~l~~~-~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~--~~~~---~~~a~~ 122 (389)
T 4gpa_A 51 ETANSFAVTNAFCSQYSR-GVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQ--LRPS---LRGALL 122 (389)
T ss_dssp SSCCHHHHHHHHHHHHHT-TCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEE--CSCC---CHHHHH
T ss_pred CCchHHHHHHHHHHHHhc-CCEEEEeCCccHHHHHHHHHHHHhCCCceecccccccc--ccCCcc--ccCC---HHHHHH
Confidence 457788999999999986 99999999999999999999999999999987655432 344444 4444 457899
Q ss_pred HHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHH
Q 037761 88 AVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASR 167 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~ 167 (753)
++++++||+||++||+++.++. ..+.+.+.+++.|+||+..+.++. +..+++..+.++++.++++|+++++..++..
T Consensus 123 ~l~~~~~w~~vaii~~~d~~~~-~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~ 199 (389)
T 4gpa_A 123 SLLDHYEWNCFVFLYDTDRGYS-ILQAIMEKAGQNGWHVSAICVENF--NDVSYRQLLEELDRRQEKKFVIDCEIERLQN 199 (389)
T ss_dssp HHHHHTTCCEEEEEECSTTCSH-HHHHHHHHHHTTTCEEEEEECTTC--CHHHHHHHHHHHHHHTCCEEEEECCHHHHHH
T ss_pred HHHHHcCCcEEEEEEecchhhH-HHHHHHHHHHhcCceEEEEeecCC--cchhHHHHHHHhhccCCcEEEEEechhHHHH
Confidence 9999999999999998777665 566788899999999998887664 4789999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCccccchh
Q 037761 168 LFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINIS 247 (753)
Q Consensus 168 ~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 247 (753)
++++|+++|+..++++|+.++.+...... ........|+.++....+..|.+++|.++|++.+.+..+. ....++.+
T Consensus 200 il~~a~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~ 276 (389)
T 4gpa_A 200 ILEQIVSVGKHVKGYHYIIANLGFKDISL--ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPG-SETPPKYT 276 (389)
T ss_dssp HHHHHHHHTCSBTTCEEEECSSBGGGSCC--HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTT-TTSCCCHH
T ss_pred HHHHHHHhCCCCCceEEEEeCccccchhh--hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhccc-CCCChhHH
Confidence 99999999999999999999887654332 4456677788888888889999999999999988764432 23467889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-eCCccceeEE
Q 037761 248 GLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNGQLESSVF 326 (753)
Q Consensus 248 ~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g~~~~~~y 326 (753)
++++||||+++|+||++++.+........+ .....|.....|.+|..|.++|++++|+|++|+|.| ++|++....|
T Consensus 277 ~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~ 353 (389)
T 4gpa_A 277 SALTYDGVLVMAETFRSLRRQKIDISRRGN---AGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTM 353 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCTTC---CCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCC---ccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEE
Confidence 999999999999999999654322111111 112334455678899999999999999999999999 9999977899
Q ss_pred EEEEEeccc-eEEEEeecCCCcc
Q 037761 327 EIVNVIGTG-RVVGYWTSEKGLT 348 (753)
Q Consensus 327 ~i~~~~~~~-~~vg~~~~~~~~~ 348 (753)
+|+|+++++ ++||.|++..++.
T Consensus 354 ~I~~l~~~~~~~VG~W~~~~gl~ 376 (389)
T 4gpa_A 354 DVFELKSTGPRKVGYWNDMDKLV 376 (389)
T ss_dssp EEEEEETTEEEEEEEEETTTEEE
T ss_pred EEEEEECCEEEEEEEEECCCCeE
Confidence 999999989 9999999887654
No 10
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=4.6e-38 Score=340.25 Aligned_cols=320 Identities=19% Similarity=0.280 Sum_probs=267.3
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAV 89 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~ 89 (753)
.|+..+..++|+|+++ +|.+||||.+|+++.+++++++.+++|+|+++++++.+++. .+|+||+.|++..++.+++++
T Consensus 55 ~d~~~~~~~a~~l~~~-~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~ 132 (395)
T 3h6g_A 55 YDSFEASKKACDQLSL-GVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDL 132 (395)
T ss_dssp TCHHHHHHHHHHHHHH-CCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHH
T ss_pred cChHHHHHHHHHhhhc-CcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHH
Confidence 7999999999999976 99999999999999999999999999999999999988863 578999999999999999999
Q ss_pred HHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHH
Q 037761 90 LQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLF 169 (753)
Q Consensus 90 l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~ 169 (753)
++++||+||++|+ |++||....+.+++.+++.|+|++..+ ++.+ +.|++.++++|+++++|+|+++++..++..++
T Consensus 133 ~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~ 208 (395)
T 3h6g_A 133 VQFFKWKTVTVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQ-LPAD--TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGIL 208 (395)
T ss_dssp HHHTTCSEEEEEE-SSTHHHHHTHHHHTGGGTSSCEEEEEE-CCSS--GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred HHHCCCeEEEEEE-EChhHHHHHHHHHHhhhcCCceEEEEE-eCCC--chhHHHHHHHHhhcCCeEEEEECCHHHHHHHH
Confidence 9999999999998 678999999999999999999999876 7654 77999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCC----ccccc
Q 037761 170 ALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSS----VTEIN 245 (753)
Q Consensus 170 ~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~----~~~~~ 245 (753)
+|++++||..+.++|++++.......... ......++.++....+..|..++|.++|+++++...|... ...++
T Consensus 209 ~qa~~~gl~~~~~~~i~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~ 286 (395)
T 3h6g_A 209 KQALAMGMMTEYYHYIFTTLDLFALDVEP--YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMT 286 (395)
T ss_dssp HHHHHTTCCSTTCEEEECCTTGGGBCCTT--TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCC
T ss_pred HHHHHccccCCceEEEEecCceeEechHH--hccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccc
Confidence 99999999988999999865433222111 1111223566666777789999999999987754433211 12367
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-e-CCccce
Q 037761 246 ISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-V-NGQLES 323 (753)
Q Consensus 246 ~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~-~g~~~~ 323 (753)
.+++.+|||++++++|++++ +.... ...+|.....|.++.+|.++|++++|+|++|.++| + +|++..
T Consensus 287 ~~aa~~YDav~~~a~Al~~a-~~~~~----------~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~ 355 (395)
T 3h6g_A 287 TDAALMYDAVHVVSVAVQQF-PQMTV----------SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTD 355 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-TTCCC----------CCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECC
T ss_pred hhHHHHHhHHHHHHHHHHhh-hcCCC----------cCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecC
Confidence 79999999999999999998 33211 13345555678899999999999999999999999 7 999987
Q ss_pred eEEEEEEEeccc-eEEEEeecCCCcc
Q 037761 324 SVFEIVNVIGTG-RVVGYWTSEKGLT 348 (753)
Q Consensus 324 ~~y~i~~~~~~~-~~vg~~~~~~~~~ 348 (753)
..|.|+++++++ ++||.|++..++.
T Consensus 356 ~~~~i~~~~~~~~~~vG~w~~~~g~~ 381 (395)
T 3h6g_A 356 FDLDVISLKEEGLEKIGTWDPASGLN 381 (395)
T ss_dssp CCEEEEEEETTEEEEEEEEETTTEEC
T ss_pred CeEEEEEeccCCceEEEEEcCCCCcc
Confidence 899999999988 9999999888764
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=3.2e-38 Score=340.03 Aligned_cols=309 Identities=18% Similarity=0.291 Sum_probs=247.8
Q ss_pred CCCChHHHHHHHHH-HHhcCCeEEEEc-----CCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcH
Q 037761 8 KQFKDCGKLILAVD-LLKKFQVQAIIG-----PQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDS 80 (753)
Q Consensus 8 d~~~~~~a~~~a~~-Li~~~~V~aviG-----~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~ 80 (753)
|++||.+|+.++++ |+++ +|.|||| |.||.++.+++++++.+++|+|+++++++.+++ ..||++||+.|++.
T Consensus 46 ~~~d~~~a~~~~~~~Li~~-~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~ 124 (384)
T 3qek_A 46 HRPNAIQMALSVCEDLISS-QVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYS 124 (384)
T ss_dssp CCSSHHHHHHHHHHHTGGG-TEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGG
T ss_pred ccCCHHHHHHHHHHHHHHc-CceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChH
Confidence 78999999977655 8886 9999999 678889999999999999999999999999996 67899999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEE-----------EEe-------eccCC-CCchhhH
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRI-----------SHM-------SKIPT-SAEDFQI 141 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v-----------~~~-------~~~~~-~~~~~d~ 141 (753)
.++.+++++++++||+||++|++|++||.+..+.+++++++.|+++ .+. +.++. ..++.|+
T Consensus 125 ~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~ 204 (384)
T 3qek_A 125 HQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNL 204 (384)
T ss_dssp GHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCC
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhH
Confidence 9999999999999999999999999999999999999999999753 221 11110 1235699
Q ss_pred HHHHHHHhcCCccEEEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhh
Q 037761 142 SKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKEL 221 (753)
Q Consensus 142 ~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 221 (753)
+..+.+|+++++|+|+++++..++..++++|+++||...+++||+++.+.... ...+...|++++..+.++.
T Consensus 205 ~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~~~~~--- 276 (384)
T 3qek_A 205 TALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGS-----ALRYAPDGIIGLQLINGKN--- 276 (384)
T ss_dssp HHHHHHHHTSSCCEEEEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGG-----GGSSCCTTCEEEEETTTTC---
T ss_pred HHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHcCCccCCeEEEEeccccccc-----cccccCCccEEEEEcCCCc---
Confidence 99999999999999999999999999999999999987789999999876432 2335678999998865432
Q ss_pred hHHHHHHHHhhCCCCCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc-CCCccccchHHHHH
Q 037761 222 GLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDF-GSLGFSRIGHILCN 300 (753)
Q Consensus 222 ~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 300 (753)
.++.+||||+++|+|||+++.+....... .+| .....|..+..|.+
T Consensus 277 -------------------------~~~~~YdAV~~~a~Al~~~~~~~~~~~~~--------~~c~~~~~~~~~~~~l~~ 323 (384)
T 3qek_A 277 -------------------------ESAHISDAVAVVAQAIHELFEMENITDPP--------RGCVGNTNIWKTGPLFKR 323 (384)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHTSSSCCCCC--------SCCTTCCCCCTTHHHHHH
T ss_pred -------------------------hhHHHHHHHHHHHHHHHHHHhccCCCCCC--------CccccCCCccccHHHHHH
Confidence 26789999999999999996543222111 112 12346788899999
Q ss_pred HHHhccc-ccceeeEEe-eCCccceeEEEEEEEeccc-eEEEEeecCCCcccccccCccCCCCceecCCC
Q 037761 301 QILNTQF-KGLSGEFHL-VNGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGD 367 (753)
Q Consensus 301 ~l~~~~f-~g~~G~v~f-~~g~~~~~~y~i~~~~~~~-~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~ 367 (753)
.++++.| .|++|++.| ++|++....|+|+||++++ ++||.|+.+ .+.+ +.+.|.|+++
T Consensus 324 ~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~-----~l~i----~~~~i~W~~~ 384 (384)
T 3qek_A 324 VLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNGS-----YIIQ----NDRKIIWPGG 384 (384)
T ss_dssp HHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTEEEEEEEECSS-----SEEE----CSSCCCCSCC
T ss_pred HHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCceEEEEEEeCC-----eEee----ccceeeCCCC
Confidence 9999998 999999999 8999877899999999878 999999833 2332 5678999864
No 12
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.7e-39 Score=359.14 Aligned_cols=335 Identities=20% Similarity=0.365 Sum_probs=242.5
Q ss_pred CCCChHHHHHHHHHHHhc----------------------CCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCC
Q 037761 8 KQFKDCGKLILAVDLLKK----------------------FQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS 65 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~----------------------~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~ 65 (753)
++++|.+|++++.+|+++ ++|.|||||.+|+++.+++++++.+++|+|+++++++.++
T Consensus 76 ~~~~~~~a~~~a~~ll~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~ls 155 (481)
T 3mq4_A 76 TCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELS 155 (481)
T ss_dssp CTTCHHHHHHHHGGGGGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGG
T ss_pred CCCChHHHHHHHHHHHhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCcccc
Confidence 789999999999999975 6899999999999999999999999999999999999999
Q ss_pred C-CCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHh-CCeEEEEeeccCCCCchh--hH
Q 037761 66 P-TEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQE-NDIRISHMSKIPTSAEDF--QI 141 (753)
Q Consensus 66 ~-~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~--d~ 141 (753)
+ ..|||+||+.|++..++.+++++++++||+||++|++|++||+...+.+++.+++ .|+||++.+.++...... |+
T Consensus 156 d~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~ 235 (481)
T 3mq4_A 156 DDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDF 235 (481)
T ss_dssp CTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CC
T ss_pred CcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHH
Confidence 7 6899999999999999999999999999999999999999999999999999885 799999998887543334 88
Q ss_pred HHHHHHHh-cCCccEEEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChh
Q 037761 142 SKELSKLS-TMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKE 220 (753)
Q Consensus 142 ~~~l~~l~-~~~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 220 (753)
...+.+++ +++||||++++...++..+++++++.|+.. +++||+++.|........ .....+.|++++..+..+.|.
T Consensus 236 ~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipg 313 (481)
T 3mq4_A 236 DRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRATVEG 313 (481)
T ss_dssp SHHHHCCCCC----CEEECCCSSHHHHHC-----------CCCEEEC------------------CCCEEEEECCCCCHH
T ss_pred HHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccccc-ccchhhccEEEEecCcCcccc
Confidence 89999998 589999999999999999999999999853 489999999975432222 234678999999999999999
Q ss_pred hhHHHH---------------HHHHhhCCCCCCC----------Cc--c--------ccchhHHHHHHHHHHHHHHHHHh
Q 037761 221 LGLFDR---------------RWKSKLHSMKPNS----------SV--T--------EINISGLWAYDTIFALAKAVEKI 265 (753)
Q Consensus 221 ~~~F~~---------------~~~~~~~~~~~~~----------~~--~--------~~~~~~~~~ydAv~~~a~Al~~~ 265 (753)
+++|+. .|+..|+|..+.. +. . ........+|||||++|+|||++
T Consensus 314 f~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m 393 (481)
T 3mq4_A 314 FDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHM 393 (481)
T ss_dssp HHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHH
Confidence 998753 4888888865321 10 0 11134567999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhccccccee-eEEe-eCCccceeEEEEEEEec--c---c-eE
Q 037761 266 LSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSG-EFHL-VNGQLESSVFEIVNVIG--T---G-RV 337 (753)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G-~v~f-~~g~~~~~~y~i~~~~~--~---~-~~ 337 (753)
+.+... .. ...|.... ..++++|++.|++++|.+.+| .+.| ++|+. ...|+|+||+. + . ++
T Consensus 394 ~~~~~~---~~------~~~c~~~~-~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~ 462 (481)
T 3mq4_A 394 NKDLCA---DY------RGVCPEME-QAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRL 462 (481)
T ss_dssp HHHHCC-------------CCHHHH-TSCHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEE
T ss_pred HHhhCC---CC------CCCCCCCC-CcCHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEE
Confidence 642100 00 11222211 236789999999999999999 6899 89998 68999999983 2 2 78
Q ss_pred EEEeecCCCcccccccCccCCCCceecC
Q 037761 338 VGYWTSEKGLTQTLDLTSKNDLKQIIWP 365 (753)
Q Consensus 338 vg~~~~~~~~~~~~~~~~~~~~~~i~w~ 365 (753)
||.|+. .|.+ +.+.|.|+
T Consensus 463 VG~~~~------~l~i----~~~~i~W~ 480 (481)
T 3mq4_A 463 IGQWTD------ELQL----NIEDMQWG 480 (481)
T ss_dssp EEEEET------TEEE----ECSCC---
T ss_pred EEEEcC------ccEe----cccccccC
Confidence 999982 2333 46778996
No 13
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=2.7e-38 Score=346.86 Aligned_cols=330 Identities=17% Similarity=0.199 Sum_probs=272.6
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcHHHHHHHH
Q 037761 9 QFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 9 ~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~~~~~a~~ 87 (753)
+|++.+|+..+.+++.+++|.+||||.+|+++.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+++
T Consensus 59 ~c~~~~a~~~a~~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~ 138 (435)
T 1dp4_A 59 VCSDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVT 138 (435)
T ss_dssp SBCTTHHHHHHHHHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHH
Confidence 4777899999999998889999999999999999999999999999999999999997 469999999999999999999
Q ss_pred HHHHHcCCeEEEEE------EeeCCcccchHHHHHHHHHh-CCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 88 AVLQNFSWHEVVLM------YEDTNYGAGFISFLVDELQE-NDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 88 ~~l~~~~w~~vail------~~d~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
++++++||+||++| ++|++|| ...+.+.+++++ .|+||+..+.++. +..|++.++++|++ ++|+|++++
T Consensus 139 ~~l~~~~w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~~-~~~viv~~~ 214 (435)
T 1dp4_A 139 ALHRRLGWEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVEG--DPDHYPKLLRAVRR-KGRVIYICS 214 (435)
T ss_dssp HHHHHHTCCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECTT--CGGGHHHHHHHHHH-HCSEEEEES
T ss_pred HHHHHCCCcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEecC--chhhHHHHHHHHHh-hCceEEEec
Confidence 99999999999999 6777788 556778888888 9999998876543 46799999999998 999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCccccccc---------------CCChhHHhhcccEEEEEEeCCCChhhhHHH
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLN---------------VLDSEVIDSMEGVLGVRSHLPKSKELGLFD 225 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~---------------~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~ 225 (753)
...++..++++|+++|+..++++||.++.+..... .......++.+|++++....++.+.+++|.
T Consensus 215 ~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 294 (435)
T 1dp4_A 215 SPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFL 294 (435)
T ss_dssp CHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHH
Confidence 99999999999999999766799999987764321 011235567889998888777788999999
Q ss_pred HHHHHhhC----CCCCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHH
Q 037761 226 RRWKSKLH----SMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQ 301 (753)
Q Consensus 226 ~~~~~~~~----~~~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (753)
++|+++++ |... ...++.+++.+||||+++|+||++++.+.. .+.++++|+++
T Consensus 295 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~ydav~~~a~Al~~~~~~~~--------------------~~~~~~~l~~~ 351 (435)
T 1dp4_A 295 KQLKLLADKKFNFTVE---DGLKNIIPASFHDGLLLYVQAVTETLAQGG--------------------TVTDGENITQR 351 (435)
T ss_dssp HHHHHHHHHHHCCCCC---CSGGGHHHHHHHHHHHHHHHHHHHHHHTTC--------------------CTTCHHHHHHT
T ss_pred HHHHHHhcCCCCcccc---cchhhHHHHHHHHHHHHHHHHHHHHHHcCC--------------------CCCCHHHHHHH
Confidence 99988764 2111 113677899999999999999999843210 12467899999
Q ss_pred HHhcccccceeeEEe-eCCccceeEEEEEEEe--ccc-eEEEEeecCCCcccccccCccCCCCceecCCCCCCCCCc
Q 037761 302 ILNTQFKGLSGEFHL-VNGQLESSVFEIVNVI--GTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTG 374 (753)
Q Consensus 302 l~~~~f~g~~G~v~f-~~g~~~~~~y~i~~~~--~~~-~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~ 374 (753)
|++++|.|++|.+.| ++|++ ...|.|+++. ++. ++||.|+...+ .+.+ .+.+.|.|+++ ++|.+
T Consensus 352 l~~~~f~g~~G~v~fd~~g~~-~~~~~i~~~~~~~g~~~~vg~~~~~~~---~l~~---~~~~~i~W~~~--~~P~~ 419 (435)
T 1dp4_A 352 MWNRSFQGVTGYLKIDRNGDR-DTDFSLWDMDPETGAFRVVLNYNGTSQ---ELMA---VSEHKLYWPLG--YPPPD 419 (435)
T ss_dssp TTTEEEEETTEEEEECTTSBB-CCCEEEEEECTTTCCEEEEEEECTTTC---CEEE---STTCCCCCTTS--SCCCS
T ss_pred HhCceeeccceeEEECCCCCc-cceeEEEEecCCCCcEEEEEEecCCCc---eEEE---cCCceeeCCCC--CCCCC
Confidence 999999999999999 89998 4789999993 344 99999988764 2222 14578999987 56654
No 14
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=6.4e-38 Score=338.72 Aligned_cols=323 Identities=16% Similarity=0.225 Sum_probs=259.9
Q ss_pred CCCChH-HHHHHHHHHHhcCCeEEEEcCCCCCc-HHHHHHhhccCCccEEeecCCCCCCCCCCCCce--EEEecCcHHHH
Q 037761 8 KQFKDC-GKLILAVDLLKKFQVQAIIGPQIPAA-APFLVELGEKAQVPIISFFETSPALSPTEHPFF--IRVTQNDSLQV 83 (753)
Q Consensus 8 d~~~~~-~a~~~a~~Li~~~~V~aviG~~~s~~-~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~--fr~~p~~~~~~ 83 (753)
+++++. .+..++|++++ ++|.+||||.+|+. +.+++++++.+++|+|++++++. ....+|++ ||+.|++..++
T Consensus 51 ~~~~~~~~~~~~~~~l~~-~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~ 127 (393)
T 3om0_A 51 LQRDSQYETTDTMCQILP-KGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVS 127 (393)
T ss_dssp CCSSCHHHHHHHHHHHGG-GCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHH
T ss_pred cCCCchhHHHHHHHHHHh-cCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHH
Confidence 678764 56788999985 59999999999965 57999999999999999987641 12568888 99999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH
Q 037761 84 KAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA 163 (753)
Q Consensus 84 ~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~ 163 (753)
.+++++++++||+||++|++|++||..+.+.+ +.+.+.|++++... ++ ++.|++.++.+|+++++|+|+++++..
T Consensus 128 ~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~ 202 (393)
T 3om0_A 128 LAVSRILKSFNYPSASLICAKAECLLRLEELV-RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANAS 202 (393)
T ss_dssp HHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHH
T ss_pred HHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHH
Confidence 99999999999999999999999999887766 45778899997654 43 356899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCccc
Q 037761 164 LASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTE 243 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~ 243 (753)
++..++++|+++||..+.++|+.+++....... . .......|++++....++.|.+++|.++|+++|+..+.......
T Consensus 203 ~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l-~-~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 280 (393)
T 3om0_A 203 ISHLVLRKASELGMTSAFYKYILTTMDFPILHL-D-GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPG 280 (393)
T ss_dssp HHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCC-T-TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCS
T ss_pred HHHHHHHHHHHcCcccCCeEEEEecccccccch-h-hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCC
Confidence 999999999999998888999998765433222 1 12345568888888888889999999999999984322111125
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-eCCccc
Q 037761 244 INISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNGQLE 322 (753)
Q Consensus 244 ~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g~~~ 322 (753)
|+.+++++|||++++++|++++ +.... . .....+|.....|.+|.+|.++|++++|+|++|++.| ++|++.
T Consensus 281 p~~~a~~~YDAv~~la~Al~~~-~~~~~-~------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~ 352 (393)
T 3om0_A 281 PALSAALMFDAVHVVVSAVREL-NRSQE-I------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRT 352 (393)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-TTTSC-C------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBC
T ss_pred CchHHHHHHhHHHHHHHHHHHH-hhccc-C------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCccc
Confidence 7889999999999999999998 43211 1 1113445555678899999999999999999999999 899997
Q ss_pred eeEEEEEEEeccc-eEEEEeecCCCcc
Q 037761 323 SSVFEIVNVIGTG-RVVGYWTSEKGLT 348 (753)
Q Consensus 323 ~~~y~i~~~~~~~-~~vg~~~~~~~~~ 348 (753)
...|+|+++++++ ++||.|++..++.
T Consensus 353 ~~~~~i~~~~~~g~~~VG~w~~~~gl~ 379 (393)
T 3om0_A 353 NYTLRILEKSRQGHREIGVWYSNRTLA 379 (393)
T ss_dssp SCEEEEEEEETTEEEEEEEEECC----
T ss_pred ceeEEEEEeccCCceEeeeEcCCCCcc
Confidence 8899999999888 9999999887654
No 15
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=9.7e-38 Score=342.80 Aligned_cols=328 Identities=18% Similarity=0.235 Sum_probs=259.0
Q ss_pred CCCChHHHHHHHHHHHh---cCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-C-CCCceEEEecCcHHH
Q 037761 8 KQFKDCGKLILAVDLLK---KFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-T-EHPFFIRVTQNDSLQ 82 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~---~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~-~~~~~fr~~p~~~~~ 82 (753)
++|+|. |+..+.+++- +++|.+||||.+|+++.+++++++.+++|+|+++++++.+++ . .|||+||+.|++..+
T Consensus 63 ~~~~~~-a~~~~~~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~ 141 (441)
T 1jdp_A 63 SDCGNR-ALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKM 141 (441)
T ss_dssp CTTSTH-HHHHHHHHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHH
T ss_pred CCCchh-HHHHHHHHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHH
Confidence 779998 7776666552 349999999999999999999999999999999999999997 4 799999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccc---hHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEE
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAG---FISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVH 159 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~ 159 (753)
+.+++++++++||+||++|++|++||+. ..+.+++.+++.|+||+..+.++.+ ..|+...+++|+ +++|||+++
T Consensus 142 ~~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~l~~i~-~~~~vii~~ 218 (441)
T 1jdp_A 142 GEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK--DLDLEDIVRNIQ-ASERVVIMC 218 (441)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS--CCCHHHHHHHHH-HHCSEEEEE
T ss_pred HHHHHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCc--ccCHHHHHHHhh-cCCcEEEEe
Confidence 9999999999999999999999999999 9999999999999999988766533 458999999999 899999999
Q ss_pred eChHHHHHHHHHHHHcCCCCCCEEEEEcC----------cccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHH
Q 037761 160 MNTALASRLFALVAKNGMMSKGYTWIVTA----------CLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWK 229 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~g~~~~~~~wi~~~----------~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~ 229 (753)
++..++..++++++++|+..+.++||+++ .|.... ...........++.++....+..|.+++|.++|+
T Consensus 219 ~~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~ 297 (441)
T 1jdp_A 219 ASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGD-KHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVK 297 (441)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSS-TTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccccCCCCccCC-cccHHHHHHHHhheEEeecCCCCchHHHHHHHHH
Confidence 99999999999999999987789999887 333211 1111122445667777777778899999999999
Q ss_pred HhhCCCCCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhccccc
Q 037761 230 SKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKG 309 (753)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g 309 (753)
++++.. +......++.+++.+||||+++|+||++++.+.. .+.++++|+++|++++|.|
T Consensus 298 ~~~~~~-~~~~~~~~~~~~~~~YdAv~~~A~Al~~~~~~~~--------------------~~~~~~~l~~~l~~~~f~g 356 (441)
T 1jdp_A 298 SSVEKQ-GLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGY--------------------SKKDGGKIIQQTWNRTFEG 356 (441)
T ss_dssp HHHHTT-TCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTC--------------------CTTCHHHHHHHHSSEEEEE
T ss_pred HHHhhC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHhCC--------------------CCCCHHHHHHHHhCCeeEC
Confidence 874321 0000113566889999999999999999842210 1246789999999999999
Q ss_pred ceeeEEe-eCCccceeEEEEEEEec--cc--eEEEEeecCCCcccccccCccCCCCceecCCCC
Q 037761 310 LSGEFHL-VNGQLESSVFEIVNVIG--TG--RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDS 368 (753)
Q Consensus 310 ~~G~v~f-~~g~~~~~~y~i~~~~~--~~--~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~ 368 (753)
++|.+.| ++|++ ...|.|++++. ++ ++||.|++..+... . .....+.|+++.
T Consensus 357 ~~G~v~fd~~Gd~-~~~~~I~~~~~~~~g~~~~VG~~~~~~~~~~---~---~~~~~i~w~g~~ 413 (441)
T 1jdp_A 357 IAGQVSIDANGDR-YGDFSVIAMTDVEAGTQEVIGDYFGKEGRFE---M---RPNVKYPWGPLK 413 (441)
T ss_dssp TTEEEEECTTSBB-CCEEEEEEEEETTTTEEEEEEEEETTTTEEE---E---CC----------
T ss_pred CccceEECCCCCc-cccEEEEecccCCCCceEEEEEEcCCCCeEE---E---CCCceeeCCCCC
Confidence 9999999 89998 58999999974 33 99999998765321 1 134678888764
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=1e-36 Score=323.46 Aligned_cols=308 Identities=16% Similarity=0.269 Sum_probs=238.8
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCC-CCcHHH--HHHhhccCCccEEeecCCCC-CCCC-CCCCceEEEecCcHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQI-PAAAPF--LVELGEKAQVPIISFFETSP-ALSP-TEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~-s~~~~a--v~~i~~~~~vP~is~~a~~~-~l~~-~~~~~~fr~~p~~~~~ 82 (753)
+++||..+..++|+++..++|.||||+.+ +..+.+ ++.+++.+++|+|+++++++ .+++ ..||+|||+.|++..|
T Consensus 44 ~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q 123 (364)
T 3qel_B 44 NETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQ 123 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHH
Confidence 89999999999999999889999986544 445667 99999999999999999998 8997 6799999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcc-cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHH-HHHhcCCccEEEEEe
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYG-AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKEL-SKLSTMQTRVFIVHM 160 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l-~~l~~~~~~vIi~~~ 160 (753)
+.++++++++|||+||++|++|+ .| ..+.+.+++.++..++|+.....++...+..+++..+ +++++++++||+++|
T Consensus 124 ~~ai~~ll~~fgW~~V~iI~~d~-~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~ 202 (364)
T 3qel_B 124 ASVMLNIMEEYDWYIFSIVTTYF-PGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYC 202 (364)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESC-TTHHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEES
T ss_pred HHHHHHHHHHCCCeEEEEEEeCC-ccHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEc
Confidence 99999999999999999999885 33 2233333333334445777666554433455788888 689999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSS 240 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~ 240 (753)
+.+++..++++|.++||..++++||+++.+....+... .+...|++++.... |+
T Consensus 203 ~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~~~~~---~~~~~g~~~~~~~~------------W~----------- 256 (364)
T 3qel_B 203 TKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVP---SEFPTGLISVSYDE------------WD----------- 256 (364)
T ss_dssp CHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCSTTCCC---TTSCTTCEECCBCT------------TT-----------
T ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEEecccccCccccc---ccCCCceEEEeecc------------ch-----------
Confidence 99999999999999999988899999988643332221 13456777765422 21
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCc--cccchHHHHHHHHhcccccceeeEEe-e
Q 037761 241 VTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLG--FSRIGHILCNQILNTQFKGLSGEFHL-V 317 (753)
Q Consensus 241 ~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~f~g~~G~v~f-~ 317 (753)
..+.+++||||+++|+|++++.... ...+.. ..+|.... .|.+|..|.++|++++|+|. ++.| +
T Consensus 257 ----~~~~~~~yDaV~~~A~A~~~~~~~~-~~i~~~------~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~ 323 (364)
T 3qel_B 257 ----YGLPARVRDGIAIITTAASDMLSEH-SFIPEP------KSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSE 323 (364)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHTTT-SCCCCC------CSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCT
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhcc-CCCCCC------CCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECC
Confidence 1246789999999999999984421 111111 33444433 46789999999999999998 8899 8
Q ss_pred CCccceeEEEEEEEe-ccc-eEEEEeecCCCcccccccCccCCCCceecCC
Q 037761 318 NGQLESSVFEIVNVI-GTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPG 366 (753)
Q Consensus 318 ~g~~~~~~y~i~~~~-~~~-~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~ 366 (753)
+|++.++.|+|+|++ +++ ++||+|+.. ++ +.+.+.||.
T Consensus 324 ~G~~~~~~~~Iinl~~~~~~~~VG~W~~~-~L----------~~~~~~Wp~ 363 (364)
T 3qel_B 324 DGYQMHPKLVIILLNKERKWERVGKWKDK-SL----------QMKYYVWPR 363 (364)
T ss_dssp TSSBSSCCEEEEEECTTSCEEEEEEECSS-CE----------EESCSSCCC
T ss_pred CCCcccceEEEEEEcCCCCcEEEEEECCC-eE----------EeCcCCCCC
Confidence 999988899999999 566 999999832 33 246788985
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.6e-32 Score=293.85 Aligned_cols=296 Identities=13% Similarity=0.142 Sum_probs=248.6
Q ss_pred ceeec-CCC-ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcH
Q 037761 3 KLLLL-KQF-KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDS 80 (753)
Q Consensus 3 ~l~~~-d~~-~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~ 80 (753)
+|+.. |++ +|.+|+.++++|+.+++|.+||||.+|+++.+++++++.+++|+|+++++++.+++. .||+||+.|++.
T Consensus 46 elv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~ 124 (371)
T 4f06_A 46 EFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMF 124 (371)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchh
Confidence 45555 565 899999999999999999999999999999999999999999999999998888754 489999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
.++.+++++++..+|+++++|+.|++||....+.+++.+++.|++++..+.++.+ ++|+++++.+|++++||+|+++.
T Consensus 125 ~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~pd~v~~~~ 202 (371)
T 4f06_A 125 QNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLS--TTDFGPIMQRIKNSGADMIFTFL 202 (371)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHTCSEEEEEC
T ss_pred hhhhhhhhhhhhcCceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcc--cccHHHHHHHHHhcCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999998865 67999999999999999998876
Q ss_pred C-hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC--CChhhhHHHHHHHHhhCCCCC
Q 037761 161 N-TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP--KSKELGLFDRRWKSKLHSMKP 237 (753)
Q Consensus 161 ~-~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~~F~~~~~~~~~~~~~ 237 (753)
. ++++..+++++++.|+......++.++....... .....+...|++....+.+ +.|..++|.++|+++++...
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~- 279 (371)
T 4f06_A 203 PAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTEPD--LPNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLD- 279 (371)
T ss_dssp CTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCGGG--HHHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGG-
T ss_pred ccCchhhHHHHHHHHhhhhccCcEEEEecccCCHHH--HHhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCC-
Confidence 5 5778889999999998766666665544332111 1234456778877765543 46889999999999987521
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-
Q 037761 238 NSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL- 316 (753)
Q Consensus 238 ~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f- 316 (753)
.++.++..+|||++++++|+++. . ...++++|+++|++++|+|++|.++|
T Consensus 280 -----~~~~~a~~~Yda~~~l~~Ai~~~-a-----------------------g~~d~~~v~~al~~~~~~~~~G~i~fd 330 (371)
T 4f06_A 280 -----EVTMTSVAAYDGARLIYKMIEAT-S-----------------------GKSDPDKAIAAVKGMKWVSPRGEVSID 330 (371)
T ss_dssp -----GCCHHHHHHHHHHHHHHHHHHHT-T-----------------------TSCCHHHHHHHHTTCEEEETTEEEEEC
T ss_pred -----CccchHHHHHHHHHHHHHHHHHh-c-----------------------CCCCHHHHHHHHhCCCeeCCcEEEEEc
Confidence 57889999999999999999975 1 11456899999999999999999999
Q ss_pred eCCccceeEEEEEEEec
Q 037761 317 VNGQLESSVFEIVNVIG 333 (753)
Q Consensus 317 ~~g~~~~~~y~i~~~~~ 333 (753)
++|+.....+.|.++++
T Consensus 331 ~~~~~~~~~~~i~~v~~ 347 (371)
T 4f06_A 331 PETRHITQNVYLREVEK 347 (371)
T ss_dssp TTTCBEEEEEEEEEEEE
T ss_pred CCCCcccCCEEEEEEEe
Confidence 66655456777888873
No 18
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=4.8e-32 Score=290.90 Aligned_cols=292 Identities=11% Similarity=0.096 Sum_probs=251.5
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDSL 81 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~~ 81 (753)
|+.. ++++|.+++..+++|+.+++|.+||||.+|..+.++.+++..+++|+|+++++++.+++ ..+|++||+.|++..
T Consensus 47 l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~ 126 (375)
T 3i09_A 47 VVYADHQNKADIAASKAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMA 126 (375)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHH
Confidence 4444 78999999999999999889999999999999999999999999999999988888886 578999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 82 QVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 82 ~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
++.++++++.++||++|++|+.|++||....+.+++.+++.|++++..+.++.+ ..|+...+.++++.++|+|+++++
T Consensus 127 ~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~ 204 (375)
T 3i09_A 127 LAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLS--ASDFSSFLLQAQSSKAQILGLANA 204 (375)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCC--CccHHHHHHHHHhCCCCEEEEecC
Confidence 999999999889999999999999999999999999999999999988887754 568999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCC-ChhhhHHHHHHHHhhCCCCCCCC
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPK-SKELGLFDRRWKSKLHSMKPNSS 240 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~ 240 (753)
..++..+++++++.|+..+. .+++.+.+.... .....+..+|++....+.+. .|..++|.++|+++|+.
T Consensus 205 ~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~------ 274 (375)
T 3i09_A 205 GGDTVNAIKAAKEFGITKTM-KLAALLMFINDV---HALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKK------ 274 (375)
T ss_dssp HHHHHHHHHHHHHTTGGGTC-EEEESSCCHHHH---HHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS------
T ss_pred chhHHHHHHHHHHcCCCcCc-eEEecccchhhH---hhhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCC------
Confidence 99999999999999987655 444444333211 11122457788776655443 58899999999999987
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-eCC
Q 037761 241 VTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNG 319 (753)
Q Consensus 241 ~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g 319 (753)
.|+.+++.+|||++++++|++++ +. .++.+|.++|++++|+|++|.+.| +||
T Consensus 275 --~p~~~a~~~Yda~~~~~~Al~~a-g~------------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g 327 (375)
T 3i09_A 275 --MPSSLQAADYSSVTTYLKAVQAA-GS------------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDG 327 (375)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHH-TS------------------------CCHHHHHHHHTTSCEESSSCEEEECTTS
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHhCCCccCCCCceEECCCC
Confidence 78899999999999999999998 31 356899999999999999999999 899
Q ss_pred ccceeEEEEEEEeccc
Q 037761 320 QLESSVFEIVNVIGTG 335 (753)
Q Consensus 320 ~~~~~~y~i~~~~~~~ 335 (753)
++. ..+.|+++++++
T Consensus 328 ~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 328 SMI-HDMYLMEVKKPS 342 (375)
T ss_dssp BEE-CCEEEEEECCGG
T ss_pred Cee-eeeEEEEEeccc
Confidence 984 567788888644
No 19
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=6e-32 Score=289.22 Aligned_cols=300 Identities=19% Similarity=0.235 Sum_probs=258.0
Q ss_pred ceeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHH
Q 037761 3 KLLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSL 81 (753)
Q Consensus 3 ~l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~ 81 (753)
+|+.. ++++|..++..+++|+.+++|.+||||.+|..+.++++++..+++|+|+++++++.+++ .+|++||+.|++..
T Consensus 56 ~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~ 134 (366)
T 3td9_A 56 ELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPF 134 (366)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHH
Confidence 34444 78999999999999999988999999999999999999999999999999988887765 56999999999999
Q ss_pred HHHHHHHHH-HHcCCeEEEEEEe-eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEE
Q 037761 82 QVKAISAVL-QNFSWHEVVLMYE-DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVH 159 (753)
Q Consensus 82 ~~~a~~~~l-~~~~w~~vail~~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~ 159 (753)
++.++++++ +++||+++++|+. +++||....+.+++.+++.|++++... ++.+ ..|+...++++++.++|+|+++
T Consensus 135 ~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~ 211 (366)
T 3td9_A 135 QGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYIT 211 (366)
T ss_dssp HHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEc
Confidence 999999998 6689999999986 678999999999999999999999887 7654 6689999999999999999999
Q ss_pred eChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCC---ChhhhHHHHHHHHhhCCCC
Q 037761 160 MNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPK---SKELGLFDRRWKSKLHSMK 236 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~---~~~~~~F~~~~~~~~~~~~ 236 (753)
++..++..+++++++.|+. ..|++++.+... .+.....+..+|++....+.+. .|..++|.++|+++|+.
T Consensus 212 ~~~~~a~~~~~~~~~~g~~---~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-- 284 (366)
T 3td9_A 212 GYYPEIALISRQARQLGFT---GYILAGDGADAP--ELIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK-- 284 (366)
T ss_dssp SCHHHHHHHHHHHHHTTCC---SEEEECGGGCST--HHHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS--
T ss_pred cchhHHHHHHHHHHHcCCC---ceEEeeCCcCCH--HHHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC--
Confidence 9999999999999999974 357776665431 1112344577888887765544 67899999999999997
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcc-cccceeeEE
Q 037761 237 PNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQ-FKGLSGEFH 315 (753)
Q Consensus 237 ~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-f~g~~G~v~ 315 (753)
.|+.+++.+|||++++++|++++ +. .++++|.++|++++ |+|++|.+.
T Consensus 285 ------~p~~~~~~~yda~~~~~~al~~a-g~------------------------~~~~~~~~~l~~~~~~~g~~G~i~ 333 (366)
T 3td9_A 285 ------EPAALNALGYDAYMVLLDAIERA-GS------------------------FDREKIAEEIRKTRNFNGASGIIN 333 (366)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHH-TS------------------------CCHHHHHHHHTTCCSEEETTEEEC
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHHhCCCCcccceeeE
Confidence 78899999999999999999998 22 45689999999998 999999999
Q ss_pred e-eCCccceeEEEEEEEeccc-eEEEEeecCC
Q 037761 316 L-VNGQLESSVFEIVNVIGTG-RVVGYWTSEK 345 (753)
Q Consensus 316 f-~~g~~~~~~y~i~~~~~~~-~~vg~~~~~~ 345 (753)
| ++|++. ..+.|+++++++ +.++.|++..
T Consensus 334 f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 334 IDENGDAI-KSVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp BCTTSCBC-CCEEEEEEETTEEEEEEEECGGG
T ss_pred ECCCCCcc-CceEEEEEECCEEEEEEecChhh
Confidence 9 899985 458999999777 9999997654
No 20
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=9.1e-32 Score=293.23 Aligned_cols=299 Identities=12% Similarity=0.063 Sum_probs=244.1
Q ss_pred ceeecC-C-CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCC-----C-CCCCceEE
Q 037761 3 KLLLLK-Q-FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS-----P-TEHPFFIR 74 (753)
Q Consensus 3 ~l~~~d-~-~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~-----~-~~~~~~fr 74 (753)
+|+..| + ++|..|+.++++|+.+++|.+||||.+|..+.+++++++.+++|+|++++ ++.++ + ..|+++||
T Consensus 57 ~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~ 135 (419)
T 3h5l_A 57 ELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQ 135 (419)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEE
T ss_pred EEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEE
Confidence 455555 6 69999999999999988999999999999999999999999999999754 33221 2 47899999
Q ss_pred EecCcHHHHHHHHHHHHHc--------CCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHH
Q 037761 75 VTQNDSLQVKAISAVLQNF--------SWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELS 146 (753)
Q Consensus 75 ~~p~~~~~~~a~~~~l~~~--------~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~ 146 (753)
+.|++..++.++++++.++ +|++|++|+.|++||....+.+++.+++.|++++..+.++.+ +.|++.+++
T Consensus 136 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~l~ 213 (419)
T 3h5l_A 136 YDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP--VSDWGPTLA 213 (419)
T ss_dssp SSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS--CSCCHHHHH
T ss_pred eCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC--CccHHHHHH
Confidence 9999999999999999875 899999999999999999999999999999999999888754 679999999
Q ss_pred HHhcCCccEEEEEeC-hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEe-CCCChhhhHH
Q 037761 147 KLSTMQTRVFIVHMN-TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSH-LPKSKELGLF 224 (753)
Q Consensus 147 ~l~~~~~~vIi~~~~-~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~~~~~~F 224 (753)
+|++.++|+|++++. +.++..+++++++.|+ ...|++++++.... +.....+..+|++....+ ....+..++|
T Consensus 214 ~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~--~~~~~g~~~~G~~~~~~~~~~~~~~~~~f 288 (419)
T 3h5l_A 214 KLRADPPAVIVVTHFYPQDQALFMNQFMTDPT---NSLVYLQYGASLAA--FRDIAGDNSVGVTYATVLGTLQDEMGDAF 288 (419)
T ss_dssp HHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC---SCEEEECSGGGSHH--HHHHHGGGGTTCEEEESSCCCSSHHHHHH
T ss_pred HHHhcCCCEEEEccccCchHHHHHHHHHHcCC---CceEEecCCCCcHH--HHHhhhhhcCceEEeecCCCCCCHHHHHH
Confidence 999999999999876 5789999999999997 34677776664321 112344567888765443 3456889999
Q ss_pred HHHHHHhhCCCCCCCCccccc-hhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHH
Q 037761 225 DRRWKSKLHSMKPNSSVTEIN-ISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQIL 303 (753)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 303 (753)
.++|+++|+. .+. .+++.+|||++++++|++++ +... ..+...++.+|.++|+
T Consensus 289 ~~~~~~~~g~--------~p~~~~a~~~Yda~~~~~~a~~~a-~~~~-----------------~~g~~~~~~~l~~al~ 342 (419)
T 3h5l_A 289 AKAYKERYGD--------LSSTASGCQTYSALYAYSIAAALA-GGPG-----------------APYDDVQNKAVADRLR 342 (419)
T ss_dssp HHHHHHHHCT--------TSCHHHHHHHHHHHHHHHHHHHHT-TSCC-----------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--------CCCcchhHHHHHHHHHHHHHHHHh-cCCc-----------------cCCCccCHHHHHHHHH
Confidence 9999999997 454 68999999999999999998 3210 0012356789999999
Q ss_pred hcccccceeeEEe-eCCccc------------eeEEEEEEEeccc
Q 037761 304 NTQFKGLSGEFHL-VNGQLE------------SSVFEIVNVIGTG 335 (753)
Q Consensus 304 ~~~f~g~~G~v~f-~~g~~~------------~~~y~i~~~~~~~ 335 (753)
+++|+|++|.+.| ++|+.. ...+.|+||++++
T Consensus 343 ~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~g~ 387 (419)
T 3h5l_A 343 SLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDKA 387 (419)
T ss_dssp HCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCTT
T ss_pred hCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeCCc
Confidence 9999999999999 888852 1235677887644
No 21
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=9e-32 Score=289.20 Aligned_cols=294 Identities=16% Similarity=0.101 Sum_probs=251.2
Q ss_pred ceeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcH
Q 037761 3 KLLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDS 80 (753)
Q Consensus 3 ~l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~ 80 (753)
+|+.. ++++|.+++.++++|+.+++|++||||.+|+.+.++++++..+++|+|+++++++.+++ ..+|++||+.|++.
T Consensus 48 ~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~ 127 (379)
T 3n0w_A 48 KLVSADYQMKTDVALSIAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFT 127 (379)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChH
Confidence 34444 78999999999999999889999999999999999999999999999999998888886 56899999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
.++.++++++.++||++|++|+.|++||....+.+++.+++.|++++..+.++.+ ..|+.+.+.++++.++|+|++++
T Consensus 128 ~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~ 205 (379)
T 3n0w_A 128 SIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFE--TQDFSSYLLQAKASGAQLIVSTS 205 (379)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTT--CCCCHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCC--CCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999889999999999999999999999999999999999988888754 56899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCC-ChhhhHHHHHHHHhhCCCCCCC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPK-SKELGLFDRRWKSKLHSMKPNS 239 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~ 239 (753)
++.++..++++++++|+..+. .++.+..+.... +.....+..+|++....+.++ .|..++|.++|+++|+.
T Consensus 206 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~----- 277 (379)
T 3n0w_A 206 GGAANINIMKQAREFGLPSKT-QKVGGMIDILTD--VKSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGK----- 277 (379)
T ss_dssp CHHHHHHHHHHHHHTTCSCSS-CEEECCBCCHHH--HHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS-----
T ss_pred ccchHHHHHHHHHHcCCCCCC-cEEEecccchHH--HHhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCC-----
Confidence 999999999999999986543 345544433211 111122567888776655443 58899999999999987
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceee-EEe-e
Q 037761 240 SVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGE-FHL-V 317 (753)
Q Consensus 240 ~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~-v~f-~ 317 (753)
.|+.+++.+|||++++++|++++ +. .++.+|.++|++++|+|+.|. +.| +
T Consensus 278 ---~p~~~~~~~Yda~~~~~~Al~~a-g~------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~ 329 (379)
T 3n0w_A 278 ---MPTNNQAGGYSAALQYLKAVNAI-GS------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRP 329 (379)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHH-TC------------------------CCHHHHHHHHTTCCBCSSSCCSBEECT
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHhcCCccccCCCceeECC
Confidence 78899999999999999999999 32 356899999999999998876 899 8
Q ss_pred CCccceeEEEEEEEeccc
Q 037761 318 NGQLESSVFEIVNVIGTG 335 (753)
Q Consensus 318 ~g~~~~~~y~i~~~~~~~ 335 (753)
||++ ...+.|+++++++
T Consensus 330 ~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 330 GGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp TSBE-ECCEEEEEECCGG
T ss_pred CCCc-ccceEEEEEEchh
Confidence 9998 4678898988644
No 22
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=5.8e-32 Score=291.56 Aligned_cols=304 Identities=13% Similarity=0.148 Sum_probs=252.4
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDSL 81 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~~ 81 (753)
|+.. ++++|.+++..+++|+.+++|.+||||.+|..+.++++++..+++|+|+++++++.++. ..+|++||+.|++..
T Consensus 49 l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~ 128 (387)
T 3i45_A 49 VISRDDGGDPGKAVTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYM 128 (387)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHH
Confidence 3444 78999999999999999889999999999999999999999999999999988888874 678999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEE
Q 037761 82 QVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVH 159 (753)
Q Consensus 82 ~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~ 159 (753)
++.++++++.++||++|++|+.|++||....+.+++.+++. |++++..+.++.+ ..|+...++++++.++|+|+++
T Consensus 129 ~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~v~~~ 206 (387)
T 3i45_A 129 QAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALY--KLDAGPTVQALQQAEPEGLFNV 206 (387)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTT--CCCHHHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCC--CcCHHHHHHHHHhCCCCEEEEc
Confidence 99999999999999999999999999999999999999998 8999888877654 5699999999999999999999
Q ss_pred eChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEE-e-CCCChhhhHHHHHHHHhhCCCCC
Q 037761 160 MNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRS-H-LPKSKELGLFDRRWKSKLHSMKP 237 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~-~-~~~~~~~~~F~~~~~~~~~~~~~ 237 (753)
+...++..+++++++.|+.. + +++.+..+... ........+..+|++.... + ..+.|..++|.++|+++|+.
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~-~-~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--- 280 (387)
T 3i45_A 207 LFGADLPKFVREGRVRGLFA-G-RQVVSMLTGEP-EYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKE--- 280 (387)
T ss_dssp CCTTHHHHHHHHHHHHTSST-T-CEEEEEEEESH-HHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSS---
T ss_pred CccHHHHHHHHHHHHcCCCC-C-CeEEeecCCCh-HHHHHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHCC---
Confidence 99999999999999999843 2 44444332211 1111111234678776533 2 24678999999999999987
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-
Q 037761 238 NSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL- 316 (753)
Q Consensus 238 ~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f- 316 (753)
.|+.+++.+|||++++++|++++ +. .++.+|.++|++++|+|++|.+.|
T Consensus 281 -----~p~~~~~~~Yda~~~~a~Al~~a-g~------------------------~~~~~v~~al~~~~~~g~~G~i~f~ 330 (387)
T 3i45_A 281 -----DPFVGSLVGYNTLTAMAVAFEKA-GG------------------------TESETLVETLKDMAFSTPMGPLSFR 330 (387)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHH-TS------------------------CCHHHHHHHTTTCEEEETTEEEEBC
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHhcCCCcCCCCCeEEc
Confidence 77889999999999999999998 31 356899999999999999999999
Q ss_pred e-CCccceeEEEEEEEe-ccc-eEEEEeecCCC
Q 037761 317 V-NGQLESSVFEIVNVI-GTG-RVVGYWTSEKG 346 (753)
Q Consensus 317 ~-~g~~~~~~y~i~~~~-~~~-~~vg~~~~~~~ 346 (753)
+ +++. .....|.+++ +++ .+++.|....+
T Consensus 331 ~~~~~~-~~~~~i~~~~~~~g~~~i~~w~~~~~ 362 (387)
T 3i45_A 331 ASDHQS-TMGAWVGRTALRDGKGVMVDWRYVDG 362 (387)
T ss_dssp TTTCBB-CCCEEEEEEEEETTEEEEEEEEEECG
T ss_pred CCCCcc-ccceeEEEEEeeCCceeEEeeEEeCc
Confidence 5 5555 4556666665 445 88899976554
No 23
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.98 E-value=3.6e-31 Score=283.44 Aligned_cols=304 Identities=16% Similarity=0.168 Sum_probs=255.2
Q ss_pred ceeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHH
Q 037761 3 KLLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSL 81 (753)
Q Consensus 3 ~l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~ 81 (753)
+|+.. ++++|.+++..+++|+.+++|.+||||.+|..+.++.+++..+++|+|+++++++.+++. +|++||+.|++..
T Consensus 47 ~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~ 125 (368)
T 4eyg_A 47 EVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQ 125 (368)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHH
Confidence 34444 789999999999999998899999999999999999999999999999998888877755 7999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 82 QVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 82 ~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
++.++++++.++||+++++|+.++.+|....+.+++.+++.|++++..+.++.+ ..|+...++++++.++|+|++++.
T Consensus 126 ~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~ 203 (368)
T 4eyg_A 126 SSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLA--NPDFAPFLQRMKDAKPDAMFVFVP 203 (368)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSS--SCCCHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCC--CCcHHHHHHHHHhcCCCEEEEecc
Confidence 999999999999999999999999999999999999999999999988877654 568999999999999999999888
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC--CChhhhHHHHHHHHhh-CCCCCC
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP--KSKELGLFDRRWKSKL-HSMKPN 238 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~~F~~~~~~~~-~~~~~~ 238 (753)
..++..+++++++.|+..++..|++++.+...... ....+..+|++....+.+ ..|..++|.++| ++| +.
T Consensus 204 ~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~---- 276 (368)
T 4eyg_A 204 AGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDDLL--NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQ---- 276 (368)
T ss_dssp TTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHHHH--TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSS----
T ss_pred chHHHHHHHHHHHcCCCcCCceEEecCcccCHHHH--HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCC----
Confidence 88999999999999986554678877643321111 112345678887765543 458899999999 888 54
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe--
Q 037761 239 SSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-- 316 (753)
Q Consensus 239 ~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-- 316 (753)
.|+.+++.+|||++++++|++++ +. ..++++|.++|++++|+|++|.+.|
T Consensus 277 ----~p~~~~~~~yda~~~~~~al~~~-g~-----------------------~~~~~~l~~al~~~~~~g~~G~i~f~~ 328 (368)
T 4eyg_A 277 ----RPGFMAVGGYDGIHLVFEALKKT-GG-----------------------KADGDSLIAAMKGMKWESPRGPISIDP 328 (368)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHT-TT-----------------------CCSHHHHHHHHTTCEEEETTEEEEECT
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHh-CC-----------------------CCCHHHHHHHHHcCCcccCCCCeEECc
Confidence 67889999999999999999998 21 1356899999999999999999999
Q ss_pred eCCccceeEEEEEEEe--ccc---eEEEEeecCC
Q 037761 317 VNGQLESSVFEIVNVI--GTG---RVVGYWTSEK 345 (753)
Q Consensus 317 ~~g~~~~~~y~i~~~~--~~~---~~vg~~~~~~ 345 (753)
++|+. ...+.|++++ ++. +.++.|+...
T Consensus 329 ~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~~~~~ 361 (368)
T 4eyg_A 329 ETRDI-VQNIYIRKVEKVDGELYNIEFAKFDAVK 361 (368)
T ss_dssp TTCCE-EEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccCCc-ccceEEEEEEecCCeEEEEEeecccccc
Confidence 36766 5677898988 444 6677776544
No 24
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.97 E-value=1.3e-30 Score=279.74 Aligned_cols=299 Identities=11% Similarity=0.118 Sum_probs=256.6
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDSL 81 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~~ 81 (753)
|+.. +++++.++...+++|+++++|.+||||.+|..+.++.+++..+++|+|+++++++.+++ ..+|++||+.|++..
T Consensus 58 l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (375)
T 4evq_A 58 FVKVDDESAPPKATELTTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQ 137 (375)
T ss_dssp EEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHh
Confidence 4444 78999999999999999889999999999999999999999999999999988888876 458999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 82 QVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 82 ~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
++.++++++.+.||++|++|+.++.+|....+.+++.+++.|++++..+.++.+ ..|+...++++++.++|+|+++++
T Consensus 138 ~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dai~~~~~ 215 (375)
T 4evq_A 138 IGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP--DVEFQSALAEIASLKPDCVYAFFS 215 (375)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEecC
Confidence 999999999989999999999999999999999999999999999888777654 568899999999989999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC--CChhhhHHHHHHHHhhCCCCCCC
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP--KSKELGLFDRRWKSKLHSMKPNS 239 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~ 239 (753)
..++..+++++++.|+.. .|++++ +.. ..+.....+..+|++....+.+ ..|..++|.++|+++|+.
T Consensus 216 ~~~a~~~~~~~~~~g~~v---p~~~~~-~~~--~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----- 284 (375)
T 4evq_A 216 GGGALKFIKDYAAANLGI---PLWGPG-FLT--DGVEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKI----- 284 (375)
T ss_dssp THHHHHHHHHHHHTTCCC---CEEEEG-GGT--TTTHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS-----
T ss_pred cchHHHHHHHHHHcCCCc---eEEecC-cCC--HHHHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCC-----
Confidence 999999999999999752 345543 321 1122334567889888766554 358899999999999987
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-eC
Q 037761 240 SVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-VN 318 (753)
Q Consensus 240 ~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~ 318 (753)
.|+.+++.+|||++++++|++++ +. .+.++++|.++|++++|+|++|.+.| ++
T Consensus 285 ---~p~~~~~~~yda~~~~~~al~~~-g~----------------------~~~~~~~l~~~l~~~~~~g~~G~i~f~~~ 338 (375)
T 4evq_A 285 ---PPDVFAVQGWDAGQLLDAGVKAV-GG----------------------DVAKRKELNAAMAAASFASPRGPFKLSAA 338 (375)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHT-TT----------------------CTTCHHHHHHHHHTCEEEETTEEEEBCTT
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHh-CC----------------------CCCCHHHHHHHHhcCCcccCCcceeECCC
Confidence 78899999999999999999998 32 12456899999999999999999999 89
Q ss_pred CccceeEEEEEEEeccc-eEEEEee
Q 037761 319 GQLESSVFEIVNVIGTG-RVVGYWT 342 (753)
Q Consensus 319 g~~~~~~y~i~~~~~~~-~~vg~~~ 342 (753)
|++ ...+.|+++++++ +.++.+-
T Consensus 339 g~~-~~~~~i~~~~~g~~~~v~~~~ 362 (375)
T 4evq_A 339 HNP-VQNFYLRELKGGKSVNLGLAA 362 (375)
T ss_dssp SCB-CCCEEEEEEETTEEEEEEEEE
T ss_pred CCc-cccEEEEEEECCCcEEeeehh
Confidence 998 5679999999877 7777763
No 25
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.97 E-value=1.8e-30 Score=276.85 Aligned_cols=298 Identities=12% Similarity=0.126 Sum_probs=252.0
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
|+.. ++++|..++..+++|+.+++|.+||||.+|..+.++.+++...++|+|+++++++.+++.. |++||+.|++..+
T Consensus 48 l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~ 126 (358)
T 3hut_A 48 ILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFE 126 (358)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGH
T ss_pred EEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHH
Confidence 4444 7899999999999999778999999999999999999999999999999988888887644 9999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
+.++++++...||++|++|+.++.+|....+.+++.+++.|++++....++.+ ..++...++++++.++|+|+++++.
T Consensus 127 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~ 204 (358)
T 3hut_A 127 GPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAY 204 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCc
Confidence 99999999878999999999999999999999999999999999887777644 5688999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC--CChhhhHHHHHHHHhhCCCCCCCC
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP--KSKELGLFDRRWKSKLHSMKPNSS 240 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~ 240 (753)
.++..+++++++.|+.. .|++++.+.... +.....+..+|++....+.+ ..|..++|.+.|+++|+.
T Consensus 205 ~~a~~~~~~~~~~g~~~---p~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------ 273 (358)
T 3hut_A 205 EDAAPFLRALRARGSAL---PVYGSSALYSPK--FIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA------ 273 (358)
T ss_dssp HHHHHHHHHHHHTTCCC---CEEECGGGCSHH--HHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS------
T ss_pred hHHHHHHHHHHHcCCCC---cEEecCcccCHH--HHHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC------
Confidence 89999999999999843 477766554321 11233456788888776554 468899999999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHH-HHHHHHhc-ccccceeeEEe-e
Q 037761 241 VTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHI-LCNQILNT-QFKGLSGEFHL-V 317 (753)
Q Consensus 241 ~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~-~f~g~~G~v~f-~ 317 (753)
.|+.+++.+|||++++++|++++ +. .++.+ |.++|+++ .|+|++|.+.| +
T Consensus 274 --~p~~~~~~~yda~~~~~~al~~a-g~------------------------~~~~~~~~~~l~~~~~~~g~~G~~~f~~ 326 (358)
T 3hut_A 274 --IPTLFAAHGYDAVGIMLAAVGRA-GP------------------------EVTRESLRDALAATDRYAGVTGITRFDP 326 (358)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHH-CT------------------------TCCHHHHHHHHHTCCSEEETTEEEEECT
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHh-CC------------------------CChHHHHHHHHHhcCCCcCCceeeEECC
Confidence 78899999999999999999998 32 23477 99999999 89999999999 8
Q ss_pred CCccceeEEEEEEEeccc-eEEEEee
Q 037761 318 NGQLESSVFEIVNVIGTG-RVVGYWT 342 (753)
Q Consensus 318 ~g~~~~~~y~i~~~~~~~-~~vg~~~ 342 (753)
+|++....+.|+++++++ +.+..++
T Consensus 327 ~g~~~~~~~~i~~~~~G~~~~~~~~~ 352 (358)
T 3hut_A 327 ETRETTKILTRLVVREGDFRVIDREG 352 (358)
T ss_dssp TTCCEEECCEEEEEETTEEEEC----
T ss_pred CCCcCCCceEEEEEECCEEEEecccc
Confidence 998856778999998755 5554443
No 26
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.97 E-value=5.8e-31 Score=280.40 Aligned_cols=298 Identities=14% Similarity=0.116 Sum_probs=252.6
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
|+.. ++++|.++...+++|++ ++|++||||.+|..+.++.+++..+++|+|++.++++.+++..+|++||+.|++..+
T Consensus 46 l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (356)
T 3ipc_A 46 IVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQ 124 (356)
T ss_dssp EEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHH
Confidence 4444 78999999999999999 699999999999999999999999999999999988888877789999999999999
Q ss_pred HHHHHHHH-HHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 83 VKAISAVL-QNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 83 ~~a~~~~l-~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
+.++++++ +++||++|++|+.++++|....+.+++.+++.|++++..+.++.+ ..|+...++++++.++|+|+++++
T Consensus 125 ~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~ 202 (356)
T 3ipc_A 125 GGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVG--DKDFSALISKMKEAGVSIIYWGGL 202 (356)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEccC
Confidence 99999976 567999999999999999999999999999999998877777644 568999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC-CChhhhHHHHHHHHhhCCCCCCCC
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP-KSKELGLFDRRWKSKLHSMKPNSS 240 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~ 240 (753)
..++..+++++++.|+.. .|++++++.... +.....+..+|++....+.+ ..|..++|.++|+++ +.
T Consensus 203 ~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~--~~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~------ 270 (356)
T 3ipc_A 203 HTEAGLIIRQAADQGLKA---KLVSGDGIVSNE--LASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-GF------ 270 (356)
T ss_dssp HHHHHHHHHHHHHHTCCC---EEEECGGGCSHH--HHHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-TC------
T ss_pred chHHHHHHHHHHHCCCCC---cEEEeccccCHH--HHHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-CC------
Confidence 999999999999999753 467766554311 11223456788877665443 458899999999998 66
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-eCC
Q 037761 241 VTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNG 319 (753)
Q Consensus 241 ~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g 319 (753)
.|+.+++.+|||++++++|++++ +. .++.+|.++|++.+|+|++|.+.| ++|
T Consensus 271 --~p~~~~~~~yda~~~~~~al~~a-g~------------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g 323 (356)
T 3ipc_A 271 --NPEAYTLYSYAAMQAIAGAAKAA-GS------------------------VEPEKVAEALKKGSFPTALGEISFDEKG 323 (356)
T ss_dssp --CCCTTHHHHHHHHHHHHHHHHHH-TC------------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTS
T ss_pred --CcchhHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHHhCCCCCcceeeEECCCC
Confidence 67789999999999999999998 22 356899999999999999999999 899
Q ss_pred ccceeEEEEEEEec---cc-eEEEEeec
Q 037761 320 QLESSVFEIVNVIG---TG-RVVGYWTS 343 (753)
Q Consensus 320 ~~~~~~y~i~~~~~---~~-~~vg~~~~ 343 (753)
++....|.|+++++ ++ +.+..|..
T Consensus 324 ~~~~~~~~i~~~~~~~~G~~~~~~~~~~ 351 (356)
T 3ipc_A 324 DPKLPGYVMYEWKKGPDGKFTYIQQGSH 351 (356)
T ss_dssp CBCCCCCEEEEEEECTTSSEEEEEC---
T ss_pred CccCCCeEEEEEEECCCCcEEEEecccc
Confidence 99767899999996 34 77766643
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.97 E-value=2.6e-30 Score=274.21 Aligned_cols=291 Identities=13% Similarity=0.156 Sum_probs=245.1
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
++.. ++++|..++..+++|+++ +|++||||.+|..+.++.+++..+++|+|+++++++.+++..+|++||+.|++..+
T Consensus 46 l~~~d~~~~~~~~~~~~~~l~~~-~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (346)
T 1usg_A 46 GVEYDDACDPKQAVAVANKIVND-GIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQ 124 (346)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHT-TCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhC-CCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHH
Confidence 4444 689999999999999975 99999999999889999999999999999998888777765589999999999999
Q ss_pred HHHHHHHH-HHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 83 VKAISAVL-QNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 83 ~~a~~~~l-~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
+.++++++ +++||++|++|+.++.+|....+.+++.+++.|++++..+.++.+ ..|+...++++++.++|+|++++.
T Consensus 125 ~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~ 202 (346)
T 1usg_A 125 GPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGY 202 (346)
T ss_dssp HHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCc
Confidence 99999998 557999999999998899999999999999999999877666543 457888999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeC-CCChhhhHHHHHHHHhhCCCCCCCC
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHL-PKSKELGLFDRRWKSKLHSMKPNSS 240 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~F~~~~~~~~~~~~~~~~ 240 (753)
..++..+++++++.|+.. .|++++.+... .+.....+..+|++....+. ...|..++|.++|+++++.
T Consensus 203 ~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~------ 271 (346)
T 1usg_A 203 YPEMGQMLRQARSVGLKT---QFMGPEGVGNA--SLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKD------ 271 (346)
T ss_dssp HHHHHHHHHHHHHTTCCC---EEEECGGGCCT--THHHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCC------
T ss_pred chHHHHHHHHHHHcCCCC---eEEecCCCCcH--HHHHHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCC------
Confidence 888999999999999843 38887765432 11122345678888776542 3457889999999999876
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-eCC
Q 037761 241 VTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNG 319 (753)
Q Consensus 241 ~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g 319 (753)
.++.+++.+|||++++++|++++ +. .++++|.++|++.+|+|++|.+.| ++|
T Consensus 272 --~~~~~~~~~yda~~~~~~al~~~-g~------------------------~~~~~l~~~l~~~~~~g~~G~i~f~~~g 324 (346)
T 1usg_A 272 --PSGPYVWITYAAVQSLATALERT-GS------------------------DEPLALVKDLKANGANTVIGPLNWDEKG 324 (346)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHH-CC------------------------CCHHHHHHHHHHHCEEETTEEECBCTTS
T ss_pred --CCchhHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHHhCCCccceeeeEECCCC
Confidence 67889999999999999999998 21 346899999999999999999999 899
Q ss_pred ccceeEEEEEEEe-ccc
Q 037761 320 QLESSVFEIVNVI-GTG 335 (753)
Q Consensus 320 ~~~~~~y~i~~~~-~~~ 335 (753)
++....|.|++++ ++.
T Consensus 325 ~~~~~~~~i~~~~~~G~ 341 (346)
T 1usg_A 325 DLKGFDFGVFQWHADGS 341 (346)
T ss_dssp SBSSCCCEEEEECTTSC
T ss_pred CccCCceEEEEEecCCE
Confidence 9866789999998 543
No 28
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.97 E-value=4.5e-30 Score=273.13 Aligned_cols=289 Identities=16% Similarity=0.212 Sum_probs=234.3
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
|+.. |+++|.+|+.++++|+.+++|.+++||.+|..+.+++++++.+++|+|+++++++.+++ .++|+||+.|++..+
T Consensus 51 lv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~ 129 (353)
T 4gnr_A 51 VVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQ 129 (353)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHhhCCceEEeccccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHH
Confidence 4444 88999999999999999999999999999999999999999999999999999988875 457999999999999
Q ss_pred HHHHHHHHHHc-CCeEEEEEEee-CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 83 VKAISAVLQNF-SWHEVVLMYED-TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 83 ~~a~~~~l~~~-~w~~vail~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
+.+++.++... +++++++++++ ++||.+..+.+.+ +.|++++..+.++.+ ++|+++++.++++++||+|++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~ 204 (353)
T 4gnr_A 130 GKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRE---SYKGEIVADETFVAG--DTDFQAALTKMKGKDFDAIVVPG 204 (353)
T ss_dssp HHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHHH---HCCSEEEEEEEECTT--CCCCHHHHHHHHTSCCSEEECCS
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHHH---HcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEec
Confidence 99999998654 55555555554 4588877776654 458899999988865 67999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC---CChhhhHHHHHHHHhhCCCCC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP---KSKELGLFDRRWKSKLHSMKP 237 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---~~~~~~~F~~~~~~~~~~~~~ 237 (753)
...++..++++++++|+.. .|+.++++... ........+..+|.+....+.+ ..+..++|.++|+++|+.
T Consensus 205 ~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--- 277 (353)
T 4gnr_A 205 YYNEAGKIVNQARGMGIDK---PIVGGDGFNGE-EFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNE--- 277 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCS---CEEECGGGCSH-HHHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSS---
T ss_pred CcHHHHHHHHHHHHcCCCC---cEEEecccccc-hhhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCC---
Confidence 9999999999999999854 34555544321 1111112345667776654433 357889999999999998
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhc-ccccceeeEEe
Q 037761 238 NSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNT-QFKGLSGEFHL 316 (753)
Q Consensus 238 ~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~g~~G~v~f 316 (753)
.|+.+++.+|||++++++|++++ .++.++.++|+++ +|+|++|+++|
T Consensus 278 -----~p~~~a~~~Yda~~~la~Ai~~a---------------------------~~~~~v~~aL~~~~~~~g~~G~i~f 325 (353)
T 4gnr_A 278 -----EPSTFAALAYDSVHLVANAAKGA---------------------------KNSGEIKDNLAXTKDFEGVTGQTSF 325 (353)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTTC---------------------------SSHHHHHHHHHTCCCEEETTEEECC
T ss_pred -----CCChhHHHHHHHHHHHHHHHhcC---------------------------CCHHHHHHHHHhcCCCccCceeEEE
Confidence 78899999999999999999865 1347899999988 59999999999
Q ss_pred -eCCccceeEEEEEEEeccc-eEE
Q 037761 317 -VNGQLESSVFEIVNVIGTG-RVV 338 (753)
Q Consensus 317 -~~g~~~~~~y~i~~~~~~~-~~v 338 (753)
+||++. ..+.|+++++++ +.+
T Consensus 326 ~~~g~~~-~~~~i~~v~~Gk~~~~ 348 (353)
T 4gnr_A 326 DADHNTV-KTAYMMTMNNGKVEAA 348 (353)
T ss_dssp CTTSCCC-CCEEEEEEETTEEEEE
T ss_pred CCCcCCc-CCeEEEEEECCEEEEE
Confidence 899984 456788998765 443
No 29
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.97 E-value=1.9e-30 Score=278.20 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=233.6
Q ss_pred ceeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcH
Q 037761 3 KLLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDS 80 (753)
Q Consensus 3 ~l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~ 80 (753)
+|+.. |+++|.+|+.++++|+.+++|.+||||.+|+.+.+++++++.+++|+|++.++++.+++ ..+||+||+.|++.
T Consensus 48 ~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~ 127 (374)
T 3n0x_A 48 VVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSS 127 (374)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCch
Confidence 34444 78999999999999999889999999999999999999999999999998888888886 46899999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCC-----ccE
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQ-----TRV 155 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-----~~v 155 (753)
.++.+++.++++++| ++++|+.|++||....+.+++.+++.|++++..+.++.+ .+|+++++++|++++ +|+
T Consensus 128 ~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~--~~d~~~~l~~i~~~~~~~~~~d~ 204 (374)
T 3n0x_A 128 QDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDKPGKKI 204 (374)
T ss_dssp HHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTT--CCCCHHHHHHHHHHHTTCSSEEE
T ss_pred hHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCC--CccHHHHHHHHHhcCCCCCCCCE
Confidence 999999988888887 899999999999999999999999999999999888754 679999999999988 999
Q ss_pred EEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeC---CCChhhhHHHHHHHHhh
Q 037761 156 FIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHL---PKSKELGLFDRRWKSKL 232 (753)
Q Consensus 156 Ii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---~~~~~~~~F~~~~~~~~ 232 (753)
|+++..+... .+.++.+.++...+..++..+....... ......|..+...+. ++.|..++|.++|+++|
T Consensus 205 v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~ 277 (374)
T 3n0x_A 205 IWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGNILPALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF 277 (374)
T ss_dssp EEECCCSSSC--HHHHHHHTCGGGGTEEEEECCCCTTGGG-----GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH
T ss_pred EEEEecCCcH--HHHHHHHcchhhcCCeeeeccccchhhh-----hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH
Confidence 9987443211 2344555555434444444433221111 113455666655432 34688899999999999
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhccccccee
Q 037761 233 HSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSG 312 (753)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G 312 (753)
+. .|+.+++.+|||++++++|++++ +. .++.+|.++|++++|+|++|
T Consensus 278 g~--------~p~~~a~~~Yda~~~l~~Al~~a-g~------------------------~~~~~v~~aL~~~~~~g~~G 324 (374)
T 3n0x_A 278 NA--------PPDFFTAGGFSAAMAVVTAVQKA-KS------------------------TDTEKLIAAMEGMEFDTPKG 324 (374)
T ss_dssp SS--------CCCHHHHHHHHHHHHHHHHHHHH-TS------------------------CCHHHHHHHHTTCEEEETTE
T ss_pred CC--------CCChhHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHhcCCccCCCC
Confidence 97 78899999999999999999998 31 45689999999999999999
Q ss_pred eEEe-e-CCccceeEEEEEEEeccc
Q 037761 313 EFHL-V-NGQLESSVFEIVNVIGTG 335 (753)
Q Consensus 313 ~v~f-~-~g~~~~~~y~i~~~~~~~ 335 (753)
.+.| + +|+. ...+.|++++.++
T Consensus 325 ~i~f~~~~~~~-~~~~~i~~~~~~~ 348 (374)
T 3n0x_A 325 KMVFRKEDHQA-LQSMYHFKVKVDP 348 (374)
T ss_dssp EEEECTTTCBE-ECCEEEEEEECCT
T ss_pred CEEECcccCcc-ccceEEEEEEeCC
Confidence 9999 4 5555 5678888888644
No 30
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.97 E-value=1.8e-29 Score=269.69 Aligned_cols=293 Identities=11% Similarity=0.137 Sum_probs=246.0
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHH--hhccCCccEEeecCCCCCCCCCCCCceEEEecCcH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVE--LGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDS 80 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~--i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~ 80 (753)
|+.. ++++|..++..+++|+.+++|.+||||.+|..+.++.+ ++..+++|+|+++++++.+++ +|++||+.|++.
T Consensus 49 l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~ 126 (364)
T 3lop_A 49 LVARDDEQKIEQTVRNVRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQ 126 (364)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChH
Confidence 4444 78999999999999999889999999999999999999 999999999999888877776 799999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
.++.++++++.++||++|++|+.+++||....+.+++.+++.|++++..+.++.+ ..|+...++++++.++|+|++++
T Consensus 127 ~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~ 204 (364)
T 3lop_A 127 QEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQAIFLGA 204 (364)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999998877777644 56899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHH-hhcccEEEEEEe----CCCChhhhHHHHHHHHhhCCC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVI-DSMEGVLGVRSH----LPKSKELGLFDRRWKSKLHSM 235 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~-~~~~g~i~~~~~----~~~~~~~~~F~~~~~~~~~~~ 235 (753)
+..++..+++++++.|+.. .|++.+.+.... . ..... +..+|++..... ....|..++|.++|+++++..
T Consensus 205 ~~~~a~~~~~~~~~~g~~~---~~i~~~~~~~~~-~-~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 279 (364)
T 3lop_A 205 TAEPAAQFVRQYRARGGEA---QLLGLSSIDPGI-L-QKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKD 279 (364)
T ss_dssp CHHHHHHHHHHHHHTTCCC---EEEECTTSCHHH-H-HHHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTT
T ss_pred CcHHHHHHHHHHHHcCCCC---eEEEeccCChHH-H-HHHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999854 366666554321 1 12233 567888776532 245688999999999998752
Q ss_pred CCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhc-cccc-ceee
Q 037761 236 KPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNT-QFKG-LSGE 313 (753)
Q Consensus 236 ~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~g-~~G~ 313 (753)
. .|+.++..+|||++++++|++++ +. ..++++|.++|+++ .|+| .+|.
T Consensus 280 ~------~p~~~a~~~yda~~~~~~al~~a-g~-----------------------~~~~~~v~~aL~~~~~~~~~~~g~ 329 (364)
T 3lop_A 280 V------DLSFRAVEGFVAAKVLAEAIRRA-GP-----------------------KPTREQVRHALTELRDYDVGGGFT 329 (364)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHH-CS-----------------------SCCHHHHHHHHHTCEEEESSTTCE
T ss_pred C------CCChHHHHHHHHHHHHHHHHHHh-CC-----------------------CCCHHHHHHHHHhcCCccCCCCee
Confidence 1 46788999999999999999998 31 14568999999999 6999 9999
Q ss_pred EEe-eCCccceeEEEEEEEeccc
Q 037761 314 FHL-VNGQLESSVFEIVNVIGTG 335 (753)
Q Consensus 314 v~f-~~g~~~~~~y~i~~~~~~~ 335 (753)
+.| ++++.......|.++++++
T Consensus 330 i~f~~~~~~~~~~~~i~~~~~~~ 352 (364)
T 3lop_A 330 VDFTDRSRPGSHYIELGVVGPNG 352 (364)
T ss_dssp EECSSTTSCSCCCCEEEEECTTS
T ss_pred eecCCCCcCCcceEEEEEEcCCC
Confidence 999 6665544556777777655
No 31
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.97 E-value=2.1e-29 Score=272.02 Aligned_cols=306 Identities=12% Similarity=0.085 Sum_probs=251.6
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-CCCCceEEEecCcHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-TEHPFFIRVTQNDSL 81 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-~~~~~~fr~~p~~~~ 81 (753)
|+.. ++++|.+++.++++|+.+++|++||| .+|..+.++.+++...++|+|+++++++ +.+ ..+|++||+.|++..
T Consensus 51 l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~ 128 (392)
T 3lkb_A 51 CVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSE 128 (392)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHH
Confidence 4444 78999999999999999889999999 6888899999999999999999866544 443 578999999999999
Q ss_pred HHHHHHHHHHH-cCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 82 QVKAISAVLQN-FSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 82 ~~~a~~~~l~~-~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
++.++++++.. +||++|++|+.+++||....+.+++.+++.|++++..+.++.+ ..|+...+.++++.++|+|++++
T Consensus 129 ~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~ 206 (392)
T 3lkb_A 129 QVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQN 206 (392)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEec
Confidence 99999998865 6999999999999999999999999999999999988877654 56899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCC--CChhhhHHHHHHHHhhCCCCCC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLP--KSKELGLFDRRWKSKLHSMKPN 238 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~ 238 (753)
+..++..+++++++.|+.. .|+.++++... . +.....+..+|++....+.+ ..+..++|.++|+++|+.
T Consensus 207 ~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~-~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---- 277 (392)
T 3lkb_A 207 VAGPVANILKDAKRLGLKM---RHLGAHYTGGP-D-LIALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR---- 277 (392)
T ss_dssp CHHHHHHHHHHHHHTTCCC---EEEECGGGCSH-H-HHHHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC----
T ss_pred CcchHHHHHHHHHHcCCCc---eEEEecCcccH-H-HHHhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC----
Confidence 9999999999999999743 56666544321 1 11234456888888775543 245678999999999986
Q ss_pred CCccccchh----HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcc----cc--
Q 037761 239 SSVTEINIS----GLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQ----FK-- 308 (753)
Q Consensus 239 ~~~~~~~~~----~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----f~-- 308 (753)
.|+.+ ++.+|||++++++|++++ +.. ....++++|.++|++++ |+
T Consensus 278 ----~p~~~~~~~~~~~yda~~~~~~al~~a-g~~--------------------~~~~~~~~v~~aL~~~~~~~~~~~~ 332 (392)
T 3lkb_A 278 ----PENFIESVNYTNGMLAAAIAVEAIRRA-QER--------------------FKRITNETVYQAIVGMNGPNAFKPG 332 (392)
T ss_dssp ----CHHHHTCHHHHHHHHHHHHHHHHHHHH-HHH--------------------HSSCCHHHHHHHHHTCCGGGCBCCS
T ss_pred ----CcccccchhHHHHHHHHHHHHHHHHHh-hcc--------------------CCCCCHHHHHHHHHhcCCCcCcccc
Confidence 45444 789999999999999998 210 01256789999999997 98
Q ss_pred -----cceeeEEe-eCCccceeEEEEEEEeccc-eEEEEeecCCCc
Q 037761 309 -----GLSGEFHL-VNGQLESSVFEIVNVIGTG-RVVGYWTSEKGL 347 (753)
Q Consensus 309 -----g~~G~v~f-~~g~~~~~~y~i~~~~~~~-~~vg~~~~~~~~ 347 (753)
|++|.+.| ++|++....+.|+++++++ +.++.|.....+
T Consensus 333 ~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~~~ 378 (392)
T 3lkb_A 333 FAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSALF 378 (392)
T ss_dssp SBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCHHH
T ss_pred cccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchhHH
Confidence 99999999 7777656678999998877 889888655543
No 32
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.96 E-value=9.3e-29 Score=266.77 Aligned_cols=303 Identities=15% Similarity=0.118 Sum_probs=245.3
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
|+.. ++++|.+++.++++|+.+++|.+||| .+|..+.++.+++..+++|+|+++++++ +. .+|++||+.|++..+
T Consensus 52 l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~ 127 (391)
T 3eaf_A 52 YIKRDYAYNPTTAEEYYREFRDRYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQ 127 (391)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHH
Confidence 4444 88999999999999997789999999 6889999999999999999999876554 33 679999999999999
Q ss_pred HHHHHHHHHH-cCCeEEEEEEe-eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHH--HhcCCccEEEE
Q 037761 83 VKAISAVLQN-FSWHEVVLMYE-DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSK--LSTMQTRVFIV 158 (753)
Q Consensus 83 ~~a~~~~l~~-~~w~~vail~~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~--l~~~~~~vIi~ 158 (753)
+.++++++.+ +||++|++|+. +++||.+..+.+++.+++.|++++..+.++.+ ..|+...+.+ +++.++|+|++
T Consensus 128 ~~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~ 205 (391)
T 3eaf_A 128 ACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWC 205 (391)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEE
Confidence 9999999866 69999999999 99999999999999999999999988888754 6699999999 99999999999
Q ss_pred EeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhccc-EEEEEEeC-----CCChhhhHHHHHHHHhh
Q 037761 159 HMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEG-VLGVRSHL-----PKSKELGLFDRRWKSKL 232 (753)
Q Consensus 159 ~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~-----~~~~~~~~F~~~~~~~~ 232 (753)
+++..++..+++++++.|+.. .++++++.. .... .....+..+| ++....+. .+.|. .+|.++|+++|
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~-~~~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~ 279 (391)
T 3eaf_A 206 GNTISSCSLLGRAMAKVGLDA---FLLTNVWGF-DERS-PQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMN 279 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTCCC---EEEECGGGC-STTH-HHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHT
T ss_pred ecCcHHHHHHHHHHHHCCCCc---eEEEeccCC-CHHH-HHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHh
Confidence 999999999999999999843 345544322 1111 1234456889 77766554 34455 67999999999
Q ss_pred CCCCCCCCcccc--chhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccc--
Q 037761 233 HSMKPNSSVTEI--NISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFK-- 308 (753)
Q Consensus 233 ~~~~~~~~~~~~--~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~-- 308 (753)
+.. .| +.+++.+|||++++++|++++... . ....++.+|.++|++..|+
T Consensus 280 ~~~-------~p~~~~~~~~~yda~~~l~~Al~~a~~~---------------g-----~~~~~~~~v~~aL~~~~~~~~ 332 (391)
T 3eaf_A 280 GVS-------EDQINLRVVQGFVNVWLLIKAIESVTSQ---------------D-----LQERGGEALKEALEANTFDLG 332 (391)
T ss_dssp TCC-------GGGCCHHHHHHHHHHHHHHHHHTTSCHH---------------H-----HHHHTHHHHHHHHHHCCBCST
T ss_pred CCC-------CcccccHHHHHHHHHHHHHHHHHHHHhc---------------C-----CCCCCHHHHHHHHHhCCCCCC
Confidence 831 44 488999999999999999986100 0 0125678999999998898
Q ss_pred ccee-eEEe-eCCccceeEEEEEEE-eccc-eEEEEeecCC
Q 037761 309 GLSG-EFHL-VNGQLESSVFEIVNV-IGTG-RVVGYWTSEK 345 (753)
Q Consensus 309 g~~G-~v~f-~~g~~~~~~y~i~~~-~~~~-~~vg~~~~~~ 345 (753)
|++| .+.| ++|+.....+.|+++ ++++ +.++.|....
T Consensus 333 G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 333 GITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEAPS 373 (391)
T ss_dssp TCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECCCT
T ss_pred CccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecCcc
Confidence 9999 9999 555444677899999 5655 8889885444
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.96 E-value=1.2e-28 Score=265.69 Aligned_cols=300 Identities=14% Similarity=0.193 Sum_probs=244.6
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCC--CCCCCceEEEecCcH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS--PTEHPFFIRVTQNDS 80 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~--~~~~~~~fr~~p~~~ 80 (753)
|+.. ++++|.+++..+++|+++++|++||||.+|..+.++.+++..+++|+|+++++++.++ ...+|++||+.|++.
T Consensus 65 l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (386)
T 3sg0_A 65 YFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDD 144 (386)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHH
T ss_pred EEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcH
Confidence 4444 7899999999999999998999999999999999999999999999999988887776 467899999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
.++.++++++.++||++|++|+.++++|.+..+.+++.+++.|++++..+.++.+ ..|+...+.++++.++|+|++++
T Consensus 145 ~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~dav~~~~ 222 (386)
T 3sg0_A 145 IMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPDAVFIAS 222 (386)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999877777654 56899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEe------CC-CC---hhhhHHHHHHHH
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSH------LP-KS---KELGLFDRRWKS 230 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~------~~-~~---~~~~~F~~~~~~ 230 (753)
+..++..+++++++.|+.. .++..+++... . +.....+..+|++....+ .+ .. +..++|.++|++
T Consensus 223 ~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 297 (386)
T 3sg0_A 223 AGTPAVLPQKALRERGFKG---AIYQTHGVATE-E-FIKLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKA 297 (386)
T ss_dssp CSGGGHHHHHHHHHTTCCS---EEECCGGGCSH-H-HHHHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHcCCCC---cEEeccccCCH-H-HHHhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHH
Confidence 9888999999999999853 35555544321 1 112244567888776532 12 22 457899999999
Q ss_pred hhCCCCCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhc-cccc
Q 037761 231 KLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNT-QFKG 309 (753)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~g 309 (753)
+|+.. .|+.+++.+|||++++++|++++..... .+...++.+|.++|+++ +|+|
T Consensus 298 ~~~~~-------~p~~~~~~~yda~~~~~~al~~a~~~~~------------------~g~~~~~~~~~~al~~~~~~~g 352 (386)
T 3sg0_A 298 ANGGA-------APTIFGVHLWDSMTLVENAIPAALKAAK------------------PGTPEFRAAIRDQIEKSKDLAL 352 (386)
T ss_dssp HTTTC-------CCCHHHHHHHHHHHHHHHHHHHHHHHCC------------------TTSHHHHHHHHHHHTTCCSEEE
T ss_pred HhCCC-------CCChhHHHHHHHHHHHHHHHHHhhhccC------------------CCCcchHHHHHHHHHhccCccc
Confidence 99863 4688999999999999999999832110 01224568999999999 8999
Q ss_pred ceeeEEe-eCCcc--ceeEEEEEEEeccc
Q 037761 310 LSGEFHL-VNGQL--ESSVFEIVNVIGTG 335 (753)
Q Consensus 310 ~~G~v~f-~~g~~--~~~~y~i~~~~~~~ 335 (753)
++|.+.| +++.. ....+.|+++++++
T Consensus 353 ~~G~~~f~~~~~~g~~~~~~~i~~~~~G~ 381 (386)
T 3sg0_A 353 NNGLSNMTPDNHNGYDERSAFLIEIRDGA 381 (386)
T ss_dssp TTEEECCCSSCSSCCCGGGCEEEEEETTE
T ss_pred cceeEEECCCcCCCCCCCceEEEEEECCE
Confidence 9999999 54332 13457888988754
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.96 E-value=8.4e-28 Score=256.57 Aligned_cols=298 Identities=14% Similarity=0.144 Sum_probs=242.2
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
|+.. ++++|..++..+++|+.+++|.+||||.+|..+.++.+++..+++|+|+++++ + +....+|++||+.|++..+
T Consensus 45 l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~ 122 (362)
T 3snr_A 45 IIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIM 122 (362)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHH
Confidence 4444 78999999999999999989999999999999999999999999999998876 4 3445679999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
+.++++++.++||++|++|+.++++|....+.+++.+++.|++++..+.++.+ ..++...+.++++.++|+|++++..
T Consensus 123 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~ 200 (362)
T 3snr_A 123 GKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASG 200 (362)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCH
T ss_pred HHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCc
Confidence 99999999999999999999999999999999999999999999887777654 5688999999999999999999989
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEe-------C---CCChhhhHHHHHHHHhh
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSH-------L---PKSKELGLFDRRWKSKL 232 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-------~---~~~~~~~~F~~~~~~~~ 232 (753)
.++..+++++++.|+.. .++...++.... +.....+..+|++....+ . +..|..++|.++|+++|
T Consensus 201 ~~a~~~~~~~~~~g~~~---p~i~~~g~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 275 (362)
T 3snr_A 201 TAAALPQTTLRERGYNG---LIYQTHGAASMD--FIRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKY 275 (362)
T ss_dssp HHHHHHHHHHHHTTCCS---EEEECGGGCSHH--HHHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCc---cEEeccCcCcHH--HHHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHh
Confidence 99999999999999854 346655544321 112244567888876532 1 12356899999999999
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhc-ccccce
Q 037761 233 HSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNT-QFKGLS 311 (753)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~g~~ 311 (753)
+.. .|+.+++.+|||++++++|++++..... .+.+.++.+|.++|+++ +|+|++
T Consensus 276 ~~~-------~p~~~~~~~yda~~~~~~al~~a~~~~~------------------~g~~~~~~~~~~al~~~~~~~g~~ 330 (362)
T 3snr_A 276 GPS-------SRSQFAGHSYDAFKVLERVVPVALKKAK------------------PGTQEFREALREAFLTEKDIAASQ 330 (362)
T ss_dssp CTT-------CCCHHHHHHHHHHHHHHHHHHHHHHHCC------------------TTSHHHHHHHHHHHHHCCCEECSS
T ss_pred CCC-------CCCchhHhHHHHHHHHHHHHHHhhcccc------------------CCCcchHHHHHHHHHhcCCcccce
Confidence 863 4688999999999999999999821100 01224578999999999 899999
Q ss_pred eeEEe-eCCcc--ceeEEEEEEEeccc
Q 037761 312 GEFHL-VNGQL--ESSVFEIVNVIGTG 335 (753)
Q Consensus 312 G~v~f-~~g~~--~~~~y~i~~~~~~~ 335 (753)
|.+.| +++.. ....+.|+++++++
T Consensus 331 G~~~f~~~~~~g~~~~~~~i~~~~~G~ 357 (362)
T 3snr_A 331 GVYNFTETDRYGLDDRSRILLTVKNGK 357 (362)
T ss_dssp CEECCCSSCSSCCCGGGCEEEEEETTE
T ss_pred eeEEeCCCCCCCCCCCCeEEEEEECCE
Confidence 99999 65322 13458888988754
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.95 E-value=1.2e-26 Score=249.76 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=238.0
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
++.. +++++..+...+++|+.+++|++|||+.+|..+.++.+++...++|+|++++... ...++++||+.+++..+
T Consensus 51 l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~ 127 (385)
T 1pea_A 51 TLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQN 127 (385)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGT
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHh
Confidence 4444 6789999999999999877999999999988888999999999999999875421 12467899999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
+..+++++.+.+|++|++|+.++.+|....+.+++.+++.|++++..+.++...+..++...++++++.++|+|++.++.
T Consensus 128 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~ 207 (385)
T 1pea_A 128 SAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVG 207 (385)
T ss_dssp HHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCT
T ss_pred HHHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEeccc
Confidence 99999999888999999999988899999999999999999998876555532247799999999998899999998888
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeC--CCChhhhHHHHHHHHhhCCCCCCCC
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHL--PKSKELGLFDRRWKSKLHSMKPNSS 240 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~~~~~F~~~~~~~~~~~~~~~~ 240 (753)
..+..++++++++|+..+...++.. .+... .. .....+..+|++....+. ...|..++|.++|+++|+...
T Consensus 208 ~~a~~~~~~~~~~G~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~---- 280 (385)
T 1pea_A 208 TGTAELYRAIARRYGDGRRPPIASL-TTSEA-EV-AKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENA---- 280 (385)
T ss_dssp HHHHHHHHHHHHHHCSSCCCCEEES-SCCHH-HH-TTSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTC----
T ss_pred ccHHHHHHHHHHcCCCcCCceEEec-ccchH-HH-HhcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCC----
Confidence 8899999999999986433344443 33321 11 111124578888776544 346888999999999987521
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-eCC
Q 037761 241 VTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL-VNG 319 (753)
Q Consensus 241 ~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g 319 (753)
.++.+++.+|||++++++|++++ +. .++++|.++|++++|+|++|.+.| +++
T Consensus 281 --~~~~~~~~~yda~~~~~~Al~~a-g~------------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~ 333 (385)
T 1pea_A 281 --TITAWAEAAYWQTLLLGRAAQAA-GN------------------------WRVEDVQRHLYDIDIDAPQGPVRVERQN 333 (385)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHH-TS------------------------CCHHHHHHHHTTCCEEETTEEEEECTTT
T ss_pred --CCChHHHHHHHHHHHHHHHHHHh-CC------------------------CCHHHHHHHHhhCcccCCCCCeEEcCCC
Confidence 46788999999999999999998 31 346899999999999999999999 644
Q ss_pred ccceeEEEEEEE-eccc-eEEEE
Q 037761 320 QLESSVFEIVNV-IGTG-RVVGY 340 (753)
Q Consensus 320 ~~~~~~y~i~~~-~~~~-~~vg~ 340 (753)
+.....+.|+++ +++. +.+..
T Consensus 334 ~~~~~~~~i~~~~~~g~~~~v~~ 356 (385)
T 1pea_A 334 NHSRLSSRIAEIDARGVFQVRWQ 356 (385)
T ss_dssp SCEEBCCEEEEECTTSCEEEEEE
T ss_pred CccccceEEEEEcCCCcEEEeec
Confidence 433566788888 4544 55544
No 36
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=1.4e-26 Score=241.43 Aligned_cols=266 Identities=18% Similarity=0.303 Sum_probs=191.8
Q ss_pred cceEEeeccCCCCcceEEEEE--cCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCC---CCChHHHH
Q 037761 378 PSLVVGTPVRLGFPQFLSVRE--DGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEM---AGTYDELL 452 (753)
Q Consensus 378 ~~l~v~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~ 452 (753)
++|+||+... +||.+..+ +..+++|++.|+++||+++|++ ++|++++++.++. ..+|.. +.+|++++
T Consensus 13 ~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~----~lg~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 84 (312)
T 1yae_A 13 RSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELST----ILGFTYEIRLVED-GKYGAQDDVNGQWNGMV 84 (312)
T ss_dssp CEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHH----HHCCEEEEEECSS-CCCCCBCTTTCCBCSHH
T ss_pred ceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHH----HcCCeEEEEecCC-CccceeccCCCcchHHH
Confidence 3899999754 45555410 0001578999999999999999 9998777665543 234442 56899999
Q ss_pred HHHHcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHH
Q 037761 453 YQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLW 532 (753)
Q Consensus 453 ~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l 532 (753)
.+|.+|++|++++++++|++|.+.++||.||+..+.+++++++.....+++.|+.||+. .|+
T Consensus 85 ~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~-----~p~------------- 146 (312)
T 1yae_A 85 RELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSL-----VPR------------- 146 (312)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC--------------------------------------
T ss_pred HHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeeccccc-----CCc-------------
Confidence 99999999999988999999999999999999999999999987666789999999991 132
Q ss_pred HHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCC---eEEEecCchHHHHHHHhhCCC-----------CCceecCC
Q 037761 533 LAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESH---FVGFQSGSFVEDFLVKQLNFS-----------RNQTRPLS 598 (753)
Q Consensus 533 ~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 598 (753)
|.+.....|++++||. |+ ++|++.++....++.+ ...+ ..++..+.
