Query 037762
Match_columns 93
No_of_seqs 114 out of 1040
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03083 MtN3_slv: Sugar efflu 99.8 4.1E-20 9E-25 114.4 3.3 68 1-71 20-87 (87)
2 KOG1623 Multitransmembrane pro 99.8 1.8E-18 3.8E-23 125.2 7.6 70 1-72 26-95 (243)
3 KOG1623 Multitransmembrane pro 99.3 4E-12 8.6E-17 92.3 5.1 66 2-70 146-211 (243)
4 COG4095 Uncharacterized conser 99.2 1.4E-11 3E-16 76.9 4.6 65 1-68 22-86 (89)
5 PF04193 PQ-loop: PQ loop repe 98.0 5.5E-06 1.2E-10 47.7 3.0 41 1-43 19-59 (61)
6 TIGR00951 2A43 Lysosomal Cysti 96.7 0.0066 1.4E-07 43.5 6.2 33 1-33 21-53 (220)
7 PF03650 MPC: Uncharacterised 96.6 0.0018 4E-08 42.6 2.7 60 9-69 39-98 (119)
8 KOG1589 Uncharacterized conser 96.5 0.0026 5.7E-08 41.4 2.8 60 9-69 43-102 (118)
9 smart00679 CTNS Repeated motif 96.4 0.0025 5.4E-08 32.0 1.7 25 1-25 5-29 (32)
10 TIGR00951 2A43 Lysosomal Cysti 92.7 0.25 5.5E-06 35.4 4.5 64 1-66 156-219 (220)
11 PHA02246 hypothetical protein 87.6 3.3 7.2E-05 28.9 6.4 56 1-58 126-181 (192)
12 KOG3211 Predicted endoplasmic 87.6 0.48 1.1E-05 34.3 2.3 68 1-70 159-226 (230)
13 KOG2913 Predicted membrane pro 87.3 1.4 3.1E-05 32.5 4.7 66 1-69 26-91 (260)
14 PF10688 Imp-YgjV: Bacterial i 79.5 2.5 5.5E-05 28.9 3.1 36 21-59 118-153 (163)
15 COG1845 CyoC Heme/copper-type 78.1 6.3 0.00014 28.2 4.9 50 43-92 73-124 (209)
16 KOG3211 Predicted endoplasmic 69.5 25 0.00055 25.6 6.2 38 1-41 48-85 (230)
17 TIGR02897 QoxC cytochrome aa3 67.2 19 0.0004 25.0 5.1 46 47-92 56-103 (190)
18 PF05602 CLPTM1: Cleft lip and 67.2 6.3 0.00014 30.8 3.0 54 2-58 320-374 (438)
19 COG3952 Predicted membrane pro 62.6 17 0.00037 23.6 3.9 54 8-64 49-102 (113)
20 TIGR00341 conserved hypothetic 62.0 17 0.00036 27.9 4.3 51 17-70 243-293 (325)
21 cd00386 Heme_Cu_Oxidase_III_li 58.0 29 0.00063 23.5 4.7 24 69-92 79-102 (183)
22 PF10688 Imp-YgjV: Bacterial i 57.8 40 0.00088 22.9 5.3 42 47-90 4-46 (163)
23 PRK10663 cytochrome o ubiquino 49.6 58 0.0012 22.9 5.2 47 46-92 69-117 (204)
24 PF07578 LAB_N: Lipid A Biosyn 48.6 23 0.00049 21.4 2.6 38 15-55 28-65 (72)
25 cd02865 Heme_Cu_Oxidase_III_2 46.6 92 0.002 21.2 5.9 48 45-92 51-100 (184)
26 PHA02246 hypothetical protein 45.1 91 0.002 21.8 5.4 38 1-41 22-59 (192)
27 TIGR02842 CyoC cytochrome o ub 45.0 45 0.00097 22.8 4.0 47 46-92 45-93 (180)
28 PF11694 DUF3290: Protein of u 44.8 78 0.0017 21.4 5.1 24 68-91 41-64 (149)
29 MTH00118 COX3 cytochrome c oxi 42.7 71 0.0015 23.4 4.9 47 46-92 130-178 (261)
30 PF04120 Iron_permease: Low af