T Consensus 147 -----------------tv~~~~~~i~~~~dL~--g~~~~~vg~v~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 206 (312)
T 1yae_A 147 -----------------GSERMESPIDSADDLA--KQTKIEYGAVEDGATMTFFKK-SKISTYDKMWAFMSSRRQSVLVK 206 (312)
T ss_dssp -------------------------CCSHHHHH--TCSSSEEECBTTSHHHHHHHH-CCBHHHHHHHHHHHHTHHHHCBS
T ss_pred -----------------ccccccCCCCCHHHHh--hccCceEEEEeCChHHHHHHh-ccCchHHHHHHHHHhcCCCcccC
Confidence 5566667899999995 65 7998777666677763 1111 12456688
Q ss_pred CHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHH
Q 037761 599 NFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMD 678 (753)
Q Consensus 599 ~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~ 678 (753)
+..+++++|.+|+ |+++.+...+.+++++.| ++.+++..+...+++++++|+++|++.||++|.+|+++| .++
T Consensus 207 ~~~~~~~~l~~G~-----Da~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G-~~~ 279 (312)
T 1yae_A 207 SNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNC-NLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEG-KLH 279 (312)
T ss_dssp SHHHHHHHHHHSS-----EEEEEEHHHHHHHHTTCT-TEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHT-HHH
T ss_pred CHHHHHHHHHcCC-----cEEEeccHHHHHHHhcCC-CEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcC-CHH
Confidence 9999999998885 999999999999988876 799998888888999999999999999999999999999 999
Q ss_pred HHHHhhcCCCCCCCCcccC
Q 037761 679 RIEKKYFGENVMTPTLARS 697 (753)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~ 697 (753)
+|.+||+.. ..|+..+..
T Consensus 280 ~i~~kw~~~-~~c~~~~~~ 297 (312)
T 1yae_A 280 MMKEKWWRG-NGCPEEESK 297 (312)
T ss_dssp HHHHHHHCC-SCC------
T ss_pred HHHhhhcCC-CCCCCCCCc
Confidence 999999998 588865543
No 37
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.94 E-value=1.7e-26 Score=231.52 Aligned_cols=223 Identities=22% Similarity=0.328 Sum_probs=192.6
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.|+||.+. +..+++|++.|+++||+++|++ ++|+ ++++++. +|.+++.+|.+|
T Consensus 13 ~L~Vg~~--~~~pP~~~~--~~~d~~g~~~G~~vdl~~~ia~----~lg~--~~~~~~~---------~~~~~~~~l~~g 73 (243)
T 4h5g_A 13 KLVVATS--PDYAPFEFQ--SLVDGKNQVVGADIDMAQAIAD----ELGV--KLEILSM---------SFDNVLTSLQTG 73 (243)
T ss_dssp EEEEEEC--CCBTTTBEE--EEETTEEEEESHHHHHHHHHHH----HHTS--EEEEEEC---------CGGGHHHHHHTT
T ss_pred EEEEEEC--CCCCCcEee--eccCCCCcEEEeHHHHHHHHHH----HhCC--ceEEecc---------cHHHHHHHHHcC
Confidence 8999996 667777663 1116789999999999999999 9995 5566665 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++++|++|.+.++||.||+....++++++.+...
T Consensus 74 ~~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~--------------------------------------- 114 (243)
T 4h5g_A 74 KADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK--------------------------------------- 114 (243)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTT---------------------------------------
T ss_pred CCCcccccccCChhHccEEEccCccccCccccccccccccc---------------------------------------
Confidence 99999989999999999999999999999999999886544
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
+++++|| .|+++|+..|+..+.++.+ ..+..+++.+++..+++.+|.+|+ +|+
T Consensus 115 -------------------~~~~~dl--~g~~i~v~~g~~~~~~l~~--~~~~~~i~~~~~~~~~~~~l~~Gr----vD~ 167 (243)
T 4h5g_A 115 -------------------YKDLTSL--ESANIAAQKGTVPESMVKE--QLPKAQLTSLTNMGEAVNELQAGK----IDA 167 (243)
T ss_dssp -------------------CCSHHHH--HTSEEEEETTSHHHHHHHH--HCTTSEEEEESCHHHHHHHHHHTS----CSE
T ss_pred -------------------ccccccC--CCCEEEecCCcHHHHHHHH--hcccceeEEeCCHHHHHHHHHcCC----ccE
Confidence 8999999 5999999999999999986 567789999999999999999999 999
Q ss_pred EEeccccHHHHHhcCC-CCcEEe-CcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 619 IFEEIPYIKVFLKKYS-SKYTTA-GPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
++.+...+.+++.+.. ..+..+ .......+++++++|++| |++.||++|.+|+++| .+++|.+||+..
T Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG-~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 168 VHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEG-TYQSYLEKAASL 238 (243)
T ss_dssp EEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHT-HHHHHHHHHTTS
T ss_pred EEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHhcCC
Confidence 9999999888887763 122222 334455678999999999 9999999999999999 999999999875
No 38
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.93 E-value=1.7e-25 Score=224.22 Aligned_cols=223 Identities=17% Similarity=0.192 Sum_probs=187.7
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhc-CCccceEEEecCCCCCCCCCChHHHHHHHHc
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKL-GMKIHPQLVPYEDENGEMAGTYDELLYQIKL 457 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (753)
+|+||+. +.|+||.+. +++|++.|+++||+++|++ +| | +++++++. +|.+++.+|.+
T Consensus 10 tl~vg~~--~~~pP~~~~-----d~~G~~~G~~vdl~~~ia~----~l~g--~~~~~~~~---------~~~~~~~~l~~ 67 (243)
T 4gvo_A 10 TITVGTG--TQFPNVCFL-----DENGKLTGYDVELVKEIDK----RLPG--YKFKFKTM---------DFSNLLVSLGA 67 (243)
T ss_dssp EEEEEEC--SEETTTEEE-----CTTSCEESHHHHHHHHHHH----TCTT--EEEEEEEC---------CGGGHHHHHHT
T ss_pred eEEEEEC--CCCCCeEEE-----CCCCcEEEhHHHHHHHHHH----hccC--CeEEEEEC---------CHHHHHHHHHC
Confidence 8999996 778889887 7789999999999999999 98 7 45666665 79999999999
Q ss_pred CcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHh
Q 037761 458 KKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFIL 537 (753)
Q Consensus 458 ~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl 537 (753)
|++|+++++++.|++|.+.+.||.||+.....+++.++...
T Consensus 68 g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~--------------------------------------- 108 (243)
T 4gvo_A 68 GKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNN--------------------------------------- 108 (243)
T ss_dssp TSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCC---------------------------------------
T ss_pred CCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEecccc---------------------------------------
Confidence 99999998999999999999999998876665555544343
Q ss_pred hhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhh--CCCC-CceecCCCHHHHHHHHhcCCCCC
Q 037761 538 MQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQL--NFSR-NQTRPLSNFGEYKEALSNGSRKG 614 (753)
Q Consensus 538 ~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~g~~~~ 614 (753)
.+++++|| .|+++|+..++....++.+-. .... .....+.+..+++.+|..|+
T Consensus 109 -------------------~~~~~~dL--~g~~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr--- 164 (243)
T 4gvo_A 109 -------------------SINSTKDL--AGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGR--- 164 (243)
T ss_dssp -------------------SCSSGGGG--TTCEEEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTS---
T ss_pred -------------------ccCchHHh--cCCeEEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCC---
Confidence 39999999 699999999988777765311 1111 22345677889999999999
Q ss_pred CeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 615 GVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 615 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
+|+++.+...+.++.++....+.++++.+...+++++++|++| |++.||++|.+|+++| .+++|.+||++.+
T Consensus 165 -vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G-~~~~i~~kw~g~d 237 (243)
T 4gvo_A 165 -ADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDG-TLKKLSEKWLGAD 237 (243)
T ss_dssp -CSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHCGG
T ss_pred -ccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHCCCC
Confidence 9999999999998888774467788888888899999999999 9999999999999999 9999999999863
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.92 E-value=3.2e-25 Score=228.35 Aligned_cols=235 Identities=18% Similarity=0.308 Sum_probs=189.9
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCC-------CCChHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEM-------AGTYDEL 451 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~ 451 (753)
++++|+. ..|+||.+. +.+|++.|+++||+++|++ ++|++++++.++. ..+|.. +++|+++
T Consensus 42 ~l~vg~~--~~~~P~~~~-----~~~g~~~G~~vDll~~ia~----~lg~~~~~~~~~d-~~~g~~~~~~~~~~~~w~~~ 109 (292)
T 1pb7_A 42 VICTGPN--DTSPGSPRH-----TVPQCCYGFCIDLLIKLAR----TMNFTYEVHLVAD-GKFGTQERVNNSNKKEWNGM 109 (292)
T ss_dssp EEEEEEC----------C-----EEEEEEESHHHHHHHHHHH----HHTCCEEEEECTT-CCCCCEEECTTSSCEEECHH
T ss_pred eeecccC--CCCCCcccc-----ccccCcceeHHHHHHHHHH----HcCceEEEEEecC-CcccccccccccccCcHHHH
Confidence 6777776 555566554 4578999999999999999 9998777666542 234431 2589999
Q ss_pred HHHHHcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHH
Q 037761 452 LYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWL 531 (753)
Q Consensus 452 ~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~ 531 (753)
+++|.+|++|++++++++|++|.+.++||.||+..+.+++++++..
T Consensus 110 ~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~---------------------------------- 155 (292)
T 1pb7_A 110 MGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR---------------------------------- 155 (292)
T ss_dssp HHHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC----------------------------------
T ss_pred HHHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcC----------------------------------
Confidence 9999999999999899999999999999999999999999998753
Q ss_pred HHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCC---e-EEEecCchHHHHHHHhhC----CCCCceecCCCHHHH
Q 037761 532 WLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESH---F-VGFQSGSFVEDFLVKQLN----FSRNQTRPLSNFGEY 603 (753)
Q Consensus 532 l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~---~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 603 (753)
+++++||...++ + +|+..++..+.++.+... .+..++..+.+.+++
T Consensus 156 --------------------------i~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (292)
T 1pb7_A 156 --------------------------ITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEA 209 (292)
T ss_dssp --------------------------CCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHH
T ss_pred --------------------------CCCCcCccccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHH
Confidence 788888863343 3 578888888888763110 112355678899999
Q ss_pred HHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHh
Q 037761 604 KEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKK 683 (753)
Q Consensus 604 ~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~ 683 (753)
+++|.+|+ +|+++.+...+.|++++.| ++.+++..+...+++++++|+++|++.||++|.+|+++| .+++|.+|
T Consensus 210 ~~~l~~G~----vDa~i~d~~~~~~~~~~~~-~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G-~~~~l~~k 283 (292)
T 1pb7_A 210 IQAVRDNK----LHAFIWDSAVLEFEASQKC-DLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENG-FMEDLDKT 283 (292)
T ss_dssp HHHHHTTS----CSEEEEEHHHHHHHHHHCT-TEEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSS-HHHHHHHH
T ss_pred HHHHHcCC----ceEEEEcHHHHHHHHhcCC-CEEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCC-CHHHHHHh
Confidence 99999999 9999999999999998887 798988888888999999999999999999999999999 99999999
Q ss_pred hcCCCCCCC
Q 037761 684 YFGENVMTP 692 (753)
Q Consensus 684 ~~~~~~~~~ 692 (753)
|+.. ..|+
T Consensus 284 w~~~-~~c~ 291 (292)
T 1pb7_A 284 WVRY-QECD 291 (292)
T ss_dssp HTSS-SCCC
T ss_pred hCCC-CCCC
Confidence 9986 5675
No 40
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.92 E-value=4.2e-25 Score=227.94 Aligned_cols=215 Identities=18% Similarity=0.323 Sum_probs=180.6
Q ss_pred eeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCC-CCCChHHHHHHHHcCcccEEEeeeeeecccceeeecccccc
Q 037761 406 TYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGE-MAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYS 484 (753)
Q Consensus 406 ~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~ 484 (753)
++.|+++||+++|++ ++|++++++.++. ..+|. .+++|++++++|.+|++|++++++++|++|.+.++||.||+
T Consensus 67 ~~~G~~vdll~~ia~----~lg~~~~~~~~~~-~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~ 141 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAE----DMNFDFDLYIVGD-GKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFF 141 (294)
T ss_dssp EEESHHHHHHHHHHH----HHTEEEEEEECTT-CCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSE
T ss_pred CceEEhHHHHHHHHH----HcCCcEEEEECCC-CcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchH
Confidence 489999999999999 9998777665542 23443 56789999999999999999989999999999999999999
Q ss_pred ccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHh
Q 037761 485 ESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKL 564 (753)
Q Consensus 485 ~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL 564 (753)
..+.+++++++.. .|++++||
T Consensus 142 ~~~~~i~~~~~~~-----------------------------------------------------------~i~~~~dL 162 (294)
T 2rc8_A 142 STSLGILVRTRGT-----------------------------------------------------------ELSGIHDP 162 (294)
T ss_dssp EEEEEEEEETTSC-----------------------------------------------------------CCCSTTCH
T ss_pred hcceEEEEECCCC-----------------------------------------------------------CcCChhhh
Confidence 9999999998753 28899999
Q ss_pred h----hcCCeEEEecCchHHHHHHHhhCCCCC----ceecCCCHHHHHHHHhc--CCCCCCeeEEEeccccHHHHHhcC-
Q 037761 565 R----TESHFVGFQSGSFVEDFLVKQLNFSRN----QTRPLSNFGEYKEALSN--GSRKGGVSAIFEEIPYIKVFLKKY- 633 (753)
Q Consensus 565 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~--g~~~~~~~a~~~~~~~~~~~~~~~- 633 (753)
. ..|+++|+..++..+.++++ ..+.. +...+.+.++++++|.+ |+ +|+++.+...+.|++++.
T Consensus 163 ~~~~~~~g~~vg~~~gs~~~~~l~~--~~~~~~~~i~~~~~~~~~~~~~~l~~~~Gr----vDa~i~~~~~~~~~~~~~~ 236 (294)
T 2rc8_A 163 KLHHPSQGFRFGTVRESSAEDYVRQ--SFPEMHEYMRRYNVPATPDGVQYLKNDPEK----LDAFIMDKALLDYEVSIDA 236 (294)
T ss_dssp HHHSCCTTCCEECBTTSHHHHHHHH--HCHHHHHHHGGGCBSSHHHHHHHHHSSSCC----CSEEEEEHHHHHHHHHTCS
T ss_pred hhcCcccCeEEEEEcCChHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHhccCc----eeEEEecHHHHHHHHhhCC
Confidence 5 12889999999999999885 22221 22346789999999999 88 999999999999999875
Q ss_pred CCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCCCCCC
Q 037761 634 SSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTP 692 (753)
Q Consensus 634 ~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~~~~ 692 (753)
..++.+++..+...+++++++|+++|++.||++|.+|+++| .+++|.+||+.. ..|+
T Consensus 237 ~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G-~~~~l~~kw~~~-~~c~ 293 (294)
T 2rc8_A 237 DCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHG-FMDVLHDKWYKV-VPCG 293 (294)
T ss_dssp SSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTT-HHHHHHHHHCCC-----
T ss_pred CCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCC-CHHHHHHhhcCC-CCCC
Confidence 22788888888888899999999999999999999999999 999999999986 5665
No 41
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.92 E-value=2e-24 Score=216.66 Aligned_cols=227 Identities=19% Similarity=0.318 Sum_probs=200.4
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.++||.+. +.+|++.|+++|+++.+++ ++|+ +++++.. +|.+++.+|.+|
T Consensus 6 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~--~~~~~~~---------~~~~~~~~l~~g 63 (245)
T 3k4u_A 6 ELRVGLE--PGYLPFEMK-----DKKGNVIGFDVDLAREMAK----AMGV--KLKLVPT---------SWDGLIPGLVTE 63 (245)
T ss_dssp EEEEEEC--TTSTTTCEE-----ETTTEEESHHHHHHHHHHH----HHTC--EEEEEEC---------CGGGHHHHHHTT
T ss_pred eEEEEEC--CCcCCeeEE-----CCCCCCccchHHHHHHHHH----HhCC--eEEEEEc---------cHHHHHHHHhCC
Confidence 8999997 677788776 5688999999999999999 9996 4555555 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+++|.+.+.||.||+....++++++....
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 103 (245)
T 3k4u_A 64 KFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEK---------------------------------------- 103 (245)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTT----------------------------------------
T ss_pred CcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCccc----------------------------------------
Confidence 9999988899999999999999999999999999988543
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
.|++++||...|+++|+..++....++.+ ..+..++..+++..+++.+|.+|+ +|+
T Consensus 104 ------------------~i~~~~dL~~~g~~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~L~~Gr----vDa 159 (245)
T 3k4u_A 104 ------------------GVKSYKDLDKPELTLVTKFGVSAEYAAKR--LFKNAKLKTYDTEAEAVQEVLNGK----ADM 159 (245)
T ss_dssp ------------------TCCSGGGGCCSSCEEEEETTSHHHHHHHH--HCSSSEEEEESSHHHHHHHHHSSS----SEE
T ss_pred ------------------ccCCHHHhccCCcEEEEeCCcHHHHHHHh--hCCcCCEEEeCCHHHHHHHHHcCC----CcE
Confidence 39999999644899999999999999986 456788899999999999999999 999
Q ss_pred EEeccccHHHHHhcC-CCCcEEeCcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCCCCCC
Q 037761 619 IFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGENVMTP 692 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~~~~ 692 (753)
++.+...+.+++++. ...+.++...+...+++++++|++| |++.||++|.+|+++| .++++.++|+.....+.
T Consensus 160 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g-~~~~i~~k~~~~~~~~~ 234 (245)
T 3k4u_A 160 FIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDG-SYDELYERWFVDTKWLE 234 (245)
T ss_dssp EEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHTCCSGGG
T ss_pred EEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHhcCccccch
Confidence 999999999988776 4577778888888899999999999 9999999999999999 99999999999854443
No 42
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.91 E-value=1.7e-24 Score=219.28 Aligned_cols=235 Identities=18% Similarity=0.326 Sum_probs=191.2
Q ss_pred ceEEeeccCCCCcceEEEEEc--CCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCC---CCChHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVRED--GDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEM---AGTYDELLY 453 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~--~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 453 (753)
+|+|++...| ||.+.+.+ ..+++|++.|+++||+++|++ ++|+++++++++. ..+|.. +.+|.+++.
T Consensus 5 ~l~v~~~~~~---P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~----~lg~~~~~~~~p~-~~~g~~~~~~~~~~~~~~ 76 (259)
T 3g3k_A 5 SLIVTTILEE---PYVLFKKSDKPLYGNDRFEGYCIDLLRELST----HLGFTYEIRLVED-GKYGAQDDVNGQWNGMVR 76 (259)
T ss_dssp CEEEEECCBT---TTBEECCCSSCCCGGGGEESHHHHHHHHHHH----HHTCCEEEEECTT-CCCCCBCTTTCCBCHHHH
T ss_pred EEEEEEecCC---CeEEEeecccccCCCceeeeEHHHHHHHHHH----HcCCeEEEEECCC-CCcCcccCCCCcchHHHH
Confidence 7999997654 44444210 112369999999999999999 9998777777653 223331 468999999
Q ss_pred HHHcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHH
Q 037761 454 QIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWL 533 (753)
Q Consensus 454 ~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~ 533 (753)
+|++|++|++++++++|++|.+.++||.||+..+.+++++++.+
T Consensus 77 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~------------------------------------ 120 (259)
T 3g3k_A 77 ELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP------------------------------------ 120 (259)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSS------------------------------------
T ss_pred HHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcc------------------------------------
Confidence 99999999999889999999999999999999999999998753
Q ss_pred HHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCe---EEEecCchHHHHHHHhhCCC-----------CCceecCCC
Q 037761 534 AFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHF---VGFQSGSFVEDFLVKQLNFS-----------RNQTRPLSN 599 (753)
Q Consensus 534 ~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 599 (753)
|++++||. |++ +|+..++....++.+ ...+ ..++..+.+
T Consensus 121 ------------------------i~~~~dL~--g~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T 3g3k_A 121 ------------------------IDSADDLA--KQTKIEYGAVEDGATMTFFKR-SKISTYDKMWAFMSSRRQSVLVKS 173 (259)
T ss_dssp ------------------------CCSHHHHH--TCSSSEEEEETTSHHHHHHHH-CCSHHHHHHHHHHHHTHHHHEESS
T ss_pred ------------------------ccCHHHhc--cCCCceEEEecCcHHHHHHhh-ccchhHHHHHHHHHhcCCCcccCC
Confidence 89999995 554 888888888877773 1111 113356789
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHH
Q 037761 600 FGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDR 679 (753)
Q Consensus 600 ~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~ 679 (753)
.++++.+|.+|+ |+++.+...+.|+.++.+ ++.+++..+...+++++++|++||++.||++|.+|+++| .+++
T Consensus 174 ~~~~~~~l~~g~-----da~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G-~~~~ 246 (259)
T 3g3k_A 174 NEEGIQRVLTSD-----YAFLMESTTIEFVTQRNC-NLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQG-KLHM 246 (259)
T ss_dssp HHHHHHHHHHSS-----EEEEEEHHHHHHHHHHCT-TEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC--CHH
T ss_pred HHHHHHHHHhCC-----eEEEechHHHHHHhcCCc-eEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcC-hHHH
Confidence 999999999996 899999999999888866 899998888888999999999999999999999999999 9999
Q ss_pred HHHhhcCCCCCCC
Q 037761 680 IEKKYFGENVMTP 692 (753)
Q Consensus 680 ~~~~~~~~~~~~~ 692 (753)
|.+||+.. ..|+
T Consensus 247 i~~kw~~~-~~c~ 258 (259)
T 3g3k_A 247 MKEKWWRG-NGCP 258 (259)
T ss_dssp HHHHHHCC---CC
T ss_pred HHHhhcCC-CCCC
Confidence 99999996 5676
No 43
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.91 E-value=1.1e-23 Score=218.39 Aligned_cols=274 Identities=7% Similarity=0.058 Sum_probs=210.2
Q ss_pred ceeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhh-ccCCccEEeecCCCCCCCCCCCCceEEEecCcH
Q 037761 3 KLLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELG-EKAQVPIISFFETSPALSPTEHPFFIRVTQNDS 80 (753)
Q Consensus 3 ~l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~-~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~ 80 (753)
+|+.+ |+++| +..++++|+ +++|.+||||.+|+.+.++++++ ...++|+|++++++. .....+.|+||+. +.
T Consensus 34 ~l~~~D~~~~~--a~~~~~~l~-~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~--~~ 107 (325)
T 2h4a_A 34 PVQVFDTSMNS--VQDIIAQAK-QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLS--PE 107 (325)
T ss_dssp CEEEEETTTSC--HHHHHHHHH-HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCC--HH
T ss_pred eEEEEECCCCh--HHHHHHHHH-HCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECC--HH
Confidence 56666 77887 678888888 56999999999999999999999 789999999876542 2223345666654 45
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
.++.++++++...|.++++||+.+++||++..+.|++.+++.|++++..+.+..+ .||...|+++ ..+||+|++.+
T Consensus 108 ~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~---~d~~~~l~~i-~~~pDaV~~~~ 183 (325)
T 2h4a_A 108 DEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP---ADVTYFVQEN-NSNTTALYAVA 183 (325)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST---THHHHHHHHS-TTCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCH---HHHHHHHHhc-CCCCCEEEEeC
Confidence 5789999999878999999999999999999999999999999999998888743 5999999999 57899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEE-eC--CCChhhhHHHHHHHHhhCCCCC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRS-HL--PKSKELGLFDRRWKSKLHSMKP 237 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~-~~--~~~~~~~~F~~~~~~~~~~~~~ 237 (753)
+..++..+.++++..|. +...+.++.+......+........+|++.... +. ++.+.+++|.++|++.+
T Consensus 184 ~~~~~~~i~~~~~~~g~---~~pl~~~~~~~~~s~~~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----- 255 (325)
T 2h4a_A 184 SPTELAEXKGYLTNIVP---NLAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----- 255 (325)
T ss_dssp CHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH-----
T ss_pred CHHHHhhhhhhHhhcCC---CCCEEEeccccccCCCCCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc-----
Confidence 99999888888887663 445566666652111222345567899876653 32 34567777877665432
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-
Q 037761 238 NSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL- 316 (753)
Q Consensus 238 ~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f- 316 (753)
.+..+.+++|||+.+++++ .++ . .+.+..|+|+||.++|
T Consensus 256 -----~~~rl~AlgyDA~~l~~~l-~~l------------------------------~----~~~~~~~~G~tG~l~~~ 295 (325)
T 2h4a_A 256 -----QLMRLYAMGADAWLLINQF-NEL------------------------------R----QVPGYRLSGLTGILSAD 295 (325)
T ss_dssp -----HHHHHHHHHHHHHHHHHTH-HHH------------------------------H----HSTTCCEEETTEEEEEC
T ss_pred -----chHHHHHHHHHHHHHHHHH-HHH------------------------------h----hCCCCeeccCceeEEEC
Confidence 3556679999999986553 333 0 1344689999999999
Q ss_pred eCCccceeEEEEEEEeccc
Q 037761 317 VNGQLESSVFEIVNVIGTG 335 (753)
Q Consensus 317 ~~g~~~~~~y~i~~~~~~~ 335 (753)
++|+. .....+.++++++
T Consensus 296 ~~g~~-~R~l~~~~~~~G~ 313 (325)
T 2h4a_A 296 TNCNV-ERDMTWYQYQDGA 313 (325)
T ss_dssp TTCBE-EEECEEEEEETTE
T ss_pred CCCeE-EEeechhhccCCe
Confidence 89998 6678888888765
No 44
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.91 E-value=1.1e-23 Score=210.29 Aligned_cols=222 Identities=20% Similarity=0.311 Sum_probs=192.0
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.|+||.+.. +.+|++.|+++|+++.+++ ++|++++ ++.. +|.+++.+|.+|
T Consensus 4 ~l~v~~~--~~~~P~~~~~----~~~g~~~G~~~dl~~~i~~----~~g~~~~--~~~~---------~~~~~~~~l~~g 62 (237)
T 3kzg_A 4 NLTIGTS--KFNPPFEVWS----GNNSSLYGFDIDLMQEICR----RLHATCT--FEAY---------IFDDLFPALKNR 62 (237)
T ss_dssp EEEEEEE--SEETTTEECC----CTTSCCBSHHHHHHHHHHH----HTTCEEE--EEEE---------CGGGHHHHHHTT
T ss_pred eEEEEEC--CCCCCeEEEe----CCCCCEeeehHHHHHHHHH----HhCCceE--EEEc---------CHHHHHHHHhCC
Confidence 7899997 5577887731 2678899999999999999 9996554 5554 689999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+++|.+.+.||.||+....++++++...
T Consensus 63 ~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 101 (237)
T 3kzg_A 63 EVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK----------------------------------------- 101 (237)
T ss_dssp SSSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS-----------------------------------------
T ss_pred CCCEEEEccccChhHhccceeeeeeeecceEEEEECCCC-----------------------------------------
Confidence 999998889999999999999999999999999998753
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
+++++|| .|+++|+..|+....++.+ ..+..++..+.+..+++.+|.+|+ +|+
T Consensus 102 -------------------~~~~~dL--~g~~i~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~G~----vDa 154 (237)
T 3kzg_A 102 -------------------ISTFDDL--HGKKIGVRKGTPYARQVLS--ENRNNQVIFYELIQDMLLGLSNNQ----VDA 154 (237)
T ss_dssp -------------------CCSGGGG--TTCEEEEETTSTHHHHHHH--TCSSCEEEEESSHHHHHHHHHTTS----SSE
T ss_pred -------------------CCCHHHh--CCCEEEEecCCHHHHHHHH--hCCCCcEEEeCCHHHHHHHHHcCC----CCE
Confidence 8999999 5999999999997777775 566678889999999999999999 999
Q ss_pred EEeccccHHHHHhcCC------C-CcEEeCccc-ccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCCC
Q 037761 619 IFEEIPYIKVFLKKYS------S-KYTTAGPIY-RTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGENV 689 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~~------~-~l~~~~~~~-~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~ 689 (753)
++.+...+.+++++.. . ++.+++..+ ...+++++++|+++ |++.||++|.+|+++| .+++|.+||+....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G-~~~~i~~k~~~~~~ 233 (237)
T 3kzg_A 155 SLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADG-TYLRLYSEYFEGHH 233 (237)
T ss_dssp EEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHHHSS-HHHHHHHHHC----
T ss_pred EEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHHHHHHHHHHHHHCC-cHHHHHHHHhCccc
Confidence 9999999999988753 2 788888777 78899999999988 9999999999999999 99999999999754
Q ss_pred C
Q 037761 690 M 690 (753)
Q Consensus 690 ~ 690 (753)
.
T Consensus 234 ~ 234 (237)
T 3kzg_A 234 H 234 (237)
T ss_dssp -
T ss_pred c
Confidence 3
No 45
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.91 E-value=6.5e-24 Score=217.84 Aligned_cols=213 Identities=18% Similarity=0.354 Sum_probs=176.1
Q ss_pred ceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCC-CCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccc
Q 037761 405 TTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGE-MAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPY 483 (753)
Q Consensus 405 ~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~ 483 (753)
+++.|+++|+++++++ ++|++++++..+. ..+|. .+++|++++.+|.+|++|+++++++++++|.+.++||.||
T Consensus 55 ~~~~G~~~dl~~~i~~----~lg~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~ 129 (284)
T 2a5s_A 55 KCCKGFCIDILKKLSR----TVKFTYDLYLVTN-GKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPF 129 (284)
T ss_dssp EEEESHHHHHHHHHHH----HHTCCEEEEECCS-SSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCC
T ss_pred ceeeEEhHHHHHHHHH----HCCCCEEEEEccC-CccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCc
Confidence 4789999999999999 9998776665542 23343 4678999999999999999998999999999999999999
Q ss_pred cccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhH
Q 037761 484 SESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKK 563 (753)
Q Consensus 484 ~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~d 563 (753)
+.++.+++++++.. +++++|
T Consensus 130 ~~~~~~~~~~~~~~------------------------------------------------------------~~~~~d 149 (284)
T 2a5s_A 130 VETGISVMVSRGTQ------------------------------------------------------------VTGLSD 149 (284)
T ss_dssp EEECEEEEEETTCC------------------------------------------------------------CCSTTS
T ss_pred hhcCEEEEEECCcc------------------------------------------------------------cccccc
Confidence 99999999998753 566666
Q ss_pred hhhc-------CCeEEEecCchHHHHHHHhhCCCCC--ceecC--CCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhc
Q 037761 564 LRTE-------SHFVGFQSGSFVEDFLVKQLNFSRN--QTRPL--SNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKK 632 (753)
Q Consensus 564 L~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~ 632 (753)
|..+ ++++|+..+++....+.+ .++.. ++..+ .+.++++++|.+|+ +|+++.+...+.+++++
T Consensus 150 l~~~~~~~l~~~~~vg~v~~~s~~~~l~~--~~~~~~~~i~~~~~~~~~~~l~~l~~G~----vDa~i~d~~~~~~~~~~ 223 (284)
T 2a5s_A 150 KKFQRPHDYSPPFRFGTVPNGSTERNIRN--NYPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDAAVLNYKAGR 223 (284)
T ss_dssp HHHHSGGGSSSCCCEECCTTSHHHHHHHT--TCHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHT
T ss_pred cccCChhHcCCCceEEEEeCCchHHHHHH--HHHHHHHHHHhccCCCHHHHHHHHHcCC----eeEEEEchHHHHHHHhc
Confidence 6422 678998766665666663 33322 34555 78999999999999 99999999999999987
Q ss_pred C--CCCcEEeC--cccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCCCCCC
Q 037761 633 Y--SSKYTTAG--PIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTP 692 (753)
Q Consensus 633 ~--~~~l~~~~--~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~~~~ 692 (753)
. | ++.+++ ..+...+++++++|+++|++.||++|.+|+++| .+++|.+||+.. .|.
T Consensus 224 ~~~~-~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g-~~~~i~~kw~~~--~c~ 283 (284)
T 2a5s_A 224 DEGC-KLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDG-EMEELETLWLTG--ICH 283 (284)
T ss_dssp CTTS-CEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHT-HHHHHHHHHTCC--CCC
T ss_pred CCCC-CEEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhhhc--cCC
Confidence 6 4 677774 466777899999999999999999999999999 999999999985 564
No 46
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.91 E-value=1.8e-23 Score=219.11 Aligned_cols=278 Identities=9% Similarity=0.029 Sum_probs=210.6
Q ss_pred ceeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhh-ccCCccEEeecCCCCCCCCCCCCceEEEecCcH
Q 037761 3 KLLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELG-EKAQVPIISFFETSPALSPTEHPFFIRVTQNDS 80 (753)
Q Consensus 3 ~l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~-~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~ 80 (753)
+|+.. |+++|.++ +.+++.+++|.+||||.+|+.+.++.+.. +...+|+++.++++. . ...|++||+.+++.
T Consensus 36 ~l~~~D~~~~~~~a---a~~~~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~f~~~~~~~ 109 (327)
T 3ckm_A 36 PVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-S--RAIPQLCYYGLSPE 109 (327)
T ss_dssp CEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTT-C--CCCTTEEECCCCHH
T ss_pred eEEEEeCCCCHHHH---HHHHHHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcc-c--ccCCCeEEEecChH
Confidence 45555 78998765 45667778999999999999888877655 455666666544333 2 23478999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 81 LQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 81 ~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
.++.++++++...|++++++++.+++||++..+.|++.+++.|++|+..+.++.. +....+.+++..++|+|++.+
T Consensus 110 ~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~----~~~~~~~~~~~~~~dai~~~~ 185 (327)
T 3ckm_A 110 DEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP----ADVTYFVQENNSNTTALYAVA 185 (327)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST----THHHHHHHHSCTTCCEEEECC
T ss_pred HHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCC----chhhHHHHHhccCCcEEEEEc
Confidence 9999999999888999999999999999999999999999999999998888643 444667788889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEE-e--CCCChhhhHHHHHHHHhhCCCCC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRS-H--LPKSKELGLFDRRWKSKLHSMKP 237 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~-~--~~~~~~~~~F~~~~~~~~~~~~~ 237 (753)
+..++..+++++++.|+. ..++.++.+...............+|++.... + .++.+..++|.++|+++++.
T Consensus 186 ~~~~~~~i~~q~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--- 259 (327)
T 3ckm_A 186 SPTELAEMKGYLTNIVPN---LAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL--- 259 (327)
T ss_dssp CHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH---
T ss_pred CHHHHHHHHHHHHhhhcc---CCEEeeeccccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC---
Confidence 999999999999998853 35666665543222222233345677765543 2 34567888888888877653
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhcccccceeeEEe-
Q 037761 238 NSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHL- 316 (753)
Q Consensus 238 ~~~~~~~~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~f- 316 (753)
..+.+++|||+.+++++.+.. .+....|.|++|.++|
T Consensus 260 -------~~~~AlgyDA~~l~~~l~~~~-----------------------------------~~~~~~f~G~tG~i~fd 297 (327)
T 3ckm_A 260 -------MRLYAMGADAWLLINQFNELR-----------------------------------QVPGYRLSGLTGILSAD 297 (327)
T ss_dssp -------HHHHHHHHHHHHHHHTHHHHH-----------------------------------HSTTCCEEETTEEEEEC
T ss_pred -------CchHHHHHHHHHHHHHHHHhc-----------------------------------CCCCCCceeceEEEEEC
Confidence 336788999998876554432 1234579999999999
Q ss_pred eCCccceeEEEEEEEeccc-eEEE
Q 037761 317 VNGQLESSVFEIVNVIGTG-RVVG 339 (753)
Q Consensus 317 ~~g~~~~~~y~i~~~~~~~-~~vg 339 (753)
+||+. .....+.++++++ +++.
T Consensus 298 ~~G~~-~r~l~~~~~~~G~~vpv~ 320 (327)
T 3ckm_A 298 TNCNV-ERDMTWYQYQDGAIVPVV 320 (327)
T ss_dssp TTCBE-EEECEEEEEETTEEEECC
T ss_pred CCCCC-ccccEEEEEECCEEEEcc
Confidence 89987 5667888888866 6554
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.91 E-value=1.9e-23 Score=210.14 Aligned_cols=219 Identities=23% Similarity=0.453 Sum_probs=195.3
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+|++. +.|+||.+. .+|++.|+++|+++.+++ ++|+++++ +.. +|.+++.+|.+|
T Consensus 25 ~l~v~~~--~~~~P~~~~------~~g~~~G~~~dl~~~i~~----~~g~~~~~--~~~---------~~~~~~~~l~~g 81 (249)
T 4f3p_A 25 ELVVGTD--TSFMPFEFK------QGDKYVGFDLDLWAEIAK----GAGWTYKI--QPM---------DFAGLIPALQTQ 81 (249)
T ss_dssp CEEEEEE--SCBTTTBEE------ETTEEESHHHHHHHHHHH----HHTCCEEE--EEE---------CGGGHHHHHHTT
T ss_pred eEEEEeC--CCCCCeEEe------cCCeEEEEhHHHHHHHHH----HcCCceEE--Eec---------CHHHHHHHHHCC
Confidence 8999997 566777663 468899999999999999 99965554 444 689999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+++|.+.+.||.||+....+++++++..
T Consensus 82 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 120 (249)
T 4f3p_A 82 NIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNT----------------------------------------- 120 (249)
T ss_dssp SCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCC-----------------------------------------
T ss_pred CCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCC-----------------------------------------
Confidence 999988889999999999999999999999999998753
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
.|++++|| .|+++|+..++....++.+ ..+..++..+.+..+++++|.+|+ +|+
T Consensus 121 ------------------~i~~~~dL--~g~~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~L~~Gr----vDa 174 (249)
T 4f3p_A 121 ------------------TIKSIDDL--NGKVIAAKTGTATIDWIKA--HLKPKEIRQFPNIDQAYLALEAGR----VDA 174 (249)
T ss_dssp ------------------SCCSSGGG--TTSEEEEETTSHHHHHHHH--HCCCSEEEEESSHHHHHHHHHTTS----SSE
T ss_pred ------------------CcCChHHh--CCCEEEEeCCChHHHHHHh--cCCCceEEEcCCHHHHHHHHHcCC----eeE
Confidence 28999999 5999999999999999986 456778889999999999999999 999
Q ss_pred EEeccccHHHHHhcC-CCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 619 IFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
++.+...+.+++++. ..++.+++..+...+++++++|++++.+.||++|.+|+++| .++++.++|++..
T Consensus 175 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 175 AMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADG-RYAKIYKKWFGSE 244 (249)
T ss_dssp EEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHT-HHHHHHHHHHSSC
T ss_pred EEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHHHHhCC-cHHHHHHHHcCCC
Confidence 999999999999887 45788888888888999999999999999999999999999 9999999999974
No 48
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.90 E-value=8.9e-24 Score=211.05 Aligned_cols=220 Identities=15% Similarity=0.236 Sum_probs=191.7
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.|+||.+. +++|++.|+++|+++.+++ ++|+ +++++.. +|.+++.+|++|
T Consensus 16 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~--~~~~~~~---------~~~~~~~~l~~g 73 (239)
T 3kbr_A 16 VLRVATT--GDYKPFSYR-----TEEGGYAGFDVDMAQRLAE----SLGA--KLVVVPT---------SWPNLMRDFADD 73 (239)
T ss_dssp EEEEEEC--SEETTTEEE-----CTTSCEESHHHHHHHHHHH----HTTC--EEEEEEC---------CTTTHHHHHHTT
T ss_pred eEEEEEC--CCCCCeeEE-----CCCCCEEeehHHHHHHHHH----HHCC--ceEEEEe---------CHHHHHHHHHCC
Confidence 8999996 667788876 6689999999999999999 9996 5555655 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+++|.+.+.||.||+....++++++++...
T Consensus 74 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 114 (239)
T 3kbr_A 74 RFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAR--------------------------------------- 114 (239)
T ss_dssp CCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGG---------------------------------------
T ss_pred CcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccc---------------------------------------
Confidence 99999888999999999999999999999999999876433
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
|++++||...|+++|+..++....++.+ ..+..++..+++..+++.+|.+|+ +|+
T Consensus 115 -------------------i~~~~dL~~~g~~v~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~gr----vDa 169 (239)
T 3kbr_A 115 -------------------FQTLEQIDQPGVTAIVNPGGTNEKFARA--NLKKARILVHPDNVTIFQQIVDGK----ADL 169 (239)
T ss_dssp -------------------GSSHHHHSSTTCEEEECTTSHHHHHHHH--HCSSSEEEECCCTTTHHHHHHTTS----CSE
T ss_pred -------------------cCCHHHhcCCCcEEEEcCCCcHHHHHHH--hCCCCceEEeCCHHHHHHHHHcCC----cCE
Confidence 8999999645889999999999999986 466788899999999999999999 999
Q ss_pred EEeccccHHHHHhcCCCCcEEeC--cccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 619 IFEEIPYIKVFLKKYSSKYTTAG--PIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
++.+...+.+++++.. ++.++. ..+...+++++++| ++ |++.||++|.+|+++| .++++.++|++.
T Consensus 170 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k-~~~l~~~ln~~l~~l~~~g-~~~~i~~k~~~~ 238 (239)
T 3kbr_A 170 MMTDAIEARLQSRLHP-ELCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSG-LLRQRMEHWLEY 238 (239)
T ss_dssp EEEEHHHHHHHHHHCT-TEEECCCC-CCCCEEECCEECS-CHHHHHHHHHHHHHHHHHT-HHHHHHHHHC--
T ss_pred EEEchHHHHHHHHhCC-CcEEecCCCCccccceEEEEcC-CHHHHHHHHHHHHHHHHCC-cHHHHHHHHhcc
Confidence 9999999999998865 455554 34567788999999 76 9999999999999999 999999999974
No 49
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.90 E-value=3.5e-23 Score=205.73 Aligned_cols=217 Identities=18% Similarity=0.350 Sum_probs=190.0
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+|++. +.|+||.+. +++|++.|+++|+++++++ ++|++ ++++.. +|.+++.+|.+|
T Consensus 6 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~~--~~~~~~---------~~~~~~~~l~~g 63 (232)
T 3i6v_A 6 TVRMGTE--GAYPPYNFI-----NDAGEVDGFERELGDELCK----RAGLT--CEWVKN---------DWDSIIPNLVSG 63 (232)
T ss_dssp CEEEEEC--SEETTTEEE-----CTTSCEESHHHHHHHHHHH----HHTCC--EEEEEC---------CGGGHHHHHHTT
T ss_pred EEEEEEC--CCCCCeeEE-----CCCCCEeeehHHHHHHHHH----HcCCc--eEEEEC---------CHHHHHHHHHCC
Confidence 7999986 677888887 6789999999999999999 99965 555555 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|+++++++.|++|.+.+.||.||+....++++++..
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 101 (232)
T 3i6v_A 64 NYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD------------------------------------------ 101 (232)
T ss_dssp SCSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST------------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC------------------------------------------
Confidence 99998889999999999999999999999999998652
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
++|| .| ++|+..|+....++.+ . ..++..+.+.++++.+|.+|+ +|+
T Consensus 102 ----------------------~~dL--~g-~igv~~g~~~~~~l~~--~--~~~~~~~~~~~~~~~~L~~Gr----vDa 148 (232)
T 3i6v_A 102 ----------------------GADL--SG-IVAAQTATIQAGYIAE--S--GATLVEFATPEETIAAVRNGE----ADA 148 (232)
T ss_dssp ----------------------TCCT--TS-EEEEETTSHHHHHHHH--S--SSEEEEESSHHHHHHHHHTTS----SSE
T ss_pred ----------------------hHHh--CC-CEEEecCchHHHHHHh--c--CCeEEEeCCHHHHHHHHHcCC----cCE
Confidence 4677 58 9999999999999995 2 578888999999999999999 999
Q ss_pred EEeccccHHHHHhcCCCCcEEeCc-ccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCCCCCCC
Q 037761 619 IFEEIPYIKVFLKKYSSKYTTAGP-IYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPT 693 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~~~~~ 693 (753)
++.+...+.+++++...++.++.. .+...+++++++|+++ |++.||++|.+|.++| .++++.+||++....+..
T Consensus 149 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G-~~~~i~~k~~~~~~~~~~ 224 (232)
T 3i6v_A 149 VFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDG-TLNTMIKKWFGEDAAVYE 224 (232)
T ss_dssp EEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTS-HHHHHHHHHHCTTSCCC-
T ss_pred EEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCC-hHHHHHHHHcCCCCCccc
Confidence 999999999999887347877775 4566789999999998 9999999999999999 999999999998554443
No 50
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.90 E-value=3.2e-23 Score=210.98 Aligned_cols=221 Identities=18% Similarity=0.302 Sum_probs=195.5
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.|+||.+. +++|++.|+++|+++.+++ ++|+ +++++.. +|.+++.+|.+|
T Consensus 22 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~--~~~~~~~---------~~~~~~~~l~~g 79 (268)
T 3hv1_A 22 KIKIGFD--ATFVPMGYE-----EKDGSYIGFDIDLANAVFK----LYGI--DVEWQAI---------DWDMKETELKNG 79 (268)
T ss_dssp EEEEEEC--TEETTTEEE-----CTTSCEECHHHHHHHHHHH----TTTC--EEEEEEC---------CGGGHHHHHHHT
T ss_pred cEEEEEC--CCCCCceEE-----CCCCCEEEehHHHHHHHHH----HhCC--cEEEEEC---------CHHHHHHHHHCC
Confidence 8999997 567788886 6689999999999999999 9995 5556665 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+.+|.+.+.||.||+....++++++...
T Consensus 80 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 118 (268)
T 3hv1_A 80 TIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSSG----------------------------------------- 118 (268)
T ss_dssp SCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGGC-----------------------------------------
T ss_pred CCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCCC-----------------------------------------
Confidence 999998889999999999999999999999999998762
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhC-----CCCCceecCCCHHHHHHHHhcCCCC
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLN-----FSRNQTRPLSNFGEYKEALSNGSRK 613 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~~ 613 (753)
|++++|| .|+++|+..++....++.+... .+..+++.+.+..+++.+|.+|+
T Consensus 119 -------------------i~~~~dL--~g~~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr-- 175 (268)
T 3hv1_A 119 -------------------IDSVAGM--AGKTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR-- 175 (268)
T ss_dssp -------------------CCSSGGG--TTCCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS--
T ss_pred -------------------CCCHHHh--CCCEEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC--
Confidence 8999999 6999999999999988874211 22357788899999999999999
Q ss_pred CCeeEEEeccccHHHHHhcCC--CCcEEeCcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 614 GGVSAIFEEIPYIKVFLKKYS--SKYTTAGPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 614 ~~~~a~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
+|+++.+...+.+++++.. .++.+++..+...+++++++|+++ |++.||++|.+|.++| .+++|.++|++..
T Consensus 176 --vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g-~~~~i~~k~~~~~ 250 (268)
T 3hv1_A 176 --IDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNG-EFQKISNKWFGED 250 (268)
T ss_dssp --CSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHT-HHHHHHHHHHSSC
T ss_pred --CCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHhcCCC
Confidence 9999999999999998873 578888877888889999999998 9999999999999999 9999999999874
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.90 E-value=5.2e-23 Score=205.86 Aligned_cols=216 Identities=25% Similarity=0.354 Sum_probs=193.5
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.++||.+. +.+|++.|+++|+++.+++ ++|+ ++++++. +|.+++.+|.+|
T Consensus 12 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~--~~~~~~~---------~~~~~~~~l~~g 69 (242)
T 3del_B 12 KFIVGTN--ATYPPFEFV-----DKRGEVVGFDIDLAREISN----KLGK--TLDVREF---------SFDALILNLKQH 69 (242)
T ss_dssp EEEEEEC--SCBTTTBEE-----CTTSCEESHHHHHHHHHHH----HHTC--EEEEEEC---------CGGGHHHHHHTT
T ss_pred cEEEEeC--CCCCCeeEE-----CCCCCEEEeeHHHHHHHHH----HcCC--ceEEEEc---------CHHHHHHHHhCC
Confidence 8999995 677788776 6789999999999999999 9995 5556665 799999999999
Q ss_pred cccEEEeeeeeecccceeeecccccc--ccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHH
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYS--ESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFI 536 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~--~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lv 536 (753)
++|++++++..+++|.+.+.| .||+ ....++++++..
T Consensus 70 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~---------------------------------------- 108 (242)
T 3del_B 70 RIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE---------------------------------------- 108 (242)
T ss_dssp SSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC----------------------------------------
T ss_pred CcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCC----------------------------------------
Confidence 999998889999999999999 9999 889999999873
Q ss_pred hhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCe
Q 037761 537 LMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGV 616 (753)
Q Consensus 537 l~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 616 (753)
.+++++|| .|+++|+..++....++.+ .+..++..+.+..+++.+|.+|+ +
T Consensus 109 --------------------~i~~~~dL--~g~~i~v~~g~~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~g~----v 159 (242)
T 3del_B 109 --------------------NKHPLPLT--QYRSVAVQTGTYQEAYLQS---LSEVHIRSFDSTLEVLMEVMHGK----S 159 (242)
T ss_dssp --------------------CSCCCCGG--GSSCEEEETTSHHHHHHHH---STTCCEEEESSHHHHHHHHHTTS----S
T ss_pred --------------------CCCCHHHh--CCCEEEEEcCcHHHHHHHh---CCCceEEEECCHHHHHHHHHcCC----C
Confidence 38999999 5999999999999999984 56778889999999999999999 9
Q ss_pred eEEEeccccHHHHHhcCCCCcEEeCcccccCc----eEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 617 SAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDG----LGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 617 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
|+++.+...+.+++++.. .+.++...+...+ ++++++|+++ |++.||++|.+|.++| .+++|.+||+...
T Consensus 160 Da~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~~ 234 (242)
T 3del_B 160 PVAVLEPSIAQVVLKDFP-ALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEG-VLAELEQKWGLNN 234 (242)
T ss_dssp SEEEECHHHHHHHGGGCT-TEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTT-HHHHHHHHTTGGG
T ss_pred CEEEecHHHHHHHHHhCC-CeEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHCCCC
Confidence 999999999999998876 4888877777777 9999999998 9999999999999999 9999999999874
No 52
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.89 E-value=6.6e-23 Score=202.72 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=186.3
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.|+||.+. +++|++.|+++|+++.+++ ++|+++ +++.. +|.+++.+|.+|
T Consensus 3 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~~~--~~~~~---------~~~~~~~~l~~g 60 (227)
T 3tql_A 3 TIKFATE--ATYPPYVYM-----GPSGQVEGFGADIVKAVCK----QMQAVC--TISNQ---------PWDSLIPSLKLG 60 (227)
T ss_dssp EEEEEEC--SCBTTTBEE-----C--CCEESHHHHHHHHHHH----HTTCEE--EEEEC---------CHHHHHHHHHHT
T ss_pred eEEEEEc--CCCCCeeEE-----CCCCCcccchHHHHHHHHH----HhCCeE--EEEeC---------CHHHHHHHHhCC
Confidence 7899996 457778776 6788999999999999999 999654 55554 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+++|.+.+.||.||+....+++++++...
T Consensus 61 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~---------------------------------------- 100 (227)
T 3tql_A 61 KFDALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL---------------------------------------- 100 (227)
T ss_dssp SCSEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC----------------------------------------
T ss_pred CCCEEEecCcCCHhHHhheecccceeccceEEEEeCCCCC----------------------------------------
Confidence 9999988899999999999999999999999999987642
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCC-CceecCCCHHHHHHHHhcCCCCCCee
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSR-NQTRPLSNFGEYKEALSNGSRKGGVS 617 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~~~ 617 (753)
+++++|| +|+++|+..++....++.+ ..+. .++..+.+..+++.+|.+|+ +|
T Consensus 101 -------------------~~~~~dL--~g~~v~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~l~~gr----vD 153 (227)
T 3tql_A 101 -------------------TLSKQGL--KGKIIGVQGGTTFDSYLQD--SFGNSITIQRYPSEEDALMDLTSGR----VD 153 (227)
T ss_dssp -------------------CCSTTTT--TTCEEEEETTSHHHHHHHH--HHGGGSEEEEESSHHHHHHHHTTTS----SS
T ss_pred -------------------CCCHHHh--CCCEEEEEecccHHHHHHH--hccccceEEEcCCHHHHHHHHHcCC----cC
Confidence 4899999 5999999999999999886 3333 68888999999999999999 99
Q ss_pred EEEeccccHHHHHhcC-CCCcEEeCccccc-----CceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhc
Q 037761 618 AIFEEIPYIKVFLKKY-SSKYTTAGPIYRT-----DGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYF 685 (753)
Q Consensus 618 a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~-----~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~ 685 (753)
+++.+...+.+++++. ..++.+++..+.. .+++++++|++| +.+.||++|.+|+++| .++++.++|+
T Consensus 154 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~ 227 (227)
T 3tql_A 154 AVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKANG-VYAAIVQKYF 227 (227)
T ss_dssp EEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHHTS-HHHHHHHHHC
T ss_pred EEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHHHHHhCC-hHHHHHHhhC
Confidence 9999999999998887 3357777554433 355899999998 9999999999999999 9999999996
No 53
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.89 E-value=9.3e-23 Score=202.76 Aligned_cols=218 Identities=16% Similarity=0.268 Sum_probs=194.0
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.++||.+. +.+|++.|+++|+++.+++ ++|++++++ .. +|.+++.+|.+|
T Consensus 12 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~~~~~~--~~---------~~~~~~~~l~~g 69 (234)
T 3h7m_A 12 TIVVGGD--RDYPPYEFI-----DQNGKPAGYNVELTRAIAE----VMGMTVEFR--LG---------AWSEMFSALKSG 69 (234)
T ss_dssp CEEEEEE--TEETTTEEE-----CTTSCEESHHHHHHHHHHH----HHTCCEEEE--EE---------CGGGHHHHHHTT
T ss_pred EEEEEec--CCCCCeEEE-----CCCCCEeeeEHHHHHHHHH----HcCCceEEE--eC---------CHHHHHHHHhCC
Confidence 8999985 667788876 6789999999999999999 999765554 43 789999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++ .++..+++|.+.+.||.||+....++++++... .
T Consensus 70 ~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-~--------------------------------------- 108 (234)
T 3h7m_A 70 RVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSP-P--------------------------------------- 108 (234)
T ss_dssp SSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSC-C---------------------------------------
T ss_pred CeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCC-C---------------------------------------
Confidence 99996 688999999999999999999999999998754 2
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
+++++|| .|+++|+..++....++.+ ..+..++..+.+..+++.+|.+|+ +|+
T Consensus 109 -------------------~~~~~dL--~g~~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~g~----vDa 161 (234)
T 3h7m_A 109 -------------------AAGLEDL--RGRKVALHRDGIMHEYLAE--RGYGKDLVLTPTPADALRLLAAGG----CDY 161 (234)
T ss_dssp -------------------CSSGGGG--TTSCEEEETTSHHHHHHHT--TTCGGGEEEESSHHHHHHHHHTTS----SSE
T ss_pred -------------------CCCHHHh--CCCEEEEEeCchHHHHHHh--cCCCceEEEeCCHHHHHHHHHcCC----ceE
Confidence 8999999 5999999999999999885 445578888999999999999999 999
Q ss_pred EEeccccHHHHHhcC-CCCcEEeCcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 619 IFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
++.+...+.+++++. ..++.++...+...+++++++|+++ +++.||++|.+|+++| .++++.++|++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~ 231 (234)
T 3h7m_A 162 AVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTG-QYEAIRAKWLGV 231 (234)
T ss_dssp EEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHT-HHHHHHHHSTTC
T ss_pred EEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcC-cHHHHHHHhccc
Confidence 999999999998876 4478888877788889999999998 9999999999999999 999999999975
No 54
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.89 E-value=6.4e-23 Score=208.60 Aligned_cols=218 Identities=16% Similarity=0.285 Sum_probs=190.5
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.|+||.+. +++|++.|+++|+++.+++ ++|++++++..+ +|.+++.+|++|
T Consensus 33 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~lg~~~~~~~~~----------~~~~~~~~l~~G 91 (267)
T 3mpk_A 33 VVKVAVL--NLFAPFTLF-----RTDEQFGGISAAVLQLLQL----RTGLDFEIIGVD----------TVEELIAKLRSG 91 (267)
T ss_dssp EEEEEEE--TEETTTEEC-----CTTCCCBSHHHHHHHHHHH----HHCCEEEEEEES----------SHHHHHHHHHHT
T ss_pred cEEEEeC--CCCCCeEEE-----CCCCcEeeeHHHHHHHHHH----HHCCeEEEEecC----------CHHHHHHHHHCC
Confidence 8999996 567788876 6789999999999999999 999655554332 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|+++ +++.+++|.+.+.||.||+....++++++...
T Consensus 92 ~~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~----------------------------------------- 129 (267)
T 3mpk_A 92 EADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPD----------------------------------------- 129 (267)
T ss_dssp SCSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTT-----------------------------------------
T ss_pred CccEEe-cccCChhhhcceEechhhccCceEEEEECCCC-----------------------------------------
Confidence 999975 89999999999999999999999999998743
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
.|++++|| .|+++|+..++....++.+ ..+..++..+++.++++.+|.+|+ +|+
T Consensus 130 ------------------~i~~~~dL--~g~~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~l~~L~~Gr----vDa 183 (267)
T 3mpk_A 130 ------------------APVDADHL--DGRTVALVRNSAAIPLLQR--RYPQAKVVTADNPSEAMLMVANGQ----ADA 183 (267)
T ss_dssp ------------------SCSSGGGC--TTCEEEEETTCTHHHHHHH--HCTTSEEEEESSHHHHHHHHHHTS----CSE
T ss_pred ------------------CCCCHHHH--CCCEEEEeCCchhHHHHHH--hCCCcEEEEeCCHHHHHHHHHcCC----CCE
Confidence 38999999 5999999999999999986 556788899999999999999999 999
Q ss_pred EEeccccHHHHHhcC-CCCcEEeCccc-ccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 619 IFEEIPYIKVFLKKY-SSKYTTAGPIY-RTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
++.+...+.+++++. ..++.+..... ...+++++++|++| |.+.||++|.+|.++| ++++.+||+..
T Consensus 184 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~--~~~i~~kw~~~ 253 (267)
T 3mpk_A 184 VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE--LASIISRWRGS 253 (267)
T ss_dssp EEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH--HHHHHHTTC--
T ss_pred EEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH--HHHHHHhhccC
Confidence 999999999998875 44687776643 46788999999999 9999999999999999 99999999986
No 55
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.89 E-value=1.1e-22 Score=206.70 Aligned_cols=239 Identities=21% Similarity=0.300 Sum_probs=183.7
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCC--CCCChHHHHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGE--MAGTYDELLYQIK 456 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 456 (753)
+|+|++... +||.+.+.+..+..|++.|+++||+++|++ ++|++++++..+. ..+|. .+.+|.+++.+|.
T Consensus 4 ~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~----~lg~~~~~~~~~~-~~~g~~~~~~~~~~~~~~l~ 75 (265)
T 2v3u_A 4 VLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSN----YLGFNYEIYVAPD-HKYGSPQEDGTWNGLVGELV 75 (265)
T ss_dssp EEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHH----HHTCEEEEEECTT-CCCCCBCTTSCBCHHHHHHH
T ss_pred EEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHH----HcCCcEEEEEccC-CcccccCCCCCcchHHHHHH
Confidence 799999755 455555222112238999999999999999 9997666655432 12333 3568999999999
Q ss_pred cCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHH
Q 037761 457 LKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFI 536 (753)
Q Consensus 457 ~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lv 536 (753)
+|++|++++++++|++|.+.++||.||+..+.+++++++..
T Consensus 76 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~--------------------------------------- 116 (265)
T 2v3u_A 76 FKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS--------------------------------------- 116 (265)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC---------------------------------------
T ss_pred cCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCC---------------------------------------
Confidence 99999998889999999999999999999999999997753
Q ss_pred hhhceeeeeeeeEEeeccCCCcCChhHhhhc-CCeEEEecCchHHHHHHHhhCCCC------------------CceecC
Q 037761 537 LMQSYTASLSSILTVDQLEPTFADLKKLRTE-SHFVGFQSGSFVEDFLVKQLNFSR------------------NQTRPL 597 (753)
Q Consensus 537 l~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 597 (753)
|++++||.++ +...|...+.....++.+. +... .++..+
T Consensus 117 ---------------------i~~~~dL~~~v~v~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 174 (265)
T 2v3u_A 117 ---------------------IQSLQDLSKQTDIPYGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNV 174 (265)
T ss_dssp ---------------------CCSHHHHHTCSSSCEECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCB
T ss_pred ---------------------ccchhhhhhhhcEEEEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCccccc
Confidence 8999999611 2234545556666666632 2211 123467
Q ss_pred CCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcC-CCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchH
Q 037761 598 SNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTR 676 (753)
Q Consensus 598 ~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~ 676 (753)
.+..+++++|.+|+ + +++.+...+.+++++. ..++.+++..+...+++++++|++||++.||++|.+|+++| .
T Consensus 175 ~~~~~~~~~l~~G~----~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g-~ 248 (265)
T 2v3u_A 175 LESQAGIQKVKYGN----Y-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSG-D 248 (265)
T ss_dssp SSHHHHHHHHHHSS----C-EEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHT-H
T ss_pred CCHHHHHHHHHcCC----E-EEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCC-h
Confidence 88999999999999 8 8899988888888765 22788888877778899999999999999999999999999 9
Q ss_pred HHHHHHhhcCCCCCCC
Q 037761 677 MDRIEKKYFGENVMTP 692 (753)
Q Consensus 677 ~~~~~~~~~~~~~~~~ 692 (753)
+++|.++|+.....|.
T Consensus 249 ~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 249 MDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHHHHHHHCCCCCC--
T ss_pred HHHHHhhcCCCcCcCC
Confidence 9999999999888885
No 56
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.89 E-value=1.2e-22 Score=206.21 Aligned_cols=237 Identities=16% Similarity=0.285 Sum_probs=185.9
Q ss_pred ceEEeeccCCCCcceEEEEEc--CCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCC--CCC-ChHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVRED--GDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGE--MAG-TYDELLY 453 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~--~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 453 (753)
+|+|++.. ++||.+.+++ ..+++|++.|+++||+++|++ ++|++++++..+. ..+|. .++ +|.+++.
T Consensus 5 ~l~v~~~~---~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~----~lg~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 76 (263)
T 1mqi_A 5 TVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAK----HCGFKYKLTIVGD-GKYGARDADTKIWNGMVG 76 (263)
T ss_dssp CEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHH----HHTCCEEEEECTT-CCCCCBCTTTCCBCHHHH
T ss_pred EEEEEEec---CCCcEEEecCcccccCCCceeeeHHHHHHHHHH----HcCceEEEEEccc-cccCccCCCCCCcHHHHH
Confidence 79999964 5666665100 001258999999999999999 9997665554431 12332 222 7999999
Q ss_pred HHHcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHH
Q 037761 454 QIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWL 533 (753)
Q Consensus 454 ~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~ 533 (753)
+|++|++|++++++++|++|.+.++||.||+..+.+++++++.+
T Consensus 77 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------ 120 (263)
T 1mqi_A 77 ELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP------------------------------------ 120 (263)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS------------------------------------
T ss_pred HHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccc------------------------------------
Confidence 99999999998889999999999999999999999999998753
Q ss_pred HHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCe---EEEecCchHHHHHHHhhCCC-----------CCceecCCC
Q 037761 534 AFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHF---VGFQSGSFVEDFLVKQLNFS-----------RNQTRPLSN 599 (753)
Q Consensus 534 ~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 599 (753)
|++++||. |++ +|+..+.+...++.+. ..+ ..++..+.+
T Consensus 121 ------------------------i~~~~dL~--g~~~~~ig~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T 1mqi_A 121 ------------------------IESAEDLS--KQTEIAYGTLDSGSTKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRT 173 (263)
T ss_dssp ------------------------CCSHHHHH--TCSSSEEECBSSSHHHHHHHHC-CSHHHHHHHHHHHHCSSCCCBSS
T ss_pred ------------------------cCCHHHHh--cccCeeEEEEeccHHHHHHHhc-cchhHHHHHHHHhhCCCceecCC
Confidence 88999995 776 5755444444455421 111 124667889
Q ss_pred HHHHHHHH--hcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHH
Q 037761 600 FGEYKEAL--SNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRM 677 (753)
Q Consensus 600 ~~~~~~~l--~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~ 677 (753)
..+++.+| ..|+ |+++.+...+.++.++...++.+++..+...+++++++|+++|++.||++|.+|+++| .+
T Consensus 174 ~~~~~~~l~~~~g~-----da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g-~~ 247 (263)
T 1mqi_A 174 TAEGVARVRKSKGK-----YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQG-LL 247 (263)
T ss_dssp HHHHHHHHHHTTTS-----EEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHhhcCCc-----EEEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcc-cH
Confidence 99999999 8886 6899998888888877632677787777778899999999899999999999999999 99
Q ss_pred HHHHHhhcCCCCCCC
Q 037761 678 DRIEKKYFGENVMTP 692 (753)
Q Consensus 678 ~~~~~~~~~~~~~~~ 692 (753)
++|.+||+.....|+
T Consensus 248 ~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 248 DKLKNKWWYDKGECG 262 (263)
T ss_dssp HHHHHHHHTTTCSCC
T ss_pred HHHHHHHcCCCCCCC
Confidence 999999999888886
No 57
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.89 E-value=2.4e-22 Score=198.53 Aligned_cols=219 Identities=24% Similarity=0.423 Sum_probs=191.2
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.++||.+. + +|++.|+++|+++.+++ ++|+++++ ... +|.+++.+|.+|
T Consensus 4 ~l~v~~~--~~~~P~~~~-----~-~g~~~G~~~dl~~~~~~----~~g~~~~~--~~~---------~~~~~~~~l~~g 60 (226)
T 1wdn_A 4 KLVVATD--TAFVPFEFK-----Q-GDLYVGFDVDLWAAIAK----ELKLDYEL--KPM---------DFSGIIPALQTK 60 (226)
T ss_dssp CEEEEEE--SSBTTTBEE-----E-TTEEESHHHHHHHHHHH----HHTCCEEE--EEE---------CGGGHHHHHHTT
T ss_pred eEEEEEC--CCCCCeeEe-----c-CCcEEEeeHHHHHHHHH----HhCCEEEE--EEC---------CHHHHHHHHhCC
Confidence 7899997 567777775 3 38999999999999999 99865554 444 689999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+++|.+.+.|+.||+....++++++.++ .
T Consensus 61 ~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~-~--------------------------------------- 100 (226)
T 1wdn_A 61 NVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN-D--------------------------------------- 100 (226)
T ss_dssp SSSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCC-S---------------------------------------
T ss_pred CCCEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCC-C---------------------------------------
Confidence 999998888889999999999999999999999998753 2
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
+++++|| .|+++++..++....++.+ ..+..++..+.+..+++.+|.+|+ +|+
T Consensus 101 -------------------i~~~~dL--~g~~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~g~----vDa 153 (226)
T 1wdn_A 101 -------------------VKSVKDL--DGKVVAVKSGTGSVDYAKA--NIKTKDLRQFPNIDNAYMELGTNR----ADA 153 (226)
T ss_dssp -------------------CSSSTTT--TTCEEEEETTSHHHHHHHH--HCCCSEEEEESSHHHHHHHHHTTS----CSE
T ss_pred -------------------CCCHHHh--CCCEEEEEcCCcHHHHHHH--hCCCceEEEeCCHHHHHHHHHcCC----cCE
Confidence 8999999 5999999999999998885 345667888899999999999999 999
Q ss_pred EEeccccHHHHHhcC-CCCcEEeCcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 619 IFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
++.+...+.+++++. ..++.+++......+++++++|+++ +.+.+|++|.+|.++| .++++.++|+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g-~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 154 VLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENG-TYNEIYKKWFGTE 224 (226)
T ss_dssp EEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTS-HHHHHHHHHHSSC
T ss_pred EEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCCC
Confidence 999999999988877 3478887776677789999999987 9999999999999999 9999999999864
No 58
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.89 E-value=3.8e-22 Score=198.15 Aligned_cols=221 Identities=18% Similarity=0.292 Sum_probs=187.1
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+.. ++||.+.+ + +.+|++.|+++|+++.+++ ++|++++++.. .+|.+++.+|.+|
T Consensus 5 ~l~v~~~~---~~P~~~~~--~-~~~g~~~G~~~dl~~~i~~----~~g~~~~~~~~----------~~~~~~~~~l~~g 64 (233)
T 1ii5_A 5 ALKVGVVG---NPPFVFYG--E-GKNAAFTGISLDVWRAVAE----SQKWNSEYVRQ----------NSISAGITAVAEG 64 (233)
T ss_dssp CEEEEECC---CTTTCEEC--------CEESHHHHHHHHHHH----HHTCCEEEEEC----------SCHHHHHHHHHTT
T ss_pred eEEEEecC---CCCeEEEe--c-CCCCCEEEEeHHHHHHHHH----HcCCcEEEEEe----------CCHHHHHHHHHCC
Confidence 79999963 56666641 0 2468899999999999999 99965555444 2799999999999
Q ss_pred cccEEEeeeeeecccc--eeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHH
Q 037761 459 KFDAVVGDISIVASRT--DYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFI 536 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~--~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lv 536 (753)
++|++++++..+.+|. +.+.||.||+....++++++.+...
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~------------------------------------- 107 (233)
T 1ii5_A 65 ELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPL------------------------------------- 107 (233)
T ss_dssp SCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTT-------------------------------------
T ss_pred CcCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCCC-------------------------------------
Confidence 9999988888999998 9999999999999999999886422
Q ss_pred hhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCe
Q 037761 537 LMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGV 616 (753)
Q Consensus 537 l~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 616 (753)
|++++|| .|+++|+..++....++.+ . ..++..+.+..+++.+|.+|+ +
T Consensus 108 ---------------------i~~~~dL--~g~~v~~~~g~~~~~~l~~-~---~~~~~~~~~~~~~~~~l~~g~----v 156 (233)
T 1ii5_A 108 ---------------------FRSVGDL--KNKEVAVVRDTTAVDWANF-Y---QADVRETNNLTAAITLLQKKQ----V 156 (233)
T ss_dssp ---------------------CSSGGGG--TTCEEEEETTSHHHHHHHH-T---TCEEEEESSHHHHHHHHHTTS----C
T ss_pred ---------------------CCCHHHh--CCCeEEEECCccHHHHHHH-c---CCCeEEcCCHHHHHHHHHcCC----c
Confidence 8999999 5999999999999998885 2 457788899999999999999 9
Q ss_pred eEEEeccccHHHHHhcC-CCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 617 SAIFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 617 ~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
|+++.+...+.+++++. ..++.+++..+...+++++++|+++|.+.+|++|..|+++| .++++.+||+...
T Consensus 157 Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g-~~~~i~~k~~~~~ 228 (233)
T 1ii5_A 157 EAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSR-VIAEFTERWLGPG 228 (233)
T ss_dssp SEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTT-HHHHHHHHHHC--
T ss_pred cEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHHHHhCC-cHHHHHHHHcCCC
Confidence 99999999999988876 33788887777777899999999999999999999999999 9999999999863
No 59
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.89 E-value=2.3e-22 Score=200.71 Aligned_cols=222 Identities=24% Similarity=0.379 Sum_probs=186.8
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+. +.|+||.+. +.+|++.|+++|+++.+++ ++|++ +++... +|.+++.+|.+|
T Consensus 5 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~~--~~~~~~---------~~~~~~~~l~~g 62 (239)
T 1lst_A 5 TVRIGTD--TTYAPFSSK-----DAKGEFIGFDIDLGNEMCK----RMQVK--CTWVAS---------DFDALIPSLKAK 62 (239)
T ss_dssp EEEEEEC--SCBTTTBEE-----CTTCCEESHHHHHHHHHHH----HHTCE--EEEEEC---------CGGGHHHHHHTT
T ss_pred eEEEEEC--CCcCCeeEE-----CCCCCEeeEHHHHHHHHHH----HHCCe--EEEEeC---------CHHHHHHHHhCC
Confidence 7999995 667778776 6678999999999999999 99865 555554 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|+++++++.+++|.+.+.||.||+....++++++.++.
T Consensus 63 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~---------------------------------------- 102 (239)
T 1lst_A 63 KIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI---------------------------------------- 102 (239)
T ss_dssp SCSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC----------------------------------------
T ss_pred CCCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCC----------------------------------------
Confidence 9999988889999999999999999999999999987541
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
..+++|| .|+++|+..++....++.+....+..++..+.+..+++.+|.+|+ +|+
T Consensus 103 -------------------~~~~~dL--~g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa 157 (239)
T 1lst_A 103 -------------------QPTLESL--KGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDA 157 (239)
T ss_dssp -------------------CSSHHHH--TTCEEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSE
T ss_pred -------------------CCCHHHh--CCCEEEEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC----CCE
Confidence 2599999 599999999999998888532223457788899999999999999 999
Q ss_pred EEeccccHHH-HHhcC-CCCcEEeCccccc-----CceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 619 IFEEIPYIKV-FLKKY-SSKYTTAGPIYRT-----DGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 619 ~~~~~~~~~~-~~~~~-~~~l~~~~~~~~~-----~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
++.+...+.+ ++.+. ..++.+++..+.. .+++++++|+++ |.+.||++|.+|+++| .++++.++|+..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G-~~~~i~~k~~~~~ 234 (239)
T 1lst_A 158 ALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDG-TYDKMAKKYFDFN 234 (239)
T ss_dssp EEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTT-HHHHHHHTTCSSC
T ss_pred EEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHHHHHHHHHHHHHCc-cHHHHHHHHcCCC
Confidence 9999888764 45544 3357777654433 368899999998 9999999999999999 9999999999863
No 60
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.88 E-value=6.1e-22 Score=196.15 Aligned_cols=215 Identities=21% Similarity=0.394 Sum_probs=188.2
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+|++. +.|+||.+. +.+|++.|+++|+++.+++ ++|++ +++... +|.+++.+|.+|
T Consensus 7 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~~--~~~~~~---------~~~~~~~~l~~g 64 (229)
T 2y7i_A 7 TLHFGTS--ATYAPYEFV-----DADNKIVGFDIDVANAVCK----EMQAE--CSFTNQ---------SFDSLIPSLRFK 64 (229)
T ss_dssp EEEEEEC--CCBTTTBEE-----CTTSCEESHHHHHHHHHHH----HTTCE--EEEEEC---------CGGGHHHHHHTT
T ss_pred cEEEEeC--CCcCCceEE-----CCCCCCcceeHHHHHHHHH----HhCCe--EEEEEc---------CHHHHHHHHhCC
Confidence 7999996 667788776 5678999999999999999 99965 455554 799999999999
Q ss_pred cccEEEeeeeeecccceeeecccccccc-ceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSES-GVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFIL 537 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~-~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl 537 (753)
++|++++++..+++|.+.+.|+.||+.. ..++++++.+
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 103 (229)
T 2y7i_A 65 KFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA----------------------------------------- 103 (229)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS-----------------------------------------
T ss_pred CceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC-----------------------------------------
Confidence 9999987888999999999999999999 9999999763
Q ss_pred hhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCee
Q 037761 538 MQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVS 617 (753)
Q Consensus 538 ~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 617 (753)
+++++|| .|+++|+..++....++.+ ..+..++..+.+..+++.+|.+|+ +|
T Consensus 104 --------------------~~~~~dL--~g~~v~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~gr----vD 155 (229)
T 2y7i_A 104 --------------------YHTFADL--KGKKVGLENGTTHQRYLQD--KQQAITPVAYDSYLNAFTDLKNNR----LE 155 (229)
T ss_dssp --------------------CCSTGGG--TTCEEEEETTSHHHHHHHH--HCTTSEEEEESCHHHHHHHHHTTS----CS
T ss_pred --------------------CCCHHHH--CCCEEEEecCCcHHHHHHH--hCCCCeEEecCCHHHHHHHHHcCC----cC
Confidence 6789999 5999999999999998885 345678888899999999999999 99
Q ss_pred EEEeccccHHHHHhcCCCCcEEeCccccc-----CceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcC
Q 037761 618 AIFEEIPYIKVFLKKYSSKYTTAGPIYRT-----DGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFG 686 (753)
Q Consensus 618 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~ 686 (753)
+++.+...+.+++++.. ++.++...+.. .+++++++|+++ +.+.||++|.+|.++| .++++.+||++
T Consensus 156 a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~ 228 (229)
T 2y7i_A 156 GVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASP-EYAQMQEKWFT 228 (229)
T ss_dssp EEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHHTSH-HHHHHHHHHHC
T ss_pred EEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcC
Confidence 99999999999988876 68877655432 378899999998 9999999999999999 99999999986
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.88 E-value=4.3e-22 Score=201.52 Aligned_cols=219 Identities=20% Similarity=0.319 Sum_probs=190.9
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+++|++. +.|+||.+. +.+|++.|+++|+++.+++ ++|+ +++++.. +|.+++.+|.+|
T Consensus 30 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~--~~~~~~~---------~~~~~~~~l~~g 87 (259)
T 4dz1_A 30 TLNVAVS--PASPPMLFK-----SADGKLQGIDLELFSSYCQ----SRHC--KLNITEY---------AWDGMLGAVASG 87 (259)
T ss_dssp EEEEEEC--CCBTTTBEE-----CTTCCEESHHHHHHHHHHH----HHTC--EEEEEEC---------CHHHHHHHHHHT
T ss_pred eEEEEEC--CCCCCeEEE-----CCCCCEEEeHHHHHHHHHH----HhCC--eEEEEEc---------CHHHHHHHHhCC
Confidence 7999996 667788776 6688999999999999999 9995 5556665 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|+++++++.+++|.+.+.||.||+....++++++++...
T Consensus 88 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 128 (259)
T 4dz1_A 88 QADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKIT--------------------------------------- 128 (259)
T ss_dssp SSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCCC---------------------------------------
T ss_pred CCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCCC---------------------------------------
Confidence 99998889999999999999999999999999999875533
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCC------CceecCCCHHHHHHHHhcCCC
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSR------NQTRPLSNFGEYKEALSNGSR 612 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~g~~ 612 (753)
|++++|| +|+++|+..|+....++.+ ..+. .++..+.+.++++.+|.+|+
T Consensus 129 -------------------i~~~~dL--~g~~v~v~~g~~~~~~l~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~- 184 (259)
T 4dz1_A 129 -------------------LNNLNEL--NKYSIGYPRGMAYSDLIKN--DLEPKGYYSLSKVKLYPTYNETMADLKNGN- 184 (259)
T ss_dssp -------------------CCSGGGG--GGSCEEEETTSTHHHHHHH--HTGGGTSCCGGGCEEESSHHHHHHHHHHTS-
T ss_pred -------------------CCCHHHh--CCCEEEEeCCcHHHHHHHH--hcccccccccceeEecCCHHHHHHHHHcCC-
Confidence 9999999 5999999999999998885 2333 57788899999999999999
Q ss_pred CCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 613 KGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 613 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
+|+++.+...+.++.++...++..........+++++++|+++|++.||++|.+ ..++ .++++.++|+..
T Consensus 185 ---vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~-~l~~~~~~~~~~ 254 (259)
T 4dz1_A 185 ---LDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQ-KISGIVDSWMKH 254 (259)
T ss_dssp ---CSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH-HCHH-HHHHHHHHHTCC
T ss_pred ---CCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHHHHHHh-CCCe-ehHHHHHHHHhh
Confidence 999999999988887776436766666666778999999999999999999999 8888 999999999885
No 62
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.88 E-value=3.7e-22 Score=200.11 Aligned_cols=221 Identities=12% Similarity=0.191 Sum_probs=186.6
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcC-CccceEEEecCCCCCCCCCChHHHHHHHHc
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLG-MKIHPQLVPYEDENGEMAGTYDELLYQIKL 457 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (753)
+|+|++. ..|+||.+ ..+|++.|+++|+++.+++ ++| ++ +++... +|.+++.+|.+
T Consensus 9 ~l~v~~~--~~~~P~~~------~~~g~~~G~~~dl~~~i~~----~~g~~~--~~~~~~---------~~~~~~~~l~~ 65 (246)
T 4eq9_A 9 EIIVATN--GSPRPFIY------EENGELTGYEIEVVRAIFK----DSDKYD--VKFEKT---------EWSGVFAGLDA 65 (246)
T ss_dssp EEEEEEC--CCSTTTSE------EETTEEESHHHHHHHHHHT----TCSSEE--EEEEEC---------CHHHHHHHHHT
T ss_pred EEEEEeC--CCcCCeEE------cCCCCCcccHHHHHHHHHH----HcCCce--EEEEeC---------CHHHHHHHHhC
Confidence 7999997 45667766 2468899999999999999 998 65 455554 79999999999
Q ss_pred CcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHh
Q 037761 458 KKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFIL 537 (753)
Q Consensus 458 ~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl 537 (753)
|++|++++++..+++|.+.+.||.||+....++++++...
T Consensus 66 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 105 (246)
T 4eq9_A 66 DRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDS---------------------------------------- 105 (246)
T ss_dssp TSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCC----------------------------------------
T ss_pred CCcCEEecccccChhhhhceeeccceecCceEEEEECCCC----------------------------------------
Confidence 9999998888999999999999999999999999998332
Q ss_pred hhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhh-CCCC--Ccee-cCCCHHHHHHHHhcCCCC
Q 037761 538 MQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQL-NFSR--NQTR-PLSNFGEYKEALSNGSRK 613 (753)
Q Consensus 538 ~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~l~~g~~~ 613 (753)
.|++++|| .|+++|+..++....++.+.. ..+. .++. ...+..+++.+|.+|+
T Consensus 106 -------------------~i~~~~dL--~g~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~-- 162 (246)
T 4eq9_A 106 -------------------SIKSLDDI--GGKSTEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ-- 162 (246)
T ss_dssp -------------------SCSSGGGC--TTCEEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS--
T ss_pred -------------------CCCCHHHh--CCCEEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC--
Confidence 28999999 599999999999988887411 1222 3343 2358899999999999
Q ss_pred CCeeEEEeccccHHHHHhcC-CCCcEEeCcccccCc-eEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 614 GGVSAIFEEIPYIKVFLKKY-SSKYTTAGPIYRTDG-LGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 614 ~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
+|+++.+...+.+++++. ..++.++.......+ ++++++|++| |++.||++|.+|+++| .+++|.++|++..
T Consensus 163 --vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g-~~~~i~~k~~~~~ 237 (246)
T 4eq9_A 163 --FDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDG-TLEKLSKQFFGDT 237 (246)
T ss_dssp --SSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHSSC
T ss_pred --ceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCC-cHHHHHHHhcCCC
Confidence 999999999999998877 346888877666665 8899999998 9999999999999999 9999999999873
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.87 E-value=5.7e-22 Score=202.05 Aligned_cols=216 Identities=17% Similarity=0.247 Sum_probs=184.4
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCc---ceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNK---TTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQI 455 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 455 (753)
+|+|++. +.|+||.+. +.+ |++.|+++|+++++++ ++|++ ++++.. +|.+++.+|
T Consensus 22 ~l~v~~~--~~~pP~~~~-----~~~~~~g~~~G~~~dl~~~i~~----~~g~~--v~~~~~---------~~~~~~~~l 79 (271)
T 2iee_A 22 KIVVATS--GTLYPTSYH-----DTDSGSDKLTGYEVEVVREAAK----RLGLK--VEFKEM---------GIDGMLTAV 79 (271)
T ss_dssp EEEEEEC--SCBTTTBEE-----ETTTTCCEEECHHHHHHHHHHH----HTTCE--EEEEEC---------CSTTHHHHH
T ss_pred eEEEEEC--CCCCCeeEe-----CCCCCCCCceeeHHHHHHHHHH----HcCCe--EEEEEC---------CHHHHHHHH
Confidence 8999996 567777775 344 8999999999999999 99965 555554 689999999
Q ss_pred HcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHH
Q 037761 456 KLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAF 535 (753)
Q Consensus 456 ~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~l 535 (753)
.+|++|+++++++.+++|.+.+.||.||+....++++++.....
T Consensus 80 ~~G~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~------------------------------------ 123 (271)
T 2iee_A 80 NSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSG------------------------------------ 123 (271)
T ss_dssp HHTSSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGG------------------------------------
T ss_pred HCCCcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCCC------------------------------------
Confidence 99999999888889999999999999999999999999875322
Q ss_pred HhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHH--HHHHhcCCCC
Q 037761 536 ILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEY--KEALSNGSRK 613 (753)
Q Consensus 536 vl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~ 613 (753)
|++++|| .|+++|+..++....++++ . + .++..+.+..++ +.+|.+|+
T Consensus 124 ----------------------i~~~~dL--~g~~i~v~~g~~~~~~l~~-~--~-~~~~~~~~~~~~~l~~~L~~Gr-- 173 (271)
T 2iee_A 124 ----------------------IKTLKDL--KGKKAAGAATTVYMEVARK-Y--G-AKEVIYDNATNEQYLKDVANGR-- 173 (271)
T ss_dssp ----------------------CSSGGGG--TTCEEESCTTSHHHHHHHH-T--T-CEEEECSSCCHHHHHHHHHHTS--
T ss_pred ----------------------CCCHHHh--CCCEEEEeCCccHHHHHHH-c--C-CceEEeCChhhHHHHHHHHcCC--
Confidence 8999999 6999999999999998874 2 2 277888888888 99999999
Q ss_pred CCeeEEEeccccHHHHHh-cC-CCCcEEe-CcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcC
Q 037761 614 GGVSAIFEEIPYIKVFLK-KY-SSKYTTA-GPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFG 686 (753)
Q Consensus 614 ~~~~a~~~~~~~~~~~~~-~~-~~~l~~~-~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~ 686 (753)
+| ++.+...+.+++. +. ..++.++ ...+...+++++++|+++ |++.||++|.+|+++| .++++.+||+.
T Consensus 174 --vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G-~~~~i~~k~~~ 246 (271)
T 2iee_A 174 --TD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDG-SLTKLSKQFFN 246 (271)
T ss_dssp --SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHHT-HHHHHHHHHTT
T ss_pred --cc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHhCC
Confidence 99 7777777766665 44 3468877 666677788999999998 9999999999999999 99999999998
No 64
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.87 E-value=1.8e-21 Score=200.21 Aligned_cols=228 Identities=20% Similarity=0.247 Sum_probs=195.8
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCC-ccceEEEecCCCCCCCCCChHHHHHHHHc
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGM-KIHPQLVPYEDENGEMAGTYDELLYQIKL 457 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (753)
+|+||+. +.++||.+. +.+|++.|+++|+++.+++.|.+++|. .+++++++. +|.+++.+|.+
T Consensus 18 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~---------~~~~~~~~l~~ 81 (287)
T 2vha_A 18 VIVVGHR--ESSVPFSYY-----DNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI---------TSQNRIPLLQN 81 (287)
T ss_dssp EEEEEEC--SEETTTEEE-----CSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC---------CTTTHHHHHHT
T ss_pred eEEEEEc--CCCCCceEE-----CCCCCcccccHHHHHHHHHHHHHhcCCCCceEEEEEC---------CHHHHHHHHHC
Confidence 7999996 567788776 567899999999999999977667883 256667765 78999999999
Q ss_pred CcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHh
Q 037761 458 KKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFIL 537 (753)
Q Consensus 458 ~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl 537 (753)
|++|++++++..+.+|.+.+.||.||+....++++++..+
T Consensus 82 g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~---------------------------------------- 121 (287)
T 2vha_A 82 GTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGD---------------------------------------- 121 (287)
T ss_dssp TSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSS----------------------------------------
T ss_pred CCeeEEeccccCCcchhhcccccceeeecceEEEEECCCC----------------------------------------
Confidence 9999998788899999999999999999999999998753
Q ss_pred hhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhh--CCCCCceecCCCHHHHHHHHhcCCCCCC
Q 037761 538 MQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQL--NFSRNQTRPLSNFGEYKEALSNGSRKGG 615 (753)
Q Consensus 538 ~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 615 (753)
|++++|| .|+++|+..++....++.+.. .....+++.+.+..+++.+|.+|+
T Consensus 122 --------------------i~sl~dL--~g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~---- 175 (287)
T 2vha_A 122 --------------------IKDFADL--KGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR---- 175 (287)
T ss_dssp --------------------CCSGGGG--TTCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS----
T ss_pred --------------------CCCHHHc--CCCEEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC----
Confidence 8999999 599999999999888877422 123457788899999999999999
Q ss_pred eeEEEeccccHHHHHhcC--CCCcEEeCcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCCC
Q 037761 616 VSAIFEEIPYIKVFLKKY--SSKYTTAGPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGENV 689 (753)
Q Consensus 616 ~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~ 689 (753)
+|+++.+...+.+++++. ...+.+++..+...+++++++|+++ +.+.||++|.+|.++| .++++.++|+....
T Consensus 176 vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~~~ 251 (287)
T 2vha_A 176 AVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSG-EAEKWFDKWFKNPI 251 (287)
T ss_dssp CSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHSCB
T ss_pred eeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCc-hHHHHHHHHcCCCC
Confidence 999999999999988875 2468888877777789999999988 9999999999999999 99999999998743
No 65
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.86 E-value=4.3e-21 Score=195.13 Aligned_cols=219 Identities=24% Similarity=0.357 Sum_probs=189.8
Q ss_pred ceEEeeccCCCCcceEE---EEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLS---VREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQI 455 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 455 (753)
+++|++. +.|+||.+ . +++|++.|+++|+++.+++ ++|. +++++.. +|.+++.+|
T Consensus 40 ~l~v~~~--~~~~P~~~~~~~-----~~~g~~~G~~~dl~~~~~~----~~g~--~~~~~~~---------~~~~~~~~l 97 (269)
T 4i62_A 40 KLVVALN--PDFAPFEYQKVV-----DGKNQIVGSDIELAKAIAT----ELGV--ELELSPM---------SFDNVLASV 97 (269)
T ss_dssp EEEEEEC--SCBTTTBEEEEE-----TTEEEEESHHHHHHHHHHH----HHTC--EEEEEEC---------CHHHHHHHH
T ss_pred eEEEEec--CCCCCceeeccc-----CCCCcEeeecHHHHHHHHH----HHCC--ceEEEEc---------CHHHHHHHH
Confidence 7899986 56667766 5 7789999999999999999 9995 4555554 799999999
Q ss_pred HcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHH
Q 037761 456 KLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAF 535 (753)
Q Consensus 456 ~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~l 535 (753)
.+|++|++++++..+.+|.+.+.|+.||+....+++++++...
T Consensus 98 ~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------- 140 (269)
T 4i62_A 98 QSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLA------------------------------------- 140 (269)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTT-------------------------------------
T ss_pred hCCCccEEecCCcCCHhHhhceecccchhhcceEEEEECCccc-------------------------------------
Confidence 9999999988899999999999999999999999999988543
Q ss_pred HhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCC
Q 037761 536 ILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGG 615 (753)
Q Consensus 536 vl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 615 (753)
.|++++|| .|+++|+..++....++.+ ..+..++..+.+..+++.+|.+|+
T Consensus 141 ---------------------~i~~~~dL--~g~~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~g~---- 191 (269)
T 4i62_A 141 ---------------------TYQSVNDL--AQKKVGAQKGSIQETMAKD--LLQNSSLVSLPKNGNLITDLKSGQ---- 191 (269)
T ss_dssp ---------------------TCSSGGGG--C-CEEEEETTSHHHHHHHH--HCTTSEEEEESCHHHHHHHHHTTS----
T ss_pred ---------------------cccCHHHh--CCCeEEEecCchHHHHHHH--hCCCCcEEecCCHHHHHHHHHcCC----
Confidence 39999999 5999999999999999886 456678888999999999999999
Q ss_pred eeEEEeccccHHHHHhcCCCCcEEeCcccc---cCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 616 VSAIFEEIPYIKVFLKKYSSKYTTAGPIYR---TDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 616 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
+|+++.+...+.+++++.. .+.+....+. ..+++++++|++| +.+.||++|.+|+++| .++++.++|++.
T Consensus 192 vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~ 265 (269)
T 4i62_A 192 VDAVIFEEPVAKGFVENNP-DLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESG-ELDKLIEDAFKA 265 (269)
T ss_dssp SSEEEEEHHHHHHHHHHCT-TEEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCEEEeChHHHHHHHHhCC-CCeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHhCC
Confidence 9999999999999888764 4555444333 5678999999998 9999999999999999 999999999976
No 66
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.86 E-value=2.1e-21 Score=196.09 Aligned_cols=221 Identities=14% Similarity=0.193 Sum_probs=186.8
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+|++. .|+||.+. +.+|++.|+++|+++.+++ ++|++ ++++... +|.+++.+|.+|
T Consensus 14 ~l~v~~~---~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~~-~~~~~~~---------~~~~~~~~l~~g 71 (257)
T 2q88_A 14 FARIAIA---NEPPFTAV-----GADGKVSGAAPDVAREIFK----RLGVA-DVVASIS---------EYGAMIPGLQAG 71 (257)
T ss_dssp EEEEEEC---CCTTTCEE-----CTTCCEESHHHHHHHHHHH----HTTCC-EEEEEEC---------CGGGHHHHHHTT
T ss_pred eEEEEcC---CCCCeeEE-----CCCCCcccccHHHHHHHHH----HcCCC-eeeEEeC---------CHHHHHHHHHCC
Confidence 7999985 56677665 5678999999999999999 99965 2556655 799999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+.+|.+.+.||.||+....++++++.....
T Consensus 72 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~--------------------------------------- 112 (257)
T 2q88_A 72 RHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG--------------------------------------- 112 (257)
T ss_dssp SCSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTC---------------------------------------
T ss_pred CcCEEEecccCCHHHHhccccccchhcCceEEEEECCCccC---------------------------------------
Confidence 99999878899999999999999999999999999886433
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhc-CCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCee
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTE-SHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVS 617 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 617 (753)
|++++||..+ |+++|+..++....++.+ .+.+..++..+.+..+++.+|.+|+ +|
T Consensus 113 -------------------i~~~~dL~~~~g~~i~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~gr----vD 168 (257)
T 2q88_A 113 -------------------LKSYKDIADNPDAKIGAPGGGTEEKLALE-AGVPRDRVIVVPDGQSGLKMLQDGR----ID 168 (257)
T ss_dssp -------------------CCBHHHHHHCTTCCEEECTTSHHHHHHHH-TTCCGGGEEECSSHHHHHHHHHHTS----CS
T ss_pred -------------------CCCHHHHhccCCceEEEECCcccHHHHHh-cCCCCceEEEcCCHHHHHHHHHcCC----Cc
Confidence 8999999533 899999999999998884 4456678888999999999999999 99
Q ss_pred EEEeccccHHHHHhcCC-CCcEEeCcccc--cCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhc
Q 037761 618 AIFEEIPYIKVFLKKYS-SKYTTAGPIYR--TDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYF 685 (753)
Q Consensus 618 a~~~~~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~ 685 (753)
+++.+...+.+++++.. ..+....+... ..+++++++|+++ |.+.||++|.+|.++| .++++.++|.
T Consensus 169 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~g-~~~~i~~k~~ 239 (257)
T 2q88_A 169 VYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESG-EFAKIIEPYG 239 (257)
T ss_dssp EEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHT-HHHHHHGGGT
T ss_pred EEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHHHHHHHHHHHHHHhCC-cHHHHHHHhC
Confidence 99999999999888763 34555443211 2357789999987 9999999999999999 9999999994
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.86 E-value=3.7e-21 Score=190.25 Aligned_cols=220 Identities=23% Similarity=0.386 Sum_probs=183.2
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+||+.. ++||.+ ..+|++.|+++|+++.+++ ++|++++++..+ +|.+++.+|.+|
T Consensus 4 ~l~v~~~~---~~P~~~------~~~g~~~G~~~dl~~~~~~----~~g~~~~~~~~~----------~~~~~~~~l~~g 60 (228)
T 2pyy_A 4 PLLVATRV---IPPFVL------SNKGELSGFSIDLWRSIAT----QIGIESKLIEYS----------SVPELISAIKDN 60 (228)
T ss_dssp CEEEEECC---BTTTBB------CC---CBSHHHHHHHHHHH----HHTCCEEEEECS----------SHHHHHHHHHTT
T ss_pred eEEEEecC---CCCeEE------ecCCceEEEeHHHHHHHHH----HhCCcEEEEEcC----------CHHHHHHHHHCC
Confidence 78999963 556655 3467899999999999999 999766555443 689999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+.+|.+.+.|+.||+....+++++++++.
T Consensus 61 ~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~---------------------------------------- 100 (228)
T 2pyy_A 61 KVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESG---------------------------------------- 100 (228)
T ss_dssp SCSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC--------------------------------------------
T ss_pred CcCEEEeccccCHHHHccceecccchhcceEEEEECCccc----------------------------------------
Confidence 9999988888899999999999999999999999987531
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
...+++++|| .|+++|+..++....++.+ ...++..+.+..+++.+|.+|+ +|+
T Consensus 101 ----------------~~~~~~~~dL--~g~~i~~~~g~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~g~----~D~ 154 (228)
T 2pyy_A 101 ----------------TGDIRSIDDL--PGKVVATTAGSTAATYLRE----HHISVLEVPKIEEAYKALQTKK----ADA 154 (228)
T ss_dssp -----------------CCCCSGGGC--TTCEEEEETTSHHHHHHHH----TTCEEEEESSHHHHHHHHHTTS----SSE
T ss_pred ----------------cCCcCCHHHc--CCCeEEEEcCcHHHHHHHH----cCCceEecCCHHHHHHHHHcCC----CCE
Confidence 0138999999 5999999999999888884 2347778889999999999999 999
Q ss_pred EEeccccHHHHHhcC-CCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 619 IFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
++.+...+.+++++. ..++.+++..+...+++++++|++++.+.+|++|.+|+++| .++++.++|+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g-~~~~i~~k~~~~~ 224 (228)
T 2pyy_A 155 VVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENG-TYQSLYDKWFDPK 224 (228)
T ss_dssp EEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHHHTT-HHHHHHHHHHCC-
T ss_pred EEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHHhCC-cHHHHHHHHcCCc
Confidence 999999999988876 33677777666667889999999889999999999999999 9999999999863
No 68
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.85 E-value=1.2e-20 Score=192.45 Aligned_cols=219 Identities=22% Similarity=0.336 Sum_probs=188.5
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+|++. +.|+||.+. ++|++.|+++|+++.+++ ++|++ ++++.. .|.+++.+|.+|
T Consensus 43 ~l~v~~~--~~~~P~~~~------~~g~~~G~~~dl~~~i~~----~~g~~--v~~~~~---------~~~~~~~~l~~G 99 (272)
T 2pvu_A 43 KVVVGTD--AAFAPFEYM------QKGKIVGFDVDLLDAVMK----AAGLD--YELKNI---------GWDPLFASLQSK 99 (272)
T ss_dssp CEEEEEC--CCBTTTBEE------ETTEEESHHHHHHHHHHH----HHTCC--EEEEEC---------CHHHHHHHHHHT
T ss_pred eEEEEEC--CCCCCeEEe------cCCeEEEEHHHHHHHHHH----HhCCc--eEEEEC---------CHHHHHHHHhCC
Confidence 7999996 567777764 258899999999999999 99854 555555 699999999999
Q ss_pred cccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhh
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILM 538 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~ 538 (753)
++|++++++..+.+|.+.+.|+.||+....++++++..+
T Consensus 100 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~----------------------------------------- 138 (272)
T 2pvu_A 100 EVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP----------------------------------------- 138 (272)
T ss_dssp SSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCC-----------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCC-----------------------------------------
Confidence 999998788889999999999999999999999998753
Q ss_pred hceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeE
Q 037761 539 QSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSA 618 (753)
Q Consensus 539 ~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a 618 (753)
|++++|| .|+++|+..++....++.+... ...++..+.+..+++.+|.+|+ +|+
T Consensus 139 -------------------i~~~~dL--~g~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~----vDa 192 (272)
T 2pvu_A 139 -------------------VKNALDL--KGKTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGG----VDA 192 (272)
T ss_dssp -------------------CCSGGGG--TTSCEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTS----CSE
T ss_pred -------------------CCCHHHh--CCCeEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCC----ccE
Confidence 8899999 5999999999999988886433 3567788899999999999999 999
Q ss_pred EEeccccHHHHHhcC-CCCcEEeCccc--ccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 619 IFEEIPYIKVFLKKY-SSKYTTAGPIY--RTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~l~~~~~~~--~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
++.+...+.+++++. ..++.+++... ...+++++++|+..+.+.||++|..|.++| .++++.++|+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~~ 264 (272)
T 2pvu_A 193 VITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSG-KYTEIYKKWFGKE 264 (272)
T ss_dssp EEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTT-HHHHHHHHHHSSC
T ss_pred EEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCCC
Confidence 999999999988876 33588877654 556788999999339999999999999999 9999999999863
No 69
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.85 E-value=1.2e-20 Score=193.57 Aligned_cols=217 Identities=18% Similarity=0.285 Sum_probs=190.5
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|+|++. +.|+||.+. +.+|.+.|+.+|+++.+++ ++|+ +++++.. .|.+++.+|.+|
T Consensus 58 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~G~--~v~~~~~---------~~~~~~~~l~~G 115 (283)
T 2yln_A 58 TVTVGTE--GTYAPFTYH-----DKDGKLTGYDVEVTRAVAE----KLGV--KVEFKET---------QWDSMMAGLKAG 115 (283)
T ss_dssp EEEEEEC--SEETTTEEE-----CTTSCEESHHHHHHHHHHH----HHTC--EEEEEEC---------CGGGHHHHHHHT
T ss_pred eEEEEEC--CCCCCeeEE-----CCCCCEeeehHHHHHHHHH----HcCC--ceEEEEC---------CHHHHHHHHHCC
Confidence 7999996 457788876 5678999999999999999 9985 5556655 689999999999
Q ss_pred cccEEEeeeee-ecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHh
Q 037761 459 KFDAVVGDISI-VASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFIL 537 (753)
Q Consensus 459 ~~Di~~~~~~~-t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl 537 (753)
++|++++++.. +.+|.+.+.|+.||+.....+++++.+.
T Consensus 116 ~~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~---------------------------------------- 155 (283)
T 2yln_A 116 RFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN---------------------------------------- 155 (283)
T ss_dssp SCSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCS----------------------------------------
T ss_pred CcCEEEecCccCChhhhcceEeccCeeeecEEEEEECCCC----------------------------------------
Confidence 99999877887 8999999999999999999999998753
Q ss_pred hhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCee
Q 037761 538 MQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVS 617 (753)
Q Consensus 538 ~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 617 (753)
|++++|| .|+++++..++....++.+ . ..++..+.+..+++.+|.+|+ +|
T Consensus 156 --------------------i~s~~dL--~G~~v~v~~g~~~~~~l~~-~---~~~~~~~~~~~~~~~~l~~g~----vD 205 (283)
T 2yln_A 156 --------------------IKSIADI--KGVKTAQSLTSNYGEKAKA-A---GAQLVPVDGLAQSLTLIEQKR----AD 205 (283)
T ss_dssp --------------------CCSGGGC--TTSEEEECTTSHHHHHHHH-T---TCEEEECSSHHHHHHHHHTTS----CC
T ss_pred --------------------CCCHHHh--CCCEEEEecCchHHHHHHH-c---CCeEEEeCCHHHHHHHHHcCC----CC
Confidence 8999999 6999999999999888884 2 457788889999999999999 99
Q ss_pred EEEeccccHHHHHhcC-CCCcEEeC-cccc-cCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 618 AIFEEIPYIKVFLKKY-SSKYTTAG-PIYR-TDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 618 a~~~~~~~~~~~~~~~-~~~l~~~~-~~~~-~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
+++.+...+.+++++. ..++.+++ ..+. ..+++++++|+++ |.+.||+.|.+|+++| .++++.++|+..+
T Consensus 206 a~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g-~~~~i~~k~~~~~ 279 (283)
T 2yln_A 206 ATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADG-TLKKLGEQFFGKD 279 (283)
T ss_dssp EEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHSSC
T ss_pred EEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCC-cHHHHHHHHcCCC
Confidence 9999999999988876 33588887 6666 6788999999988 9999999999999999 9999999999864
No 70
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.85 E-value=2e-20 Score=189.99 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=191.8
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+++|++. +.++||.+. +.+|++.|+++|+++.+++ ++|+ +++++.. +|.+++.+|.+|
T Consensus 32 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~g~--~~~~~~~---------~~~~~~~~l~~g 89 (268)
T 3qax_A 32 IWIVGTN--ATYPPFEYV-----DAQGEVVGFDIDLAKAISE----KLGK--QLEVREF---------AFDALILNLKKH 89 (268)
T ss_dssp EEEEEEC--SCBTTTBEE-----CTTSCEESHHHHHHHHHHH----HHTC--EEEEEEC---------CGGGHHHHHHHT
T ss_pred eEEEEEC--CCCCCceEE-----CCCCCEEEEEHHHHHHHHH----HhCC--eEEEEec---------CHHHHHHHHhCC
Confidence 7899986 566777776 6789999999999999999 9995 5555554 789999999999
Q ss_pred cccEEEeeeeeecccceeeecccccc--ccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHH
Q 037761 459 KFDAVVGDISIVASRTDYVEFTLPYS--ESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFI 536 (753)
Q Consensus 459 ~~Di~~~~~~~t~~r~~~~~fs~p~~--~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lv 536 (753)
++|++++++..+++|.+.+.| .||+ ....++++++.+.
T Consensus 90 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~--------------------------------------- 129 (268)
T 3qax_A 90 RIDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSL--------------------------------------- 129 (268)
T ss_dssp SSSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTS---------------------------------------
T ss_pred CccEEeecCccCHhHhcceee-ecceecccceEEEEECCCC---------------------------------------
Confidence 999998889999999999999 9999 8889999998742
Q ss_pred hhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCe
Q 037761 537 LMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGV 616 (753)
Q Consensus 537 l~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 616 (753)
.|++++|| +|+++|+..++....++. ..+..++..+.+..+++.+|.+|+ +
T Consensus 130 --------------------~i~~~~dL--~g~~i~~~~g~~~~~~l~---~~~~~~~~~~~~~~~~~~~l~~G~----v 180 (268)
T 3qax_A 130 --------------------ETPVLPLT--QYSSVAVQTGTYQEHYLL---SQPGICVRSFDSTLEVIMEVRYGK----S 180 (268)
T ss_dssp --------------------CSCCCCGG--GSSCEEEETTSHHHHHHH---TSTTCCEEEESCHHHHHHHHHTTS----S
T ss_pred --------------------CCCCHHHh--CCCEEEEecCcHHHHHHH---hCCCceEEecCCHHHHHHHHHcCC----C
Confidence 38999999 599999999999999988 356678888999999999999999 9
Q ss_pred eEEEeccccHHHHHhcCCCCcEEeCcccccCc----eEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCCC
Q 037761 617 SAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDG----LGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGEN 688 (753)
Q Consensus 617 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~ 688 (753)
|+++.+...+.++.++.. .+.++...+...+ ++++++|+++ +++.||++|.++.++| .++++.++|+...
T Consensus 181 Da~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~~ 255 (268)
T 3qax_A 181 PVAVLEPSVGRVVLKDFP-NLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEG-VIQSLTKKWQLSE 255 (268)
T ss_dssp SEEEECHHHHHHHGGGCT-TEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTT-HHHHHHHHTTCSC
T ss_pred CEEEecHHHHHHHHHhCC-CcEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCC-cHHHHHHHHcCCc
Confidence 999999999999988875 4777777666666 9999999998 9999999999999999 9999999999864
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.85 E-value=8.5e-21 Score=195.65 Aligned_cols=217 Identities=16% Similarity=0.219 Sum_probs=190.6
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhc---CCccceEEEecCCCCCCCCCChHHHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKL---GMKIHPQLVPYEDENGEMAGTYDELLYQI 455 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 455 (753)
+++|++. +.++||.+. +.+|.+.|+++|+++.+++ ++ |++ +++... +|.+++.+|
T Consensus 45 ~l~v~~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~~~~g~~--~~~~~~---------~~~~~~~~l 102 (292)
T 1xt8_A 45 VVRIGVF--GDKPPFGYV-----DEKGNNQGYDIALAKRIAK----ELFGDENK--VQFVLV---------EAANRVEFL 102 (292)
T ss_dssp SEEEEEC--SEETTTEEE-----CTTSCEESHHHHHHHHHHH----HHHSCTTC--EEEEEC---------CGGGHHHHH
T ss_pred eEEEEEC--CCCCCeeEE-----CCCCCEeeEhHHHHHHHHH----HhccCCce--EEEEEc---------CHHHHHHHH
Confidence 7999986 567788876 6678999999999999999 99 965 455554 689999999
Q ss_pred HcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHH
Q 037761 456 KLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAF 535 (753)
Q Consensus 456 ~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~l 535 (753)
.+|++|++++++..+.+|.+.+.|+.||+....++++++.+.
T Consensus 103 ~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-------------------------------------- 144 (292)
T 1xt8_A 103 KSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN-------------------------------------- 144 (292)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCC--------------------------------------
T ss_pred hCCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCCC--------------------------------------
Confidence 999999998778889999999999999999999999998752
Q ss_pred HhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCC
Q 037761 536 ILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGG 615 (753)
Q Consensus 536 vl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 615 (753)
+++++|| .|+++|+..++....++.+ ..+..++..+.+..+++.+|.+|+
T Consensus 145 ----------------------i~~~~dL--~g~~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~L~~G~---- 194 (292)
T 1xt8_A 145 ----------------------ITSVEDL--KDKTLLLNKGTTADAYFTQ--NYPNIKTLKYDQNTETFAALMDKR---- 194 (292)
T ss_dssp ----------------------CCSSGGG--TTSEEEEETTSHHHHHHHH--HCTTSEEEEESSHHHHHHHHHTTS----
T ss_pred ----------------------CCCHHHh--CCCEEEEeCCCcHHHHHHH--hCCCceEEEcCCHHHHHHHHHcCC----
Confidence 8999999 5999999999999888885 345667888899999999999999
Q ss_pred eeEEEeccccHHHHHhcCCCCcEEeCcccccCce-EEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 616 VSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGL-GFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 616 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
+|+++.+...+.++.++.. ++.+++..+...++ +++++|+++ +.+.||+.|.+|.++| .++++.++|+..
T Consensus 195 vDa~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g-~~~~i~~k~~~~ 266 (292)
T 1xt8_A 195 GDALSHDNTLLFAWVKDHP-DFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQ-FFHKAYDETLKA 266 (292)
T ss_dssp SSEEEEEHHHHHHHHHHCT-TEEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTT-HHHHHHHHHTGG
T ss_pred ccEEEecHHHHHHHHHhCC-CeEEcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHhcCC
Confidence 9999999999999888775 47777766666777 899999998 9999999999999999 999999999985
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.85 E-value=1.1e-20 Score=194.48 Aligned_cols=217 Identities=17% Similarity=0.226 Sum_probs=191.0
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhc---CCccceEEEecCCCCCCCCCChHHHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKL---GMKIHPQLVPYEDENGEMAGTYDELLYQI 455 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 455 (753)
+|+||+. +.|+||.+. +.+|++.|+.+|+++.+++ ++ |+ +++++.. .|.+++.+|
T Consensus 56 ~l~vg~~--~~~~P~~~~-----~~~g~~~G~~~dl~~~i~~----~~~~~g~--~v~~~~~---------~~~~~~~~l 113 (291)
T 2yjp_A 56 VIRIGVF--GDKPPFGYV-----DANGKNQGFDVEIAKDLAK----DLLGSPD--KVEFVLT---------EAANRVEYV 113 (291)
T ss_dssp CEEEEEC--SEETTTEEE-----CTTSCEESHHHHHHHHHHH----HHHSCGG--GEEEEEC---------CGGGHHHHH
T ss_pred eEEEEEc--CCCCCceEE-----CCCCCEeehHHHHHHHHHH----HhccCCc--eEEEEEc---------cHHHHHHHH
Confidence 7999986 567788776 6788999999999999999 98 85 5555554 689999999
Q ss_pred HcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHH
Q 037761 456 KLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAF 535 (753)
Q Consensus 456 ~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~l 535 (753)
.+|++|++++++..+.+|.+.+.|+.||.....++++++.+.
T Consensus 114 ~~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~-------------------------------------- 155 (291)
T 2yjp_A 114 RSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKP-------------------------------------- 155 (291)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTSC--------------------------------------
T ss_pred hCCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCCC--------------------------------------
Confidence 999999998788889999999999999999999999998752
Q ss_pred HhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCC
Q 037761 536 ILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGG 615 (753)
Q Consensus 536 vl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 615 (753)
|++++|| .|+++|+..++....++.+ ..+..++..+.+..+++.+|.+|+
T Consensus 156 ----------------------i~sl~dL--~gk~v~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~G~---- 205 (291)
T 2yjp_A 156 ----------------------ITDMAQL--KDQTLLVNKGTTADAFFTK--SHPEVKLLKFDQNTETFDALKDGR---- 205 (291)
T ss_dssp ----------------------CCSGGGG--TTSEEEEETTSHHHHHHHH--HCTTSEEEEESSHHHHHHHHHTTS----
T ss_pred ----------------------CCCHHHh--CCCEEEEecCCcHHHHHHH--hCCCceEEEeCCHHHHHHHHHcCC----
Confidence 8999999 5999999999999988885 345667888899999999999999
Q ss_pred eeEEEeccccHHHHHhcCCCCcEEeCcccccCce-EEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 616 VSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGL-GFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 616 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
+|+++.+...+.++.++.. .+.++...+...++ +++++|++| |.+.||++|.+|.++| .++++.++|+..
T Consensus 206 vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g-~~~~i~~k~~~~ 277 (291)
T 2yjp_A 206 GVALAHDNALLWAWAKENP-NFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDG-RLKAAYEKTLLP 277 (291)
T ss_dssp SSEEEEEHHHHHHHHHHCT-TEEEEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHH
T ss_pred ccEEEecHHHHHHHHHhCC-CeEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHhccc
Confidence 9999999999999888765 47787777777777 999999998 9999999999999999 999999999874
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.73 E-value=6.1e-18 Score=170.63 Aligned_cols=213 Identities=15% Similarity=0.264 Sum_probs=175.2
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhc---CCccceEEEecCCCCCCCCCChHHHHHHH
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKL---GMKIHPQLVPYEDENGEMAGTYDELLYQI 455 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 455 (753)
+++||+. +.++||.+.+ .++|++.|+++|+++.+++ ++ |+ ++++... +|.+++.+|
T Consensus 39 ~l~vg~~--~~~~p~~~~~----~~~g~~~G~~~~l~~~~~~----~~~~pg~--~v~~~~~---------~~~~~~~~l 97 (259)
T 2v25_A 39 QLIVGVK--NDVPHYALLD----QATGEIKGFEVDVAKLLAK----SILGDDK--KIKLVAV---------NAKTRGPLL 97 (259)
T ss_dssp CEEEEEC--SEETTTEEEE----TTTTEEESHHHHHHHHHHH----HHHSCTT--SEEEEEC---------CTTTHHHHH
T ss_pred eEEEEEC--CCCCCeEEEE----CCCCeEEEeeHHHHHHHHH----HhcCCCc--ceEEEEc---------CHHHHHHHH
Confidence 7999986 5566777651 2578999999999999999 99 85 4555554 689999999
Q ss_pred HcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHH
Q 037761 456 KLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAF 535 (753)
Q Consensus 456 ~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~l 535 (753)
.+|++|++++++..+.+|.+.+.|+.||+....++++++.++
T Consensus 98 ~~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------------------------------------- 139 (259)
T 2v25_A 98 DNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK-------------------------------------- 139 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGC--------------------------------------
T ss_pred hCCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCC--------------------------------------
Confidence 999999998778888899999999999999999999998753
Q ss_pred HhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhh---CCCCCceecCCCHHHHHHHHhcCCC
Q 037761 536 ILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQL---NFSRNQTRPLSNFGEYKEALSNGSR 612 (753)
Q Consensus 536 vl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~ 612 (753)
+++++|| .|+++++..++....++.+.. +. ..++..+.+..+.+.+|..|+
T Consensus 140 ----------------------i~~~~dL--~g~~i~~~~g~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~g~- 193 (259)
T 2v25_A 140 ----------------------YKSLADM--KGANIGVAQAATTKKAIGEAAKKIGI-DVKFSEFPDYPSIKAALDAKR- 193 (259)
T ss_dssp ----------------------CCSGGGC--TTCEEEEETTCSHHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHTTS-
T ss_pred ----------------------CCCHHHh--CCCEEEEecCCchHHHHHHHHHhcCC-ceeEEEeCCHHHHHHHHHcCC-
Confidence 7899999 599999999988877766421 22 236677889999999999999
Q ss_pred CCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCC-CchHhHHHHHHhhhcchHHHHHHHhhc
Q 037761 613 KGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSP-LVSHFSQAILLVRENQTRMDRIEKKYF 685 (753)
Q Consensus 613 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~-l~~~~n~~i~~l~~~G~~~~~~~~~~~ 685 (753)
+|+++.+...+.++.++.. . +++..+...+++++++|+++ +.+.+|++|.++.++ ++++.+||.
T Consensus 194 ---vDa~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~---~~~i~~k~~ 258 (259)
T 2v25_A 194 ---VDAFSVDKSILLGYVDDKS-E--ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE---IDALAKKWG 258 (259)
T ss_dssp ---SSEEEEEHHHHTTTCCTTE-E--ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHHH---HHHHHHHTT
T ss_pred ---CcEEEecHHHHHHHHHhCC-C--ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHHH---HHHHHHHhC
Confidence 9999999888877766643 2 45555566678899999997 999999999999988 778888874
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.91 E-value=3e-09 Score=109.36 Aligned_cols=211 Identities=9% Similarity=0.024 Sum_probs=142.3
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|++|+. |.+.|+... . ...++++.|++ ++|.+ ++++.. .+|.+++.+|.+|
T Consensus 5 ~l~iG~~--p~~~p~~~~--------~----~~~~l~~~l~k----~lG~~--ve~~~~--------~~~~~~i~al~~G 56 (310)
T 3n5l_A 5 VINFGII--STESSQNLK--------S----IWEPFLKDMSQ----QTGYQ--VKAFFA--------PDYAGIIQGMRFD 56 (310)
T ss_dssp EEEEEEC--CSSCHHHHH--------H----HHHHHHHHHHH----HHSSE--EEEECC--------SSHHHHHHHHHTT
T ss_pred EEEEEEe--cCCCHHHHH--------H----HHHHHHHHHHH----HhCCC--EEEEeC--------CCHHHHHHHHHcC
Confidence 7999997 666665431 1 12478888888 99965 445432 2799999999999
Q ss_pred cccEEEee-eeeecc--cceeeeccc-------cccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHH
Q 037761 459 KFDAVVGD-ISIVAS--RTDYVEFTL-------PYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLV 528 (753)
Q Consensus 459 ~~Di~~~~-~~~t~~--r~~~~~fs~-------p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~ 528 (753)
++|+++.+ ...... |.....|+. |++ ..++++++.+
T Consensus 57 ~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~--~~~lvv~~ds-------------------------------- 102 (310)
T 3n5l_A 57 KVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGY--WSLLIANKDS-------------------------------- 102 (310)
T ss_dssp SCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEE--EEEEEEETTC--------------------------------
T ss_pred CCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcce--EEEEEEECCC--------------------------------
Confidence 99999754 333322 322333432 222 2366777654
Q ss_pred HHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhh--cCCeEEEe-cCchH----HHH-HHHhhCCCC---CceecC
Q 037761 529 IWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRT--ESHFVGFQ-SGSFV----EDF-LVKQLNFSR---NQTRPL 597 (753)
Q Consensus 529 ~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~--~~~~~~~~-~~~~~----~~~-~~~~~~~~~---~~~~~~ 597 (753)
+|+|++||++ +|+++++. .++.. ..+ +.+..+... .+.+..
T Consensus 103 ----------------------------~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~ 154 (310)
T 3n5l_A 103 ----------------------------KIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLN 154 (310)
T ss_dssp ----------------------------SCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEE
T ss_pred ----------------------------CCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhcccccc
Confidence 3999999943 47789874 33322 121 211122221 123334
Q ss_pred CCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcC---CCCcEEeCcccccCceEEEEcCCCC--CchHhHHHHHHhhh
Q 037761 598 SNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKY---SSKYTTAGPIYRTDGLGFAFAKDSP--LVSHFSQAILLVRE 672 (753)
Q Consensus 598 ~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~k~s~--l~~~~n~~i~~l~~ 672 (753)
.+..+.+.+|..|+ +|+.+.+...+..+.+.. ..+++++........++++++++.| +++.++.+|..+.+
T Consensus 155 g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~ 230 (310)
T 3n5l_A 155 SSHEVNALAVANKQ----VDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGA 230 (310)
T ss_dssp CCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHcCC----ccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCC
Confidence 56778999999999 999999999888888764 2467777655455567899999954 99999999999999
Q ss_pred cchHHHHHHHhh
Q 037761 673 NQTRMDRIEKKY 684 (753)
Q Consensus 673 ~G~~~~~~~~~~ 684 (753)
+| ...++.+++
T Consensus 231 d~-~~~~~l~~~ 241 (310)
T 3n5l_A 231 NA-EQKKVLADL 241 (310)
T ss_dssp SH-HHHHHHHHT
T ss_pred Ch-hHHHHHHhc
Confidence 99 888887775
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.87 E-value=1.2e-08 Score=97.66 Aligned_cols=170 Identities=11% Similarity=0.045 Sum_probs=124.0
Q ss_pred cceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecc------cceee
Q 037761 404 KTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVAS------RTDYV 477 (753)
Q Consensus 404 ~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~------r~~~~ 477 (753)
+.+|.|+.--|-+.+ + |+ ++.+... ..|.+.+.+|++|++|+++.++..+++ |...+
T Consensus 27 s~~yeGlatgl~~~f-~------gi--~~~i~~m--------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~v 89 (231)
T 2ozz_A 27 TRLYEGLASGLKAQF-D------GI--PFYYAHM--------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIAL 89 (231)
T ss_dssp SHHHHHHHHHHHHTT-T------TS--CEEEEEC--------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEE
T ss_pred hhhhhHHHHHHHHHh-c------CC--cEEEEEc--------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEE
Confidence 346778766654444 1 44 4444443 268999999999999999999999999 99999
Q ss_pred eccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCC
Q 037761 478 EFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPT 557 (753)
Q Consensus 478 ~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~ 557 (753)
+|+.||+.+.-.++++++....
T Consensus 90 dFg~~yYv~~h~li~~~~~~~~---------------------------------------------------------- 111 (231)
T 2ozz_A 90 ELGPHTYVGEHQLICRKGESGN---------------------------------------------------------- 111 (231)
T ss_dssp ECCTTSSSCCEEEEEETTCGGG----------------------------------------------------------
T ss_pred EcCCCccccCeEEEEeCCCccc----------------------------------------------------------
Confidence 9999999888788888774221
Q ss_pred cCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecC-CCHHHHHHHHhcCCCCCCeeEEEe--ccccHHHHHhcCC
Q 037761 558 FADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPL-SNFGEYKEALSNGSRKGGVSAIFE--EIPYIKVFLKKYS 634 (753)
Q Consensus 558 i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~~~~a~~~--~~~~~~~~~~~~~ 634 (753)
| ++||+..+|..+..+.+.. ..+.++..+ .+..+++.+|.+|+ +||++. +..... .. .
T Consensus 112 i----------krVGvd~gS~dq~~lt~~~-~~g~~Ve~ve~~y~~~i~~L~~G~----IDA~Iwn~d~~~a~---~~-~ 172 (231)
T 2ozz_A 112 V----------KRVGLDSRSADQKIMTDVF-FGDSDVERVDLSYHESLQRIVKGD----VDAVIWNVVAENEL---TM-L 172 (231)
T ss_dssp C----------CEEEECTTCHHHHHHHHHH-HTTSCCEEEECCHHHHHHHHHHTS----CCEEEEEC-CHHHH---HH-T
T ss_pred c----------EEEEecCCChhHHHHHhhh-cCCCeEEEEECCHHHHHHHHHcCC----ccEEEEcCcchhhh---cC-C
Confidence 2 7999999999988888522 245566677 78999999999999 999999 444433 11 1
Q ss_pred CCcEEeC--c---ccccCceEEEEcCCCC-CchHhHHHHH
Q 037761 635 SKYTTAG--P---IYRTDGLGFAFAKDSP-LVSHFSQAIL 668 (753)
Q Consensus 635 ~~l~~~~--~---~~~~~~~~~~~~k~s~-l~~~~n~~i~ 668 (753)
++.... . .......+++++|+++ |++.+|+.|.
T Consensus 173 -~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I~ 211 (231)
T 2ozz_A 173 -GLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVD 211 (231)
T ss_dssp -TEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHCC
T ss_pred -CcceeccccccccccCCceEEEEECCCHHHHHHHHHHhH
Confidence 222221 1 2334566688999986 9999988764
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.83 E-value=2.1e-08 Score=103.32 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=141.6
Q ss_pred ceEEeeccCCCCcceEEEEEcCCCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcC
Q 037761 379 SLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK 458 (753)
Q Consensus 379 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (753)
+|++|+. |.+.|... ...--.+++.|++ ++|.+ ++++.. .+|++++..|.+|
T Consensus 15 ~l~~Gv~--p~~~~~~~------------~~~~~~l~~~L~k----~lG~~--ve~~~~--------~~~~~~i~aL~~G 66 (321)
T 3p7i_A 15 ALNFGII--STESQQNL------------KPQWTPFLQDMEK----KLGVK--VNAFFA--------PDYAGIIQGMRFN 66 (321)
T ss_dssp CEEEEEC--CSSCHHHH------------HHHHHHHHHHHHH----HHTSC--EEEECC--------SSHHHHHHHHHTT
T ss_pred cEEEEEe--cCCCHHHH------------HHHHHHHHHHHHH----HHCCC--EEEEec--------CCHHHHHHHHHcC
Confidence 7999997 44444322 1222367788888 99964 555432 2799999999999
Q ss_pred cccEEEee-eeeecc--cceeeeccc-------cccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHH
Q 037761 459 KFDAVVGD-ISIVAS--RTDYVEFTL-------PYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLV 528 (753)
Q Consensus 459 ~~Di~~~~-~~~t~~--r~~~~~fs~-------p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~ 528 (753)
++|+++.+ .+.+.. |.....|.. |++ ...++|++.+
T Consensus 67 ~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y--~~~lvv~~ds-------------------------------- 112 (321)
T 3p7i_A 67 KVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGY--WSVLIVNKDS-------------------------------- 112 (321)
T ss_dssp SCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSB--CEEEEEETTC--------------------------------
T ss_pred CCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcce--EEEEEEECCC--------------------------------
Confidence 99999743 444433 322233432 332 2467777664
Q ss_pred HHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhh--cCCeEEEe-cCchH----HHH-HHHhhCCCCC--ceecCC
Q 037761 529 IWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRT--ESHFVGFQ-SGSFV----EDF-LVKQLNFSRN--QTRPLS 598 (753)
Q Consensus 529 ~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~--~~~~~~~~-~~~~~----~~~-~~~~~~~~~~--~~~~~~ 598 (753)
+|+|++||++ +|+++++. .++.. ..+ +.+..+.... +.+.+.
T Consensus 113 ----------------------------~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~ 164 (321)
T 3p7i_A 113 ----------------------------PINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNA 164 (321)
T ss_dssp ----------------------------SCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEEC
T ss_pred ----------------------------CCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecC
Confidence 3999999932 36788863 33321 222 2112233221 223455
Q ss_pred CHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcC---CCCcEEeCcccccCceEEEEcCCCC--CchHhHHHHHHhhhc
Q 037761 599 NFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKY---SSKYTTAGPIYRTDGLGFAFAKDSP--LVSHFSQAILLVREN 673 (753)
Q Consensus 599 ~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~k~s~--l~~~~n~~i~~l~~~ 673 (753)
+..+.+.+|..|+ +|+.+.+...+..+.++. ..+++++........++++++++.| +++.++.+|..+.++
T Consensus 165 ~~~~a~~al~~G~----vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d 240 (321)
T 3p7i_A 165 GHETNALAVANKQ----VDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKT 240 (321)
T ss_dssp CHHHHHHHHHTTS----SSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHCCC----ceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCC
Confidence 6788999999999 999999998888877654 2468887665555677899999954 999999999999999
Q ss_pred chHHHHHHHhh
Q 037761 674 QTRMDRIEKKY 684 (753)
Q Consensus 674 G~~~~~~~~~~ 684 (753)
| ...++.+++
T Consensus 241 ~-~~~~~l~~~ 250 (321)
T 3p7i_A 241 P-EEKAVLERL 250 (321)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHhc
Confidence 9 888777765
No 77
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=98.23 E-value=1.3e-05 Score=82.33 Aligned_cols=184 Identities=15% Similarity=0.122 Sum_probs=116.3
Q ss_pred hc-CCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeec-ccce----eeeccccccccceEEEEecccCC
Q 037761 425 KL-GMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVA-SRTD----YVEFTLPYSESGVTMLVPVKRDN 498 (753)
Q Consensus 425 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~-~r~~----~~~fs~p~~~~~~~~~v~~~~~~ 498 (753)
++ |. ++++... ..+..++.+|.+|++|+++.+..... .+.+ .+.++.++...+.++++++.++
T Consensus 28 ~~~g~--~v~~~~~--------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~- 96 (308)
T 2x26_A 28 RYPES--KISWVEF--------PAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSP- 96 (308)
T ss_dssp HCTTS--EEEEEEC--------SSHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCS-
T ss_pred hcCCC--ceEEEEC--------CCcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCCC-
Confidence 76 64 5555554 14589999999999999976544321 1111 3456667766778888887643
Q ss_pred CCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCch
Q 037761 499 RHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSF 578 (753)
Q Consensus 499 ~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~ 578 (753)
|++++|| .|+++++..++.
T Consensus 97 -----------------------------------------------------------i~s~~dL--~Gk~i~~~~gs~ 115 (308)
T 2x26_A 97 -----------------------------------------------------------IKTVADL--KGHKVAFQKGSS 115 (308)
T ss_dssp -----------------------------------------------------------CCSGGGG--TTSEEEECTTSH
T ss_pred -----------------------------------------------------------CCCHHHc--CCCEEeeeCCCc
Confidence 8999999 599999987776
Q ss_pred HHHHHHH---hhCCCCCcee-cCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc--ccccCceEEE
Q 037761 579 VEDFLVK---QLNFSRNQTR-PLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP--IYRTDGLGFA 652 (753)
Q Consensus 579 ~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~ 652 (753)
....+.. ..+.....+. ...+..+.+.++.+|+ +|+++.+.+......++. .++++.. .+......++
T Consensus 116 ~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 189 (308)
T 2x26_A 116 SHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG--GVRVLKDGTDLNQTGSFYL 189 (308)
T ss_dssp HHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS--SEEEEEESTTSCCCCEEEE
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC--CcEEEecCCCcCCcceEEE
Confidence 5544332 2333322232 2446788999999999 999998888777666553 3444432 2222222344
Q ss_pred Ec----CCCC-CchHhHHHHHH----hhhcchHHHHHHHhhcC
Q 037761 653 FA----KDSP-LVSHFSQAILL----VRENQTRMDRIEKKYFG 686 (753)
Q Consensus 653 ~~----k~s~-l~~~~n~~i~~----l~~~G~~~~~~~~~~~~ 686 (753)
++ +..| +.+.|++++.+ +.+++-...++..+|++
T Consensus 190 ~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 190 AARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp EEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred EcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 43 3456 88888887776 34443124566667765
No 78
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=98.06 E-value=3.6e-05 Score=80.44 Aligned_cols=157 Identities=15% Similarity=0.014 Sum_probs=98.6
Q ss_pred ChHHHHHHHHcCcccEEEeeeeee----cccceeeeccccccccceEEEEecccCCCCceeEEEecCccccceeeccccc
Q 037761 447 TYDELLYQIKLKKFDAVVGDISIV----ASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDC 522 (753)
Q Consensus 447 ~~~~~~~~l~~~~~Di~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~ 522 (753)
++..++.+|.+|++|+++.+.... .++.....++.++...+..+++++.++
T Consensus 56 ~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~------------------------- 110 (348)
T 3uif_A 56 VGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNST------------------------- 110 (348)
T ss_dssp HHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETTCC-------------------------
T ss_pred CcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECCCC-------------------------
Confidence 366789999999999998655433 344455556566777778888887643
Q ss_pred hhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHH---hhCCCCCceec-CC
Q 037761 523 SKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVK---QLNFSRNQTRP-LS 598 (753)
Q Consensus 523 ~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~ 598 (753)
|+|++|| .|+++++..++..+..+.. ..+.....+.. ..
T Consensus 111 -----------------------------------i~s~~DL--kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~ 153 (348)
T 3uif_A 111 -----------------------------------AKSIKDL--KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV 153 (348)
T ss_dssp -----------------------------------CCSGGGG--TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC
T ss_pred -----------------------------------CCCHHHc--CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC
Confidence 9999999 5999999888776544332 23333222222 22
Q ss_pred CHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCccc---ccCceEEEEcCC----CC-CchHhHHHHHHh
Q 037761 599 NFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIY---RTDGLGFAFAKD----SP-LVSHFSQAILLV 670 (753)
Q Consensus 599 ~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~k~----s~-l~~~~n~~i~~l 670 (753)
+..+.+.+|.+|+ +|+++...+.... .+....+........ .....+++++++ .| +.+.|.+++.+-
T Consensus 154 ~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 154 NPQVGAAALASGT----VDGFFSLFDSYIL-EDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp CHHHHHHHHHHTS----SSEEEESTTHHHH-HHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC----CCEEEechHHHHH-HhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 6778999999999 9999988765532 222211111111111 223456777765 55 666665555443
No 79
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=98.06 E-value=5e-05 Score=78.47 Aligned_cols=155 Identities=18% Similarity=0.162 Sum_probs=95.6
Q ss_pred hc-CCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeee-----cccceeeeccccccccceEEEEecccCC
Q 037761 425 KL-GMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIV-----ASRTDYVEFTLPYSESGVTMLVPVKRDN 498 (753)
Q Consensus 425 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t-----~~r~~~~~fs~p~~~~~~~~~v~~~~~~ 498 (753)
++ |. +++++.. .++..++.+|.+|++|+++.+.... ..+.-.+..+.++...+..+++++.+
T Consensus 54 ~~~g~--~v~~~~~--------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s-- 121 (324)
T 3ksx_A 54 RFPRT--KITWVEF--------PAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKS-- 121 (324)
T ss_dssp HCTTS--EEEEEEE--------SSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC--
T ss_pred hcCCC--ceEEEEC--------CCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCC--
Confidence 55 64 5555554 2688999999999999986554311 11111222233444456778887654
Q ss_pred CCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCch
Q 037761 499 RHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSF 578 (753)
Q Consensus 499 ~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~ 578 (753)
+|++++|| .|+++++..++.
T Consensus 122 ----------------------------------------------------------~I~s~~DL--kGk~i~v~~gs~ 141 (324)
T 3ksx_A 122 ----------------------------------------------------------ALRTVADL--KGKRIAFQKGSS 141 (324)
T ss_dssp ----------------------------------------------------------SCCSGGGG--TTCEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHh--CCCEEEecCCCh
Confidence 39999999 599999997776
Q ss_pred HHHHHHH---hhCCCCC--ceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEE
Q 037761 579 VEDFLVK---QLNFSRN--QTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAF 653 (753)
Q Consensus 579 ~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 653 (753)
....+.+ ..+.... +++.+ +..+.+.+|.+|+ +|+++...+.......+...+.......+.....++++
T Consensus 142 ~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (324)
T 3ksx_A 142 AHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQ----VDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLS 216 (324)
T ss_dssp HHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTC----CSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCC----CCEEEEccHHHHHHHhcCCcEEEecccccCCCccEEEE
Confidence 5443332 2333322 33333 6789999999999 99999888877766555321222223333333445566
Q ss_pred cCC
Q 037761 654 AKD 656 (753)
Q Consensus 654 ~k~ 656 (753)
++.
T Consensus 217 ~~~ 219 (324)
T 3ksx_A 217 SRR 219 (324)
T ss_dssp EHH
T ss_pred CHH
Confidence 554
No 80
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.95 E-value=6.8e-05 Score=78.12 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=95.4
Q ss_pred hcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeee----cccceeeeccccccccceEEEEecccCCCC
Q 037761 425 KLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIV----ASRTDYVEFTLPYSESGVTMLVPVKRDNRH 500 (753)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~ 500 (753)
+.|++ +++... .++..++.+|.+|++|+++++.... .++.....++.++...+..+++++.+..
T Consensus 61 ~~g~~--v~~~~~--------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 128 (346)
T 3qsl_A 61 DEGLD--VSIADF--------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLP-- 128 (346)
T ss_dssp HTTCE--EEEEEC--------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCT--
T ss_pred hhCCe--EEEEec--------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCccc--
Confidence 67754 445443 3789999999999999998765543 3455566666666666778888876421
Q ss_pred ceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEe-cCchH
Q 037761 501 NMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQ-SGSFV 579 (753)
Q Consensus 501 ~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~-~~~~~ 579 (753)
+|+|++|| .|+++++. .++..
T Consensus 129 --------------------------------------------------------~i~s~~DL--~Gk~i~~~~~gs~~ 150 (346)
T 3qsl_A 129 --------------------------------------------------------GYKGPADL--KGRKIGVTAPGSST 150 (346)
T ss_dssp --------------------------------------------------------TCCSGGGG--TTCEEEESSTTSHH
T ss_pred --------------------------------------------------------CCCChHHc--CCCEEEECCCCcHH
Confidence 39999999 59999998 56654
Q ss_pred HHHHHH---hhCCC--CCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcC
Q 037761 580 EDFLVK---QLNFS--RNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKY 633 (753)
Q Consensus 580 ~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~ 633 (753)
+..+.. ..+.. +.+++.+.+..+.+.+|.+|+ +|+++...+.......+.
T Consensus 151 ~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 151 NMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ----IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS----CSEEEEETTHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC----ccEEEecchhHHHHHhCC
Confidence 433321 33333 245566777789999999999 999999888776655553
No 81
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.89 E-value=3.6e-05 Score=78.66 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=91.3
Q ss_pred ceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeee-eeeccc---ceeeecc
Q 037761 405 TTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDI-SIVASR---TDYVEFT 480 (753)
Q Consensus 405 ~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~-~~t~~r---~~~~~fs 480 (753)
..+.|+.+.+-+-+.+ +.|+ ++++++. +....++.+|.+|++|+++++. .....| .....++
T Consensus 15 ~~~~~~~va~~~g~~~----~~Gl--~v~~~~~--------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~ 80 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFA----EEGL--DVDIVFP--------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVA 80 (302)
T ss_dssp GGGHHHHHHHHTTHHH----HTTE--EEEEECC--------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEE
T ss_pred cccHHHHHHHHcChHH----HcCC--cEEEecC--------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEE
Confidence 3456777888787888 8885 4555543 2345899999999999998762 222233 3345566
Q ss_pred ccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCC
Q 037761 481 LPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFAD 560 (753)
Q Consensus 481 ~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s 560 (753)
.++...+..+++++.+. |++
T Consensus 81 ~~~~~~~~~l~~~~~s~------------------------------------------------------------i~s 100 (302)
T 3ix1_A 81 SVVRSPLNHVMFLAEQD------------------------------------------------------------FDS 100 (302)
T ss_dssp EEECSCCEEEEEEGGGC------------------------------------------------------------CSS
T ss_pred EEeccCCEEEEEECCCC------------------------------------------------------------CCC
Confidence 66666778888887643 999
Q ss_pred hhHhhhcCCeEEEecCchHHHHHHH---hhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEe
Q 037761 561 LKKLRTESHFVGFQSGSFVEDFLVK---QLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFE 621 (753)
Q Consensus 561 ~~dL~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~ 621 (753)
++|| .|+++++..++.....+.. ..+.....+.......+...++.+|+ +|+++.
T Consensus 101 ~~DL--~Gk~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~~~~~~~al~~G~----vDa~~~ 158 (302)
T 3ix1_A 101 PADL--VGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGR----ADAVVG 158 (302)
T ss_dssp GGGG--TTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTCHHHHHHHSS----SSEEEE
T ss_pred hHHc--CCCEEEeCCCcchHHHHHHHHHHcCCCHHHeEEEecCccHHHHHhCCC----CCEEEE
Confidence 9999 5999999887664433332 23333323332222345678888999 999874
No 82
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=97.89 E-value=0.00015 Score=73.46 Aligned_cols=170 Identities=11% Similarity=-0.004 Sum_probs=110.5
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhcc-CCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEK-AQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~-~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++.........++.+ +|++||....+.....+ ..+.. .++|+|......+ + +.+..+..++...+..+
T Consensus 59 ~~~~~~~~~~~~~~l~~~-~vdgii~~~~~~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a 130 (296)
T 3brq_A 59 GKHSAEEERQAIQYLLDL-RCDAIMIYPRFLSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNA 130 (296)
T ss_dssp CTTSHHHHHHHHHHHHHT-TCSEEEEECSSSCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEEecCCCChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHH
Confidence 456777777788888865 89998874443333333 34455 8999999864322 1 22345667777778888
Q ss_pred HHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeCh
Q 037761 87 SAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNT 162 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~ 162 (753)
+++|...|.++++++..+.. .+....+.|.+.+++.|+.+.....+....+..+-...+.++.+ .++++|++ .+.
T Consensus 131 ~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d 209 (296)
T 3brq_A 131 VAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SND 209 (296)
T ss_dssp HHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-SSH
T ss_pred HHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-CCh
Confidence 89987789999999986533 45667788999999999765432222222223344455566544 35777664 455
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
..+..+++++++.|+..++.+-|.
T Consensus 210 ~~a~g~~~al~~~g~~vP~di~vv 233 (296)
T 3brq_A 210 DMAIGAMKALHERGVAVPEQVSVI 233 (296)
T ss_dssp HHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceEEE
Confidence 567778999999998655444333
No 83
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=97.88 E-value=0.0001 Score=74.51 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=108.1
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++....+....++.+ +|++||....+.....+..+ .++|+|......+. +.+..+..++...+..++
T Consensus 45 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~ 114 (288)
T 2qu7_A 45 SEENEDKQQDLIETFVSQ-NVSAIILVPVKSKFQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIAT 114 (288)
T ss_dssp CTTCHHHHHHHHHHHHHT-TEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CccEEEEecCCCChHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHH
Confidence 456777777778888865 89998875443322222222 78999998653321 224456778888888899
Q ss_pred HHHHHcCCeEEEEEEeeC--CcccchHHHHHHHHHhCCeEEEEeecc--CCCC----chhhHHHHHHHHhcCCccEEEEE
Q 037761 88 AVLQNFSWHEVVLMYEDT--NYGAGFISFLVDELQENDIRISHMSKI--PTSA----EDFQISKELSKLSTMQTRVFIVH 159 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~--~~g~~~~~~~~~~~~~~g~~v~~~~~~--~~~~----~~~d~~~~l~~l~~~~~~vIi~~ 159 (753)
++|...|.++++++.... .......+.|++.+++.|+.+.....+ .... +..+-...+.++.+.++++|++.
T Consensus 115 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~ 194 (288)
T 2qu7_A 115 KRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVAT 194 (288)
T ss_dssp HHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 999888999999998643 245566788999999999765321111 1111 22223334444443378877654
Q ss_pred eChHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 160 MNTALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
+...+..+++++++.|+..++.+.|.
T Consensus 195 -~d~~a~g~~~al~~~g~~vP~di~vv 220 (288)
T 2qu7_A 195 -NHLLLLGALQAIKESEKEIKKDVIIV 220 (288)
T ss_dssp -SHHHHHHHHHHHHHSSCCBTTTBEEE
T ss_pred -CcHHHHHHHHHHHHhCCCCCCceEEE
Confidence 45567778999999998655444443
No 84
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.87 E-value=0.00042 Score=71.00 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=113.5
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
+..++.......++++.+ +|++||. |..+.........+...++|+|......+. .+.+..+.+++...+..+
T Consensus 39 ~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a 112 (313)
T 2h3h_A 39 QKEDINAQLQMLESFIAE-GVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTA 112 (313)
T ss_dssp SSSCHHHHHHHHHHHHHT-TCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHH
Confidence 457888888888888876 8988875 444443334445566789999998653321 123345678888888889
Q ss_pred HHHHHHc--CCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEe
Q 037761 87 SAVLQNF--SWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHM 160 (753)
Q Consensus 87 ~~~l~~~--~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~ 160 (753)
+++|... |.++++++... ........+.|++.+++.|+++...... ..+..+....+.++.+. .+++|+..
T Consensus 113 ~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~- 189 (313)
T 2h3h_A 113 GLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILND--EEDGARAVSLAEAALNAHPDLDAFFGV- 189 (313)
T ss_dssp HHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEEC--SSCHHHHHHHHHHHHHHCTTCCEEEEC-
T ss_pred HHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecC--CCCHHHHHHHHHHHHHHCcCceEEEEc-
Confidence 9988766 89999999865 2345667788999999999887643322 22334445556665543 45766654
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
+...+..+++++++.|+ +.+...++.+
T Consensus 190 ~d~~a~g~~~al~~~G~-p~dv~vvg~d 216 (313)
T 2h3h_A 190 YAYNGPAQALVVKNAGK-VGKVKIVCFD 216 (313)
T ss_dssp STTHHHHHHHHHHHTTC-TTTSEEEEEC
T ss_pred CCCccHHHHHHHHHcCC-CCCeEEEEeC
Confidence 44456778999999994 2333344433
No 85
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=97.84 E-value=0.00042 Score=69.96 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=108.9
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhcc-CCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEK-AQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~-~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++....+....++.+ +|++||....+... +....+.. .++|+|......+. . ++...+.+++...+..+
T Consensus 45 ~~~~~~~~~~~~~~l~~~-~vdgii~~~~~~~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~ 117 (289)
T 1dbq_A 45 AWNNLEKQRAYLSMMAQK-RVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMA 117 (289)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEEECSCCCH-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEEeccCCH-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHH
Confidence 456777777777788765 89988863333222 23344444 79999998653221 1 22345677888888889
Q ss_pred HHHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeCh
Q 037761 87 SAVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNT 162 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~ 162 (753)
+++|...|.++++++..+ ........+.+++.+++.|+.+.....+....+..+-...+.++.+ .++++|++ .+.
T Consensus 118 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d 196 (289)
T 1dbq_A 118 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGD 196 (289)
T ss_dssp HHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCH
T ss_pred HHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCc
Confidence 999887899999999864 3356677889999999999765322222212223344455566554 35777665 445
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
..+..+++++++.|+..++.+-|.
T Consensus 197 ~~a~g~~~al~~~G~~vP~di~vv 220 (289)
T 1dbq_A 197 IMAMGALCAADEMGLRVPQDVSLI 220 (289)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceEEE
Confidence 567778999999998655444333
No 86
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.82 E-value=5e-05 Score=79.07 Aligned_cols=185 Identities=11% Similarity=0.104 Sum_probs=116.5
Q ss_pred hcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeec-ccceeeecccc--ccccceEEEEecccCCCCc
Q 037761 425 KLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVA-SRTDYVEFTLP--YSESGVTMLVPVKRDNRHN 501 (753)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~-~r~~~~~fs~p--~~~~~~~~~v~~~~~~~~~ 501 (753)
+.|+ ++++... .+|..++.+|.+|++|+++.+..... .|.+..++... ....+..+++++.+
T Consensus 79 ~~G~--~Ve~~~~--------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s----- 143 (341)
T 3un6_A 79 HPKY--KLELVKF--------NNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGM----- 143 (341)
T ss_dssp SCSS--EEEEEEC--------SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTC-----
T ss_pred HcCC--cEEEEEc--------CCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCC-----
Confidence 5664 5555554 36999999999999999987665432 23333332211 12345667776553
Q ss_pred eeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHH
Q 037761 502 MWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVED 581 (753)
Q Consensus 502 ~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~ 581 (753)
.|++++||. .|+++|+..++....
T Consensus 144 -------------------------------------------------------~I~s~~DL~-kGk~i~v~~~~s~~~ 167 (341)
T 3un6_A 144 -------------------------------------------------------HLNEFNNNG-DDYHFGIPHRYSTHY 167 (341)
T ss_dssp -------------------------------------------------------CGGGCCSSS-SCEEEEESCSSSHHH
T ss_pred -------------------------------------------------------CCCCHHHhC-CCCEEEECCCCCHHH
Confidence 399999993 399999987654433
Q ss_pred -----HHHHhhCCCC--CceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCccc-ccC-ceEEE
Q 037761 582 -----FLVKQLNFSR--NQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIY-RTD-GLGFA 652 (753)
Q Consensus 582 -----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~ 652 (753)
+++ ..+... .+++.+ +..+.+.+|.+|+ +|+++...+.......+...........+ ... ..+++
T Consensus 168 ~~~~~~l~-~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 241 (341)
T 3un6_A 168 LLLEELRK-QLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLV 241 (341)
T ss_dssp HHHHHHHH-HTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEE
T ss_pred HHHHHHHH-HcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEE
Confidence 333 334432 334444 5678899999999 99999998887766665432222222222 222 35566
Q ss_pred EcCC----CC-----CchHhHHHHHHhhhcchHHHHHHHhhcCC
Q 037761 653 FAKD----SP-----LVSHFSQAILLVRENQTRMDRIEKKYFGE 687 (753)
Q Consensus 653 ~~k~----s~-----l~~~~n~~i~~l~~~G~~~~~~~~~~~~~ 687 (753)
++++ .| +.+.+++.+..+.+++ .-.++..+|++.
T Consensus 242 ~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~-~~~~~~~~~~~~ 284 (341)
T 3un6_A 242 LRGELLDQHKDVAQAFVQDYKKSGFKMNDRK-QSVDIMTHHFKQ 284 (341)
T ss_dssp ECHHHHHHCHHHHHHHHHHHHHHHHHTTSHH-HHHHHHHHHSSS
T ss_pred ECHHHHHHCHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHhCc
Confidence 6654 44 6666677777777776 444788888764
No 87
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.80 E-value=0.00055 Score=69.49 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=81.6
Q ss_pred CcCChhHhhh------cCCeEEEe-cCchHH---HHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 557 TFADLKKLRT------ESHFVGFQ-SGSFVE---DFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 557 ~i~s~~dL~~------~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
+++|++||+. ...++|.. .++..+ ..+.+..+. +...++|....+.+.+|..|+ +|+++.+....
T Consensus 122 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi-~~~~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~ 196 (312)
T 2f5x_A 122 PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGV-NLLTIPYKGTAPAMNDLLGKQ----VDLMCDQTTNT 196 (312)
T ss_dssp SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTC-CCEEEECSSHHHHHHHHHTTS----SCEEEEEHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCC-CeEEeccCChHHHHHHHHcCC----ccEEEechHHH
Confidence 4999999974 23477775 344433 223323344 244578999999999999999 99999988777
Q ss_pred HHHHhcCCCCcEEe---C--------c--ccc---------cCceEEEEcCCCC--CchHhHHHHHHhhhcchHHHHHHH
Q 037761 627 KVFLKKYSSKYTTA---G--------P--IYR---------TDGLGFAFAKDSP--LVSHFSQAILLVRENQTRMDRIEK 682 (753)
Q Consensus 627 ~~~~~~~~~~l~~~---~--------~--~~~---------~~~~~~~~~k~s~--l~~~~n~~i~~l~~~G~~~~~~~~ 682 (753)
..+++.. +++.+ . + .+. ...+++++|++-| +.+.+++++.++.+++ .+.+..+
T Consensus 197 ~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p-~~~~~~~ 273 (312)
T 2f5x_A 197 TQQITSG--KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADP-KFQERMK 273 (312)
T ss_dssp HHHHHTT--SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred HHHHHcC--CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCH-HHHHHHH
Confidence 6666543 23322 1 1 010 1135788999976 9999999999999999 7776665
Q ss_pred hh
Q 037761 683 KY 684 (753)
Q Consensus 683 ~~ 684 (753)
++
T Consensus 274 ~~ 275 (312)
T 2f5x_A 274 QL 275 (312)
T ss_dssp HT
T ss_pred HC
Confidence 53
No 88
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.77 E-value=0.00013 Score=73.31 Aligned_cols=169 Identities=12% Similarity=-0.001 Sum_probs=100.8
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|+++|....+... .....+...++|+|......+ + +..+..++...+..++
T Consensus 37 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~-~~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~ 106 (276)
T 2h0a_A 37 ILSLARLKRYLENTTLAY-LTDGLILASYDLTE-RFEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAG 106 (276)
T ss_dssp CCSCCCCC---------C-CCSEEEEESCCCC-------CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHhC-CCCEEEEecCCCCH-HHHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHH
Confidence 334555555566666655 88888754333222 333455678999999864322 1 4556778888889999
Q ss_pred HHHHHcCCeEEEEEEeeC-C-----ccc-chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEE
Q 037761 88 AVLQNFSWHEVVLMYEDT-N-----YGA-GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIV 158 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~-~-----~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~ 158 (753)
++|...|.++++++.... . ... ...+.+.+.+++.|+.+.....+....+..+-...+.++.+. .+++|+
T Consensus 107 ~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~- 185 (276)
T 2h0a_A 107 AYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF- 185 (276)
T ss_dssp HHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-
T ss_pred HHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-
Confidence 999888999999998754 3 445 667889999999997643211111111233444555665544 467666
Q ss_pred EeChHHHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 159 HMNTALASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 159 ~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
+.+...+..+++++++.|+..++.+.|.+
T Consensus 186 ~~~d~~a~g~~~al~~~g~~vP~di~vvg 214 (276)
T 2h0a_A 186 AGADQVALGVLEEAVRLGLTPGRDVRVLG 214 (276)
T ss_dssp CSSHHHHHHHHHHHHTTSCTTTTSEEEEE
T ss_pred ECCcHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 55666677899999999987655554443
No 89
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=97.72 E-value=0.00053 Score=69.60 Aligned_cols=170 Identities=9% Similarity=0.076 Sum_probs=115.8
Q ss_pred CChHHHHHHHHHHHhcCCeEEEE-cCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAII-GPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~avi-G~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
.++..-.+....++.+ +|++|| .|..+.........+...++|+|......+... ..+.+..+..++...+..+++
T Consensus 45 ~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~ 121 (297)
T 3rot_A 45 NDVPKQVQFIESALAT-YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGE 121 (297)
T ss_dssp CCHHHHHHHHHHHHHT-CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHH
Confidence 4888888888888887 888877 555555555666677788999999875443211 123455677888888999999
Q ss_pred HHHHcC--CeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeCh
Q 037761 89 VLQNFS--WHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMNT 162 (753)
Q Consensus 89 ~l~~~~--w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~~ 162 (753)
+|...| -++++++..+.. ......+.+++.+++.|+++.... . .....+....+.++.+. .+++|+ +.+.
T Consensus 122 ~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d 197 (297)
T 3rot_A 122 KALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD--V-GTDPNQVQSRVKSYFKIHPETNIIF-CLTS 197 (297)
T ss_dssp HHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--C-CSCHHHHHHHHHHHHHHCTTCCEEE-ESSH
T ss_pred HHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee--c-CCChHHHHHHHHHHHHhCCCCCEEE-EcCC
Confidence 887777 899999986433 345667889999999999987654 2 12234445555664433 456544 4455
Q ss_pred HHHHHHHHHHHHcCCCCCC-EEEEE
Q 037761 163 ALASRLFALVAKNGMMSKG-YTWIV 186 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~-~~wi~ 186 (753)
..+..+++++++.|+..++ .+-|.
T Consensus 198 ~~A~g~~~al~~~g~~vP~~dv~vi 222 (297)
T 3rot_A 198 QALDPLGQMLLHPDRYDFNYQPQVY 222 (297)
T ss_dssp HHHHHHHHHHHSHHHHTCCCCCEEE
T ss_pred cchHHHHHHHHhcCCccCCCceEEE
Confidence 5667788899988875443 34333
No 90
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=97.72 E-value=0.0009 Score=66.89 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=115.2
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCC-CCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQ-IPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~-~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
+..++....+....++.+.+|++||-.. .+.........+...++|+|......+. .+.+..+.+++...+..+
T Consensus 40 ~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~ 114 (276)
T 3ksm_A 40 DDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLA 114 (276)
T ss_dssp STTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHH
Confidence 3567888888899999883399988543 3445556666778889999998653321 122345678888888999
Q ss_pred HHHHHHc----CCeEEEEEEeeC--CcccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEE
Q 037761 87 SAVLQNF----SWHEVVLMYEDT--NYGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFI 157 (753)
Q Consensus 87 ~~~l~~~----~w~~vail~~d~--~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi 157 (753)
+++|... |.++++++.... .......+.+++.+++. |+++.... ....+..+....+.++.+. .+++|+
T Consensus 115 ~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~ 192 (276)
T 3ksm_A 115 ARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAP--YAGDDRGAARSEMLRLLKETPTIDGLF 192 (276)
T ss_dssp HHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECC--BCCSSHHHHHHHHHHHHHHCSCCCEEE
T ss_pred HHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEe--cCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 9988776 899999998543 24556778899999998 88876322 2222344455555555543 456554
Q ss_pred EEeChHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 158 VHMNTALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
. .+...+..+++++++.|+ +.+...++.+
T Consensus 193 ~-~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 193 T-PNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp C-CSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred E-CCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 3 345566778999999997 3343344433
No 91
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.68 E-value=0.00057 Score=69.16 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=81.6
Q ss_pred CcCChhHhhhc------CCeEEEec-CchHH---HHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 557 TFADLKKLRTE------SHFVGFQS-GSFVE---DFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 557 ~i~s~~dL~~~------~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
+++|++||+.. ..++|... ++..+ ..+.+..+. +.+.++|....+.+.+|..|+ +|+++.+....
T Consensus 113 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~-~~~~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~ 187 (301)
T 2qpq_A 113 KYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKT-HMVHVPYKGCGPALNDVLGSQ----IGLAVVTASSA 187 (301)
T ss_dssp SCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTC-CCEEEECSSHHHHHHHHHTTS----SSCEEEEHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCC-CeEEeccCChHHHHHHHHCCC----ccEEEEcHHHH
Confidence 49999999742 23667652 44433 223323344 244678999999999999999 99999887776
Q ss_pred HHHHhcCCCCcEEe---Cc----------cc---------ccCceEEEEcCCCC--CchHhHHHHHHhhhcchHHHHHHH
Q 037761 627 KVFLKKYSSKYTTA---GP----------IY---------RTDGLGFAFAKDSP--LVSHFSQAILLVRENQTRMDRIEK 682 (753)
Q Consensus 627 ~~~~~~~~~~l~~~---~~----------~~---------~~~~~~~~~~k~s~--l~~~~n~~i~~l~~~G~~~~~~~~ 682 (753)
..+++.. +++.+ .+ .+ ....++++.|++-| +.+.+++++.++.+++ .+.+..+
T Consensus 188 ~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~-~~~~~~~ 264 (301)
T 2qpq_A 188 IPFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRD-DVQKKLA 264 (301)
T ss_dssp HHHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred HHHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCH-HHHHHHH
Confidence 6665543 23332 11 00 01236788999976 9999999999999999 7777766
Q ss_pred hh
Q 037761 683 KY 684 (753)
Q Consensus 683 ~~ 684 (753)
++
T Consensus 265 ~~ 266 (301)
T 2qpq_A 265 DL 266 (301)
T ss_dssp HH
T ss_pred HC
Confidence 65
No 92
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.68 E-value=0.00068 Score=68.90 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=81.6
Q ss_pred CcCChhHhhhc-----C-CeEEEe-cCchHH---HHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 557 TFADLKKLRTE-----S-HFVGFQ-SGSFVE---DFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 557 ~i~s~~dL~~~-----~-~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
+++|++||+.. + .++|.. .++..+ ..+.+..+. +.+.++|....+.+.+|..|+ +|+++.+....
T Consensus 126 ~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi-~~~~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~ 200 (314)
T 2dvz_A 126 PAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGT-DIVHVPYKGSGPAVADAVGGQ----IELIFDNLPSS 200 (314)
T ss_dssp SCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTC-CCEEEECSSHHHHHHHHHHTS----SSEEEEEHHHH
T ss_pred CCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCC-CeEEcccCCHHHHHHHHHcCC----ceEEEEcHHHH
Confidence 38999999742 2 367765 344332 233333344 234678999999999999999 99999887776
Q ss_pred HHHHhcCCCCcEEe---Cc----------cc---------ccCceEEEEcCCCC--CchHhHHHHHHhhhcchHHHHHHH
Q 037761 627 KVFLKKYSSKYTTA---GP----------IY---------RTDGLGFAFAKDSP--LVSHFSQAILLVRENQTRMDRIEK 682 (753)
Q Consensus 627 ~~~~~~~~~~l~~~---~~----------~~---------~~~~~~~~~~k~s~--l~~~~n~~i~~l~~~G~~~~~~~~ 682 (753)
..+++.. +++.+ .+ .+ ....++++.|++-| +.+.+++++.++.+++ .+.+..+
T Consensus 201 ~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p-~~~~~~~ 277 (314)
T 2dvz_A 201 MPQIQAG--KLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDP-KVIKALD 277 (314)
T ss_dssp HHHHHTT--SSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred HHHHHcC--CEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCH-HHHHHHH
Confidence 6666543 22222 11 00 01136788999976 9999999999999999 7777666
Q ss_pred hh
Q 037761 683 KY 684 (753)
Q Consensus 683 ~~ 684 (753)
++
T Consensus 278 ~~ 279 (314)
T 2dvz_A 278 DQ 279 (314)
T ss_dssp HH
T ss_pred HC
Confidence 54
No 93
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=97.65 E-value=0.0016 Score=67.26 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=110.1
Q ss_pred CCCChHHHHHHHHHHHhcCC--eEEEEcCCCCCc-HHHHHHhhccCCccEEeecCCCCCCCCCCC--CceEEEecCcHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQ--VQAIIGPQIPAA-APFLVELGEKAQVPIISFFETSPALSPTEH--PFFIRVTQNDSLQ 82 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~--V~aviG~~~s~~-~~av~~i~~~~~vP~is~~a~~~~l~~~~~--~~~fr~~p~~~~~ 82 (753)
...++.........++.+ + |.+||....+.. .......+...++|+|......+......+ +.+..+..++...
T Consensus 43 ~~~~~~~~~~~i~~l~~~-~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~ 121 (332)
T 2rjo_A 43 TEGSSEKGIADIRALLQK-TGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAY 121 (332)
T ss_dssp CTTCHHHHHHHHHHHHHH-TTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-CCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHH
Confidence 456777777788888877 6 999886443332 223444456679999998654332111111 3566778888888
Q ss_pred HHHHHHHHHH--cCCeEEEEEEeeCC--cccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhcC---Ccc
Q 037761 83 VKAISAVLQN--FSWHEVVLMYEDTN--YGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLSTM---QTR 154 (753)
Q Consensus 83 ~~a~~~~l~~--~~w~~vail~~d~~--~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~ 154 (753)
+..++++|.. .|.++|++|..... ......+.|++.+++. |+.+..... . ..+..+....+.++.+. .++
T Consensus 122 g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~~~~ 199 (332)
T 2rjo_A 122 GEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQV-A-DWNSQKAFPIMQAWMTRFNSKIK 199 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE-C-TTCHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEeecc-C-CCCHHHHHHHHHHHHHhcCCCee
Confidence 8999998866 69999999986432 4566778899999999 988754322 1 22233444555555443 456
Q ss_pred EEEEEeChHHHHHHHHHHHHcCCC
Q 037761 155 VFIVHMNTALASRLFALVAKNGMM 178 (753)
Q Consensus 155 vIi~~~~~~~~~~~~~~a~~~g~~ 178 (753)
+|+ +.+...+..+++++++.|+.
T Consensus 200 aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 200 GVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp EEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred EEE-ECCCchHHHHHHHHHHcCCC
Confidence 554 34555677799999999975
No 94
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.64 E-value=0.0017 Score=67.49 Aligned_cols=177 Identities=9% Similarity=-0.022 Sum_probs=114.7
Q ss_pred CCCChHHHHHHHHHHHhc-CCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCC-------CCCC-ceEEEecC
Q 037761 8 KQFKDCGKLILAVDLLKK-FQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP-------TEHP-FFIRVTQN 78 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~-~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~-------~~~~-~~fr~~p~ 78 (753)
.+.++..-.+...+++.+ .+|++||-.........+...+...++|+|......+.... ..++ ++..+.++
T Consensus 42 ~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D 121 (350)
T 3h75_A 42 AERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGD 121 (350)
T ss_dssp CTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECC
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCC
Confidence 567888888889999985 58888775434445566667778899999998764443220 1111 26677788
Q ss_pred cHHHHHHHHHHHHHcC------C-eEEEEEEeeCC--cccchHHHHHHHHHhCCe-EEEEeeccCCCCchhhHHHHHHHH
Q 037761 79 DSLQVKAISAVLQNFS------W-HEVVLMYEDTN--YGAGFISFLVDELQENDI-RISHMSKIPTSAEDFQISKELSKL 148 (753)
Q Consensus 79 ~~~~~~a~~~~l~~~~------w-~~vail~~d~~--~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l 148 (753)
+...+..++++|...+ - ++++++..... ......+.+.+.+++.|. .+... +....+..+-...+.++
T Consensus 122 ~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 199 (350)
T 3h75_A 122 DEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGEWNRERAYRQAQQL 199 (350)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCCCcHHHHHHHHHHH
Confidence 8888899999886555 4 89999985432 345567889999999986 22222 22222334444555555
Q ss_pred hcCCccEEE-EEeChHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 149 STMQTRVFI-VHMNTALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 149 ~~~~~~vIi-~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
.+..+++-. ++++...+..+++++++.|+..++.+-|+
T Consensus 200 L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vv 238 (350)
T 3h75_A 200 LKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFS 238 (350)
T ss_dssp HHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 544444433 34455567779999999998755444443
No 95
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.63 E-value=0.00053 Score=71.12 Aligned_cols=171 Identities=11% Similarity=0.013 Sum_probs=113.9
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +|+++|-.........+...+...++|+|......+. +.+..+..++...+..++
T Consensus 101 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~ 173 (338)
T 3dbi_A 101 GKHSAEEERQAIQYLLDL-RCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAV 173 (338)
T ss_dssp CTTSHHHHHHHHHHHHHT-TCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHH
Confidence 456677777777777765 8999886444444556777888899999987653322 122346777788888889
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeChH
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNTA 163 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~ 163 (753)
++|...|.++++++..... ......+.|.+.+++.|+.+.....+....+..+-...+.++.+ ..+++|++ .+..
T Consensus 174 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~ 252 (338)
T 3dbi_A 174 AELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDD 252 (338)
T ss_dssp HHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHH
T ss_pred HHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChH
Confidence 9998889999999986432 34566788999999999765422222222233344445555543 45676654 4555
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEE
Q 037761 164 LASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
.+..+++++++.|+..++.+-|.
T Consensus 253 ~A~g~~~al~~~G~~vP~di~vv 275 (338)
T 3dbi_A 253 MAIGAMKALHERGVAVPEQVSVI 275 (338)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHcCCCCCCCeEEE
Confidence 67789999999998765544443
No 96
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.61 E-value=0.0013 Score=66.27 Aligned_cols=162 Identities=8% Similarity=0.010 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCe
Q 037761 17 ILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWH 96 (753)
Q Consensus 17 ~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~ 96 (753)
....+++...+|++||-....... .....+...++|+|..+...+. . .+-.+..++...+..++++|...|.+
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~---~---~~~~V~~D~~~~g~~a~~~L~~~G~~ 128 (288)
T 3gv0_A 56 VPIRYILETGSADGVIISKIEPND-PRVRFMTERNMPFVTHGRSDMG---I---EHAFHDFDNEAYAYEAVERLAQCGRK 128 (288)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTC-HHHHHHHHTTCCEEEESCCCSS---C---CCEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCccEEEEecCCCCc-HHHHHHhhCCCCEEEECCcCCC---C---CCcEEEeCcHHHHHHHHHHHHHCCCC
Confidence 344445555588887743222222 3445566789999987653221 1 23346778888889999999888999
Q ss_pred EEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeChHHHHHHHHHH
Q 037761 97 EVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMNTALASRLFALV 172 (753)
Q Consensus 97 ~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~~~~~~~~~~~a 172 (753)
+++++..... ......+.+.+.+++.|+.+.....+....+..+....+.++.+. .+++|+ +.+...+..+++++
T Consensus 129 ~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al 207 (288)
T 3gv0_A 129 RIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGF 207 (288)
T ss_dssp EEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHH
T ss_pred eEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHH
Confidence 9999986543 345667889999999998875443333233344555566666554 466665 44556677799999
Q ss_pred HHcCCCCCCEEEEE
Q 037761 173 AKNGMMSKGYTWIV 186 (753)
Q Consensus 173 ~~~g~~~~~~~wi~ 186 (753)
++.|+..++.+-|+
T Consensus 208 ~~~g~~vP~di~vi 221 (288)
T 3gv0_A 208 EAAGVKIGEDVDIV 221 (288)
T ss_dssp HTTTCCTTTSCEEE
T ss_pred HHcCCCCCCceEEE
Confidence 99998755544444
No 97
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.60 E-value=0.00069 Score=70.03 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=107.8
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|+++|..........+. .+...++|+|......+ +. .+..+..++...+..++
T Consensus 101 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~~~~a~ 172 (332)
T 2o20_A 101 SDNDVEKEEKVLETFLSK-QVDGIVYMGSSLDEKIRT-SLKNSRTPVVLVGTIDG---DK---EIPSVNIDYHLAAYQST 172 (332)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECSSCCCHHHHH-HHHHHCCCEEEESCCCT---TS---CSCEEECCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEeCCCCCHHHHH-HHHhCCCCEEEEccccC---CC---CCCEEEeChHHHHHHHH
Confidence 456676666777777765 899988643322233333 34467999999865322 11 22345677777788889
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHH
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALA 165 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~ 165 (753)
++|...|.++++++..... ......+.|.+.+++.|+.+.....+....+..+-...+.++.+..+++|++ .+...+
T Consensus 173 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A 251 (332)
T 2o20_A 173 KKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVA 251 (332)
T ss_dssp HHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHH
T ss_pred HHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHH
Confidence 9988889999999986532 3456678899999999976542211221222223333444443337887776 455567
Q ss_pred HHHHHHHHHcCCCCCCEEEEE
Q 037761 166 SRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 166 ~~~~~~a~~~g~~~~~~~wi~ 186 (753)
..+++++++.|+..++.+.|.
T Consensus 252 ~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 252 VGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp HHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHcCCCCccCEEEE
Confidence 778999999998755544444
No 98
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.60 E-value=0.00097 Score=66.67 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=108.0
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|+++|-....... .....+...++|+|......+ + +.+..+..++...+..++
T Consensus 41 ~~~~~~~~~~~~~~l~~~-~vdgii~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~ 112 (275)
T 3d8u_A 41 SDYSIEQEEKLLSTFLES-RPAGVVLFGSEHSQ-RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACT 112 (275)
T ss_dssp CTTCHHHHHHHHHHHHTS-CCCCEEEESSCCCH-HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCH-HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHH
Confidence 445676666777777765 88887643222222 333445567999999764322 1 234456777788888899
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeChH
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMNTA 163 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~~~ 163 (753)
++|...|.++++++..... ......+.|++.+++.|+.+.....+....+..+-...+.++.+. .+++|+. .+..
T Consensus 113 ~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~ 191 (275)
T 3d8u_A 113 RHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVC-SHEE 191 (275)
T ss_dssp HHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEE-SSHH
T ss_pred HHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-cCcH
Confidence 9888789999999986533 345667889999999987543222222122233444455555443 4676654 4555
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEE
Q 037761 164 LASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
.+..+++++++.|+..++.+.|.
T Consensus 192 ~a~g~~~al~~~g~~vP~di~vv 214 (275)
T 3d8u_A 192 IAIGALFECHRRVLKVPTDIAII 214 (275)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHcCCCCCCceEEE
Confidence 67788999999998655544444
No 99
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.59 E-value=0.0011 Score=67.00 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=108.8
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|++||-.........+ ..+...++|+|......+ +. .+..+..++...+..++
T Consensus 54 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~ 125 (289)
T 2fep_A 54 SDQNMEKELHLLNTMLGK-QVDGIVFMGGNITDEHV-AEFKRSPVPIVLAASVEE---QE---ETPSVAIDYEQAIYDAV 125 (289)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCSCCCHHHH-HHHHHSSSCEEEESCCCT---TC---CSCEEECCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEecCCCCHHHH-HHHHhcCCCEEEEccccC---CC---CCCEEEECcHHHHHHHH
Confidence 456677667777777765 89988863332223333 334568999999864322 11 23346777888888899
Q ss_pred HHHHHcCCeEEEEEEeeC-C--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeCh
Q 037761 88 AVLQNFSWHEVVLMYEDT-N--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMNT 162 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~-~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~~ 162 (753)
++|...|.++++++.... . ......+.|++.+++.|+.+.....+....+..+-...+.++.+. .+++|+. .+.
T Consensus 126 ~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d 204 (289)
T 2fep_A 126 KLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-ATD 204 (289)
T ss_dssp HHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-SSH
T ss_pred HHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-CCH
Confidence 999888999999998654 2 345677889999999997653211111122233444455665543 5676654 455
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
..+..+++++++.|+..++.+-|.
T Consensus 205 ~~A~g~~~al~~~G~~vP~di~vv 228 (289)
T 2fep_A 205 EMALGIIHAAQDQGLSIPEDLDII 228 (289)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEE
Confidence 567788999999998655444333
No 100
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=97.59 E-value=0.003 Score=64.59 Aligned_cols=171 Identities=7% Similarity=0.030 Sum_probs=108.7
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEE-cCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAII-GPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~avi-G~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
.+.++.........|+.+ +|.+|| .|..+....++...+...++|+|.+....+. . ....+....++...++.+
T Consensus 42 ~~~d~~~q~~~i~~li~~-~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~~---~-~~~~~v~~~D~~~~g~~~ 116 (316)
T 1tjy_A 42 TEPSVSGQVQLVNNFVNQ-GYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKP---E-CRSYYINQGTPKQLGSML 116 (316)
T ss_dssp SSCCHHHHHHHHHHHHHT-TCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCG---G-GCSEEEESCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCCC---C-CceEEEecCCHHHHHHHH
Confidence 467888888888999976 888855 5665555455666677889999998642211 1 122333356777778888
Q ss_pred HHHHHH---cCCeEEEEEEeeC--CcccchHHHHHHHHHhC--CeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEE
Q 037761 87 SAVLQN---FSWHEVVLMYEDT--NYGAGFISFLVDELQEN--DIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFI 157 (753)
Q Consensus 87 ~~~l~~---~~w~~vail~~d~--~~g~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi 157 (753)
+++|.. .|-++++++.... .......+.+.+.+++. ++++..... . ..+..+....+.++.+. ++++|+
T Consensus 117 ~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~~~aI~ 194 (316)
T 1tjy_A 117 VEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQF-G-YNDATKSLQTAEGIIKAYPDLDAII 194 (316)
T ss_dssp HHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE-C-TTCHHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEecc-C-CCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 888755 5789999998532 23456677888888765 666654322 1 22234444555555443 456555
Q ss_pred EEeChHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 158 VHMNTALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
.. +...+..+++++++.| . .+...++.+
T Consensus 195 ~~-nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 195 AP-DANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp EC-STTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred EC-CCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 43 4455677888999988 5 443444443
No 101
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.59 E-value=0.0018 Score=65.92 Aligned_cols=173 Identities=10% Similarity=-0.004 Sum_probs=111.7
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-.+....++.+ +|++||- |..+.........+...++|+|......+.. +.+..+.+++...+..+
T Consensus 43 ~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~d~~~~g~~~ 116 (305)
T 3g1w_A 43 AQYDIQEQITVLEQAIAK-NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS-----HAHSFLGTNNYNAGMNA 116 (305)
T ss_dssp SSSCHHHHHHHHHHHHHH-CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS-----CCSCEEECCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHh-CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-----ceeEEECcCHHHHHHHH
Confidence 567888888888888887 8888774 4444444445556677899999987543211 12345678888888999
Q ss_pred HHHHHHc--CCeEEEEEEeeCC-cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeC
Q 037761 87 SAVLQNF--SWHEVVLMYEDTN-YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMN 161 (753)
Q Consensus 87 ~~~l~~~--~w~~vail~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~ 161 (753)
+++|... |-++++++..... ......+.|++.+++.|..+.....+....+..+-...+.++.+. ++++|+ +.+
T Consensus 117 ~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~ 195 (305)
T 3g1w_A 117 AYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-ATE 195 (305)
T ss_dssp HHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESS
T ss_pred HHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-ECC
Confidence 9988777 9999999985432 334456788899988765443322222222334444555555443 345443 345
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
...+..+++++++.|+. .+...++.+
T Consensus 196 d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 196 ANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred CcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 55677889999999985 444444444
No 102
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.56 E-value=0.0019 Score=65.28 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=108.2
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|++||-...+.....+...+...++|+|......+ + +.+..+..++...+..++
T Consensus 58 ~~~~~~~~~~~~~~l~~~-~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~ 130 (293)
T 2iks_A 58 SEDQPDNEMRCIEHLLQR-QVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLA 130 (293)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHH
Confidence 445677667777777765 899887643332222343455678999999865322 1 123456677888888899
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeChH
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMNTA 163 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~~~ 163 (753)
++|...|.++++++..... ......+.|++.+++.|+...... ....+..+-...+.++.+. .+++|++ .+..
T Consensus 131 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~ 207 (293)
T 2iks_A 131 EELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLY--ANSYEREAAAQLFEKWLETHPMPQALFT-TSFA 207 (293)
T ss_dssp HHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEE--ESSSCHHHHHHHHHHHTTTSCCCSEEEE-SSHH
T ss_pred HHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEEE--cCCCChhhHHHHHHHHHhcCCCCCEEEE-CChH
Confidence 9988889999999987533 345667889999999987433221 1112233344455665543 4676654 4555
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEE
Q 037761 164 LASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
.+..+++++++.|+..++.+-|.
T Consensus 208 ~a~g~~~al~~~g~~vP~di~vv 230 (293)
T 2iks_A 208 LLQGVMDVTLRRDGKLPSDLAIA 230 (293)
T ss_dssp HHHHHHHHHHHHHSSCCSSCEEE
T ss_pred HHHHHHHHHHHcCCCCCCceEEE
Confidence 67778999999998655444443
No 103
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=97.56 E-value=0.0021 Score=64.69 Aligned_cols=161 Identities=12% Similarity=-0.019 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEcCCCCCcH-HHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 9 QFKDCGKLILAVDLLKKFQVQAIIGPQIPAAA-PFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 9 ~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~-~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
..++....+....++.+ +|+++|....+... ......+...++|+|......+. .+.+..+.+++...+..++
T Consensus 48 ~~~~~~~~~~~~~l~~~-~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~ 121 (289)
T 3brs_A 48 EEDYLVQNELIEEAIKR-KPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIG 121 (289)
T ss_dssp TTCHHHHHHHHHHHHHT-CCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHH
Confidence 56777778888888875 89998864433322 24445556689999998653221 1235567788888888899
Q ss_pred HHHHH-cC-CeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeC
Q 037761 88 AVLQN-FS-WHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMN 161 (753)
Q Consensus 88 ~~l~~-~~-w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~ 161 (753)
++|.. .| .++++++..... ......+.|.+.+++.|..+.... .. ..+..+....+.++.+. .+++|+ +.+
T Consensus 122 ~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~ 198 (289)
T 3brs_A 122 AVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIY-YC-DSNYDKAYDGTVELLTKYPDISVMV-GLN 198 (289)
T ss_dssp HHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEE-EC-TTCHHHHHHHHHHHHHHCTTEEEEE-ESS
T ss_pred HHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEeee-cC-CCCHHHHHHHHHHHHHhCCCceEEE-ECC
Confidence 98866 46 999999986432 445667889999999886543222 11 22334444555555443 355554 345
Q ss_pred hHHHHHHHHHHHHcCCC
Q 037761 162 TALASRLFALVAKNGMM 178 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~ 178 (753)
...+..+++++++.|+.
T Consensus 199 d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 199 QYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHHHHHHHTTCT
T ss_pred CcchHHHHHHHHhcCCC
Confidence 55677789999999985
No 104
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.56 E-value=0.001 Score=67.26 Aligned_cols=175 Identities=9% Similarity=0.085 Sum_probs=108.7
Q ss_pred eecCCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHH
Q 037761 5 LLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVK 84 (753)
Q Consensus 5 ~~~d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~ 84 (753)
++.+..+.........+.+...+|++||-...... ......+...++|+|......+.. +.+..+..++...+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~ 120 (292)
T 3k4h_A 47 YMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-DRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAR 120 (292)
T ss_dssp EECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-CHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHH
Confidence 33433333333334444444458999875332222 245556677899999986533221 113446778888889
Q ss_pred HHHHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEe
Q 037761 85 AISAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHM 160 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~ 160 (753)
.++++|...|.++++++..... ......+.|.+.+++.|+.+.....+....+..+....+.++.+. .+++|+ +.
T Consensus 121 ~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~ 199 (292)
T 3k4h_A 121 EVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-AT 199 (292)
T ss_dssp HHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ES
T ss_pred HHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-Ec
Confidence 9999998889999999986533 345667889999999997653222111122334455556665554 566665 44
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
+...+..+++++++.|+..++.+-|.
T Consensus 200 ~d~~a~g~~~al~~~g~~vP~di~vi 225 (292)
T 3k4h_A 200 DDLIGLGVLSALSKKGFVVPKDVSIV 225 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred ChHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 56667789999999998655444333
No 105
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.54 E-value=0.002 Score=64.17 Aligned_cols=170 Identities=9% Similarity=0.002 Sum_probs=111.6
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +++++|-.............+...++|+|..+...+. +.+..+..++...+..++
T Consensus 40 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~ 112 (272)
T 3o74_A 40 SDDQPDSERQLQQLFRAR-RCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDP------AHFCSVISDDRDASRQLA 112 (272)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCT------TTCEEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCc------cccCEEEEchHHHHHHHH
Confidence 456677777777777776 8888775333322233445566789999988653321 123446778888888899
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--C-CccEEEEEeCh
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--M-QTRVFIVHMNT 162 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~-~~~vIi~~~~~ 162 (753)
++|...|.++++++..... ......+.+++.+++.|+.+.....-. .+..+-...+.++.+ . .+++|+. .+.
T Consensus 113 ~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d 189 (272)
T 3o74_A 113 ASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALVT-TSY 189 (272)
T ss_dssp HHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEEE-SSH
T ss_pred HHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEEE-eCc
Confidence 9998889999999987543 445667889999999998765443222 223344444555433 2 4777654 456
Q ss_pred HHHHHHHHHHHHcCCCCCCEE-EEEcC
Q 037761 163 ALASRLFALVAKNGMMSKGYT-WIVTA 188 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~-wi~~~ 188 (753)
..+..+++++++.|+ .++.+ .++.+
T Consensus 190 ~~a~g~~~al~~~g~-vp~di~vvg~d 215 (272)
T 3o74_A 190 VLLQGVFDTLQARPV-DSRQLQLGTFG 215 (272)
T ss_dssp HHHHHHHHHHHTSCG-GGCCCEEEEES
T ss_pred hHHHHHHHHHHHcCC-CccceEEEEeC
Confidence 667789999999997 44444 34433
No 106
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.54 E-value=0.00061 Score=68.88 Aligned_cols=169 Identities=9% Similarity=-0.012 Sum_probs=104.8
Q ss_pred CCChHHHHH---HHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHH
Q 037761 9 QFKDCGKLI---LAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKA 85 (753)
Q Consensus 9 ~~~~~~a~~---~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a 85 (753)
..++..... ....++.+ +|+++|-........ ....+...++|+|......+. +.+..+..++...+..
T Consensus 47 ~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~-~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~ 118 (290)
T 2rgy_A 47 CGESTPREQALEAVRFLIGR-DCDGVVVISHDLHDE-DLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGEL 118 (290)
T ss_dssp CSSSCHHHHHHHHHHHHHHT-TCSEEEECCSSSCHH-HHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHH
T ss_pred CCchhhhhhHHHHHHHHHhc-CccEEEEecCCCCHH-HHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHH
Confidence 345555555 56666655 899988643333332 333445579999998653321 1233466777778888
Q ss_pred HHHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeC
Q 037761 86 ISAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMN 161 (753)
Q Consensus 86 ~~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~ 161 (753)
++++|...|.++++++..... ......+.+++.+++.|+.+.....+....+..+-...+.++.+ ..+++|+ +.+
T Consensus 119 a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~ 197 (290)
T 2rgy_A 119 AAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CAN 197 (290)
T ss_dssp HHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESS
T ss_pred HHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECC
Confidence 899988789999999986533 34556788999999998754221111111222333334444433 4678776 455
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
...+..+++++++.|+..++.+-|.
T Consensus 198 d~~A~g~~~al~~~G~~vP~di~vv 222 (290)
T 2rgy_A 198 DTMAVSALARFQQLGISVPGDVSVI 222 (290)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cHHHHHHHHHHHHcCCCCCCceEEE
Confidence 5667789999999998655444333
No 107
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=97.53 E-value=0.0013 Score=66.44 Aligned_cols=162 Identities=10% Similarity=-0.035 Sum_probs=110.4
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEE-cCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAII-GPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~avi-G~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|++|| .|..+.........+...++|+|......+ +.+..+..++...+..+
T Consensus 43 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~ 114 (291)
T 3l49_A 43 AGRNDQTQVSQIQTLIAQ-KPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAEL 114 (291)
T ss_dssp CTTCHHHHHHHHHHHHHH-CCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHH
Confidence 566777777888888876 898887 454444555666667788999999865332 12445677888888999
Q ss_pred HHHHHH--cCCeEEEEEEeeCC--cccchHHHHHHHHHhC-CeEEEEeeccCCC-CchhhHHHHHHHHhcC-----CccE
Q 037761 87 SAVLQN--FSWHEVVLMYEDTN--YGAGFISFLVDELQEN-DIRISHMSKIPTS-AEDFQISKELSKLSTM-----QTRV 155 (753)
Q Consensus 87 ~~~l~~--~~w~~vail~~d~~--~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~-~~~~d~~~~l~~l~~~-----~~~v 155 (753)
+++|.. .|-++++++..... ......+.+++.+++. |+++.....+... .+..+-...+.++.+. ++++
T Consensus 115 ~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 194 (291)
T 3l49_A 115 ALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGA 194 (291)
T ss_dssp HHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCE
T ss_pred HHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCE
Confidence 998877 89999999975433 3345577899999998 6776544333221 1223334455555433 5676
Q ss_pred EEEEeChHHHHHHHHHHHHcCCC
Q 037761 156 FIVHMNTALASRLFALVAKNGMM 178 (753)
Q Consensus 156 Ii~~~~~~~~~~~~~~a~~~g~~ 178 (753)
|+ +.+...+..+++++++.|+.
T Consensus 195 i~-~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 195 IW-ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp EE-ESSHHHHHHHHHHHHHTTCC
T ss_pred EE-ECCCchHHHHHHHHHHcCCC
Confidence 64 45666777889999999975
No 108
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=97.53 E-value=0.0024 Score=64.36 Aligned_cols=161 Identities=9% Similarity=0.006 Sum_probs=103.2
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCC-CCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEE-EecCcHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQI-PAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIR-VTQNDSLQVKA 85 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~-s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr-~~p~~~~~~~a 85 (753)
...++.........++.+ +|+++|.... +.........+...++|+|......+. . +.+.. +..++...+..
T Consensus 40 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~ 113 (290)
T 2fn9_A 40 SQNDTAKESAHFDAIIAA-GYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVL 113 (290)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHH
Confidence 456787777888888875 8998886433 332223444556689999998653321 1 11223 66777778888
Q ss_pred HHHHHHHc------CCeE--EEEEEeeC--CcccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhc--CC
Q 037761 86 ISAVLQNF------SWHE--VVLMYEDT--NYGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLST--MQ 152 (753)
Q Consensus 86 ~~~~l~~~------~w~~--vail~~d~--~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~ 152 (753)
++++|... |.++ ++++.... .......+.|++.+++. |+++..... . ..+..+-...+.++.+ ..
T Consensus 114 ~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~ 191 (290)
T 2fn9_A 114 AGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQS-A-EFDRDTAYKVTEQILQAHPE 191 (290)
T ss_dssp HHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEEE-C-TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEecc-C-CCCHHHHHHHHHHHHHhCCC
Confidence 88988666 7888 66666432 24456678899999998 887653321 1 1223333445555443 35
Q ss_pred ccEEEEEeChHHHHHHHHHHHHcCC
Q 037761 153 TRVFIVHMNTALASRLFALVAKNGM 177 (753)
Q Consensus 153 ~~vIi~~~~~~~~~~~~~~a~~~g~ 177 (753)
+++|++ .+...+..+++++++.|+
T Consensus 192 ~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 192 IKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp CCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CcEEEE-CCchHHHHHHHHHHHCCC
Confidence 677664 455567788999999997
No 109
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=97.51 E-value=0.0013 Score=66.19 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=105.9
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|++||..........+. .+. .++|+|......+ + +.+..+..++...+..++
T Consensus 46 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~~~~-~l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~ 116 (285)
T 3c3k_A 46 TESDLARSRSCLTLLSGK-MVDGVITMDALSELPELQ-NII-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVV 116 (285)
T ss_dssp CTTCHHHHHHHTHHHHTT-CCSEEEECCCGGGHHHHH-HHH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEeCCCCChHHHH-HHh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHH
Confidence 445666666667777755 899988643332223333 345 8999999865322 1 123346677777788889
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEE-EeeccCCCCchhhHHHHHHH--HhcC--CccEEEEEe
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRIS-HMSKIPTSAEDFQISKELSK--LSTM--QTRVFIVHM 160 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~-~~~~~~~~~~~~d~~~~l~~--l~~~--~~~vIi~~~ 160 (753)
++|...|.++++++..... ......+.|++.+++.|+.+. ....+ +..+-...+.+ +.+. .+++|++ .
T Consensus 117 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~~-~ 191 (285)
T 3c3k_A 117 DQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAE----NLDYMAGKLATFSLLKSAVKPDAIFA-I 191 (285)
T ss_dssp HHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECS----SSSHHHHHHHHHHHHSSSSCCSEEEE-S
T ss_pred HHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCC----ChHHHHHHHHHHHHHcCCCCCeEEEE-C
Confidence 9887789999999986533 345667889999999887643 11111 12233445555 5443 5676664 4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 161 NTALASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
+...+..+++++++.|+..++.+-|.+
T Consensus 192 ~d~~A~g~~~al~~~g~~vP~di~vvg 218 (285)
T 3c3k_A 192 SDVLAAGAIQALTESGLSIPQDVAVVG 218 (285)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 555677789999999986555444443
No 110
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=97.51 E-value=0.0017 Score=65.94 Aligned_cols=171 Identities=8% Similarity=0.009 Sum_probs=107.6
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
+..++.........++.+ +|++||- |..+....+....+...++|+|...... ... +.+..+..++...+..+
T Consensus 43 ~~~~~~~~~~~~~~l~~~-~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a 116 (303)
T 3d02_A 43 SSTDAPQQVKIIEDLIAR-KVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEY 116 (303)
T ss_dssp SSSCHHHHHHHHHHHHHT-TCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHH
Confidence 567888888888888876 8988764 4433333344455667899999986531 111 33555677778888889
Q ss_pred HHHHHH-cCCe-EEEEEEeeC--CcccchHHHHHHHHHhCC--eEEEEeeccCCCCchhhHHHHHHHHhcCC--ccEEEE
Q 037761 87 SAVLQN-FSWH-EVVLMYEDT--NYGAGFISFLVDELQEND--IRISHMSKIPTSAEDFQISKELSKLSTMQ--TRVFIV 158 (753)
Q Consensus 87 ~~~l~~-~~w~-~vail~~d~--~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~~~~~~d~~~~l~~l~~~~--~~vIi~ 158 (753)
+++|.. .|.+ +++++.... .......+.|++.+++.+ +++... .+....+..+....+.++.+.. +++|+.
T Consensus 117 ~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 195 (303)
T 3d02_A 117 VEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS 195 (303)
T ss_dssp HHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 998866 8887 999887543 234556788889888754 544322 1121223344555666665544 454444
Q ss_pred EeChHHHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 159 HMNTALASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 159 ~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
.+...+..+++++++.|+. .+...++.
T Consensus 196 -~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 196 -FGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp -SSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred -eCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 3445667789999999975 33333443
No 111
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.48 E-value=0.0024 Score=64.95 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=109.8
Q ss_pred eeec-CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCc-HHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHH
Q 037761 4 LLLL-KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAA-APFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSL 81 (753)
Q Consensus 4 l~~~-d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~-~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~ 81 (753)
+++. ...++.........++.+ +|.+||-...+.. .......+...++|+|......+...-..++.+..+..++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~ 114 (309)
T 2fvy_A 36 LLMNDSQNDQSKQNDQIDVLLAK-GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 114 (309)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHH
Confidence 3443 456777777777788765 8998886443332 334455566789999998653221000113456778888888
Q ss_pred HHHHHHHHHHH------------cCCeEEEEEEeeC--CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHH
Q 037761 82 QVKAISAVLQN------------FSWHEVVLMYEDT--NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSK 147 (753)
Q Consensus 82 ~~~a~~~~l~~------------~~w~~vail~~d~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~ 147 (753)
.+..++++|.. .|-++++++.... .......+.|++.+++.|+.+.....+....+..+-...+.+
T Consensus 115 ~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (309)
T 2fvy_A 115 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDA 194 (309)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHH
Confidence 88989998866 7888999998643 244566788999999999765432222212223344455566
Q ss_pred HhcC----CccEEEEEeChHHHHHHHHHHHHcC
Q 037761 148 LSTM----QTRVFIVHMNTALASRLFALVAKNG 176 (753)
Q Consensus 148 l~~~----~~~vIi~~~~~~~~~~~~~~a~~~g 176 (753)
+.+. .+++|++ .+...+..+++++++.|
T Consensus 195 ~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 195 WLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 5543 4676654 45556777899999988
No 112
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.48 E-value=0.0038 Score=63.09 Aligned_cols=166 Identities=11% Similarity=0.063 Sum_probs=104.1
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHH
Q 037761 11 KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVL 90 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l 90 (753)
++..-......+.. .+|++||-...... ......+...++|+|......+... . .+..+..++...+..++++|
T Consensus 53 ~~~~~~~~~~~l~~-~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~---~~~~V~~D~~~~~~~a~~~L 126 (295)
T 3hcw_A 53 MNDLMDEVYKMIKQ-RMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKPTSDID-H---QFTHIDNDNILASENLTRHV 126 (295)
T ss_dssp HHHHHHHHHHHHHT-TCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-G---GSCEEEECHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-CCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCCCcccc-C---CceEEecCcHHHHHHHHHHH
Confidence 34444444444444 58999875332222 2444556778999999864332110 0 23345667777888889988
Q ss_pred HHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc-----CCccEEEEEeChH
Q 037761 91 QNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST-----MQTRVFIVHMNTA 163 (753)
Q Consensus 91 ~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~vIi~~~~~~ 163 (753)
...|.++++++..... ......+.+++.+++.|+.+..... ..+..+....+.++.+ ..+++|+ +.+..
T Consensus 127 ~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~ 202 (295)
T 3hcw_A 127 IEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIET---SNEREVILNYMQNLHTRLKDPNIKQAII-SLDAM 202 (295)
T ss_dssp HHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEE---CSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHH
T ss_pred HHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEec---cCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChH
Confidence 7789999999986543 3456678899999999988752221 1223333344444432 2577665 45666
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEE
Q 037761 164 LASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
.+..+++++++.|+..++.+-|.
T Consensus 203 ~A~g~~~al~~~g~~vP~di~vi 225 (295)
T 3hcw_A 203 LHLAILSVLYELNIEIPKDVMTA 225 (295)
T ss_dssp HHHHHHHHHHHTTCCTTTTEEEE
T ss_pred HHHHHHHHHHHcCCCCCCceEEE
Confidence 67889999999998766555444
No 113
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.48 E-value=0.001 Score=67.13 Aligned_cols=170 Identities=7% Similarity=-0.026 Sum_probs=109.5
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|++||-..... .......+...++|+|......+. +.+..+..++...+..++
T Consensus 46 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~ 117 (291)
T 3egc_A 46 TAEDIVREREAVGQFFER-RVDGLILAPSEG-EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAV 117 (291)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEEeCCCC-ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHH
Confidence 455677767777777665 899988544333 344555667889999988654331 224556778888889999
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeChH
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNTA 163 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~ 163 (753)
++|...|.++++++..... ......+.+.+.+++.|+.+..........+..+....+.++.+ ..+++|+ +.+..
T Consensus 118 ~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~ 196 (291)
T 3egc_A 118 EYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHR 196 (291)
T ss_dssp HHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHH
T ss_pred HHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcH
Confidence 9998889999999986543 44566788999999998764321111111112222233444443 4567666 45666
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEE
Q 037761 164 LASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
.+..+++++++.|+..++.+-|+
T Consensus 197 ~a~g~~~al~~~g~~vP~di~vv 219 (291)
T 3egc_A 197 ITEGAMQALNVLGLRYGPDVEIV 219 (291)
T ss_dssp HHHHHHHHHHHHTCCBTTTBEEE
T ss_pred HHHHHHHHHHHcCCCCCCceEEE
Confidence 67789999999998755544443
No 114
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.44 E-value=0.00063 Score=70.34 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 9 QFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 9 ~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
..++.........++. .+|+++|........ .....+...++|+|......+ +. .+..+..++...+..+++
T Consensus 99 ~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~~~~a~~ 170 (332)
T 2hsg_A 99 DQNQDKELHLLNNMLG-KQVDGIIFMSGNVTE-EHVEELKKSPVPVVLAASIES---TN---QIPSVTIDYEQAAFDAVQ 170 (332)
T ss_dssp CSHHHHHHHHHHHTSC-CSSCCEEECCSSCCH-HHHHHHTTSSSCEEEESCCCS---CT---TSCEEEECHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHh-CCCcEEEEecCCCCH-HHHHHHHhCCCCEEEEccccC---CC---CCCEEEEChHHHHHHHHH
Confidence 3455555555666664 489988864433333 333445668999998865322 11 233456777777888889
Q ss_pred HHHHcCCeEEEEEEeeC-C--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeChH
Q 037761 89 VLQNFSWHEVVLMYEDT-N--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMNTA 163 (753)
Q Consensus 89 ~l~~~~w~~vail~~d~-~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~~~ 163 (753)
+|...|.++++++.... . ......+.|.+.+++.|+.+.....+....+..+-...+.++.+. .+++|++ .+..
T Consensus 171 ~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~ 249 (332)
T 2hsg_A 171 SLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTDE 249 (332)
T ss_dssp HHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE-SSHH
T ss_pred HHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChH
Confidence 88888999999998654 2 345677889999999997653211111112233334455555443 5777664 4566
Q ss_pred HHHHHHHHHHHcCCCCCCEEEE
Q 037761 164 LASRLFALVAKNGMMSKGYTWI 185 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi 185 (753)
.+..+++++++.|+..++.+-|
T Consensus 250 ~A~g~~~al~~~G~~vP~disv 271 (332)
T 2hsg_A 250 MALGVIHGAQDRGLNVPNDLEI 271 (332)
T ss_dssp HHHHHHHHHHHTTCCHHHHCEE
T ss_pred HHHHHHHHHHHcCCCCCCCeEE
Confidence 6778999999999864443333
No 115
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.43 E-value=0.00063 Score=68.75 Aligned_cols=168 Identities=13% Similarity=0.023 Sum_probs=98.5
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 9 QFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 9 ~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
..++.........++.+ +|+++|........ .....+...++|+|......+. + +..+..++...+..+++
T Consensus 48 ~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~ 118 (290)
T 3clk_A 48 SADPEEQKHALLTAIER-PVMGILLLSIALTD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATN 118 (290)
T ss_dssp --------CHHHHHHSS-CCSEEEEESCC-----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc-CCCEEEEecccCCH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHH
Confidence 34555555566666654 89988753332222 2233455689999998643221 2 34567788888888999
Q ss_pred HHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeChHHH
Q 037761 89 VLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMNTALA 165 (753)
Q Consensus 89 ~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~~~~~ 165 (753)
+|...|.++++++... ........+.|++.+++.|+.+.....+....+..+-...+.++.+ .++++|++ .+...+
T Consensus 119 ~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a 197 (290)
T 3clk_A 119 LLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTA 197 (290)
T ss_dssp HHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHH
T ss_pred HHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHH
Confidence 9887899999999864 3345667888999999999765321111212223334445555543 45776664 455567
Q ss_pred HHHHHHHHHcCCCCCCEEEEE
Q 037761 166 SRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 166 ~~~~~~a~~~g~~~~~~~wi~ 186 (753)
..+++++++.|+..++.+-|.
T Consensus 198 ~g~~~al~~~g~~vP~di~vv 218 (290)
T 3clk_A 198 IGILNQASSFGIEVPKDLSIV 218 (290)
T ss_dssp HHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHcCCCCCCceEEE
Confidence 778999999998655444333
No 116
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.42 E-value=0.00084 Score=69.31 Aligned_cols=165 Identities=10% Similarity=0.098 Sum_probs=105.3
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|++|| ....... ..+...++|+|......+. . +..+..++...+..++
T Consensus 98 ~~~~~~~~~~~~~~l~~~-~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~ 164 (330)
T 3ctp_A 98 TDDDKEKEKTYLEVLQSH-RVAGII-ASRSQCE----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAF 164 (330)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHH
Confidence 456777777777777765 899998 4333222 2345789999998653321 2 2245667777778888
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeChHH
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMNTAL 164 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~~~~ 164 (753)
++|...|.+++++|..... ......+.|.+.+++.|+.+. ...+....+..+-...+.++.+ ..+++|++. +...
T Consensus 165 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-~d~~ 242 (330)
T 3ctp_A 165 DHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFVF-NDIA 242 (330)
T ss_dssp HHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEES-SHHH
T ss_pred HHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHH
Confidence 9888889999999987543 345667889999999998654 2222211111111222333333 357776654 4556
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEc
Q 037761 165 ASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 165 ~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
+..+++++++.|+..++.+-|.+
T Consensus 243 A~g~~~al~~~G~~vP~disvvg 265 (330)
T 3ctp_A 243 AATVMRALKKRGVSIPQEVQIIG 265 (330)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHcCCCCCCCeEEEE
Confidence 77789999999987655444443
No 117
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.42 E-value=0.0032 Score=65.20 Aligned_cols=171 Identities=11% Similarity=0.039 Sum_probs=107.0
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhc-cCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGE-KAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~-~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++.........++.+ +|+++|-....... .....+. ..++|+|......+. . +....+..++...+..+
T Consensus 96 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a 168 (340)
T 1qpz_A 96 AWNNLEKQRAYLSMMAQK-RVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMA 168 (340)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCSCCCH-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-CCCEEEEeCCCCCh-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHH
Confidence 446676666667777765 89998853322222 2333333 379999987643221 1 12335667777778888
Q ss_pred HHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeCh
Q 037761 87 SAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNT 162 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~ 162 (753)
+++|...|.++++++..... ......+.|.+.+++.|+.+.....+....+..+-...+.++.+ ..+++|++ .+.
T Consensus 169 ~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd 247 (340)
T 1qpz_A 169 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGD 247 (340)
T ss_dssp HHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSH
T ss_pred HHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCH
Confidence 89887779999999986433 34566788999999999765322222212223333445555554 35777665 455
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
..+..+++++++.|+..++.+-|.
T Consensus 248 ~~A~g~~~al~~~G~~vP~disvi 271 (340)
T 1qpz_A 248 IMAMGALCAADEMGLRVPQDVSLI 271 (340)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEE
Confidence 567778999999998755544443
No 118
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.42 E-value=0.0013 Score=66.23 Aligned_cols=168 Identities=12% Similarity=0.069 Sum_probs=104.0
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 9 QFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 9 ~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
..++.........++.+ +|+++|-....... .....+...++|+|......+ +.. +..+..++...+..+++
T Consensus 47 ~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~ 118 (287)
T 3bbl_A 47 SEDRSQIDIYRDLIRSG-NVDGFVLSSINYND-PRVQFLLKQKFPFVAFGRSNP---DWD---FAWVDIDGTAGTRQAVE 118 (287)
T ss_dssp CSSTTCCHHHHHHHHTT-CCSEEEECSCCTTC-HHHHHHHHTTCCEEEESCCST---TCC---CCEEEECHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcC-CCCEEEEeecCCCc-HHHHHHHhcCCCEEEECCcCC---CCC---CCEEEeccHHHHHHHHH
Confidence 34554445556666654 89988753332222 333445568999999864322 112 33456777778888889
Q ss_pred HHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc-C---CccEEEEEeCh
Q 037761 89 VLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST-M---QTRVFIVHMNT 162 (753)
Q Consensus 89 ~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~---~~~vIi~~~~~ 162 (753)
+|...|.++++++..... ......+.|.+.+++.|+.+.....+....+..+-...+.++.+ . .+++|+. .+.
T Consensus 119 ~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d 197 (287)
T 3bbl_A 119 YLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LND 197 (287)
T ss_dssp HHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSH
T ss_pred HHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCc
Confidence 887779999999986533 34566788999999999765321111112223334445556554 3 5676664 455
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEE
Q 037761 163 ALASRLFALVAKNGMMSKGYTWI 185 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi 185 (753)
..+..+++++++.|+..++.+-|
T Consensus 198 ~~a~g~~~al~~~G~~vP~di~v 220 (287)
T 3bbl_A 198 TMAIGAMAAARERGLTIGTDLAI 220 (287)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHHHHHHHHHcCCCCCCCEEE
Confidence 56777899999999865544433
No 119
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.41 E-value=0.0049 Score=62.65 Aligned_cols=173 Identities=11% Similarity=0.065 Sum_probs=107.4
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCc-HHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAA-APFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~-~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++....+....++.+ +|++||....+.. .......+...++|+|......+.. ...+.+..+..++...+..+
T Consensus 40 ~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a 116 (306)
T 2vk2_A 40 GQQKQENQIKAVRSFVAQ-GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLI 116 (306)
T ss_dssp CTTCHHHHHHHHHHHHHH-TCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHH
Confidence 456777777777888876 8998876443322 2334445567899999986533211 10013455677777888888
Q ss_pred HHHHHHcC---CeEEEEEEeeCC--cccchHHHHHHHHHhCCe-EEEEeeccCCCCchhhHHHHHHHHhc-----CCccE
Q 037761 87 SAVLQNFS---WHEVVLMYEDTN--YGAGFISFLVDELQENDI-RISHMSKIPTSAEDFQISKELSKLST-----MQTRV 155 (753)
Q Consensus 87 ~~~l~~~~---w~~vail~~d~~--~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~v 155 (753)
+++|...| .++++++..... ......+.|++.+++.|. .+..... . ..+..+-...+.++.+ ..+++
T Consensus 117 ~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~~~~~~a 194 (306)
T 2vk2_A 117 GDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQS-G-DFTRSKGKEVMESFIKAENNGKNICM 194 (306)
T ss_dssp HHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTTEEEEEEEE-C-TTCHHHHHHHHHHHHHHTTTTTTCCE
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCCeEEEEecc-C-CCcHHHHHHHHHHHHHhCCCCCCeeE
Confidence 88886665 789999986432 345567889999999885 3332211 1 1223333344444433 35676
Q ss_pred EEEEeChHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 156 FIVHMNTALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 156 Ii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
|++ .+...+..+++++++.|+..++.+-|+
T Consensus 195 i~~-~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 195 VYA-HNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp EEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred EEE-CCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 654 455567778999999998655444333
No 120
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.0044 Score=63.67 Aligned_cols=171 Identities=11% Similarity=0.059 Sum_probs=108.8
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcH-HHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAA-PFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~-~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++.........++.+ +|++||....+... ......+...++|+|......+. .+.+..+.+++...+..+
T Consensus 44 ~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a 117 (325)
T 2x7x_A 44 AGDDNSKQAEDVHYFMDE-GVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSV 117 (325)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHH
Confidence 456777777788888865 89998875443322 23344455689999998643221 123445667788888888
Q ss_pred HHHHHHc--CCeEEEEEEeeCC--cccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEE
Q 037761 87 SAVLQNF--SWHEVVLMYEDTN--YGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVH 159 (753)
Q Consensus 87 ~~~l~~~--~w~~vail~~d~~--~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~ 159 (753)
+++|... |.++++++..... ......+.|.+.+++. |+.+.... .. ..+..+-...+.++.+ ..+++|++.
T Consensus 118 ~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~-~~-~~~~~~~~~~~~~ll~~~~~~~aI~~~ 195 (325)
T 2x7x_A 118 GNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDKA-DA-AWERGPAEIEMDSMLRRHPKIDAVYAH 195 (325)
T ss_dssp HHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEEE-EC-TTSHHHHHHHHHHHHHHCSCCCEEEES
T ss_pred HHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeee-cC-CCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 8988654 8999999986432 3456678899999998 88765322 11 2223333444555443 357776644
Q ss_pred eChHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 160 MNTALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
+...+..+++++++.|+ +.+...++.+
T Consensus 196 -nd~~A~g~~~al~~~Gi-p~dv~vig~D 222 (325)
T 2x7x_A 196 -NDRIAPGAYQAAKMAGR-EKEMIFVGID 222 (325)
T ss_dssp -STTHHHHHHHHHHHTTC-TTSSEEEEEE
T ss_pred -CCchHHHHHHHHHHcCC-CCCeEEEEEC
Confidence 44456778899999996 3333344443
No 121
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.39 E-value=0.012 Score=58.84 Aligned_cols=170 Identities=10% Similarity=0.076 Sum_probs=104.5
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|+++|- |..+.........+...++|+|......+ +. +.+..+..++...+..+
T Consensus 39 ~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a 112 (283)
T 2ioy_A 39 SQNDSSKELSNVEDLIQQ-KVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMA 112 (283)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHH
Confidence 456777777777888865 8988764 43333322334455678999998864221 11 12334566777778888
Q ss_pred HHHHHHc-C-CeEEEEEEeeCC--cccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEE
Q 037761 87 SAVLQNF-S-WHEVVLMYEDTN--YGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVH 159 (753)
Q Consensus 87 ~~~l~~~-~-w~~vail~~d~~--~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~ 159 (753)
+++|... | -++++++..... ......+.+++.+++. |+.+.....- ..+..+-...+.++.+. .+++|+ +
T Consensus 113 ~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~ai~-~ 189 (283)
T 2ioy_A 113 AEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAA--DFDRSKGLSVMENILQAQPKIDAVF-A 189 (283)
T ss_dssp HHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSCCCEEE-E
T ss_pred HHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeeccC--CCCHHHHHHHHHHHHHhCCCccEEE-E
Confidence 8888655 5 899999986433 2345677899999998 8876543221 12233334445555433 455543 4
Q ss_pred eChHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 160 MNTALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
.+...+..+++++++.|+ .+...++.+
T Consensus 190 ~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 190 QNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp SSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred CCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 455567778999999997 343344433
No 122
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.39 E-value=0.0047 Score=62.26 Aligned_cols=162 Identities=10% Similarity=0.086 Sum_probs=108.9
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|++||- +............+...++|+|......+.. +.+..+..++...+..+
T Consensus 46 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~~ 119 (293)
T 3l6u_A 46 SQNSRISEREQILEFVHL-KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD-----AVVSSITSNNQMIGEQL 119 (293)
T ss_dssp CSSCHHHHHHHHHHHHHT-TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCCT-----TCSEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCCC-----cceeEEecCHHHHHHHH
Confidence 556777777888888876 8888775 3334433355566677899999986543321 23456678888888889
Q ss_pred HHHHHH-c-CCe-----EEEEEEeeC--CcccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhcC--Ccc
Q 037761 87 SAVLQN-F-SWH-----EVVLMYEDT--NYGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLSTM--QTR 154 (753)
Q Consensus 87 ~~~l~~-~-~w~-----~vail~~d~--~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~ 154 (753)
+++|.. + |-+ +++++.... .......+.|++.+++. |+.+..... . ..+..+-...+.++.+. .++
T Consensus 120 ~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~ 197 (293)
T 3l6u_A 120 ASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVS-G-NYDPVTSERVMRQVIDSGIPFD 197 (293)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE-C-TTCHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeecc-C-CCCHHHHHHHHHHHHHhCCCCC
Confidence 998866 5 666 999998543 24456678899999999 988765432 2 22334444555555543 456
Q ss_pred EEEEEeChHHHHHHHHHHHHcCCC
Q 037761 155 VFIVHMNTALASRLFALVAKNGMM 178 (753)
Q Consensus 155 vIi~~~~~~~~~~~~~~a~~~g~~ 178 (753)
+|+ +.+...+..+++++++.|+.
T Consensus 198 ai~-~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 198 AVY-CHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp EEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred EEE-ECCchHHHHHHHHHHhCCCC
Confidence 554 44555677899999999974
No 123
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.37 E-value=0.0025 Score=64.76 Aligned_cols=167 Identities=13% Similarity=0.053 Sum_probs=106.0
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHH-HHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAP-FLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~-av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|++||-........ .+..+.+ ++|+|......+. . +-.+..++...+..+
T Consensus 53 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~----~---~~~V~~D~~~~g~~a 122 (303)
T 3kke_A 53 IDAPPRGTQQLSRLVSEG-RVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPG----R---VGSVILDDQKGGGIA 122 (303)
T ss_dssp CCSTTHHHHHHHHHHHSC-SSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTT----C---CCEEEECHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCC----C---CCEEEECcHHHHHHH
Confidence 445666666666666655 899887543333333 4444444 9999998754332 2 233567778888888
Q ss_pred HHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHH-----hcC--CccEEE
Q 037761 87 SAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKL-----STM--QTRVFI 157 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l-----~~~--~~~vIi 157 (753)
+++|...|-++++++..... ......+.|++.+++.|+.+..........+..+-...+.++ .+. .+++|+
T Consensus 123 ~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~ 202 (303)
T 3kke_A 123 TEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV 202 (303)
T ss_dssp HHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE
T ss_pred HHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE
Confidence 99998889999999986433 345667889999999997653211111122233444455555 443 466655
Q ss_pred EEeChHHHHHHHHHHHHcCCCCCCEEEE
Q 037761 158 VHMNTALASRLFALVAKNGMMSKGYTWI 185 (753)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~~~~~wi 185 (753)
+ .+...+..+++++++.|+..++.+-|
T Consensus 203 ~-~nd~~A~g~~~al~~~G~~vP~di~v 229 (303)
T 3kke_A 203 V-ASVNAAVGALSTALRLGLRVPEDLSI 229 (303)
T ss_dssp E-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred E-CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 4 45556777899999999875544433
No 124
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.34 E-value=0.0016 Score=66.14 Aligned_cols=162 Identities=9% Similarity=-0.045 Sum_probs=107.3
Q ss_pred ChHHHHHHHHHHHhcCCeEEEE-cCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHH
Q 037761 11 KDCGKLILAVDLLKKFQVQAII-GPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAV 89 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~avi-G~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~ 89 (753)
++.........++.+ +|++|| .|..+.........+. .++|+|......+.......+.+..+.+++...+..++++
T Consensus 48 ~~~~~~~~~~~~~~~-~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~ 125 (304)
T 3o1i_D 48 NKSRQEQQLALCTQW-GANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKY 125 (304)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHH
Confidence 788888888888887 788877 4444442233334455 8999999854433212222345666778888888899999
Q ss_pred HHHcC-----CeEEEEEEeeC--CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh-cCCccEEEEEeC
Q 037761 90 LQNFS-----WHEVVLMYEDT--NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS-TMQTRVFIVHMN 161 (753)
Q Consensus 90 l~~~~-----w~~vail~~d~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vIi~~~~ 161 (753)
|...| -++++++.... .......+.+++.+++.|+.+.... ....+..+-...+.++. ...+++ + +++
T Consensus 126 l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~ 201 (304)
T 3o1i_D 126 LAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGS 201 (304)
T ss_dssp HHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EEC
T ss_pred HHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-Eec
Confidence 98888 89999997543 3456678899999999998876543 22222333333344333 346787 4 556
Q ss_pred hHHHHHHHHHHHHcCCC
Q 037761 162 TALASRLFALVAKNGMM 178 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~ 178 (753)
...+..+++++++.|+.
T Consensus 202 d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 202 AVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHHHHHHTTTTCG
T ss_pred CcchHHHHHHHHhcCCC
Confidence 67778899999999974
No 125
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.29 E-value=0.00067 Score=68.08 Aligned_cols=163 Identities=9% Similarity=-0.003 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHH
Q 037761 11 KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVL 90 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l 90 (753)
++..-......++++ +|++|| -........+. . .++|+|......+ .+.. +..+..++...+..++++|
T Consensus 45 ~~~~~~~~~~~l~~~-~vdgiI-~~~~~~~~~~~---~-~~iPvV~~~~~~~--~~~~---~~~V~~D~~~~g~~a~~~L 113 (280)
T 3gyb_A 45 TSQAGTDPITSALSM-RPDGII-IAQDIPDFTVP---D-SLPPFVIAGTRIT--QAST---HDSVANDDFRGAEIATKHL 113 (280)
T ss_dssp SSCSSSCHHHHHHTT-CCSEEE-EESCC------------CCCEEEESCCCS--SSCS---TTEEEECHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhC-CCCEEE-ecCCCChhhHh---h-cCCCEEEECCCCC--CCCC---CCEEEechHHHHHHHHHHH
Confidence 544444555566655 899988 32222222222 2 8999999865431 1122 2335677888888999999
Q ss_pred HHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeChHHHHHH
Q 037761 91 QNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNTALASRL 168 (753)
Q Consensus 91 ~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~~~~~~ 168 (753)
...|.++++++...........+.|.+.+++.|+.+.... +....+..+-...+.++.+ ..+++|+ +.+...+..+
T Consensus 114 ~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~ 191 (280)
T 3gyb_A 114 IDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGA 191 (280)
T ss_dssp HHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHH
T ss_pred HHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHH
Confidence 8889999999997544466677889999999998765433 2222233344445555543 3466665 4456667789
Q ss_pred HHHHHHcCCCCCCEEEEE
Q 037761 169 FALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 169 ~~~a~~~g~~~~~~~wi~ 186 (753)
++++++.|+..++.+-|.
T Consensus 192 ~~al~~~g~~vP~di~vv 209 (280)
T 3gyb_A 192 LGAARELGLRVPEDLSII 209 (280)
T ss_dssp HHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCCeeEEE
Confidence 999999998655444333
No 126
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=97.23 E-value=0.00082 Score=69.12 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHh----cCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeec-c-----------cceee
Q 037761 414 IFNATLEIVEEK----LGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVA-S-----------RTDYV 477 (753)
Q Consensus 414 ll~~ia~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~-~-----------r~~~~ 477 (753)
+.+.|++.|+++ +| +++++.+. +...+.+..|.+|++|+++....... . ..+.+
T Consensus 48 ~~~~la~~l~~~~~~~~g--~~v~v~~~--------~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~ 117 (327)
T 4ddd_A 48 IGGSICRFIASDYGKDNK--IICSISST--------TGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNL 117 (327)
T ss_dssp HHHHHHHHHHHHHGGGTS--EEEEEECC--------CCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTE
T ss_pred HHHHHHHHHHhccCCCCC--eEEEEEec--------CcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcch
Confidence 444455544447 66 45555543 25678899999999999986544221 1 12334
Q ss_pred eccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCC
Q 037761 478 EFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPT 557 (753)
Q Consensus 478 ~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~ 557 (753)
.+..+++.....+++++.. +
T Consensus 118 ~~v~~~~~~~~~lvv~~ds------------------------------------------------------------~ 137 (327)
T 4ddd_A 118 RMLASLHKEYLTIVVKKSS------------------------------------------------------------N 137 (327)
T ss_dssp EEEEEEEEEEEEEEEETTS------------------------------------------------------------S
T ss_pred hehhccCCccEEEEEECCC------------------------------------------------------------C
Confidence 4555667777788888664 3
Q ss_pred cCChhHhhhcCCeEEEe-cCchHH----HHHHHhhCCCCC--ceecCCCHHHHHHHHhcCCCCCCeeEEEecc
Q 037761 558 FADLKKLRTESHFVGFQ-SGSFVE----DFLVKQLNFSRN--QTRPLSNFGEYKEALSNGSRKGGVSAIFEEI 623 (753)
Q Consensus 558 i~s~~dL~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~ 623 (753)
|+|++||+ |+++++. .++..+ .+++ ..+.... ..+.+.+..+.+.+|..|+ +|+++...
T Consensus 138 i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~-~~Gi~~~~v~~v~~~g~~~a~~aL~~G~----vDa~~~~~ 203 (327)
T 4ddd_A 138 ISVIDDIK--GKRVNIGSPGTGVRVAMLKLLG-EKGWTKKDFSVMAELKSSEQAQALCDNK----IDVMVDVI 203 (327)
T ss_dssp CCSGGGGT--TSEEECCSTTSHHHHHHHHHHH-HHTCCGGGCSEEECCCHHHHHHHHHTTS----CSBEEEEE
T ss_pred CCCHHHhC--CCEEecCCCCccHHHHHHHHHH-HcCCChHhcchhhcCCHHHHHHHHHcCC----CCEEEEcc
Confidence 99999994 8899884 455332 2333 3444332 3467889999999999999 99988754
No 127
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.20 E-value=0.0028 Score=64.11 Aligned_cols=160 Identities=12% Similarity=0.126 Sum_probs=101.5
Q ss_pred HHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCeEE
Q 037761 19 AVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEV 98 (753)
Q Consensus 19 a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v 98 (753)
..+++.+.+|++||-....... .....+...++|+|......+ . +.+-.+..++...+..++++|...|-+++
T Consensus 57 ~~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I 129 (294)
T 3qk7_A 57 LIHLVETRRVDALIVAHTQPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRI 129 (294)
T ss_dssp HHHHHHHTCCSEEEECSCCSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHcCCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceE
Confidence 4444545588887753332222 344556778999999865321 1 12345677888888889999988899999
Q ss_pred EEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeChHHHHHHHHHHHH
Q 037761 99 VLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNTALASRLFALVAK 174 (753)
Q Consensus 99 ail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~~~~~~~~~a~~ 174 (753)
+++..... ......+.+.+.+++.|+.+.....+....+..+-...+.++.+ ..+++|+. ++...+..+++++++
T Consensus 130 ~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~ 208 (294)
T 3qk7_A 130 AFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDK 208 (294)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHH
Confidence 99987543 34456788999999999764211111111223333444555543 35676654 455667789999999
Q ss_pred cCCCCCCEEEEE
Q 037761 175 NGMMSKGYTWIV 186 (753)
Q Consensus 175 ~g~~~~~~~wi~ 186 (753)
.|+..++.+-|.
T Consensus 209 ~G~~vP~di~vi 220 (294)
T 3qk7_A 209 AGLLGGEGISLI 220 (294)
T ss_dssp TTCSSTTSCEEE
T ss_pred cCCCCCCceEEE
Confidence 998766544443
No 128
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.19 E-value=0.0061 Score=61.33 Aligned_cols=161 Identities=12% Similarity=0.110 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcC
Q 037761 15 KLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFS 94 (753)
Q Consensus 15 a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~ 94 (753)
-......++.+ +|++||-.........+. .+.. ++|+|......+ + +.+..+..++...+..++++|...|
T Consensus 55 ~~~~~~~l~~~-~vdgiIi~~~~~~~~~~~-~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G 125 (289)
T 3k9c_A 55 EKVAVQALMRE-RCEAAILLGTRFDTDELG-ALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELG 125 (289)
T ss_dssp HHHHHHHHTTT-TEEEEEEETCCCCHHHHH-HHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CCCEEEEECCCCCHHHHH-HHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCC
Confidence 44555566554 999988544333333333 3445 999999865332 1 2234567788888888999998889
Q ss_pred CeEEEEEEeeCC-cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeChHHHHHHHHH
Q 037761 95 WHEVVLMYEDTN-YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNTALASRLFAL 171 (753)
Q Consensus 95 w~~vail~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~~~~~~~~~ 171 (753)
.++++++..... ......+.|++.+++.|+.+... .+....+..+-...+.++.+ ..+++|+. .+...+..++++
T Consensus 126 ~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~a 203 (289)
T 3k9c_A 126 HRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVVA-FNDRCATGVLDL 203 (289)
T ss_dssp CCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEEE-CChHHHHHHHHH
Confidence 999999986543 34556788999999999763221 12222234444455566554 35666544 455567789999
Q ss_pred HHHcCCCCCCEEEEE
Q 037761 172 VAKNGMMSKGYTWIV 186 (753)
Q Consensus 172 a~~~g~~~~~~~wi~ 186 (753)
+++.|+..++.+-|.
T Consensus 204 l~~~g~~vP~di~vi 218 (289)
T 3k9c_A 204 LVRSGRDVPADISVV 218 (289)
T ss_dssp HHHTTCCTTTTCEEE
T ss_pred HHHcCCCCCCceEEE
Confidence 999998765544444
No 129
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.16 E-value=0.011 Score=61.63 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=109.5
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +|+++|-....... .....+...++|+|...... .. +....+..++...+..++
T Consensus 108 ~~~~~~~~~~~~~~l~~~-~vdGiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~ 179 (355)
T 3e3m_A 108 TAYSPEREEQLVETMLRR-RPEAMVLSYDGHTE-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMT 179 (355)
T ss_dssp CTTCHHHHHHHHHHHHHT-CCSEEEEECSCCCH-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEeCCCCCH-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHH
Confidence 456777766777777765 88887753332222 44455677899999874221 11 223456778888888899
Q ss_pred HHHHHcCCeEEEEEEeeCCc---ccchHHHHHHHHHhCCeEEEEeecc-CCCCchhhHHHHHHHHhc--CCccEEEEEeC
Q 037761 88 AVLQNFSWHEVVLMYEDTNY---GAGFISFLVDELQENDIRISHMSKI-PTSAEDFQISKELSKLST--MQTRVFIVHMN 161 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~~---g~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~ 161 (753)
++|...|.++++++...... .....+.|.+.+++.|+.+.....+ ....+..+-...+.++.+ ..+++|++ .+
T Consensus 180 ~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~n 258 (355)
T 3e3m_A 180 NALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-VS 258 (355)
T ss_dssp HHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-SS
T ss_pred HHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CC
Confidence 99988899999999975432 4567788999999999764321111 111122333344444433 45676554 45
Q ss_pred hHHHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 162 TALASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
...+..+++++++.|+..++.+-|.+
T Consensus 259 D~~A~g~~~al~~~G~~vP~disvig 284 (355)
T 3e3m_A 259 DMPAFGLLSRLKSIGVAVPEQVSVVG 284 (355)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTCEEEC
T ss_pred hHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 56677789999999987665554443
No 130
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.15 E-value=0.0035 Score=65.03 Aligned_cols=171 Identities=8% Similarity=0.072 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +|++||-....... .....+...++|+|..+... .. +....+..++...+..++
T Consensus 106 ~~~~~~~~~~~i~~l~~~-~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~ 177 (344)
T 3kjx_A 106 TDYLPEKEEKVLYEMLSW-RPSGVIIAGLEHSE-AARAMLDAAGIPVVEIMDSD---GK---PVDAMVGISHRRAGREMA 177 (344)
T ss_dssp CTTCHHHHHHHHHHHHTT-CCSEEEEECSCCCH-HHHHHHHHCSSCEEEEEECS---SC---CSSEEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEECCCCCH-HHHHHHHhCCCCEEEEeCCC---CC---CCCCEEEECcHHHHHHHH
Confidence 456777777777777765 88887753322222 44555677899999874211 11 223456778888888899
Q ss_pred HHHHHcCCeEEEEEEeeC---CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeCh
Q 037761 88 AVLQNFSWHEVVLMYEDT---NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNT 162 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~---~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~ 162 (753)
++|...|.++++++.... .......+.|.+.+++.|+.+.....+....+..+-...+.++.+ ..+++|+ +++.
T Consensus 178 ~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd 256 (344)
T 3kjx_A 178 QAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSND 256 (344)
T ss_dssp HHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSH
T ss_pred HHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCH
Confidence 988888999999998653 234556788999999999765433323222222333344444433 3577666 4456
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
..+..+++++++.|+..++.+-|.+
T Consensus 257 ~~A~g~~~al~~~g~~vP~disvvg 281 (344)
T 3kjx_A 257 MIAAGGLLYLLEQGIDIPGQIGLAG 281 (344)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEE
Confidence 6677889999999987665555543
No 131
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.14 E-value=0.0021 Score=65.20 Aligned_cols=171 Identities=10% Similarity=0.030 Sum_probs=107.7
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcC-CCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGP-QIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~-~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
+..++..-......++.+ +|++||-. ..+.........+...++|+|......+.. +.+..+.+++...+..+
T Consensus 51 ~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a 124 (304)
T 3gbv_A 51 DPYDYNSFVATSQAVIEE-QPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFA 124 (304)
T ss_dssp CSSCHHHHHHHHHHHHTT-CCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHH
Confidence 456777777777777775 89987753 333334455556677799999987533221 12455678888888999
Q ss_pred HHHHHHcCC--eEEEEEEeeC------CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEE
Q 037761 87 SAVLQNFSW--HEVVLMYEDT------NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVF 156 (753)
Q Consensus 87 ~~~l~~~~w--~~vail~~d~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vI 156 (753)
+++|...|. ++++++.... .......+.+++.+++.|+.+..........+..+-...+.++.+ ..+++|
T Consensus 125 ~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 204 (304)
T 3gbv_A 125 ARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHG 204 (304)
T ss_dssp HHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 999988777 9999998432 234566788999999887543221111111112223333444332 357877
Q ss_pred EEEeChHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 157 IVHMNTALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 157 i~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
+...+. +..+++++++.|+ .+...++.+
T Consensus 205 ~~~~d~--a~g~~~al~~~g~--~di~vig~d 232 (304)
T 3gbv_A 205 ITFNSK--VYIIGEYLQQRRK--SDFSLIGYD 232 (304)
T ss_dssp EESSSC--THHHHHHHHHTTC--CSCEEEEES
T ss_pred EEcCcc--hHHHHHHHHHcCC--CCcEEEEeC
Confidence 766555 6779999999997 444444444
No 132
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.13 E-value=0.0047 Score=62.68 Aligned_cols=179 Identities=10% Similarity=0.009 Sum_probs=108.4
Q ss_pred eeecCCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHH
Q 037761 4 LLLLKQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQ 82 (753)
Q Consensus 4 l~~~d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~ 82 (753)
+++.+..++..-.+....++.+ +|++||- |..+.........+...++|+|......+.......+.+..+..++...
T Consensus 35 ~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~ 113 (306)
T 8abp_A 35 VIKIAVPDGEKTLNAIDSLAAS-GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKI 113 (306)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-TCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHH
Confidence 4444556888888888888887 7998774 4444444445556777899999987432222111111234456677777
Q ss_pred HHHHHHHHH-HcCCe-----EEEEEE-eeC--CcccchHHHHHHHHHhCCe---EEEEeeccCCCCchhhHHHHHHHHhc
Q 037761 83 VKAISAVLQ-NFSWH-----EVVLMY-EDT--NYGAGFISFLVDELQENDI---RISHMSKIPTSAEDFQISKELSKLST 150 (753)
Q Consensus 83 ~~a~~~~l~-~~~w~-----~vail~-~d~--~~g~~~~~~~~~~~~~~g~---~v~~~~~~~~~~~~~d~~~~l~~l~~ 150 (753)
+..++++|. ..|-+ +++++. ... .......+.+.+.+++.|. ++..... . ..+..+-...+.++.+
T Consensus 114 g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~ 191 (306)
T 8abp_A 114 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT-K-SNDIPGAFDAANSMLV 191 (306)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC-S-SSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeecc-C-CCChHHHHHHHHHHHH
Confidence 777777663 43443 888886 332 2345567889999998774 2332221 1 2234455556666655
Q ss_pred CC--ccEE-EEEeChHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 151 MQ--TRVF-IVHMNTALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 151 ~~--~~vI-i~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
.. ++++ +++++...+..+++++++.|+.. +.+-|.
T Consensus 192 ~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v-~di~vv 229 (306)
T 8abp_A 192 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGI 229 (306)
T ss_dssp TCTTCSEEEEECSSHHHHHHHHHHHHHTTCCG-GGEEEE
T ss_pred hCCCCceEEEEeCCcHHHHHHHHHHHHcCCCC-CceEEE
Confidence 44 4553 44445556777999999999854 444333
No 133
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=97.11 E-value=0.0026 Score=65.25 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=63.8
Q ss_pred cCChhHhhhcCCeEEEec-CchHHH---HHHHhhCCC-CCceecCCCHHHHHHHHhcC----CCCCCeeEEEeccccHHH
Q 037761 558 FADLKKLRTESHFVGFQS-GSFVED---FLVKQLNFS-RNQTRPLSNFGEYKEALSNG----SRKGGVSAIFEEIPYIKV 628 (753)
Q Consensus 558 i~s~~dL~~~~~~~~~~~-~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g----~~~~~~~a~~~~~~~~~~ 628 (753)
|+|++|| +++|+.. ++.... .+.+..+.. ..+++.+.+..+...+|.+| + +|+++.+......
T Consensus 112 i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~----vDa~~~ep~~~~~ 183 (321)
T 2x7q_A 112 VTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEG----SDAFMWEYFTSKK 183 (321)
T ss_dssp CSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCC----CSEEEEEHHHHHH
T ss_pred CCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccc----eEEEEecCccchh
Confidence 9999999 6899986 554332 222233443 24666777888999999999 8 9997654333332
Q ss_pred HHhcCCCCcEEeCcccccC-ceEEEEcCC----CC-----CchHhHHHHHHhhhcc
Q 037761 629 FLKKYSSKYTTAGPIYRTD-GLGFAFAKD----SP-----LVSHFSQAILLVRENQ 674 (753)
Q Consensus 629 ~~~~~~~~l~~~~~~~~~~-~~~~~~~k~----s~-----l~~~~n~~i~~l~~~G 674 (753)
..+. ..+.++....... ..+++++++ .| +.+.+.+.+..+.++.
T Consensus 184 ~~~~--g~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~p 237 (321)
T 2x7q_A 184 YYDN--HEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEHV 237 (321)
T ss_dssp HHHT--TSEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hccC--CceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHCH
Confidence 2222 2355544332222 246677654 34 5555666666666554
No 134
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.11 E-value=0.0029 Score=63.91 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=109.3
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcC-CCCC---cHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGP-QIPA---AAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQV 83 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~-~~s~---~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~ 83 (753)
...++..-......++.+ +|+++|-. ..+. ........+...++|+|......+.. . +..+..++...+
T Consensus 53 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~---~~~V~~d~~~~~ 125 (298)
T 3tb6_A 53 TNNNPDNERRGLENLLSQ-HIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL---A---APSFTLDDVKGG 125 (298)
T ss_dssp CTTCHHHHHHHHHHHHHT-CCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC---S---SCEEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHHC-CCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCC---C---CCEEEeCcHHHH
Confidence 456777777777788865 89887753 3322 34455566777899999986533221 2 233567788888
Q ss_pred HHHHHHHHHcCCeEEEEEEeeCC-cccchHHHHHHHHHhCCeEEEEeeccCCCCch--hhHHHHHHHHhc--CC--ccEE
Q 037761 84 KAISAVLQNFSWHEVVLMYEDTN-YGAGFISFLVDELQENDIRISHMSKIPTSAED--FQISKELSKLST--MQ--TRVF 156 (753)
Q Consensus 84 ~a~~~~l~~~~w~~vail~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~--~d~~~~l~~l~~--~~--~~vI 156 (753)
..++++|...|.++++++..... ......+.+.+.+++.|+.+.....+...... ......+.++.+ .. +++|
T Consensus 126 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai 205 (298)
T 3tb6_A 126 MMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAI 205 (298)
T ss_dssp HHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEE
T ss_pred HHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEE
Confidence 89999998889999999986443 34456788999999998764322111111001 111333444433 23 6666
Q ss_pred EEEeChHHHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 157 IVHMNTALASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 157 i~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
+. .+...+..+++++++.|+..++.+-|.+
T Consensus 206 ~~-~~d~~a~g~~~al~~~g~~vP~di~vvg 235 (298)
T 3tb6_A 206 LC-YNDEIALKVIDMLREMDLKVPEDMSIVG 235 (298)
T ss_dssp EC-SSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred EE-eCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 54 4555677899999999987655554443
No 135
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.10 E-value=0.013 Score=58.34 Aligned_cols=167 Identities=11% Similarity=0.092 Sum_probs=107.1
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +|++||-..... ......+...++|+|..+...+ +.. +..+..++...+..++
T Consensus 45 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~ 115 (276)
T 3jy6_A 45 ANADIEREKTLLRAIGSR-GFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAAT 115 (276)
T ss_dssp CTTCHHHHHHHHHHHHTT-TCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHH
Confidence 445666666666666655 899887544443 4555566778999999864332 112 2346778888889999
Q ss_pred HHHHHcCCeEEEEEEeeCC-c--ccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeChH
Q 037761 88 AVLQNFSWHEVVLMYEDTN-Y--GAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMNTA 163 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~-~--g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~~~ 163 (753)
++|...|-++++++..... . .....+.|++.+++.+. +.... .............+.+.. ..+++|+ +.+..
T Consensus 116 ~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~ 191 (276)
T 3jy6_A 116 TAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDVDV-LEVSE--SSYNHSEVHQRLTQLITQNDQKTVAF-ALKER 191 (276)
T ss_dssp HHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-EEECS--SSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHH
T ss_pred HHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCc-EEEec--cccCCcHHHHHHHHHHhcCCCCcEEE-EeCcH
Confidence 9998889999999997653 2 24566778888887754 22111 100122344445555543 4566655 45666
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 164 LASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
.+..+++++++.|+..++.+-|.+
T Consensus 192 ~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 192 WLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCcEEEEE
Confidence 677899999999987665554444
No 136
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.10 E-value=0.013 Score=59.19 Aligned_cols=158 Identities=10% Similarity=0.133 Sum_probs=103.4
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCC---C---CCCCceEEEecCcHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS---P---TEHPFFIRVTQNDSL 81 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~---~---~~~~~~fr~~p~~~~ 81 (753)
++.++.+.....++|.++ +|++||.... .....+.. ...++|+|..+..++... . .....+..+. +..
T Consensus 44 ~~~~~~~~~~~~~~l~~~-~vDgII~~~~-~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~ 117 (295)
T 3lft_A 44 SEGDQSKVATMSKQLVAN-GNDLVVGIAT-PAAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHN 117 (295)
T ss_dssp CTTCHHHHHHHHHHHTTS-SCSEEEEESH-HHHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECC
T ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEECCc-HHHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCc
Confidence 678898888888888765 8999887432 22222322 257899998765443221 1 1112444443 333
Q ss_pred HHHHHHHHHHHc--CCeEEEEEEeeCCc-ccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEE
Q 037761 82 QVKAISAVLQNF--SWHEVVLMYEDTNY-GAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIV 158 (753)
Q Consensus 82 ~~~a~~~~l~~~--~w~~vail~~d~~~-g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~ 158 (753)
.+...+++|... |.+++++++..... +....+.+++++++.|+++....... ..+....+.++.. ++++|++
T Consensus 118 ~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~----~~~~~~~~~~l~~-~~dai~~ 192 (295)
T 3lft_A 118 PAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPS----TNEIASTVTVMTS-KVDAIWV 192 (295)
T ss_dssp CHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESS----GGGHHHHHHHHTT-TCSEEEE
T ss_pred cHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCC----HHHHHHHHHHHHh-cCCEEEE
Confidence 466777888776 89999999976543 45567889999999999886554322 3467777787764 7898887
Q ss_pred EeChHHHHHHHHHHHHcCC
Q 037761 159 HMNTALASRLFALVAKNGM 177 (753)
Q Consensus 159 ~~~~~~~~~~~~~a~~~g~ 177 (753)
..+. .+...++++.+.+.
T Consensus 193 ~~D~-~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 193 PIDN-TIASGFPTVVSSNQ 210 (295)
T ss_dssp CSCH-HHHHTHHHHHHHTT
T ss_pred CCch-hHHHHHHHHHHHHH
Confidence 6554 34445667777764
No 137
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.04 E-value=0.018 Score=58.63 Aligned_cols=163 Identities=9% Similarity=0.041 Sum_probs=106.2
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|++||- |............+...++|+|......+. .. ....+..++...+..+
T Consensus 40 ~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~--~~~~V~~D~~~~g~~a 113 (313)
T 3m9w_A 40 ANGNEETQMSQIENMINR-GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---AD--IDFYISFDNEKVGELQ 113 (313)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SC--CSEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CC--ceEEEecCHHHHHHHH
Confidence 556777777778888876 8888774 444444345566677889999998754322 11 1145667788888889
Q ss_pred HHHHH-HcCCeEEEEEEeeCC--cccchHHHHHHHHHhC----CeEEEEeeccCCCCchhhHHHHHHHHhc---CCccEE
Q 037761 87 SAVLQ-NFSWHEVVLMYEDTN--YGAGFISFLVDELQEN----DIRISHMSKIPTSAEDFQISKELSKLST---MQTRVF 156 (753)
Q Consensus 87 ~~~l~-~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~----g~~v~~~~~~~~~~~~~d~~~~l~~l~~---~~~~vI 156 (753)
+++|. ..|-++++++..... ......+.+++.+++. ++.+..... ....+..+-...+.++.+ ..+++|
T Consensus 114 ~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai 192 (313)
T 3m9w_A 114 AKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAV 192 (313)
T ss_dssp HHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEE
Confidence 99886 899999999985433 3345567888888876 677654432 111123333444444433 356655
Q ss_pred EEEeChHHHHHHHHHHHHcCCC
Q 037761 157 IVHMNTALASRLFALVAKNGMM 178 (753)
Q Consensus 157 i~~~~~~~~~~~~~~a~~~g~~ 178 (753)
+. .+...+..+++++++.|+.
T Consensus 193 ~~-~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 193 VA-SNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp EE-SSHHHHHHHHHHHHTTTCT
T ss_pred EE-CCCchHHHHHHHHHHcCCC
Confidence 44 4555677889999999975
No 138
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=96.99 E-value=0.0075 Score=61.15 Aligned_cols=144 Identities=10% Similarity=0.185 Sum_probs=96.0
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCC------CCCCCceEEEecCcHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS------PTEHPFFIRVTQNDSL 81 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~------~~~~~~~fr~~p~~~~ 81 (753)
++.++.+.....++|.++ +|++||.... .....+.. ...++|+|..+...+... ....+.+..+.- ..
T Consensus 51 ~~~~~~~~~~~~~~l~~~-~vDgII~~~~-~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~ 124 (302)
T 2qh8_A 51 AQGNPAIAVQIARQFVGE-NPDVLVGIAT-PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LS 124 (302)
T ss_dssp CTTCHHHHHHHHHHHHHT-CCSEEEEESH-HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CC
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEECCh-HHHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC--Cc
Confidence 678899999999888865 8999887432 22233333 367999998765443211 111234555542 22
Q ss_pred HHHHHHHHHHHc--CCeEEEEEEeeCC-cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEE
Q 037761 82 QVKAISAVLQNF--SWHEVVLMYEDTN-YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIV 158 (753)
Q Consensus 82 ~~~a~~~~l~~~--~w~~vail~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~ 158 (753)
.+...++++... |.+++++++.... .+....+.+++++++.|+++...... +..+....+.++.. ++++|++
T Consensus 125 ~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~ 199 (302)
T 2qh8_A 125 PVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYA 199 (302)
T ss_dssp CHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEE
T ss_pred CHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEE
Confidence 356667888666 9999999997543 35666788999999999988655332 23567777888764 7898887
Q ss_pred EeCh
Q 037761 159 HMNT 162 (753)
Q Consensus 159 ~~~~ 162 (753)
..+.
T Consensus 200 ~~D~ 203 (302)
T 2qh8_A 200 LIDN 203 (302)
T ss_dssp CSCH
T ss_pred CCcH
Confidence 6554
No 139
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=96.96 E-value=0.012 Score=61.11 Aligned_cols=168 Identities=12% Similarity=0.016 Sum_probs=102.3
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++.........++.+ +|+++|-....... .....+...++|+|......+. ... +..+..++...+..++
T Consensus 104 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~--~~~---~~~V~~D~~~~~~~a~ 176 (348)
T 3bil_A 104 SNEDATTMSGSLEFLTSH-GVDGIICVPNEECA-NQLEDLQKQGMPVVLVDRELPG--DST---IPTATSNPQPGIAAAV 176 (348)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSCEEECCCGGGH-HHHHHHHHC-CCEEEESSCCSC--C-C---CCEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEeCCCCCh-HHHHHHHhCCCCEEEEcccCCC--CCC---CCEEEeChHHHHHHHH
Confidence 445666666666677665 89888764333222 3334455689999998653221 012 2235566777778888
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCC-ccEEEEEeChHH
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQ-TRVFIVHMNTAL 164 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIi~~~~~~~ 164 (753)
++|...|.+++++|..... ......+.|.+.+++.|+..... +....+..+-...+.++.+.. + .+++++...
T Consensus 177 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~--ai~~~nD~~ 252 (348)
T 3bil_A 177 ELLAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK--TLFAGDSMM 252 (348)
T ss_dssp HHHHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS--EEEESSHHH
T ss_pred HHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC--EEEEcChHH
Confidence 9888889999999986533 34556788999999998732111 111222333334555554433 4 344556666
Q ss_pred HHHHHHHHHHcCCCCCCEEEEE
Q 037761 165 ASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 165 ~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
+..+++++++.|+..++.+-|+
T Consensus 253 A~g~~~al~~~G~~vP~disvv 274 (348)
T 3bil_A 253 TIGVIEACHKAGLVIGKDVSVI 274 (348)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHHHcCCCCCCCeEEE
Confidence 7789999999998655544443
No 140
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=96.96 E-value=0.01 Score=61.26 Aligned_cols=164 Identities=11% Similarity=0.031 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEee-cCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISF-FETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~-~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
.++..-......++.+ +|++||-+..+.........+...++|.|.. ....+.......+.+..+.+++...+..+++
T Consensus 88 ~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~ 166 (342)
T 1jx6_A 88 ADIKQQSLSLMEALKS-KSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELAT 166 (342)
T ss_dssp CCHHHHHHHHHHHHHT-TCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHH
Confidence 4677777777778775 8999887544433233344455678999876 3222211000112344567788888888999
Q ss_pred HHHH-cC-CeEEEEEEeeCC-cccchHHHHHHHHHhCCe-EEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeCh
Q 037761 89 VLQN-FS-WHEVVLMYEDTN-YGAGFISFLVDELQENDI-RISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNT 162 (753)
Q Consensus 89 ~l~~-~~-w~~vail~~d~~-~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~ 162 (753)
+|.. +| .++++++..... ......+.|.+.+++.|+ ..... +....+..+-...+.++.+ ..+++|++ .+.
T Consensus 167 ~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd 243 (342)
T 1jx6_A 167 EFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIYA-CST 243 (342)
T ss_dssp HHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEEE-SSH
T ss_pred HHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEEE-CCC
Confidence 8866 47 999999986433 334556788889998886 33222 2222223333344455443 34676654 455
Q ss_pred HHHHHHHHHHHHcCC
Q 037761 163 ALASRLFALVAKNGM 177 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~ 177 (753)
..+..+++++++.|+
T Consensus 244 ~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 244 DVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHcCC
Confidence 567778999999997
No 141
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.95 E-value=0.012 Score=58.67 Aligned_cols=150 Identities=12% Similarity=0.030 Sum_probs=96.0
Q ss_pred CeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCC
Q 037761 27 QVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTN 106 (753)
Q Consensus 27 ~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~ 106 (753)
+|+++|-.........+ ..+...++|+|......+. +.+..+..++...+..++++|...|.++++++..+..
T Consensus 57 ~vdgiI~~~~~~~~~~~-~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 129 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEI-EKFAERGHSIVVLDRTTEH------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK 129 (277)
T ss_dssp TCSEEEEECTTSCHHHH-HHHHHTTCEEEESSSCCCS------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTT
T ss_pred cccEEEEecCCCCHHHH-HHHHhcCCCEEEEecCCCC------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence 56666643222223333 3445689999998643221 2345667777788888889888789999999986533
Q ss_pred --cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC---CccEEEEEeChHHHHHHHHHHHHcCCCCCC
Q 037761 107 --YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM---QTRVFIVHMNTALASRLFALVAKNGMMSKG 181 (753)
Q Consensus 107 --~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~ 181 (753)
......+.+.+.+++.|+.+. .. ....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 130 ~~~~~~R~~gf~~~l~~~g~~~~-~~--~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 205 (277)
T 3cs3_A 130 GYDSQERLAVSTRELTRFGIPYE-II--QGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGK 205 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEE-EE--ECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTT
T ss_pred CccHHHHHHHHHHHHHHcCCCee-EE--eCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCC
Confidence 345567889999999998765 21 1122333444556666544 456655 44555677789999999986555
Q ss_pred EEEEEc
Q 037761 182 YTWIVT 187 (753)
Q Consensus 182 ~~wi~~ 187 (753)
.+.|++
T Consensus 206 di~vvg 211 (277)
T 3cs3_A 206 DIRIIG 211 (277)
T ss_dssp TEEEEC
T ss_pred cEEEEE
Confidence 555554
No 142
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=96.88 E-value=0.011 Score=61.04 Aligned_cols=170 Identities=12% Similarity=0.056 Sum_probs=106.3
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +|+++|-....... .....+...++|+|......+ . +.. .+..++...+..++
T Consensus 100 ~~~~~~~~~~~~~~l~~~-~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~----~--~~~-~V~~D~~~~~~~a~ 170 (339)
T 3h5o_A 100 SHYDAGQELQLLRAYLQH-RPDGVLITGLSHAE-PFERILSQHALPVVYMMDLAD----D--GRC-CVGFSQEDAGAAIT 170 (339)
T ss_dssp CTTCHHHHHHHHHHHHTT-CCSEEEEECSCCCT-THHHHHHHTTCCEEEEESCCS----S--SCC-EEECCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHcC-CCCEEEEeCCCCCH-HHHHHHhcCCCCEEEEeecCC----C--CCe-EEEECHHHHHHHHH
Confidence 456677666777777765 88887642222222 344556778999998753211 1 122 56778888888899
Q ss_pred HHHHHcCCeEEEEEEeeCC-cccchHHHHHHHHHhCCeEEEEee-ccCCCCchhhHHHHHHHHhc--CCccEEEEEeChH
Q 037761 88 AVLQNFSWHEVVLMYEDTN-YGAGFISFLVDELQENDIRISHMS-KIPTSAEDFQISKELSKLST--MQTRVFIVHMNTA 163 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~ 163 (753)
++|...|.++++++..... ......+.+.+.+++.|+...... ......+..+-...+.++.+ ..+++|++ ++..
T Consensus 171 ~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~ 249 (339)
T 3h5o_A 171 RHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFC-CNDD 249 (339)
T ss_dssp HHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHH
T ss_pred HHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChH
Confidence 9998889999999986532 334566789999999987211000 11111222333344455443 35676654 5566
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 164 LASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
.+..+++++++.|+..++.+-|.+
T Consensus 250 ~A~g~~~al~~~G~~vP~disvvg 273 (339)
T 3h5o_A 250 LAIGALARSQQLGIAVPERLAIAG 273 (339)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEE
Confidence 677889999999987665554443
No 143
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.88 E-value=0.0066 Score=61.00 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=100.1
Q ss_pred cCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEee
Q 037761 25 KFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYED 104 (753)
Q Consensus 25 ~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d 104 (753)
..+|+++|-.........+.. +...++|+|......+ .+..+..++...+..++++|...|.++++++...
T Consensus 66 ~~~vdgiIi~~~~~~~~~~~~-~~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~ 136 (289)
T 3g85_A 66 ENSFDAAIIANISNYDLEYLN-KASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTE 136 (289)
T ss_dssp TTCCSEEEESSCCHHHHHHHH-HCCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECC
T ss_pred ccCCCEEEEecCCcccHHHHH-hccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 458888886444433333333 3467999999875322 2345677888888999999988899999999865
Q ss_pred CC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC--CccEEEEEeChHHHHHHHHHHHHcCCCCC
Q 037761 105 TN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM--QTRVFIVHMNTALASRLFALVAKNGMMSK 180 (753)
Q Consensus 105 ~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIi~~~~~~~~~~~~~~a~~~g~~~~ 180 (753)
.. ......+.+.+.+++.|+.+.....+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..+
T Consensus 137 ~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 215 (289)
T 3g85_A 137 SLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIP 215 (289)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCC
Confidence 33 345667889999999997653221112122334445556665543 466665 4566667789999999998765
Q ss_pred CEEEEEc
Q 037761 181 GYTWIVT 187 (753)
Q Consensus 181 ~~~wi~~ 187 (753)
+.+-|.+
T Consensus 216 ~di~vig 222 (289)
T 3g85_A 216 DDIEIVA 222 (289)
T ss_dssp TTCEEEE
T ss_pred CceEEEE
Confidence 5444443
No 144
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=96.88 E-value=0.0083 Score=59.89 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=105.6
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCC-CCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFET-SPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~-~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|+++|-.. . ....+...++|+|..... .+. +.+ .+..++...+..+
T Consensus 49 ~~~~~~~~~~~~~~l~~~-~vdgiIi~~-~-----~~~~~~~~~iPvV~~~~~~~~~------~~~-~V~~D~~~~g~~a 114 (277)
T 3hs3_A 49 TNSDVKKYQNAIINFENN-NVDGIITSA-F-----TIPPNFHLNTPLVMYDSANIND------DIV-RIVSNNTKGGKES 114 (277)
T ss_dssp SSCCHHHHHHHHHHHHHT-TCSEEEEEC-C-----CCCTTCCCSSCEEEESCCCCCS------SSE-EEEECHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEcc-h-----HHHHHHhCCCCEEEEcccccCC------CCE-EEEEChHHHHHHH
Confidence 456666666666666665 888877432 1 122356779999998654 221 234 6778888888888
Q ss_pred HHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeCh
Q 037761 87 SAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNT 162 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~ 162 (753)
+++|. .|.++++++..... ......+.+++.+++.|+.+... .+. + +.+ ...+.++.+ ..+++|+. .+.
T Consensus 115 ~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~-~--~~~-~~~~~~~l~~~~~~~ai~~-~~d 187 (277)
T 3hs3_A 115 IKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETP-E--NNP-YISAQSALNKSNQFDAIIT-VND 187 (277)
T ss_dssp HHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECC-S--SCH-HHHHHHHHHTGGGCSEEEC-SSH
T ss_pred HHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Ccc-C--Cch-HHHHHHHHcCCCCCCEEEE-CCH
Confidence 99888 99999999986533 44566788999999999987654 332 2 112 444444443 35666543 455
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 163 ALASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
..+..+++++++.|+..++.+-|.+
T Consensus 188 ~~A~g~~~al~~~g~~vP~di~vig 212 (277)
T 3hs3_A 188 LYAAEIIKEAKRRNLKIPDDFQLVG 212 (277)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEe
Confidence 5677889999999987665554443
No 145
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=96.80 E-value=0.0075 Score=60.36 Aligned_cols=100 Identities=12% Similarity=-0.039 Sum_probs=59.7
Q ss_pred hHhhhcCCeEEEe-cCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEecc-ccHHHHHhcCCCCcEE
Q 037761 562 KKLRTESHFVGFQ-SGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEI-PYIKVFLKKYSSKYTT 639 (753)
Q Consensus 562 ~dL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~ 639 (753)
+|| +|+++++. .++.....++. -..+.++. +.+..+...++.+|+ +|+.+... .... +.+. ++.+
T Consensus 99 ~DL--kGK~Iav~~~~s~~~~ll~~--~l~~~~~~-~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~~---g~~~ 165 (280)
T 1zbm_A 99 ISL--DGKRIAVPGRYTTANLLLKL--AVEDFEPV-EMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YADY---GLKC 165 (280)
T ss_dssp CCC--TTCEEEESCTTSHHHHHHHH--HCSSCEEE-ECCGGGHHHHHHTTS----SSEEEECSGGGGT-GGGG---TCEE
T ss_pred hhc--CCCEEEecCCCcHHHHHHHH--HhccCceE-ecCHHHHHHHHHcCC----CCEEEEechHHhH-HHhc---CCeE
Confidence 678 59999996 44444443543 22233444 346678999999999 99988554 3333 2222 2332
Q ss_pred eCcc-------c-ccCc-eEEEEcCC-CC-CchHhHHHHHHhhhcc
Q 037761 640 AGPI-------Y-RTDG-LGFAFAKD-SP-LVSHFSQAILLVRENQ 674 (753)
Q Consensus 640 ~~~~-------~-~~~~-~~~~~~k~-s~-l~~~~n~~i~~l~~~G 674 (753)
+... . ...+ .+++++++ +| +.+.|.+++.+..+..
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~ 211 (280)
T 1zbm_A 166 VLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAFA 211 (280)
T ss_dssp EEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHHH
Confidence 2210 0 1112 35778888 67 8888888887766554
No 146
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=96.79 E-value=0.03 Score=54.87 Aligned_cols=163 Identities=10% Similarity=0.030 Sum_probs=102.3
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +|+++|-...+.... ..+...++|+|...... +.+..+..++...+..++
T Consensus 40 ~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~ 107 (255)
T 1byk_A 40 SQFSPQLVAEHLGVLKRR-NIDGVVLFGFTGITE---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILM 107 (255)
T ss_dssp CTTCHHHHHHHHHHHHTT-TCCEEEEECCTTCCT---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhc-CCCEEEEecCccccH---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHH
Confidence 345666655666666654 888877432221111 23455689999876421 123456677778888899
Q ss_pred HHHHHcCCeEEEEEEee--C-CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHH
Q 037761 88 AVLQNFSWHEVVLMYED--T-NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTAL 164 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d--~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~ 164 (753)
++|...|.++++++... + .......+.+.+.+++.|+.+.. +....+..+-...+.++.+.++++|++ .+...
T Consensus 108 ~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~ 183 (255)
T 1byk_A 108 QRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALLC-ATDTL 183 (255)
T ss_dssp HHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHH
T ss_pred HHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEEE-eChHH
Confidence 99888899999999854 2 34566778899999999976432 121222333334455554556777654 45556
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 165 ASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 165 ~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
+..+++++++.|+ .+...++.+
T Consensus 184 A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 184 ALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHHHHHHHHcCC--CcEEEEEeC
Confidence 7789999999997 343344433
No 147
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=96.77 E-value=0.063 Score=53.15 Aligned_cols=161 Identities=11% Similarity=0.099 Sum_probs=97.2
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|+++|- |..+.........+...++|+|......+. . +....+..++...+..+
T Consensus 39 ~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~~---~--~~~~~V~~D~~~~g~~a 112 (271)
T 2dri_A 39 SQNNPAKELANVQDLTVR-GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK---G--EVVSHIASDNVLGGKIA 112 (271)
T ss_dssp CTTCHHHHHHHHHHHTTT-TEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS---S--CCSEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCCC---C--ceeEEEecChHHHHHHH
Confidence 445666655666666654 8999774 333332223334456679999998643221 1 11223566777777888
Q ss_pred HHHHHHc--CCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEe
Q 037761 87 SAVLQNF--SWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHM 160 (753)
Q Consensus 87 ~~~l~~~--~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~ 160 (753)
+++|... |-++++++..... ......+.+++.+++.|+.+..... . ..+..+-...+.++.+ ..+++|+ +.
T Consensus 113 ~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~ 189 (271)
T 2dri_A 113 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQP-A-DFDRIKGLNVMQNLLTAHPDVQAVF-AQ 189 (271)
T ss_dssp HHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEE-C-TTCHHHHHHHHHHHHHHCTTCCEEE-ES
T ss_pred HHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEecC-C-CCCHHHHHHHHHHHHHhCCCccEEE-EC
Confidence 8888555 5689999985432 2345677899999999987653321 1 1222233334444433 3456544 44
Q ss_pred ChHHHHHHHHHHHHcCC
Q 037761 161 NTALASRLFALVAKNGM 177 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~ 177 (753)
+...+..+++++++.|+
T Consensus 190 nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 190 NDEMALGALRALQTAGK 206 (271)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHcCC
Confidence 55567789999999997
No 148
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=96.76 E-value=0.016 Score=58.75 Aligned_cols=164 Identities=9% Similarity=-0.008 Sum_probs=100.2
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAV 89 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~ 89 (753)
.++..-......+. ..+|++||-....... .....+...++|+|...... ... .+..+..++...+..++++
T Consensus 67 ~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~~---~~~~V~~D~~~~g~~a~~~ 138 (305)
T 3huu_A 67 NSGDLYHEVKTMIQ-SKSVDGFILLYSLKDD-PIEHLLNEFKVPYLIVGKSL---NYE---NIIHIDNDNIDAAYQLTQY 138 (305)
T ss_dssp SHHHHHHHHHHHHH-TTCCSEEEESSCBTTC-HHHHHHHHTTCCEEEESCCC---SST---TCCEEECCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH-hCCCCEEEEeCCcCCc-HHHHHHHHcCCCEEEECCCC---ccc---CCcEEEeCHHHHHHHHHHH
Confidence 33444444444444 4589997743222222 34455667899999986533 111 2334677888888889999
Q ss_pred HHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHH-hc--CCccEEEEEeChHH
Q 037761 90 LQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKL-ST--MQTRVFIVHMNTAL 164 (753)
Q Consensus 90 l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l-~~--~~~~vIi~~~~~~~ 164 (753)
|...|-++++++..... ......+.+++.+++.|+.+.. .+.... +. -...+.++ .+ ..+++|+ +.+...
T Consensus 139 L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~~-~~-~~~~~~~~~l~~~~~~~ai~-~~nd~~ 213 (305)
T 3huu_A 139 LYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKSM-ND-LRDFIKQYCIDASHMPSVII-TSDVML 213 (305)
T ss_dssp HHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECSH-HH-HHHHC--------CCCSEEE-ESSHHH
T ss_pred HHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecCc-HH-HHHHHHHhhhcCCCCCCEEE-ECChHH
Confidence 98889999999987544 3455678899999999976543 111111 11 33344444 33 4567665 455666
Q ss_pred HHHHHHHHHHcCCCCCCEEEEE
Q 037761 165 ASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 165 ~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
+..+++++++.|+..++.+-|.
T Consensus 214 A~g~~~al~~~g~~vP~di~vi 235 (305)
T 3huu_A 214 NMQLLNVLYEYQLRIPEDIQTA 235 (305)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHcCCCCCcceEEE
Confidence 7789999999998755444333
No 149
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.73 E-value=0.015 Score=56.43 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=85.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcH--------HHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 16 LILAVDLLKKFQVQAIIGPQIPAAA--------PFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 16 ~~~a~~Li~~~~V~aviG~~~s~~~--------~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
.+++++|.. .++++|+-+..|+.. .....+.+..++|+++. +.+++
T Consensus 56 ~~aa~~L~~-ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~ 109 (240)
T 3ixl_A 56 VDHARRLQK-QGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVL 109 (240)
T ss_dssp HHHHHHHHH-TTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHH
T ss_pred HHHHHHhcc-CCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHH
Confidence 445566654 499998876555443 34455666778998873 46888
Q ss_pred HHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC-------CchhhHHHHHHH-H-hcCCccEEEE
Q 037761 88 AVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS-------AEDFQISKELSK-L-STMQTRVFIV 158 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~-l-~~~~~~vIi~ 158 (753)
+.++..|.+||+++.. |.....+.+++.+++.|++++........ .+...+...+.+ + ...++|+|++
T Consensus 110 ~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL 186 (240)
T 3ixl_A 110 NGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILL 186 (240)
T ss_dssp HHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEE
T ss_pred HHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEE
Confidence 8888899999999984 88888899999999999998776554321 123466667777 6 6678888888
Q ss_pred EeChH
Q 037761 159 HMNTA 163 (753)
Q Consensus 159 ~~~~~ 163 (753)
.|..-
T Consensus 187 ~CT~l 191 (240)
T 3ixl_A 187 SSGGL 191 (240)
T ss_dssp ECTTS
T ss_pred eCCCC
Confidence 87643
No 150
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=96.73 E-value=0.0063 Score=64.86 Aligned_cols=175 Identities=11% Similarity=0.119 Sum_probs=102.8
Q ss_pred hcCCccceEEEecCCCCCCCCCChHHHHHHHHcCc----ccEEEee--ee--eecc---cceeeecccc--ccccceEEE
Q 037761 425 KLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKK----FDAVVGD--IS--IVAS---RTDYVEFTLP--YSESGVTML 491 (753)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~Di~~~~--~~--~t~~---r~~~~~fs~p--~~~~~~~~~ 491 (753)
+.|+. +++++.. .+|..++..|..|+ +|++... +. .+.. |.+..++..+ +...+.+++
T Consensus 59 ~~Gl~-~Ve~~~~--------~~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 129 (417)
T 2g29_A 59 KYGMP-DVEVLKQ--------ASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQ 129 (417)
T ss_dssp HTTCT-TCEEEEC--------SCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEE
T ss_pred HcCCC-eeEEEec--------CCHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEEeccCCeEEE
Confidence 56750 4455553 37999999999999 9999753 22 2222 2223333332 234556777
Q ss_pred EecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCc-CCh-------hH
Q 037761 492 VPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTF-ADL-------KK 563 (753)
Q Consensus 492 v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i-~s~-------~d 563 (753)
+++..... .| +++ +|
T Consensus 130 v~~~~~~~---------------------------------------------------------~i~~s~~~l~~~~~d 152 (417)
T 2g29_A 130 LGNNYKDL---------------------------------------------------------KVGTDAAPLKEAFAK 152 (417)
T ss_dssp ECGGGGGG---------------------------------------------------------CCCSCCTTHHHHHHT
T ss_pred Eecchhhc---------------------------------------------------------cccCCHHHHHHHHHh
Confidence 77654210 25 665 77
Q ss_pred hhhcCCeEEEe-cCchHHHHHHH---hhCCC---CCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCC
Q 037761 564 LRTESHFVGFQ-SGSFVEDFLVK---QLNFS---RNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSK 636 (753)
Q Consensus 564 L~~~~~~~~~~-~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~ 636 (753)
| .|+++++. .++..+.+++. ..+.. +.+++.+ ...+++.+|.+|+ +|+++...+......++....
T Consensus 153 L--kGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~----vDa~~~~eP~~~~~~~~g~~~ 225 (417)
T 2g29_A 153 V--TDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNA----MESFCVGEPWPLQTVNQGVGY 225 (417)
T ss_dssp S--SSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHHTSCE
T ss_pred c--CCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCC----CCEEEeCCCHHHHHHHcCCCE
Confidence 8 59999997 46655433331 23443 2345555 4578999999999 999998888776666554212
Q ss_pred cEEe-CcccccCc-eEEEEcCC----CC-----CchHhHHHHHHhhh
Q 037761 637 YTTA-GPIYRTDG-LGFAFAKD----SP-----LVSHFSQAILLVRE 672 (753)
Q Consensus 637 l~~~-~~~~~~~~-~~~~~~k~----s~-----l~~~~n~~i~~l~~ 672 (753)
.... .+.....+ .+++++++ .| +.+.+.++...+.+
T Consensus 226 ~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 226 QALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp EEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2222 22222223 56777754 44 44456666666765
No 151
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=96.70 E-value=0.01 Score=59.12 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHH-hhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVE-LGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~-i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ ++++||-... ...... .+...++|+|......+.. . .+..++...+..+
T Consensus 46 ~~~~~~~~~~~~~~l~~~-~~dgiIi~~~---~~~~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a 113 (277)
T 3e61_A 46 SDNDIKKAQGYLATFVSH-NCTGMISTAF---NENIIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQ 113 (277)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEECGG---GHHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEecC---ChHHHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHH
Confidence 455677666777777765 8888775332 233344 5667899999987543211 1 5667778888889
Q ss_pred HHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh-cCCccEEEEEeChH
Q 037761 87 SAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS-TMQTRVFIVHMNTA 163 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vIi~~~~~~ 163 (753)
+++|...|.++++++..... ......+.|.+.+++.|+.+.. .... ..+..+-... +. ...+++|++. +..
T Consensus 114 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~~-~~~~~~~~~~---l~~~~~~~ai~~~-~d~ 187 (277)
T 3e61_A 114 AEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM-LEAT-LLDNDKKFID---LIKELSIDSIICS-NDL 187 (277)
T ss_dssp HHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE-EEGG-GGGSHHHHHH---HHHHHTCCEEEES-SHH
T ss_pred HHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc-eecC-CCCHHHHHHH---hhcCCCCCEEEEC-CcH
Confidence 99998889999999986433 4456678899999999987654 1111 1111122222 33 2467766544 555
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEc
Q 037761 164 LASRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 164 ~~~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
.+..+++++++.|+..++.+-|.+
T Consensus 188 ~a~g~~~al~~~g~~vP~di~vig 211 (277)
T 3e61_A 188 LAINVLGIVQRYHFKVPAEIQIIG 211 (277)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHcCCCCCCceEEEe
Confidence 677799999999987655555544
No 152
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=96.62 E-value=0.16 Score=50.65 Aligned_cols=175 Identities=13% Similarity=0.038 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCC-C-CCCCceEEEecCcHHHHHH
Q 037761 9 QFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALS-P-TEHPFFIRVTQNDSLQVKA 85 (753)
Q Consensus 9 ~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~-~-~~~~~~fr~~p~~~~~~~a 85 (753)
..++..-......++.+ +|+++|- +..+.........+...++|+|......+... . .+-+..-.+..++...+..
T Consensus 42 ~~~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~ 120 (288)
T 1gud_A 42 EGDFQSQLQLFEDLSNK-NYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAK 120 (288)
T ss_dssp TTCHHHHHHHHHHHHTS-SEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHH
Confidence 45666666666677765 8999774 33333222233344568999998864221100 0 0001103466777777888
Q ss_pred HHHHHHHc-C--CeEEEEEEeeCCc--ccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEE
Q 037761 86 ISAVLQNF-S--WHEVVLMYEDTNY--GAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFI 157 (753)
Q Consensus 86 ~~~~l~~~-~--w~~vail~~d~~~--g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi 157 (753)
++++|... | -++++++...... .....+.+++.+++. |+.+..... . ..+..+-...+.++.+ ..+++|+
T Consensus 121 a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~~~ai~ 198 (288)
T 1gud_A 121 GASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQP-A-DWDRIKALDVATNVLQRNPNIKAIY 198 (288)
T ss_dssp HHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE-C-TTCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEeec-C-CccHHHHHHHHHHHHHhCCCceEEE
Confidence 88888665 8 8999999865332 345567899999988 887654321 1 1222333334444433 3456555
Q ss_pred EEeChHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 037761 158 VHMNTALASRLFALVAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 188 (753)
+ .+...+..+++++++.|+. .+...++.+
T Consensus 199 ~-~nD~~A~g~~~al~~~G~~-~dv~vvGfD 227 (288)
T 1gud_A 199 C-ANDTMAMGVAQAVANAGKT-GKVLVVGTD 227 (288)
T ss_dssp E-SSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred E-CCCchHHHHHHHHHhcCCC-CCeEEEEeC
Confidence 4 4555677899999999974 344444444
No 153
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=96.51 E-value=0.037 Score=56.82 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHH
Q 037761 12 DCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQ 91 (753)
Q Consensus 12 ~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~ 91 (753)
+..-......++.+ +|+++|-... ...+...++|+|......+. .. +..+..++...+..++++|.
T Consensus 105 ~~~~~~~~~~l~~~-~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~D~~~~~~~a~~~L~ 170 (333)
T 3jvd_A 105 VQAQDVVMESLISI-QAAGIIHVPV-------VGSIAPEGIPMVQLTRGELG---PG---FPRVLCDDEAGFFQLTESVL 170 (333)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECCC-------TTCCC-CCSCEEEECC-------CC---SCEEEECHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhC-CCCEEEEcch-------HHHHhhCCCCEEEECccCCC---CC---CCEEEEChHHHHHHHHHHHH
Confidence 55555556666665 8888875333 33456789999998653321 12 23456777788888999998
Q ss_pred HcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCC-ccEEEEEeChHHHHHH
Q 037761 92 NFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQ-TRVFIVHMNTALASRL 168 (753)
Q Consensus 92 ~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIi~~~~~~~~~~~ 168 (753)
..|-++++++..... ......+.+.+.+++.|+..... .. ..+..+-...+.++.+.. +++|++ .+...+..+
T Consensus 171 ~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~-~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~ 246 (333)
T 3jvd_A 171 GGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFH--FG-HYSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGV 246 (333)
T ss_dssp CSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--EC-CSSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHH
T ss_pred HCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCCEEEe--cC-CCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHH
Confidence 889999999997533 34566788999999999872211 11 122334444555554433 777664 455567778
Q ss_pred HHHHHHcCCCCCCEEEEE
Q 037761 169 FALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 169 ~~~a~~~g~~~~~~~wi~ 186 (753)
++++++.|+..++.+-|.
T Consensus 247 ~~al~~~G~~vP~disvi 264 (333)
T 3jvd_A 247 MRAFTRLNVRVPHDVVIG 264 (333)
T ss_dssp HHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCCceEEE
Confidence 999999998765544443
No 154
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=96.49 E-value=0.048 Score=55.58 Aligned_cols=164 Identities=6% Similarity=-0.009 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccC-CccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH----HH
Q 037761 14 GKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKA-QVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI----SA 88 (753)
Q Consensus 14 ~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~-~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~----~~ 88 (753)
......+.|+++ ++.+||..... ...++..++..+ ++|++......+ + .+.+-.... +..++..+ +.
T Consensus 50 ~~~~~l~~l~~~-~~dgIi~~~~~-~~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~ 121 (318)
T 2fqx_A 50 EYVPSLSAFADE-NMGLVVACGSF-LVEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAA 121 (318)
T ss_dssp GHHHHHHHHHHT-TCSEEEEESTT-THHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEECChh-HHHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHH
Confidence 334556666665 89998874322 233455565544 899988754221 0 122322333 44444444 46
Q ss_pred HHHHcCC-eEEEEEEee-CCcccchHHHHHHHHHhCCeEEEEeeccCCCC-chhhHHHHHHHHhcCCccEEEEEeChHHH
Q 037761 89 VLQNFSW-HEVVLMYED-TNYGAGFISFLVDELQENDIRISHMSKIPTSA-EDFQISKELSKLSTMQTRVFIVHMNTALA 165 (753)
Q Consensus 89 ~l~~~~w-~~vail~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~~~~~~vIi~~~~~~~~ 165 (753)
+|...|. ++|++|... ..........|++.+++.|..+.....+.... +...-.....++.+.++|+|+.... ..+
T Consensus 122 ~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d-~~a 200 (318)
T 2fqx_A 122 LKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAG-GTG 200 (318)
T ss_dssp HHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECG-GGH
T ss_pred HHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCC-CCc
Confidence 6666676 899999854 23345567888899988775432222222121 1122333445555567998776544 345
Q ss_pred HHHHHHHHHcCCCCCCEEEEEc
Q 037761 166 SRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 166 ~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
...++++++.|+. ++-+++.+
T Consensus 201 ~Gv~~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 201 NGVIKEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp HHHHHHHHHHHHT-TCCCEEEE
T ss_pred hHHHHHHHhhhhc-cCCcEEEE
Confidence 6678889998876 55555554
No 155
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=96.38 E-value=0.04 Score=56.42 Aligned_cols=168 Identities=7% Similarity=-0.014 Sum_probs=106.2
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEc-CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIG-PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG-~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
...++..-......++.+ +|.+||- |..+.........+...++|+|......+.. . +....+..++...+..+
T Consensus 41 ~~~~~~~~~~~i~~~~~~-~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a 115 (330)
T 3uug_A 41 ADDDIPNQLSQIENMVTK-GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQ 115 (330)
T ss_dssp CTTCHHHHHHHHHHHHHH-TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHH
Confidence 567888888888888887 7998774 4444344555666778899999987543321 1 12234566778888888
Q ss_pred HHHHHH-------cCCeEEEEEEeeCC--cccchHHHHHHHHHhC---C-eEEEEee-----ccCCCCchhhHHHHHHHH
Q 037761 87 SAVLQN-------FSWHEVVLMYEDTN--YGAGFISFLVDELQEN---D-IRISHMS-----KIPTSAEDFQISKELSKL 148 (753)
Q Consensus 87 ~~~l~~-------~~w~~vail~~d~~--~g~~~~~~~~~~~~~~---g-~~v~~~~-----~~~~~~~~~d~~~~l~~l 148 (753)
+++|.. .|.++++++..... ......+.+++.+++. | +.+.... ......+..+-...+.++
T Consensus 116 ~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (330)
T 3uug_A 116 ATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNL 195 (330)
T ss_dssp HHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHH
Confidence 888866 68889999975433 3345567888888876 3 5543211 001111122333334444
Q ss_pred hc-----CCccEEEEEeChHHHHHHHHHHHHcCCCCCC
Q 037761 149 ST-----MQTRVFIVHMNTALASRLFALVAKNGMMSKG 181 (753)
Q Consensus 149 ~~-----~~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~ 181 (753)
.+ ..+++|+ +.+...+..+++++++.|+..++
T Consensus 196 l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~ 232 (330)
T 3uug_A 196 LSAYYTDAKVDAVL-SPYDGLSIGIISSLKGVGYGTKD 232 (330)
T ss_dssp HHHHCSSSCCCEEE-CSSHHHHHHHHHHHHHTTCSSSS
T ss_pred HHhcCCCCCeEEEE-ECCCchHHHHHHHHHHcCCCCCC
Confidence 33 4566554 34555677899999999986554
No 156
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.35 E-value=0.0025 Score=64.68 Aligned_cols=168 Identities=5% Similarity=0.010 Sum_probs=103.3
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
...++..-......++.+ +|++||-....... ....+...++|+|..+...+.. .. +..+..++...+..++
T Consensus 52 ~~~~~~~~~~~~~~l~~~-~vdGiIi~~~~~~~--~~~~~~~~~iPvV~~~~~~~~~--~~---~~~V~~D~~~~g~~a~ 123 (301)
T 3miz_A 52 TGGSSEREVEIWKMFQSH-RIDGVLYVTMYRRI--VDPESGDVSIPTVMINCRPQTR--EL---LPSIEPDDYQGARDLT 123 (301)
T ss_dssp CTTCHHHHHHHHHHHHHT-TCSEEEEEEEEEEE--CCCCCTTCCCCEEEEEEECSST--TS---SCEEEECHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEecCCccH--HHHHHHhCCCCEEEECCCCCCC--CC---CCEEeeChHHHHHHHH
Confidence 456676666666767665 88887742222111 3345567899999876433211 02 3345777888888899
Q ss_pred HHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEE----Eee---ccCCCCchhhHHHHHHHHhc--CCccEE
Q 037761 88 AVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRIS----HMS---KIPTSAEDFQISKELSKLST--MQTRVF 156 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~----~~~---~~~~~~~~~d~~~~l~~l~~--~~~~vI 156 (753)
++|...|.++++++..... ......+.+++.+++.|+.+. ... .+...... ....+.++.+ ..+++|
T Consensus 124 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai 201 (301)
T 3miz_A 124 RYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNY--VFAAATEMLKQDDRPTAI 201 (301)
T ss_dssp HHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEEC--HHHHHHHHHTSTTCCSEE
T ss_pred HHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccH--HHHHHHHHHcCCCCCcEE
Confidence 9998889999999996544 344567889999999886531 111 12211111 1133444433 356766
Q ss_pred EEEeChHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 157 IVHMNTALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 157 i~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
+. .+...+..+++++++.|+..++.+-|.
T Consensus 202 ~~-~~d~~A~g~~~al~~~g~~vP~di~vi 230 (301)
T 3miz_A 202 MS-GNDEMAIQIYIAAMALGLRIPQDVSIV 230 (301)
T ss_dssp EE-SSHHHHHHHHHHHHTTTCCHHHHCEEE
T ss_pred EE-CCHHHHHHHHHHHHHcCCCCCCCeeEE
Confidence 54 455567789999999998654444444
No 157
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=96.34 E-value=0.063 Score=55.47 Aligned_cols=163 Identities=11% Similarity=0.032 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHhcCCeEEEEc--CCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHH
Q 037761 12 DCGKLILAVDLLKKFQVQAIIG--PQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAV 89 (753)
Q Consensus 12 ~~~a~~~a~~Li~~~~V~aviG--~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~ 89 (753)
+..-......++.+ +|+++|- +..+ .......+...++|+|...... +...+ .+..++...+..++++
T Consensus 104 ~~~~~~~l~~l~~~-~vdGiIi~~~~~~--~~~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~ 173 (349)
T 1jye_A 104 VEACKTAVHNLLAQ-RVSGLIINYPLDD--QDAIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEH 173 (349)
T ss_dssp HHHHHHHHHHHHTT-TCSCEEEESCCCH--HHHHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEecCCCC--hhHHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHH
Confidence 44445556666654 7888764 3222 2222233456799999876421 11222 3456666777778888
Q ss_pred HHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeChHHH
Q 037761 90 LQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNTALA 165 (753)
Q Consensus 90 l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~~~ 165 (753)
|...|.+++++|..... ......+.|++.+++.|+.+.... .. ..+..+-...+.++.+ ..+++|++ .+...+
T Consensus 174 L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~-~~-~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A 250 (349)
T 1jye_A 174 LVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER-EG-DWSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMA 250 (349)
T ss_dssp HHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEE-EC-CSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHH
T ss_pred HHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccccc-cC-CCChHHHHHHHHHHHhCCCCCCEEEE-CChHHH
Confidence 87779999999986533 234566789999999997542221 11 1122222233444433 34676654 455567
Q ss_pred HHHHHHHHHcCCCCCCEEEEEc
Q 037761 166 SRLFALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 166 ~~~~~~a~~~g~~~~~~~wi~~ 187 (753)
..+++++++.|+..++.+-|.+
T Consensus 251 ~g~~~al~~~G~~vP~disvvG 272 (349)
T 1jye_A 251 LGAMRAITESGLRVGADISVVG 272 (349)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEC
T ss_pred HHHHHHHHHcCCCCCCcEEEEE
Confidence 7789999999987655554443
No 158
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=96.23 E-value=0.092 Score=54.51 Aligned_cols=163 Identities=13% Similarity=0.054 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeee-cc-ccccccceEEE
Q 037761 414 IFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVE-FT-LPYSESGVTML 491 (753)
Q Consensus 414 ll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~-fs-~p~~~~~~~~~ 491 (753)
..+.+++.++++.|-++++++.+.+. -+.+.+++++++.|.+|++..+......+...+. |+ .||.....--+
T Consensus 51 ~~~~fa~~v~e~t~G~v~i~v~~~g~-----Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~~~~~~~~ 125 (361)
T 2zzv_A 51 LFQKFTERVKELTDGQLEVQPFPAGA-----VVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALGLDRPDQW 125 (361)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEECTTS-----SSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTSCCSHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc-----ccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCCcCCHHHH
Confidence 34456666666998667777665311 1367899999999999999876655555554444 33 67654110000
Q ss_pred Eec-ccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHH------HHhhhceeeeeeeeEEeeccCCCcCChhHh
Q 037761 492 VPV-KRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLA------FILMQSYTASLSSILTVDQLEPTFADLKKL 564 (753)
Q Consensus 492 v~~-~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~------lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL 564 (753)
... .... ++ -++-. +.+...+. ....++.. ..+|+|++||
T Consensus 126 ~~~~~~~~------------------------~~-----~~~~~~~~~~g~~~l~~~~-g~~~~~~~---~~pI~s~~DL 172 (361)
T 2zzv_A 126 ETWFYSLG------------------------GL-----DIARRAFAEQGLFYVGPVQ-HDLNIIHS---KKPIRRFEDF 172 (361)
T ss_dssp HHHHHTSS------------------------HH-----HHHHHHHHHTTEEEEEEEC-CCCCCEEE---SSCCCSGGGG
T ss_pred HHHHHcCc------------------------hH-----HHHHHHHHHCCcEEecccC-Ccccccee---CCCcCChHHh
Confidence 000 0000 00 00000 00000111 11111111 3579999999
Q ss_pred hhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 565 RTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
+|+++.+. +......++ ..+ .+.+.+ +..|...+|+.|. +|+.....+..
T Consensus 173 --kG~kirv~-~~~~~~~~~-~lG---a~pv~~-~~~e~~~ALq~G~----VDg~~~~~~~~ 222 (361)
T 2zzv_A 173 --KGVKLRVP-GGMIAEVFA-AAG---ASTVLL-PGGEVYPALERGV----IDAADFVGPAV 222 (361)
T ss_dssp --TTCEEECC-SHHHHHHHH-HTT---CEEECC-CGGGHHHHHHTTS----CSEEECSCHHH
T ss_pred --CCCEEeec-CHHHHHHHH-HcC---Ceeeec-ChHHHHHHHHcCC----cceeecCCcch
Confidence 69999887 555556666 333 344544 6789999999999 99998776665
No 159
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=96.15 E-value=0.035 Score=56.37 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHh-cCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeec-c------------cceeeec
Q 037761 414 IFNATLEIVEEK-LGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVA-S------------RTDYVEF 479 (753)
Q Consensus 414 ll~~ia~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~-~------------r~~~~~f 479 (753)
+.+.+++.++++ .| +++++.+. +.....+..|.+|++|+++....... . +.+.+.+
T Consensus 35 ~~~~la~~~~~~~~g--~~v~v~~~--------~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (314)
T 1us5_A 35 VATGIAKLVNDANVG--IRANARST--------GGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRA 104 (314)
T ss_dssp HHHHHHHHHHHHTSS--EEEEEECC--------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEE
T ss_pred HHHHHHHHHHhcCCC--ceEEEEec--------CcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhe
Confidence 445666656544 56 45555542 25678999999999999875432211 0 1122333
Q ss_pred cccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcC
Q 037761 480 TLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFA 559 (753)
Q Consensus 480 s~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~ 559 (753)
..++.....++++++.+ +++
T Consensus 105 v~~~~~~~~~lvv~~~~------------------------------------------------------------~i~ 124 (314)
T 1us5_A 105 LAALYPEVVHVVARKDA------------------------------------------------------------GIR 124 (314)
T ss_dssp EEEEEEEEEEEEEETTS------------------------------------------------------------SCS
T ss_pred hhhcCcceEEEEEECCC------------------------------------------------------------CCC
Confidence 33455566677777553 389
Q ss_pred ChhHhhhcCCeEEE-ecCchHHH----HHHHhhCCCCCce--ecCCCHHHHHHHHhcCCCCCCeeEEEecc
Q 037761 560 DLKKLRTESHFVGF-QSGSFVED----FLVKQLNFSRNQT--RPLSNFGEYKEALSNGSRKGGVSAIFEEI 623 (753)
Q Consensus 560 s~~dL~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~~~~a~~~~~ 623 (753)
|++||. |+++++ ..++.... +++ ..+.....+ ..+.+..+.+.++..|+ +|+.+...
T Consensus 125 sl~dL~--g~~i~~~~~gs~~~~~~~~~l~-~~G~~~~~v~~~~~~~~~~~~~al~~G~----vda~~~~~ 188 (314)
T 1us5_A 125 TVADLK--GKRVVVGDVGSGTEQNARQILE-AYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYTV 188 (314)
T ss_dssp SGGGGT--TSEEECCCTTCHHHHHHHHHHH-HTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEEE
T ss_pred cHHHhC--CCEeecCCCCchHHHHHHHHHH-HcCCCHHHcCceecCCHHHHHHHHHcCC----ccEEEEcc
Confidence 999995 788887 45554332 333 334432222 35667889999999999 99988654
No 160
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.93 E-value=0.075 Score=50.70 Aligned_cols=181 Identities=10% Similarity=0.027 Sum_probs=108.8
Q ss_pred eehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccceE
Q 037761 410 FCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVT 489 (753)
Q Consensus 410 ~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~ 489 (753)
+...++..+.+ +.- ++++.+... +...++.+|.+|++|+++....... ..+. +.++....++
T Consensus 25 ~l~~~l~~~~~----~~P-~v~i~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~ 86 (232)
T 3ho7_A 25 LLPRVFPIWKK----ELA-GLEIHVSEM---------QTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFL 86 (232)
T ss_dssp HHHHHHHHHHH----HST-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEE
T ss_pred hhHHHHHHHHH----HCC-CcEEEEEeC---------CHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEE
Confidence 44666666666 664 467777664 7789999999999999986543322 2222 4677788889
Q ss_pred EEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCC
Q 037761 490 MLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESH 569 (753)
Q Consensus 490 ~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~ 569 (753)
+++++..+.. ....-+++||. +.
T Consensus 87 ~v~~~~hpl~-------------------------------------------------------~~~~~~~~dL~--~~ 109 (232)
T 3ho7_A 87 GYVSRCEPLF-------------------------------------------------------EQDVIRTTEVN--PH 109 (232)
T ss_dssp EEECTTSGGG-------------------------------------------------------GSSSBCGGGCC--GG
T ss_pred EEEcCCCccc-------------------------------------------------------cCCCcCHHHhc--CC
Confidence 9998775421 11245788884 43
Q ss_pred eEEEe-cC----chHHHHHHHhhCCC-CCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeC--
Q 037761 570 FVGFQ-SG----SFVEDFLVKQLNFS-RNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAG-- 641 (753)
Q Consensus 570 ~~~~~-~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~-- 641 (753)
++... .+ .....++. ..+.. .......++.......+..|. .-+++..... ....... ++..++
T Consensus 110 ~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~g~----gi~~~p~~~~-~~~~~~~--~l~~~~~~ 181 (232)
T 3ho7_A 110 RLWLLDEGHCFRDQLVRFCQ-MKGLHERQTAYSGGSMEAFMRLVESGQ----GITFIPQLTV-EQLSPSQ--KELVRPFG 181 (232)
T ss_dssp GBCCCTTTTTTTSTTHHHHT-CTTTTCSSEEEESCCHHHHHHHHHTTC----CEEEEEGGGG-GGSCHHH--HTTEECBC
T ss_pred CEEEecCCCcHHHHHHHHHH-HcCCCcCceeEEeCCHHHHHHHHHcCC----cEEEecHHHh-hhhcccC--ceEEEEcc
Confidence 33332 22 23445554 23332 344566788899999999997 5555544333 2211111 232332
Q ss_pred cccccCceEEEEcCCCCCchHhHHHHHHhhhc
Q 037761 642 PIYRTDGLGFAFAKDSPLVSHFSQAILLVREN 673 (753)
Q Consensus 642 ~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~ 673 (753)
.......++++.+++......+...+..+++.
T Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 213 (232)
T 3ho7_A 182 MPRPVREVRLAVRQDYSRRKLREQLIGLLRSA 213 (232)
T ss_dssp SSEEEEEEEEEEETTCSCHHHHHHHHHHHHTT
T ss_pred CCCceEEEEEEEeCCCccCHHHHHHHHHHHHH
Confidence 23344567788888887766666666555543
No 161
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=95.90 E-value=0.097 Score=52.80 Aligned_cols=145 Identities=10% Similarity=0.178 Sum_probs=96.9
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCC---C---CCCCceEEEecCcHH
Q 037761 8 KQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS---P---TEHPFFIRVTQNDSL 81 (753)
Q Consensus 8 d~~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~---~---~~~~~~fr~~p~~~~ 81 (753)
.++|+..+.+.+++|+++ ++++||+ ..+.++.++.. ...++|+|..+.++|... + ...+.+..+.-. .
T Consensus 51 a~gd~~~~~~~~~~l~~~-~~DlIia-i~t~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~--~ 124 (302)
T 3lkv_A 51 AQGNPAIAVQIARQFVGE-NPDVLVG-IATPTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDL--S 124 (302)
T ss_dssp CTTCHHHHHHHHHHHHTT-CCSEEEE-ESHHHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECC--C
T ss_pred CCCCHHHHHHHHHHHHhc-CCcEEEE-cCCHHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECC--c
Confidence 679999999999999986 8998886 33444555543 345799998777665432 1 222456555422 2
Q ss_pred HHHHHHHHHHHc--CCeEEEEEEeeCCc-ccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEE
Q 037761 82 QVKAISAVLQNF--SWHEVVLMYEDTNY-GAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIV 158 (753)
Q Consensus 82 ~~~a~~~~l~~~--~w~~vail~~d~~~-g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~ 158 (753)
.....+++++++ +.++++++|+.++- .....+.+++.+++.|++++..... +..++...+..+. .+.|++++
T Consensus 125 ~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~~~l~-~~~d~i~~ 199 (302)
T 3lkv_A 125 PVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIA-EKSDVIYA 199 (302)
T ss_dssp CHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHH-TTCSEEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHhcc-CCeeEEEE
Confidence 234455666443 78999999976543 3456778889999999998755432 2456777777665 45788887
Q ss_pred EeChH
Q 037761 159 HMNTA 163 (753)
Q Consensus 159 ~~~~~ 163 (753)
..+..
T Consensus 200 ~~d~~ 204 (302)
T 3lkv_A 200 LIDNT 204 (302)
T ss_dssp CSCHH
T ss_pred eCCcc
Confidence 76654
No 162
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.90 E-value=0.2 Score=47.02 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=108.4
Q ss_pred eehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccceE
Q 037761 410 FCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVT 489 (753)
Q Consensus 410 ~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~ 489 (753)
+..+++..+.+ +.- ++++.+... ....++++|.+|++|+++....... ..+. ..++....++
T Consensus 18 ~l~~~l~~~~~----~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~~~~~ 79 (219)
T 3jv9_A 18 LLPKLIVSLRR----TAP-KMPLMLEEN---------YTHTLTESLKRGDVDAIIVAEPFQE---PGIV-TEPLYDEPFF 79 (219)
T ss_dssp HHHHHHHHHHH----HST-TCCEEEEEE---------CHHHHHHHHHHTSSSEEEEESSCCC---TTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHH----HCC-CcEEEEEeC---------CcHHHHHHHHcCCCCEEEEcCCCCC---CCee-EEEeeeceEE
Confidence 44566666666 654 467766664 6789999999999999986543222 2222 4567788889
Q ss_pred EEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCC
Q 037761 490 MLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESH 569 (753)
Q Consensus 490 ~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~ 569 (753)
+++++..+.. ....-+++||. +.
T Consensus 80 ~v~~~~~pl~-------------------------------------------------------~~~~~~~~~L~--~~ 102 (219)
T 3jv9_A 80 VIVPKGHSFE-------------------------------------------------------ELDAVSPRMLG--EE 102 (219)
T ss_dssp EEEETTCGGG-------------------------------------------------------TSSSCCSSTTS--SS
T ss_pred EEEeCCCCcc-------------------------------------------------------cCCCCCHHHhc--CC
Confidence 9998775422 11245788884 54
Q ss_pred eEEE-ecCchHHHHHHHhhCC--------CCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEe
Q 037761 570 FVGF-QSGSFVEDFLVKQLNF--------SRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTA 640 (753)
Q Consensus 570 ~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 640 (753)
++.. ..+......+.+.... ........++.......+..|. .-+++....... + + ..++..+
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g~----gi~~~p~~~~~~-~--~-~~~l~~~ 174 (219)
T 3jv9_A 103 QVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGL----AISVLPATALTE-N--D-HMLFSII 174 (219)
T ss_dssp CEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTS----CEEEEEGGGCCT-T--C-TTTEEEE
T ss_pred cEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcCC----cEEehhHHHHHh-c--c-CCcEEEE
Confidence 4444 4444444555432211 2223345678899999999997 666665544433 2 2 1255555
Q ss_pred Cc--ccccCceEEEEcCCCCCchHhHHHHHHhhh
Q 037761 641 GP--IYRTDGLGFAFAKDSPLVSHFSQAILLVRE 672 (753)
Q Consensus 641 ~~--~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~ 672 (753)
+. ......++++.+++......+...+..+++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 208 (219)
T 3jv9_A 175 PFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQ 208 (219)
T ss_dssp CCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHHT
T ss_pred ecCCCCcceeEEEEEecCccccHHHHHHHHHHHh
Confidence 43 223345677788887666666655555544
No 163
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.78 E-value=0.093 Score=49.59 Aligned_cols=183 Identities=9% Similarity=-0.064 Sum_probs=108.9
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+..+++..+.+ +.. ++++.+... +...++.+|.+|++|+++........ .+. ..++....+
T Consensus 21 ~~l~~~l~~f~~----~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Di~i~~~~~~~~---~~~-~~~l~~~~~ 82 (222)
T 4ab5_A 21 DWLMPAMGEFRP----MWP-QVELDIVSG---------FQADPVGLLLQHRADLAIVSEAEKQN---GIS-FQPLFAYEM 82 (222)
T ss_dssp HHHHHHHHHHHH----HST-TEEEEEECC---------CCSCTHHHHHTTSCSEEEESCCCCCT---TEE-EEEEEEEEE
T ss_pred HHHHHHHHHHHH----HCC-CcEEEEecC---------CHHHHHHHHHcCCcCEEEecCCCCcC---CeE-EEEeecCcE
Confidence 344566777766 664 466666653 56788999999999999864332222 222 457778888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
++++++..+.. ....-+++||. +
T Consensus 83 ~~v~~~~~pl~-------------------------------------------------------~~~~i~~~dL~--~ 105 (222)
T 4ab5_A 83 VGICAPDHPLA-------------------------------------------------------AKNVWTAEDFI--G 105 (222)
T ss_dssp EEEECTTSGGG-------------------------------------------------------GCSEECGGGGS--S
T ss_pred EEEecCCChhh-------------------------------------------------------ccCCcCHHHHc--C
Confidence 99998776422 11233789994 5
Q ss_pred CeEEEe-cCchHHHHHHH---hhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEe--Cc
Q 037761 569 HFVGFQ-SGSFVEDFLVK---QLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTA--GP 642 (753)
Q Consensus 569 ~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~--~~ 642 (753)
.++... .+......+.+ ..+.... ....++.......+..|. .-+++.. .......... ++..+ ..
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~g~----gi~~~p~-~~~~~~~~~~--~l~~~~~~~ 177 (222)
T 4ab5_A 106 ETLITYPVPDEMLDLPKKILIPKNINPP-RRHSELTIAIIQLVASRR----GIAALPY-WTVMPYLEKG--YVVHRQITA 177 (222)
T ss_dssp SCEEECSSCGGGCHHHHHTTGGGTCCCC-EEECSCHHHHHHHHHTTS----CBEEEEH-HHHHHHHHTT--SCEEEEEST
T ss_pred CCEEecCCCcHHHHHHHHHHHHcCCCCC-eEecCCHHHHHHHHHcCC----eEEEcch-HHhHHHhhcC--cEEEEecCC
Confidence 555543 23222233322 2233333 567788889999999997 5555544 3333333332 34443 33
Q ss_pred ccccCceEEEEcCCCCCchHhHHHHHHhhhcc
Q 037761 643 IYRTDGLGFAFAKDSPLVSHFSQAILLVRENQ 674 (753)
Q Consensus 643 ~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G 674 (753)
......++++.+++......+...+..+++..
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~ 209 (222)
T 4ab5_A 178 DGLQSKLYAAIRTEDTDKSYLNNFCQIIRERG 209 (222)
T ss_dssp TCCEEEEEEEEEGGGTTCHHHHHHHHHHHHHH
T ss_pred CccceEEEEEEeCCcccCHHHHHHHHHHHhhh
Confidence 23445677888888776666666666655443
No 164
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.68 E-value=0.1 Score=55.27 Aligned_cols=156 Identities=10% Similarity=0.014 Sum_probs=98.4
Q ss_pred cCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEee
Q 037761 25 KFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYED 104 (753)
Q Consensus 25 ~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d 104 (753)
+.+|++||-.. ........+...++|+|..+...+... ..+.+-.+..++...+..++++|...|-++++++...
T Consensus 74 ~~~vDGiIi~~---~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~ 148 (412)
T 4fe7_A 74 DWLGDGVIADF---DDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLP 148 (412)
T ss_dssp -CCCSEEEEET---TCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCCCCEEEEec---CChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEeccc
Confidence 34888888622 233455567788999998865432211 1123455677888888889999988899999999865
Q ss_pred CCc----ccchHHHHHHHHHhCCeEEEEeeccCC-CCchhhHHHHHHHHh-c-CCccEEEEEeChHHHHHHHHHHHHcCC
Q 037761 105 TNY----GAGFISFLVDELQENDIRISHMSKIPT-SAEDFQISKELSKLS-T-MQTRVFIVHMNTALASRLFALVAKNGM 177 (753)
Q Consensus 105 ~~~----g~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~~~d~~~~l~~l~-~-~~~~vIi~~~~~~~~~~~~~~a~~~g~ 177 (753)
... .....+.+.+.+++.|+.......... ..+..+....+.++. . ..+++|+ +.+...+..+++++++.|+
T Consensus 149 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~ 227 (412)
T 4fe7_A 149 ESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHI 227 (412)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCC
Confidence 443 456778899999999876432222111 111222333344433 2 4566655 4456667788999999998
Q ss_pred CCCCEEEEE
Q 037761 178 MSKGYTWIV 186 (753)
Q Consensus 178 ~~~~~~wi~ 186 (753)
..++.+-|+
T Consensus 228 ~vP~disvi 236 (412)
T 4fe7_A 228 PVPEKLCVI 236 (412)
T ss_dssp CTTTTSEEE
T ss_pred CCCceEEEE
Confidence 755544444
No 165
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.55 E-value=0.04 Score=57.40 Aligned_cols=159 Identities=8% Similarity=0.021 Sum_probs=94.7
Q ss_pred HHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCeEEE
Q 037761 20 VDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVV 99 (753)
Q Consensus 20 ~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~va 99 (753)
.+.+...+|++||-...+... .....+...++|+|...... .... +-.+..++...+..++++|...|.++++
T Consensus 121 ~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~~~---~~~V~~D~~~~~~~a~~~L~~~G~r~I~ 193 (366)
T 3h5t_A 121 QQLVNNAAVDGVVIYSVAKGD-PHIDAIRARGLPAVIADQPA---REEG---MPFIAPNNRKAIAPAAQALIDAGHRKIG 193 (366)
T ss_dssp HHHHHTCCCSCEEEESCCTTC-HHHHHHHHHTCCEEEESSCC---SCTT---CCEEEECHHHHTHHHHHHHHHTTCCSEE
T ss_pred HHHHHhCCCCEEEEecCCCCh-HHHHHHHHCCCCEEEECCcc---CCCC---CCEEEeChHHHHHHHHHHHHHCCCCcEE
Confidence 344444488887642222222 33344566799999876422 1122 2335677788888899999889999999
Q ss_pred EEEee-------------------CCcccchHHHHHHHHHhCCeEEEEeecc-CCCCchhhHHHHHHHHhc--CCccEEE
Q 037761 100 LMYED-------------------TNYGAGFISFLVDELQENDIRISHMSKI-PTSAEDFQISKELSKLST--MQTRVFI 157 (753)
Q Consensus 100 il~~d-------------------~~~g~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~~d~~~~l~~l~~--~~~~vIi 157 (753)
+|... ........+.|++.+++.|+.+.....+ ....+..+-...+.++.+ ..+++|+
T Consensus 194 ~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~ 273 (366)
T 3h5t_A 194 ILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVL 273 (366)
T ss_dssp EEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred EEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEE
Confidence 99832 2234556788999999998763210001 001122233334444433 3567665
Q ss_pred EEeChHHHHHHHHHHHHcCCCCCCEEEEE
Q 037761 158 VHMNTALASRLFALVAKNGMMSKGYTWIV 186 (753)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 186 (753)
+ .+...+..+++++++.|+..++.+-|+
T Consensus 274 ~-~nD~~A~g~~~al~~~G~~vP~disvi 301 (366)
T 3h5t_A 274 C-TVDALAFGVLEYLKSVGKSAPADLSLT 301 (366)
T ss_dssp E-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred E-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 5 455567778999999998755544333
No 166
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=95.45 E-value=0.27 Score=49.40 Aligned_cols=159 Identities=11% Similarity=0.051 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeee-ccccccccceEEEEe
Q 037761 415 FNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVE-FTLPYSESGVTMLVP 493 (753)
Q Consensus 415 l~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~-fs~p~~~~~~~~~v~ 493 (753)
++.+++.++++.|-++++++.+.+. -+....++++++.|.+|++..+......+...+. ++.||.....--+
T Consensus 19 ~~~fa~~v~~~s~G~i~i~~~~~g~-----Lg~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~-- 91 (301)
T 2pfz_A 19 LTQFVKDVDSLSGGKLKITLHNNAS-----LYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDAS-- 91 (301)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECTTS-----SSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHH--
T ss_pred HHHHHHHHHHHcCCeEEEEEccCcc-----cCChHHHHHHHHCCceeeEechhhhccccCchhhhhcCCCCCCCHHHH--
Confidence 4556666666998777777665311 1356889999999999999766554444433322 4566654321100
Q ss_pred cccCCCCceeEEEecCccccceeeccccchhhHHH-HHHH------HHHHhhhceeeeeeeeEEeeccCCCcCChhHhhh
Q 037761 494 VKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLV-IWLW------LAFILMQSYTASLSSILTVDQLEPTFADLKKLRT 566 (753)
Q Consensus 494 ~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~-~w~l------~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~ 566 (753)
.+++-. .-.+ ..+.+...|...-..+ +. ..+|+|++||
T Consensus 92 -----------------------------~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~~---~~pI~s~~Dl-- 136 (301)
T 2pfz_A 92 -----------------------------FKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGI-FA---NRDIKQVSDM-- 136 (301)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHTTTEEEEEEEECCCCEE-EE---SSCCSSGGGG--
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHCCCEEEEecccCCcce-ee---CCCCCChHHh--
Confidence 000000 0000 0111111111111222 22 2579999999
Q ss_pred cCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEecccc
Q 037761 567 ESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPY 625 (753)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~ 625 (753)
+|+++.+. +......++ ..+ .+.+.. ...|...+|..|. +|+.......
T Consensus 137 kG~KiR~~-~~~~~~~~~-~lG---a~pv~~-~~~E~y~ALq~G~----vDg~~~~~~~ 185 (301)
T 2pfz_A 137 KGLKWRAY-SPVTAKIAE-LVG---AQPVTV-QQAELAQAMATGV----IDSYMSSGST 185 (301)
T ss_dssp TTCEEEES-SHHHHHHHH-HHT---CEEEEC-CGGGHHHHHHTTS----CSEEEECHHH
T ss_pred cCCEEecC-ChhHHHHHH-HcC---Ccceec-CHHHHHHHHhcCe----eeEEecCccc
Confidence 69999886 555556666 333 344444 6789999999999 9998655433
No 167
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=95.34 E-value=0.27 Score=49.48 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeee-ccccccccceEEEEe
Q 037761 415 FNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVE-FTLPYSESGVTMLVP 493 (753)
Q Consensus 415 l~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~-fs~p~~~~~~~~~v~ 493 (753)
++.+++.++++.|-++++++.+.+. -+....++++++.|.+|++..+......+...+. ++.||.....--+
T Consensus 20 ~~~fa~~v~e~s~G~i~i~~~~~g~-----Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~-- 92 (301)
T 2pfy_A 20 ARQFADEVKAATAGALEIKVQSNST-----LLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLASSFNES-- 92 (301)
T ss_dssp HHHHHHHHHHHTTTSEEEEEECTTS-----SSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTSCSHHHH--
T ss_pred HHHHHHHHHHHcCCeEEEEEccchh-----hCChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCcccCCHHHH--
Confidence 4456666666998777777665311 1345789999999999999766554444433322 4567654321000
Q ss_pred cccCCCCceeEEEecCccccceeeccccchhhHHHH-HHH------HHHHhhhceeeeeeeeEEeeccCCCcCChhHhhh
Q 037761 494 VKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVI-WLW------LAFILMQSYTASLSSILTVDQLEPTFADLKKLRT 566 (753)
Q Consensus 494 ~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~-w~l------~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~ 566 (753)
.+++-.. -.+ ..+.+...|...-.. ++. ..+|+|++||
T Consensus 93 -----------------------------~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~---~~pI~s~~Dl-- 137 (301)
T 2pfy_A 93 -----------------------------EKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYT---KKPVAALADL-- 137 (301)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEE---SSCCSSGGGG--
T ss_pred -----------------------------HHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eec---CCCCCCHHHh--
Confidence 0000000 000 011111111111112 222 2479999999
Q ss_pred cCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccc
Q 037761 567 ESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIP 624 (753)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~ 624 (753)
+|+++.+. +......++ ..+ .+.+.. ...|...+|..|. +|+......
T Consensus 138 kG~KiR~~-~~~~~~~~~-~lG---a~pv~~-~~~E~y~ALq~G~----vDg~~~~~~ 185 (301)
T 2pfy_A 138 KGTRFRAY-SASTSHMAA-LMG---AVPTTV-QTPEVPQAFSTGV----IDAMLTSPA 185 (301)
T ss_dssp TTCEEEEC-SHHHHHHHH-HTT---SEEEEC-CGGGHHHHHHTTS----CSBEEECHH
T ss_pred CCCEEeec-ChhHHHHHH-HcC---Ccceec-cHHHHHHHHhcce----eeeEecCcc
Confidence 69999886 555556666 333 354544 6789999999999 999865443
No 168
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.27 E-value=0.31 Score=46.70 Aligned_cols=180 Identities=9% Similarity=0.037 Sum_probs=105.1
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.. ++++.+... +...++++|.+|++|+++..... ....+. +.++....+
T Consensus 32 ~~l~~~l~~f~~----~~P-~i~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~-~~~l~~~~~ 93 (241)
T 3oxn_A 32 TILPFALPRIYQ----EAP-NVSFNFLPL---------QHDRLSDQLTYEGADLAICRPTG---PVEPLR-SEILGRVGV 93 (241)
T ss_dssp HTHHHHHHHHHH----HCT-TCEEEEEEC---------CGGGHHHHHHTSCCSEEEECCSS---CCTTEE-EEEEECCCE
T ss_pred HHHHHHHHHHHH----HCC-CCEEEEEEC---------CcccHHHHHHcCCCCEEEecCCC---CCccce-eEEeecccE
Confidence 445677777777 664 467777664 67899999999999999864322 222232 467788889
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
++++++..+.. . ..-+++||. +
T Consensus 94 ~~v~~~~hpl~-------------------------------------------------------~-~~i~~~dL~--~ 115 (241)
T 3oxn_A 94 LCLLSKQHPLA-------------------------------------------------------N-QEMSLDDYL--S 115 (241)
T ss_dssp EEEEETTSGGG-------------------------------------------------------G-SCCCHHHHH--T
T ss_pred EEEEeCCCCcc-------------------------------------------------------c-CCCCHHHHh--c
Confidence 99998775422 1 245889995 5
Q ss_pred CeEEEec-CchHHHHHHHhh--CCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc--c
Q 037761 569 HFVGFQS-GSFVEDFLVKQL--NFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP--I 643 (753)
Q Consensus 569 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~--~ 643 (753)
.++.... +......+.+.. ..........++.......+..|. .-+++ ............ ++..++. .
T Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----giail-p~~~~~~~~~~~--~l~~~~~~~~ 188 (241)
T 3oxn_A 116 HPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLP----IIITV-PADLAYLVAERY--DLVVKPLPFQ 188 (241)
T ss_dssp SEEEECSCCHHHHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--CC----CEEEE-EHHHHHHHHHHT--TEEEECCSSC
T ss_pred CCeEEEecCCCccchhHHHHHhhccceEEEECCcHHHHHHHHhCCC----eEEEc-HHHHHHHhcccC--CceEeCCCCC
Confidence 5555443 333333333211 122222345678888899998887 55555 434344333322 4555543 3
Q ss_pred cccCceEEEEcCCCCCchHhHHHHHHhh
Q 037761 644 YRTDGLGFAFAKDSPLVSHFSQAILLVR 671 (753)
Q Consensus 644 ~~~~~~~~~~~k~s~l~~~~n~~i~~l~ 671 (753)
.....++++.+++..........+..+.
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 216 (241)
T 3oxn_A 189 FTPFDYSMIWHARCEHSPAQEWLRSVVR 216 (241)
T ss_dssp CCCCCEEEEEEGGGTTCHHHHHHHHHHH
T ss_pred CCcccEEEEEcCcCCCCchhHHHHHHHH
Confidence 3355677888887655544444444433
No 169
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=95.25 E-value=0.21 Score=47.45 Aligned_cols=191 Identities=9% Similarity=0.032 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCc-ccEEEeeeeeeccc---ceeee--ccccccccc
Q 037761 414 IFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKK-FDAVVGDISIVASR---TDYVE--FTLPYSESG 487 (753)
Q Consensus 414 ll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~Di~~~~~~~t~~r---~~~~~--fs~p~~~~~ 487 (753)
++..+.+.++++.|.++++ ... +...++..|.+|+ +|+++..-....++ ...+. -..|+..+.
T Consensus 13 ~l~~~~~~F~~~p~i~v~~--~~~---------~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVI--SSG---------SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGK 81 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEE--EEE---------CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECC
T ss_pred HHHHHHHHHHhccCCeEEE--EEC---------CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeee
Confidence 3444444444477755554 332 5688999999998 99987532111111 11111 246788888
Q ss_pred eEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhc
Q 037761 488 VTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTE 567 (753)
Q Consensus 488 ~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~ 567 (753)
+++++++.++.. .+++||.+.
T Consensus 82 ~vlv~~~~~~~~-----------------------------------------------------------~~~~dL~~~ 102 (231)
T 1atg_A 82 LVLWSAKPGLVD-----------------------------------------------------------NQGKVLAGN 102 (231)
T ss_dssp EEEEESSTTTSC-----------------------------------------------------------TTSGGGGSS
T ss_pred EEEEEcCCCCCC-----------------------------------------------------------cchhhhccC
Confidence 999998775422 268888643
Q ss_pred CC-eEEEecC--ch----HHHHHHHhhCCC-----CCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCC-
Q 037761 568 SH-FVGFQSG--SF----VEDFLVKQLNFS-----RNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYS- 634 (753)
Q Consensus 568 ~~-~~~~~~~--~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~- 634 (753)
+. ++++... +. ....+.+ .+.. ..++....+..+....+.+|. +++.+........ ....
T Consensus 103 ~~~~i~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~G~----~~i~~~~~~~~~~--~~~~~ 175 (231)
T 1atg_A 103 GWRHIAISNPQIAPYGLAGTQVLTH-LGLLDKLTAQERIVEANSVGQAHSQTASGA----ADLGFVALAQIIQ--AAAKI 175 (231)
T ss_dssp SCSCEEEECTTTCHHHHHHHHHHHH-TTCHHHHHHTTCEEEESSHHHHHHHHHTTS----SSEEEEEGGGTCC--TTSCC
T ss_pred CCCEEEecCCCCCchhHHHHHHHHH-CCCcccccccceEEecCCHHHHHHHHHcCC----CCEEEEEHHHhhh--ccccc
Confidence 32 6666532 22 2334442 2221 113445567788899999997 7766655443221 1111
Q ss_pred -CCcEEeCccc-ccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHh
Q 037761 635 -SKYTTAGPIY-RTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKK 683 (753)
Q Consensus 635 -~~l~~~~~~~-~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~ 683 (753)
.....++... ......+++.++.+..+.....+.-+.+.. .+++..+
T Consensus 176 ~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~a~~fi~~l~s~~--~q~~~~~ 224 (231)
T 1atg_A 176 PGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGPK--AVAIIKA 224 (231)
T ss_dssp SSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHHTTSHH--HHHHHHH
T ss_pred cCeEEEeCcccCccceEeEEEecCCCChHHHHHHHHHHcCHH--HHHHHHH
Confidence 1122222221 123446677788887777777776665544 3444444
No 170
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=95.04 E-value=0.14 Score=50.34 Aligned_cols=151 Identities=12% Similarity=0.066 Sum_probs=101.7
Q ss_pred hHHHHHHHHcCcccEEEeeeeeecccc-eeee-ccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhh
Q 037761 448 YDELLYQIKLKKFDAVVGDISIVASRT-DYVE-FTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKF 525 (753)
Q Consensus 448 ~~~~~~~l~~~~~Di~~~~~~~t~~r~-~~~~-fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~ 525 (753)
-.++-..+..|.+|+++.+--.-.|.. ...+ .-..|....+++.+|.. .
T Consensus 70 ~~DIp~yV~~G~~DlGItG~D~l~E~~~~v~elldLgfG~crl~vAvp~~---~-------------------------- 120 (304)
T 1nh8_A 70 PKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAG---R-------------------------- 120 (304)
T ss_dssp GGGHHHHHHHSSCSEEEEEHHHHHHHTCCEEEEEECSCCCEEEEEEEETT---S--------------------------
T ss_pred hhhHHHHHhCCCccEEEeeeeeeeecCCCceEEecCCcccEEEEEEEECC---C--------------------------
Confidence 378889999999999998875433332 2221 12245556666666655 2
Q ss_pred HHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHH
Q 037761 526 VLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKE 605 (753)
Q Consensus 526 ~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (753)
+++++|| .+++|+.........||.+ .+.. .++......-|.-
T Consensus 121 --------------------------------~~~~~~l--~~~RIATkYp~l~r~yf~~-~gi~-~~Ii~l~GsvE~a- 163 (304)
T 1nh8_A 121 --------------------------------NWTTADL--AGMRIATAYPNLVRKDLAT-KGIE-ATVIRLDGAVEIS- 163 (304)
T ss_dssp --------------------------------CCCGGGG--TTCEEEESCHHHHHHHHHH-HTCC-CEEEECSSCCTHH-
T ss_pred --------------------------------cCChHHh--CCCEEEeCcHHHHHHHHHH-CCCe-EEEEECCCceeec-
Confidence 7889999 5899999988889999984 4443 5666555444443
Q ss_pred HHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCC-C--chHhHHHHHHhhh
Q 037761 606 ALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSP-L--VSHFSQAILLVRE 672 (753)
Q Consensus 606 ~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~-l--~~~~n~~i~~l~~ 672 (753)
...|- .|++++-..+...+-++ +|.++++.+......++.+|.+. . .+.++..+.+|+.
T Consensus 164 -P~~Gl----ADaIvDiVsTG~TLraN---gL~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 225 (304)
T 1nh8_A 164 -VQLGV----ADAIADVVGSGRTLSQH---DLVAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQG 225 (304)
T ss_dssp -HHTTS----CSEEEEEESSSHHHHHT---TEEEEEEEEEEECEEEEEEC--------CHHHHHHHHHHH
T ss_pred -cCCCc----ccEEEEEeCChHHHHHC---cCEEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHHH
Confidence 34466 89999888887776666 78888666666677788888763 2 3467777777763
No 171
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=95.04 E-value=1 Score=44.91 Aligned_cols=155 Identities=12% Similarity=0.019 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccC-CccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKA-QVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~-~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
.++.......+.++++ +|.+||.... ....++..++..+ ++|++......+ . +.+-.....+..-+.....
T Consensus 47 ~~~~~~~~~l~~l~~~-~vdgIi~~~~-~~~~~~~~~~~~~p~~p~v~id~~~~---~---~~~~~v~~d~~~g~~lag~ 118 (296)
T 2hqb_A 47 NSEQKAHRRIKELVDG-GVNLIFGHGH-AFAEYFSTIHNQYPDVHFVSFNGEVK---G---ENITSLHFEGYAMGYFGGM 118 (296)
T ss_dssp CSHHHHHHHHHHHHHT-TCCEEEECST-HHHHHHHTTTTSCTTSEEEEESCCCC---S---SSEEEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEcCH-hHHHHHHHHHHHCCCCEEEEEecCcC---C---CCEEEEEechHHHHHHHHH
Confidence 4445555566666665 8999997432 2233455555544 889888754211 1 2233333333333333333
Q ss_pred HHHH-cCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCC-chhhHHHHHHHHhcCCccEEEEEeChHHHH
Q 037761 89 VLQN-FSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSA-EDFQISKELSKLSTMQTRVFIVHMNTALAS 166 (753)
Q Consensus 89 ~l~~-~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~ 166 (753)
++.+ .+-++|++|....... ..+.+++.+++.|.. .....+.... +...-.....++.+.++|+|+..... .+.
T Consensus 119 la~~l~~~~~Ig~i~g~~~~~--r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~-~a~ 194 (296)
T 2hqb_A 119 VAASMSETHKVGVIAAFPWQP--EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDG-YHV 194 (296)
T ss_dssp HHHHTCSSSEEEEEESCTTCH--HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTT-THH
T ss_pred HHHhhccCCeEEEEcCcCchh--hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCC-CCH
Confidence 3333 2458999998643322 778899999998874 2222222111 12223344555656679977755443 456
Q ss_pred HHHHHHHHcC
Q 037761 167 RLFALVAKNG 176 (753)
Q Consensus 167 ~~~~~a~~~g 176 (753)
..++++++.|
T Consensus 195 Gv~~a~~e~G 204 (296)
T 2hqb_A 195 PVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 6788888888
No 172
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=94.92 E-value=0.15 Score=50.34 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=76.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCcHH--------HHHHhhccC-----CccEEeecCCCCCCCCCCCCceEEEecCcHHHHH
Q 037761 18 LAVDLLKKFQVQAIIGPQIPAAAP--------FLVELGEKA-----QVPIISFFETSPALSPTEHPFFIRVTQNDSLQVK 84 (753)
Q Consensus 18 ~a~~Li~~~~V~aviG~~~s~~~~--------av~~i~~~~-----~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~ 84 (753)
++++|. +.++++|+-+..+.... ....+.+.. ++|+++. +.
T Consensus 82 aa~~L~-~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~ 135 (273)
T 2xed_A 82 CVLEIA-DAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AG 135 (273)
T ss_dssp HHHHHH-TTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HH
T ss_pred HHHHHh-hcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HH
Confidence 444444 45888887655443221 123344444 7887773 35
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC-------CchhhHHHHHHHHhcCCccEEE
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS-------AEDFQISKELSKLSTMQTRVFI 157 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~l~~~~~~vIi 157 (753)
++++.++..|-++|+|+. .|.....+.+.+.+++.|+++......... .+...+...+.++...++|+|+
T Consensus 136 A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIv 212 (273)
T 2xed_A 136 ALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALV 212 (273)
T ss_dssp HHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEE
T ss_pred HHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEE
Confidence 666667777889999996 566667778999999999998765543321 1234566677777667899999
Q ss_pred EE-eChH
Q 037761 158 VH-MNTA 163 (753)
Q Consensus 158 ~~-~~~~ 163 (753)
+. |..-
T Consensus 213 Lg~CT~l 219 (273)
T 2xed_A 213 ISCAVQM 219 (273)
T ss_dssp EESSSSS
T ss_pred EcCCCCc
Confidence 88 7643
No 173
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=94.89 E-value=0.36 Score=46.55 Aligned_cols=195 Identities=9% Similarity=0.026 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCc-ccEEEeeeeeeccc---ceeee--cccccccc
Q 037761 413 EIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKK-FDAVVGDISIVASR---TDYVE--FTLPYSES 486 (753)
Q Consensus 413 dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~Di~~~~~~~t~~r---~~~~~--fs~p~~~~ 486 (753)
+.++.+.+.++++.|.++++.+. ....++..|.+|. +|+.+++-.-..++ ...+. ...+|..+
T Consensus 19 ~~~~~l~~~Fe~~~gi~V~~~~~-----------~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~ 87 (237)
T 3r26_A 19 NAMQDIATQFKKEKGVDVVSSFA-----------SSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGN 87 (237)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEE-----------CHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEEC-----------CHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcc
Confidence 44555555555588866655443 4578889999887 99998642211111 12222 23478888
Q ss_pred ceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhh
Q 037761 487 GVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRT 566 (753)
Q Consensus 487 ~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~ 566 (753)
.+++++++..+.. +..-..++++.||..
T Consensus 88 ~lvl~~~~~~~~~----------------------------------------------------~~~i~~~~~l~~l~~ 115 (237)
T 3r26_A 88 SLVVVAPKASVQK----------------------------------------------------DFTIDSKTNWTSLLN 115 (237)
T ss_dssp CEEEEEESSCCCC----------------------------------------------------CCCCSTTCCHHHHHT
T ss_pred eEEEEEeCCCCcc----------------------------------------------------cccccchHhHHHhcC
Confidence 9999999875321 000012456777653
Q ss_pred cCCeEEEecC------chHHHHHHHhhCCC---CCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCc
Q 037761 567 ESHFVGFQSG------SFVEDFLVKQLNFS---RNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKY 637 (753)
Q Consensus 567 ~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l 637 (753)
+.++++... ......+++ .+.- ..+++...+..+....+.+|+ +|+.+........ . .++
T Consensus 116 -~~~iai~~p~~~p~G~~a~~~l~~-~g~~~~l~~~~~~~~~~~~~~~~v~~Ge----~d~gi~~~s~a~~---~--~~~ 184 (237)
T 3r26_A 116 -GGRLAVGDPEHVPAGIYAKEALQK-LGAWDTLSPKLAPAEDVRGALALVERNE----APLGIVYGSDAVA---S--KGV 184 (237)
T ss_dssp -TCCEEEECTTTCHHHHHHHHHHHH-TTCHHHHGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHH---C--SSE
T ss_pred -CCeEEEeCCCCCChHHHHHHHHHH-cCCHHHhhhcEEecCCHHHHHHHHHcCC----CCEEEEEeccccc---C--CCC
Confidence 567887643 233444542 2211 134555677889999999999 9988876543321 2 234
Q ss_pred EEe---Cccc-ccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhh
Q 037761 638 TTA---GPIY-RTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKY 684 (753)
Q Consensus 638 ~~~---~~~~-~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~ 684 (753)
.++ ++.. ....+.+++.|+++- +.-.+++.-|.... -+++..+|
T Consensus 185 ~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl~S~e--aq~i~~~~ 232 (237)
T 3r26_A 185 KVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYLKGPQ--AAEIFKRY 232 (237)
T ss_dssp EEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHHTSHH--HHHHHHHT
T ss_pred eEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHHcCHH--HHHHHHHc
Confidence 443 3322 223456777888765 44455555554433 34454443
No 174
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=94.79 E-value=0.3 Score=50.64 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeec--cccccccceEEEE
Q 037761 415 FNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEF--TLPYSESGVTMLV 492 (753)
Q Consensus 415 l~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~f--s~p~~~~~~~~~v 492 (753)
.+.+++.++++.|-++++++.+.+. -+...+++++++.|.+|++..+......+...+.. +.||..+....
T Consensus 51 ~~~fa~~v~e~s~G~v~i~~~~~g~-----Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~~~lPf~~~~~~~-- 123 (365)
T 2hzl_A 51 AEVLSKMLSEATDGNFQIQVFSAGE-----LVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPFSLSARGI-- 123 (365)
T ss_dssp HHHHHHHHHHHTTTSSEEEEECTTT-----SSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHTTCCTTCCCHHHH--
T ss_pred HHHHHHHHHHhcCCeEEEEEecCCc-----ccCHHHHHHHHHcCccceeecchhhhcccChhHhhhhcCCCCCCHHHH--
Confidence 4455665666998777777665311 13678999999999999997665444444433432 35654211000
Q ss_pred ecccCCCCceeEEEecCccccceeeccccchhhHHH---HHHHH------HHHhhhceeeeeeeeEEeeccCCCcCChhH
Q 037761 493 PVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLV---IWLWL------AFILMQSYTASLSSILTVDQLEPTFADLKK 563 (753)
Q Consensus 493 ~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~---~w~l~------~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~d 563 (753)
.+.+.. --++- .+.+...|..... .++. ...+|+|++|
T Consensus 124 ------------------------------~~~~~~~~g~~~~~~~~~~~g~~~l~~~~~g~~-~~~~--~~~pI~s~~D 170 (365)
T 2hzl_A 124 ------------------------------NAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQ-MGGW--FRREINTVAD 170 (365)
T ss_dssp ------------------------------HHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSB-CCCE--ESSCCCSTGG
T ss_pred ------------------------------HHHHHcCChHHHHHHHHHHCCCEEEeccCCCcc-ccee--ecCCCCChHH
Confidence 000000 00000 0011111111111 1111 1357999999
Q ss_pred hhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcC-CCCcEEeCc
Q 037761 564 LRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKY-SSKYTTAGP 642 (753)
Q Consensus 564 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~ 642 (753)
| +|+++.+. + .....++ ..+ .+.+.. ...|...+|..|. +|+.....+...+-.+-+ -.++.....
T Consensus 171 L--kG~KiR~~-~-~~~~~~~-~lG---a~pv~~-~~~e~y~ALq~G~----VDg~~~~~p~~~~~~~~~ev~k~~~~~~ 237 (365)
T 2hzl_A 171 M--QGLKMRVG-G-FAGKVME-RLG---VVPQQI-AGGDIYPALEKGT----IDATEWVGPYDDEKLGFFKVAPYYYYPG 237 (365)
T ss_dssp G--TTCEEECC-T-THHHHHH-TTT---CEEECC-CTTSHHHHHHHTS----CSEECCSCHHHHHHHTGGGTCCEEEECB
T ss_pred h--CCCEEecC-C-cHHHHHH-HcC---Ccceec-CHHHHHHHHhCCC----cceeeccCccchhhcChHHhhheeeccC
Confidence 9 69999877 4 4556666 232 343433 4568899999999 999886655543222222 113333222
Q ss_pred -ccccCceEEEEcCC
Q 037761 643 -IYRTDGLGFAFAKD 656 (753)
Q Consensus 643 -~~~~~~~~~~~~k~ 656 (753)
........++++++
T Consensus 238 ~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 238 WWEGGPTVHFMFNKS 252 (365)
T ss_dssp TTCSSCEEEEEEEHH
T ss_pred ccccccceEEEEcHH
Confidence 12223456677764
No 175
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=94.77 E-value=0.76 Score=45.81 Aligned_cols=182 Identities=14% Similarity=0.082 Sum_probs=106.1
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeecccccc-ccc
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYS-ESG 487 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~-~~~ 487 (753)
.+...++..+.+ +.- ++++.+... +...++.+|.+|++|+++..-..... .+. ..++. ...
T Consensus 108 ~~l~~~l~~f~~----~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~~---~l~-~~~l~~~~~ 169 (306)
T 3fzv_A 108 LYLPGLIAGFRQ----AYP-GVEIRIRDG---------EQQELVQGLTSGRFDLAFLYEHDLDS---TIE-TEPLMPPQR 169 (306)
T ss_dssp HHHHHHHHHHHH----HCT-TEEEEEEEE---------CHHHHHHHHHHTSCSEEEECSSSCCT---TEE-EEESSCCBC
T ss_pred HHHHHHHHHHHH----HCC-CeEEEEEeC---------CHHHHHHHHHCCCccEEEEecccccc---ccc-eeeeeeccc
Confidence 445667777766 664 466666664 77899999999999999853222222 222 34555 677
Q ss_pred eEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhc
Q 037761 488 VTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTE 567 (753)
Q Consensus 488 ~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~ 567 (753)
.+++++++.+.. ....-+++||.
T Consensus 170 ~~~v~~~~~pl~-------------------------------------------------------~~~~~~~~dL~-- 192 (306)
T 3fzv_A 170 PHALLPEGHRFA-------------------------------------------------------GQAQVSLRDLC-- 192 (306)
T ss_dssp CEEEEETTCTTT-------------------------------------------------------TSSEECHHHHT--
T ss_pred cEEEecCCCccc-------------------------------------------------------CCCCCCHHHHc--
Confidence 788888775532 11234889995
Q ss_pred CCeEEEec-Cch---HHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeC--
Q 037761 568 SHFVGFQS-GSF---VEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAG-- 641 (753)
Q Consensus 568 ~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~-- 641 (753)
+.++.... +.. ...++. ..+.........++.......+..|. .-+++........ ... ...+..++
T Consensus 193 ~~~~i~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~~~~~~-~~~-~~~l~~~~~~ 265 (306)
T 3fzv_A 193 LEPMILLDVQPSRTYFVSLFE-ELGLTPNIAFSSPSIEMVRGMVGQGF----GFSLLVTRPHSEC-TYD-GKKVVMVDLA 265 (306)
T ss_dssp TSCEEEECCTTHHHHHHHHHH-HTTCCCCEEEEESCHHHHHHHHHTTS----CBEEECCCCSCSB-CTT-SCBEEEEEES
T ss_pred CCCEEEecCCcchHHHHHHHH-HcCCCCCeEEEeCCHHHHHHHHHcCC----CEEEEeccccccc-ccC-CCceEEEECC
Confidence 55444433 222 233444 33443334455678888899999997 5555544332211 111 11355543
Q ss_pred cccccCceEEEEcCCCCCchHhHHHHHHhhh
Q 037761 642 PIYRTDGLGFAFAKDSPLVSHFSQAILLVRE 672 (753)
Q Consensus 642 ~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~ 672 (753)
.......++++.+++...-......+..+++
T Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 296 (306)
T 3fzv_A 266 EPVSTSGLAAAWLKRAQLTKPARLFVDYCRE 296 (306)
T ss_dssp SCCCBCCCEEEEETTSCCCHHHHHHHHHHHH
T ss_pred CCCccceEEEEEeCCcccCHHHHHHHHHHHH
Confidence 3334557888888886666666555555443
No 176
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=94.76 E-value=0.18 Score=53.65 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=62.9
Q ss_pred hhHh-hhcCC--eEEEe-cCchHHHHHH---HhhCCCC---CceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHH
Q 037761 561 LKKL-RTESH--FVGFQ-SGSFVEDFLV---KQLNFSR---NQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFL 630 (753)
Q Consensus 561 ~~dL-~~~~~--~~~~~-~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~ 630 (753)
++|| ++.|+ ++|+. .++..+.+++ +..+... .+++.+ ...++..+|.+|+ +|+++...+......
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~----iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGT----MDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTC----CCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCC----ccEEEeccchHHHHH
Confidence 6888 65688 99997 5665443322 1334432 344444 6789999999999 999998888776655
Q ss_pred hcCCCCcEE-eCcccc-cCceEEEEcCC----CC-----CchHhHHHHHHhhh
Q 037761 631 KKYSSKYTT-AGPIYR-TDGLGFAFAKD----SP-----LVSHFSQAILLVRE 672 (753)
Q Consensus 631 ~~~~~~l~~-~~~~~~-~~~~~~~~~k~----s~-----l~~~~n~~i~~l~~ 672 (753)
++....... ..+... ....+++++++ .| +.+.+.++...+.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 554212211 122222 23355677654 45 44455555555654
No 177
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=94.51 E-value=0.18 Score=51.89 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=41.9
Q ss_pred CcCChhHhhhcCCeEEEecCchHHHHHH---HhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHH
Q 037761 557 TFADLKKLRTESHFVGFQSGSFVEDFLV---KQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVF 629 (753)
Q Consensus 557 ~i~s~~dL~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~ 629 (753)
.+++++|| .|+++|+.. +..+.++. +..+.....+.......+...++.+|+ +|+.+...+.....
T Consensus 102 ~~~~~~dL--kGK~ig~~~-~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~----vDa~~~~~p~~~~~ 170 (342)
T 4esw_A 102 ITSDFQSL--KGKRIGYVG-EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGT----IDCGIGIECIQQVE 170 (342)
T ss_dssp CCSSGGGG--TTCEEEESS-SHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTS----SSEEEEETTTHHHH
T ss_pred ccCCHHHh--CCCEEEecC-CchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCC----CCEEEEeccchHHH
Confidence 36889999 599999853 33333332 233444444443333445678899999 99999877665443
No 178
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=94.42 E-value=0.4 Score=45.73 Aligned_cols=78 Identities=8% Similarity=0.046 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC-------CchhhHHHHHHHHhcC--Cc
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS-------AEDFQISKELSKLSTM--QT 153 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~l~~~--~~ 153 (753)
..++++.++..|-++|+|+. .|+....+.+++.+++.|+++......... .+...+...+.++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 56777777778889999996 566777778889999999998665543321 1234566666777666 88
Q ss_pred cEEEEEeChH
Q 037761 154 RVFIVHMNTA 163 (753)
Q Consensus 154 ~vIi~~~~~~ 163 (753)
|+|++.|..-
T Consensus 173 daIvLgCT~l 182 (223)
T 2dgd_A 173 DAVYIACTAL 182 (223)
T ss_dssp SEEEECCTTS
T ss_pred CEEEEeCCcc
Confidence 9998887644
No 179
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=94.41 E-value=0.66 Score=45.18 Aligned_cols=193 Identities=13% Similarity=0.003 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCc-ccEEEeeeeeeccc---ceeee--cccccccc
Q 037761 413 EIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKK-FDAVVGDISIVASR---TDYVE--FTLPYSES 486 (753)
Q Consensus 413 dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~Di~~~~~~~t~~r---~~~~~--fs~p~~~~ 486 (753)
+.++.|++.++++.|.++++.+- ....++..|.+|. +|+.+++-.-..++ ...+. -..++..+
T Consensus 35 ~~~~~l~~~Fe~~~gi~V~~~~~-----------~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~ 103 (253)
T 3gzg_A 35 ESMDEAATAYEKATGTPVRVSYA-----------ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGN 103 (253)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEE-----------CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCeEEEEEC-----------ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEee
Confidence 45555666566588866555443 5578889999987 99998642211111 12222 12467788
Q ss_pred ceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCC--hhHh
Q 037761 487 GVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFAD--LKKL 564 (753)
Q Consensus 487 ~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s--~~dL 564 (753)
.+++++++.++.. ...|++ +.|+
T Consensus 104 ~lvl~~~~~~~~~-------------------------------------------------------~~~i~~~dl~~l 128 (253)
T 3gzg_A 104 TLVLVAPASSKLR-------------------------------------------------------VDPRAPGAIAKA 128 (253)
T ss_dssp CEEEEEETTCCCC-------------------------------------------------------CCTTSTTHHHHH
T ss_pred EEEEEEECCCCcc-------------------------------------------------------cCCCCHHHHHHh
Confidence 8999999875410 013676 5555
Q ss_pred hhcCCeEEEecC------chHHHHHHHhhCCC---CCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCC
Q 037761 565 RTESHFVGFQSG------SFVEDFLVKQLNFS---RNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSS 635 (753)
Q Consensus 565 ~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~ 635 (753)
...+.++++... ......+.+ .+.- ..+++...+..+.+..+..|+ +|+.+....... .. .
T Consensus 129 ~~~~~~iai~dP~~~p~G~~a~~~l~~-~g~~~~l~~~~v~~~~~~~~~~~v~~Ge----ad~giv~~s~a~---~~--~ 198 (253)
T 3gzg_A 129 LGENGRLAVGQTASVPAGSYAAAALRK-LGQWDSVSNRLAESESVRAALMLVSRGE----APLGIVYGSDAR---AD--A 198 (253)
T ss_dssp TTTTCCEEEECTTTSHHHHHHHHHHHH-TTCHHHHTTSEEEESSHHHHHHHHHTTS----SSEEEEEHHHHH---HC--T
T ss_pred hcCCCEEEEeCCCCCchHHHHHHHHHH-cCcHHHHhhceeecCCHHHHHHHHHcCC----CCEEEEEhhccc---cC--C
Confidence 433468888643 233344442 2211 134555678889999999999 998887655433 11 2
Q ss_pred CcEEe---Cccc-ccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhh
Q 037761 636 KYTTA---GPIY-RTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKY 684 (753)
Q Consensus 636 ~l~~~---~~~~-~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~ 684 (753)
++.++ ++.. ....+.+++.|++ -.+.-.+++.-|.... -+++.++|
T Consensus 199 ~v~~v~~~P~~~~~~i~~~~ai~k~~-~~~~A~~Fi~fl~S~e--aq~i~~~~ 248 (253)
T 3gzg_A 199 KVRVVATFPDDSHDAIVYPVAALKNS-NNPATAAFVSWLGSKP--AKAIFARR 248 (253)
T ss_dssp TEEEEEECCGGGSCCEEEEEEECTTC-CCTTHHHHHHHTTSHH--HHHHHHHT
T ss_pred CceEEEECCcccCceeEEEEEEECCC-ChHHHHHHHHHHcCHH--HHHHHHHc
Confidence 45443 3322 2234567777765 2233333444333332 34444443
No 180
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=94.39 E-value=1.2 Score=42.30 Aligned_cols=176 Identities=9% Similarity=0.067 Sum_probs=101.9
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++++... +...++++|.+|++|+++...... ...+. +.+.....+
T Consensus 43 ~~l~~~l~~f~~----~~P-~v~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~ 104 (238)
T 2hxr_A 43 YFIGPLMADFYA----RYP-SITLQLQEM---------SQEKIEDMLCRDELDVGIAFAPVH---SPELE-AIPLLTESL 104 (238)
T ss_dssp TTHHHHHHHHHH----HCT-TSCEEEEEC---------CHHHHHHHHHTTSCSEEEEESSCC---CTTEE-EEEEEEEEE
T ss_pred HHHHHHHHHHHH----hCC-CcEEEEEEC---------CHHHHHHHHHcCCCcEEEEcCCCC---cccce-eeeeccCcE
Confidence 345667777777 664 467777664 678899999999999998542221 12232 356778888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
++++++..+.. ....-+++||. +
T Consensus 105 ~~v~~~~hpl~-------------------------------------------------------~~~~i~~~dl~--~ 127 (238)
T 2hxr_A 105 ALVVAQHHPLA-------------------------------------------------------VHEQVALSRLH--D 127 (238)
T ss_dssp EEEEETTSGGG-------------------------------------------------------GCSEECGGGGG--G
T ss_pred EEEEcCCCccc-------------------------------------------------------ccCCCCHHHHh--c
Confidence 99998765421 01234788885 5
Q ss_pred CeEEEe-cCchH----HHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeC--
Q 037761 569 HFVGFQ-SGSFV----EDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAG-- 641 (753)
Q Consensus 569 ~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~-- 641 (753)
.++... .+... ..++. ..+.........++.......+..|. .-+++.. .... ... ++..++
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~-~~~~----~~~-~l~~~~~~ 196 (238)
T 2hxr_A 128 EKLVLLSAEFATREQIDHYCE-KAGLHPQVVIEANSISAVLELIRRTS----LSTLLPA-AIAT----QHD-GLKAISLA 196 (238)
T ss_dssp CEEEEECTTSHHHHHHHHHHH-HTTCCCEEEEEESCHHHHHHHHHHSS----CBEEEET-HHHH----HCT-TEEEEEES
T ss_pred CCeEEecCCccHHHHHHHHHH-HcCCCCCeEEEeCCHHHHHHHHHcCC----cEEEecH-HHhc----cCC-CeEEEecC
Confidence 544433 33322 23333 22332223345678888899999997 5555543 2222 222 454442
Q ss_pred cccccCceEEEEcCCCCCchHhHHHHHHh
Q 037761 642 PIYRTDGLGFAFAKDSPLVSHFSQAILLV 670 (753)
Q Consensus 642 ~~~~~~~~~~~~~k~s~l~~~~n~~i~~l 670 (753)
.......++++.+++.+........+..+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 225 (238)
T 2hxr_A 197 PPLLERTAVLLRRKNSWQTAAAKAFLHMA 225 (238)
T ss_dssp SCSCEEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred CCCeeEEEEEEEeCCCccCHHHHHHHHHH
Confidence 22233456777787766555555554443
No 181
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=94.35 E-value=0.63 Score=44.86 Aligned_cols=114 Identities=8% Similarity=0.085 Sum_probs=61.6
Q ss_pred CcCChhHhhhcCCeEEEecCchHHH----HHHHhhCCC--------------------CCceecCCCHHHHHHHHhcCCC
Q 037761 557 TFADLKKLRTESHFVGFQSGSFVED----FLVKQLNFS--------------------RNQTRPLSNFGEYKEALSNGSR 612 (753)
Q Consensus 557 ~i~s~~dL~~~~~~~~~~~~~~~~~----~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~g~~ 612 (753)
.|+|++||. .|++|++..+.+.+. .|+ ..+.- +.++..+ ...+...++ ++
T Consensus 91 kiksl~dL~-~G~~Iaip~d~sn~~ral~lL~-~aGli~l~~~~~~~~t~~dI~~np~~v~~~~l-~~~~~~~al--~~- 164 (241)
T 1xs5_A 91 TYRHVSDFP-AGAVIAIPNDSSNEARALRLLE-AAGFIRMRAGSGLFATVEDVQQNVRNVVLQEV-ESALLPRVF--DQ- 164 (241)
T ss_dssp SCCSGGGCC-TTCEEEEECSHHHHHHHHHHHH-HTTSCEECTTCCTTCCGGGEEECTTCCEEEEE-CGGGHHHHG--GG-
T ss_pred CCCChHHcC-CCCEEEEeCCCchHHHHHHHHH-HCCCEEecCCCCCccChhhhhcCCCceEEEEe-CHHHHHHhh--hc-
Confidence 599999994 499999988766543 233 22320 1122222 345666666 45
Q ss_pred CCCeeEEEeccccHHHHHhcC--C--CCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhh
Q 037761 613 KGGVSAIFEEIPYIKVFLKKY--S--SKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKY 684 (753)
Q Consensus 613 ~~~~~a~~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~ 684 (753)
+|+.+.+.... .... . ..+. .......+...++++++..=.+.+.+.+..++... ..+.+.++|
T Consensus 165 ---VDaa~i~~~~a---~~agl~~~~~~l~-~e~~~~~~~nviv~r~~~~~~~~vk~l~~a~~s~~-v~~~i~~~~ 232 (241)
T 1xs5_A 165 ---VDGAVINGNYA---IMAGLSARRDGLA-VEPDASAYANVLVVKRGNEADARVQAVLRALCGGR-VRTYLKERY 232 (241)
T ss_dssp ---SSEEEECHHHH---HHTTCCTTTTCSE-ECSCGGGGCEEEEEETTCTTCHHHHHHHHHHTSHH-HHHHHHHHC
T ss_pred ---cCEEEECcHHH---HHcCCCcccceEE-EcCCCCceEEEEEEECCccChHHHHHHHHHHCCHH-HHHHHHHhc
Confidence 89888776543 2222 1 1232 22222233345677776445556666666666665 444444443
No 182
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=94.25 E-value=0.95 Score=41.95 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=102.9
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+..+++..+.+ +.- ++++++... +...++++|.+|++|+++...... ...+. +.++....+
T Consensus 18 ~~l~~~l~~f~~----~~P-~i~i~l~~~---------~~~~l~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~ 79 (209)
T 2ql3_A 18 TILPSMLYAFTA----EYP-RASVEFRED---------TQNRLRTQLEGGELDVAIVYDLDL---SPEWQ-TVPLMTREP 79 (209)
T ss_dssp TTHHHHHHHHHH----HCT-TEEEEEEEC---------CHHHHHHHHHTTSCSEEEEESSSC---CTTEE-EEEEEEECC
T ss_pred hhHHHHHHHHHH----HCC-CceEEEEEC---------cHHHHHHHHHcCCccEEEEecCCC---CCCce-EEEeecCce
Confidence 344677777776 664 467776664 678999999999999998532211 11222 356778888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCC-cCChhHhhhc
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPT-FADLKKLRTE 567 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~-i~s~~dL~~~ 567 (753)
+++++...+.. ... .-+++||.
T Consensus 80 ~~v~~~~hpl~-------------------------------------------------------~~~~~~~~~~l~-- 102 (209)
T 2ql3_A 80 MVVLGAEHPLA-------------------------------------------------------GVDGPVRLADLA-- 102 (209)
T ss_dssp EEEEETTCGGG-------------------------------------------------------GCCSCBCGGGGT--
T ss_pred EEEEeCCCccc-------------------------------------------------------cCCCCcCHHHHh--
Confidence 88888765321 112 34788995
Q ss_pred CCeEEEecCch----HHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc-
Q 037761 568 SHFVGFQSGSF----VEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP- 642 (753)
Q Consensus 568 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~- 642 (753)
+.++....... ...++. ..+.........++.......+..|. .-+++-.......... ..++..++-
T Consensus 103 ~~~~i~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~~~~~~~~--~~~l~~~~~~ 175 (209)
T 2ql3_A 103 EHPMVLLDAPPSTNHAMDVCR-EAGFAPRVAYRTANFETARAFVGRGL----GWTLLLQRPRVDVTYE--GLPVVVKPIA 175 (209)
T ss_dssp TSCEEEECCTTHHHHHHHHHH-HHTCCCCEEEEESCHHHHHHHHHHTS----CBEEESCCCSSCBCTT--SCBEEEEEBC
T ss_pred CCCEEeeCChhHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHcCC----eEEEeeCCcccccccC--CCceEEEECC
Confidence 44444332222 223444 22333333455678888899999997 5566543211111011 124554432
Q ss_pred -cc-ccCceEEEEcCCCCCchHhHHHHHHhh
Q 037761 643 -IY-RTDGLGFAFAKDSPLVSHFSQAILLVR 671 (753)
Q Consensus 643 -~~-~~~~~~~~~~k~s~l~~~~n~~i~~l~ 671 (753)
.. ....++++.+++..........+..+.
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 206 (209)
T 2ql3_A 176 EPKPASVAVVVAWHQEATLSRVARAFIRFVT 206 (209)
T ss_dssp SSCCCCEEEEEEEETTCCCCHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEeCCCCCCHHHHHHHHHHh
Confidence 22 234567777887666666655555443
No 183
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=94.06 E-value=0.37 Score=47.70 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=51.6
Q ss_pred cCChhHhhhcCC----eEEEecCch-----HHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHH
Q 037761 558 FADLKKLRTESH----FVGFQSGSF-----VEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKV 628 (753)
Q Consensus 558 i~s~~dL~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~ 628 (753)
|+|++||. ++ ++|...+.. ....++ .+++....+... +..+...++.+|+ +|++....+....
T Consensus 125 i~si~DL~--g~~~~~~~g~~~~~~~~~~g~~~~~~-~yGl~~~~~~~~-~~~~~~~Al~~g~----vd~~~~~~p~~~~ 196 (275)
T 1sw5_A 125 VEKISDLA--EFADQLVFGSDPEFASRPDGLPQIKK-VYGFEFKEVKQM-EPTLMYEAIKNKQ----VDVIPAYTTDSRV 196 (275)
T ss_dssp CCBGGGGT--TTGGGCEEEECHHHHHSTTSHHHHHH-HHTCCCSEEEEC-CGGGHHHHHHTTS----CSEEEEETTCHHH
T ss_pred CCcHHHHH--hhhcceEeccCcccccccchHHHHHH-hcCCCcccccCC-CHHHHHHHHHcCC----CeEEEEeCCCcch
Confidence 99999995 55 555432211 111333 556654455555 5668899999999 9999988776653
Q ss_pred HHhcCCCCcEEeCc---ccccCceEEEEcCC
Q 037761 629 FLKKYSSKYTTAGP---IYRTDGLGFAFAKD 656 (753)
Q Consensus 629 ~~~~~~~~l~~~~~---~~~~~~~~~~~~k~ 656 (753)
. +. +++++.. .+..+..+.+++++
T Consensus 197 ~--~~--~l~~L~d~~~~~~~~~~~~v~~~~ 223 (275)
T 1sw5_A 197 D--LF--NLKILEDDKGALPPYDAIIIVNGN 223 (275)
T ss_dssp H--HT--TEEECBCTTCCSCCCEEEEEECTT
T ss_pred h--cC--CeEEccCCcccCCccceeeeeehh
Confidence 2 22 4555543 22233445566655
No 184
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=93.98 E-value=0.72 Score=46.20 Aligned_cols=181 Identities=6% Similarity=-0.054 Sum_probs=105.1
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEee---eeeecccceeeeccccccc
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGD---ISIVASRTDYVEFTLPYSE 485 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~---~~~t~~r~~~~~fs~p~~~ 485 (753)
.+...++..+.+ +.- ++++.+... +...++++|.+|++|+++.. ..... ..+. +.++..
T Consensus 114 ~~l~~~l~~f~~----~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~~~~---~~l~-~~~l~~ 175 (310)
T 2esn_A 114 ALLPPLMNRLQH----SAP-GVRLRLVNA---------ERKLSVEALASGRIDFALGYDEEHERLP---EGIQ-AHDWFA 175 (310)
T ss_dssp HHHHHHHHHHHH----HST-TCEEEEECC---------SSSCCHHHHHHTSSSEEEECCSTTCCCC---TTEE-EEEEEE
T ss_pred HHHHHHHHHHHH----HCC-CeEEEEEeC---------CcccHHHHHHcCCCCEEEecCcccccCC---cCcc-eeeeec
Confidence 344666666666 664 466666653 45678889999999999854 22211 1222 356778
Q ss_pred cceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhh
Q 037761 486 SGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLR 565 (753)
Q Consensus 486 ~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~ 565 (753)
..++++++...+.. . ..-+++||.
T Consensus 176 ~~~~~v~~~~~pl~-------------------------------------------------------~-~~i~~~dL~ 199 (310)
T 2esn_A 176 DRYVVVARRDHPRL-------------------------------------------------------A-GAPTLEGYL 199 (310)
T ss_dssp ECEEEEEESSCTTC-------------------------------------------------------S-SSCCHHHHH
T ss_pred cceEEEEeCCCCCc-------------------------------------------------------C-CCCCHHHHh
Confidence 88899998765421 1 245789995
Q ss_pred hcCCeEEEec-C----chHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEe
Q 037761 566 TESHFVGFQS-G----SFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTA 640 (753)
Q Consensus 566 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 640 (753)
+.++.... + .....++.+ .+.........++.......+..|. .-+++.. .......... ++..+
T Consensus 200 --~~~~i~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~-~~~~~~~~~~--~l~~~ 269 (310)
T 2esn_A 200 --AERHAVVTPWNEDSGVIDRLLAR-SGLRREVAVQLPTVLAALFLAGSTD----FLLTAPR-HAARALAEAA--GLALY 269 (310)
T ss_dssp --TSEEEEECTTCCSSCHHHHHHHH-TTCCCEEEEEESCHHHHHHHHHTSS----CEEEEEH-HHHHHHHHHH--TEEEE
T ss_pred --cCCcEEEeCCCCcccHHHHHHHh-CCCCeeEEEeCCCHHHHHHHHhcCC----eEEEcHH-HHHHHHhhcC--CceEe
Confidence 55544332 2 334556663 3333333455678888899999987 5555543 3333322221 34444
Q ss_pred Cc--ccccCceEEEEcCCCCCchHhHHHHHHhhhc
Q 037761 641 GP--IYRTDGLGFAFAKDSPLVSHFSQAILLVREN 673 (753)
Q Consensus 641 ~~--~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~ 673 (753)
+. ......++++.+++.+........+..+++.
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 304 (310)
T 2esn_A 270 PAPFDIPPYVLRLYSHVQHVGRDAHAWMIGQLKGL 304 (310)
T ss_dssp CCSSCCCCEEEEEEEECC--CCHHHHHHHHHSCCC
T ss_pred cCCCCCCCeeEEEEEeCcccCCHHHHHHHHHHHHh
Confidence 32 2233467778888877666666666555543
No 185
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=93.90 E-value=0.68 Score=46.29 Aligned_cols=181 Identities=8% Similarity=0.042 Sum_probs=107.1
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++.+... ....++..|.+|++|+++....... ....+. +.+++...+
T Consensus 105 ~~l~~~l~~f~~----~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l~-~~~L~~~~~ 168 (305)
T 3fxq_A 105 AALPLALASFAR----EFP-DVTVNVRDG---------MYPAVSPQLRDGTLDFALTAAHKHD-IDTDLE-AQPLYVSDV 168 (305)
T ss_dssp THHHHHHHHHHH----HCT-TCEEEEEEC---------CTTTTHHHHHHTSSSEEEEECCGGG-SCTTEE-EEEEEECCE
T ss_pred HHHHHHHHHHHH----HCC-CCEEEEEEC---------CHHHHHHHHHcCCCCEEEecCCCCC-CccCee-EEEeecCcE
Confidence 345666777766 664 467766653 5678899999999999985432221 011222 467788889
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++...+.. ...+++||. +
T Consensus 169 ~~v~~~~hpla---------------------------------------------------------~~~~~~dL~--~ 189 (305)
T 3fxq_A 169 VIVGQRQHPMA---------------------------------------------------------NATRLAELQ--E 189 (305)
T ss_dssp EEEEETTCTTT---------------------------------------------------------TCCSGGGGT--T
T ss_pred EEEEcCCCCCC---------------------------------------------------------CCCCHHHHh--C
Confidence 99999776532 134789994 5
Q ss_pred CeEEEec-C----chHHHHHHHhhCCCC-CceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc
Q 037761 569 HFVGFQS-G----SFVEDFLVKQLNFSR-NQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP 642 (753)
Q Consensus 569 ~~~~~~~-~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 642 (753)
.++.... + .....++.+ .+.+. ......++.......+..|. .-+++-. ........ ..++..++.
T Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~v~~g~----gia~lp~-~~~~~~~~--~~~L~~~~~ 261 (305)
T 3fxq_A 190 CRWAFSSAPRGPGAIIRNAFAR-YGLPEPKLGLVCESFLALPGVVAHSD----LLTTMPR-TLYERNAF--KDQLCSIPL 261 (305)
T ss_dssp SEEEEECCTTSTTHHHHHHHHH-TTCCCCEEEEEECCTTTHHHHHHTSS----CEEEEEH-HHHHSSTT--GGGEEECCC
T ss_pred CCeEeeCCCCCHHHHHHHHHHH-cCCCCCCceEEeCCHHHHHHHHHhCC----EEEEeeH-HHHhhhhh--cCCEEEeeC
Confidence 5554432 2 233455553 34322 23345678888899999887 5444433 22221111 235655543
Q ss_pred --ccccCceEEEEcCCCCCchHhHHHHHHhhh
Q 037761 643 --IYRTDGLGFAFAKDSPLVSHFSQAILLVRE 672 (753)
Q Consensus 643 --~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~ 672 (753)
......++++.+++.+........+..+++
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 293 (305)
T 3fxq_A 262 QDALPNPTIYVLRRHDLPVTPAAAGLIRWIQH 293 (305)
T ss_dssp SSCCCCCEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 233456778888887766666666655544
No 186
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=93.62 E-value=1.1 Score=42.05 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=49.4
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++++... +...++++|.+|++|+++..... ....+. +.+++...+
T Consensus 21 ~~lp~~l~~f~~----~~P-~v~l~l~~~---------~~~~l~~~L~~g~iDl~i~~~~~---~~~~l~-~~~l~~~~~ 82 (218)
T 2y7p_A 21 YFMPPLMEALAQ----RAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLLPE---LQTGFF-QRRLFRHRY 82 (218)
T ss_dssp HHHHHHHHHHHH----HCT-TCEEEEECC---------CTTTHHHHHHHTSSCEEEECCTT---CCTTEE-EEEEEEECE
T ss_pred HHHHHHHHHHHH----HCC-CCEEEEEeC---------CcccHHHHHhCCCceEEEecCCC---CCccee-EEEeeeccE
Confidence 455667777766 664 467777654 67889999999999999853221 122233 357888999
Q ss_pred EEEEecccC
Q 037761 489 TMLVPVKRD 497 (753)
Q Consensus 489 ~~~v~~~~~ 497 (753)
++++++..+
T Consensus 83 ~~v~~~~hp 91 (218)
T 2y7p_A 83 VCMFRKDHP 91 (218)
T ss_dssp EEEEETTCS
T ss_pred EEEEcCCCC
Confidence 999998765
No 187
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=93.61 E-value=1.8 Score=40.79 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=107.5
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+..+++..+.+ +.- ++++++... +...++++|.+|++|+++...... ....+. ..++.....
T Consensus 27 ~~l~~~l~~f~~----~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~--~~~~l~-~~~l~~~~~ 89 (228)
T 2fyi_A 27 YSLPEVIKAFRE----LFP-EVRLELIQG---------TPQEIATLLQNGEADIGIASERLS--NDPQLV-AFPWFRWHH 89 (228)
T ss_dssp HTHHHHHHHHHH----HCT-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEESSSST--TCTTEE-EEEEEEECE
T ss_pred HHHHHHHHHHHH----HCC-CcEEEEEeC---------CHHHHHHHHHcCCccEEEEecccC--CCCCce-EEEeeecce
Confidence 445677777777 664 467777764 678999999999999998532211 111222 356778888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
++++++..+.. ....-+++||. +
T Consensus 90 ~~v~~~~hpla-------------------------------------------------------~~~~i~~~dL~--~ 112 (228)
T 2fyi_A 90 SLLVPHDHPLT-------------------------------------------------------QISPLTLESIA--K 112 (228)
T ss_dssp EEEEETTCGGG-------------------------------------------------------TSSSCCHHHHT--T
T ss_pred EEEecCCCCcc-------------------------------------------------------ccCccCHHHHc--C
Confidence 99998765421 11245789995 5
Q ss_pred CeEEE-ecCchH----HHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcc
Q 037761 569 HFVGF-QSGSFV----EDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPI 643 (753)
Q Consensus 569 ~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 643 (753)
.++.. ..+... ..++. ..+.........++.......+..|. .-+++.... .... ...++..+.-.
T Consensus 113 ~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lv~~G~----Gia~lp~~~-~~~~---~~~~l~~~~~~ 183 (228)
T 2fyi_A 113 WPLITYRQGITGRSRIDDAFA-RKGLLADIVLSAQDSDVIKTYVALGL----GIGLVAEQS-SGEQ---EEENLIRLDTR 183 (228)
T ss_dssp SCEEEECTTSTTHHHHHHHHH-HTTCCCCEEEEESSHHHHHHHHHHTS----CEEEEEGGG-GSTT---CCTTEEEECCT
T ss_pred CCeEEecCCccHHHHHHHHHH-HcCCCcceEEEeCCHHHHHHHHHhCC----CEEEeehHh-hhhc---ccCCeEEEECC
Confidence 44443 333322 23343 22332233345678888889999997 666654432 2111 12246555332
Q ss_pred --cccCceEEEEcCCCCCchHhHHHHHHhhhc
Q 037761 644 --YRTDGLGFAFAKDSPLVSHFSQAILLVREN 673 (753)
Q Consensus 644 --~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~ 673 (753)
.....++++.+++.++...+...+..+.+.
T Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~ 215 (228)
T 2fyi_A 184 HLFDANTVWLGLKRGQLQRNYVWRFLELCNAG 215 (228)
T ss_dssp TTSCCEEEEEEEETTCCBCHHHHHHHHHHCSS
T ss_pred CcccceEEEEEEeCCCcCCHHHHHHHHHHHHh
Confidence 223456777888877777777776665543
No 188
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=93.17 E-value=2.9 Score=42.00 Aligned_cols=193 Identities=8% Similarity=0.040 Sum_probs=115.6
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++.+... +...++.+|.+|++|+++....... ...+. +.+......
T Consensus 106 ~~l~~~l~~f~~----~~P-~v~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~~--~~~l~-~~~L~~~~~ 168 (324)
T 1al3_A 106 YALPGVIKGFIE----RYP-RVSLHMHQG---------SPTQIAEAVSKGNADFAIATEALHL--YDDLV-MLPCYHWNR 168 (324)
T ss_dssp HTSHHHHHHHHH----HCT-EEEEEEEEC---------CHHHHHHHHHTTCCSEEEESSCCCT--TSCEE-EEEEEEECE
T ss_pred hHHHHHHHHHHH----HCC-CCEEEEEEC---------CHHHHHHHHHCCCceEEEEecCCCC--CCCee-EEEecCCce
Confidence 445677777777 664 467777664 6789999999999999985322211 12222 356777788
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++...+.. ....-+++||. +
T Consensus 169 ~~v~~~~~pl~-------------------------------------------------------~~~~~~~~dL~--~ 191 (324)
T 1al3_A 169 SIVVTPEHPLA-------------------------------------------------------TKGSVSIEELA--Q 191 (324)
T ss_dssp EEEECTTSTTT-------------------------------------------------------TTSCCCHHHHH--T
T ss_pred EEEEcCCCccc-------------------------------------------------------cCCCCCHHHHh--C
Confidence 88888765422 11245789995 5
Q ss_pred CeEEEe-cCch----HHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc-
Q 037761 569 HFVGFQ-SGSF----VEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP- 642 (753)
Q Consensus 569 ~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~- 642 (753)
.++... .+.. ...++. ..+.........++.......+..|. .-+++.... ..... ..++..++.
T Consensus 192 ~~~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~lv~~G~----Giailp~~~-~~~~~---~~~L~~~~~~ 262 (324)
T 1al3_A 192 YPLVTYTFGFTGRSELDTAFN-RAGLTPRIVFTATDADVIKTYVRLGL----GVGVIASMA-VDPVS---DPDLVKLDAN 262 (324)
T ss_dssp SEEEEECTTSTTHHHHHHHHH-HHTCCCEEEEEESSHHHHHHHHHHTS----CEEEEEGGG-CCTTT---CTTSEEEECB
T ss_pred CCeEEecCCCcHHHHHHHHHH-HcCCCCceEEEeCCHHHHHHHHHhCC----CeEEechhh-hhhhc---cCCeEEEECC
Confidence 554443 3322 234444 22333333445678888899999997 656554432 21111 225655533
Q ss_pred -ccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcC
Q 037761 643 -IYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFG 686 (753)
Q Consensus 643 -~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~ 686 (753)
......++++.+++.++...+...+..+.+.- -+.+.++++.
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~~~--~~~~~~~~~~ 305 (324)
T 1al3_A 263 GIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHL--TRDVVDTAVA 305 (324)
T ss_dssp TTBCCEEEEEEEETTCCCCHHHHHHHHHHCTTC--CHHHHHHHHH
T ss_pred CCCcceEEEEEEeCCCCCCHHHHHHHHHHHHHh--ccchhhhhhh
Confidence 22334577788888877777777777776653 3445555544
No 189
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=93.05 E-value=2 Score=44.05 Aligned_cols=156 Identities=7% Similarity=-0.079 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccC-CccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKA-QVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA 88 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~-~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~ 88 (753)
.+........+.|+++ ++.+||+. +.....++..++..+ ++|.+......+ .+.+..... +.+++.-++-
T Consensus 70 ~~~~d~~~~l~~l~~~-g~d~Ii~~-g~~~~~~~~~vA~~~Pdv~fv~id~~~~------~~Nv~sv~~-~~~eg~ylaG 140 (356)
T 3s99_A 70 AEGADAERSIKRIARA-GNKLIFTT-SFGYMDPTVKVAKKFPDVKFEHATGYKT------ADNMSAYNA-RFYEGRYVQG 140 (356)
T ss_dssp CTTHHHHHHHHHHHHT-TCSEEEEC-SGGGHHHHHHHHTTCTTSEEEEESCCCC------BTTEEEEEE-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEC-CHHHHHHHHHHHHHCCCCEEEEEecccc------CCcEEEEEe-chhHHHHHHH
Confidence 3344567777888875 89999985 344566777787775 788887643211 123333332 3445555444
Q ss_pred HH-HH-cCCeEEEEEEeeC-CcccchHHHHHHHHHhCCeEEEEeeccCCC-CchhhHHHHHHHHhcCCccEEEEEeChHH
Q 037761 89 VL-QN-FSWHEVVLMYEDT-NYGAGFISFLVDELQENDIRISHMSKIPTS-AEDFQISKELSKLSTMQTRVFIVHMNTAL 164 (753)
Q Consensus 89 ~l-~~-~~w~~vail~~d~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~d~~~~l~~l~~~~~~vIi~~~~~~~ 164 (753)
.+ .. -.-++|++|.... +........|.+.++..+..+.....+..+ .+...=......+.+.++|+|+.+....
T Consensus 141 ~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~- 219 (356)
T 3s99_A 141 VIAAKMSKKGIAGYIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST- 219 (356)
T ss_dssp HHHHHHCSSCEEEEEECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS-
T ss_pred HHHHHhcCCCEEEEECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch-
Confidence 32 11 1247999998633 233445678888888876544333333322 1222333455566667999888776653
Q ss_pred HHHHHHHHHHcCC
Q 037761 165 ASRLFALVAKNGM 177 (753)
Q Consensus 165 ~~~~~~~a~~~g~ 177 (753)
..+++|++.|.
T Consensus 220 --Gv~~aa~e~Gv 230 (356)
T 3s99_A 220 --AAIQVAHDRGI 230 (356)
T ss_dssp --HHHHHHHHTTC
T ss_pred --HHHHHHHHcCC
Confidence 57888888773
No 190
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=92.99 E-value=0.96 Score=46.16 Aligned_cols=165 Identities=8% Similarity=0.018 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCC-C-CCCCceEEEecCcHHHHHHHHHHH
Q 037761 13 CGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS-P-TEHPFFIRVTQNDSLQVKAISAVL 90 (753)
Q Consensus 13 ~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~-~-~~~~~~fr~~p~~~~~~~a~~~~l 90 (753)
.+++....++....++.+||..............+...+++.|...+...... . ..+..+ .+...+..-+..++++|
T Consensus 73 ~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di-~V~~Dn~~Ggy~A~~~L 151 (371)
T 3qi7_A 73 DSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVDV-NLGVSAEERGKVLAERS 151 (371)
T ss_dssp HHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSE-EEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCce-EEEeChHHHHHHHHHHH
Confidence 34678888888888999988755443334555666666777655443221110 0 000112 45666666777788899
Q ss_pred HHcCCeEEEEEEeeCCc----ccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHH---HHHH-----Hhc-CCccEEE
Q 037761 91 QNFSWHEVVLMYEDTNY----GAGFISFLVDELQENDIRISHMSKIPTSAEDFQISK---ELSK-----LST-MQTRVFI 157 (753)
Q Consensus 91 ~~~~w~~vail~~d~~~----g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~---~l~~-----l~~-~~~~vIi 157 (753)
...|-+++++|...... .....+.++++++++|+.+.....-.+. .+..+.. .|.. +.+ ..++ -|
T Consensus 152 i~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t-~e~G~~~a~~lL~~~~~~~~~~~~~~T-AI 229 (371)
T 3qi7_A 152 KEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN-TEEDKNKVKQFLNEDIEKQVKKYGKDI-NV 229 (371)
T ss_dssp HHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS-STHHHHHHHHHHHHHHHHHHHHHCSCC-EE
T ss_pred HHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeecCCCCc-hHHHHHHHHHHHhccccchhhccCCCc-EE
Confidence 99999999999874432 2335678999999999987655322221 2222222 2221 222 2334 44
Q ss_pred EEeChHHHHHHHHHHHHcCCCCC
Q 037761 158 VHMNTALASRLFALVAKNGMMSK 180 (753)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~~ 180 (753)
++++-..+..+++++++.|+..+
T Consensus 230 FatND~mAiG~ikal~e~Gi~VP 252 (371)
T 3qi7_A 230 FGVNEYMDEVILTKALELKYIVA 252 (371)
T ss_dssp EESSHHHHHHHHHHHHHHCCBBC
T ss_pred EECCHHHHHHHHHHHHHcCCccC
Confidence 55566678889999999997543
No 191
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=92.87 E-value=0.86 Score=44.89 Aligned_cols=151 Identities=9% Similarity=0.038 Sum_probs=99.6
Q ss_pred hHHHHHHHHcCcccEEEeeeeeecccc---------eeeec--cccccccceEEEEecccCCCCceeEEEecCcccccee
Q 037761 448 YDELLYQIKLKKFDAVVGDISIVASRT---------DYVEF--TLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLA 516 (753)
Q Consensus 448 ~~~~~~~l~~~~~Di~~~~~~~t~~r~---------~~~~f--s~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ 516 (753)
-.++-..+..|.+|+++.+--.-.|.. ..+.- -..|....+++.+|....
T Consensus 55 ~~DIp~yV~~G~~DlGItG~D~l~E~~~~~~~~~~~~~v~el~dLgfG~crl~vAvp~~~~------------------- 115 (299)
T 1h3d_A 55 DDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEA------------------- 115 (299)
T ss_dssp GGGHHHHHHTTSSSEEEEEHHHHHHHHHHHHHHTCCCCEEEEEECSCCCEEEEEEEETTSC-------------------
T ss_pred hhHHHHHHhCCCCcEEEeeeeeeeccccccccccCCCcEEEEeccCcCCEEEEEEEECCCC-------------------
Confidence 378889999999999998875433321 11221 123445556666665432
Q ss_pred eccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceec
Q 037761 517 LVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRP 596 (753)
Q Consensus 517 ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (753)
+.++++| +|++|+.........||.+ .+.. .++..
T Consensus 116 -----------------------------------------~~~~~~l--~g~RIATkyp~l~~~yf~~-~gi~-~~ii~ 150 (299)
T 1h3d_A 116 -----------------------------------------WDGPLSL--NGKRIATSYPHLLKRYLDQ-KGIS-FKSCL 150 (299)
T ss_dssp -----------------------------------------CCCGGGG--TTCEEEESCHHHHHHHHHH-HTCC-CEEEE
T ss_pred -----------------------------------------CCChHHh--CCCEEEeCcHHHHHHHHHH-cCCc-EEEEE
Confidence 6778898 6999999888889999984 4443 45555
Q ss_pred CCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCC--CC-chHhHHHHHHhhh
Q 037761 597 LSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDS--PL-VSHFSQAILLVRE 672 (753)
Q Consensus 597 ~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s--~l-~~~~n~~i~~l~~ 672 (753)
....-|.- ..-|- .|++++-..+...+-++ +|.+++ .+......++.+|.+ +. .+.++..+.+|+.
T Consensus 151 l~GsvE~a--P~~Gl----ADaIvDivsTG~TLraN---gL~~ie-~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 151 LNGSVEVA--PRAGL----ADAICDLVSTGATLEAN---GLREVE-VIYRSKACLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp CSSCTTHH--HHTTS----CSEEEEEESSCHHHHHT---TEEEEE-EEEEECEEEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCceeec--cCCCc----cceEEecccCHHHHHHC---CCEEeE-EEEeeEEEEEEeccccChhHHHHHHHHHHHHHH
Confidence 54444433 34466 89999888877776666 677774 445556667777776 22 3567777777753
No 192
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=92.01 E-value=1.2 Score=42.71 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=65.0
Q ss_pred CcCChhHhhhcCCeEEEecCchHHH----HHHHhhCC------------CC---------Cce-ecCCCHHHHHHHHhcC
Q 037761 557 TFADLKKLRTESHFVGFQSGSFVED----FLVKQLNF------------SR---------NQT-RPLSNFGEYKEALSNG 610 (753)
Q Consensus 557 ~i~s~~dL~~~~~~~~~~~~~~~~~----~~~~~~~~------------~~---------~~~-~~~~~~~~~~~~l~~g 610 (753)
.+++++||. .|.+|++..+.+.+. .|+ ..+. .. .++ +. -...+....+.+|
T Consensus 92 kiksl~dL~-~Ga~IAIpnd~sn~~RaL~lL~-~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~e-l~aaql~~al~dg 168 (246)
T 4ef1_A 92 KYKSLQEIP-DGSTIYVSSSVSDWPRVLTILE-DAGLITLKEGVDRTTATFDDIDKNTKKLKFNHE-SDPAIMTTLYDNE 168 (246)
T ss_dssp SCSSGGGSC-TTCEEEEESCGGGHHHHHHHHH-HTTSEEECTTCCGGGCCGGGEEEETTCCEEEEE-ECGGGHHHHHHTT
T ss_pred CCCCHHHcC-CCCEEEeecCCchHHHHHHHHH-HCCCeeecCCCCcCcCCHhHHhcCCCccEEeee-cCHHHHHHHhccc
Confidence 499999995 599999987765432 233 2222 00 122 22 2456788899999
Q ss_pred CCCCCeeEEEeccccHHHHHhcC-C---CCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhh
Q 037761 611 SRKGGVSAIFEEIPYIKVFLKKY-S---SKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKY 684 (753)
Q Consensus 611 ~~~~~~~a~~~~~~~~~~~~~~~-~---~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~ 684 (753)
+ +|+.+.+..+. ..-. . +.+. ....-.++--.+++++++.=.+.+.+.+.-++... +-+.+.++|
T Consensus 169 ~----vDaavin~n~a---~~agl~p~~dal~-~E~~~~~y~n~i~vr~~~~~~~~~k~lv~~~~s~~-v~~~i~~~~ 237 (246)
T 4ef1_A 169 E----GAAVLINSNFA---VDQGLNPKKDAIA-LEKESSPYANIIAVRKEDENNENVKKLVKVLRSKE-VQDWITKKW 237 (246)
T ss_dssp C----SSEEEECHHHH---HHTTCCHHHHCSE-ECSCCGGGCEEEEEEGGGTTCHHHHHHHHHHHSHH-HHHHHHHHT
T ss_pred c----ccEEEEechHH---HHcCCCCccCceE-EcCCCCCeEEEEEEeccccCCHHHHHHHHHHcCHH-HHHHHHHHc
Confidence 8 99988775332 2221 1 1222 22222233345677776555556666666666666 444445544
No 193
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=91.54 E-value=6.2 Score=39.23 Aligned_cols=177 Identities=8% Similarity=-0.003 Sum_probs=100.1
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++.+... +...++.+|.+|++|+++........ .+. +.+.....+
T Consensus 103 ~~l~~~l~~f~~----~~P-~v~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~~~---~l~-~~~L~~~~~ 164 (312)
T 2h9b_A 103 GLLPRIIHLYRQ----AHP-NLRIELYEM---------GTKAQTEALKEGRIDAGFGRLKISDP---AIK-HSLLRNERL 164 (312)
T ss_dssp TTHHHHHHHHHH----TCT-TCEEEEEEC---------CHHHHHHHHHTTSCSEEEESSCCCCT---TEE-EEEEEEEEE
T ss_pred hhHHHHHHHHHH----HCC-CcEEEEEeC---------CHHHHHHHHHcCCCCEEEEeCCCCCC---Cce-EEEeecceE
Confidence 445677777777 664 467777664 67899999999999999864332211 222 356777888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++...+.. .....+-+++||. +
T Consensus 165 ~~v~~~~hpla-----------------------------------------------------~~~~~~i~~~dL~--~ 189 (312)
T 2h9b_A 165 MVAVHASHPLN-----------------------------------------------------QMKDKGVHLNDLI--D 189 (312)
T ss_dssp EEEEETTSGGG-----------------------------------------------------GGTTTCBCGGGST--T
T ss_pred EEEEcCCCccc-----------------------------------------------------cccCCCCCHHHHc--C
Confidence 88888765321 0011225788984 5
Q ss_pred CeEEEec---Cch----HHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeC
Q 037761 569 HFVGFQS---GSF----VEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAG 641 (753)
Q Consensus 569 ~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 641 (753)
.++.... ++. ...++. ..+.........++.......+..|. .-+++.... .. ....++..++
T Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~~-~~----~~~~~l~~~~ 259 (312)
T 2h9b_A 190 EKILLYPSSPKPNFSTHVMNIFS-DHGLEPTKINEVREVQLALGLVAAGE----GISLVPAST-QS----IQLFNLSYVP 259 (312)
T ss_dssp SEEEECCCSSSSSHHHHHHHHHH-TTTCCCSEEEECSSHHHHHHHHHTTS----CBEEEEGGG-GG----BCCTTEEEEE
T ss_pred CCEEEeCCCCCchHHHHHHHHHH-HcCCCCCceEEecCHHHHHHHHHcCC----cEEEecchh-hh----cCCCCeEEEE
Confidence 5555432 122 223344 22333333456778888899999997 656654432 21 1212444432
Q ss_pred --cccccCceEEEEcCCCCCchHhHHHHHH
Q 037761 642 --PIYRTDGLGFAFAKDSPLVSHFSQAILL 669 (753)
Q Consensus 642 --~~~~~~~~~~~~~k~s~l~~~~n~~i~~ 669 (753)
+......++++.+++. ........+..
T Consensus 260 l~~~~~~~~~~l~~~~~~-~~~~~~~f~~~ 288 (312)
T 2h9b_A 260 LLDPDAITPIYIAVRNME-ESTYIYSLYET 288 (312)
T ss_dssp BCSTTCEEEEEEEEETTC-CCHHHHHHHHH
T ss_pred CCCCcccceEEEEEcCCC-CCHHHHHHHHH
Confidence 2223345677777764 33444444433
No 194
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=91.41 E-value=3.6 Score=41.27 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceee-eccccccccceEEEE
Q 037761 414 IFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYV-EFTLPYSESGVTMLV 492 (753)
Q Consensus 414 ll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~-~fs~p~~~~~~~~~v 492 (753)
.++.+++.++++.|-++++++.+.+. -+...+++++++.|.+|++..+......+...+ -|+.||.....--+.
T Consensus 20 ~~~~fa~~v~e~s~G~i~i~v~~~g~-----Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~P~~~~~~lPfl~~~~~~~~ 94 (312)
T 2xwv_A 20 AAEMFAKEVKEKSQGKIEISLYPSSQ-----LGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALPYVISNYNVAQ 94 (312)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEECTTT-----TCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGSTTTSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCCC-----CCCHHHHHHHHHCCCceEEEeCchhhhhhccchhhhcCCcccCCHHHHH
Confidence 34556666666998777777665311 135689999999999999975543332222211 234566543221000
Q ss_pred ecccCCCCceeEEEecCccccceeeccccchhhHHHH-HHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeE
Q 037761 493 PVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVI-WLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFV 571 (753)
Q Consensus 493 ~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~-w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~ 571 (753)
..-.. +..++-+.-- .=-..+.+...+...... ++. ..+|+|++|| +|+++
T Consensus 95 ~~~~~----------------------~~~~~~~~~~~~~~~g~~~l~~~~~g~~~-~~~---~~pI~s~~Dl--kGlKi 146 (312)
T 2xwv_A 95 KALFD----------------------TEFGKDLIKKMDKDLGVTLLSQAYNGTRQ-TTS---NRAINSIADM--KGLKL 146 (312)
T ss_dssp HHHHS----------------------SHHHHHHHHHHHHHHCEEEEEEEEEEEEE-EEE---SSCCCSGGGG--TTCEE
T ss_pred HHHhc----------------------CHHHHHHHHHHHHhCCeEEEEeeccCcee-eec---CCCcCCHHHh--CCCEE
Confidence 00000 0000000000 000112222223223233 332 3579999999 69999
Q ss_pred EEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 572 GFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
.+.........++ ..+ .+.+.. ...|...+|+.|. +|+.....+.+
T Consensus 147 Rv~~~~~~~~~~~-alG---a~pv~m-~~~Evy~ALq~G~----vDg~~~~~~~~ 192 (312)
T 2xwv_A 147 RVPNAATNLAYAK-YVG---ASPTPM-AFSEVYLALQTNA----VDGQENPLAAV 192 (312)
T ss_dssp EECSCHHHHHHHH-HHT---CEEEEC-CGGGHHHHHHTTS----SSEEEEEHHHH
T ss_pred EeCCCHHHHHHHH-HcC---Ceeeec-CHHHHHHHHHcCC----cceEeccHHHH
Confidence 8876444445666 333 244433 5678999999999 99998876655
No 195
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=91.37 E-value=0.99 Score=46.95 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH
Q 037761 84 KAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA 163 (753)
Q Consensus 84 ~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~ 163 (753)
..+.++++.+|.+++.||++......+..+.+.+.+++.|+++.....+..+.+.......+..+++.++|+||-.|-+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 44666778889999999987654444468889999999998875555555566677888888888888999999888765
Q ss_pred --HHHHHHHHHH
Q 037761 164 --LASRLFALVA 173 (753)
Q Consensus 164 --~~~~~~~~a~ 173 (753)
|+..++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 6677766555
No 196
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=91.23 E-value=0.62 Score=45.57 Aligned_cols=151 Identities=10% Similarity=0.084 Sum_probs=99.8
Q ss_pred HHHHHHHHcCcccEEEeeeeeecccceeee--ccccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhH
Q 037761 449 DELLYQIKLKKFDAVVGDISIVASRTDYVE--FTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFV 526 (753)
Q Consensus 449 ~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~--fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~ 526 (753)
.++-..+..|.+|+++.+--.-.|....+. .-..|....+++.+|....
T Consensus 55 ~DIp~yV~~G~~DlGItG~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~----------------------------- 105 (289)
T 2vd3_A 55 ADIPEFVADGAADLGITGYDLIVERGSDVEILEDLKYGRASLVLAAPEDST----------------------------- 105 (289)
T ss_dssp TTHHHHHHHTSSSEEEEEHHHHHHHTCCCEEEEECSCSCEEEEEEEETTSS-----------------------------
T ss_pred hhHHHHHhCCCccEEEeeeeeeeecCCCceEEecCCCCCEEEEEEEECCCC-----------------------------
Confidence 678889999999999988754333321221 1224455666666665432
Q ss_pred HHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHH
Q 037761 527 LVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEA 606 (753)
Q Consensus 527 ~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (753)
+++++||. .+++++.........||.+ .+. +.++......-|.-
T Consensus 106 -------------------------------~~~~~~l~-~~~RIATkyp~l~~~yf~~-~gi-~~~ii~l~GsvE~a-- 149 (289)
T 2vd3_A 106 -------------------------------IRGPEDIP-RGAVIATEFPGITENYLRE-HGI-DAEVVELTGSTEIA-- 149 (289)
T ss_dssp -------------------------------CCSGGGCC-TTCEEEESCHHHHHHHHHH-TTC-CCEEEECSSCGGGT--
T ss_pred -------------------------------CCCHHHhc-CCCEEEeCcHHHHHHHHHH-cCC-cEEEEECCCceeec--
Confidence 77889983 3889999888889999984 344 44566555444433
Q ss_pred HhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCC-C-CchHhHHHHHHhhh
Q 037761 607 LSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDS-P-LVSHFSQAILLVRE 672 (753)
Q Consensus 607 l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s-~-l~~~~n~~i~~l~~ 672 (753)
...|- .|++++-..+...+-++ +|.+++ .+......++.+|.+ + -.+.++..+.+|+.
T Consensus 150 p~~Gl----ADaIvDivsTG~TLraN---gL~~ie-~I~~ssA~LI~n~~s~~~k~~~i~~l~~rl~~ 209 (289)
T 2vd3_A 150 PFIGV----ADLITDLSSTGTTLRMN---HLRVID-TILESSVKLIANRESYATKSGIIEELRTGIRG 209 (289)
T ss_dssp TTTTS----CSEEEEEESSTHHHHHT---TEEEEE-EEEEECEEEEECHHHHHHSHHHHHHHHHHHHH
T ss_pred cCCCc----ccEEEEEeCChHHHHHC---CCEEeE-EEEeeEEEEEEccchhhhHHHHHHHHHHHHHH
Confidence 34566 89999888888776666 677774 444556667777765 3 23567777777653
No 197
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=91.23 E-value=3.8 Score=40.27 Aligned_cols=175 Identities=10% Similarity=-0.006 Sum_probs=100.8
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+..+++..+.+ +.- ++++.+... +...++.+|.+|++|+++...... ...+. +.+.....+
T Consensus 104 ~~l~~~l~~f~~----~~P-~i~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~ 165 (294)
T 1ixc_A 104 RSLPLLLRAFLT----STP-TATVSLTHM---------TKDEQVEGLLAGTIHVGFSRFFPR---HPGIE-IVNIAQEDL 165 (294)
T ss_dssp THHHHHHHHHHH----HCT-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEESCCCC---CTTEE-EEEEEEEEE
T ss_pred HHHHHHHHHHHH----HCC-CcEEEEEeC---------CHHHHHHHHHCCCccEEEEecCCC---CCCce-EEEEeeccE
Confidence 344667777766 664 467777664 667899999999999998543322 12222 356778888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++...+.. ....-+++||. +
T Consensus 166 ~~v~~~~~pl~-------------------------------------------------------~~~~~~~~dL~--~ 188 (294)
T 1ixc_A 166 YLAVHRSQSGK-------------------------------------------------------FGKTCKLADLR--A 188 (294)
T ss_dssp EEEEEGGGGGG-------------------------------------------------------TCSEECGGGGT--T
T ss_pred EEEEeCCCccc-------------------------------------------------------cCCccCHHHHc--C
Confidence 99998775421 11245788984 5
Q ss_pred CeEEEec---CchH----HHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEe-
Q 037761 569 HFVGFQS---GSFV----EDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTA- 640 (753)
Q Consensus 569 ~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~- 640 (753)
.++.... +... ..++. ..+.........++.......+..|. .-+++.... ......++..+
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~~-----~~~~~~~l~~~~ 258 (294)
T 1ixc_A 189 VELTLFPRGGRPSFADEVIGLFK-HAGIEPRIARVVEDATAALALTMAGA----ASSIVPASV-----AAIRWPDIAFAR 258 (294)
T ss_dssp CEEEECCCSSSSCHHHHHHHHHH-HTTCCCEEEEECSSHHHHHHHHHTTS----CBEEEEHHH-----HTSCCTTEEEEE
T ss_pred CCEEeeCCCCCchHHHHHHHHHH-HCCCCcceeeecCCHHHHHHHHHcCC----eEEEechhh-----hhcCCCceEEEE
Confidence 5555443 2222 23344 22333233456778888999999997 655554322 11122355543
Q ss_pred -CcccccCceEEEEcCCCCCchHhHHHHHH
Q 037761 641 -GPIYRTDGLGFAFAKDSPLVSHFSQAILL 669 (753)
Q Consensus 641 -~~~~~~~~~~~~~~k~s~l~~~~n~~i~~ 669 (753)
........++++.+++. ........+..
T Consensus 259 l~~~~~~~~~~l~~~~~~-~~~~~~~f~~~ 287 (294)
T 1ixc_A 259 IVGTRVKVPISCIFRKEK-QPPILARFVEH 287 (294)
T ss_dssp ECCTTCEEEEEEEEESSS-CCHHHHHHHHH
T ss_pred CcCCCcceeEEEEEcCCC-CCHHHHHHHHH
Confidence 22222445677777764 34444444433
No 198
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=91.11 E-value=0.89 Score=47.01 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=43.6
Q ss_pred HHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCccc----ccCceEEEEcC----CCC-CchH----hHHHHHH
Q 037761 603 YKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIY----RTDGLGFAFAK----DSP-LVSH----FSQAILL 669 (753)
Q Consensus 603 ~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~k----~s~-l~~~----~n~~i~~ 669 (753)
...+|.+|+ +|+++...+......+. +.+++...- ......+++++ ..| +... +.+....
T Consensus 210 ~~~aL~~G~----vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~ 282 (365)
T 2de3_A 210 QAAVLASGD----VDALYSWLPWAGELQAT---GARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLW 282 (365)
T ss_dssp HHHHHHSSS----CSEEEEEHHHHHHHHHT---TEEESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC----cCEEEEcchhHHHHHhC---CCEEEEeCcccCCCCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 688999999 99999887765554332 344443321 11233556663 355 4444 5555566
Q ss_pred hhhcchHHHHHHHhhcC
Q 037761 670 VRENQTRMDRIEKKYFG 686 (753)
Q Consensus 670 l~~~G~~~~~~~~~~~~ 686 (753)
+.++.-...++..++.+
T Consensus 283 ~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 283 ARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHHCHHHHHHHHHHHhC
Confidence 66552134556666654
No 199
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=91.09 E-value=8.2 Score=38.46 Aligned_cols=176 Identities=10% Similarity=0.092 Sum_probs=98.9
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++.+... +...++.+|.+|++|+++....... ..+. ..+.....+
T Consensus 103 ~~l~~~l~~f~~----~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~ 164 (313)
T 2h98_A 103 GLLPEIIYLFRQ----QNP-EIHIELIEC---------GTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQL 164 (313)
T ss_dssp TTHHHHHHHHHH----HCT-TSEEEEEEC---------CHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEE
T ss_pred hHHHHHHHHHHH----HCC-CeEEEEEeC---------ChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcE
Confidence 345677777776 654 466766654 6789999999999999985432221 1222 356777888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++...+.. .....+-+++||. +
T Consensus 165 ~~v~~~~hpl~-----------------------------------------------------~~~~~~i~~~dL~--~ 189 (313)
T 2h98_A 165 KLAIHKHHHLN-----------------------------------------------------QFAATGVHLSQII--D 189 (313)
T ss_dssp EEEEETTSGGG-----------------------------------------------------GGTTSCBCGGGGT--T
T ss_pred EEEEcCCCccc-----------------------------------------------------ccCCCCcCHHHHc--C
Confidence 88888764321 0001125788995 5
Q ss_pred CeEEEec-C--ch----HHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEe-
Q 037761 569 HFVGFQS-G--SF----VEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTA- 640 (753)
Q Consensus 569 ~~~~~~~-~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~- 640 (753)
.++.... . .. ...++. ..+.........++.......+..|. .-+++.... .. ....++..+
T Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~~-~~----~~~~~l~~~~ 259 (313)
T 2h98_A 190 EPMLLYPVSQKPNFATFIQSLFT-ELGLVPSKLTEIREIQLALGLVAAGE----GVCIVPASA-MD----IGVKNLLYIP 259 (313)
T ss_dssp SCEEECCCSSSSSHHHHHHHHHH-HTTCCCSCEEECSCHHHHHHHHHTTS----CBEEEEGGG-GG----SCCTTEEEEE
T ss_pred CCEEEecCCCCchHHHHHHHHHH-HcCCCCCceEEeCCHHHHHHHHHcCC----cEEEeehhh-hh----cCCCCeEEEE
Confidence 5454422 1 22 233444 23333334456788888999999997 666654432 21 122244433
Q ss_pred -CcccccCceEEEEcCCCCCchHhHHHHH
Q 037761 641 -GPIYRTDGLGFAFAKDSPLVSHFSQAIL 668 (753)
Q Consensus 641 -~~~~~~~~~~~~~~k~s~l~~~~n~~i~ 668 (753)
.+......++++.+++. ....+...+.
T Consensus 260 l~~~~~~~~~~l~~~~~~-~~~~~~~f~~ 287 (313)
T 2h98_A 260 ILDDDAYSPISLAVRNMD-HSNYIPKILA 287 (313)
T ss_dssp BCSTTCEEEEEEEEETTC-CCTHHHHHHH
T ss_pred CCCCCccceEEEEEcCCC-CCHHHHHHHH
Confidence 22223345677777764 2333443333
No 200
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=91.00 E-value=0.52 Score=44.36 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=48.7
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+..+++..+.+ +.- ++++++... ....++++|.+|++|+++...... ...+. +.++....+
T Consensus 18 ~~l~~~l~~f~~----~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~ 79 (219)
T 1i6a_A 18 YLLPHIIPMLHQ----TFP-KLEMYLHEA---------QTHQLLAQLDSGKLDAVILALVKE---SEAFI-EVPLFDEPM 79 (219)
T ss_dssp HHHHHHHHHHHH----HCT-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEEECCGG---GTTSE-EEEEEEEEE
T ss_pred hhhhHHHHHHHH----HCC-CeEEEEEEC---------ChHHHHHHHHcCCeeEEEecCCCC---CCCcc-eeeeecccE
Confidence 445667777766 664 467777664 788999999999999998532211 12222 356778888
Q ss_pred EEEEecccC
Q 037761 489 TMLVPVKRD 497 (753)
Q Consensus 489 ~~~v~~~~~ 497 (753)
++++++..+
T Consensus 80 ~~v~~~~hp 88 (219)
T 1i6a_A 80 LLAIYEDHP 88 (219)
T ss_dssp EEEEETTSG
T ss_pred EEEEcCCCc
Confidence 999987754
No 201
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=90.77 E-value=1.5 Score=45.77 Aligned_cols=88 Identities=10% Similarity=0.151 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCccc--chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGA--GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
.+.++++.+|.+++.||++...+.. +..+.+.+.+++.|+++.....+..+.+.......+..+++.++|+||-.|-+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3566777788899988887665555 57899999999999887554445555567788888899999999999988765
Q ss_pred H--HHHHHHHHH
Q 037761 163 A--LASRLFALV 172 (753)
Q Consensus 163 ~--~~~~~~~~a 172 (753)
. |+..++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 4 677776654
No 202
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=90.59 E-value=2.2 Score=42.81 Aligned_cols=174 Identities=9% Similarity=-0.005 Sum_probs=96.5
Q ss_pred eehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccceE
Q 037761 410 FCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVT 489 (753)
Q Consensus 410 ~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~ 489 (753)
+...++..+.+ +.- .+++.+... +...++.+|.+|++|+++....... ..+. +.++....++
T Consensus 119 ~l~~~l~~f~~----~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~ 180 (315)
T 1uth_A 119 FMPPLMEALAQ----RAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLLPELQ---TGFF-QRRLFRHRYV 180 (315)
T ss_dssp HHHHHHHHHHH----HCT-TCEEEEECT---------TSSCHHHHHHHTSCCEEEECCTTCC---TTEE-EEEEEEECEE
T ss_pred HHHHHHHHHHH----HCC-CcEEEEEeC---------CcccHHHHHHCCCCCEEEecCCCCC---CCce-EEEeeccceE
Confidence 44566666666 654 466666653 5678899999999999985432211 1222 3567778888
Q ss_pred EEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCC
Q 037761 490 MLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESH 569 (753)
Q Consensus 490 ~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~ 569 (753)
++++...+.. . ..-+++||. +.
T Consensus 181 ~v~~~~hpl~-------------------------------------------------------~-~~i~~~dL~--~~ 202 (315)
T 1uth_A 181 CMFRKDHPSA-------------------------------------------------------K-SPMSLKQFS--EL 202 (315)
T ss_dssp EEEETTCSSC-------------------------------------------------------C-SSCCHHHHH--HS
T ss_pred EEEeCCCCCc-------------------------------------------------------C-CCCCHHHHh--cC
Confidence 8888765422 1 235788985 44
Q ss_pred eEE-Eec-C---chHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc--
Q 037761 570 FVG-FQS-G---SFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP-- 642 (753)
Q Consensus 570 ~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-- 642 (753)
++. +.. + .....++.+ .+.........++.......+..|. .-+++.. ........ ..++..++.
T Consensus 203 ~~i~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~v~~g~----giailp~-~~~~~~~~--~~~l~~~~~~~ 274 (315)
T 1uth_A 203 EHVGVVALNTGHGEVDGLLER-AGIKRRMRLVVPHFIAIGPILHSTD----LIATVPQ-RFAVRCEV--PFGLTTSPHPA 274 (315)
T ss_dssp EEEEECCTTSGGGGHHHHHHH-TTCCCEEEEEESSSTTHHHHHHTSS----CBEEEEH-HHHHHHTT--TTTEEEEECSS
T ss_pred CeEEEecCCCCCCchhHHHHh-cCCCceEEEECCcHHHHHHHHhcCC----EEEEcHH-HHHHHHhh--cCCceEeCCCC
Confidence 332 221 1 234455652 3333223345567778888888887 5555433 22222222 124555432
Q ss_pred ccccCceEEEEcCCCCCchHhHHHH
Q 037761 643 IYRTDGLGFAFAKDSPLVSHFSQAI 667 (753)
Q Consensus 643 ~~~~~~~~~~~~k~s~l~~~~n~~i 667 (753)
......++++.+++.+........+
T Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~f~ 299 (315)
T 1uth_A 275 KLPDIAINLFWHAKYNRDPGNMWLR 299 (315)
T ss_dssp CCCCEEEEEEEEGGGTTCHHHHHHH
T ss_pred CCCCccEEEEECCccCCChHHHHHH
Confidence 2233456777777654444433333
No 203
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=89.79 E-value=5.7 Score=36.77 Aligned_cols=176 Identities=6% Similarity=-0.076 Sum_probs=99.4
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+..+++..+.+ +.- ++++.+... +. ..+|.+|++|+++....... ..+. +.++....+
T Consensus 25 ~~l~~~l~~f~~----~~P-~i~l~i~~~---------~~---~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~~~~ 83 (219)
T 3kos_A 25 GCLFPLLSDFKR----SYP-HIDLHISTH---------NN---RVDPAAEGLDYTIRYGGGAW---HDTD-AQYLCSALM 83 (219)
T ss_dssp HTHHHHHHHHHH----HCT-TEEEEEEEE---------CS---CCCHHHHTCSEEEEEECSCC---TTEE-EEEEEECCE
T ss_pred HHHHhHHHHHHH----HCC-CceEEEEec---------cC---ccccccCCccEEEEeCCCCC---CCce-EEEecccce
Confidence 345667777766 664 356655543 11 12678999999985432222 1222 456777778
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++..... ..-+++||. +
T Consensus 84 ~~v~~p~~~~----------------------------------------------------------~~~~~~~L~--~ 103 (219)
T 3kos_A 84 SPLCSPTLAS----------------------------------------------------------QIQTPADIL--K 103 (219)
T ss_dssp EEEBCHHHHT----------------------------------------------------------TCSSGGGGG--G
T ss_pred EEEeChHHhh----------------------------------------------------------ccCCHHHHh--c
Confidence 8887733211 246788995 4
Q ss_pred CeE-EEecCchHHHHHHHhhCCCC---CceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcE-EeCcc
Q 037761 569 HFV-GFQSGSFVEDFLVKQLNFSR---NQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYT-TAGPI 643 (753)
Q Consensus 569 ~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~-~~~~~ 643 (753)
.++ ....+.....++.+...... ......++.......+..|. .-+++....... ..... .+. ...+.
T Consensus 104 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~~~~-~~~~~--~l~~~~~~~ 176 (219)
T 3kos_A 104 FPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGM----GVAIAPVRMFTH-LLSSE--RIVQPFLTQ 176 (219)
T ss_dssp SCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTS----CBEEEEGGGCHH-HHHTT--SSBCCCCCC
T ss_pred CceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCC----CeEeehHHhhHH-HHHcC--CeeccccCC
Confidence 433 34455556666664221111 12355678889999999997 666655544433 33332 222 22223
Q ss_pred cccCceEEEEcCCCCCchHhHHHHHHhhh
Q 037761 644 YRTDGLGFAFAKDSPLVSHFSQAILLVRE 672 (753)
Q Consensus 644 ~~~~~~~~~~~k~s~l~~~~n~~i~~l~~ 672 (753)
.....++++.+++.+........+..+.+
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 205 (219)
T 3kos_A 177 IDLGSYWITRLQSRPETPAMREFSRWLTG 205 (219)
T ss_dssp BCSCEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEecccccCCHHHHHHHHHHHH
Confidence 33446778888887766666666555444
No 204
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=89.65 E-value=11 Score=36.68 Aligned_cols=71 Identities=8% Similarity=0.005 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccc-eeeeccccccccceEE
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRT-DYVEFTLPYSESGVTM 490 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~-~~~~fs~p~~~~~~~~ 490 (753)
.+++..+.+ +.- .+++++... +..+++.+|.+|++|+++........+. ..+. ..++....+++
T Consensus 43 ~~~l~~f~~----~~P-~i~v~i~~~---------~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~ 107 (290)
T 1twy_A 43 DVLAEKYNQ----QHP-ETYVAVQGV---------GSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAI 107 (290)
T ss_dssp HHHHHHHHH----HCT-TCEEEEEES---------CHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEE
T ss_pred HHHHHHHHh----hCC-CceEEEEec---------CcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEE
Confidence 344444444 652 356666553 6788999999999999985433222110 1222 35677888888
Q ss_pred EEecccC
Q 037761 491 LVPVKRD 497 (753)
Q Consensus 491 ~v~~~~~ 497 (753)
++++..+
T Consensus 108 v~~~~~p 114 (290)
T 1twy_A 108 VVNQANP 114 (290)
T ss_dssp EECTTCC
T ss_pred EECCCCC
Confidence 8887654
No 205
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=89.25 E-value=2.5 Score=41.11 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=55.3
Q ss_pred CcCChhHhhhc--CCeEEEecCchHHHHHH---Hhh-CCCCCceecCC-CHH----HHHHHHhcCCCCCCeeEEEecccc
Q 037761 557 TFADLKKLRTE--SHFVGFQSGSFVEDFLV---KQL-NFSRNQTRPLS-NFG----EYKEALSNGSRKGGVSAIFEEIPY 625 (753)
Q Consensus 557 ~i~s~~dL~~~--~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-~~~----~~~~~l~~g~~~~~~~a~~~~~~~ 625 (753)
.|+|++||.+. |+.+|+..|........ +.+ ++. .+.... +.. +...++.+|+ .+++....+.
T Consensus 95 ~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~y~gL~--~~~~v~~s~~~m~~~l~~A~~~g~----~~v~~~w~p~ 168 (256)
T 3l6g_A 95 NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLK--DWKLVPSSSGAMTVALGEAIKQHK----DIVITGWSPH 168 (256)
T ss_dssp CCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGGGT--TCEEECCCHHHHHHHHHHHHHTTC----CCCEEEEESC
T ss_pred CCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHhcCCCC--CeEEecCCHHHHHHHHHHHHHCCC----CEEEEeecCc
Confidence 49999999422 56788888776443222 233 332 122222 322 2347888998 9988887776
Q ss_pred HHHHHhcCCCCcEEeCcc---c-ccCceEEEEcCC----CC-CchHhHHH
Q 037761 626 IKVFLKKYSSKYTTAGPI---Y-RTDGLGFAFAKD----SP-LVSHFSQA 666 (753)
Q Consensus 626 ~~~~~~~~~~~l~~~~~~---~-~~~~~~~~~~k~----s~-l~~~~n~~ 666 (753)
...- ++ +++++..+ + ..+....+++++ .| +.+.|++.
T Consensus 169 ~~~~--~~--~l~~LeDpk~~~~~~~~~~~vvr~~~~~~~P~~~~~L~~~ 214 (256)
T 3l6g_A 169 WMFN--KY--DLKYLADPKGTMGTSENINTIVRKGLKKENPEAYKVLDKF 214 (256)
T ss_dssp THHH--HS--CEEECBCTTCTTCCCEEEEEEEETTHHHHCHHHHHHHHHC
T ss_pred hhhh--hc--CeEEecCCccccCCcceEEEeechhHHHHChHHHHHHHhc
Confidence 5542 22 45555432 2 223445566654 45 55555544
No 206
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=89.22 E-value=2.4 Score=42.22 Aligned_cols=119 Identities=8% Similarity=-0.024 Sum_probs=60.4
Q ss_pred CcCChhHhhhcCCeEEEecCchHHHHHHH---hhCCC--------------------CCceecCCCHHHHHHHHhcCCCC
Q 037761 557 TFADLKKLRTESHFVGFQSGSFVEDFLVK---QLNFS--------------------RNQTRPLSNFGEYKEALSNGSRK 613 (753)
Q Consensus 557 ~i~s~~dL~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------~~~~~~~~~~~~~~~~l~~g~~~ 613 (753)
.|+|++||. .|++|++..+++.+..+.. ..+.- +.+++.. +..+...++ ++
T Consensus 127 ~iksl~DL~-~Gk~IAip~~~s~~~~~l~lL~~~Gli~l~~~~~~~~t~~dI~~np~~v~~v~~-~~~~~~~al--~~-- 200 (295)
T 1p99_A 127 KIKDVKKVK-DGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAV-DAQQTARAL--SD-- 200 (295)
T ss_dssp SCSCGGGCC-TTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEEE-CGGGTTGGG--GT--
T ss_pred CCCChHHcC-CCCEEEecCCCcHHHHHHHHHHHCCCccccCCCCCcCChhhhhcCCCceEEEEc-CHHHHHHHh--hc--
Confidence 599999994 4999999887765544331 22220 1122222 233444444 45
Q ss_pred CCeeEEEeccccHHHHHhcC-CC-CcEEeC-c-cc-c-cCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcC
Q 037761 614 GGVSAIFEEIPYIKVFLKKY-SS-KYTTAG-P-IY-R-TDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFG 686 (753)
Q Consensus 614 ~~~~a~~~~~~~~~~~~~~~-~~-~l~~~~-~-~~-~-~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~ 686 (753)
+|+.+.+...+.. ... .. ...... . .. . .+...++++++..-.+.+.+.+..++... ..+.+.++|-+
T Consensus 201 --VDaa~i~~~~a~~--ag~~~~~~~i~~e~~~~~~~~~~~n~ivvr~~~~~~~~vk~l~~a~~s~e-v~~~i~~~~~g 274 (295)
T 1p99_A 201 --VDIAVINNGVATK--AGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKE-AQKALQEDVKD 274 (295)
T ss_dssp --SSEEEECHHHHHH--TTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCHHHHHHHHHHHSHH-HHHHHHHHHTT
T ss_pred --CCEEEECcHHHHH--cCCCcccceEEecCCcccCCCceeEEEEEeCCccChHHHHHHHHHHCCHH-HHHHHHHhcCC
Confidence 8988876543321 111 11 222222 1 11 1 23334667765334455666666666666 55556665543
No 207
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=89.19 E-value=14 Score=34.72 Aligned_cols=69 Identities=6% Similarity=-0.058 Sum_probs=48.6
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++.+... +..+++.+|.+|++|+++..... . .+ -+.++....+
T Consensus 40 ~~l~~~l~~f~~----~~P-~i~l~i~~~---------~~~~~~~~L~~g~~Dl~i~~~~~-~----~~-~~~~l~~~~~ 99 (238)
T 3onm_A 40 TLLPFLLNRVAT----LYP-RLAIDVRVK---------RSPFIADMLSSGEVDLAITTAKV-D----SH-PHVILRTSPT 99 (238)
T ss_dssp THHHHHHHHHHH----HCT-TCCEEEEEC---------CHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEEECE
T ss_pred HHHHHHHHHHHH----HCC-CcEEEEEEC---------CHHHHHHHHHCCCccEEEEecCC-C----Cc-ceEEeecCCE
Confidence 344666666666 664 467777664 78899999999999999854322 1 12 2467788889
Q ss_pred EEEEecccC
Q 037761 489 TMLVPVKRD 497 (753)
Q Consensus 489 ~~~v~~~~~ 497 (753)
++++++..+
T Consensus 100 ~~v~~~~~~ 108 (238)
T 3onm_A 100 LWYCSVDYQ 108 (238)
T ss_dssp EEEEETTCC
T ss_pred EEEEcCCCC
Confidence 999987754
No 208
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=88.80 E-value=2 Score=42.85 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=39.7
Q ss_pred cCChhHhhhc-----CCeEEEecCchHHHH----HH-HhhCCCCCceecCCCHH----HHHHHHhcCCCCCCeeEEEecc
Q 037761 558 FADLKKLRTE-----SHFVGFQSGSFVEDF----LV-KQLNFSRNQTRPLSNFG----EYKEALSNGSRKGGVSAIFEEI 623 (753)
Q Consensus 558 i~s~~dL~~~-----~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~~~~~a~~~~~ 623 (753)
|+|++||.+. |+.+|+..|+..... ++ +.+++.+.+++. .+.. +...++.+|+ .+++....
T Consensus 105 I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~-~~~~~~~a~~~~A~~~g~----~~v~~~w~ 179 (298)
T 2rin_A 105 IKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVE-SSEQGMLAQVARAEKSGD----PIVFLGWE 179 (298)
T ss_dssp CCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEEC-CCHHHHHHHHHHHHHTTC----CCEEEEEE
T ss_pred CCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceecc-CCHHHHHHHHHHHHHCCC----CEEEEEec
Confidence 8999999421 778888777765443 33 134553223332 2222 3356777888 99988877
Q ss_pred ccHH
Q 037761 624 PYIK 627 (753)
Q Consensus 624 ~~~~ 627 (753)
+...
T Consensus 180 p~~~ 183 (298)
T 2rin_A 180 PHPM 183 (298)
T ss_dssp SSTH
T ss_pred cCch
Confidence 7633
No 209
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=88.38 E-value=2.2 Score=42.76 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=40.6
Q ss_pred cCChhHhh--h---------c--CCeEEEecCchHHH----HHHHhhCCCCCceecCCCH-----HHHHHHHhcCCCCCC
Q 037761 558 FADLKKLR--T---------E--SHFVGFQSGSFVED----FLVKQLNFSRNQTRPLSNF-----GEYKEALSNGSRKGG 615 (753)
Q Consensus 558 i~s~~dL~--~---------~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~g~~~~~ 615 (753)
|+|++||. + . |+.+++..|+.... .++ .+++.. ++...... .+...++.+|+
T Consensus 108 i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~-~yGL~~-~~~~~~~s~~~~~~~~~~A~~~g~---- 181 (309)
T 1r9l_A 108 ITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLA-AYELTN-TVTHNQGNYAAMMADTISRYKEGK---- 181 (309)
T ss_dssp CCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHH-HTTCTT-TEEEECSCHHHHHHHHHHHHHTTC----
T ss_pred CCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHH-hcCCCC-ceEEcCCCHHHHHHHHHHHHHCCC----
Confidence 89999996 1 1 24567777776544 333 455543 34433332 25667888998
Q ss_pred eeEEEeccccHHH
Q 037761 616 VSAIFEEIPYIKV 628 (753)
Q Consensus 616 ~~a~~~~~~~~~~ 628 (753)
.+++....+....
T Consensus 182 ~~v~~~w~P~~~~ 194 (309)
T 1r9l_A 182 PVFYYTWTPYWVS 194 (309)
T ss_dssp CCEEEEEESSSHH
T ss_pred CEEEEeecCchHh
Confidence 9999887776444
No 210
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=88.24 E-value=8.6 Score=39.21 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHhc-CCccceEEEecCCCCCCCCCChHHHHHHHH-cC-cccEEEeeeeeecccc---eeeeccccccc
Q 037761 412 MEIFNATLEIVEEKL-GMKIHPQLVPYEDENGEMAGTYDELLYQIK-LK-KFDAVVGDISIVASRT---DYVEFTLPYSE 485 (753)
Q Consensus 412 ~dll~~ia~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~Di~~~~~~~t~~r~---~~~~fs~p~~~ 485 (753)
-+.++.|++.++++. |.++++.+- ....++.++. +| .+|+.++.-.-..++. ...+...++..
T Consensus 54 ~~~~~~l~~~Fe~~~pgv~V~~~~g-----------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~ 122 (354)
T 3k6v_A 54 SVPFEELEAEFEAQHPGVDVQREAA-----------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFAR 122 (354)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEE-----------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeC-----------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeEC
Confidence 356777777777787 866555444 3467778885 35 6999875422111111 11233457888
Q ss_pred cceEEEEecccC
Q 037761 486 SGVTMLVPVKRD 497 (753)
Q Consensus 486 ~~~~~~v~~~~~ 497 (753)
+.+++++++.++
T Consensus 123 n~lVliv~~~~p 134 (354)
T 3k6v_A 123 NQMILAYTNESK 134 (354)
T ss_dssp CCEEEEECTTST
T ss_pred CeEEEEEECCCc
Confidence 899999998754
No 211
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=88.10 E-value=1.7 Score=44.03 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceee-eccccccccc-----e
Q 037761 415 FNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYV-EFTLPYSESG-----V 488 (753)
Q Consensus 415 l~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~-~fs~p~~~~~-----~ 488 (753)
++.+++.++++.|-++++++.+.+. -+...+++++++.|.+|++..+......+...+ -|+.||.... .
T Consensus 27 ~~~fa~~v~e~s~G~i~i~v~~~g~-----Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~~~lPfl~~~~~~~~~ 101 (327)
T 2hpg_A 27 FLKWAKAVEEKTNGDVRIEVFPSSQ-----LGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGVMNLAYFIDFMGAKTP 101 (327)
T ss_dssp HHHHHHHHHHHTTTSEEEEEECCCC-----SCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGGGGSTTHHHHTTCCSH
T ss_pred HHHHHHHHHHHcCCcEEEEEecCcc-----CCCHHHHHHHHhCCCccEEEechHhhhhhCccHHhccCCeEECCCCCCcH
Confidence 3446666666888777777665311 124578999999999999976544333332222 2345665432 0
Q ss_pred EEE----EecccCCCCceeEEEecCccccceeeccccchhhHHHHHHH-HHHHhhhc-eeeeeeeeEEeeccCCCcCChh
Q 037761 489 TML----VPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLW-LAFILMQS-YTASLSSILTVDQLEPTFADLK 562 (753)
Q Consensus 489 ~~~----v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l-~~lvl~~~-Y~a~L~s~lt~~~~~~~i~s~~ 562 (753)
--+ ...-.. . .++-+.--+-- ..+.+... |......+.+ ..+|+|++
T Consensus 102 ~~~~~~~~~~~~g-~----------------------~~~~l~~~~~~~~g~~~L~~~~~~g~~~~~~----~~pI~s~~ 154 (327)
T 2hpg_A 102 EEAIEVLKKIKQS-P----------------------TMQKWLKELEQRFGIKVLSFYWVQGYRHFVT----NKPIRKPE 154 (327)
T ss_dssp HHHHHHHHHHHTS-H----------------------HHHHHHHHHHHHHCEEEEEEEEEEEEEEEEE----SSCCSSGG
T ss_pred HHHHHHHHHHHcC-H----------------------HHHHHHHHHHhhCCeEEEEEeccCcceeEec----CCCCCCHH
Confidence 000 000000 0 00000000000 11222222 3333333333 35799999
Q ss_pred HhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 563 KLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 563 dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
|| +|+++.+..+......++ ..+ .+.+.. ...|...+|+.|. +|+...+...+
T Consensus 155 DL--kG~KiRv~~~~~~~~~~~-alG---a~pv~m-~~~Evy~ALq~G~----VDg~~~p~~~~ 207 (327)
T 2hpg_A 155 DL--NGLRIRTPGAPAWQESIR-SLG---AIPVAV-NFGEIYTAVQTRA----VDGAELTYANV 207 (327)
T ss_dssp GG--TTCEEECCSSHHHHHHHH-HHT---SEEECC-CGGGHHHHHHTTS----CSEEEECHHHH
T ss_pred HH--CCCEEEeCCCHHHHHHHH-HcC---CEeeec-CHHHHHHHHHcCC----eeEEECCHHHH
Confidence 99 699998765445556666 343 244433 5678999999999 99999865544
No 212
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=87.83 E-value=2.2 Score=42.24 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=42.9
Q ss_pred cCCeEEEe-cCchHHHHHHH---hhCCCCCceecCC-CHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcC
Q 037761 567 ESHFVGFQ-SGSFVEDFLVK---QLNFSRNQTRPLS-NFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKY 633 (753)
Q Consensus 567 ~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~ 633 (753)
+|++|++. .++..+..++. ..+. +.++.... +..+...++.+|+ +|+.+...+.......+.
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~----vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGK----VNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTS----CSEEEECTTHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCC----CCEEEecccHHHHHHhhC
Confidence 69999985 55554443332 2344 45555555 6899999999999 999998888776655443
No 213
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=87.74 E-value=4.8 Score=40.42 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=17.1
Q ss_pred ChHHHHHHHHcCcccEEE
Q 037761 447 TYDELLYQIKLKKFDAVV 464 (753)
Q Consensus 447 ~~~~~~~~l~~~~~Di~~ 464 (753)
++.+++++|++|++|++.
T Consensus 44 dy~~ci~ai~~g~aD~~~ 61 (327)
T 1ryo_A 44 SYLDCIRAIAANEADAVT 61 (327)
T ss_dssp SHHHHHHHHHTTSCCBEE
T ss_pred CHHHHHHHHHcCCCcEEE
Confidence 799999999999999996
No 214
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=87.71 E-value=1.5 Score=45.77 Aligned_cols=89 Identities=7% Similarity=0.163 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA- 163 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~- 163 (753)
.+.++++.+|.+++.|+++......+..+.+.+.+++.|+++.....+..+.+.......+..+++.++|+||-.|-+.
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv 100 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSP 100 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 3556677778889988886554444578889999999998876555555556677888888889889999999887644
Q ss_pred -HHHHHHHHHH
Q 037761 164 -LASRLFALVA 173 (753)
Q Consensus 164 -~~~~~~~~a~ 173 (753)
|+..++....
T Consensus 101 ~D~aK~iA~~~ 111 (386)
T 1rrm_A 101 QDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7777776555
No 215
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=87.32 E-value=2.1 Score=40.81 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHH
Q 037761 11 KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVL 90 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l 90 (753)
++...+..+.+.+.+.++.+|+-+.+|.. .++..+-+..++|++... .+.++.+
T Consensus 58 ~~~~~l~~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a 111 (228)
T 1jfl_A 58 DPRPQLIWTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISMI-------------------------EETAKKV 111 (228)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCHH-------------------------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEechH-------------------------HHHHHHH
Confidence 34444444444445559999998776665 666677777888888641 3344434
Q ss_pred HHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeec-------------cCCCC---chhhHHHHHHHHhcCCcc
Q 037761 91 QNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSK-------------IPTSA---EDFQISKELSKLSTMQTR 154 (753)
Q Consensus 91 ~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~-------------~~~~~---~~~d~~~~l~~l~~~~~~ 154 (753)
...+-++|+++.+.... ....+++.+++.|+++..... +..+. ....+...+..+.+.++|
T Consensus 112 ~~~~~~rigvlaT~~T~---~~~~y~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~g~d 188 (228)
T 1jfl_A 112 KELGFKKAGLLATTGTI---VSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAE 188 (228)
T ss_dssp HHTTCSEEEEECCHHHH---HHTHHHHHHHHTTCEEECCCHHHHHHHHHHHHTTGGGTCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHcCCCeEEEEecHHHh---hhhHHHHHHHHCCCeEEccCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHCCcC
Confidence 33366889888754321 224566677777877532110 00010 113344455555556677
Q ss_pred EEEEEeCh
Q 037761 155 VFIVHMNT 162 (753)
Q Consensus 155 vIi~~~~~ 162 (753)
+|++.|..
T Consensus 189 ~iiLGCT~ 196 (228)
T 1jfl_A 189 CIIAGCTE 196 (228)
T ss_dssp EEEECSHH
T ss_pred EEEECCCC
Confidence 77776544
No 216
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=86.99 E-value=3 Score=43.72 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCccc-chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGA-GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA 163 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~ 163 (753)
.+.++++.+|.+++.||+++...-. +..+.+.+.+++.|+++.....+.++.+.......+..+++.++|+||-.|-+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 3556777788899988886443333 467889999999998875444444455667888888889999999999887654
Q ss_pred --HHHHHHHHH
Q 037761 164 --LASRLFALV 172 (753)
Q Consensus 164 --~~~~~~~~a 172 (753)
|+..++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 666666554
No 217
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=86.81 E-value=4.4 Score=39.90 Aligned_cols=100 Identities=10% Similarity=0.097 Sum_probs=54.1
Q ss_pred CcCChhHhhhcC-----CeEEEecCchHH----HHHHHhhCCC-CCceecCCCHH----HHHHHHhcCCCCCCeeEEEec
Q 037761 557 TFADLKKLRTES-----HFVGFQSGSFVE----DFLVKQLNFS-RNQTRPLSNFG----EYKEALSNGSRKGGVSAIFEE 622 (753)
Q Consensus 557 ~i~s~~dL~~~~-----~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~----~~~~~l~~g~~~~~~~a~~~~ 622 (753)
.|+|++||.+.. +.+|+..|...+ ..++ .+++. ..+.+. .+.. +...++.+|+ .+++...
T Consensus 109 ~i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l~-~yGL~~~~~~v~-~s~~~m~~~l~~A~~~g~----~~v~~~w 182 (280)
T 3tmg_A 109 PISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALN-YYGLSKEYELVP-SSESVMLASLDSSIKRNE----WILVPLW 182 (280)
T ss_dssp CCCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHHH-HTTCTTTSEEEC-CCHHHHHHHHHHHHHTTC----CCCEEEE
T ss_pred CCCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHHH-hcCCCCceEEEe-CCHHHHHHHHHHHHHCCC----CEEEEEe
Confidence 499999996322 246666665432 3333 56663 223332 2222 3357888888 8888877
Q ss_pred cccHHHHHhcCCCCcEEeCcc---c-ccCceEEEEcCC----CC-CchHhHHH
Q 037761 623 IPYIKVFLKKYSSKYTTAGPI---Y-RTDGLGFAFAKD----SP-LVSHFSQA 666 (753)
Q Consensus 623 ~~~~~~~~~~~~~~l~~~~~~---~-~~~~~~~~~~k~----s~-l~~~~n~~ 666 (753)
.+....- ++ +++++..+ + ..+....+++++ .| +.+.|++.
T Consensus 183 ~p~~~~~--~~--~l~~LeD~k~~~~p~~~~~~vvr~~~~~~~P~~~~~L~~l 231 (280)
T 3tmg_A 183 KPHWAFS--RY--DIKFLDDPDLIMGGIESVHTLVRLGLENDDFDAYYVFDHF 231 (280)
T ss_dssp ESCTHHH--HS--CEEECBCTTCTTCSSEEEEEEEETTHHHHCHHHHHHHHHC
T ss_pred cCchhhh--cC--CeEEecCccccCCCcceEEEEeccchhhHChHHHHHHHhC
Confidence 7765543 22 46666432 2 223445566655 45 55554443
No 218
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=86.56 E-value=3 Score=39.60 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCe
Q 037761 17 ILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWH 96 (753)
Q Consensus 17 ~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~ 96 (753)
+.++.|.. .++.+|+-+.++.... +..+-+..++|++.. ..+.++.+...+-+
T Consensus 64 ~~~~~L~~-~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~ 116 (226)
T 2zsk_A 64 NAAKALER-AGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVR 116 (226)
T ss_dssp HHHHHHHH-HTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCC
T ss_pred HHHHHHHH-cCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCC
Confidence 34444444 5899988877666543 556666778887763 24445544445678
Q ss_pred EEEEEEeeCCcccchHHHHHHHHHhCCeEEE
Q 037761 97 EVVLMYEDTNYGAGFISFLVDELQENDIRIS 127 (753)
Q Consensus 97 ~vail~~d~~~g~~~~~~~~~~~~~~g~~v~ 127 (753)
+|+++.+.... . ...+++.+++.|+++.
T Consensus 117 rigvlaT~~T~--~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 117 KVLLLGTKTTM--T-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp EEEEESSTTTT--S-CHHHHHHHHTTTCEEE
T ss_pred eEEEEeCHHHH--h-hhHHHHHHHHCCCEEE
Confidence 99999853322 2 2457778888888764
No 219
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=86.37 E-value=1.6 Score=42.77 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=39.4
Q ss_pred hhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEec-cccHH
Q 037761 561 LKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEE-IPYIK 627 (753)
Q Consensus 561 ~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~-~~~~~ 627 (753)
++|| +|++|++...+....++.+.. ....++... ...+...++.+|+ +|+.+.. .+.+.
T Consensus 91 ~~dL--kGk~Ia~~~~~~~~~~ll~~l-l~~~~~~~~-~~~~~~~al~~G~----vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQAL--EGLRVAVPGRHTTAYFLLSLY-AQGFVPVEV-RYDRILPMVAQGE----VEAGLIIHESRFT 150 (272)
T ss_dssp CSCC--TTCEEEESCTTSHHHHHHHHH-CSSCEEEEC-CGGGHHHHHHTTS----SSEEEECTTHHHH
T ss_pred hHHh--CCCEEEeCCCCchHHHHHHHH-hccCceeec-ChHHHHHHHHCCC----CCEEEEecchhhh
Confidence 6788 599999987666555544222 222244433 4558899999999 9999975 55554
No 220
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=86.37 E-value=17 Score=33.32 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAV 89 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~ 89 (753)
++-.+|+..++++ . +++++||.-..+ ..-+-+...+|+|... .+..+..+++.+.
T Consensus 36 ~~l~~~v~~a~~~-~-~~~dVIISRGgt-----a~~lr~~~~iPVV~I~------------------~s~~Dil~al~~a 90 (196)
T 2q5c_A 36 ASLTRASKIAFGL-Q-DEVDAIISRGAT-----SDYIKKSVSIPSISIK------------------VTRFDTMRAVYNA 90 (196)
T ss_dssp CCHHHHHHHHHHH-T-TTCSEEEEEHHH-----HHHHHTTCSSCEEEEC------------------CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-c-CCCeEEEECChH-----HHHHHHhCCCCEEEEc------------------CCHhHHHHHHHHH
Confidence 4467788888887 4 577888863332 2223344568887753 2344455565555
Q ss_pred HHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHH
Q 037761 90 LQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLF 169 (753)
Q Consensus 90 l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~ 169 (753)
-+ ++ ++++++...+... ..+.+.+.+ |.++.... +. +..|....+.++++.+.++|+-.+. ..
T Consensus 91 ~~-~~-~kIavvg~~~~~~--~~~~~~~ll---~~~i~~~~-~~---~~~e~~~~i~~l~~~G~~vvVG~~~------~~ 153 (196)
T 2q5c_A 91 KR-FG-NELALIAYKHSIV--DKHEIEAML---GVKIKEFL-FS---SEDEITTLISKVKTENIKIVVSGKT------VT 153 (196)
T ss_dssp GG-GC-SEEEEEEESSCSS--CHHHHHHHH---TCEEEEEE-EC---SGGGHHHHHHHHHHTTCCEEEECHH------HH
T ss_pred Hh-hC-CcEEEEeCcchhh--HHHHHHHHh---CCceEEEE-eC---CHHHHHHHHHHHHHCCCeEEECCHH------HH
Confidence 44 44 4999998755432 234454444 44444332 22 3568999999999999999776532 35
Q ss_pred HHHHHcCCC
Q 037761 170 ALVAKNGMM 178 (753)
Q Consensus 170 ~~a~~~g~~ 178 (753)
+.|++.|+.
T Consensus 154 ~~A~~~Gl~ 162 (196)
T 2q5c_A 154 DEAIKQGLY 162 (196)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHcCCc
Confidence 667888973
No 221
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=86.17 E-value=6.2 Score=40.64 Aligned_cols=99 Identities=8% Similarity=0.091 Sum_probs=68.8
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCccc-chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHH
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGA-GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKL 148 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l 148 (753)
|+-....+. ....+.++++.+| +++.||++...+.. +..+.+.+.+++.|+++.....+..+.+.......+..+
T Consensus 19 p~~i~~G~g---~~~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 94 (371)
T 1o2d_A 19 PTDVFFGEK---ILEKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY 94 (371)
T ss_dssp CCEEEESTT---HHHHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH
T ss_pred CceEEECcC---HHHHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 444444444 2233556677778 89988887645443 367889999999998765444455555677888888999
Q ss_pred hcCCccEEEEEeChH--HHHHHHHHH
Q 037761 149 STMQTRVFIVHMNTA--LASRLFALV 172 (753)
Q Consensus 149 ~~~~~~vIi~~~~~~--~~~~~~~~a 172 (753)
++.++|+|+-.|-+. |+..++...
T Consensus 95 ~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 95 RNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp TTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 988999999887654 666666554
No 222
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=85.94 E-value=12 Score=35.22 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHH
Q 037761 10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAV 89 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~ 89 (753)
++-.+|+..+++++.++++++||.-.++ ..-+-+...+|+|.... +..+..+++.+.
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIISRGgt-----a~~Lr~~~~iPVV~I~v------------------s~~Dil~aL~~a 102 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIAAGSN-----GAYLKSRLSVPVILIKP------------------SGYDVLQFLAKA 102 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEEEHHH-----HHHHHTTCSSCEEEECC------------------CHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEeCChH-----HHHHHhhCCCCEEEecC------------------CHHHHHHHHHHH
Confidence 4457788888888776568888864333 22233456788887532 233444555444
Q ss_pred HHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHH
Q 037761 90 LQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLF 169 (753)
Q Consensus 90 l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~ 169 (753)
- .++ ++++++...+.. ...+.+.+.+ |+++.... +. +..+....+.++++.+.++|+-.+ ...
T Consensus 103 ~-~~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~~-~~---~~ee~~~~i~~l~~~G~~vVVG~~------~~~ 165 (225)
T 2pju_A 103 G-KLT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQRS-YI---TEEDARGQINELKANGTEAVVGAG------LIT 165 (225)
T ss_dssp T-CTT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEEE-ES---SHHHHHHHHHHHHHTTCCEEEESH------HHH
T ss_pred H-hhC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEEE-eC---CHHHHHHHHHHHHHCCCCEEECCH------HHH
Confidence 3 344 589999876542 2234444444 33443322 22 366999999999999999877642 235
Q ss_pred HHHHHcCCC
Q 037761 170 ALVAKNGMM 178 (753)
Q Consensus 170 ~~a~~~g~~ 178 (753)
+.|++.|+.
T Consensus 166 ~~A~~~Gl~ 174 (225)
T 2pju_A 166 DLAEEAGMT 174 (225)
T ss_dssp HHHHHTTSE
T ss_pred HHHHHcCCc
Confidence 667888873
No 223
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=85.86 E-value=2.1 Score=40.76 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=69.1
Q ss_pred HHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCCeEE
Q 037761 19 AVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEV 98 (753)
Q Consensus 19 a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v 98 (753)
+..| .+.++++|+-+..+. .++..+-+..++|++... .+.++.....| ++|
T Consensus 68 ~~~l-~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~ri 118 (228)
T 2eq5_A 68 AKEF-EREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRV 118 (228)
T ss_dssp HHHH-HHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSE
T ss_pred HHHH-HHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeE
Confidence 4444 345888888766555 555556667788877742 22222222456 899
Q ss_pred EEEEeeCCcccchHHHHHHHH-HhCCeEEEEee-----ccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHH
Q 037761 99 VLMYEDTNYGAGFISFLVDEL-QENDIRISHMS-----KIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALV 172 (753)
Q Consensus 99 ail~~d~~~g~~~~~~~~~~~-~~~g~~v~~~~-----~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a 172 (753)
+|+....... ..+.+.+ ++.|..+.... .+........+...+.++.+.++|+|++.|..-.+..+..+.
T Consensus 119 gVlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i 194 (228)
T 2eq5_A 119 GVLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVL 194 (228)
T ss_dssp EEECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHH
T ss_pred EEEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHH
Confidence 9999754432 3567788 77777642211 111000123455566777667899999988764433344333
No 224
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=85.42 E-value=10 Score=37.38 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHh-cCCccceEEEecCCCCCCCCCChHHHHHHHHc-Cc-ccEEEeeee--eec-ccceeeecccccccc
Q 037761 413 EIFNATLEIVEEK-LGMKIHPQLVPYEDENGEMAGTYDELLYQIKL-KK-FDAVVGDIS--IVA-SRTDYVEFTLPYSES 486 (753)
Q Consensus 413 dll~~ia~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~Di~~~~~~--~t~-~r~~~~~fs~p~~~~ 486 (753)
+.++.+.+.++++ -|.++++.+. ....++..|.+ |. +|+.+..-. +.. .....++...||...
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~-----------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~ 85 (295)
T 3cij_A 17 EPMKAFKRAFEEKHPNVEVQTEAA-----------GSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKN 85 (295)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEE-----------CHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCceEEEEeC-----------cHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEee
Confidence 4555666655557 4865555333 45778899988 75 999875321 111 111223455678888
Q ss_pred ceEEEEecccC
Q 037761 487 GVTMLVPVKRD 497 (753)
Q Consensus 487 ~~~~~v~~~~~ 497 (753)
.+++++++...
T Consensus 86 ~lvl~~~~~~~ 96 (295)
T 3cij_A 86 QIVLAYRNDSR 96 (295)
T ss_dssp CEEEEECTTST
T ss_pred eEEEEEeCCCc
Confidence 99999987643
No 225
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=85.30 E-value=12 Score=36.75 Aligned_cols=100 Identities=14% Similarity=0.254 Sum_probs=57.4
Q ss_pred cCChhHhhhcC--CeEEEec------CchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHH
Q 037761 558 FADLKKLRTES--HFVGFQS------GSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVF 629 (753)
Q Consensus 558 i~s~~dL~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~ 629 (753)
|+|++||.+.. .++|+.. |.-.... .+.+++....+... +......++.+|+ .+++....+.-..
T Consensus 131 l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l-~~~YGl~~~~~~~~-~~g~~~~A~~~~~----~~v~~~wsp~~~~- 203 (284)
T 3r6u_A 131 LETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDF-TKTYGMTFGGTYPM-QIGLVYDAVKSGK----MDIVLAYSTDGRI- 203 (284)
T ss_dssp CCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHH-HHHHCCCCSEEEEC-CGGGHHHHHHHTS----CSEEEEETTCHHH-
T ss_pred CCCHHHHHhhhhceeeccCcccccCchhHHHHH-HHHcCCCccccccc-CHHHHHHHHHcCC----CeEEEEeCCCchh-
Confidence 89999998653 3677753 2323333 44667644444444 3335688999998 8888877766443
Q ss_pred HhcCCCCcEEeCc---ccccCceEEEEcCC----CC-CchHhHHHH
Q 037761 630 LKKYSSKYTTAGP---IYRTDGLGFAFAKD----SP-LVSHFSQAI 667 (753)
Q Consensus 630 ~~~~~~~l~~~~~---~~~~~~~~~~~~k~----s~-l~~~~n~~i 667 (753)
.++ +|+++.. .+..+..+..++++ .| +.+.|++.-
T Consensus 204 -~~~--dL~~LeD~k~~fp~~~v~~vvr~~~~~~~P~~~~~L~~l~ 246 (284)
T 3r6u_A 204 -KSY--GLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKML 246 (284)
T ss_dssp -HHT--TEEECBCTTCCSCCCBEEEEEEHHHHHHSTTHHHHHHTTT
T ss_pred -hcC--CceEcCCCcccCCccceeEEEcHHhhhHCHHHHHHHHHHH
Confidence 222 3555533 23334555666654 45 555554443
No 226
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=84.88 E-value=6.3 Score=39.57 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEecccc
Q 037761 556 PTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPY 625 (753)
Q Consensus 556 ~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~ 625 (753)
.+|+|++|| +|+++.+..+......++ ..+ .+.+.. ...|...+|..|. +|+.......
T Consensus 130 ~pI~s~~Dl--kG~KiR~~~~~~~~~~~~-~lG---a~pv~m-~~~Evy~ALq~G~----VDg~~~~~~~ 188 (316)
T 2vpn_A 130 EPITSPEDF--DNKKIRTMTNPLLAETYK-AFG---ATPTPL-PWGEVYGGLQTGI----IDGQENPIFW 188 (316)
T ss_dssp SCCCSGGGG--TTCEEEECSCHHHHHHHH-HHT---CEEEEC-CGGGHHHHHHHTS----CSEEEEEHHH
T ss_pred CCCCChHHh--CCCEEEeCCCHHHHHHHH-HcC---Ceeeec-CHHHHHHHHHcCC----cceeeCCHHH
Confidence 479999999 699998876666666776 343 344444 5678999999999 9998876443
No 227
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=84.33 E-value=22 Score=35.03 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHh-cCCccceEEEecCCCCCCCCCChHHHHHHHHc-Cc-ccEEEeeeee--ec-ccceeeecccccccc
Q 037761 413 EIFNATLEIVEEK-LGMKIHPQLVPYEDENGEMAGTYDELLYQIKL-KK-FDAVVGDISI--VA-SRTDYVEFTLPYSES 486 (753)
Q Consensus 413 dll~~ia~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~Di~~~~~~~--t~-~r~~~~~fs~p~~~~ 486 (753)
+.++.+.+.++++ -|.+++ +... ....++..|.+ |. +|+.+..-.. .. .....++...||...
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~--~~~~---------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~ 85 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQ--REAA---------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARN 85 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEE--EEEC---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCceEE--EEeC---------chHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEee
Confidence 4455555555547 575544 4432 56788899988 75 9998754211 11 112223445677888
Q ss_pred ceEEEEecccC
Q 037761 487 GVTMLVPVKRD 497 (753)
Q Consensus 487 ~~~~~v~~~~~ 497 (753)
.+++++++...
T Consensus 86 ~l~i~~~~~~~ 96 (296)
T 3cfx_A 86 QMILAYTNESK 96 (296)
T ss_dssp CEEEEECTTST
T ss_pred eEEEEEeCCCc
Confidence 89999987643
No 228
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=83.66 E-value=2.4 Score=39.30 Aligned_cols=148 Identities=8% Similarity=-0.014 Sum_probs=93.6
Q ss_pred hHHHHHHHHcCcccEEEeeeeeecccc--eeeec-cccccccceEEEEecccCCCCceeEEEecCccccceeeccccchh
Q 037761 448 YDELLYQIKLKKFDAVVGDISIVASRT--DYVEF-TLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSK 524 (753)
Q Consensus 448 ~~~~~~~l~~~~~Di~~~~~~~t~~r~--~~~~f-s~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R 524 (753)
-.++-..+..|.+|+++.+--.-.|.. ..... -..|....+++.+|....
T Consensus 51 ~~DIp~yV~~G~~DlGItG~D~l~E~~~~~v~el~dLgfG~crl~vAvp~~~~--------------------------- 103 (208)
T 1z7m_E 51 PNDVITFLEHGIVDIGFVGKDTLDENDFDDYYELLYLKIGQCIFALASYPDFS--------------------------- 103 (208)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHSSCCCEEEEEEETTCCCEEEEEECGGGG---------------------------
T ss_pred chhHHHHHhCCCccEEEeeeeeeeecCCCCeEEeeccccCCEEEEEEEECCCc---------------------------
Confidence 388999999999999998875433332 12221 223445556666665421
Q ss_pred hHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHH
Q 037761 525 FVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYK 604 (753)
Q Consensus 525 ~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (753)
+ ++++ .+++++.........||.+ .+. +.++......-|.-
T Consensus 104 ---------------------------------~--~~~~--~~~RIATkyp~l~~~yf~~-~gi-~~~ii~l~GsvE~a 144 (208)
T 1z7m_E 104 ---------------------------------N--KNFQ--RHKRIASKYPRVTKKYFAQ-KQE-DIEIIKLEGSVELG 144 (208)
T ss_dssp ---------------------------------G--CCCS--SCEEEEESCHHHHHHHHHH-TTC-CEEEEECSSCTTHH
T ss_pred ---------------------------------c--chhc--CCCEEEECchHHHHHHHHH-cCC-ceEEEECCCceeec
Confidence 2 4555 5889999888889999984 343 35555555444443
Q ss_pred HHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCC-C-chHhHHHHHHhh
Q 037761 605 EALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSP-L-VSHFSQAILLVR 671 (753)
Q Consensus 605 ~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~-l-~~~~n~~i~~l~ 671 (753)
..-|- .|++++-..+...+-++ +|.++. .+......++.+|.+. . .+.++..+.+|+
T Consensus 145 --p~~Gl----AD~IvDivsTG~TLr~N---gL~~ie-~I~~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 203 (208)
T 1z7m_E 145 --PVVGL----ADAIVDIVETGNTLSAN---GLEVIE-KISDISTRMIVNKSSFKFKKDKIIEMVERLE 203 (208)
T ss_dssp --HHTTS----CSEEEEEESSSHHHHTT---TCEEEE-EEEECCEEEEEEHHHHHHHHHHHHHHHHHHC
T ss_pred --cCCCc----ccEEEEEeCChHHHHHC---CCEEeE-EEEeeEEEEEEcchHhHHHHHHHHHHHHHHH
Confidence 34466 89999888887776665 677774 4455566677777652 2 235565665554
No 229
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=83.39 E-value=3.3 Score=40.45 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH-HHHH
Q 037761 14 GKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA-VLQN 92 (753)
Q Consensus 14 ~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~-~l~~ 92 (753)
...+.++.|.. .++.+|+-+.++..+.++..+-+..++|+|... ...++ .+..
T Consensus 53 ~~~~~~~~L~~-~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~-------------------------ep~~~~A~~~ 106 (267)
T 2gzm_A 53 FTWEMTEHLLD-LNIKMLVIACNTATAVVLEEMQKQLPIPVVGVI-------------------------HPGSRTALKV 106 (267)
T ss_dssp HHHHHHHHHHT-TTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCEEEEeCchhhHHHHHHHHHhCCCCEEeec-------------------------HHHHHHHHHc
Confidence 34455555554 599999987777665677778888899999841 12222 2233
Q ss_pred cCCeEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEeec------cCCCC-----chhhHHHHHHHHhcCCccEEEEE
Q 037761 93 FSWHEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHMSK------IPTSA-----EDFQISKELSKLSTMQTRVFIVH 159 (753)
Q Consensus 93 ~~w~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~-----~~~d~~~~l~~l~~~~~~vIi~~ 159 (753)
.+-++|+|+.+... -....+++.+++. |+++..... +..+. ....+...+..+.+.++|+|++.
T Consensus 107 ~~~~rIgVlaT~~T---~~~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLG 183 (267)
T 2gzm_A 107 TNTYHVGIIGTIGT---VKSGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILG 183 (267)
T ss_dssp CSSCEEEEEECHHH---HHHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred cCCCEEEEEEChHH---hccHHHHHHHHHhCCCCEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 45678888875322 1222355555554 666543211 00010 11334455566666778888887
Q ss_pred eC
Q 037761 160 MN 161 (753)
Q Consensus 160 ~~ 161 (753)
|.
T Consensus 184 CT 185 (267)
T 2gzm_A 184 CT 185 (267)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 230
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=83.06 E-value=1.7 Score=45.19 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=49.8
Q ss_pred CcCChhHhhhcCCeEEEecCchHHHHHHHhh----C-CCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHH
Q 037761 557 TFADLKKLRTESHFVGFQSGSFVEDFLVKQL----N-FSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFL 630 (753)
Q Consensus 557 ~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~ 630 (753)
.|++++||. | +|++.++..+.+..... . -...++..+++..+++.+|.+|+ +||++.+..+...+-
T Consensus 27 ~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~~~~~~~y~~~~~a~~aL~nG~----vDAiv~~~~~~~~le 97 (398)
T 2xxp_A 27 EIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGE----TKAIVLNSVFENIIE 97 (398)
T ss_dssp SCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCCCCEEEECSSHHHHHHHHHTTS----CSCEEEEHHHHHHHH
T ss_pred CcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCCcceEEecCCHHHHHHHHHcCC----CCEEEEchHHHHHHH
Confidence 399999994 5 99998888776554211 0 11256889999999999999999 999998876555443
No 231
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=83.04 E-value=2.1 Score=44.47 Aligned_cols=82 Identities=7% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA- 163 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~- 163 (753)
.+.++++.+| +|+.||++...+.. ..+.+.+.+++ |+.+.+ ..+..+.+.......+..+++.++|+||-.|-+.
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 118 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKT 118 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 3566778888 99988886665543 67788888998 988744 3455455667888888888888999999998765
Q ss_pred -HHHHHHH
Q 037761 164 -LASRLFA 170 (753)
Q Consensus 164 -~~~~~~~ 170 (753)
|+..++.
T Consensus 119 ~D~AK~iA 126 (387)
T 3uhj_A 119 ADTAKIVA 126 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 5555554
No 232
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=82.73 E-value=2.7 Score=39.93 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEe
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVG 465 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~ 465 (753)
.++++.+++.++++.|++++++... ++.....+|.+|++|+...
T Consensus 15 ~~i~~~~~~~l~~~~Gi~veiv~F~----------Dy~~pN~AL~~G~iDaN~f 58 (240)
T 3tqw_A 15 TQLMEVAKQVALNRYGLHVNIITFS----------DYNTPNEALADGSVDANMF 58 (240)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEES----------CTTSHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeC----------ChHhHHHHHHcCCcCeecc
Confidence 5677777776766788655554443 6788899999999998753
No 233
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=82.72 E-value=1.4 Score=40.86 Aligned_cols=177 Identities=10% Similarity=0.018 Sum_probs=94.7
Q ss_pred eehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccceE
Q 037761 410 FCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVT 489 (753)
Q Consensus 410 ~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~ 489 (753)
+..+++..+.+ +.- ++++.+... + .+.+|.+|++|+++....... ..+. +.+++...++
T Consensus 21 ~l~~~l~~f~~----~~P-~v~l~i~~~-----------~-~~~~l~~g~~D~~i~~~~~~~---~~~~-~~~l~~~~~~ 79 (213)
T 3hhf_B 21 LLAPLAAKFNE----RYP-HIRLSLVSS-----------E-GYINLIERKVDIALRAGELDD---SGLR-ARHLFDSRFR 79 (213)
T ss_dssp THHHHHHHHHH----HCT-TEEEEEECC-----------S-TTHHHHTTSSSEEEECC--CC---SSEE-EEEEEEECEE
T ss_pred HHHHHHHHHHH----HCC-CcEEEEEeC-----------C-cHHHHHhCCccEEEEEecCCC---ccce-EEeeecceEE
Confidence 45667777766 654 355555532 1 234589999999985433222 2222 4677888899
Q ss_pred EEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCC
Q 037761 490 MLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESH 569 (753)
Q Consensus 490 ~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~ 569 (753)
+++++..... ....-+++||. +.
T Consensus 80 ~v~~~~~~~~-------------------------------------------------------~~~~~~~~~L~--~~ 102 (213)
T 3hhf_B 80 VIASPEYLAK-------------------------------------------------------HGTPQSTEELA--GH 102 (213)
T ss_dssp EEECHHHHHH-------------------------------------------------------HCCCSSGGGGG--GS
T ss_pred EEeCHHHHHh-------------------------------------------------------cCCCCCHHHhc--CC
Confidence 9998764311 11245788885 43
Q ss_pred eEE-EecCchHHHHHHH---hhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEe-Cccc
Q 037761 570 FVG-FQSGSFVEDFLVK---QLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTA-GPIY 644 (753)
Q Consensus 570 ~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~-~~~~ 644 (753)
++. ...+.....++.. ..+.........++.......+..|. .-+++.. .......... .+..+ ....
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~-~~~~~~~~~~--~l~~~~~~~~ 175 (213)
T 3hhf_B 103 QCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC----GIVCLSD-FLVDNDIAEG--KLIPLLAEQT 175 (213)
T ss_dssp CBCEESSCGGGGEEEEECTTSCEEECCCSSEESSHHHHHHHHHTTS----CBEEEEH-HHHHHHHHHT--SSEEECTTTB
T ss_pred CeEEecCCCCccchhhhhCCCccccccCceeeCCHHHHHHHHHcCC----cEEEeeH-HHhhHHHhcC--CcEEecCCCC
Confidence 333 3333322222211 00111122344678888899999997 5555544 3333333332 34333 3322
Q ss_pred c--cCceEEEEcCCCCCchHhHHHHHHhh
Q 037761 645 R--TDGLGFAFAKDSPLVSHFSQAILLVR 671 (753)
Q Consensus 645 ~--~~~~~~~~~k~s~l~~~~n~~i~~l~ 671 (753)
. ...++++.+++.+........+..+.
T Consensus 176 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 204 (213)
T 3hhf_B 176 SDKTHPFNAVYYSDKAVNLRLRVFLDFLV 204 (213)
T ss_dssp CCCCEEEEEEEEGGGGGCHHHHHHHHHHH
T ss_pred CCceeeEEEEEcCCCCCChHHHHHHHHHH
Confidence 2 34677788887665555555554443
No 234
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=82.29 E-value=13 Score=36.64 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHh-cCCccceEEEecCCCCCCCCCChHHHHHHHHc-Cc-ccEEEeeeeeeccc---ceeeecccccccc
Q 037761 413 EIFNATLEIVEEK-LGMKIHPQLVPYEDENGEMAGTYDELLYQIKL-KK-FDAVVGDISIVASR---TDYVEFTLPYSES 486 (753)
Q Consensus 413 dll~~ia~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~Di~~~~~~~t~~r---~~~~~fs~p~~~~ 486 (753)
+.++.+.+.++++ .|.++++.+. ....++..|.+ |. +|+.+..-....++ ...++...||...
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~-----------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~ 85 (292)
T 3cfz_A 17 VPFEEYEKMFEKEHPNVDVEREPA-----------GSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARN 85 (292)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE-----------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCceEEEEeC-----------CHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEec
Confidence 4455555555547 5755544333 56788999988 75 99987542111111 1223445677888
Q ss_pred ceEEEEecccC
Q 037761 487 GVTMLVPVKRD 497 (753)
Q Consensus 487 ~~~~~v~~~~~ 497 (753)
.+++++++...
T Consensus 86 ~lvi~~~~~~~ 96 (292)
T 3cfz_A 86 EIVLAYTDKSK 96 (292)
T ss_dssp CEEEEECTTST
T ss_pred cEEEEEcCCCc
Confidence 89999987643
No 235
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=81.79 E-value=2.3 Score=40.26 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEe
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVG 465 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~ 465 (753)
.++++.+.+.++++.|.++++ +.. .+|.....+|.+|++|+...
T Consensus 18 ~~il~~~~~~l~~k~Gi~vei--v~F--------~Dy~~pN~AL~~G~IDaN~f 61 (237)
T 3k2d_A 18 AQVAEVAAKVAKEKYGLDVEL--VTF--------TDYVTPNAALDDGSIDMNAF 61 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCEEE--EEE--------SCTTSHHHHHHHTSCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEE--EEe--------CChHhHHHHHHcCCCCeecc
Confidence 466777777666678865555 443 26888999999999998753
No 236
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=81.12 E-value=6.2 Score=38.91 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEee
Q 037761 13 CGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISF 57 (753)
Q Consensus 13 ~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~ 57 (753)
..+...+..++++.++.+|+-+..+..+.++..+-+..++|+|..
T Consensus 70 ~~~~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 70 ERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 445555666676679999998777766667777878889999984
No 237
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=80.31 E-value=6.9 Score=38.59 Aligned_cols=164 Identities=10% Similarity=-0.079 Sum_probs=90.5
Q ss_pred ccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccceEEEEecccCCCCceeEEEec
Q 037761 429 KIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKP 508 (753)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~P 508 (753)
++++.+... +...+++.|.+|++|+++..-.... ..+. +.+.....+++++++.....
T Consensus 119 ~v~i~~~~~---------~~~~~~~~l~~g~~D~~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~~~~~--------- 176 (303)
T 3isp_A 119 DVLLDVRIE---------DQDHSARLLREGVAMGAVTTERNPV---PGCR-VHPLGEMRYLPVASRPFVQR--------- 176 (303)
T ss_dssp SEEEEEEEC---------CHHHHHHHHHTTSCSEEEESCCSCC---TTEE-EEEEEEEEEEEEECHHHHHH---------
T ss_pred cceEEEEec---------ChHHHHHHHHcCcceEEEecCCCCC---CCeE-EEEccceeEEEEecchHhhh---------
Confidence 355656553 6788999999999999875432221 1222 45677788888888764211
Q ss_pred CccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEE-ecCchH-HHHHHH-
Q 037761 509 WTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGF-QSGSFV-EDFLVK- 585 (753)
Q Consensus 509 F~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~-~~~~~~-~~~~~~- 585 (753)
.....-+++||. +.++.. ..+... ..+...
T Consensus 177 ---------------------------------------------~~~~~~~~~dL~--~~~~i~~~~~~~~~~~~~~~~ 209 (303)
T 3isp_A 177 ---------------------------------------------HLSDGFTAAAAA--KAPSLAWNRDDGLQDMLVRKA 209 (303)
T ss_dssp ---------------------------------------------HCTTCSCTTTTT--TSCBCCSSTTCCHHHHHHHHH
T ss_pred ---------------------------------------------ccccCCCHhHhc--cCCceecCCCCcHHHHHHHHH
Confidence 000124788885 443332 223332 333332
Q ss_pred -hhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhH
Q 037761 586 -QLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFS 664 (753)
Q Consensus 586 -~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n 664 (753)
..+... .....++.......+..|. .-+++.. .......... .+..+.+.. ..++++.+++.+......
T Consensus 210 ~~~~~~~-~~~~~~~~~~~~~~v~~g~----Gi~~lp~-~~~~~~~~~~--~l~~l~~~~--~~~~l~~~~~~~~~~~~~ 279 (303)
T 3isp_A 210 FRRAITR-PTHFVPTTEGFTAAARAGL----GWGMFPE-KLAASPLADG--SFVRVCDIH--LDVPLYWQCWKLDSPIIA 279 (303)
T ss_dssp HSSCCCC-CBCCCCSHHHHHHHHHTTS----CBEEEEH-HHHHHHHHHS--SCEESSSCC--EEEEEEEEEESSCCHHHH
T ss_pred hhcccCC-ceEEECCHHHHHHHHHhCC----eEEeccH-HHHhhhhcCC--CeEEecCCC--CccceEEecCCCCChHHH
Confidence 112332 4456678888899999997 5555544 3333333332 344444433 566677777655555555
Q ss_pred HHHHHhh
Q 037761 665 QAILLVR 671 (753)
Q Consensus 665 ~~i~~l~ 671 (753)
..+..++
T Consensus 280 ~f~~~l~ 286 (303)
T 3isp_A 280 RITDTVR 286 (303)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 238
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=80.09 E-value=12 Score=38.21 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=65.2
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS 149 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 149 (753)
|+-+...+.... .+.++++.+|.+++.||++...+. ...+.+.+.+++.|+++......+ +.+....... ..++
T Consensus 12 p~~i~~G~g~~~---~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKIY---NIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-NIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCGG---GHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-CCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHHH---HHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-CCCHHHHHHH-HHhh
Confidence 555555655332 356677778888998888655443 567888899999998775443233 3355667777 7788
Q ss_pred cCCccEEEEEeChH--HHHHHHH
Q 037761 150 TMQTRVFIVHMNTA--LASRLFA 170 (753)
Q Consensus 150 ~~~~~vIi~~~~~~--~~~~~~~ 170 (753)
+.++|+|+-.|-+. |+..++.
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA 108 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMA 108 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHH
T ss_pred hcCCCEEEEECChHHHHHHHHHH
Confidence 88999999887654 6666665
No 239
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=79.93 E-value=1.6 Score=42.63 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEee
Q 037761 11 KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISF 57 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~ 57 (753)
+|...+..+.+.+.+.++.+|+-+..+... ++..+-+...+|+|..
T Consensus 83 ~~~~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 83 SPYRYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 344455555555556699999987777655 6677777889999974
No 240
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=79.31 E-value=8.3 Score=37.75 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH-HHHHH
Q 037761 14 GKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS-AVLQN 92 (753)
Q Consensus 14 ~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~-~~l~~ 92 (753)
...+.+..|.+ .++.+|+-+-.+..+.++..+-+.+++|+|... ...+ ..+..
T Consensus 57 ~~~~~~~~L~~-~g~d~IViACNTas~~~l~~lr~~~~iPVigii-------------------------ep~~~~A~~~ 110 (276)
T 2dwu_A 57 FVFEMVEFLKQ-FPLKALVVACNTAAAATLAALQEALSIPVIGVI-------------------------HPGARAAIKV 110 (276)
T ss_dssp HHHHHHHHHTT-SCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc-------------------------HHHHHHHHHh
Confidence 44555555554 599999987767666677777788899988631 1112 22233
Q ss_pred cCCeEEEEEEeeCCcccchHHHHHHHHHh--CCeEEEEeeccCC-------C-C----chhhHHHHHHHHhcCCccEEEE
Q 037761 93 FSWHEVVLMYEDTNYGAGFISFLVDELQE--NDIRISHMSKIPT-------S-A----EDFQISKELSKLSTMQTRVFIV 158 (753)
Q Consensus 93 ~~w~~vail~~d~~~g~~~~~~~~~~~~~--~g~~v~~~~~~~~-------~-~----~~~d~~~~l~~l~~~~~~vIi~ 158 (753)
.+-++|+|+.+....-.. .+++.+++ .+.++.... .+. + . ....+...+..+++.++|+|++
T Consensus 111 ~~~~rIgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~~-~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVL 186 (276)
T 2dwu_A 111 TKKGKIGVIGTVGTIQSN---MYEKALHELDTYLKVHSHA-CPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLIL 186 (276)
T ss_dssp CSSSEEEEEECHHHHHTT---HHHHHHHHHCTTCEEEEEE-CTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEE
T ss_pred cCCCeEEEEeChhhhhhH---HHHHHHHHhCCCCEEEeee-CHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 456789998865432221 23333333 245553221 111 0 0 1124555667777778999988
Q ss_pred EeC-hHHHHHHH
Q 037761 159 HMN-TALASRLF 169 (753)
Q Consensus 159 ~~~-~~~~~~~~ 169 (753)
.|. .+.....+
T Consensus 187 GCTh~p~l~~~i 198 (276)
T 2dwu_A 187 GCTHYPLLESYI 198 (276)
T ss_dssp CSTTGGGGHHHH
T ss_pred CCCCHHHHHHHH
Confidence 765 33333333
No 241
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=79.24 E-value=1.6 Score=41.70 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=50.6
Q ss_pred eeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccc---eeeecccccc
Q 037761 408 TGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRT---DYVEFTLPYS 484 (753)
Q Consensus 408 ~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~---~~~~fs~p~~ 484 (753)
.|+..+|+..+.+ +.|.++++.+. ....++.++.+|.+|+.+..-....+.. ....-..++.
T Consensus 18 ~~ll~~L~~~Fek----~~gv~V~~~~~-----------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~ 82 (236)
T 3lr1_A 18 SGLLKVLLPPFEK----KNNVKVDVIAV-----------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVM 82 (236)
T ss_dssp HCHHHHHHHHHHH----HHTCEEEEEEE-----------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEE
T ss_pred hHHHHHHHHHHHH----HhCCeEEEEEc-----------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEE
Confidence 3555666666666 87765555444 5678999999999999976544332221 1111245788
Q ss_pred ccceEEEEecccCC
Q 037761 485 ESGVTMLVPVKRDN 498 (753)
Q Consensus 485 ~~~~~~~v~~~~~~ 498 (753)
.+.+++++|+.++.
T Consensus 83 ~n~lVlV~P~~~P~ 96 (236)
T 3lr1_A 83 YNDFVIVGPKNDPA 96 (236)
T ss_dssp ECCEEEEECTTCTT
T ss_pred cCcEEEEEECCChh
Confidence 99999999988764
No 242
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=79.04 E-value=9.7 Score=39.14 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=65.1
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS 149 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 149 (753)
|+-+...+..-. .+.++++.+| +++.||++...+. ...+.+.+.+++.|+++.. ..+....+.......+..++
T Consensus 10 p~~i~~G~g~~~---~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~ 83 (370)
T 1jq5_A 10 PAKYVQGKNVIT---KIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIAR 83 (370)
T ss_dssp CSEEEEETTGGG---GHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHH
T ss_pred CCeEEECcCHHH---HHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHH
Confidence 454555555322 3556777778 8998888655443 5678889999999988753 33443334457777788888
Q ss_pred cCCccEEEEEeChH--HHHHHHH
Q 037761 150 TMQTRVFIVHMNTA--LASRLFA 170 (753)
Q Consensus 150 ~~~~~vIi~~~~~~--~~~~~~~ 170 (753)
+.++|+|+-.|-+. |+..++.
T Consensus 84 ~~~~d~IIavGGGsv~D~aK~iA 106 (370)
T 1jq5_A 84 KAEAAIVIGVGGGKTLDTAKAVA 106 (370)
T ss_dssp HTTCSEEEEEESHHHHHHHHHHH
T ss_pred hcCCCEEEEeCChHHHHHHHHHH
Confidence 88999999887654 6666665
No 243
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=78.76 E-value=4 Score=37.95 Aligned_cols=146 Identities=8% Similarity=-0.022 Sum_probs=92.2
Q ss_pred HHHHHHHHcCcccEEEeeeeeecccceeeeccc--cccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhH
Q 037761 449 DELLYQIKLKKFDAVVGDISIVASRTDYVEFTL--PYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFV 526 (753)
Q Consensus 449 ~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~--p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~ 526 (753)
.++-..+..|.+|+++.+--.-.+....+.--. .|....+++.+|....
T Consensus 48 ~DIp~yV~~G~aDlGItG~D~l~E~~~~v~elldLgfG~crl~vAvp~~~~----------------------------- 98 (219)
T 1o63_A 48 FDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRG----------------------------- 98 (219)
T ss_dssp GGHHHHHHTTSCSEEEEEHHHHHHSCCCCBCCSEEEEEEEEEEEEEETTTC-----------------------------
T ss_pred hhHHHHHhCCCccEEEeeeEeeeecCCCeeEEeccccccEEEEEEEECCCc-----------------------------
Confidence 788999999999999988754333322222112 3444555666654421
Q ss_pred HHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHH
Q 037761 527 LVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEA 606 (753)
Q Consensus 527 ~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (753)
+ +++ +++|+.........||.+ .+. +.++......-|.-
T Consensus 99 -------------------------------~---~~~---~~RIATkyp~l~r~yf~~-~Gi-~~~Ii~l~GsvE~a-- 137 (219)
T 1o63_A 99 -------------------------------I---PEG---EKRIATKFPNVTQRYCES-KGW-HCRIIPLKGSVELA-- 137 (219)
T ss_dssp -------------------------------C---CSS---CEEEEESCHHHHHHHHHH-HTC-CEEEEECSSCTTHH--
T ss_pred -------------------------------c---ccC---CcEEEECcHHHHHHHHHH-CCC-ceEEEECCCceeec--
Confidence 2 444 778999888888999984 444 34565555444443
Q ss_pred HhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCC--CchHhHHHHHHhhh
Q 037761 607 LSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSP--LVSHFSQAILLVRE 672 (753)
Q Consensus 607 l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~--l~~~~n~~i~~l~~ 672 (753)
..-|- .|++++-..+...+-++ +|.++. .+......++.+|.+. -.+.++..+.+|+.
T Consensus 138 P~~Gl----ADaIvDivsTG~TLraN---gL~~ie-~I~~SsA~LI~n~~s~~~k~~~i~~l~~rl~~ 197 (219)
T 1o63_A 138 PIAGL----SDLIVDITETGRTLKEN---NLEILD-EIFVIRTHVVVNPVSYRTKREEVVSFLEKLQE 197 (219)
T ss_dssp HHHTS----CSEEEEEESSSHHHHHT---TEEEEE-EEEEEEEEEEECHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCCC----cceeEEeeccHHHHHHC---CCEEee-EEeeeEEEEEECchhhHHHHHHHHHHHHHHHH
Confidence 23365 89999888887776666 677774 4445566677777652 23567777777653
No 244
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=78.60 E-value=4.3 Score=39.59 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHc
Q 037761 14 GKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNF 93 (753)
Q Consensus 14 ~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~ 93 (753)
.+.+.+..|.+ .++.+++=+..+..+.++..+-+.+.+|+|... -.++...++.-
T Consensus 55 ~~~~~~~~L~~-~g~~~IVIACNTa~~~al~~lr~~~~iPvigii------------------------~pa~~~A~~~~ 109 (269)
T 3ist_A 55 FTWEMTNFLVD-RGIKMLVIACNTATAAALYDIREKLDIPVIGVI------------------------QPGSRAALKAT 109 (269)
T ss_dssp HHHHHHHHHHH-TTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHH-CCCCEEEEeCCCccHHHHHHHHHhcCCCEEeec------------------------HHHHHHHHHHc
Confidence 34455555655 599999987777666677778888899999631 11222233444
Q ss_pred CCeEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEeec------cCCCC-----chhhHHHHHHHHhcCCccEEEEEe
Q 037761 94 SWHEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHMSK------IPTSA-----EDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 94 ~w~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~-----~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
+-++|+|+.+.... ....+++.+++. +..+..... +..+. ....+...+..+++.++|.|++.|
T Consensus 110 ~~~~IGVLaT~~Ti---~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGC 186 (269)
T 3ist_A 110 RNNKIGVLGTLGTV---ESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGC 186 (269)
T ss_dssp SSSEEEEEECHHHH---HHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECS
T ss_pred CCCeEEEEeccchh---hHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 56788888865321 223444444443 334332100 00110 122344556667777889988876
Q ss_pred Ch
Q 037761 161 NT 162 (753)
Q Consensus 161 ~~ 162 (753)
..
T Consensus 187 Th 188 (269)
T 3ist_A 187 TH 188 (269)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 245
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=78.47 E-value=40 Score=33.64 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcc--cccCceEEEEcCCCCCchHhHHHHHHhhhcc
Q 037761 597 LSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPI--YRTDGLGFAFAKDSPLVSHFSQAILLVRENQ 674 (753)
Q Consensus 597 ~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G 674 (753)
..+..+....+.+|+ ++..+........+.+... ++.+.-+. ......+++++++++-.+.--+.|..|....
T Consensus 216 ~~~~~~~~~~f~~G~----~a~~~~~~~~~~~~~~~~~-~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e 290 (351)
T 4edp_A 216 YSKSSDLANMFSNGE----IVAAVASDFAFGTISKAKP-EVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKE 290 (351)
T ss_dssp ECCHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCT-TCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHH
T ss_pred cCChHHHHHHHHcCC----EEEEecCcHHHHHHHhcCC-CeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHH
Confidence 456778889999999 8888876655555544432 44443221 1122357889999998888888888888776
Q ss_pred hHHHHHHHh
Q 037761 675 TRMDRIEKK 683 (753)
Q Consensus 675 ~~~~~~~~~ 683 (753)
....+.+.
T Consensus 291 -~q~~~~~~ 298 (351)
T 4edp_A 291 -VQEKTAKA 298 (351)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHh
Confidence 45555544
No 246
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=78.41 E-value=2.7 Score=40.06 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCC
Q 037761 16 LILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSW 95 (753)
Q Consensus 16 ~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w 95 (753)
.+.++.|.. .++.+++-+.++... .+..+-+..++|+|.. .++.++.+...+-
T Consensus 66 ~~~~~~L~~-~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~ 118 (231)
T 3ojc_A 66 SNAAISLKH-AGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGI 118 (231)
T ss_dssp HHHHHHHHH-HTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTC
T ss_pred HHHHHHHHh-cCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCC
Confidence 444445544 599999987666544 3355666778888763 2444554444577
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhC-CeEEE
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQEN-DIRIS 127 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~-g~~v~ 127 (753)
++|+++.+....- ...+++.+++. |+++.
T Consensus 119 ~rVgvLaT~~T~~---s~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 119 DKIGLLGTRYTME---QGFYRGRLTEKHGIEVI 148 (231)
T ss_dssp CEEEEESCHHHHH---STTTHHHHHHTTCCEEE
T ss_pred CEEEEEcCHHHhh---chHHHHHHHhcCCCEEE
Confidence 8999998653221 12344555555 87764
No 247
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=77.78 E-value=5.1 Score=39.24 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHHcCC
Q 037761 16 LILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSW 95 (753)
Q Consensus 16 ~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w 95 (753)
.+.++.|. +.++.+|+-+.++..+.++..+-+..++|+|... -.++...+...+-
T Consensus 64 ~~~~~~L~-~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~------------------------epa~~~A~~~~~~ 118 (273)
T 2oho_A 64 WELVNFLL-TQNVKMIVFACNTATAVAWEEVKAALDIPVLGVV------------------------LPGASAAIKSTTK 118 (273)
T ss_dssp HHHHHHHH-TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSS
T ss_pred HHHHHHHH-HCCCCEEEEeCchHhHHHHHHHHHhCCCCEEecc------------------------HHHHHHHHHhcCC
Confidence 33444444 5699999987777666667777788899988841 0112222333466
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEeec------cCCCC-c----hhhHHHHHHHHhcCCccEEEEEeC
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHMSK------IPTSA-E----DFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~-~----~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
++|+|+.+... -....+++.+++. |+++..... +..+. + ...+...+..+.+. +|+|++.|.
T Consensus 119 ~rIgVlaT~~T---~~~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCT 193 (273)
T 2oho_A 119 GQVGVIGTPMT---VASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCT 193 (273)
T ss_dssp SEEEEEECHHH---HHHTHHHHHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECST
T ss_pred CeEEEEECchh---hcchHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCC
Confidence 78888886432 1223345555554 666653211 11110 0 12233344445445 888888665
No 248
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=77.59 E-value=31 Score=35.84 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=62.4
Q ss_pred eEEEEEEeeCCcc--cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh------HHHHH
Q 037761 96 HEVVLMYEDTNYG--AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT------ALASR 167 (753)
Q Consensus 96 ~~vail~~d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~------~~~~~ 167 (753)
++|.|+| ++.|| +.+++.+.+.+.+.|++++....... ..++...++..+. +++.|++.++. +.+..
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~--~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~~ 340 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDE--ERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMRF 340 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSS--CCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccC--CCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHHH
Confidence 4788888 56666 45689999999999998775544432 2446777777764 46778877653 35666
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccc
Q 037761 168 LFALVAKNGMMSKGYTWIVTACLSN 192 (753)
Q Consensus 168 ~~~~a~~~g~~~~~~~wi~~~~~~~ 192 (753)
++..+.......+.-..+++-+|+.
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHhcccCCCEEEEEECCCCCc
Confidence 7777777666544445666667764
No 249
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=77.57 E-value=9.1 Score=34.38 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=49.8
Q ss_pred CeEEEEEEeeCCccc---chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC-CccEEEEEeC
Q 037761 95 WHEVVLMYEDTNYGA---GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM-QTRVFIVHMN 161 (753)
Q Consensus 95 w~~vail~~d~~~g~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIi~~~~ 161 (753)
--+++||...|+-|+ .....+...+++.|.++.....++++ ..++...+.+..+. ++|+|+..+-
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 358999998777663 34567889999999999888777754 56788888877654 6899998864
No 250
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=77.48 E-value=8.2 Score=38.01 Aligned_cols=120 Identities=10% Similarity=0.146 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH-HHHHH
Q 037761 14 GKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS-AVLQN 92 (753)
Q Consensus 14 ~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~-~~l~~ 92 (753)
...+.++.|.+ .++.+|+-+..+..+.++..+-+..++|+|... ++.+ ..+..
T Consensus 72 ~~~~~~~~L~~-~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~-------------------------e~a~~~A~~~ 125 (286)
T 2jfq_A 72 YTVEIARKLME-FDIKMLVIACNTATAVALEYLQKTLSISVIGVI-------------------------EPGARTAIMT 125 (286)
T ss_dssp HHHHHHHHHTT-SCCSEEEECCHHHHHHHHHHHHHHCSSEEEESH-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCEEEEeCCchhHHHHHHHHHhCCCCEEecc-------------------------HHHHHHHHHh
Confidence 34445555554 599999987777665567777778899999842 1112 22233
Q ss_pred cCCeEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEeec------cCCCC-c-----hhhHHHHHHHHhcCCccEEEE
Q 037761 93 FSWHEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHMSK------IPTSA-E-----DFQISKELSKLSTMQTRVFIV 158 (753)
Q Consensus 93 ~~w~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~-~-----~~d~~~~l~~l~~~~~~vIi~ 158 (753)
.+-++|+||.+.... ....+++.+++. +.++..... +..+. + ...+...+..+++.++|+|++
T Consensus 126 ~~~~rIgVLaT~~T~---~~~~y~~~l~~~~~~~~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVL 202 (286)
T 2jfq_A 126 TRNQNVLVLGTEGTI---KSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVIL 202 (286)
T ss_dssp CSSSEEEEEECHHHH---HHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEE
T ss_pred cCCCEEEEEeChHHh---cchHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEE
Confidence 456788888754321 122344444443 455432111 00111 1 122444555666678899998
Q ss_pred EeCh
Q 037761 159 HMNT 162 (753)
Q Consensus 159 ~~~~ 162 (753)
.|..
T Consensus 203 GCTh 206 (286)
T 2jfq_A 203 GCTH 206 (286)
T ss_dssp ESSS
T ss_pred cCcC
Confidence 7753
No 251
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=77.43 E-value=29 Score=31.23 Aligned_cols=178 Identities=7% Similarity=-0.103 Sum_probs=94.5
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.+ +++.+... +..++++.|.+|..|+++..-.... ..+. +.+.....+
T Consensus 15 ~~l~~~l~~f~~----~~~--v~l~l~~~---------~~~~~~~~l~~g~d~~~i~~~~~~~---~~l~-~~~l~~~~~ 75 (208)
T 3fd3_A 15 TWFLDAVSKFTG----GSD--YLVNIAVD---------DQDHTVEWLRGGRVLAAVTAHDKPV---QGCR-VTPLGVLRY 75 (208)
T ss_dssp TTHHHHHHHHHH----TSS--CEEEEEEC---------CSSCHHHHHHTTSCSEEEESCCSCC---TTCE-EEEEEEEEE
T ss_pred HHHHHHHHHHHh----hcC--eEEEEEeC---------CcHhHHHHHhcCcceEEEecCCCCC---CCce-EEEccceEE
Confidence 455677777777 774 66666653 4567899999995554443211111 1222 356777778
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++...... ......+++||. +
T Consensus 76 ~~v~~~~~~~~------------------------------------------------------~~~~~~~~~~L~--~ 99 (208)
T 3fd3_A 76 HATASPDFMAR------------------------------------------------------HFADGVTPAALA--R 99 (208)
T ss_dssp EEEECHHHHHH------------------------------------------------------HCTTCSCHHHHT--T
T ss_pred EEEEChHHhhh------------------------------------------------------hccCCCCHHHHh--c
Confidence 88877543110 001245889995 5
Q ss_pred CeEEEe-cCch-HHHHHHH--hhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCccc
Q 037761 569 HFVGFQ-SGSF-VEDFLVK--QLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIY 644 (753)
Q Consensus 569 ~~~~~~-~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 644 (753)
.++... .++. ...+... ....+. .....++.+.....+..|. .-+++-... ........ .+..+.+..
T Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~-~~~~~~~~--~l~~~~~~~ 171 (208)
T 3fd3_A 100 APGLTFNQKDRLQASWIRTALGEDVSY-PTHWLPSTDGFVKASLAGM----GWGLNPVQL-VAEHLAAG--RLVELMPGT 171 (208)
T ss_dssp SCEEESSTTCCHHHHHHHHHHSSCCCC-CEEECCCHHHHHHHHHTTS----CBEEEEHHH-HHHHHHHT--SSEESSTTC
T ss_pred CCeEEeCCCchhHHHHHHHhcCCCCCc-ceEEECCHHHHHHHHHhCC----CeecccHHH-HHhhccCC--ceEEecCCC
Confidence 444443 2222 2222221 122333 4556788899999999997 555554433 33333322 343333222
Q ss_pred ccCceEEEEcCCCCCchHhHHHHHHh
Q 037761 645 RTDGLGFAFAKDSPLVSHFSQAILLV 670 (753)
Q Consensus 645 ~~~~~~~~~~k~s~l~~~~n~~i~~l 670 (753)
. .+++++.+++.+........+..+
T Consensus 172 ~-~~~~l~~~~~~~~~~~~~~f~~~l 196 (208)
T 3fd3_A 172 P-LDIPLYWQVNRLAAERLAGLTANM 196 (208)
T ss_dssp C-EEEEEEEEECTTTTTTTHHHHHHH
T ss_pred C-ccEEEEecCCCccCHHHHHHHHHH
Confidence 2 346677777654444444444333
No 252
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=77.24 E-value=8 Score=37.81 Aligned_cols=122 Identities=11% Similarity=0.145 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH-HHHH
Q 037761 13 CGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS-AVLQ 91 (753)
Q Consensus 13 ~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~-~~l~ 91 (753)
....+.+..|.++.++.+|+-+.++..+.++..+-+.+++|+|... ...+ ..+.
T Consensus 52 ~~~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~ 106 (272)
T 1zuw_A 52 QYTWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVI-------------------------QPGARAAIK 106 (272)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEccc-------------------------HHHHHHHHH
Confidence 3445566666652599999987777666677777788899998842 1112 2223
Q ss_pred HcCCeEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEeec------cCCCC-c----hhhHHHHHHHHhcCCccEEEE
Q 037761 92 NFSWHEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHMSK------IPTSA-E----DFQISKELSKLSTMQTRVFIV 158 (753)
Q Consensus 92 ~~~w~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~-~----~~d~~~~l~~l~~~~~~vIi~ 158 (753)
..+-++|+|+.+....- ...+++.+++. |.++..... +..+. + ...+...+..+++.++|+|++
T Consensus 107 ~~~~~rIgVlaT~~T~~---s~~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVL 183 (272)
T 1zuw_A 107 VTDNQHIGVIGTENTIK---SNAYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLIL 183 (272)
T ss_dssp HCSSSEEEEEECHHHHH---TTHHHHHHHHHCTTCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hcCCCEEEEEEChhhhh---hhHHHHHHHHhCCCCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 34567888888643221 12234444433 555532111 11111 1 133445666677778999998
Q ss_pred EeCh
Q 037761 159 HMNT 162 (753)
Q Consensus 159 ~~~~ 162 (753)
.|..
T Consensus 184 GCTh 187 (272)
T 1zuw_A 184 GCTH 187 (272)
T ss_dssp ESTT
T ss_pred CccC
Confidence 7753
No 253
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=77.23 E-value=24 Score=34.53 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=56.6
Q ss_pred cCChhHhhhcC--CeEEEecC------chHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHH
Q 037761 558 FADLKKLRTES--HFVGFQSG------SFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVF 629 (753)
Q Consensus 558 i~s~~dL~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~ 629 (753)
|+|++||.+.. .++|+..+ .-.... .+.+++....+..+ +......++.+|+ .+++....+.-..
T Consensus 130 l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l-~~~Ygl~~~~~~~~-d~g~~~~A~~~~~----~~v~~~wsp~~~~- 202 (282)
T 3o66_A 130 LETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGF-KKEYGFDFGTVRPM-QIGLVYDALNTEK----LDVALGYSTDGRI- 202 (282)
T ss_dssp CSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHH-HHHHCCCCSEEEEE-CGGGHHHHHHTTS----CSEEEEETTCHHH-
T ss_pred CCCHHHHHhcccceEEecCcccccCchhHHHHH-HHHcCCCCcccccc-CHHHHHHHHHcCC----CeEEEEeCCCchh-
Confidence 89999997542 36777542 333333 44566643344444 3346788999998 8888877776544
Q ss_pred HhcCCCCcEEeCc---ccccCceEEEEcCC----CC-CchHhHHH
Q 037761 630 LKKYSSKYTTAGP---IYRTDGLGFAFAKD----SP-LVSHFSQA 666 (753)
Q Consensus 630 ~~~~~~~l~~~~~---~~~~~~~~~~~~k~----s~-l~~~~n~~ 666 (753)
.++ +|.++.. .+..+.....++++ .| +.+.|++.
T Consensus 203 -~~~--dL~~LeD~k~~fp~~~~~~vvr~~~~~~~P~~~~~L~~l 244 (282)
T 3o66_A 203 -AAY--DLKVLKDDKQFFPPYAASAVATNELLRQHPELKTTINKL 244 (282)
T ss_dssp -HHT--TCEECBCTTCCSCCCBEEEEEEHHHHHHCTHHHHHHHTT
T ss_pred -hhc--CceEcCCCcccccccceeEEEcHHHHhHCHHHHHHHHHH
Confidence 222 3445533 23333445566654 45 44444444
No 254
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=76.69 E-value=7.4 Score=38.43 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHHHHH
Q 037761 13 CGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQN 92 (753)
Q Consensus 13 ~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~l~~ 92 (753)
..+.+.++.|.. .++.+|+-+..+..+.++..+-+...+|+|...- .++...+..
T Consensus 73 ~~~~~~~~~L~~-~g~d~IVIACNTas~~~l~~lr~~~~iPVigiie------------------------pa~~~A~~~ 127 (290)
T 2vvt_A 73 QFTWEMADFLLK-KRIKMLVIACNTATAVALEEIKAALPIPVVGVIL------------------------PGARAAVKV 127 (290)
T ss_dssp HHHHHHHHHHHT-TTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSH------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccH------------------------HHHHHHHHh
Confidence 344555555555 4999999877776666777787888999988410 111112223
Q ss_pred cCCeEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEeeccC-------CCC-c----hhhHHHHHHHHhcCCccEEEE
Q 037761 93 FSWHEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHMSKIP-------TSA-E----DFQISKELSKLSTMQTRVFIV 158 (753)
Q Consensus 93 ~~w~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~~~~~-------~~~-~----~~d~~~~l~~l~~~~~~vIi~ 158 (753)
.+-++|+|+.+....-. ..+++.+++. +.++.... .+ .+. + ...+...+..+++.++|+||+
T Consensus 128 ~~~~rIgVLaT~~T~~s---~~y~~~l~~~~~~~~v~~~~-~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVL 203 (290)
T 2vvt_A 128 TKNNKIGVIGTLGTIKS---ASYEIAIKSKAPAIEVTSLA-CPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLIL 203 (290)
T ss_dssp CSSSEEEEEECHHHHHT---THHHHHHHTTCTTSEEEEEE-CTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEE
T ss_pred cCCCEEEEEeCcHhhhh---HHHHHHHHHhCCCCEEEecc-CHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45678888886543211 2355555554 45543221 11 010 1 123445566666678899888
Q ss_pred EeCh
Q 037761 159 HMNT 162 (753)
Q Consensus 159 ~~~~ 162 (753)
.|..
T Consensus 204 GCTh 207 (290)
T 2vvt_A 204 GCTH 207 (290)
T ss_dssp CSTT
T ss_pred CCcC
Confidence 7753
No 255
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=76.30 E-value=2.9 Score=39.82 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEe
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVG 465 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~ 465 (753)
.++++.++..++++.|. +++++.. .++.....+|.+|++|+-..
T Consensus 19 ~~il~~v~~~l~k~~Gi--~veiv~F--------~Dy~~pN~AL~~G~IDaN~f 62 (245)
T 3up9_A 19 AKILTYINDNLAADAGI--KLDIVEY--------TDYVQPNTALNDGDLDANFY 62 (245)
T ss_dssp HHHHHHHHHHTHHHHTE--EEEEEEC--------SSSHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHHcCC--eEEEEEe--------cCcccHHHHHHcCCCceecc
Confidence 45666666666556784 5555554 26899999999999998753
No 256
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=76.00 E-value=2.4 Score=42.91 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceee-eccccccccce--E
Q 037761 413 EIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYV-EFTLPYSESGV--T 489 (753)
Q Consensus 413 dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~-~fs~p~~~~~~--~ 489 (753)
..++.+++.++++.|-+++ .+..- .=|+-.+++++++.|.+||+..+......+...+ -|+.||...+. .
T Consensus 31 ~~~~~fa~~Vee~s~G~i~-v~p~g------~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v~~lPfl~~~~~~~ 103 (326)
T 3fxb_A 31 VYAQKFKEEIEANSDHEIQ-LFPYG------TLGESADIMEQTQDGILQFVDQSPGFTGSLIPEAQVFFVPYLLPTDQDH 103 (326)
T ss_dssp HHHHHHHHHHHHSSSCCCE-EECTT------SSCSHHHHHHHHHHTSCSEEECCHHHHTTTSGGGGGGGSTTCSCSCHHH
T ss_pred HHHHHHHHHHHHHcCCeEE-EeeCC------CCCCHHHHHHHHhCCCeeEEEecchhhhhhCcchHHhcCCeecCCHHHH
Confidence 3456677777779987777 33321 1146789999999999999986554444433222 24567765421 0
Q ss_pred E--EEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhc
Q 037761 490 M--LVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTE 567 (753)
Q Consensus 490 ~--~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~ 567 (753)
. +...+.. ....+.-.+==..+.+...+...... ++. ..+|++++|| +
T Consensus 104 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~L~~~~~G~~~-~~~---~kpI~s~~Dl--k 153 (326)
T 3fxb_A 104 LARFFKESKA------------------------INDMFKPLYADQGLELLNMFPEGEVA-MTT---KTPVTTCSDL--D 153 (326)
T ss_dssp HHHHHHHCHH------------------------HHTTSHHHHHTTTEEEEEEEEEEEEE-EEE---SSCCSSGGGS--T
T ss_pred HHHHHcCcHH------------------------HHHHHHHHHHHcCeEEEEEecCCceE-Eec---CCCCCChHHh--C
Confidence 0 1110000 00000000000112222333333322 332 2479999999 6
Q ss_pred CCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 568 SHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
|+++-+..+......++ ..+. ..++. ...|.+.+|+.|. +|+...+...+
T Consensus 154 GlKiR~~~~~~~~~~~~-alGa---~pv~m-~~~Evy~ALq~Gv----vDg~e~~~~~~ 203 (326)
T 3fxb_A 154 EVKFRVMTNPLLVESYK-AFGA---TPTPL-PWGEVYGGLQTNV----IQGQENPTFFL 203 (326)
T ss_dssp TCEEEECSCHHHHHHHH-HHTS---EEEEC-CGGGHHHHHHTTS----CCEEEEEHHHH
T ss_pred CCEEEecCCHHHHHHHH-HcCC---eeeec-CHHHHHHHHHcCC----cceEecCHHHH
Confidence 99998876666677777 3433 44443 5678999999999 99998766543
No 257
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=75.66 E-value=8.9 Score=36.60 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEE
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVV 464 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~ 464 (753)
.|+++.++..++ +-|+ +++++.. ..|...-.+|.+|++|+-.
T Consensus 18 aeil~~vk~~l~-k~Gi--~leiv~F--------~Dy~~pN~AL~~G~iDaN~ 59 (249)
T 4got_A 18 AEILKEAEPLLK-EKGY--TLKVKVL--------SDYKMYNKALADKEVDANY 59 (249)
T ss_dssp HHHHHHHHHHHH-TTTC--EEEEECC--------SSTHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHH-hcCC--eEEEEEe--------CCccchhHHHHcCCcceee
Confidence 567777776666 4585 5555554 2688999999999999764
No 258
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=75.07 E-value=2.6 Score=40.24 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=49.2
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccc---eeeeccccccc
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRT---DYVEFTLPYSE 485 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~---~~~~fs~p~~~ 485 (753)
|+..+|+..+.+ +.|.++++.+. ....++.++.+|.+|+.+..-....+.. ....-..++..
T Consensus 19 ~ll~~L~~~Fek----~~gv~V~~~~~-----------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~ 83 (237)
T 3muq_A 19 GLLDYLLPQFEK----DTGYKVDVIAA-----------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMY 83 (237)
T ss_dssp THHHHHHHHHHH----HHCCEEEEEEE-----------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEE
T ss_pred hHHHHHHHHHHH----HhCceEEEEEc-----------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEe
Confidence 455566666666 88865555444 4578899999999999975543332221 01112367888
Q ss_pred cceEEEEecccCC
Q 037761 486 SGVTMLVPVKRDN 498 (753)
Q Consensus 486 ~~~~~~v~~~~~~ 498 (753)
..+++++|+.++.
T Consensus 84 N~lVlV~P~~~P~ 96 (237)
T 3muq_A 84 NDFVIVGPKADPA 96 (237)
T ss_dssp EEEEEEECTTCTT
T ss_pred CCEEEEEeCCChh
Confidence 8999999987653
No 259
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=74.19 E-value=4.9 Score=38.47 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEee
Q 037761 413 EIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGD 466 (753)
Q Consensus 413 dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~ 466 (753)
++++.+...++ +.|+ +++++.. ..|.....+|.+|++|+....
T Consensus 24 ~il~~v~~~~~-k~Gi--~veiv~F--------~Dy~~pN~AL~~G~iDaN~fQ 66 (252)
T 4ib2_A 24 EILEQAKSILK-KEGY--QLEVTVF--------DDYVQPNEVVESGEFDANYFQ 66 (252)
T ss_dssp HHHHHHHHHHH-HTTC--EEEEEEC--------SSSSHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHH-hcCC--eEEEEEe--------cChhhHHHHHHcCCcCeeecC
Confidence 34444444443 5685 5555554 268899999999999987533
No 260
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=74.02 E-value=7.7 Score=37.46 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHH-HHH
Q 037761 13 CGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISA-VLQ 91 (753)
Q Consensus 13 ~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~-~l~ 91 (753)
....+.++.|.+ .++.+++-+..+..+.++..+-+..++|+|... ++.++ .+.
T Consensus 49 ~~~~~~~~~L~~-~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~-------------------------e~~~~~A~~ 102 (254)
T 1b73_A 49 RYSLECAGFLKD-KGVDIIVVACNTASAYALERLKKEINVPVFGVI-------------------------EPGVKEALK 102 (254)
T ss_dssp HHHHHHHHHHHT-TTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH-------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee-------------------------HHHHHHHHH
Confidence 344555555554 599999986666554456667777889988841 22222 233
Q ss_pred HcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeec--cCCC--Cc-------hhhHHHHHHHHhcCCccEEEEEe
Q 037761 92 NFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSK--IPTS--AE-------DFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 92 ~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~--~~~~--~~-------~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
..+-++|+|+.+....- ....++.+++.|+++..... +-.. .+ ...+...+.++.+. +|+|++.|
T Consensus 103 ~~~~~rigVlaT~~T~~---~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGC 178 (254)
T 1b73_A 103 KSRNKKIGVIGTPATVK---SGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGC 178 (254)
T ss_dssp HCSSCEEEEEECHHHHH---HCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECC
T ss_pred ccCCCEEEEEEChHHhh---hHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECc
Confidence 45668999998654422 22345566678887652211 1110 01 12333444455555 99999977
Q ss_pred Ch
Q 037761 161 NT 162 (753)
Q Consensus 161 ~~ 162 (753)
..
T Consensus 179 T~ 180 (254)
T 1b73_A 179 TH 180 (254)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 261
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=73.53 E-value=22 Score=30.32 Aligned_cols=86 Identities=8% Similarity=0.006 Sum_probs=57.7
Q ss_pred EEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH----HHHHHHHHH
Q 037761 97 EVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA----LASRLFALV 172 (753)
Q Consensus 97 ~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~----~~~~~~~~a 172 (753)
+|.+.....+.-.-....+...++..|.++.+--... .....+..+++.+||+|.+++... .+..+++++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~------p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS------PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE------CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 5555555555555566778888999999998664421 233456666667899999987532 456678888
Q ss_pred HHcCCCCCCEEEEEcCc
Q 037761 173 AKNGMMSKGYTWIVTAC 189 (753)
Q Consensus 173 ~~~g~~~~~~~wi~~~~ 189 (753)
++.|.. .-.+|+++..
T Consensus 79 ~~~g~~-~i~v~vGG~~ 94 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGNI 94 (137)
T ss_dssp HHTTCT-TCEEEEEESC
T ss_pred HhcCCC-CCEEEEECCC
Confidence 888863 3556776654
No 262
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=72.61 E-value=47 Score=32.41 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHHHHHHHHHH---Hh-cCCccceEEEecCCCCCCCCCChHHHHHHHHc-C-cccEEEeeeeeeccc---ceeeeccccc
Q 037761 413 EIFNATLEIVE---EK-LGMKIHPQLVPYEDENGEMAGTYDELLYQIKL-K-KFDAVVGDISIVASR---TDYVEFTLPY 483 (753)
Q Consensus 413 dll~~ia~~~~---~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~Di~~~~~~~t~~r---~~~~~fs~p~ 483 (753)
+.++.+.+.++ ++ .|.++++..... +...++..|.+ | .+|+.+.+-....++ ........||
T Consensus 17 ~~~~~~~~~F~~~~~~~~gi~V~~~~~~~---------~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~ 87 (296)
T 3cg1_A 17 VPFQEVEKEFSEYAERNLGIKVSFQDEAS---------GSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLF 87 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCEEEEEEEE---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeecC---------CHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceec
Confidence 44555555554 46 786655510322 45778888887 5 599987542111111 1112355678
Q ss_pred cccceEEEEeccc
Q 037761 484 SESGVTMLVPVKR 496 (753)
Q Consensus 484 ~~~~~~~~v~~~~ 496 (753)
....+++++++..
T Consensus 88 ~~~~~vi~~~~~~ 100 (296)
T 3cg1_A 88 ATNEIVIAFTDKS 100 (296)
T ss_dssp EECCEEEEECTTS
T ss_pred ccccEEEEEcCCC
Confidence 8888899988764
No 263
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=72.56 E-value=9.8 Score=38.77 Aligned_cols=95 Identities=8% Similarity=0.058 Sum_probs=63.6
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS 149 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 149 (753)
|.-+...+... ..+.++++.+|.+++.||++.... ...+.+.+.+++.+..+ +. .+.++.+.......+..++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~p~~~~v~~~~~~~~ 84 (353)
T 3hl0_A 12 PARIVFSAGSS---ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMHTPVEVTKTAVEAYR 84 (353)
T ss_dssp CCCEEECTTGG---GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCCCcHHHHHHHHHHHh
Confidence 33344444432 346677888898999888865543 35678888888866543 22 2333445567778888888
Q ss_pred cCCccEEEEEeChH--HHHHHHHH
Q 037761 150 TMQTRVFIVHMNTA--LASRLFAL 171 (753)
Q Consensus 150 ~~~~~vIi~~~~~~--~~~~~~~~ 171 (753)
+.++|+|+-.|-+. |+..++..
T Consensus 85 ~~~~D~IIavGGGs~iD~aK~iA~ 108 (353)
T 3hl0_A 85 AAGADCVVSLGGGSTTGLGKAIAL 108 (353)
T ss_dssp HTTCSEEEEEESHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHh
Confidence 89999999988765 55666544
No 264
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=72.14 E-value=5.2 Score=40.43 Aligned_cols=169 Identities=13% Similarity=0.100 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHc------CcccEEEeeeeeecccce---eeecccccc
Q 037761 414 IFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKL------KKFDAVVGDISIVASRTD---YVEFTLPYS 484 (753)
Q Consensus 414 ll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~Di~~~~~~~t~~r~~---~~~fs~p~~ 484 (753)
.++.+++.++++.|-++++++.+.+. =|+-.+++++++. |.+|++..+......... .--|..||.
T Consensus 27 ~~~~fa~~v~e~s~G~i~i~v~p~g~-----Lg~~~e~~~~v~~~~~~~~G~id~~~~~~~~~~~~~P~~~~~v~~lPfl 101 (328)
T 3u65_B 27 ELKKLSAEWSEITGGLVSMKFYDMSS-----LGGEREGIRKLKSSRPGQAAPLDGAVFSCLGLSELAPDSGIYTLSVPFL 101 (328)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEHHH-----HTCHHHHHHHTSCSSTTSCCSCSEEEECHHHHHHHSTTCCBGGGGSTTT
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCC-----cCCHHHHHHHHhhhccCCCCceeEEEeccHhhhhhCChhhhhheeCCee
Confidence 35567777777999888888776311 1357899999999 999999755432222211 122456766
Q ss_pred ccceEEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHh
Q 037761 485 ESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKL 564 (753)
Q Consensus 485 ~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL 564 (753)
..+.--+.. ++.+ .++.+.--+==..+.+...+......+.+ ..+|+|++||
T Consensus 102 f~~~~~~~~-----------~~~~-------------~~~~l~~~~~~~g~~~L~~~~~G~r~~~s----~kpI~s~~Dl 153 (328)
T 3u65_B 102 IQNEKDLER-----------VLHE-------------LREDLDRPFRAAGFRVITWTNAGWLSFYT----RAPYASLGQL 153 (328)
T ss_dssp SCSHHHHHH-----------HHHH-------------THHHHHHHHHHTTEEEEEEEEEEEEEEEE----SSCCSSHHHH
T ss_pred cCCHHHHHH-----------HHHH-------------HHHHHHHHHHHCCeEEEEeecCCceEEEe----CCCCCCHHHH
Confidence 543210000 0000 00111100001123333344444444432 2479999999
Q ss_pred hhcCCeEEE-ecC-chHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccH
Q 037761 565 RTESHFVGF-QSG-SFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYI 626 (753)
Q Consensus 565 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~ 626 (753)
+|+++-+ ..+ ......++ ..+. +.++. ...|...+|+.|. +|+.......+
T Consensus 154 --kGlKiR~~~~~s~~~~~~~~-alGa---~pv~m-~~~Evy~ALq~Gv----vDg~e~~~~~~ 206 (328)
T 3u65_B 154 --KKQTIALSSLDSSVLGTCFR-ICGF---DIKDA-PNARLAPLLKAGS----IDGFLSVHLFT 206 (328)
T ss_dssp --HHSEEEECSTTHHHHHHHHH-HHTC---EEEEC-TTCCHHHHHHHTS----CCEEEECHHHH
T ss_pred --CCCEEEECCCCChHHHHHHH-HCCC---eeeec-CHHHHHHHHHcCc----cceEecCHHHH
Confidence 5999887 444 45556666 3433 33433 4467889999999 99999876554
No 265
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=71.65 E-value=11 Score=37.42 Aligned_cols=79 Identities=8% Similarity=0.082 Sum_probs=59.0
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHH-HHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTAL-ASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~-~~~~~~~a 172 (753)
++|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++...... ....++.+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 678888999999999999988876543 223445566788888889999999876443 34577777
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 77664
No 266
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=71.23 E-value=35 Score=30.09 Aligned_cols=86 Identities=10% Similarity=-0.036 Sum_probs=59.6
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC----hHHHHHHHHH
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN----TALASRLFAL 171 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~----~~~~~~~~~~ 171 (753)
.+|.+.....+.-.-....+...|+..|.++.+--.. ......+..+++.+||+|.+++. .+.+..++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 4666666566655666778888899999998754321 13345667777789999999875 3467778888
Q ss_pred HHHcCCCCCCEEEEEcC
Q 037761 172 VAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 172 a~~~g~~~~~~~wi~~~ 188 (753)
+++.|.. .-.+|+++.
T Consensus 93 L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHTTCT-TSCEEEEEC
T ss_pred HHhcCCC-CCEEEEeCC
Confidence 8888752 345677664
No 267
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=70.11 E-value=19 Score=33.10 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=60.7
Q ss_pred CCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccC
Q 037761 568 SHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTD 647 (753)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 647 (753)
+++|+.........||.+ .+. +.++......-|.- ..-|- .|++++-..+...+-++ +|.++. .+...
T Consensus 108 ~~RIATkyp~l~~~yf~~-~gi-~~~ii~l~GsvE~a--p~~Gl----AD~IvDivsTG~TLraN---gL~~ie-~I~~s 175 (206)
T 1ve4_A 108 IRRVATKYPNFTARLLKE-RGW-AADVVELSGNIELA--AVTGL----ADAVVDVVQTGATLRAA---GLVEVE-VLAHS 175 (206)
T ss_dssp CCEEEESCHHHHHHHHHH-TTC-CCEEEECSSCTHHH--HHTTS----SSEEEEEESSSHHHHHT---TCEEEE-EEEEE
T ss_pred CCEEEECchHHHHHHHHH-CCC-cEEEEECCCceeec--cCCCC----ceEEEEeccCHHHHHHC---CCEEeE-EEEee
Confidence 779999888888999984 344 35566555554543 34466 89999888887776666 677774 44445
Q ss_pred ceEEEEcCCCC--CchHhHHHHHHhh
Q 037761 648 GLGFAFAKDSP--LVSHFSQAILLVR 671 (753)
Q Consensus 648 ~~~~~~~k~s~--l~~~~n~~i~~l~ 671 (753)
...++.+|.+. -.+.++..+.+|+
T Consensus 176 sA~LI~n~~s~~~k~~~i~~l~~rl~ 201 (206)
T 1ve4_A 176 TARLVVNRQALKLKRAVLKPLIQRLR 201 (206)
T ss_dssp CEEEEECHHHHHHTHHHHHHHHHHHH
T ss_pred EEEEEEcchHhHHHHHHHHHHHHHHH
Confidence 66677776652 2345666666654
No 268
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=69.69 E-value=5.4 Score=37.06 Aligned_cols=145 Identities=8% Similarity=-0.033 Sum_probs=88.4
Q ss_pred HHHHHHHHcCcccEEEeeeeeecccceeeecc--ccccccceEEEEecccCCCCceeEEEecCccccceeeccccchhhH
Q 037761 449 DELLYQIKLKKFDAVVGDISIVASRTDYVEFT--LPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFV 526 (753)
Q Consensus 449 ~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs--~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~ 526 (753)
.++-..+..|.+|+++.+--.-.|....+.-- ..|....+++.+|...
T Consensus 57 ~DIp~yV~~G~~DlGItG~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~------------------------------ 106 (214)
T 2vd2_A 57 MDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNT------------------------------ 106 (214)
T ss_dssp THHHHHHHHTSSSEEECCTHHHHSCSCSSEEEEECTTSCCEEEEEECTTC------------------------------
T ss_pred hhHHHHHhCCCccEEEeeeeeeeecCCCeEEeeccccCCEEEEEEEECCC------------------------------
Confidence 78899999999999998875433332222211 2344455555555431
Q ss_pred HHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecCCCHHHHHHH
Q 037761 527 LVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEA 606 (753)
Q Consensus 527 ~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (753)
+++++ +++|+.........||.+ .+. +.++......-|.-
T Consensus 107 ---------------------------------~~~~~---~~RIATkyp~l~~~yf~~-~gi-~~~ii~l~GsvE~a-- 146 (214)
T 2vd2_A 107 ---------------------------------DWSGV---APRIATKYPNVASSYFRE-QGE-QVEIIKLNGSIELA-- 146 (214)
T ss_dssp ---------------------------------CCCSS---SCEEEESCHHHHHHHHHH-HCC-CCEEEECCSCTTHH--
T ss_pred ---------------------------------ChhhC---CcEEEECcHHHHHHHHHH-cCC-cEEEEECCCceeec--
Confidence 23444 789999888888999984 444 35666555544443
Q ss_pred HhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCC-C-chHhHHHHHHhh
Q 037761 607 LSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSP-L-VSHFSQAILLVR 671 (753)
Q Consensus 607 l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~-l-~~~~n~~i~~l~ 671 (753)
..-|- .|++++-..+...+-++ +|.++. .+......++.+|.+. . .+.++..+.+|+
T Consensus 147 P~~Gl----ADaIvDivsTG~TLraN---gL~~ie-~I~~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 205 (214)
T 2vd2_A 147 PLIGL----ADRIVDIVSTGQTLKEN---GLVETE-HICDITSRFIVNPVSYRMKDDVIDEMASRLS 205 (214)
T ss_dssp HHTTS----CSEEEEEECCSSSSCTT---SCEEEE-EEEECCCEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC----ceEEEEEeCCHHHHHHC---CCEEeE-EEEeeEEEEEEcchHhHHHHHHHHHHHHHHH
Confidence 33465 78888776655443333 788885 4445566677777652 2 245666666654
No 269
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=69.63 E-value=13 Score=36.24 Aligned_cols=79 Identities=6% Similarity=0.109 Sum_probs=58.8
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh-HHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT-ALASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~-~~~~~~~~~a 172 (753)
++|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++.... ......++.+
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888874 557778889999999999998876532 2234455667888888899999988654 4456678888
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 270
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=69.15 E-value=12 Score=36.42 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.3
Q ss_pred HhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEee
Q 037761 23 LKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISF 57 (753)
Q Consensus 23 i~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~ 57 (753)
+.+.++.+|+=+..+..+.++..+-+.+.+|+|..
T Consensus 82 L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 82 FEQFQIDMLIIACNTASAYALDALRAKAHFPVYGV 116 (274)
T ss_dssp HTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECS
T ss_pred HHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcC
Confidence 34569999998777776666777888889999963
No 271
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=68.81 E-value=4.6 Score=39.39 Aligned_cols=41 Identities=27% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccC-CccEEe
Q 037761 15 KLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKA-QVPIIS 56 (753)
Q Consensus 15 a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~-~vP~is 56 (753)
..+.++.|.+ .++.+|+-+..+..+.++..+-+.+ .+|+|.
T Consensus 58 ~~~~~~~L~~-~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 58 AAQTAKFLID-QEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHHHH-TTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHH-CCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 3444445554 5999999987776666777777888 899997
No 272
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=68.79 E-value=13 Score=38.04 Aligned_cols=83 Identities=6% Similarity=-0.017 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA- 163 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~- 163 (753)
.+.++++.+|.+++.||++....+ ..+.+.+.+++.+..+ +. ...++.+.......+..+++.++|+|+-.|-+.
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 101 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-YA-GAVMHVPIESARDATARAREAGADCAVAVGGGST 101 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-ec-CCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHH
Confidence 466778889999999998765443 4677888888775433 32 233344556777788888888999999988765
Q ss_pred -HHHHHHHH
Q 037761 164 -LASRLFAL 171 (753)
Q Consensus 164 -~~~~~~~~ 171 (753)
|+..++..
T Consensus 102 iD~aK~iA~ 110 (358)
T 3jzd_A 102 TGLGKAIAL 110 (358)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 66666644
No 273
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=67.77 E-value=97 Score=30.43 Aligned_cols=84 Identities=10% Similarity=-0.090 Sum_probs=51.3
Q ss_pred ceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhh
Q 037761 593 QTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRE 672 (753)
Q Consensus 593 ~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~ 672 (753)
++..+.+..+....+.+|+ +++.+..........+... ++.++.+-......+++++++++-.+.--+.|.-|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s 249 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAE----APFGSVWNGRMTALEQSGV-KVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATS 249 (320)
T ss_dssp GEEEECSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTTC-CCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTS
T ss_pred ceeEeCCCchHHHHHHcCC----EEEEEeecHHHHHHHhCCC-CeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhC
Confidence 3444556678888999998 8877765544433333322 3444332112223468889999987777788887776
Q ss_pred cchHHHHHHH
Q 037761 673 NQTRMDRIEK 682 (753)
Q Consensus 673 ~G~~~~~~~~ 682 (753)
.. ....+.+
T Consensus 250 ~e-~q~~~~~ 258 (320)
T 4euo_A 250 AQ-AQADMAT 258 (320)
T ss_dssp HH-HHHHHHH
T ss_pred HH-HHHHHHH
Confidence 65 3444444
No 274
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=67.10 E-value=14 Score=36.33 Aligned_cols=84 Identities=7% Similarity=-0.014 Sum_probs=58.9
Q ss_pred CCeEEEEEEee---CCcccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHH
Q 037761 94 SWHEVVLMYED---TNYGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRL 168 (753)
Q Consensus 94 ~w~~vail~~d---~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~ 168 (753)
.-++|+++..+ +.|.....+.+.+.+++. |..+..........+.......+..+.+.++|.|++..... .....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 44678888764 457788889999999988 76665543322222345566778888889999999987643 34566
Q ss_pred HHHHHHcCC
Q 037761 169 FALVAKNGM 177 (753)
Q Consensus 169 ~~~a~~~g~ 177 (753)
++.+.+.|+
T Consensus 87 ~~~~~~~~i 95 (304)
T 3gbv_A 87 TDALNELGI 95 (304)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777777775
No 275
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=66.87 E-value=9.1 Score=37.06 Aligned_cols=113 Identities=8% Similarity=-0.018 Sum_probs=58.3
Q ss_pred CcCChhHhhhcCCeEEEecCchHHH----HHHHhhCCC----C--------C---------ceecCCCHHHHHHHHhcCC
Q 037761 557 TFADLKKLRTESHFVGFQSGSFVED----FLVKQLNFS----R--------N---------QTRPLSNFGEYKEALSNGS 611 (753)
Q Consensus 557 ~i~s~~dL~~~~~~~~~~~~~~~~~----~~~~~~~~~----~--------~---------~~~~~~~~~~~~~~l~~g~ 611 (753)
.|+|++||. .|.+|++..+.+.+. .|+ ..++- . . +++.+ ...+....+ +.
T Consensus 112 kiksl~dL~-~Ga~IAIPnDptN~~RaL~lL~-~aGLIkLk~~~~~~~~T~~DI~eNpk~lk~~el-daaql~r~l--~d 186 (275)
T 3gxa_A 112 KLKSLEEVK-DGSTVSAPNDPSNFARVLVMLD-ELGWIKLKDGINPLTASKADIAENLKNIKIVEL-EAAQLPRSR--AD 186 (275)
T ss_dssp SCCCGGGCC-TTCEEEEECSHHHHHHHHHHHH-HTTSSEECTTCCGGGCCGGGEEECTTCCEEEEE-CGGGHHHHT--TT
T ss_pred CCCCHHHcC-CCCEEEecCCccHHHHHHHHHH-HCCCEEecCCCCCCcCCHHHHhcCCCCCEEEEe-CHHHHhhhc--cc
Confidence 489999995 599999987766443 222 12210 0 0 11111 233445544 23
Q ss_pred CCCCeeEEEeccccHHHHHhcC---CCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhh
Q 037761 612 RKGGVSAIFEEIPYIKVFLKKY---SSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKY 684 (753)
Q Consensus 612 ~~~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~ 684 (753)
+|+.+.+..+ .+.-. .+.+. ...-.++--.+++++++.=.+.+.+.+.-++... +-+.+.++|
T Consensus 187 ----vD~avIn~ny---a~~agl~~~dal~--E~~~~~y~Nvivvr~~d~d~~~ik~lv~a~~S~e-vk~~i~~~y 252 (275)
T 3gxa_A 187 ----VDFAVVNGNY---AISSGMKLTEALF--QEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDA-FKAYAHKRF 252 (275)
T ss_dssp ----SSEEEECHHH---HHHTTCCGGGCSE--ECCCCTTCCEEEEEGGGTTCHHHHHHHHHTTSHH-HHHHHHHHS
T ss_pred ----cCEEEEchhH---HHHcCCCccccee--cCCCCCcEEEEEEeccccCCHHHHHHHHHHcCHH-HHHHHHHHc
Confidence 6777766432 22221 11232 2222233345777776655566666666666666 444555554
No 276
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=66.07 E-value=21 Score=31.83 Aligned_cols=67 Identities=7% Similarity=-0.023 Sum_probs=49.7
Q ss_pred cCCeEEEEEEeeCCcc---cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeC
Q 037761 93 FSWHEVVLMYEDTNYG---AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMN 161 (753)
Q Consensus 93 ~~w~~vail~~d~~~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~ 161 (753)
+.-.+++||...|+-| ......+...+++.|.++.....++++ ..++...+.+..+ .++|+|+..+-
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 3446899999877665 234567888999999998888777754 5577778877665 37899998865
No 277
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=65.94 E-value=11 Score=35.47 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecc--cce---eeec--cccccc
Q 037761 413 EIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVAS--RTD---YVEF--TLPYSE 485 (753)
Q Consensus 413 dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~--r~~---~~~f--s~p~~~ 485 (753)
+.++.+.+.++++.|.++++ .. ++...++..|. +.+|+++.+-....+ ..+ .++. ..++..
T Consensus 13 ~~~~~~~~~F~~~~gi~V~~--~~---------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (237)
T 2hxw_A 13 TALKDIANKYSEKTGVKVNV--NF---------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYF 80 (237)
T ss_dssp HHHHHHHHHHHHHHCCCEEE--EE---------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHhCceEEE--Ee---------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCccccccccc
Confidence 34444444444488855544 33 25678888888 899999765421111 111 2221 235666
Q ss_pred cceEEEEecccC
Q 037761 486 SGVTMLVPVKRD 497 (753)
Q Consensus 486 ~~~~~~v~~~~~ 497 (753)
...++++++.++
T Consensus 81 ~~~~l~~~~~~~ 92 (237)
T 2hxw_A 81 REAIILTQKGNP 92 (237)
T ss_dssp EEEEEEESTTCT
T ss_pred CceEEEEeCCCC
Confidence 677777776643
No 278
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=65.47 E-value=32 Score=31.81 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=60.7
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC----hHHHHHHHHH
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN----TALASRLFAL 171 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~----~~~~~~~~~~ 171 (753)
.+|.+.....+.-.-....+...++.+|.++.+--. .. .....+..+++.+||+|.+.+. .+.+..++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~v---p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---DI---EPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---SB---CHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---CC---CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 466666666666666677888889999999875432 11 3344556666678999999875 3367778888
Q ss_pred HHHcCCCCCCEEEEEcCcc
Q 037761 172 VAKNGMMSKGYTWIVTACL 190 (753)
Q Consensus 172 a~~~g~~~~~~~wi~~~~~ 190 (753)
+++.|....-.+++++...
T Consensus 163 l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp HHHTTCGGGCEEEEESTTC
T ss_pred HHhcCCCCCCeEEEECCCC
Confidence 8888864345567766543
No 279
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.38 E-value=15 Score=36.82 Aligned_cols=89 Identities=7% Similarity=0.037 Sum_probs=56.4
Q ss_pred HHHHHHHcCCeEEEEEEee----CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 86 ISAVLQNFSWHEVVLMYED----TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 86 ~~~~l~~~~w~~vail~~d----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
.++-|..-.-+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++...
T Consensus 52 ~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 52 LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp --------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3344433345689998865 456777888999999999998765542 222344555778888889999999765
Q ss_pred hHHHHHHHHHHHHcCC
Q 037761 162 TALASRLFALVAKNGM 177 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~ 177 (753)
......+...+.+.|+
T Consensus 129 ~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SSCHHHHHHHHHHCSS
T ss_pred CCChHHHHHHHHcCCC
Confidence 4333445556666664
No 280
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=65.15 E-value=13 Score=38.69 Aligned_cols=83 Identities=8% Similarity=0.195 Sum_probs=56.1
Q ss_pred HHHHHHHcCCeEEEEEEeeCCccc-chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-
Q 037761 86 ISAVLQNFSWHEVVLMYEDTNYGA-GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA- 163 (753)
Q Consensus 86 ~~~~l~~~~w~~vail~~d~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~- 163 (753)
+.++++ +| +++.||+++..... +..+.+.+.++ |+++.......++.+.......+..+++.++|+||-.|-+.
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 445556 67 89988885543332 35677777776 77654443344445567788888888889999999887654
Q ss_pred -HHHHHHHHH
Q 037761 164 -LASRLFALV 172 (753)
Q Consensus 164 -~~~~~~~~a 172 (753)
|+..++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 666666554
No 281
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=65.13 E-value=16 Score=33.08 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=48.7
Q ss_pred CCeEEEEEEeeCCc----ccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 94 SWHEVVLMYEDTNY----GAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 94 ~w~~vail~~d~~~----g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
.-.+++||...|+- -......+...+++.|.++.....++++ ..++...+.+..+.++|+|+..+-
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD--EVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC--HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCC
Confidence 34678888875542 2445678888999999999888877754 557777777765567899998864
No 282
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=64.63 E-value=13 Score=37.71 Aligned_cols=81 Identities=11% Similarity=0.216 Sum_probs=57.4
Q ss_pred CCeEEEEEEee--C-CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc--CCccEEEEEeChHHHHHH
Q 037761 94 SWHEVVLMYED--T-NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST--MQTRVFIVHMNTALASRL 168 (753)
Q Consensus 94 ~w~~vail~~d--~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIi~~~~~~~~~~~ 168 (753)
+-.+|+++..+ + +|.....+.+.+++++.|..+..... ..+.......+..+.+ .++|.|++.........+
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~ 78 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQI 78 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHH
Confidence 34688999874 2 67788899999999999998876532 2233444556777666 599999998754556667
Q ss_pred HHHHHHcCC
Q 037761 169 FALVAKNGM 177 (753)
Q Consensus 169 ~~~a~~~g~ 177 (753)
++.+.+.|+
T Consensus 79 ~~~~~~~gi 87 (350)
T 3h75_A 79 LRLSQGSGI 87 (350)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHhCCC
Confidence 777777674
No 283
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=64.61 E-value=24 Score=31.77 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=49.0
Q ss_pred cCCeEEEEEEeeCC----------cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC-CccEEEEEeC
Q 037761 93 FSWHEVVLMYEDTN----------YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM-QTRVFIVHMN 161 (753)
Q Consensus 93 ~~w~~vail~~d~~----------~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIi~~~~ 161 (753)
+.--+++||...|+ .-......+...+++.|.++.....++++ ..++...+.+..+. ++|+|+..+-
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 44568999987652 22455677888999999999888777754 55777788776654 5899998864
No 284
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=64.31 E-value=6.3 Score=37.63 Aligned_cols=74 Identities=12% Similarity=-0.028 Sum_probs=47.0
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccc---eeeeccccccc
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRT---DYVEFTLPYSE 485 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~---~~~~fs~p~~~ 485 (753)
|+.-+|+..+.+ +.|.++++.+. ....++.++.+|.+|+.+..-....+.. ....--.++..
T Consensus 19 ~ll~eL~~~Fek----~~gv~V~~~~~-----------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~ 83 (242)
T 3kn3_A 19 GLLDVLAPAYKK----DTGVDLKWVAV-----------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMY 83 (242)
T ss_dssp THHHHHHHHHHH----HHSCEEEEEEE-----------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEEC
T ss_pred hHHHHHHHHHHH----HhCCeEEEEEc-----------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEc
Confidence 344445555544 88865555544 4578999999999999975433222221 00112357888
Q ss_pred cceEEEEecccC
Q 037761 486 SGVTMLVPVKRD 497 (753)
Q Consensus 486 ~~~~~~v~~~~~ 497 (753)
..+++++|+.++
T Consensus 84 N~LVLV~P~~~P 95 (242)
T 3kn3_A 84 NDFVIIGNPSFK 95 (242)
T ss_dssp SCEEEEECTHHH
T ss_pred ceEEEEEeCCCc
Confidence 999999998754
No 285
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=63.90 E-value=14 Score=38.97 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA- 163 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~- 163 (753)
.+.++++.+|.+++.||++...+. ...+.+.+.+++.|+.+.+ ..+....+...+......+++ ++|+||-.|-+.
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 355677777866998888655443 4678889999999988743 223333334466666666677 999999887654
Q ss_pred -HHHHHHH
Q 037761 164 -LASRLFA 170 (753)
Q Consensus 164 -~~~~~~~ 170 (753)
|+..++.
T Consensus 158 iD~AK~iA 165 (450)
T 1ta9_A 158 MDSAKYIA 165 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6666665
No 286
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=63.85 E-value=18 Score=34.96 Aligned_cols=78 Identities=6% Similarity=0.028 Sum_probs=57.9
Q ss_pred CeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHH
Q 037761 95 WHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALV 172 (753)
Q Consensus 95 w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a 172 (753)
-+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++..... ...++.+
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA---NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC---TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 3578888864 457788889999999999998876532 22244556678888888999999987665 5567777
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 77664
No 287
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=63.01 E-value=43 Score=31.14 Aligned_cols=89 Identities=6% Similarity=-0.020 Sum_probs=60.1
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEE--EeChH----HHHHHH
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIV--HMNTA----LASRLF 169 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~--~~~~~----~~~~~~ 169 (753)
.+|.+.....+.-.-....+...++.+|.++.+--. . ......+..+++.+||+|.+ .+... .+..++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---~---vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV---D---VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS---S---CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC---C---CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 356555555666566677788889999999865432 1 13445667777789999999 65432 467788
Q ss_pred HHHHHcCCCCCCEEEEEcCcc
Q 037761 170 ALVAKNGMMSKGYTWIVTACL 190 (753)
Q Consensus 170 ~~a~~~g~~~~~~~wi~~~~~ 190 (753)
.++++.|+...-.+|+++...
T Consensus 167 ~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp HHHHHTTCGGGSEEEEESSSC
T ss_pred HHHHHcCCCCCCEEEEECCCC
Confidence 888888864344577776543
No 288
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=61.84 E-value=22 Score=31.45 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=47.2
Q ss_pred eEEEEEEeeCC--cc---cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC-CccEEEEEeC
Q 037761 96 HEVVLMYEDTN--YG---AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM-QTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIi~~~~ 161 (753)
-+++||...|+ .| ......+...+++.|.++.....++++ ...+...+.+..+. ++|+|+..+-
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 36788876554 12 345678889999999999888777754 55788888877654 7899998865
No 289
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=61.80 E-value=12 Score=36.76 Aligned_cols=80 Identities=6% Similarity=0.018 Sum_probs=57.7
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a 172 (753)
++++++..+ ++|.....+.+.+.+++.|..+..... ...+.......++.+.+.++|.|++..... .....++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGA--AQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEEC--SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCC--CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 578888864 567788889999999999998875321 122345666777888888999999876533 345577788
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 290
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=61.54 E-value=17 Score=35.51 Aligned_cols=81 Identities=7% Similarity=0.119 Sum_probs=57.9
Q ss_pred CCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHH
Q 037761 94 SWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFA 170 (753)
Q Consensus 94 ~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~ 170 (753)
.-++|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++..... .....++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 34678888864 557778889999999999998876533 22344556778888888999999886543 3346677
Q ss_pred HHHHcCC
Q 037761 171 LVAKNGM 177 (753)
Q Consensus 171 ~a~~~g~ 177 (753)
.+.+.|+
T Consensus 84 ~~~~~~i 90 (293)
T 3l6u_A 84 EAKKAGI 90 (293)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 7877775
No 291
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=61.47 E-value=23 Score=34.51 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=58.1
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH----HHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA----LASRLF 169 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~----~~~~~~ 169 (753)
+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST---NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999874 567888899999999999998876533 12344556678888888999999876532 234567
Q ss_pred HHHHHcCC
Q 037761 170 ALVAKNGM 177 (753)
Q Consensus 170 ~~a~~~g~ 177 (753)
+.+.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 77777775
No 292
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.84 E-value=60 Score=25.65 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=66.1
Q ss_pred eEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc-
Q 037761 72 FIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST- 150 (753)
Q Consensus 72 ~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~- 150 (753)
+|-...++...-..++.-+++.|. ++.++|+|.+- .....-..++++.|+.+-..+ +..||+..+..|-.
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde--krrrerleefekqgvdvrtve------dkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KRRRERLEEFEKQGVDVRTVE------DKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HHHHHHHHHHHTTTCEEEECC------SHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HHHHHHHHHHHHcCCceeeec------cHHHHHHHHHHHHHh
Confidence 455667777888888888888784 77789987653 222333456888998875442 25688888877753
Q ss_pred -CCccEEEEEe-C-hHHHHHHHHHHHHcCC
Q 037761 151 -MQTRVFIVHM-N-TALASRLFALVAKNGM 177 (753)
Q Consensus 151 -~~~~vIi~~~-~-~~~~~~~~~~a~~~g~ 177 (753)
..-|++++.. . .+=...|+.+|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 3446655543 3 4456679999999885
No 293
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=60.67 E-value=27 Score=33.51 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEee
Q 037761 17 ILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISF 57 (753)
Q Consensus 17 ~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~ 57 (753)
+.++.|. +.++.+|+-+.++..+.++..+-+..++|+|..
T Consensus 53 ~~~~~L~-~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigi 92 (255)
T 2jfz_A 53 EALDFFK-PHEIELLIVACNTASALALEEMQKYSKIPIVGV 92 (255)
T ss_dssp HHHHHHG-GGCCSCEEECCHHHHHHTHHHHHHHCSSCEECS
T ss_pred HHHHHHH-HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 3444444 459999998766665556777777889999984
No 294
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=60.60 E-value=4.2 Score=39.76 Aligned_cols=179 Identities=13% Similarity=0.059 Sum_probs=97.1
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+..+++..+.+ +.- ++++.+... +.+..|.+|++|+++........ .+. ..+.....+
T Consensus 104 ~~l~~~l~~f~~----~~P-~v~i~~~~~------------~~~~~l~~~~~Dl~i~~~~~~~~---~l~-~~~l~~~~~ 162 (291)
T 3szp_A 104 RMMMPMFNAFME----KYP-DIHIELMMS------------NQADDLDPTEWDVIFRVGPQRDS---SLI-ARKIGEVKD 162 (291)
T ss_dssp HHTHHHHHHHHH----HCT-TEEEEEEEE------------CSCSCCCGGGCSEEEEESCCCCT---TCE-EEEEEEECE
T ss_pred HHHHHHHHHHHH----HCC-CeEEEEEEe------------cCccCccccCceEEEEecCCCCC---Cee-EEEecccce
Confidence 445677777777 653 355555532 11357889999999864432222 222 356778888
Q ss_pred EEEEecccCCCCceeEEEecCccccceeeccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC
Q 037761 489 TMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES 568 (753)
Q Consensus 489 ~~~v~~~~~~~~~~~~~~~PF~~~~W~~ip~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~ 568 (753)
+++++...... ....-+++||. +
T Consensus 163 ~~v~~~~~~~~-------------------------------------------------------~~~~~~~~~L~--~ 185 (291)
T 3szp_A 163 ILVASPQYLSS-------------------------------------------------------HPQPTHAEELH--Q 185 (291)
T ss_dssp EEEECHHHHHH-------------------------------------------------------SCCCSSGGGGG--G
T ss_pred EEEECHHHHHh-------------------------------------------------------cCCCCCHHHHh--c
Confidence 88888654210 11245788885 4
Q ss_pred CeEEEecCchHHHHHHH---hhCCCCCceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc--c
Q 037761 569 HFVGFQSGSFVEDFLVK---QLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP--I 643 (753)
Q Consensus 569 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~--~ 643 (753)
.++....+.....+... ............++.......+..|. .-+++ +........... .+..+.. .
T Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Giail-p~~~~~~~~~~~--~l~~~~~~~~ 258 (291)
T 3szp_A 186 HQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGL----GITLM-PDVMLREFLEDG--SLVQVLSDWS 258 (291)
T ss_dssp SCEEEETTBCSEEEECTTSCEEEECCCCSEEESSHHHHHHHHHTTC----CEEEE-EGGGTHHHHHTT--TSEECCTTCB
T ss_pred CCeeecCCCCceeEEcCCCceeEEeccCceEECcHHHHHHHHHcCC----cEEEc-cHHHHHHHHhCC--CeEEecCCcc
Confidence 43433222111111110 01111123345677888899999997 55555 444444444332 3444432 2
Q ss_pred cccCceEEEEcCCCCCchHhHHHHHHhhh
Q 037761 644 YRTDGLGFAFAKDSPLVSHFSQAILLVRE 672 (753)
Q Consensus 644 ~~~~~~~~~~~k~s~l~~~~n~~i~~l~~ 672 (753)
.....++++.+++.+........+..+++
T Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 287 (291)
T 3szp_A 259 SNPRDIYMLYNHKDHQPEKVRLFIDFVIG 287 (291)
T ss_dssp CCCEEEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHHHH
Confidence 23456777888887776666666665554
No 295
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=60.18 E-value=66 Score=29.36 Aligned_cols=71 Identities=8% Similarity=0.006 Sum_probs=42.4
Q ss_pred ecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcc--cccCceEEEEcCCCCCchHhHHHHHHhhh
Q 037761 595 RPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPI--YRTDGLGFAFAKDSPLVSHFSQAILLVRE 672 (753)
Q Consensus 595 ~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~s~l~~~~n~~i~~l~~ 672 (753)
..+++.....+++..|. .-+++... .....++. +++..+... .....+.++.+++..+.......+..+.+
T Consensus 140 ~~~~~~~~~~~~v~~G~----Gia~lp~~-~~~~~l~~--g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 212 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEK----GLALLPDF-MAQFSILR--GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLKD 212 (218)
T ss_dssp BCCSSHHHHHHHHHTTC----CBEEEEHH-HHHHHHHT--TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCC----CEEEecHH-HHHHHHHC--CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHHH
Confidence 45678888999999997 65555543 33333333 245443221 22345777778887777777666665543
No 296
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=59.59 E-value=57 Score=24.97 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=53.3
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS 149 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 149 (753)
.+-.|+..++...-..+-++++.|+.+-+.++.+|.+|.... -.|.+.+.+.-..+.+. .+...+...-..++
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkewaeka-irfvkslgaqvliiiyd------qdqnrleefsrevr 98 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKA-IRFVKSLGAQVLIIIYD------QDQNRLEEFSREVR 98 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHH-HHHHHHHCCCCEEEEEC------SCHHHHHHHHHHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHH-HHHHHhcCCeEEEEEEe------CchhHHHHHHHHHH
Confidence 456778888777777777788888877776666666554332 23444444433333222 12334444445555
Q ss_pred cCCccEEEEEeChHHHHH-HHHHHHHcC
Q 037761 150 TMQTRVFIVHMNTALASR-LFALVAKNG 176 (753)
Q Consensus 150 ~~~~~vIi~~~~~~~~~~-~~~~a~~~g 176 (753)
..+-.+--+ .++++... +-+-.++.|
T Consensus 99 rrgfevrtv-tspddfkkslerlirevg 125 (134)
T 2l69_A 99 RRGFEVRTV-TSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HTTCCEEEE-SSHHHHHHHHHHHHHHHC
T ss_pred hcCceEEEe-cChHHHHHHHHHHHHHhc
Confidence 556554333 34444443 333444444
No 297
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=59.05 E-value=1.4e+02 Score=29.34 Aligned_cols=144 Identities=7% Similarity=-0.083 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHhcCCeEEE-EcCCCCCc--HHHHHHhhccC-CccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761 11 KDCGKLILAVDLLKKFQVQAI-IGPQIPAA--APFLVELGEKA-QVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI 86 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~av-iG~~~s~~--~~av~~i~~~~-~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~ 86 (753)
-+..+...+.++++. ++.++ +-...-.. ...+...+... ++.+|.+.+-- +-... ....-..|.
T Consensus 80 P~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~G--ii~p~-~~~~~~~~~-------- 147 (305)
T 2fp4_A 80 PPPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPG--VINPG-ECKIGIMPG-------- 147 (305)
T ss_dssp CHHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCE--EEETT-TEEEESSCG--------
T ss_pred CHHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCe--Eeccc-ccceeeccc--------
Confidence 356677777777776 77763 33333223 33788888999 99999876522 21100 011111221
Q ss_pred HHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCC-chhhHHHHHHHHh-cCCccEEEEEeCh--
Q 037761 87 SAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSA-EDFQISKELSKLS-TMQTRVFIVHMNT-- 162 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~-~~~~~vIi~~~~~-- 162 (753)
..+.--+|+++.+.... ...+...+.+.|+-+.....+-... .+.++...|..+. +...++|++++..
T Consensus 148 ----~~~~~G~va~vSqSG~l----~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g 219 (305)
T 2fp4_A 148 ----HIHKKGRIGIVSRSGTL----TYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGG 219 (305)
T ss_dssp ----GGCCEEEEEEEESCSHH----HHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSS
T ss_pred ----cCCCCCCEEEEecchHH----HHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCC
Confidence 12334679999976653 3455566777777776666665332 1467888888876 4678999999874
Q ss_pred ---HHHHHHHHHHHH
Q 037761 163 ---ALASRLFALVAK 174 (753)
Q Consensus 163 ---~~~~~~~~~a~~ 174 (753)
.+++.|++.+++
T Consensus 220 ~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 220 NAEENAAEFLKQHNS 234 (305)
T ss_dssp SHHHHHHHHHHHHSC
T ss_pred chhhHHHHHHHHHHH
Confidence 468899987754
No 298
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=58.59 E-value=21 Score=35.50 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=57.9
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a 172 (753)
++|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++..... .....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888874 567888899999999999998765542 22344555677777778899999876543 445677788
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88774
No 299
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=58.09 E-value=29 Score=33.71 Aligned_cols=86 Identities=7% Similarity=-0.006 Sum_probs=52.8
Q ss_pred HHHHHcCCeEEEEEEee----CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH
Q 037761 88 AVLQNFSWHEVVLMYED----TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA 163 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~ 163 (753)
+-|..-.-.+|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++.....
T Consensus 12 r~L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 12 RNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -------CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECC---TTSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred HHhhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 33433344689998864 457778889999999999988765421 22334455677777778999999876532
Q ss_pred HHHHHHHHHHH-cCC
Q 037761 164 LASRLFALVAK-NGM 177 (753)
Q Consensus 164 ~~~~~~~~a~~-~g~ 177 (753)
.. ..+..+.+ .|+
T Consensus 89 ~~-~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV-DEIDDIIDAHSQ 102 (296)
T ss_dssp CH-HHHHHHHHTCSS
T ss_pred Ch-HHHHHHHhcCCC
Confidence 21 34455666 564
No 300
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=57.75 E-value=10 Score=36.50 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=56.6
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~ 173 (753)
+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++..........++.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 578888864 457788889999999999998876532 223445566778888889999998765422344666777
Q ss_pred HcCC
Q 037761 174 KNGM 177 (753)
Q Consensus 174 ~~g~ 177 (753)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7775
No 301
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=56.85 E-value=22 Score=34.56 Aligned_cols=79 Identities=5% Similarity=0.021 Sum_probs=54.5
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a 172 (753)
++|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++..... .....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 478888864 567788889999999999988765432 22233445667777778999999876433 233456667
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 302
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=56.51 E-value=19 Score=34.21 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=27.2
Q ss_pred hHHHHHH-HHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEE
Q 037761 412 MEIFNAT-LEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVV 464 (753)
Q Consensus 412 ~dll~~i-a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~ 464 (753)
.++++.+ ...++ +.|++++++... .+...-.+|.+|++|+-.
T Consensus 13 ~~il~~~~k~~l~-k~Gi~leiv~F~----------Dy~~pN~AL~~G~iDaN~ 55 (245)
T 3ir1_A 13 GDMVKEQIQPELE-KKGYTVKLVEFT----------DYVRPNLALAEGELDINV 55 (245)
T ss_dssp HHHHHHTHHHHHH-TTTCEEEEEEES----------SSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHHHHHHHH-HcCceEEEEEeC----------CcHhHHHHHHCCCcCeec
Confidence 4555542 23222 678655554443 678899999999999875
No 303
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=56.27 E-value=29 Score=33.89 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=54.8
Q ss_pred eEEEEEEe--eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHH
Q 037761 96 HEVVLMYE--DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALV 172 (753)
Q Consensus 96 ~~vail~~--d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a 172 (753)
.+|+++.. +++|.....+.+.+.+++.|.++.... +...+.......+..+.+.++|.|++..... .....++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 57888875 355778888999999999998875432 1122334455677777778899998876533 334566777
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 304
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=55.75 E-value=22 Score=34.54 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=42.4
Q ss_pred ceecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCc--ccccCceEEEEcCCCCCchHhHHHHHHh
Q 037761 593 QTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGP--IYRTDGLGFAFAKDSPLVSHFSQAILLV 670 (753)
Q Consensus 593 ~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~s~l~~~~n~~i~~l 670 (753)
.....++.......+..|. .-+++ +........... .+..+.. ......++++.+++.+........+..+
T Consensus 215 ~~~~~~~~~~~~~~v~~g~----Gi~~l-p~~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 287 (300)
T 3mz1_A 215 YTMAANESTTYLAAARAGL----GVIQA-PLFMVREDLRNG--TMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 287 (300)
T ss_dssp EEEEESSHHHHHHHHHTTC----CBEEE-EHHHHHHHHHHT--SEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHhCC----CEEec-cHHHHHHHHhCC--CeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHHHH
Confidence 3445678888999999997 55544 433343333332 3444433 2344467778888876666665555554
Q ss_pred h
Q 037761 671 R 671 (753)
Q Consensus 671 ~ 671 (753)
.
T Consensus 288 ~ 288 (300)
T 3mz1_A 288 V 288 (300)
T ss_dssp H
T ss_pred H
Confidence 4
No 305
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=55.64 E-value=27 Score=31.31 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=44.7
Q ss_pred EEEEEEeeCCc-------c---cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh-cCCccEEEEEeC
Q 037761 97 EVVLMYEDTNY-------G---AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS-TMQTRVFIVHMN 161 (753)
Q Consensus 97 ~vail~~d~~~-------g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vIi~~~~ 161 (753)
+++||...|.- | ......+.+.+++.|.++.....++++ ...+...+.... ..++|+|+..+-
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 78888764421 1 234567899999999999888888754 456676776654 357899998864
No 306
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=54.95 E-value=22 Score=31.67 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=43.5
Q ss_pred eEEEEEEeeCCc--c---cchHHHHHHH----HHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 96 HEVVLMYEDTNY--G---AGFISFLVDE----LQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d~~~--g---~~~~~~~~~~----~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
.+++||...|+- | ......+.+. +++.|.++.....++++ ..++...+.+..+.++|+|+..+-
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCC
Confidence 377888765542 2 3345678888 89999998887777754 557778888776656899998864
No 307
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=53.88 E-value=1.5 Score=35.66 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=31.6
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEee
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVD 552 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~ 552 (753)
|.+..+|++.+.|+++++.+.+...+.+.+.++..
T Consensus 62 P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 62 PVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp CCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876543
No 308
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=53.87 E-value=33 Score=33.54 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=57.6
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh-HHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT-ALASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~-~~~~~~~~~a 172 (753)
.+|+++..+ ++|.....+.+.+++++.|..+..... . +.......++.+.+.++|.|++.... ......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 468888864 567788889999999999988865533 1 34556677888888899999988753 3445567778
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88774
No 309
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.36 E-value=32 Score=34.47 Aligned_cols=86 Identities=6% Similarity=-0.013 Sum_probs=55.6
Q ss_pred HHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHH
Q 037761 88 AVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALA 165 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~ 165 (753)
+-+..-.-+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++.......
T Consensus 55 ~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 55 STLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS---HYDAGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp --------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred HhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 33333344679988864 567788899999999999988765432 2234455667788888899999988653322
Q ss_pred HHHHHHHHHcCC
Q 037761 166 SRLFALVAKNGM 177 (753)
Q Consensus 166 ~~~~~~a~~~g~ 177 (753)
..+..+.+.|+
T Consensus 132 -~~~~~l~~~~i 142 (339)
T 3h5o_A 132 -PFERILSQHAL 142 (339)
T ss_dssp -THHHHHHHTTC
T ss_pred -HHHHHHhcCCC
Confidence 45566667664
No 310
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=53.35 E-value=26 Score=34.06 Aligned_cols=76 Identities=5% Similarity=-0.014 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccceEEE
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTML 491 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~ 491 (753)
..+++.+++..+++.. .+++.+... .....+.++.+|.+|++..+-.++.+..+.-.-..|+..+..+++
T Consensus 48 ~p~~~~~a~~f~~~~p-~v~v~~~~~---------GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vi 117 (279)
T 4gd5_A 48 GPVMEAEAEAFKTKKP-DVSIEINQI---------GSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALI 117 (279)
T ss_dssp HHHHHHHHHHHHHHST-TCEEEEEEC---------CHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCC-CceEEEeeC---------CcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeee
Confidence 4678888886665542 355555543 457789999999999997665554432222122357788889999
Q ss_pred EecccC
Q 037761 492 VPVKRD 497 (753)
Q Consensus 492 v~~~~~ 497 (753)
+++.+.
T Consensus 118 vn~~n~ 123 (279)
T 4gd5_A 118 THKNNP 123 (279)
T ss_dssp EETTCS
T ss_pred eccCCc
Confidence 987754
No 311
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=53.07 E-value=32 Score=33.68 Aligned_cols=79 Identities=4% Similarity=0.060 Sum_probs=54.3
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCe-EEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDI-RISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFAL 171 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~ 171 (753)
++|+++..+ +.|.....+.+.+.+++.|. .+..... ..+.......+..+.+.++|.|++..... .....+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 578888853 55777888999999999996 7755432 12234455677777788999999876433 23456677
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 777664
No 312
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=52.92 E-value=24 Score=34.29 Aligned_cols=80 Identities=8% Similarity=0.039 Sum_probs=55.6
Q ss_pred CCeEEEEEEee-------CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHH
Q 037761 94 SWHEVVLMYED-------TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALAS 166 (753)
Q Consensus 94 ~w~~vail~~d-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~ 166 (753)
.-+.|+++..+ +.|.....+.+.+.+++.|..+.... ...+.......+..+.+.++|.|++...... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMST---GETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECC---CCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 44678888866 55777888999999999998876532 1222344556777788889999998754332 2
Q ss_pred HHHHHHHHcCC
Q 037761 167 RLFALVAKNGM 177 (753)
Q Consensus 167 ~~~~~a~~~g~ 177 (753)
..++.+.+.|+
T Consensus 83 ~~~~~l~~~~i 93 (292)
T 3k4h_A 83 RIIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 45666777775
No 313
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=52.75 E-value=72 Score=30.29 Aligned_cols=71 Identities=4% Similarity=0.044 Sum_probs=35.6
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhCCeE--EEEeeccCC-------CC--chhhHHHHHHHH-hcCCccEEEEEeC-h
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQENDIR--ISHMSKIPT-------SA--EDFQISKELSKL-STMQTRVFIVHMN-T 162 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~g~~--v~~~~~~~~-------~~--~~~d~~~~l~~l-~~~~~~vIi~~~~-~ 162 (753)
++|+||...... ...+++.+++.|.. +........ .. ....+.....++ ++.++|+|++.|. .
T Consensus 110 ~rigVlaT~~t~----~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~ 185 (245)
T 3qvl_A 110 TRFSIVTTLPRT----LIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGM 185 (245)
T ss_dssp SCEEEEESCGGG----HHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGG
T ss_pred CEEEEEEcchhH----HHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 799999976543 35566666665532 221111110 10 112333333343 3478999998765 4
Q ss_pred HHHHHHHH
Q 037761 163 ALASRLFA 170 (753)
Q Consensus 163 ~~~~~~~~ 170 (753)
+.....++
T Consensus 186 p~l~~~i~ 193 (245)
T 3qvl_A 186 ATLAQQLT 193 (245)
T ss_dssp GGGHHHHH
T ss_pred HHHHHHHH
Confidence 43333343
No 314
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=52.61 E-value=58 Score=31.01 Aligned_cols=94 Identities=9% Similarity=-0.021 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEee------------CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc
Q 037761 83 VKAISAVLQNFSWHEVVLMYED------------TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST 150 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d------------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~ 150 (753)
....++.+...|.+.|-+.... ........+.+++.+++.|+.+........ ....++...+...+.
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~ 102 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKA 102 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHH
Confidence 3566777888899988876532 122344578899999999999877665442 345578888888888
Q ss_pred CCccEEEEEeChHHHHHHHHHHHHcCC
Q 037761 151 MQTRVFIVHMNTALASRLFALVAKNGM 177 (753)
Q Consensus 151 ~~~~vIi~~~~~~~~~~~~~~a~~~g~ 177 (753)
-+++.|++....+....+...|.+.|+
T Consensus 103 lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 103 MDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred cCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 899988887655566667777777775
No 315
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=52.26 E-value=37 Score=34.06 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=17.5
Q ss_pred ChHHHHHHHHcCcccEEEe
Q 037761 447 TYDELLYQIKLKKFDAVVG 465 (753)
Q Consensus 447 ~~~~~~~~l~~~~~Di~~~ 465 (753)
++.+++++|++|++|++.-
T Consensus 42 ~~~~ci~aI~~g~AD~~~l 60 (334)
T 1h45_A 42 SPIQCIQAIAENRADAVTL 60 (334)
T ss_dssp SHHHHHHHHHTTSCCBEEE
T ss_pred CHHHHHHHHHcCCCCEEEe
Confidence 7999999999999999863
No 316
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=51.20 E-value=48 Score=32.90 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=47.4
Q ss_pred eEEEEEEe----eC-CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 96 HEVVLMYE----DT-NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 96 ~~vail~~----d~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
.+|++++. ++ .|.....+.+.+.+++.|..+...+.. . ..+....+..+.+.++|.|++.+..
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~--~--~~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAS--T--DAEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECC--S--GGGHHHHHHHHHHTTCSEEEEESTT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCC--C--HHHHHHHHHHHHHcCCCEEEECChh
Confidence 57899985 23 577777888999999999988766542 2 3456677888888899999998643
No 317
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=50.51 E-value=18 Score=35.61 Aligned_cols=87 Identities=6% Similarity=0.002 Sum_probs=55.6
Q ss_pred HHHHHHcCCeEEEEEEee-------CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEE
Q 037761 87 SAVLQNFSWHEVVLMYED-------TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVH 159 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~ 159 (753)
++-|+.-.-+.|+++..+ +.|.....+.+.+.+++.|..+.... ...+.......+..+.+.++|.|++.
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTV---SENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECC---CSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 344444455789999876 45677788899999999998876532 12223344567778888899999987
Q ss_pred eChHHHHHHHHHHHHcCC
Q 037761 160 MNTALASRLFALVAKNGM 177 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~g~ 177 (753)
..... ...+..+.+.|+
T Consensus 91 ~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SCBTT-CHHHHHHHHTTC
T ss_pred CCcCC-cHHHHHHHHcCC
Confidence 64332 245666777774
No 318
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=50.49 E-value=41 Score=34.42 Aligned_cols=96 Identities=8% Similarity=0.058 Sum_probs=61.4
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCC---eEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHH
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSW---HEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELS 146 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w---~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~ 146 (753)
|.-+.+.+... ..+.++++.++. +++.||++...... .+.+.+++.|+.+.....+..+.+.......+.
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~ 100 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTA 100 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHH
Confidence 34444555432 235667777653 77778885443322 366777777776654445555666778888888
Q ss_pred HHhcCC---ccEEEEEeChH--HHHHHHHHH
Q 037761 147 KLSTMQ---TRVFIVHMNTA--LASRLFALV 172 (753)
Q Consensus 147 ~l~~~~---~~vIi~~~~~~--~~~~~~~~a 172 (753)
.+++.+ +|+|+-.|-+. |+..++...
T Consensus 101 ~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 101 QVKAFNTKLPVSVVGLGGGSTMDLAKAVSLM 131 (375)
T ss_dssp HHHHHCSSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 888766 99999988765 566666443
No 319
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=50.46 E-value=34 Score=30.49 Aligned_cols=62 Identities=6% Similarity=0.019 Sum_probs=40.6
Q ss_pred eEEEEEEeeCCc--c---cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 96 HEVVLMYEDTNY--G---AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 96 ~~vail~~d~~~--g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
-+++||...|+- | ......+.+.+++.|+++.....++++ ...+...+.+..+. +|+|+..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD--LDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHH-CSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhc-CCEEEEcC
Confidence 467777765441 2 345667788888888888777777644 45666666665432 68777765
No 320
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=50.20 E-value=17 Score=36.09 Aligned_cols=80 Identities=8% Similarity=0.006 Sum_probs=54.7
Q ss_pred eEEEEEEe--eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHH
Q 037761 96 HEVVLMYE--DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALV 172 (753)
Q Consensus 96 ~~vail~~--d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a 172 (753)
++|+++.. +++|.....+.+++.+++.|.++.... +...+.......++.+.+.++|.|++..... .....++.+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57888875 355777788899999999998775431 1122334555677787788999988876433 334567778
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 77774
No 321
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=50.01 E-value=26 Score=34.45 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=54.4
Q ss_pred HHHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHH
Q 037761 87 SAVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTAL 164 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~ 164 (753)
++-|+.-.-+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.||+......
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI---DAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC---CSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 344443344678888864 557788899999999999988765432 122345566788888899999999865433
Q ss_pred HHHHHHHHHHcCC
Q 037761 165 ASRLFALVAKNGM 177 (753)
Q Consensus 165 ~~~~~~~a~~~g~ 177 (753)
....+..+.+ |+
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2215556666 64
No 322
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=49.44 E-value=38 Score=34.19 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=54.8
Q ss_pred HHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHH
Q 037761 88 AVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALA 165 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~ 165 (753)
+-|..-.-+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++......
T Consensus 63 ~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~- 138 (355)
T 3e3m_A 63 GSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT---AYSPEREEQLVETMLRRRPEAMVLSYDGHT- 138 (355)
T ss_dssp --------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEECSCCC-
T ss_pred HhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 33433334579998864 456677888999999999998865532 122445556777788889999999865432
Q ss_pred HHHHHHHHHcCC
Q 037761 166 SRLFALVAKNGM 177 (753)
Q Consensus 166 ~~~~~~a~~~g~ 177 (753)
...+..+.+.|+
T Consensus 139 ~~~~~~l~~~~i 150 (355)
T 3e3m_A 139 EQTIRLLQRASI 150 (355)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHhCCC
Confidence 245666777674
No 323
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=49.43 E-value=22 Score=34.18 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=55.5
Q ss_pred EEEEEEe--eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCC-ccEEEEEeC-hHHHHHHHHHH
Q 037761 97 EVVLMYE--DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQ-TRVFIVHMN-TALASRLFALV 172 (753)
Q Consensus 97 ~vail~~--d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIi~~~~-~~~~~~~~~~a 172 (753)
+|+++.. +++|.....+.+.+.+++.|..+.....-. ..+.......+..+.+.+ +|.|++... .......++.+
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 5777775 456778889999999999998876553211 222344556777777777 999998874 33445567778
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 78775
No 324
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=49.32 E-value=28 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=23.4
Q ss_pred hcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeee
Q 037761 425 KLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDIS 468 (753)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~ 468 (753)
.+|+++++.. . +..-+..+|.+|++|+......
T Consensus 190 ~~Gy~Ve~~~--~---------~~~~~~~al~~G~iD~~~e~w~ 222 (268)
T 2b4l_A 190 DLGYEVTLTQ--V---------EAGPMWTAIATGSADASLSAWL 222 (268)
T ss_dssp HHTCEEEEEE--C---------CTTHHHHHHHHTSSSEEEEEEE
T ss_pred HcCCceEEEE--C---------ChHHHHHHHHCCCCeEEehhhc
Confidence 7897655544 3 2367788999999999865543
No 325
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=48.98 E-value=52 Score=33.34 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=55.5
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCC-eEEEEeeccCCCCchhhHHHHHHHH
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQEND-IRISHMSKIPTSAEDFQISKELSKL 148 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~d~~~~l~~l 148 (753)
|+-....+..-. .+.++++.+ +++.||++...+.. ..+.+.+.+ +.| +.+........+.+.......+..+
T Consensus 11 ~~~i~~G~g~l~---~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~ 83 (354)
T 1xah_A 11 NYPIYVEHGAIK---YIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYI 83 (354)
T ss_dssp CCEEEEETTGGG---HHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHH
T ss_pred CccEEEcCChHH---HHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHH
Confidence 555556655332 244555555 78888886544333 566777777 667 3322221122233456777788888
Q ss_pred hcCCc---cEEEEEeChH--HHHHHHHHHHHcC
Q 037761 149 STMQT---RVFIVHMNTA--LASRLFALVAKNG 176 (753)
Q Consensus 149 ~~~~~---~vIi~~~~~~--~~~~~~~~a~~~g 176 (753)
++.++ |+|+..|.+. |+..++......|
T Consensus 84 ~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rg 116 (354)
T 1xah_A 84 LSHHVTRNTAIIAVGGGATGDFAGFVAATLLRG 116 (354)
T ss_dssp HTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTC
T ss_pred HHcCCCCCceEEEECChHHHHHHHHHHHHhccC
Confidence 88888 8999887654 6777776544433
No 326
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=48.53 E-value=46 Score=34.16 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=63.8
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCC---CCchhhHHHHHH
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPT---SAEDFQISKELS 146 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~---~~~~~d~~~~l~ 146 (753)
+|-....+..-.+. . +++..+.+++.||++...+.. ..+.+.+.+++.|+.+.... ++. +.+...+...+.
T Consensus 41 ~y~I~~G~g~l~~l---~-~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~ 114 (390)
T 3okf_A 41 SYPISIGAGLFANP---A-LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMS 114 (390)
T ss_dssp CEEEEEETTGGGCG---G-GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHH
T ss_pred CCCEEEeCCHHHhH---H-HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHH
Confidence 45455555533322 2 444557789988887665543 77889999999998764322 222 223456777778
Q ss_pred HHhcCCc---cEEEEEeChH--HHHHHHHHHHHcC
Q 037761 147 KLSTMQT---RVFIVHMNTA--LASRLFALVAKNG 176 (753)
Q Consensus 147 ~l~~~~~---~vIi~~~~~~--~~~~~~~~a~~~g 176 (753)
.+++.++ |+|+..|.+. |+..++......|
T Consensus 115 ~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg 149 (390)
T 3okf_A 115 FLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRG 149 (390)
T ss_dssp HHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTC
T ss_pred HHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCC
Confidence 8877766 6888887755 6666665544444
No 327
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=48.40 E-value=35 Score=33.19 Aligned_cols=78 Identities=9% Similarity=-0.027 Sum_probs=53.1
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~ 173 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++...... ...++.+.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS---DQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 578888864 557778889999999999988765422 222344556777787889999998764221 23455566
Q ss_pred HcCC
Q 037761 174 KNGM 177 (753)
Q Consensus 174 ~~g~ 177 (753)
+.|+
T Consensus 93 ~~~i 96 (289)
T 2fep_A 93 RSPV 96 (289)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 6664
No 328
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=48.32 E-value=20 Score=35.17 Aligned_cols=81 Identities=6% Similarity=0.006 Sum_probs=57.3
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh-HHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT-ALASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~-~~~~~~~~~a 172 (753)
.+|+++..+ ++|.....+.+.+++++.|..+.....-.. .+.......+..+.+.++|.|++.... ......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 467888764 568888899999999999998875542110 134456677888888899999987543 3335567778
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 87775
No 329
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=48.29 E-value=26 Score=34.22 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=54.1
Q ss_pred HHHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHH
Q 037761 87 SAVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTAL 164 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~ 164 (753)
++-|..-.-..|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++......
T Consensus 12 Ar~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 88 (293)
T 2iks_A 12 AAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPP 88 (293)
T ss_dssp ------CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCT
T ss_pred HHHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 333443344689998864 557778888999999999988765432 112334556777777889999998765322
Q ss_pred HHHHHHHHHHcCC
Q 037761 165 ASRLFALVAKNGM 177 (753)
Q Consensus 165 ~~~~~~~a~~~g~ 177 (753)
...++..+.+.|+
T Consensus 89 ~~~~~~~~~~~~i 101 (293)
T 2iks_A 89 EHPFYQRWANDPF 101 (293)
T ss_dssp TCHHHHTTTTSSS
T ss_pred cHHHHHHHHhCCC
Confidence 2234455555553
No 330
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=48.28 E-value=24 Score=31.27 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=45.6
Q ss_pred eEEEEEEeeCCc--c---cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 96 HEVVLMYEDTNY--G---AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d~~~--g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
.+++||...|+- | ......+...+++.|.++.....++++ ..+...+.+..+.++|+|+..+-
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd---~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG---SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS---HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH---HHHHHHHHHHHhCCCCEEEECCC
Confidence 578888875542 2 345677888999999998877777632 46777777765557899998864
No 331
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=48.15 E-value=19 Score=36.87 Aligned_cols=82 Identities=6% Similarity=0.034 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH
Q 037761 84 KAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA 163 (753)
Q Consensus 84 ~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~ 163 (753)
..+.++++.+|.+++.||++...++ ..+.+.+.++ . .+++.. +.++.+.......+..+++.++|+|+-.|-+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~-~~~f~~-v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--V-AIWHDE-VVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--C-SEEECC-CCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--C-CEEEcc-eecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 3467788888999998888655432 3344444444 1 223332 33344567788888888899999999988765
Q ss_pred --HHHHHHHH
Q 037761 164 --LASRLFAL 171 (753)
Q Consensus 164 --~~~~~~~~ 171 (753)
|+..++..
T Consensus 100 ~iD~aK~iA~ 109 (364)
T 3iv7_A 100 TIGLAKAIAM 109 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 55666543
No 332
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=47.83 E-value=38 Score=33.85 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=52.7
Q ss_pred eEEEEEEee---CCcccchHHHHHHHHHhCCeEEEEeeccCC-CCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHH
Q 037761 96 HEVVLMYED---TNYGAGFISFLVDELQENDIRISHMSKIPT-SAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFAL 171 (753)
Q Consensus 96 ~~vail~~d---~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~ 171 (753)
..|+++..+ ++|.....+.+.+.+++.|..+.....-.. ..+.......+..+.+.++|.|++..........++.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 478888865 567778888999999999976544321111 0123345567777777889999985443322345666
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 666664
No 333
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=47.76 E-value=49 Score=33.59 Aligned_cols=87 Identities=3% Similarity=0.035 Sum_probs=58.0
Q ss_pred CeEEEEEEee----CCcccchHHHHHHHHHhCC--eEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHH
Q 037761 95 WHEVVLMYED----TNYGAGFISFLVDELQEND--IRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRL 168 (753)
Q Consensus 95 w~~vail~~d----~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~ 168 (753)
-.+|++|+.+ ..|.....+.+.+..++.| +++.+.+..+. ..+....++.+.+.++|+|+..+..- ...+
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~---~~d~~~~l~~l~~~g~d~Ii~~g~~~-~~~~ 101 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAE---GADAERSIKRIARAGNKLIFTTSFGY-MDPT 101 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCT---THHHHHHHHHHHHTTCSEEEECSGGG-HHHH
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCC---HHHHHHHHHHHHHCCCCEEEECCHHH-HHHH
Confidence 3689999963 3576777888888888888 88777665432 34778889999889999888775432 2234
Q ss_pred HHHHHHcCCCCCCEEEEEcCc
Q 037761 169 FALVAKNGMMSKGYTWIVTAC 189 (753)
Q Consensus 169 ~~~a~~~g~~~~~~~wi~~~~ 189 (753)
.+.|.+. ++..++..+.
T Consensus 102 ~~vA~~~----Pdv~fv~id~ 118 (356)
T 3s99_A 102 VKVAKKF----PDVKFEHATG 118 (356)
T ss_dssp HHHHTTC----TTSEEEEESC
T ss_pred HHHHHHC----CCCEEEEEec
Confidence 4444442 3444454443
No 334
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=47.13 E-value=36 Score=31.42 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCeEEEEEEeeCC--cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 85 AISAVLQNFSWHEVVLMYEDTN--YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
.+.+++....-++|++|-.-.. -..+..+.+.+.+++.|.++....... .+..+..+.+.+ +|.|++.+ +
T Consensus 17 ~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~--~~~~~~~~~l~~-----ad~I~l~G-G 88 (206)
T 3l4e_A 17 LFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT--ESLGEITTKLRK-----NDFIYVTG-G 88 (206)
T ss_dssp HHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT--SCHHHHHHHHHH-----SSEEEECC-S
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CChHHHHHHHHh-----CCEEEECC-C
Confidence 3444555555689988874321 123577889999999998765442221 123344444432 68888876 3
Q ss_pred HHHHHHHHHHHHcCCC-------CCCEEEEEcCc
Q 037761 163 ALASRLFALVAKNGMM-------SKGYTWIVTAC 189 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~-------~~~~~wi~~~~ 189 (753)
. ...+++.+++.|+. ..+.++++++.
T Consensus 89 ~-~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 89 N-TFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp C-HHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred C-HHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 3 33566666665542 13456777654
No 335
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=46.74 E-value=92 Score=29.86 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=55.7
Q ss_pred eEEEEEEeeCCcccchHHHHHHH--------HHhC-CeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC-----
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDE--------LQEN-DIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN----- 161 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~--------~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~----- 161 (753)
.+|.+-....+.-.-....+... ++.+ |.++.+--. +.....++..+++.+||+|.+.+.
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~------~vp~e~iv~aa~e~~~d~VglS~l~t~~~ 194 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS------QVANEDFIKKAVELEADVLLVSQTVTQKN 194 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS------SBCHHHHHHHHHHTTCSEEEEECCCCTTS
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC------CCCHHHHHHHHHHcCCCEEEEEeecCCcc
Confidence 34544444445444455556655 8899 999865432 123445677777789999999874
Q ss_pred --hHHHHHHHHHHHHcCCCCCCEEEEEcCc
Q 037761 162 --TALASRLFALVAKNGMMSKGYTWIVTAC 189 (753)
Q Consensus 162 --~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 189 (753)
...+..++.++++.|+...-.+|+++..
T Consensus 195 ~~~~~~~~~i~~L~~~g~~~~i~vivGG~~ 224 (262)
T 1xrs_B 195 VHIQNMTHLIELLEAEGLRDRFVLLCGGPR 224 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGSEEEEECTT
T ss_pred chHHHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence 2346667888888887433456666654
No 336
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=46.62 E-value=37 Score=32.58 Aligned_cols=77 Identities=6% Similarity=-0.001 Sum_probs=53.3
Q ss_pred CeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHH-H
Q 037761 95 WHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFA-L 171 (753)
Q Consensus 95 w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~-~ 171 (753)
-+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++..... ..+. .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~~~~ 81 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTAFNE---NIIENT 81 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECGGGH---HHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCh---HHHHHH
Confidence 3578888864 557788889999999999988765432 22344556677888888999999987433 2455 6
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+.+.|+
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 777664
No 337
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=46.18 E-value=60 Score=32.12 Aligned_cols=80 Identities=8% Similarity=0.111 Sum_probs=53.4
Q ss_pred CeEEEEEEee-CCcccchHHHHHHHHHhC-CeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHH-HHHHHHH
Q 037761 95 WHEVVLMYED-TNYGAGFISFLVDELQEN-DIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTAL-ASRLFAL 171 (753)
Q Consensus 95 w~~vail~~d-~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~-~~~~~~~ 171 (753)
-..|+++..+ +.|.....+.+.+.+++. |..+..... ..+.......+..+.+.++|.|++.....+ ....++.
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 3578888764 345566778888899888 988765432 122334456677777789999998765433 3456677
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+.+.|+
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 777664
No 338
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=44.67 E-value=41 Score=32.36 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=48.6
Q ss_pred HHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeE-EEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 88 AVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIR-ISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~-v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
+-|+.-.-+.|+++..+ +.|.....+.+.+.+++.|.. +..... ..+.......+..+.+.++|.|++..
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFST---NSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECS---SCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33444455789999875 557788889999999999998 654322 22344556677888888999999987
No 339
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=44.65 E-value=67 Score=30.50 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe
Q 037761 83 VKAISAVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~ 160 (753)
....++.++..|.+.|-+.... .+......+.+++.+++.|+.+........ .....+...+...+.-+++.|++..
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecC
Confidence 4567778888999988876531 123345568899999999999876544321 2345677777777777888888766
Q ss_pred ChHHHHHHHHHHHHcCC
Q 037761 161 NTALASRLFALVAKNGM 177 (753)
Q Consensus 161 ~~~~~~~~~~~a~~~g~ 177 (753)
..+....+...|.+.|+
T Consensus 111 ~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 111 NYELLPYVDKKVKEYDF 127 (257)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 55666777777777775
No 340
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=44.58 E-value=62 Score=32.31 Aligned_cols=78 Identities=9% Similarity=0.013 Sum_probs=55.4
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~ 173 (753)
+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++....... ..+..+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT---DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 468888864 567788899999999999988765432 1234455667788888899999998654322 4566677
Q ss_pred HcCC
Q 037761 174 KNGM 177 (753)
Q Consensus 174 ~~g~ 177 (753)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7674
No 341
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=43.29 E-value=40 Score=32.67 Aligned_cols=80 Identities=9% Similarity=0.050 Sum_probs=53.2
Q ss_pred CCeEEEEEEee--C--CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHH
Q 037761 94 SWHEVVLMYED--T--NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLF 169 (753)
Q Consensus 94 ~w~~vail~~d--~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~ 169 (753)
.-+.|+++..+ + .|.....+.+.+.+++.|..+.....- .+.......+..+.+.++|.|++...... ...+
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 82 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI---HAKDSMVPIRYILETGSADGVIISKIEPN-DPRV 82 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS---SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC---cchhHHHHHHHHHHcCCccEEEEecCCCC-cHHH
Confidence 44678888874 2 677888899999999999887655321 12223344555566788999998764322 2456
Q ss_pred HHHHHcCC
Q 037761 170 ALVAKNGM 177 (753)
Q Consensus 170 ~~a~~~g~ 177 (753)
+.+.+.|+
T Consensus 83 ~~l~~~~i 90 (288)
T 3gv0_A 83 RFMTERNM 90 (288)
T ss_dssp HHHHHTTC
T ss_pred HHHhhCCC
Confidence 66677674
No 342
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=43.14 E-value=52 Score=31.63 Aligned_cols=71 Identities=11% Similarity=-0.096 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecc---cceeeeccccccccce
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVAS---RTDYVEFTLPYSESGV 488 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~---r~~~~~fs~p~~~~~~ 488 (753)
.++++.+.+ +.. .+++.+... .....+.+|.+|++|+++....+... ....+ ...|+..+.+
T Consensus 19 ~~~~~~f~~----~~P-~v~i~v~~~---------~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~l 83 (264)
T 4ecf_A 19 EAAGEQYTG----EHL-GTFINVQGG---------GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGI 83 (264)
T ss_dssp HHHHHHHHH----HST-TEEEEEEEE---------CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEE
T ss_pred HHHHHHHHH----HCC-CceEEEEeC---------CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEE
Confidence 444455544 652 245555443 56889999999999999765443331 11122 2578889999
Q ss_pred EEEEecccC
Q 037761 489 TMLVPVKRD 497 (753)
Q Consensus 489 ~~~v~~~~~ 497 (753)
+++++..++
T Consensus 84 vvvv~~~~p 92 (264)
T 4ecf_A 84 TPIVNKKVG 92 (264)
T ss_dssp EEEECTTSS
T ss_pred EEEEcCCCc
Confidence 999997754
No 343
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.11 E-value=1.1e+02 Score=23.40 Aligned_cols=71 Identities=10% Similarity=0.220 Sum_probs=55.1
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS 149 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 149 (753)
.++.-..-.+...++..+++++.+|..-..|+|+.+ +...+.|..+....|.++-.+. +.+||...+.++.
T Consensus 51 ativvvvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtvt------spddfkkslerli 121 (134)
T 2l69_A 51 ATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTVT------SPDDFKKSLERLI 121 (134)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEES------SHHHHHHHHHHHH
T ss_pred CeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEec------ChHHHHHHHHHHH
Confidence 456666778889999999999999998888888654 3567889999999998875432 2458888887764
No 344
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=42.87 E-value=4.7 Score=36.08 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=32.0
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEe
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTV 551 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~ 551 (753)
|.+..+|++.++|+++++++.+...+.+++.++.
T Consensus 89 P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 89 PVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 345
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=42.70 E-value=41 Score=32.50 Aligned_cols=79 Identities=6% Similarity=0.047 Sum_probs=52.8
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh-HHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT-ALASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~-~~~~~~~~~a 172 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+...-...+..+.+.++|.|++.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 367888753 557778888999999999988765432 1123344456777777889999886543 2223456667
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77674
No 346
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=42.63 E-value=1.4e+02 Score=28.78 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC-
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN- 161 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~- 161 (753)
...+++.....|...+.++.+...|+ +..+.++..-+..++.|.....+. . .+ ++..++..++|.|++...
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~f~-Gs~~~L~~ir~~v~lPVl~Kdfi~-d----~~--qi~ea~~~GAD~VlLi~a~ 152 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPSFQ-GAPEFLTAARQACSLPALRKDFLF-D----PY--QVYEARSWGADCILIIMAS 152 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTTC-CCHHHHHHHHHTSSSCEEEESCCC-S----TH--HHHHHHHTTCSEEEEETTT
T ss_pred HHHHHHHHHHCCCCEEEEeccccccC-CCHHHHHHHHHhcCCCEEECCccC-C----HH--HHHHHHHcCCCEEEEcccc
Confidence 35677777788999999998655554 455666665566677775443222 1 12 466777899999999864
Q ss_pred --hHHHHHHHHHHHHcCCC
Q 037761 162 --TALASRLFALVAKNGMM 178 (753)
Q Consensus 162 --~~~~~~~~~~a~~~g~~ 178 (753)
..+...++..++++||.
T Consensus 153 L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 153 VDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred cCHHHHHHHHHHHHHcCCe
Confidence 45788899999999973
No 347
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=42.53 E-value=18 Score=35.39 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=40.5
Q ss_pred eeehHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccce
Q 037761 409 GFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGV 488 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~ 488 (753)
.+...++..+.+ +.- ++++.+... ..+..|.+|++|+++....... ..+. +.++....+
T Consensus 106 ~~l~~~l~~f~~----~~P-~v~i~l~~~------------~~~~~l~~~~~Dl~i~~~~~~~---~~l~-~~~L~~~~~ 164 (306)
T 3hhg_A 106 HLLAPLAAKFNE----RYP-HIRLSLVSS------------EGYINLIERKVDIALRAGELDD---SGLR-ARHLFDSRF 164 (306)
T ss_dssp HTHHHHHHHHHH----HCT-TEEEEEECC------------SSSHHHHTTSSSCEEESCCCCC---SSCE-EEEEEEEEE
T ss_pred HHHHHHHHHHHH----HCC-CeEEEEEec------------cchhhHhhcCccEEEEeCCCCC---CCeE-EEEeeeeEE
Confidence 345667777766 654 355555531 2345688999999985433222 2222 356777788
Q ss_pred EEEEeccc
Q 037761 489 TMLVPVKR 496 (753)
Q Consensus 489 ~~~v~~~~ 496 (753)
+++++...
T Consensus 165 ~~v~~~~~ 172 (306)
T 3hhg_A 165 RVIASPEY 172 (306)
T ss_dssp EEEECHHH
T ss_pred EEEECHHH
Confidence 88887653
No 348
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=42.27 E-value=41 Score=33.09 Aligned_cols=79 Identities=5% Similarity=-0.016 Sum_probs=52.6
Q ss_pred EEEEEEeeCC-cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHHHH
Q 037761 97 EVVLMYEDTN-YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALVAK 174 (753)
Q Consensus 97 ~vail~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a~~ 174 (753)
+|+++..+.. |.....+.+.+++++.|..+.... +...+.......++.+.+.++|.|++..... .....++.+.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777775322 777788889999999998876542 1122234455677777778899999876433 33456677777
Q ss_pred cCC
Q 037761 175 NGM 177 (753)
Q Consensus 175 ~g~ 177 (753)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 674
No 349
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=42.04 E-value=23 Score=34.47 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=55.7
Q ss_pred CCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHH
Q 037761 94 SWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFAL 171 (753)
Q Consensus 94 ~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~ 171 (753)
.-+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++..... ....++.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 34678888864 456778889999999999988876542 22344556677888888999999877543 2345555
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+.+.|+
T Consensus 83 ~~~~~i 88 (291)
T 3egc_A 83 ELPKTF 88 (291)
T ss_dssp SSCTTS
T ss_pred hhccCC
Confidence 555553
No 350
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=41.79 E-value=43 Score=32.47 Aligned_cols=84 Identities=10% Similarity=0.074 Sum_probs=51.8
Q ss_pred HHHHHcCCeEEEEEEe-eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHH
Q 037761 88 AVLQNFSWHEVVLMYE-DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALAS 166 (753)
Q Consensus 88 ~~l~~~~w~~vail~~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~ 166 (753)
+-|+.-.-+.|+++.+ +++|.....+.+.+.+++.|..+.....-. . . +....+..+.+.++|.|++.....+.
T Consensus 5 r~L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~-~~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (289)
T 3k9c_A 5 QKLRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP-S--R-AEKVAVQALMRERCEAAILLGTRFDT- 79 (289)
T ss_dssp --------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT-T--B-CHHHHHHHHTTTTEEEEEEETCCCCH-
T ss_pred hhhhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC-C--H-HHHHHHHHHHhCCCCEEEEECCCCCH-
Confidence 3343334467888872 244677788899999999998877654322 1 2 25567788888899999998653322
Q ss_pred HHHHHHHHcCC
Q 037761 167 RLFALVAKNGM 177 (753)
Q Consensus 167 ~~~~~a~~~g~ 177 (753)
..++.+.+ |+
T Consensus 80 ~~~~~~~~-~i 89 (289)
T 3k9c_A 80 DELGALAD-RV 89 (289)
T ss_dssp HHHHHHHT-TS
T ss_pred HHHHHHHc-CC
Confidence 44555554 64
No 351
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=41.56 E-value=75 Score=28.75 Aligned_cols=68 Identities=13% Similarity=-0.005 Sum_probs=46.9
Q ss_pred HcCCeEEEEEEeeCC-----cccchHHHHHHHHHh---CCeEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeC
Q 037761 92 NFSWHEVVLMYEDTN-----YGAGFISFLVDELQE---NDIRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMN 161 (753)
Q Consensus 92 ~~~w~~vail~~d~~-----~g~~~~~~~~~~~~~---~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~ 161 (753)
.+.--+++||...|+ .-......+...+++ .|.++.....++++ ..++...+.+..+ .++|+|+..+-
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 334468888887554 123445678888888 79888887777754 5577777777654 47899998865
No 352
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=40.85 E-value=65 Score=32.30 Aligned_cols=66 Identities=3% Similarity=-0.036 Sum_probs=44.9
Q ss_pred CCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 94 SWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 94 ~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
.-..|+++..+ +.|.....+.+.+.+++.|..+..... . ..+.......+..+.+.++|.|++...
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-RSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-SSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-CCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 34578888864 456677888899999999988765432 1 111234456777787888999998743
No 353
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=40.50 E-value=45 Score=31.91 Aligned_cols=79 Identities=5% Similarity=0.117 Sum_probs=53.0
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a 172 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+...-...+..+.+.++|.|++..... .....++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 468888764 557778888999999999988765432 11233344567777788899998865432 223456677
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 354
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=40.32 E-value=1.2e+02 Score=31.22 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=56.0
Q ss_pred HHHcCCeEEEEEEeeCCcccchHHHHHHHHHhC------CeEEEEeeccCC---CCchhhHHHHHHHHhcCC--c---cE
Q 037761 90 LQNFSWHEVVLMYEDTNYGAGFISFLVDELQEN------DIRISHMSKIPT---SAEDFQISKELSKLSTMQ--T---RV 155 (753)
Q Consensus 90 l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~------g~~v~~~~~~~~---~~~~~d~~~~l~~l~~~~--~---~v 155 (753)
++.++.+++.||++...+.. ..+.+.+.+++. |+.+.. ..++. +.+..........+++.+ + |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46677789999886554333 566777777766 666542 22333 223456777778888777 7 99
Q ss_pred EEEEeChH--HHHHHHHHHHHcC
Q 037761 156 FIVHMNTA--LASRLFALVAKNG 176 (753)
Q Consensus 156 Ii~~~~~~--~~~~~~~~a~~~g 176 (753)
|+..|-+. |+..++......|
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rg 131 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRG 131 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGC
T ss_pred EEEECCcHHHHHHHHHHHHhcCC
Confidence 99887654 7777776655555
No 355
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=40.31 E-value=24 Score=34.69 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=47.0
Q ss_pred eeehHHHHHHHHHHHHh---c---CCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccc--eeeec-
Q 037761 409 GFCMEIFNATLEIVEEK---L---GMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRT--DYVEF- 479 (753)
Q Consensus 409 G~~~dll~~ia~~~~~~---l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~--~~~~f- 479 (753)
.+..+++..+.+ + . + +++++... +...++.+|.+|++|+++..-....+.. ..+.+
T Consensus 33 ~~lp~ll~~F~~----~~~~~~~P~--v~v~l~~~---------~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~ 97 (294)
T 3cvg_A 33 GLVKELADAFIK----SKVDSGSAP--FKVAWYKS---------DTTVTINYLKDGIVDVGITYSPVAERISIKHGISES 97 (294)
T ss_dssp THHHHHHHHHHH----HHHSCC-----CEEEEEEC---------CHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCS
T ss_pred HHHHHHHHHHHh----hhcccCCCC--eEEEEEeC---------CHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccc
Confidence 344566666666 7 6 5 55555553 6789999999999999975322211111 11122
Q ss_pred cc-cccccceEEEEecccC
Q 037761 480 TL-PYSESGVTMLVPVKRD 497 (753)
Q Consensus 480 s~-p~~~~~~~~~v~~~~~ 497 (753)
.. ++....++++++..++
T Consensus 98 ~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 98 PSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp SCEEEEEEEEEEEECTTCT
T ss_pred eeeeEEeccEEEEecCCCh
Confidence 24 7888899999998765
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.99 E-value=11 Score=35.37 Aligned_cols=37 Identities=19% Similarity=0.039 Sum_probs=32.2
Q ss_pred HHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeec
Q 037761 22 LLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFF 58 (753)
Q Consensus 22 Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~ 58 (753)
-+...+|..|+||.+|+=......+++.+++|+||.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 3445689999999999999999999999999999864
No 357
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=39.74 E-value=2.8e+02 Score=27.13 Aligned_cols=75 Identities=9% Similarity=-0.057 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcc--cccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHH
Q 037761 602 EYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPI--YRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDR 679 (753)
Q Consensus 602 ~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~ 679 (753)
+....+.+|+ +.+.+.............. ++..+-+. .....-+++++|+++-.+.=.+.|.-|.+.. ....
T Consensus 196 ~~~~~~~~Ge----~~~~~~~~~~~~~~~~~~~-~~~~~~p~eG~~~~~~~~~I~k~a~n~e~A~~fi~fllspe-~q~~ 269 (333)
T 4gl0_A 196 EIKLLMADNE----AGVAVTFSGEAAEMLSENE-DLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLKPE-NAAI 269 (333)
T ss_dssp THHHHTSCC-----CCEEEEEHHHHHHHHHHCT-TEEEECCSSCEEEEEEEEECBTTCSCHHHHHHHHHHHHSHH-HHHH
T ss_pred hhhhhhhccc----hheehhhhHHHHHHHhhcc-ccccccCCCCCccccceEEEEcCCCCHHHHHHHHHHhcCHH-HHHH
Confidence 4456677777 7766665554444444432 34433221 1112346789999998888888888877766 4444
Q ss_pred HHH
Q 037761 680 IEK 682 (753)
Q Consensus 680 ~~~ 682 (753)
+.+
T Consensus 270 ~~~ 272 (333)
T 4gl0_A 270 NAE 272 (333)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 358
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=39.67 E-value=41 Score=33.44 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=53.7
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCC--ccEEEEEeChH-HHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQ--TRVFIVHMNTA-LASRLFA 170 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~--~~vIi~~~~~~-~~~~~~~ 170 (753)
++|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.+ +|.|++..... .....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 478888863 557777888999999999988765432 122334455677777777 99999876543 3335677
Q ss_pred HHHHcCC
Q 037761 171 LVAKNGM 177 (753)
Q Consensus 171 ~a~~~g~ 177 (753)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7777664
No 359
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=39.63 E-value=57 Score=31.90 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=47.4
Q ss_pred eEEEEEEee---C-CcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 96 HEVVLMYED---T-NYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 96 ~~vail~~d---~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
.+|++++.+ + .|.....+.+.+.+++.|..+...+... ...+....++.+.+.++|.||+.+..
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVN---SEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCCC---SHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCCC---CHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 478888852 3 6778888999999999998876554321 23466678888888899999987654
No 360
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=39.61 E-value=1.9e+02 Score=28.63 Aligned_cols=94 Identities=6% Similarity=0.071 Sum_probs=45.9
Q ss_pred ceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc
Q 037761 71 FFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST 150 (753)
Q Consensus 71 ~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~ 150 (753)
.+|.++++.+.....|.. .+++.+|+.-..-.....+.+.+.+++.|+++.....-. ..+......++..
T Consensus 11 ~~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~----~~~~~~~~~~~~~ 80 (332)
T 2bon_A 11 SLYKKAGSETLYIQGMAE------FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWE----KGDAARYVEEARK 80 (332)
T ss_dssp -------------------------CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCS----TTHHHHHHHHHHH
T ss_pred eeeeeccCcchhhhhhhh------cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecC----cchHHHHHHHHHh
Confidence 456666666655555533 267888875322212456678888999998776554322 1133344444444
Q ss_pred CCccEEEEEeChHHHHHHHHHHHH
Q 037761 151 MQTRVFIVHMNTALASRLFALVAK 174 (753)
Q Consensus 151 ~~~~vIi~~~~~~~~~~~~~~a~~ 174 (753)
.++|.|++++--......++.+.+
T Consensus 81 ~~~d~vvv~GGDGTl~~v~~~l~~ 104 (332)
T 2bon_A 81 FGVATVIAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp HTCSEEEEEESHHHHHHHHHHHHH
T ss_pred cCCCEEEEEccchHHHHHHHHHhh
Confidence 567888877766666777777764
No 361
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=39.42 E-value=36 Score=33.41 Aligned_cols=79 Identities=8% Similarity=0.021 Sum_probs=52.8
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHH-HHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTAL-ASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~-~~~~~~~a 172 (753)
.+|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 478888753 457777888899999999988765432 122334455677777778999988765322 23456666
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66664
No 362
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=39.12 E-value=45 Score=31.92 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=52.3
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~ 173 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+...++|.|++...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 468888864 457777888999999999988754321 122334556778888889999888764321 23455666
Q ss_pred HcCC
Q 037761 174 KNGM 177 (753)
Q Consensus 174 ~~g~ 177 (753)
+.|+
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6664
No 363
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=38.83 E-value=76 Score=30.52 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=52.5
Q ss_pred CCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHH
Q 037761 94 SWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFAL 171 (753)
Q Consensus 94 ~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~ 171 (753)
.-+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++...... ...+..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---ESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 34578998863 557778889999999999988765432 122334456677787889999998764322 133445
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+. .|+
T Consensus 83 l~-~~i 87 (285)
T 3c3k_A 83 II-GAF 87 (285)
T ss_dssp HH-TTS
T ss_pred Hh-cCC
Confidence 55 553
No 364
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=38.42 E-value=44 Score=32.43 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=52.5
Q ss_pred CeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHH---HHHHHhcCCccEEEEEeChHHHHHHH
Q 037761 95 WHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISK---ELSKLSTMQTRVFIVHMNTALASRLF 169 (753)
Q Consensus 95 w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~---~l~~l~~~~~~vIi~~~~~~~~~~~~ 169 (753)
-+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+...... .++.+.+.++|.|++...... ...+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 83 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG---CGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDL 83 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHH
Confidence 3578888753 557778889999999999988765422 112223444 677777889999998764322 2345
Q ss_pred HHHHHcCC
Q 037761 170 ALVAKNGM 177 (753)
Q Consensus 170 ~~a~~~g~ 177 (753)
+.+.+.|+
T Consensus 84 ~~l~~~~i 91 (290)
T 2rgy_A 84 DELHRMHP 91 (290)
T ss_dssp HHHHHHCS
T ss_pred HHHhhcCC
Confidence 56666664
No 365
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=38.30 E-value=1e+02 Score=27.16 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=44.2
Q ss_pred CeEEEEEEeeCCc--c---cchHHHHHHHHHhC-----CeEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeC
Q 037761 95 WHEVVLMYEDTNY--G---AGFISFLVDELQEN-----DIRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMN 161 (753)
Q Consensus 95 w~~vail~~d~~~--g---~~~~~~~~~~~~~~-----g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~ 161 (753)
--+++||...|+- | ......+.+.++++ |.++.....++++ ..++...+.+..+ .++|+|+..+-
T Consensus 5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3578888865442 1 12234566777777 8888877777654 5577778877654 57899998864
No 366
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=38.12 E-value=90 Score=30.24 Aligned_cols=85 Identities=5% Similarity=-0.087 Sum_probs=53.6
Q ss_pred HHHHHHcCCeEEEEEEee--CCccc-chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH
Q 037761 87 SAVLQNFSWHEVVLMYED--TNYGA-GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA 163 (753)
Q Consensus 87 ~~~l~~~~w~~vail~~d--~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~ 163 (753)
++-|+.-.-+.|+++..+ +.|-. ...+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++.....
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 344444455789999874 35666 8899999999999988865532 22244556677888888999999876543
Q ss_pred HHHHHHHHHHHcC
Q 037761 164 LASRLFALVAKNG 176 (753)
Q Consensus 164 ~~~~~~~~a~~~g 176 (753)
+. .+..+.+.|
T Consensus 82 ~~--~~~~~~~~~ 92 (301)
T 3miz_A 82 RI--VDPESGDVS 92 (301)
T ss_dssp EE--CCCCCTTCC
T ss_pred cH--HHHHHHhCC
Confidence 22 333444444
No 367
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=38.05 E-value=22 Score=35.79 Aligned_cols=105 Identities=10% Similarity=-0.061 Sum_probs=54.7
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecC
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPL 597 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (753)
|.+..+|++.++|+++++++.+...+.+++.++.......... .... ....+.+......-..+.+.....+. +...
T Consensus 67 p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~viI~G~G~~g~~l~~~L~~~g~-v~vi 143 (336)
T 1lnq_A 67 PSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVA-KSRHVVICGWSESTLECLRELRGSEV-FVLA 143 (336)
T ss_dssp CCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEESCCHHHHHHHTTGGGSCE-EEEE
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhc-ccCCEEEECCcHHHHHHHHHHHhCCc-EEEE
Confidence 8899999999999999999999999999988877654322211 1111 12234444444333444432222223 4445
Q ss_pred CCHHHHHHHHhcCCCCCCeeEEEeccccHHHHH
Q 037761 598 SNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFL 630 (753)
Q Consensus 598 ~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~ 630 (753)
+...+..+ +.+.. ..++.+|...-+.+.
T Consensus 144 d~~~~~~~-~~~~~----~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 144 EDENVRKK-VLRSG----ANFVHGDPTRVSDLE 171 (336)
T ss_dssp SCGGGHHH-HHHTT----CEEEESCTTSHHHHH
T ss_pred eCChhhhh-HHhCC----cEEEEeCCCCHHHHH
Confidence 55555555 43322 455555554444433
No 368
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=37.92 E-value=65 Score=28.82 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=42.8
Q ss_pred eEEEEEEeeCCc--c---cchHHHHHHHHH---hCCeEEEEeeccCCCCchhhHHHHHHHHhcC-CccEEEEEeC
Q 037761 96 HEVVLMYEDTNY--G---AGFISFLVDELQ---ENDIRISHMSKIPTSAEDFQISKELSKLSTM-QTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d~~~--g---~~~~~~~~~~~~---~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIi~~~~ 161 (753)
-+++||...|+- | ......+...++ +.|.++ ....++++ ..++...+.+..+. ++|+|+..+-
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd--~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE--RDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 378888865541 1 234566777676 899988 55566643 55777788777653 7899998864
No 369
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=37.26 E-value=1.1e+02 Score=29.09 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=58.5
Q ss_pred CeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeec-cCCCCchhhHHHHHHHHhcCCccEEEEEeC----hHHHHHHH
Q 037761 95 WHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSK-IPTSAEDFQISKELSKLSTMQTRVFIVHMN----TALASRLF 169 (753)
Q Consensus 95 w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~----~~~~~~~~ 169 (753)
-.+|.+.....+.-.-....+...++.+|.++.+--. .| ..+ .+..+++.+||+|.+.+. ...+..++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp----~e~---l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP----AEE---VLAAVQKEKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC----SHH---HHHHHHHHCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC----HHH---HHHHHHHcCCCEEEEEeeccCCHHHHHHHH
Confidence 3466666666666666677788889999999865433 22 223 455566678999999874 34677788
Q ss_pred HHHHHcCCCCCCEEEEEcCcc
Q 037761 170 ALVAKNGMMSKGYTWIVTACL 190 (753)
Q Consensus 170 ~~a~~~g~~~~~~~wi~~~~~ 190 (753)
+++++.|.. -.+++++...
T Consensus 196 ~~l~~~~~~--~~v~vGG~~~ 214 (258)
T 2i2x_B 196 DMLLENGIK--IPFACGGGAV 214 (258)
T ss_dssp HHHHTTTCC--CCEEEESTTC
T ss_pred HHHHhcCCC--CcEEEECccC
Confidence 888888753 4466666543
No 370
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=37.21 E-value=48 Score=32.96 Aligned_cols=78 Identities=10% Similarity=-0.013 Sum_probs=52.2
Q ss_pred eEEEEEEe--eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHH
Q 037761 96 HEVVLMYE--DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173 (753)
Q Consensus 96 ~~vail~~--d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~ 173 (753)
..|+++.. .+.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++....... ..+..+.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS---DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC---CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 57999886 4667788899999999999988765421 2123344556777777889999887643221 3455555
Q ss_pred HcCC
Q 037761 174 KNGM 177 (753)
Q Consensus 174 ~~g~ 177 (753)
+.|+
T Consensus 137 ~~~i 140 (332)
T 2hsg_A 137 KSPV 140 (332)
T ss_dssp TSSS
T ss_pred hCCC
Confidence 5553
No 371
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=37.19 E-value=39 Score=33.89 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=17.5
Q ss_pred ChHHHHHHHHcCcccEEEe
Q 037761 447 TYDELLYQIKLKKFDAVVG 465 (753)
Q Consensus 447 ~~~~~~~~l~~~~~Di~~~ 465 (753)
+..+++++|++|++|++.-
T Consensus 41 s~~~Ci~aI~~g~aD~~~l 59 (332)
T 1iej_A 41 TYLDCIKAIANNEADAITL 59 (332)
T ss_dssp SHHHHHHHHHTTSCCBEEE
T ss_pred CHHHHHHHHHcCCCcEEEe
Confidence 7999999999999999863
No 372
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=36.93 E-value=51 Score=33.09 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=51.9
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~ 173 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 568888864 557778888999999999987765432 122334556777777888999988765432 24455666
Q ss_pred HcCC
Q 037761 174 KNGM 177 (753)
Q Consensus 174 ~~g~ 177 (753)
+.|+
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 6664
No 373
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=36.51 E-value=55 Score=30.47 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=35.4
Q ss_pred ehHHHHHHHHHHHHhc-CCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeee
Q 037761 411 CMEIFNATLEIVEEKL-GMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDIS 468 (753)
Q Consensus 411 ~~dll~~ia~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~ 468 (753)
..++.+.|++.|++.+ |++++++.+ +|......+.+|+.|+++.+..
T Consensus 111 ~~~~a~~i~~~l~~~i~GI~v~i~~~-----------~~~~~~~~~~~g~~d~~~~~w~ 158 (229)
T 3o6p_A 111 SKKTVEFVQGSIQDALDGVKVTVSPV-----------PFSVRLDRSNKGDFDAVIGGWS 158 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTEEEEEEEE-----------CHHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEec-----------CHHHHHHHhhcCCceEEEeccc
Confidence 3567778888887558 976666555 5788888899999999876543
No 374
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.41 E-value=19 Score=23.75 Aligned_cols=8 Identities=0% Similarity=-0.097 Sum_probs=3.3
Q ss_pred HHHhccch
Q 037761 730 RYIWQKPV 737 (753)
Q Consensus 730 ~~~~~~~~ 737 (753)
+++++|++
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 34444443
No 375
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=36.15 E-value=72 Score=29.05 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=42.5
Q ss_pred eEEEEEEeeCCcc-----cchHHHHHHHHHhCCeE--EEEeeccCCCCchhhHHHHHHHHhcC-CccEEEEEeC
Q 037761 96 HEVVLMYEDTNYG-----AGFISFLVDELQENDIR--ISHMSKIPTSAEDFQISKELSKLSTM-QTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d~~~g-----~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIi~~~~ 161 (753)
-+++||...|+-. ......+.+.+++.|.+ +.....++++ ...+...+.++.+. ++|+|+..+-
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd--~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE--QAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC--HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4788888766532 23456788888888876 4555555543 45777777776653 6899988864
No 376
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=35.50 E-value=71 Score=31.67 Aligned_cols=80 Identities=9% Similarity=-0.015 Sum_probs=53.2
Q ss_pred CCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHH
Q 037761 94 SWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFAL 171 (753)
Q Consensus 94 ~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~ 171 (753)
.-..|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++...... ...+..
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 44679999864 557778889999999999988765432 122334556777777889999998764211 124455
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+.+.|+
T Consensus 138 l~~~~i 143 (332)
T 2o20_A 138 LKNSRT 143 (332)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 555564
No 377
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=35.38 E-value=78 Score=26.70 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=38.6
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH--HHHHHHHHHHHcC
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA--LASRLFALVAKNG 176 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~--~~~~~~~~a~~~g 176 (753)
...+.++..+++.|..++... .+-...+..+++..+|+|++-...+ +...++++.++..
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~a--------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQEA--------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCcEEEEE--------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 456677888888886543221 1233456666677899999876533 6777888887644
No 378
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.21 E-value=22 Score=23.50 Aligned_cols=8 Identities=0% Similarity=0.015 Sum_probs=3.3
Q ss_pred HHHhccch
Q 037761 730 RYIWQKPV 737 (753)
Q Consensus 730 ~~~~~~~~ 737 (753)
+++++|++
T Consensus 32 ~~~~RRr~ 39 (44)
T 2ks1_B 32 GLFMRRRH 39 (44)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhhH
Confidence 33444443
No 379
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.08 E-value=42 Score=32.68 Aligned_cols=79 Identities=5% Similarity=0.044 Sum_probs=53.7
Q ss_pred CeEEEEEEe-------eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHH
Q 037761 95 WHEVVLMYE-------DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASR 167 (753)
Q Consensus 95 w~~vail~~-------d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~ 167 (753)
-+.|+++.. .+.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++...... ..
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVS---NNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCC---CSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcC---CCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 357888872 4567778889999999999988764321 222334455777788889999998754322 24
Q ss_pred HHHHHHHcCC
Q 037761 168 LFALVAKNGM 177 (753)
Q Consensus 168 ~~~~a~~~g~ 177 (753)
.++.+.+.|+
T Consensus 83 ~~~~l~~~~i 92 (295)
T 3hcw_A 83 IKQMLIDESM 92 (295)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 5566667664
No 380
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.96 E-value=53 Score=31.92 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=53.6
Q ss_pred CeEEEEEEe------eCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHH
Q 037761 95 WHEVVLMYE------DTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRL 168 (753)
Q Consensus 95 w~~vail~~------d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~ 168 (753)
-+.|+++.. .+.|.....+.+.+.+++.|..+.....-. .......+..+.+.++|.|++....... ..
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-FR 80 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-HH
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-HH
Confidence 357888886 345777788999999999998876654321 2234456667777889999988654322 45
Q ss_pred HHHHHHcCC
Q 037761 169 FALVAKNGM 177 (753)
Q Consensus 169 ~~~a~~~g~ 177 (753)
+..+.+.|+
T Consensus 81 ~~~l~~~~i 89 (294)
T 3qk7_A 81 LQYLQKQNF 89 (294)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 666777675
No 381
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=34.49 E-value=1.2e+02 Score=26.26 Aligned_cols=83 Identities=6% Similarity=0.162 Sum_probs=48.4
Q ss_pred eEEEEEEeeCCcc--cchHHHHHHHHHhCCeEEEEeeccCCCCchh-hHHHHHHHHhcCCccEEEEEeCh--HH--HHHH
Q 037761 96 HEVVLMYEDTNYG--AGFISFLVDELQENDIRISHMSKIPTSAEDF-QISKELSKLSTMQTRVFIVHMNT--AL--ASRL 168 (753)
Q Consensus 96 ~~vail~~d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-d~~~~l~~l~~~~~~vIi~~~~~--~~--~~~~ 168 (753)
+++.|+|. +.+| +..++.+.+.+++.|.++.... +. .. +....+..+. .+|.|++.++. .. ...+
T Consensus 5 ~kv~IvY~-S~~GnT~~iA~~ia~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~ 76 (159)
T 3fni_A 5 TSIGVFYV-SEYGYSDRLAQAIINGITKTGVGVDVVD-LG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQGA 76 (159)
T ss_dssp CEEEEEEC-TTSTTHHHHHHHHHHHHHHTTCEEEEEE-SS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHH
T ss_pred CEEEEEEE-CCChHHHHHHHHHHHHHHHCCCeEEEEE-Cc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHH
Confidence 57888884 4455 4667888999998888754332 22 22 4444555553 36888887652 12 2356
Q ss_pred HHHHHHcCCCCCCEEEEEc
Q 037761 169 FALVAKNGMMSKGYTWIVT 187 (753)
Q Consensus 169 ~~~a~~~g~~~~~~~wi~~ 187 (753)
+..+....+.. ..+.+++
T Consensus 77 l~~l~~~~~~~-k~va~fg 94 (159)
T 3fni_A 77 LSTILGSVNEK-QAVGIFE 94 (159)
T ss_dssp HHHHHHHCCTT-SEEEEEC
T ss_pred HHHHHhhcccC-CEEEEEE
Confidence 66666555433 3444443
No 382
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=34.46 E-value=1.6e+02 Score=25.32 Aligned_cols=60 Identities=7% Similarity=0.019 Sum_probs=39.0
Q ss_pred eCCcccchHHHHHHHHHhCCeEEEEeeccCCC-CchhhHHHHHHHHh-cCCc-cEEEEEeChH
Q 037761 104 DTNYGAGFISFLVDELQENDIRISHMSKIPTS-AEDFQISKELSKLS-TMQT-RVFIVHMNTA 163 (753)
Q Consensus 104 d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~d~~~~l~~l~-~~~~-~vIi~~~~~~ 163 (753)
.|.-|.++.+.+.+.|++.|.+|...-.++.. .+-+|+...+.+.. +..+ +.|++|+.+.
T Consensus 8 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 70 (149)
T 2vvr_A 8 CDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGV 70 (149)
T ss_dssp ECTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred eCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcH
Confidence 45678899999999999999998876554322 12345555554443 3334 5566666664
No 383
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=34.28 E-value=4.3e+02 Score=27.74 Aligned_cols=140 Identities=10% Similarity=0.025 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCCCc----HHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHH
Q 037761 12 DCGKLILAVDLLKKFQVQAIIGPQIPAA----APFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAIS 87 (753)
Q Consensus 12 ~~~a~~~a~~Li~~~~V~aviG~~~s~~----~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~ 87 (753)
+..+..++.+.++. +|.+|| .+++. ...+..++..+++.+|.|.+ ..+...+ +...+..
T Consensus 46 a~~v~~~v~e~~~~-Gv~~vi--is~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~-------- 108 (480)
T 3dmy_A 46 GEYAAELANQALDR-NLNVMM--FSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN-------- 108 (480)
T ss_dssp HHHHHHHHHHHHHT-TCEEEE--CCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC--------
T ss_pred HHHHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC--------
Confidence 45666777777766 777555 22332 23566788899999999987 2111111 1122211
Q ss_pred HHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCC-----chhhHHHHHHHHhc-CCccEEEEEeC
Q 037761 88 AVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSA-----EDFQISKELSKLST-MQTRVFIVHMN 161 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~d~~~~l~~l~~-~~~~vIi~~~~ 161 (753)
.+.--+|++|.+... +...+...+.+.|+-+.....+-... .+.++...|.-+.+ ...++|++++.
T Consensus 109 ----~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E 180 (480)
T 3dmy_A 109 ----VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSK 180 (480)
T ss_dssp ----CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred ----CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 022458999997665 34456667777887777776665331 45678888888874 67899999985
Q ss_pred ---hHHHHHHHHHHHHcC
Q 037761 162 ---TALASRLFALVAKNG 176 (753)
Q Consensus 162 ---~~~~~~~~~~a~~~g 176 (753)
....+.|++.+++.+
T Consensus 181 ~~~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 181 PPAEAVRLKIVNAMKATG 198 (480)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHhCC
Confidence 223477998888644
No 384
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=34.02 E-value=63 Score=30.73 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeee
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDIS 468 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~ 468 (753)
.++.+.|++.|+ ++|++++++.+ +|......+.+|+.||++.+..
T Consensus 142 ~~~a~~iq~~l~-~iGi~v~i~~~-----------~~~~~~~~~~~~~~d~~~~~w~ 186 (258)
T 3lvu_A 142 QTVLEIYTRALE-RLGIAAQIEKV-----------DNAQYTARVAELDFDLTPFRRD 186 (258)
T ss_dssp HHHHHHHHHHHH-TTTCCCEEEEE-----------CHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHH-HcCCeeEEEec-----------CHHHHHHHhccCCccEEEecCC
Confidence 467777888777 59987776655 5788888899999999876543
No 385
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=33.99 E-value=19 Score=33.38 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=28.1
Q ss_pred eEEEEcCCCCCcHHHHHHhhccCCccEEeec
Q 037761 28 VQAIIGPQIPAAAPFLVELGEKAQVPIISFF 58 (753)
Q Consensus 28 V~aviG~~~s~~~~av~~i~~~~~vP~is~~ 58 (753)
+.+++||.+|+=......+++.+++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999999999999999999999975
No 386
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=33.93 E-value=92 Score=29.85 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=34.7
Q ss_pred ChHHHHHHHHcCcccEEEeeeeeec-c--cceeeeccccccccceEEEEecccC
Q 037761 447 TYDELLYQIKLKKFDAVVGDISIVA-S--RTDYVEFTLPYSESGVTMLVPVKRD 497 (753)
Q Consensus 447 ~~~~~~~~l~~~~~Di~~~~~~~t~-~--r~~~~~fs~p~~~~~~~~~v~~~~~ 497 (753)
.....+.+|.+|++|+++....... + ....+ ...|+..+.++++++..++
T Consensus 40 gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv~~~~~ 92 (265)
T 4exl_A 40 GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIVNKEVD 92 (265)
T ss_dssp CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECTTCC
T ss_pred CcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEECCCCc
Confidence 5788999999999999975433221 1 11112 2568889999999997654
No 387
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=33.85 E-value=1.1e+02 Score=29.06 Aligned_cols=87 Identities=9% Similarity=0.094 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
...+++..... -.-+.++++.. |-.+..+.+...-+..++.|.....+. +.+ ++..++..|||+|.+.+..
T Consensus 63 ~~~iA~~y~~~-A~~IsVlTd~~-~F~gs~~dL~~ir~~v~lPvLrKDfi~-----~~~--qi~ea~~~GAD~ilLi~a~ 133 (251)
T 1i4n_A 63 LEDFIRMYDEL-ADAISILTEKH-YFKGDPAFVRAARNLTCRPILAKDFYI-----DTV--QVKLASSVGADAILIIARI 133 (251)
T ss_dssp HHHHHHHHHHH-CSEEEEECCCS-SSCCCTHHHHHHHTTCCSCEEEECCCC-----STH--HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHHHh-CCceEEEeccc-ccCCCHHHHHHHHHhCCCCEEEeeCCC-----CHH--HHHHHHHcCCCEEEEeccc
Confidence 34455544443 56777777544 444555566665556677776554321 133 3555888999999998764
Q ss_pred ---HHHHHHHHHHHHcCCC
Q 037761 163 ---ALASRLFALVAKNGMM 178 (753)
Q Consensus 163 ---~~~~~~~~~a~~~g~~ 178 (753)
.+...++..++++||.
T Consensus 134 l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 134 LTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp SCHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHHHHHcCCe
Confidence 5788899999999973
No 388
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=33.69 E-value=2.8e+02 Score=28.02 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=63.0
Q ss_pred CCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC---CchhhHHHHH
Q 037761 69 HPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS---AEDFQISKEL 145 (753)
Q Consensus 69 ~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~---~~~~d~~~~l 145 (753)
.||-....+.... .+.++++.. +++.||++...+. ..+.+.+.+++.|+.+.... ++.. .+...+...+
T Consensus 22 ~~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~ 93 (368)
T 3qbe_A 22 PPYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRIE-IPDAEAGKDLPVVGFIW 93 (368)
T ss_dssp SCEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEEE-CCSGGGGGBHHHHHHHH
T ss_pred CCceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEEE-eCCCCCCCCHHHHHHHH
Confidence 3666667776433 345555543 8998888766544 36789999999998764332 3321 2234566666
Q ss_pred HHHhc---CCccEEEEEeChH--HHHHHHHHHHHcC
Q 037761 146 SKLST---MQTRVFIVHMNTA--LASRLFALVAKNG 176 (753)
Q Consensus 146 ~~l~~---~~~~vIi~~~~~~--~~~~~~~~a~~~g 176 (753)
..+++ .+.|+|+..|.+. |+..++......|
T Consensus 94 ~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rg 129 (368)
T 3qbe_A 94 EVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRG 129 (368)
T ss_dssp HHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGC
T ss_pred HHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccC
Confidence 66654 3479999887765 6677776555445
No 389
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=33.56 E-value=47 Score=32.18 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=47.6
Q ss_pred CeEEEEEEe--eCCcccchHHHHHHHHHhCCeEEEEe-eccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHH
Q 037761 95 WHEVVLMYE--DTNYGAGFISFLVDELQENDIRISHM-SKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFAL 171 (753)
Q Consensus 95 w~~vail~~--d~~~g~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~ 171 (753)
-++|+++.. +++|.....+.+.+.+++.|..+... .. ..+.......+..+.+.++|.|++....... ..++.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 83 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSG---SADPEEQKHALLTAIERPVMGILLLSIALTD-DNLQL 83 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCC---CCCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHHHH
Confidence 357888875 46677888899999999999887654 21 1112233446777777899999988654322 34555
Q ss_pred HHHcCC
Q 037761 172 VAKNGM 177 (753)
Q Consensus 172 a~~~g~ 177 (753)
+.+.|+
T Consensus 84 l~~~~i 89 (290)
T 3clk_A 84 LQSSDV 89 (290)
T ss_dssp HHCC--
T ss_pred HHhCCC
Confidence 655553
No 390
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=33.01 E-value=55 Score=31.60 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=51.1
Q ss_pred eEEEEEEee------CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHH
Q 037761 96 HEVVLMYED------TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLF 169 (753)
Q Consensus 96 ~~vail~~d------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~ 169 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF---SEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC---CSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC---CCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 467777654 457778889999999999988765321 1122234456777778899999987643221 345
Q ss_pred HHHHHcCC
Q 037761 170 ALVAKNGM 177 (753)
Q Consensus 170 ~~a~~~g~ 177 (753)
+.+.+.|+
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 56666664
No 391
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=32.75 E-value=1.9e+02 Score=23.09 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC--hHHHHHHHHHHHHc
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN--TALASRLFALVAKN 175 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~--~~~~~~~~~~a~~~ 175 (753)
...+.+...+++.|..+... . +....+..+.+..+|+|++-.. ..+...+++++++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE---C------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 35677888888888765422 1 3344566667778999999764 34567788888886
No 392
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=32.56 E-value=20 Score=36.85 Aligned_cols=93 Identities=10% Similarity=0.030 Sum_probs=55.8
Q ss_pred CceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHh
Q 037761 70 PFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLS 149 (753)
Q Consensus 70 ~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 149 (753)
|+-+.+.+... ..+.++++.+| +++.||++...+.....+.+.+.+++.|+.+. .+....+...+......++
T Consensus 20 p~~i~~G~g~l---~~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~---~~~ge~~~~~v~~~~~~~~ 92 (376)
T 1kq3_A 20 PGRYVQGAGAI---NILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQ---IFGGECSDEEIERLSGLVE 92 (376)
T ss_dssp CSEEEEETTGG---GGHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEE---ECCSSCBHHHHHHHHTTCC
T ss_pred CceEEECCCHH---HHHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEE---EeCCCCCHHHHHHHHHHHh
Confidence 44445555432 23556777778 89989986543332224556666777774432 2332223446666666667
Q ss_pred cCCccEEEEEeChH--HHHHHHH
Q 037761 150 TMQTRVFIVHMNTA--LASRLFA 170 (753)
Q Consensus 150 ~~~~~vIi~~~~~~--~~~~~~~ 170 (753)
+ ++|+|+-.|-+. |+..++.
T Consensus 93 ~-~~d~IIavGGGsv~D~aK~iA 114 (376)
T 1kq3_A 93 E-ETDVVVGIGGGKTLDTAKAVA 114 (376)
T ss_dssp T-TCCEEEEEESHHHHHHHHHHH
T ss_pred c-CCCEEEEeCCcHHHHHHHHHH
Confidence 7 999999887654 6666665
No 393
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=32.01 E-value=1.5e+02 Score=25.68 Aligned_cols=66 Identities=6% Similarity=0.005 Sum_probs=42.5
Q ss_pred EEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC-CchhhHHHHHHHHh-cCCc-cEEEEEeChH
Q 037761 98 VVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS-AEDFQISKELSKLS-TMQT-RVFIVHMNTA 163 (753)
Q Consensus 98 vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~d~~~~l~~l~-~~~~-~vIi~~~~~~ 163 (753)
|-|....|.-|.++.+.+.+.|++.|.+|...-..+.. .+-+|+...+.+.. +..+ +.|++|+.+.
T Consensus 13 ~~i~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 81 (155)
T 1o1x_A 13 VKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGL 81 (155)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSH
T ss_pred eeEEEeeCchHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcH
Confidence 34444556788999999999999999998877554322 12345555554433 3334 5666676664
No 394
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=31.55 E-value=2.8e+02 Score=31.09 Aligned_cols=85 Identities=5% Similarity=-0.106 Sum_probs=56.3
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC----hHHHHHHHHH
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN----TALASRLFAL 171 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~----~~~~~~~~~~ 171 (753)
.+|.+.....+.-.-..+.+...++..|.+|..--. ......++..+++.++|+|.+++. ...+..+++.
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 678 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPL------FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKE 678 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCT------TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHH
Confidence 355555555554444566677789999999975322 123445778888899999999874 4466778889
Q ss_pred HHHcCCCCCCEEEEEc
Q 037761 172 VAKNGMMSKGYTWIVT 187 (753)
Q Consensus 172 a~~~g~~~~~~~wi~~ 187 (753)
+++.|+. .-.+++++
T Consensus 679 Lr~~G~~-dv~VivGG 693 (762)
T 2xij_A 679 LNSLGRP-DILVMCGG 693 (762)
T ss_dssp HHHTTCT-TSEEEEEE
T ss_pred HHhcCCC-CCEEEEeC
Confidence 9999863 23444443
No 395
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=30.90 E-value=1.4e+02 Score=28.68 Aligned_cols=81 Identities=17% Similarity=0.107 Sum_probs=57.8
Q ss_pred CeEEEe--cCchHHHHHHHhhCCCCC--ceecCCCHHHHHHHHhcCCCCCCeeEEEeccc---------cHHHHHhcCCC
Q 037761 569 HFVGFQ--SGSFVEDFLVKQLNFSRN--QTRPLSNFGEYKEALSNGSRKGGVSAIFEEIP---------YIKVFLKKYSS 635 (753)
Q Consensus 569 ~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~---------~~~~~~~~~~~ 635 (753)
.++++. .|++.+.-..+ .++.. +..++.+.++.+++|.+|+ +|..+.+.. .++.+.+ .
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~--~f~~~~~~~~~~~s~~~v~~aV~~g~----~d~gVvPiENS~~G~V~~t~DlL~~---~ 74 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQ--YFSENEATFQPKSNLFEVIKAVADDD----TSIGVVPIENSIEGTINIVADALAQ---Q 74 (267)
T ss_dssp CEEEEECSTTSHHHHHHHH--HCCTTSSEEEEESSHHHHHHHHHHCS----SEEEEEEEESCSSSCSHHHHHHHHT---T
T ss_pred cEEEEECCCCcHHHHHHHH--hhccCCceEEEcCCHHHHHHHHHcCC----CCEEEEEehhcCCCChHHHHHHhhc---C
Confidence 467774 77887776664 34443 4889999999999999998 887765421 2223332 2
Q ss_pred CcEEeCcccccCceEEEEcCCCC
Q 037761 636 KYTTAGPIYRTDGLGFAFAKDSP 658 (753)
Q Consensus 636 ~l~~~~~~~~~~~~~~~~~k~s~ 658 (753)
+++++++...+-..++..+++..
T Consensus 75 ~l~I~gE~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 75 DVFAHGEIRLDINFALYGNGTDS 97 (267)
T ss_dssp SSEEEEEEEEECCEEEECCSSCC
T ss_pred CcEEEEEEEEEeeeEEEecCCCC
Confidence 69999998888888888877643
No 396
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=30.84 E-value=1.6e+02 Score=28.84 Aligned_cols=63 Identities=25% Similarity=0.252 Sum_probs=41.6
Q ss_pred cCChhHhhhcCCeEEEecCchHHHHHHHhhCCCCCceecC-CCHHHHHHHHhcCCCCCCeeEEEeccccHHH
Q 037761 558 FADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPL-SNFGEYKEALSNGSRKGGVSAIFEEIPYIKV 628 (753)
Q Consensus 558 i~s~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~ 628 (753)
..+++||- .|.+||..+--- ...++. ..|+.+++.+ -+.+.-+..|.+|. .|+++....=+..
T Consensus 113 ~~~l~~LP-~Ga~VGTSSlRR-~aQL~~--~rPdl~i~~lRGNV~TRL~KL~~g~----~DaiiLA~AGL~R 176 (313)
T 1gtk_A 113 YDSLDALP-AGSIVGTSSLRR-QCQLAE--RRPDLIIRSLRGNVGTRLSKLDNGE----YDAIILAVAGLKR 176 (313)
T ss_dssp CSSGGGCC-TTCEEECCCHHH-HHHHHH--HCTTSEEECCCSCHHHHHHHHHTTS----CSEEEEEHHHHHH
T ss_pred CCChhhCC-CCCEEecCCHHH-HHHHHH--HCCCCEEEeCCCCHHHHHHHhhCCC----CCEEEHhhhHHHH
Confidence 34788885 566777533222 223332 5666677665 46788899999998 9999987655543
No 397
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=30.57 E-value=4.9 Score=34.58 Aligned_cols=34 Identities=9% Similarity=0.256 Sum_probs=30.9
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEe
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTV 551 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~ 551 (753)
|.+..+|++.+.|+++++.+.+...+.+++.+..
T Consensus 65 P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 65 PVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887643
No 398
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=30.02 E-value=2.7e+02 Score=24.08 Aligned_cols=80 Identities=10% Similarity=0.209 Sum_probs=46.5
Q ss_pred eEEEEEEeeCCcc------cchHHHHHHHHHhCCeEEEEe-eccCCCCchhhHHHHHHHHhc-CCccEEEEEeChHHH--
Q 037761 96 HEVVLMYEDTNYG------AGFISFLVDELQENDIRISHM-SKIPTSAEDFQISKELSKLST-MQTRVFIVHMNTALA-- 165 (753)
Q Consensus 96 ~~vail~~d~~~g------~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~~~~~-- 165 (753)
++|.++.+.-..| ......+.+.+.+.|..+... ..++ +.+..+....+.+... .+||+|++..-..+.
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~-G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~ 81 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASIS-GETSGGALRRLDALLEQYEPTHVLIELGANDGLR 81 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCT-TCCHHHHHHHHHHHHHHHCCSEEEEECCHHHHHT
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcC-CccHHHHHHHHHHHHhhcCCCEEEEEeecccCCC
Confidence 5666666544443 355677788887765443322 1222 3344455555555433 489999998766653
Q ss_pred -----------HHHHHHHHHcC
Q 037761 166 -----------SRLFALVAKNG 176 (753)
Q Consensus 166 -----------~~~~~~a~~~g 176 (753)
..+++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~ 103 (185)
T 3hp4_A 82 GFPVKKMQTNLTALVKKSQAAN 103 (185)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHcC
Confidence 44666776654
No 399
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=29.84 E-value=1.7e+02 Score=25.27 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=39.9
Q ss_pred eeCCcccchHHHHHHHHHhCCeEEEEeeccCCC-CchhhHHHHHHHH-hcCCc-cEEEEEeChH
Q 037761 103 EDTNYGAGFISFLVDELQENDIRISHMSKIPTS-AEDFQISKELSKL-STMQT-RVFIVHMNTA 163 (753)
Q Consensus 103 ~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~d~~~~l~~l-~~~~~-~vIi~~~~~~ 163 (753)
..|..|.++.+.+.+.|++.|.+|...-..+.. .+-+|+...+.+. .+..+ +.|++|+.+.
T Consensus 6 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 69 (149)
T 3he8_A 6 GSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGL 69 (149)
T ss_dssp EECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred EECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 345678899999999999999998876554422 1234555555443 34444 4566676664
No 400
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=29.77 E-value=4.2e+02 Score=26.16 Aligned_cols=80 Identities=6% Similarity=-0.042 Sum_probs=48.6
Q ss_pred CCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHH
Q 037761 598 SNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRM 677 (753)
Q Consensus 598 ~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~ 677 (753)
.+..+....+.+|+ +...+..........+... ++.++.+-......+++++|+++-.+.--+.|..|.+.. ..
T Consensus 220 ~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~~~~~~~i~k~s~~~~~A~~fi~~l~s~e-~q 293 (365)
T 3rpw_A 220 TTAAQPPQLILDGE----ADMCLAYTGSMSKLALEGA-PIDLTFNQGFVYYDFFSIPKGAPNYDNALKLLSWRLDPK-RA 293 (365)
T ss_dssp CSTTHHHHHHHTTS----CSEEEEEHHHHHHHHHHTC-SEEEEEEEEEEEEEEEECBTTCTTHHHHHHHHHHHTCHH-HH
T ss_pred CCccHHHHHHHcCC----eEEEEehhHHHHHHHhCCC-CeEEeeCCeeeeceEEEEECCCCCHHHHHHHHHHHcCHH-HH
Confidence 35567788888998 8777755444433333322 444443211222346788999998888888888877666 44
Q ss_pred HHHHHh
Q 037761 678 DRIEKK 683 (753)
Q Consensus 678 ~~~~~~ 683 (753)
..+.+.
T Consensus 294 ~~~~~~ 299 (365)
T 3rpw_A 294 AQLTST 299 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 401
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=29.69 E-value=60 Score=27.59 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=28.5
Q ss_pred CccEEEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCc
Q 037761 152 QTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTAC 189 (753)
Q Consensus 152 ~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 189 (753)
.+|+++++...+....++.++.+.|. +.+|+.++.
T Consensus 69 ~vDlvii~vp~~~v~~v~~~~~~~g~---~~i~~~~~~ 103 (138)
T 1y81_A 69 DVDVIVFVVPPKVGLQVAKEAVEAGF---KKLWFQPGA 103 (138)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC---CEEEECTTS
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHcCC---CEEEEcCcc
Confidence 58999999998888889988888773 458887754
No 402
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.64 E-value=2.2e+02 Score=22.84 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=38.6
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh--HHHHHHHHHHHHcC
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT--ALASRLFALVAKNG 176 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~--~~~~~~~~~a~~~g 176 (753)
...+.+...+++.|..+... . +....+..+++..+|+|++-... .+...+++++++..
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA---H------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCcEEEEe---C------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 35567777788888766422 1 23345666667789999987653 35677888888755
No 403
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=29.59 E-value=39 Score=32.24 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=53.8
Q ss_pred cCcHHHHHHHHHHHH-----HcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcC
Q 037761 77 QNDSLQVKAISAVLQ-----NFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTM 151 (753)
Q Consensus 77 p~~~~~~~a~~~~l~-----~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~ 151 (753)
+++...++.+++++. ...-++|.++..+. ..+.+.+.|++.|..+.....|.......+.......+...
T Consensus 110 ~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~ 184 (254)
T 4es6_A 110 PEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAE 184 (254)
T ss_dssp CSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHT
T ss_pred CCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhC
Confidence 333445677777664 34557876665432 34578888999998876665553211111112233344456
Q ss_pred CccEEEEEeChHHHHHHHHHHHH
Q 037761 152 QTRVFIVHMNTALASRLFALVAK 174 (753)
Q Consensus 152 ~~~vIi~~~~~~~~~~~~~~a~~ 174 (753)
..|+|+ +.++..+..|+..+.+
T Consensus 185 ~~d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 185 RLNGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp TCCEEE-CCSHHHHHHHHHHHGG
T ss_pred CCCEEE-EcCHHHHHHHHHHhhH
Confidence 677655 5677777778776543
No 404
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=29.37 E-value=2.4e+02 Score=23.67 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=40.1
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC--hHHHHHHHHHHHHcC
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN--TALASRLFALVAKNG 176 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~--~~~~~~~~~~a~~~g 176 (753)
...+.+...+++.|..+... .+....+..+++..+|+|++-.. ..+...+++.+++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV---------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe---------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45677888888888765322 13445667777788999999765 335677888888754
No 405
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=29.27 E-value=67 Score=30.58 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecc
Q 037761 413 EIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVAS 472 (753)
Q Consensus 413 dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~ 472 (753)
++.+.|+++|++ +|++++++.+ +|......+.+|+.||++.+.....+
T Consensus 142 ~~a~~iq~~l~~-iGI~v~i~~~-----------~~~~~~~~~~~~~~d~~~~~w~~~~d 189 (259)
T 3pam_A 142 KVALAFQSNLSR-LGIHAEIRTV-----------DDSQYQNRLGMFNYDMIIGKLKNSLS 189 (259)
T ss_dssp HHHHHHHHHHHT-TTCEEEEEEC-----------CHHHHHHHHHHTCCSEEEEEECCCSS
T ss_pred HHHHHHHHHHHH-cCCEEEEEec-----------CHHHHHHHHhcCCeeEEEeccCCCCC
No 406
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=28.92 E-value=31 Score=33.42 Aligned_cols=81 Identities=6% Similarity=0.066 Sum_probs=52.4
Q ss_pred eEEEEEEee----CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHH
Q 037761 96 HEVVLMYED----TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFA 170 (753)
Q Consensus 96 ~~vail~~d----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~ 170 (753)
++|+++..+ ++|.....+.+.+.+++.|..+.....- ...+.......+..+.+.++|.|++..... .....++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPE-KEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCS-STTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCC-CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 478888753 5677788889999999999887654221 012233455677777788999999876533 2224555
Q ss_pred HHHHcCC
Q 037761 171 LVAKNGM 177 (753)
Q Consensus 171 ~a~~~g~ 177 (753)
.+.+.|+
T Consensus 85 ~~~~~~i 91 (289)
T 3brs_A 85 EIKDAGI 91 (289)
T ss_dssp TTGGGTC
T ss_pred HHHHCCC
Confidence 5555553
No 407
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=28.71 E-value=1.4e+02 Score=29.18 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=43.3
Q ss_pred CeEEEEEEe-eCCcccchHHHHHHHHHhCCe------EEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 95 WHEVVLMYE-DTNYGAGFISFLVDELQENDI------RISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 95 w~~vail~~-d~~~g~~~~~~~~~~~~~~g~------~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
-.+|+|+.- +++.-....+.|++.|++.|. ++.+... ..+......+++++.+.++|+|+..+.
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a---~gd~~~~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTA---QGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEESH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeC---CCCHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 357888753 444445667889999999873 4433321 223556777888999999999886643
No 408
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=28.08 E-value=1.8e+02 Score=25.62 Aligned_cols=61 Identities=5% Similarity=0.033 Sum_probs=39.5
Q ss_pred eeCCcccchHHHHHHHHHhCCeEEEEeeccCCC-CchhhHHHHHHHH-hcCCcc-EEEEEeChH
Q 037761 103 EDTNYGAGFISFLVDELQENDIRISHMSKIPTS-AEDFQISKELSKL-STMQTR-VFIVHMNTA 163 (753)
Q Consensus 103 ~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~d~~~~l~~l-~~~~~~-vIi~~~~~~ 163 (753)
..|..|.++.+.+.+.|++.|.+|...-..... .+-+|+...+.+. .+..+| .|++|+.+.
T Consensus 26 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 89 (169)
T 3ph3_A 26 GSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGL 89 (169)
T ss_dssp EECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred EeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 345678889999999999999998876554422 1234555555443 344444 566666664
No 409
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=27.89 E-value=1.5e+02 Score=33.02 Aligned_cols=85 Identities=8% Similarity=-0.094 Sum_probs=56.6
Q ss_pred eEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC----hHHHHHHHHH
Q 037761 96 HEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN----TALASRLFAL 171 (753)
Q Consensus 96 ~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~----~~~~~~~~~~ 171 (753)
.+|.+.....+.-.-..+.+...++..|.+|..--. ......++..+++.++|+|.+++. ...+..++++
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 670 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL------FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKE 670 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCT------TBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHH
Confidence 355555555554444566677789999999865322 123455778888899999999874 4467778889
Q ss_pred HHHcCCCCCCEEEEEc
Q 037761 172 VAKNGMMSKGYTWIVT 187 (753)
Q Consensus 172 a~~~g~~~~~~~wi~~ 187 (753)
+++.|+. .-.+++++
T Consensus 671 L~~~G~~-~i~VivGG 685 (727)
T 1req_A 671 LDKLGRP-DILITVGG 685 (727)
T ss_dssp HHHTTCT-TSEEEEEE
T ss_pred HHhcCCC-CCEEEEcC
Confidence 9999863 23444443
No 410
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.78 E-value=1.4e+02 Score=29.42 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=46.8
Q ss_pred CCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 94 SWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 94 ~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
.-+.|+++..+ +.|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++...
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 34689999864 557778889999999999988765422 222344556677777889999998754
No 411
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=27.55 E-value=93 Score=30.21 Aligned_cols=20 Identities=20% Similarity=0.019 Sum_probs=17.2
Q ss_pred ChHHHHHHHHcCcccEEEee
Q 037761 447 TYDELLYQIKLKKFDAVVGD 466 (753)
Q Consensus 447 ~~~~~~~~l~~~~~Di~~~~ 466 (753)
..+.+.++|..|++|++..+
T Consensus 41 ~~~~l~~al~~G~iDia~~~ 60 (291)
T 2nxo_A 41 TPEKLSEQLVRGDLDIGPVT 60 (291)
T ss_dssp CHHHHHHHHHTTSCSEEEEE
T ss_pred CHHHHHHHHHcCCCCEeehh
Confidence 56889999999999998644
No 412
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=27.34 E-value=2.7e+02 Score=30.18 Aligned_cols=89 Identities=12% Similarity=-0.032 Sum_probs=59.6
Q ss_pred CeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh----HHHHHHHH
Q 037761 95 WHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT----ALASRLFA 170 (753)
Q Consensus 95 w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~----~~~~~~~~ 170 (753)
-.+|.+.....+.-.-....+...++.+|.+|..--. . .....++..+++.++++|.+.+.. ..+..+++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~---~---vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~ 171 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGV---M---VPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAK 171 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCS---S---BCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCC---C---CCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHH
Confidence 3466666666665566677788889999999865422 1 133445666667789999998753 35566788
Q ss_pred HHHHcCCCCCCEEEEEcCccc
Q 037761 171 LVAKNGMMSKGYTWIVTACLS 191 (753)
Q Consensus 171 ~a~~~g~~~~~~~wi~~~~~~ 191 (753)
++++.|. .-.+++++....
T Consensus 172 ~Lr~~g~--~i~ViVGGa~~~ 190 (579)
T 3bul_A 172 EMERQGF--TIPLLIGGATTS 190 (579)
T ss_dssp HHHHTTC--CSCEEEESTTCC
T ss_pred HHHHcCC--CCeEEEEccccc
Confidence 8888886 345677665443
No 413
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=27.20 E-value=15 Score=40.18 Aligned_cols=107 Identities=8% Similarity=0.044 Sum_probs=59.7
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeee-eeeeEEeecc----C-CCcCCh-hHhhhcCCeEEEecCchHHHHHHHhhCCC
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTAS-LSSILTVDQL----E-PTFADL-KKLRTESHFVGFQSGSFVEDFLVKQLNFS 590 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~-L~s~lt~~~~----~-~~i~s~-~dL~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (753)
|.+..+|++.++|+++++.+.++..+. +++++..+.. . ...... +.+ ++ .+.+......-..+.+.....
T Consensus 73 p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-hviI~G~g~~g~~la~~L~~~ 149 (565)
T 4gx0_A 73 FESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--RG-HILIFGIDPITRTLIRKLESR 149 (565)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC--CS-CEEEESCCHHHHHHHHHTTTT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CC-eEEEECCChHHHHHHHHHHHC
Confidence 888899999999999998888777666 4444422111 1 111111 222 23 344443333333333333333
Q ss_pred CCceecCCCHHHHHHHHhcC-CCCCCeeEEEeccccHHHHHh
Q 037761 591 RNQTRPLSNFGEYKEALSNG-SRKGGVSAIFEEIPYIKVFLK 631 (753)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~g-~~~~~~~a~~~~~~~~~~~~~ 631 (753)
+..+...+..++.++.+.+. . +.++.+|...-+.+.+
T Consensus 150 ~~~vvvid~~~~~~~~~~~~~~----~~~i~Gd~~~~~~L~~ 187 (565)
T 4gx0_A 150 NHLFVVVTDNYDQALHLEEQEG----FKVVYGSPTDAHVLAG 187 (565)
T ss_dssp TCCEEEEESCHHHHHHHHHSCS----SEEEESCTTCHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHhcC----CeEEEeCCCCHHHHHh
Confidence 45566666666667666554 3 6777777655554444
No 414
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=27.12 E-value=4.9 Score=33.79 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=30.8
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEe
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTV 551 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~ 551 (753)
|.+..+|++.+.|+++++.+.+...+.+++.++.
T Consensus 83 P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 83 PVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887644
No 415
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.97 E-value=2.1e+02 Score=22.80 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=37.8
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC--hHHHHHHHHHHHHcC
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN--TALASRLFALVAKNG 176 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~--~~~~~~~~~~a~~~g 176 (753)
...+.+...++..|..+... . +....+..+++..+|+|++-.. ..+...+++++++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~---~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA---E------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEEe---C------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 35567777888888766421 1 3344566677778999998654 335667777777643
No 416
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=26.78 E-value=4.6e+02 Score=25.65 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEEEeeCCcc----------cchHHHHHHHHHhC-C--eEEEEeeccCCCC-chh----h
Q 037761 79 DSLQVKAISAVLQNFSWHEVVLMYEDTNYG----------AGFISFLVDELQEN-D--IRISHMSKIPTSA-EDF----Q 140 (753)
Q Consensus 79 ~~~~~~a~~~~l~~~~w~~vail~~d~~~g----------~~~~~~~~~~~~~~-g--~~v~~~~~~~~~~-~~~----d 140 (753)
+...-...+.-+...|.+.|-+|.-|-.-+ ...+..+.+.+++. | .+|.. ..+|.+. ... |
T Consensus 84 ~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igv-A~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 84 SRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGG-AAYPEGHPESESLEAD 162 (310)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEE-EECTTCCTTSSCHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEE-EeCCCcCCCCCCHHHH
Confidence 344445555556788999999988764322 12344555545554 4 56543 4455321 122 3
Q ss_pred HHHHHHHHhcCCccEEEE--EeChHHHHHHHHHHHHcCCCCC
Q 037761 141 ISKELSKLSTMQTRVFIV--HMNTALASRLFALVAKNGMMSK 180 (753)
Q Consensus 141 ~~~~l~~l~~~~~~vIi~--~~~~~~~~~~~~~a~~~g~~~~ 180 (753)
+.....|+ +.+||.++. +.+.+....++..+++.|+..+
T Consensus 163 ~~~Lk~Kv-~aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vP 203 (310)
T 3apt_A 163 LRHFKAKV-EAGLDFAITQLFFNNAHYFGFLERARRAGIGIP 203 (310)
T ss_dssp HHHHHHHH-HHHCSEEEECCCSCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHH-HcCCCEEEecccCCHHHHHHHHHHHHHcCCCCe
Confidence 33344444 368898885 4567788889999999997543
No 417
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=26.45 E-value=1.8e+02 Score=25.49 Aligned_cols=84 Identities=8% Similarity=0.098 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
+..+....++++.+++.++ +|......+.+.+-+.+...|+.+.... ..+....+.+-+..+-++++++-++
T Consensus 15 GQV~t~W~k~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~s-------ve~ai~~~~~~~~~~~~v~ll~k~p 86 (164)
T 1nrz_A 15 GQVTTVWSKVANAQRIIIC-NDDVFNDEVRRTLLRQAAPPGMKVNVVS-------LEKAVAVYHNPQYQDETVFYLFTNP 86 (164)
T ss_dssp HHHHHHHHHHHTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEEEC-------HHHHHHHHTCGGGTTCEEEEEESSH
T ss_pred hhheeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEEEE-------HHHHHHHHhcccCCCceEEEEECCH
Confidence 4566778889999988544 4555555667777777776787765431 3345455555444677899999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 037761 163 ALASRLFALVAKNGMM 178 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~ 178 (753)
.++..++ +.|..
T Consensus 87 ~d~~~lv----e~Gv~ 98 (164)
T 1nrz_A 87 HDVLTMV----RQGVQ 98 (164)
T ss_dssp HHHHHHH----TTTCC
T ss_pred HHHHHHH----HcCCC
Confidence 9888775 45653
No 418
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=26.34 E-value=1.9e+02 Score=27.78 Aligned_cols=88 Identities=9% Similarity=0.076 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEe--
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHM-- 160 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~-- 160 (753)
...+++....-|...+.+++++. |-.+..+.++..-+..++.+.... +- .+ ++ ++...+..++|.|++..
T Consensus 74 p~~~A~~y~~~GA~~isvltd~~-~f~Gs~~~l~~ir~~v~lPvl~kd-fi--id--~~--qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVVTEQR-RFQGSLDDLDAVRASVSIPVLRKD-FV--VQ--PY--QIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCGG-GHHHHHHHHHHHHHHCSSCEEEES-CC--CS--HH--HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHHHcCCCEEEEecChh-hcCCCHHHHHHHHHhCCCCEEECc-cc--cC--HH--HHHHHHHcCCCEEEEeccc
Confidence 34566777778999999887544 434444455554455666665433 21 11 22 35666678999999853
Q ss_pred -ChHHHHHHHHHHHHcCCC
Q 037761 161 -NTALASRLFALVAKNGMM 178 (753)
Q Consensus 161 -~~~~~~~~~~~a~~~g~~ 178 (753)
...+...++..+++.|+.
T Consensus 146 l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 146 LEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 456778889999998873
No 419
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=26.31 E-value=83 Score=22.59 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=8.1
Q ss_pred HHhhhcccCCCC
Q 037761 740 VNKYLTSQKSPS 751 (753)
Q Consensus 740 ~~~~~~~~~~~~ 751 (753)
.++.++-+|+-|
T Consensus 47 ikrlLsEKKTCQ 58 (70)
T 2klu_A 47 IKRLLSEKKTSQ 58 (70)
T ss_dssp HHHHHHSSSCCC
T ss_pred HHHHHhcccccc
Confidence 577777777643
No 420
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=26.17 E-value=1e+02 Score=28.62 Aligned_cols=71 Identities=10% Similarity=-0.039 Sum_probs=46.6
Q ss_pred cCCeEEEEEEeeCCccc--chHHHHHHHHHhCCeEEEEeeccCC----CCchhhHHHHHHHH-hcCCc-cEEEEEeChH
Q 037761 93 FSWHEVVLMYEDTNYGA--GFISFLVDELQENDIRISHMSKIPT----SAEDFQISKELSKL-STMQT-RVFIVHMNTA 163 (753)
Q Consensus 93 ~~w~~vail~~d~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~----~~~~~d~~~~l~~l-~~~~~-~vIi~~~~~~ 163 (753)
+.-.+++++-..+.-|. ...+.+.+.|++.|.+|...-.... ..+-+|+...+.+. .+..+ +.|++|+.+.
T Consensus 17 ~~~mkiali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGTGi 95 (231)
T 3c5y_A 17 FQGMKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGTGM 95 (231)
T ss_dssp --CCEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESSSH
T ss_pred hhcceEEEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcH
Confidence 44578999998887777 6778999999999999887755431 11234555555443 33344 5666777664
No 421
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=26.10 E-value=79 Score=30.47 Aligned_cols=81 Identities=10% Similarity=0.035 Sum_probs=52.0
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH-HHHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA-LASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~-~~~~~~~~a 172 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+....... ..+...-...+..+...++|.|++..... .....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-EGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467888753 55777788889999999998776543101 11233445567777778899998875432 223456667
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66664
No 422
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.03 E-value=1.7e+02 Score=23.85 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=37.7
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC--hHHHHHHHHHHHH
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN--TALASRLFALVAK 174 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~--~~~~~~~~~~a~~ 174 (753)
...+.+...+++.|..+... . +....+..+++..+|+|++-.. ..+...+++++++
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV---H------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---C------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEEE---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 45667788888888775322 1 3345566667778999998654 3356677888776
No 423
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=25.83 E-value=2.8e+02 Score=26.31 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC---
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN--- 161 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~--- 161 (753)
.++++.+ -|..-+.++++ ..|-.+..+.+...-+...+.|-....+- + .+ ++...+..+||+|++.+.
T Consensus 68 ~iA~~~~-~GA~aiSVLTd-~~~F~Gs~~~L~~vr~~v~lPvLrKDFii-d----~y--QI~eAr~~GADaILLI~a~L~ 138 (258)
T 4a29_A 68 EYAKFME-RYAVGLSITTE-EKYFNGSYETLRKIASSVSIPILMSDFIV-K----ES--QIDDAYNLGADTVLLIVKILT 138 (258)
T ss_dssp HHHHHHT-TTCSEEEEECC-STTTCCCHHHHHHHHTTCSSCEEEESCCC-S----HH--HHHHHHHHTCSEEEEEGGGSC
T ss_pred HHHHHHh-CCCeEEEEeCC-CCCCCCCHHHHHHHHHhcCCCEeeccccc-c----HH--HHHHHHHcCCCeeehHHhhcC
Confidence 3445554 47788888884 44555666777776666677775554332 1 22 456666789999998765
Q ss_pred hHHHHHHHHHHHHcCCC
Q 037761 162 TALASRLFALVAKNGMM 178 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~~ 178 (753)
..+...+...|.++||.
T Consensus 139 ~~~l~~l~~~A~~lGl~ 155 (258)
T 4a29_A 139 ERELESLLEYARSYGME 155 (258)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 45788899999999984
No 424
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=25.81 E-value=62 Score=32.71 Aligned_cols=73 Identities=8% Similarity=-0.014 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccce---eeeccccccccceE
Q 037761 413 EIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTD---YVEFTLPYSESGVT 489 (753)
Q Consensus 413 dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~---~~~fs~p~~~~~~~ 489 (753)
.++..+++.++++.. .+++.+... .....+.+|.+|++|+++..-.++.+... .+ ...|+..+.++
T Consensus 39 ~~l~~~~~~f~~~~p-~v~i~v~~~---------gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l-~~~pi~~d~lv 107 (350)
T 1pc3_A 39 PLFNLWGPAFHERYP-NVTITAQGT---------GSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGL-MNIALAISAQQ 107 (350)
T ss_dssp HHHHHHHHHHHHHST-TEEEECCBC---------CHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTE-EEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCC-CceEEEecC---------CCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCC-EEeeEEeeeEE
Confidence 455555554443442 245544432 57889999999999999876666554321 11 24688899999
Q ss_pred EEEeccc
Q 037761 490 MLVPVKR 496 (753)
Q Consensus 490 ~~v~~~~ 496 (753)
++++.++
T Consensus 108 vvvn~~~ 114 (350)
T 1pc3_A 108 VNYNLPG 114 (350)
T ss_dssp EEECCTT
T ss_pred EEEeCCc
Confidence 9999775
No 425
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=25.80 E-value=1e+02 Score=29.51 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=46.2
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
++|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC---CCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 578888863 557777888999999999988765422 2234455566777778899999987643
No 426
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.46 E-value=95 Score=29.79 Aligned_cols=65 Identities=8% Similarity=0.131 Sum_probs=46.1
Q ss_pred CeEEEEEEee-CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 95 WHEVVLMYED-TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 95 w~~vail~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
-.+|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......++.+.+.++|.|++....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASS---EENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEEC---TTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 3578888874 556777888899999999988765432 2223344567777778889999887643
No 427
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=25.42 E-value=2.6e+02 Score=22.56 Aligned_cols=55 Identities=4% Similarity=-0.023 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHHHc
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKN 175 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~~~ 175 (753)
...+.+...++..|..+... . +....+..+.+..+|+|+ ....+...+++++++.
T Consensus 29 ~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFMADVT---E------SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEEe---C------CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 35566777777777765421 1 223344555556788888 4444456677777765
No 428
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=25.29 E-value=1.3e+02 Score=29.06 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=29.2
Q ss_pred ehHHHHHHHHHHHH----hcCCccceEEEecCCCCCCCCCChHHHHHHHHcC-cccEEEe
Q 037761 411 CMEIFNATLEIVEE----KLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK-KFDAVVG 465 (753)
Q Consensus 411 ~~dll~~ia~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Di~~~ 465 (753)
.-+.++.+.+.+++ +.|.++++++... ....++..+..| ..|+++.
T Consensus 13 ~~~~~~~~~~~F~~~~~~~~gi~V~v~~~~~---------~s~~l~~~~~~g~~~Dv~~~ 63 (310)
T 1sbp_A 13 TRELYEQYNKAFSAHWKQETGDNVVIDQSHG---------GSGKQATSVINGIEADTVTL 63 (310)
T ss_dssp THHHHHHHHHHHHHHHHHHHSCEEEEEEEES---------CHHHHHHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHHHHHhhhCCCceEEEEeecC---------ChHHHHHHHhcCCCCCEEEe
Confidence 44556666555543 4686666655443 456778888777 7999864
No 429
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=25.16 E-value=70 Score=31.79 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=47.3
Q ss_pred HHHHHcCCeEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 88 AVLQNFSWHEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 88 ~~l~~~~w~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
+-+..-.-+.|+++..+ +.|.....+.+.+.+++.|..+..... .. .......+..+.+.++|.|++...
T Consensus 57 ~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 57 KALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEA---NS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---CS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECC---CC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 33433344679999864 457778889999999999988765532 22 344556777787789999998876
No 430
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=25.13 E-value=4.7e+02 Score=25.18 Aligned_cols=72 Identities=10% Similarity=-0.002 Sum_probs=45.5
Q ss_pred CCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcccccCceEEEEcCCCCCchHhHHHHHHhhhcc
Q 037761 598 SNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQ 674 (753)
Q Consensus 598 ~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G 674 (753)
.+..+....+.+|+ +.+.+.............. ++.++.+-......+++++|+++-.+.--+.|.-|.+..
T Consensus 185 ~~~~~~~~~~~~Ge----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~~~A~~fi~fl~s~e 256 (324)
T 4i1d_A 185 TSGAQSAQLLNDGE----VDMEMAWNGRVSAVAKEGA-KVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVDPV 256 (324)
T ss_dssp CSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHTTC-SEEEEEEEEEEEEEEEEEBTTCTTHHHHHHHHHHHTCHH
T ss_pred cCcchHHHHHhCCC----EEEEecccHHHHHHHhcCC-CeEEEecCeeeeccEEEEECCCCCHHHHHHHHHHHhCHH
Confidence 35667788899998 8777765544443333322 444443221222346889999997777777887777665
No 431
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=24.84 E-value=1.4e+02 Score=28.12 Aligned_cols=112 Identities=9% Similarity=-0.003 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCc-----HHHHHH
Q 037761 11 KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQND-----SLQVKA 85 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~-----~~~~~a 85 (753)
|+..|...++-...-+.=..++|...|. +...+...++|.+.=.-.+....+.+ ...-|..|.. +....-
T Consensus 121 d~~~A~av~~av~~~d~~L~l~~l~gs~----~~~~A~~~Gl~~~~E~FADR~Y~~dG-~LvpR~~~gAvi~d~~~~~~r 195 (250)
T 2dfa_A 121 DRETARAIALAVKAFDPGLPLVVLPGTV----YEEEARKAGLRVVLEAFPERAYLRSG-QLAPRSMPGSWITDPEEAARR 195 (250)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEECTTSH----HHHHHHHTTCCEEEEECTTBCBCTTS-SBCCTTSTTCBCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEEecCChH----HHHHHHHcCCcEEEEEeeccccCCCC-CEecCCCCCCccCCHHHHHHH
Confidence 4555544444443333445667765553 55677889999998665555554322 2344444432 233333
Q ss_pred HHHHHHH-----cCCeEEE------EEEeeCCcccchHHHHHHHHHhCCeEEE
Q 037761 86 ISAVLQN-----FSWHEVV------LMYEDTNYGAGFISFLVDELQENDIRIS 127 (753)
Q Consensus 86 ~~~~l~~-----~~w~~va------il~~d~~~g~~~~~~~~~~~~~~g~~v~ 127 (753)
..+++++ ...+++. .|+.|++-.-++++.+++.+++.|+.|.
T Consensus 196 v~~m~~~g~V~t~~G~~i~i~adTiCvHGD~p~Av~~a~~iR~~L~~~gi~i~ 248 (250)
T 2dfa_A 196 ALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAPEVARAVREALEQAGVEVR 248 (250)
T ss_dssp HHHHHHTSEEEBTTSSEEECCCSEEEEC---CCHHHHHHHHHHHHHTTTCEEC
T ss_pred HHHHHHCCCEEecCCCEeeccCCEEEECCCCHHHHHHHHHHHHHHHHCCCeec
Confidence 4444432 1233333 4677888888999999999999999863
No 432
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=24.77 E-value=59 Score=32.30 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceee-eccccccccceEEEE
Q 037761 414 IFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYV-EFTLPYSESGVTMLV 492 (753)
Q Consensus 414 ll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~-~fs~p~~~~~~~~~v 492 (753)
++..+.+.+++.-+ +++.+... .....+.+|.+|++|+++.+-.++.+..... -...|+..+.+++++
T Consensus 15 ~l~~~~~~f~~~p~--v~i~v~~~---------gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv 83 (321)
T 1ixh_A 15 VYAKWADTYQKETG--NKVNYQGI---------GSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAV 83 (321)
T ss_dssp HHHHHHHHHHHHHC--CEEEEEEC---------CHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCC--ceEEEecC---------CCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEE
Confidence 44445553333444 45555543 6788999999999999987666554432100 124688899999999
Q ss_pred ecccC
Q 037761 493 PVKRD 497 (753)
Q Consensus 493 ~~~~~ 497 (753)
+.++.
T Consensus 84 ~~~~~ 88 (321)
T 1ixh_A 84 NIPGL 88 (321)
T ss_dssp CCTTC
T ss_pred eCCCC
Confidence 97643
No 433
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=24.67 E-value=1.1e+02 Score=28.58 Aligned_cols=63 Identities=8% Similarity=0.008 Sum_probs=45.1
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
+.|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES---QFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC---CCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 468888763 456677888999999999988765432 122334456778888889999998864
No 434
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=24.65 E-value=54 Score=32.50 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=38.3
Q ss_pred CCCChHHHH-HHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEe
Q 037761 8 KQFKDCGKL-ILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIIS 56 (753)
Q Consensus 8 d~~~~~~a~-~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is 56 (753)
|=|+..+-. .++++|..+-+++.|||+..|+.+.-+..++...+.|..-
T Consensus 207 tIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~ 256 (328)
T 3szu_A 207 DICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFL 256 (328)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEE
T ss_pred CcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEE
Confidence 446654444 4556677778899999999999999999999999988443
No 435
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=24.23 E-value=1.8e+02 Score=25.60 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh
Q 037761 83 VKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT 162 (753)
Q Consensus 83 ~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~ 162 (753)
+..+..+.++++.+++.++ +|......+.+.+-+.+...|+.+.... ..+....+.+-+..+-++++++-++
T Consensus 18 GQV~t~W~~~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~s-------ve~ai~~~~~~~~~~~~v~ll~k~p 89 (165)
T 1vsq_C 18 GQVATRWTKETNVSRIIVV-SDEVAADTVRKTLLTQVAPPGVTAHVVD-------VAKMIRVYNNPKYAGERVMLLFTNP 89 (165)
T ss_dssp TTHHHHHHHHTTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEEEC-------HHHHHHHHTCGGGTTCEEEEEESSH
T ss_pred hheeeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEEEE-------HHHHHHHHhccccCCcEEEEEECCH
Confidence 4556678899999988544 4555555667777777766787765431 3345455555444677899999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 037761 163 ALASRLFALVAKNGMM 178 (753)
Q Consensus 163 ~~~~~~~~~a~~~g~~ 178 (753)
.++..++ +.|..
T Consensus 90 ~d~~~lv----e~Gv~ 101 (165)
T 1vsq_C 90 TDVERLV----EGGVK 101 (165)
T ss_dssp HHHHHHH----HTTCC
T ss_pred HHHHHHH----HcCCC
Confidence 9888775 45653
No 436
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=24.18 E-value=1.1e+02 Score=29.29 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhcCCccceEEEecCCCCCCCCCChHHHHHHHHcCcccEEEeeeeeecccceeeeccccccccceEEE
Q 037761 412 MEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTML 491 (753)
Q Consensus 412 ~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~ 491 (753)
.-+++.+++..++... .+++.+... -..+-+.++..|++||+..+-.++.+-.+.+ ...|+..++++++
T Consensus 167 ~p~~~~~ae~f~~~~p-~~~v~~~~~---------GSg~G~~~~~~g~~di~~ssr~l~~~e~~~~-~~~~va~d~iavv 235 (265)
T 4h1x_A 167 SSLMEKLAEAYKKENP-EVTIDITSN---------GSSAGITAVKEKTADIGMVSRELTPEEGKSL-THDAIALDGIAVV 235 (265)
T ss_dssp HHHHHHHHHHHHHHCT-EEEEEEEES---------CHHHHHHHHHHTSCSEEEESSCCCHHHHTTC-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCC-CceeeEecC---------CcHHHHHHHHcCCCceeeccccCChHHHcCC-eEeeEEEEeEEEE
Confidence 3456666665543443 456666553 3556689999999999987766665332222 1357889999999
Q ss_pred EecccCC
Q 037761 492 VPVKRDN 498 (753)
Q Consensus 492 v~~~~~~ 498 (753)
+.++++.
T Consensus 236 vn~~n~~ 242 (265)
T 4h1x_A 236 VNNDNKA 242 (265)
T ss_dssp ECTTCCC
T ss_pred ECCCCCc
Confidence 9977653
No 437
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=24.12 E-value=2e+02 Score=28.18 Aligned_cols=80 Identities=9% Similarity=0.101 Sum_probs=47.8
Q ss_pred EEEEEEeeCC----cccchHHHHHHHHHh-------CCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHH
Q 037761 97 EVVLMYEDTN----YGAGFISFLVDELQE-------NDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALA 165 (753)
Q Consensus 97 ~vail~~d~~----~g~~~~~~~~~~~~~-------~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~ 165 (753)
+|+++...+. +|....+.+..++++ .|..+..... +...+...-...+.++.+.++++|+........
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~-d~~~~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 82 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEY-DDACDPKQAVAVANKIVNDGIKYVIGHLCSSST 82 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEE-ECTTCHHHHHHHHHHHHHTTCCEEECCSSHHHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe-CCCCCHHHHHHHHHHHHhCCCCEEEcCCCcHHH
Confidence 6788887542 466677777777776 5544332221 112223344456667766788988765555555
Q ss_pred HHHHHHHHHcCC
Q 037761 166 SRLFALVAKNGM 177 (753)
Q Consensus 166 ~~~~~~a~~~g~ 177 (753)
..+...+.+.++
T Consensus 83 ~~~~~~~~~~~i 94 (346)
T 1usg_A 83 QPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 556666666664
No 438
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=24.03 E-value=4.9e+02 Score=26.39 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=37.8
Q ss_pred CeEEEEEEeeCCcc--cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC------hHHHH
Q 037761 95 WHEVVLMYEDTNYG--AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN------TALAS 166 (753)
Q Consensus 95 w~~vail~~d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~------~~~~~ 166 (753)
.+++.|+|... .| ...++.+.+.+++.|.++..... . +.+.......+. .+|.|++.++ ...+.
T Consensus 256 ~~kv~iiy~S~-~GnT~~la~~i~~~l~~~g~~v~~~~l-~----~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k 327 (414)
T 2q9u_A 256 QKKVTVVLDSM-YGTTHRMALALLDGARSTGCETVLLEM-T----SSDITKVALHTY--DSGAVAFASPTLNNTMMPSVA 327 (414)
T ss_dssp CSEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEEG-G----GCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHH
T ss_pred CCeEEEEEECC-CchHHHHHHHHHHHHHhCCCeEEEEEc-C----cCCHHHHHHHHH--hCCEEEEEcCccCcCchHHHH
Confidence 45777776432 23 34556666666666655433321 1 222333344443 3566666654 23566
Q ss_pred HHHHHHHHcC
Q 037761 167 RLFALVAKNG 176 (753)
Q Consensus 167 ~~~~~a~~~g 176 (753)
.++..+....
T Consensus 328 ~fld~l~~~~ 337 (414)
T 2q9u_A 328 AALNYVRGLT 337 (414)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 6666655433
No 439
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=23.97 E-value=3.9e+02 Score=24.74 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHhcCC--eEEEEcCCCCCcHHHHHHhhccCCccEEee---cCC---------CC----CCCCCCCCc
Q 037761 10 FKDCGKLILAVDLLKKFQ--VQAIIGPQIPAAAPFLVELGEKAQVPIISF---FET---------SP----ALSPTEHPF 71 (753)
Q Consensus 10 ~~~~~a~~~a~~Li~~~~--V~aviG~~~s~~~~av~~i~~~~~vP~is~---~a~---------~~----~l~~~~~~~ 71 (753)
.+.++|+..+++....-. |.+=+|........-++.++...+=.+|.- ++. .. ..++.+-|-
T Consensus 48 ~tve~av~~mk~y~~~~~~avSVGLGaGDp~Q~~~Va~Ia~~~~P~HVNQvFtgag~t~~~L~~~~T~VNaLvsPTG~~G 127 (249)
T 3m0z_A 48 PDVASAVVDMRDYAKLIDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVATSRALLGQNETVVNGLVSPTGTPG 127 (249)
T ss_dssp SSHHHHHHHHHHHHHHTTTCEEEECSSSCGGGHHHHHHHHHHHCCSEECCBGGGHHHHHHHHTSSCSEEEEEEBCCSSTT
T ss_pred CCHHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHHhcCCCcccccccchHHHHHhccCCCeEEEEEEcCCCccc
Confidence 567788888888766533 556667777888888888887665555421 110 00 112333344
Q ss_pred eEEEe--cC------cHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHH
Q 037761 72 FIRVT--QN------DSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISK 143 (753)
Q Consensus 72 ~fr~~--p~------~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~ 143 (753)
+...+ |. ...-.++.+.+++.+|...+-.+--...-..+-..++.+++.++|+-+.-.- +.+-..|..
T Consensus 128 ~VkIsTGp~Ss~~~~~~V~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTG----GIdl~N~~~ 203 (249)
T 3m0z_A 128 MVKISTGPLSSGAADGIVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTG----GIDLENYSE 203 (249)
T ss_dssp EEECCCSTTGGGSSCCEEEHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBS----SCCTTTHHH
T ss_pred eEEeccCccccCCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCC----CccHhhHHH
Confidence 44443 32 2334567788888899888877766666566667778888888888332222 233457777
Q ss_pred HHHHHhcCCccEEEEEe
Q 037761 144 ELSKLSTMQTRVFIVHM 160 (753)
Q Consensus 144 ~l~~l~~~~~~vIi~~~ 160 (753)
+++-..+.++.-|+-..
T Consensus 204 I~~i~l~aGv~~viPHI 220 (249)
T 3m0z_A 204 ILKIALDAGVSKIIPHI 220 (249)
T ss_dssp HHHHHHHHTCSCBCCBC
T ss_pred HHHHHHHcCCCeecccc
Confidence 77777776666665433
No 440
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=23.91 E-value=2.5e+02 Score=22.86 Aligned_cols=56 Identities=5% Similarity=-0.005 Sum_probs=39.7
Q ss_pred chHHHHHHHHHh-CCeEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeC---hHHHHHHHHHHHH
Q 037761 110 GFISFLVDELQE-NDIRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMN---TALASRLFALVAK 174 (753)
Q Consensus 110 ~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~---~~~~~~~~~~a~~ 174 (753)
...+.+...+++ .|..+... . +....+..+++ ..+|+|++-.. ..+...+++++++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~---~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV---E------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE---C------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE---C------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 356677888888 78776522 1 34456777777 88999998765 4467778888887
No 441
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=23.87 E-value=3.3e+02 Score=23.55 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHhcCC--ccEEEEEeC------hHHHHHHHHHHHHcCC
Q 037761 138 DFQISKELSKLSTMQ--TRVFIVHMN------TALASRLFALVAKNGM 177 (753)
Q Consensus 138 ~~d~~~~l~~l~~~~--~~vIi~~~~------~~~~~~~~~~a~~~g~ 177 (753)
-..+...|..+++.. .|+|++.-- ..+...++..+.+.|.
T Consensus 59 Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv 106 (167)
T 3guv_A 59 RIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGV 106 (167)
T ss_dssp CHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCCC
Confidence 357777777777665 677776532 3466667777777664
No 442
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.85 E-value=3.5e+02 Score=23.24 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEEEEEeeCCcc--cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC-----hHHHHHHH
Q 037761 97 EVVLMYEDTNYG--AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN-----TALASRLF 169 (753)
Q Consensus 97 ~vail~~d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~-----~~~~~~~~ 169 (753)
++.|+| .+.+| +..++.+.+.+++.|+++.....-... ..++...+.+ .|.|++.++ .+. ..++
T Consensus 2 kv~IvY-~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~-----~d~ii~Gspty~g~~p~-~~fl 72 (161)
T 3hly_A 2 SVLIGY-LSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVD--PQELIEAVSS-----ARGIVLGTPPSQPSEAV-ATAL 72 (161)
T ss_dssp CEEEEE-CTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCC--HHHHHHHHHH-----CSEEEEECCBSSCCHHH-HHHH
T ss_pred EEEEEE-ECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC--HHHHHHHHHh-----CCEEEEEcCCcCCchhH-HHHH
Q ss_pred HHHHHcCCCCCCEEEEEcCccc
Q 037761 170 ALVAKNGMMSKGYTWIVTACLS 191 (753)
Q Consensus 170 ~~a~~~g~~~~~~~wi~~~~~~ 191 (753)
..+....+.......+++.+|.
T Consensus 73 ~~l~~~~l~gk~v~~fgs~g~~ 94 (161)
T 3hly_A 73 STIFAAAHNKQAIGLFDSYGGD 94 (161)
T ss_dssp HHHHHHCCTTSEEEEECCCCSS
T ss_pred HHHHhhhhCCCEEEEEEcCCCC
No 443
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=23.78 E-value=1.5e+02 Score=28.77 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=44.4
Q ss_pred CeEEEEEEe-eCCcccchHHHHHHHHHhCCe------EEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 95 WHEVVLMYE-DTNYGAGFISFLVDELQENDI------RISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 95 w~~vail~~-d~~~g~~~~~~~~~~~~~~g~------~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
-+.|+++.. .++|..+..+.+.+.+.+.|. .+..... ..+.......++++.+.++|.|++.+.
T Consensus 8 t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~---~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTA---QGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 367888743 355667788999999999987 3332221 223445566788888899999988764
No 444
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=23.61 E-value=1.6e+02 Score=29.39 Aligned_cols=90 Identities=9% Similarity=0.090 Sum_probs=62.8
Q ss_pred EecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCcc
Q 037761 75 VTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTR 154 (753)
Q Consensus 75 ~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~ 154 (753)
..|+....++.+.++++..+-+.|.|.++.+. ..+.+++.++..++.++.. .+. .+++....-+.|+
T Consensus 260 ClPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~~---~pe------~a~ID~~I~~~A~ 326 (362)
T 3zy2_A 260 CSPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHRQ---EPD------DMYTSLAIMGRAD 326 (362)
T ss_dssp HSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEECC---SSC------CHHHHHHHHHHSS
T ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEEe---CCc------hhHHHHHHHHhCC
Confidence 35888999999999999889999988875433 4678888888777776533 222 3355555556789
Q ss_pred EEEEEeChHHHHHHHHHHHHcCC
Q 037761 155 VFIVHMNTALASRLFALVAKNGM 177 (753)
Q Consensus 155 vIi~~~~~~~~~~~~~~a~~~g~ 177 (753)
..|--+...-...+.++=...|+
T Consensus 327 ~FIGN~~SSFSa~I~rERdi~G~ 349 (362)
T 3zy2_A 327 LFVGNCVSTFSHIVKRERDHAGQ 349 (362)
T ss_dssp EEEECTTCHHHHHHHHHHHHSSS
T ss_pred EeecCccccccHHHHHHHHhcCC
Confidence 88877777766666665444563
No 445
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=23.52 E-value=5e+02 Score=25.32 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=57.9
Q ss_pred eEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecC-------cHHHHHHHHHHHHHcCC-----
Q 037761 28 VQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQN-------DSLQVKAISAVLQNFSW----- 95 (753)
Q Consensus 28 V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~-------~~~~~~a~~~~l~~~~w----- 95 (753)
+.-++||...+...+++.++...++=.+........ ...-+|.|+.-. ....-.++.++.+.++.
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~---~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l~ 100 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDN---LSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRIT 100 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEET---TTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecC---CCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeeec
Confidence 667889999999999999999888877765443211 112367777422 12333444445555542
Q ss_pred -----eEEEEEEeeCCcccchHHHHHHHHHhC--CeEEEEe
Q 037761 96 -----HEVVLMYEDTNYGAGFISFLVDELQEN--DIRISHM 129 (753)
Q Consensus 96 -----~~vail~~d~~~g~~~~~~~~~~~~~~--g~~v~~~ 129 (753)
+|++++.+.. |. ..+++-...+.. +.+|+.+
T Consensus 101 ~~~~~~ri~vl~Sg~--g~-nl~~ll~~~~~g~l~~~I~~V 138 (302)
T 3o1l_A 101 DSAQKKRVVLMASRE--SH-CLADLLHRWHSDELDCDIACV 138 (302)
T ss_dssp ETTSCCEEEEEECSC--CH-HHHHHHHHHHTTCSCSEEEEE
T ss_pred ccCCCcEEEEEEeCC--ch-hHHHHHHHHHCCCCCcEEEEE
Confidence 4788888654 43 345555555443 3455544
No 446
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=23.50 E-value=3.9e+02 Score=26.39 Aligned_cols=76 Identities=11% Similarity=0.000 Sum_probs=47.5
Q ss_pred CeEEEEEEeeCCc---ccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHH
Q 037761 95 WHEVVLMYEDTNY---GAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFAL 171 (753)
Q Consensus 95 w~~vail~~d~~~---g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~ 171 (753)
.+++.+|+.-..- +....+.+.+.+++.|+++.....-. ..+......++...++|+|++++--......++.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~----~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~ 99 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK----IGDATLEAERAMHENYDVLIAAGGDGTLNEVVNG 99 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS----TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC----cchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHH
Confidence 4788888843221 12345678889999998876554322 1244455556656678888877765556666666
Q ss_pred HHH
Q 037761 172 VAK 174 (753)
Q Consensus 172 a~~ 174 (753)
+.+
T Consensus 100 l~~ 102 (337)
T 2qv7_A 100 IAE 102 (337)
T ss_dssp HTT
T ss_pred HHh
Confidence 633
No 447
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=23.50 E-value=1.7e+02 Score=32.05 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=55.8
Q ss_pred EEEEEEeeCC-cccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChH----HHHHHHHH
Q 037761 97 EVVLMYEDTN-YGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTA----LASRLFAL 171 (753)
Q Consensus 97 ~vail~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~----~~~~~~~~ 171 (753)
++.+-.-..+ .-....+.+...++..|++|.....+ . . ...+..+++.++++|.+|+... .+..++++
T Consensus 511 kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~-----~-t-ee~v~aa~e~~adiv~lSsl~~~~~~~~~~v~~~ 583 (637)
T 1req_B 511 KVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGG-----T-T-AEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKA 583 (637)
T ss_dssp BCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECC-----C-H-HHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHH
T ss_pred hhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCC-----C-C-HHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHH
Confidence 4444443444 33344566777899999988655322 2 2 6678888888999999998754 55667888
Q ss_pred HHHcCCCCCCEEEEEcC
Q 037761 172 VAKNGMMSKGYTWIVTA 188 (753)
Q Consensus 172 a~~~g~~~~~~~wi~~~ 188 (753)
+++.|+ .++++++.
T Consensus 584 Lk~aG~---~~V~vgG~ 597 (637)
T 1req_B 584 LKAAGA---KALYLSGA 597 (637)
T ss_dssp HHHTTC---SEEEEESC
T ss_pred HHhCCC---CeEEEeCC
Confidence 888896 45777764
No 448
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=23.36 E-value=4.8e+02 Score=25.23 Aligned_cols=76 Identities=11% Similarity=-0.077 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCCCCeeEEEeccccHHHHHhcCCCCcEEeCcc--cccCceEEEEcCCCCCchHhHHHHHHhhhcchHHH
Q 037761 601 GEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPI--YRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMD 678 (753)
Q Consensus 601 ~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~ 678 (753)
.+....+.+|+ +...+..........+... ++..+-+. ......+++++++++-.+.--+.|..|.+.. ...
T Consensus 192 ~~~~~~~~~G~----~~~~~~~~~~~~~~~~~~~-~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e-~~~ 265 (330)
T 4eqb_A 192 DEMKGYMIQNN----VAIGVTFSGEASQMLEKNE-NLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPE-NAL 265 (330)
T ss_dssp TTHHHHHHTTC----CSEEEEEHHHHHHHHHHCT-TEEEECCTTCEEEEEEEEBCBTTCSCHHHHHHHHHHHHSHH-HHH
T ss_pred HHHHHHHhcCC----EEEEEechHHHHHHHhhCC-CeEEEeCCCccceEEEEEEEECCCCCHHHHHHHHHHhcCHH-HHH
Confidence 46677888888 7777765544444443332 44443211 1111235788999998888888888877666 455
Q ss_pred HHHH
Q 037761 679 RIEK 682 (753)
Q Consensus 679 ~~~~ 682 (753)
.+.+
T Consensus 266 ~~~~ 269 (330)
T 4eqb_A 266 QNAE 269 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 449
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.29 E-value=1.2e+02 Score=29.21 Aligned_cols=65 Identities=6% Similarity=-0.017 Sum_probs=44.8
Q ss_pred eEEEEEEe-eCCcccchHHHHHHHHHhCCe---EEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 96 HEVVLMYE-DTNYGAGFISFLVDELQENDI---RISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~-d~~~g~~~~~~~~~~~~~~g~---~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
+.|+++.. +++|-.+..+.+++.+.+.|. .+..... ....+.......++++.+.++|.|++.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 57888832 355777888999999999987 5432211 11223445667888888899999998764
No 450
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=23.17 E-value=1.1e+02 Score=30.65 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=50.9
Q ss_pred CeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCc---cEEEEEeChH--HHHHHH
Q 037761 95 WHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQT---RVFIVHMNTA--LASRLF 169 (753)
Q Consensus 95 w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~---~vIi~~~~~~--~~~~~~ 169 (753)
.+++.|+++...+. ...+.+.+.+++.++.+........+.+.......+..+++.++ |+|+..|.+. |+..++
T Consensus 26 ~~~~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~ 104 (343)
T 3clh_A 26 KQKALIISDSIVAG-LHLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFA 104 (343)
T ss_dssp SSCEEEEEEHHHHT-TTHHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHH
T ss_pred CCEEEEEECCcHHH-HHHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHH
Confidence 37888888654433 35677777777666553322222222245677778888888888 9999887654 667776
Q ss_pred HHHHHcC
Q 037761 170 ALVAKNG 176 (753)
Q Consensus 170 ~~a~~~g 176 (753)
......|
T Consensus 105 A~~~~rg 111 (343)
T 3clh_A 105 SSIYFRG 111 (343)
T ss_dssp HHHBTTC
T ss_pred HHHhccC
Confidence 6544434
No 451
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=23.05 E-value=83 Score=30.45 Aligned_cols=80 Identities=8% Similarity=0.073 Sum_probs=54.2
Q ss_pred eEEEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHH-HHHHHHHH
Q 037761 96 HEVVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTAL-ASRLFALV 172 (753)
Q Consensus 96 ~~vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~-~~~~~~~a 172 (753)
.+|+++..+ +.|.....+.+.+.+++.|..+.....-. ..+.......+..+.+.++|.|++.....+ ....++.+
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 578888864 55777888999999999998877654321 113345566777777788999998765433 23346666
Q ss_pred HHcCC
Q 037761 173 AKNGM 177 (753)
Q Consensus 173 ~~~g~ 177 (753)
. .|+
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 5 664
No 452
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.59 E-value=3.1e+02 Score=22.18 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=36.8
Q ss_pred chHHHHHHHHHh-CCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh--HHHHHHHHHHHHc
Q 037761 110 GFISFLVDELQE-NDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT--ALASRLFALVAKN 175 (753)
Q Consensus 110 ~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~--~~~~~~~~~a~~~ 175 (753)
...+.+...++. .|..++... . +....+..+++..+|+|++-... .+...+++++++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~--~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKIA--Y------NPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE--C------SHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEEE--C------CHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 456677777887 787632221 1 23345566666789999988653 3566778888774
No 453
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=22.47 E-value=2.6e+02 Score=23.21 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=38.4
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC--hHHHHHHHHHHHHcC
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN--TALASRLFALVAKNG 176 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~--~~~~~~~~~~a~~~g 176 (753)
...+.+...+++.|..+... . +....+..+++..+|+|++-.. ..+...+++++++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHFA---R------DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEEE---S------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEEE---C------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 45677888888888665422 1 3344566666778999998765 335666777777754
No 454
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.41 E-value=2.7e+02 Score=22.58 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=37.5
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh--HHHHHHHHHHHHc
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT--ALASRLFALVAKN 175 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~--~~~~~~~~~a~~~ 175 (753)
...+.+...++..|..+... . +....+..+.+..+|+|++-... .+...+++++++.
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~ 73 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRRA---A------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQH 73 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCEEEEe---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 35667778888888765421 1 23345666667789999987653 3566777777764
No 455
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=22.12 E-value=54 Score=31.99 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=39.3
Q ss_pred CCCChHHHHH-HHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEee
Q 037761 8 KQFKDCGKLI-LAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISF 57 (753)
Q Consensus 8 d~~~~~~a~~-~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~ 57 (753)
|=|+..+-.+ ++++|..+-+++.|||+..|+.+.-+..++...+.|..-.
T Consensus 191 tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~I 241 (297)
T 3dnf_A 191 TICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHI 241 (297)
T ss_dssp CCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEE
T ss_pred CccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEe
Confidence 4577665554 5566677778999999999999999999999998885443
No 456
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.91 E-value=3.9e+02 Score=23.12 Aligned_cols=92 Identities=9% Similarity=-0.033 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeec--cCC--CCchhhHHHHHHHHh-cCCccEEEEE
Q 037761 85 AISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSK--IPT--SAEDFQISKELSKLS-TMQTRVFIVH 159 (753)
Q Consensus 85 a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~--~~~--~~~~~d~~~~l~~l~-~~~~~vIi~~ 159 (753)
.+.+.+...|--..+..|. ...+....+.+.+.+...|+++...-. +.. .-+..|..-.+.-+. ....|.++++
T Consensus 37 ~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLv 115 (165)
T 2qip_A 37 QFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILV 115 (165)
T ss_dssp HHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEE
T ss_pred HHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEE
Confidence 4555554444333344452 222334567788999999998764321 111 123345444444332 2456888877
Q ss_pred eChHHHHHHHHHHHHc-CC
Q 037761 160 MNTALASRLFALVAKN-GM 177 (753)
Q Consensus 160 ~~~~~~~~~~~~a~~~-g~ 177 (753)
+.-.+...+++.+++. |.
T Consensus 116 SgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 116 SGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp CCCGGGHHHHHHHHHHHCC
T ss_pred ECChhHHHHHHHHHHHcCc
Confidence 7666788899999994 83
No 457
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=21.74 E-value=2.5e+02 Score=25.76 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=49.8
Q ss_pred HHHHHHHHHHH--cCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHH-HHHHHHhcCCccEEEE
Q 037761 82 QVKAISAVLQN--FSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQIS-KELSKLSTMQTRVFIV 158 (753)
Q Consensus 82 ~~~a~~~~l~~--~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~-~~l~~l~~~~~~vIi~ 158 (753)
-..++++..+. ++. .|++|.+|..- ....+.+++.|+.+.....-.. .+..++. ..+..+++.++|+|++
T Consensus 15 nl~ali~~~~~~~l~~-eI~~Visn~~~-----a~v~~~A~~~gIp~~~~~~~~~-~~r~~~d~~~~~~l~~~~~Dliv~ 87 (211)
T 3p9x_A 15 NAEAIIQSQKAGQLPC-EVALLITDKPG-----AKVVERVKVHEIPVCALDPKTY-PSKEAYEIEVVQQLKEKQIDFVVL 87 (211)
T ss_dssp HHHHHHHHHHTTCCSS-EEEEEEESCSS-----SHHHHHHHTTTCCEEECCGGGS-SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCCc-EEEEEEECCCC-----cHHHHHHHHcCCCEEEeChhhc-CchhhhHHHHHHHHHhcCCCEEEE
Confidence 34566665543 233 56666666432 1466778889988754332111 1223443 3567777889999999
Q ss_pred EeChHHHHHHHHHHHHcC
Q 037761 159 HMNTALASRLFALVAKNG 176 (753)
Q Consensus 159 ~~~~~~~~~~~~~a~~~g 176 (753)
++++.-...-+.++...|
T Consensus 88 agy~~Il~~~~l~~~~~~ 105 (211)
T 3p9x_A 88 AGYMRLVGPTLLGAYEGR 105 (211)
T ss_dssp SSCCSCCCHHHHHHHTTS
T ss_pred eCchhhcCHHHHhhccCC
Confidence 998764443333333333
No 458
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=21.73 E-value=2.6e+02 Score=24.52 Aligned_cols=93 Identities=6% Similarity=-0.011 Sum_probs=53.3
Q ss_pred cCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhc----CC
Q 037761 77 QNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLST----MQ 152 (753)
Q Consensus 77 p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~----~~ 152 (753)
+.-..++..+++.+...+..--.|+.+.-.=..+.++.+.+. .....+.....+.+ ..+....+..+.+ ..
T Consensus 27 ~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~Ra~qTa~~l~~~--~~~~~~~~~~~L~~---~~~~~~~~~~l~~~~~~~~ 101 (172)
T 3f2i_A 27 QEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLAS--GLSCQLEESNHLAP---NGNIFNWLDYWLKPKNFPE 101 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHT--TSCSCEEECGGGST---TCCHHHHHHHTHHHHCCCT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHhc--CCCCCeEECcccCC---ccCHHHHHHHHHHhccCCC
Confidence 445678888999987755433344444333223333333332 12223433333322 2355555555542 56
Q ss_pred ccEEEEEeChHHHHHHHHHHHH
Q 037761 153 TRVFIVHMNTALASRLFALVAK 174 (753)
Q Consensus 153 ~~vIi~~~~~~~~~~~~~~a~~ 174 (753)
.+.+++++..+....++..+..
T Consensus 102 ~~~vllVgH~P~l~~l~~~L~~ 123 (172)
T 3f2i_A 102 NAQIAIVGHEPCLSNWTEILLW 123 (172)
T ss_dssp TCEEEEEECTTHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHHHhc
Confidence 7889999999988888887765
No 459
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=21.64 E-value=1.7e+02 Score=30.26 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=45.3
Q ss_pred eEEEEEEeeCCc---------c---cchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC
Q 037761 96 HEVVLMYEDTNY---------G---AGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN 161 (753)
Q Consensus 96 ~~vail~~d~~~---------g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~ 161 (753)
.+|+||...|+- | ......+...+++.|.++.....++++ ...+...+.+..+ ++|+|+..+-
T Consensus 178 ~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd--~~~i~~al~~a~~-~~DlvittGG 252 (411)
T 1g8l_A 178 VRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDD--PHALRAAFIEADS-QADVVISSGG 252 (411)
T ss_dssp CEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHH-HCSEEEECSS
T ss_pred CEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHhh-cCCEEEECCC
Confidence 478888875542 2 245567888999999998887777654 4577777776654 6899988764
No 460
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=21.20 E-value=5.7 Score=34.98 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=32.5
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeec
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQ 553 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~ 553 (753)
|.+..+|++.+.|+++++.+.+...+.+++.++...
T Consensus 106 P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 106 PVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998876543
No 461
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=21.13 E-value=18 Score=30.98 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=30.3
Q ss_pred ccccchhhHHHHHHHHHHHhhhceeeeeeeeEE
Q 037761 518 VVKDCSKFVLVIWLWLAFILMQSYTASLSSILT 550 (753)
Q Consensus 518 p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt 550 (753)
|.+..+|++.+.|+++++.+.+...+.+++.+.
T Consensus 62 P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 62 PVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988763
No 462
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=21.00 E-value=3e+02 Score=21.44 Aligned_cols=59 Identities=7% Similarity=0.068 Sum_probs=36.0
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeCh--HHHHHHHHHHHHcC
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNT--ALASRLFALVAKNG 176 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~--~~~~~~~~~a~~~g 176 (753)
.....+...++..|..++... . +....+..+.+..+|+|++-... .+...+++++++.+
T Consensus 13 ~~~~~l~~~l~~~g~~vv~~~--~------~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~ 73 (120)
T 1tmy_A 13 FMRMMLKDIITKAGYEVAGEA--T------NGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID 73 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--S------SHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCcEEEEEE--C------CHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhC
Confidence 355677777887887753221 1 22334455555678999987653 34566777777654
No 463
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=20.97 E-value=2.6e+02 Score=27.71 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=52.7
Q ss_pred CCeEEEEEEeeC----CcccchHHHHHHHHHhCC-------eEEEEeeccCCCCchhhHHHHHHHHhc-CCccEEEEEeC
Q 037761 94 SWHEVVLMYEDT----NYGAGFISFLVDELQEND-------IRISHMSKIPTSAEDFQISKELSKLST-MQTRVFIVHMN 161 (753)
Q Consensus 94 ~w~~vail~~d~----~~g~~~~~~~~~~~~~~g-------~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIi~~~~ 161 (753)
.--+|+++...+ .+|....+.++.++++.| +++... +...+...-...+.++.+ .++++|+....
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~---d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 91 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKV---DDESAPPKATELTTKLIQSEKADVLIGTVH 91 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEE---ECTTCHHHHHHHHHCCCCCSCCSEEEECSS
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEe---cCCCCHHHHHHHHHHHHhcCCceEEEcCCc
Confidence 456899998754 367777888888888876 333322 212223344456666665 48888887766
Q ss_pred hHHHHHHHHHHHHcCC
Q 037761 162 TALASRLFALVAKNGM 177 (753)
Q Consensus 162 ~~~~~~~~~~a~~~g~ 177 (753)
......+...+.+.++
T Consensus 92 s~~~~~~~~~~~~~~i 107 (375)
T 4evq_A 92 SGVAMAMVKIAREDGI 107 (375)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHcCc
Confidence 6666667777777775
No 464
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.53 E-value=3.3e+02 Score=21.74 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=37.6
Q ss_pred chHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeC--hHHHHHHHHHHHHcC
Q 037761 110 GFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMN--TALASRLFALVAKNG 176 (753)
Q Consensus 110 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~--~~~~~~~~~~a~~~g 176 (753)
...+.+...+++.|..+.... .. ..+ .+..+++..+|+|++... ..+...+++++++..
T Consensus 12 ~~~~~l~~~L~~~g~~v~~~~--~~---~~~---a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 12 LAIAAIRNLLIKNDIEILAEL--TE---GGS---AVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQ 72 (134)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE--SS---STT---HHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCcEEEEEc--CC---HHH---HHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcC
Confidence 356778888888886664221 11 112 344555567999999865 335677888888754
No 465
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=20.43 E-value=37 Score=32.53 Aligned_cols=75 Identities=9% Similarity=-0.069 Sum_probs=38.9
Q ss_pred EEEEEee--CCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHHHHHHHc
Q 037761 98 VVLMYED--TNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKN 175 (753)
Q Consensus 98 vail~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~~~a~~~ 175 (753)
|+++..+ ++|.....+.+.+.+++.|..+..... ..+.......+..+.+.++|.|++....... ..++.+.+.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~~~~~ 77 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI---LSLARLKRYLENTTLAYLTDGLILASYDLTE-RFEEGRLPT 77 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC---CSCCCCC---------CCCSEEEEESCCCC-------CCSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCchhhHHHHHHHHHhCCCCEEEEecCCCCH-HHHHHHhhc
Confidence 5677653 557778889999999999988765321 1112233456677777889999988653221 334444444
Q ss_pred C
Q 037761 176 G 176 (753)
Q Consensus 176 g 176 (753)
|
T Consensus 78 ~ 78 (276)
T 2h0a_A 78 E 78 (276)
T ss_dssp S
T ss_pred C
Confidence 4
No 466
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=20.31 E-value=1.3e+02 Score=28.36 Aligned_cols=112 Identities=10% Similarity=0.090 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcH-----HHHHH
Q 037761 11 KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDS-----LQVKA 85 (753)
Q Consensus 11 ~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~-----~~~~a 85 (753)
|+..|...++-...-+.=..++|...|. +...+...++|.+.=.-.+....+.+ ..+-|..|..- ....-
T Consensus 121 d~~~A~av~~av~~~d~~L~l~~l~gs~----~~~~A~~~Gl~~~~E~FADR~Y~~dG-~LvpR~~~gAvi~d~~~~~~r 195 (255)
T 1v6t_A 121 EEDLARAVIEGILDFDKDLILVTLSNSR----VADIAEEMGLKVAHEVFADRAYNPDG-TLVPRGRPGAVIEDKEEIAER 195 (255)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEEETTCH----HHHHHHHHTCCEEEEECTTBCBCTTS-CBCC-----CBCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEEecCChH----HHHHHHHcCCcEEEEEeeccccCCCC-CEecCCCCCCccCCHHHHHHH
Confidence 4555554444443334445667766653 55677889999998766665555433 35666666433 23333
Q ss_pred HHHHHHH-----cCCeEEE------EEEeeCCcccchHHHHHHHHHhCCeEEE
Q 037761 86 ISAVLQN-----FSWHEVV------LMYEDTNYGAGFISFLVDELQENDIRIS 127 (753)
Q Consensus 86 ~~~~l~~-----~~w~~va------il~~d~~~g~~~~~~~~~~~~~~g~~v~ 127 (753)
..+++++ ...+++. .|+.|++-.-++++.+++.+++.|+.|.
T Consensus 196 v~~m~~~g~V~t~~G~~i~i~adTiCvHGD~p~Av~~a~~iR~~L~~~gi~i~ 248 (255)
T 1v6t_A 196 VISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEEEGVKIV 248 (255)
T ss_dssp HHHHHHHSEEECTTSCEEECCCSEEECCCSSHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCCEEecCCCEeeccCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4444433 2334443 3566888788999999999999999874
Done!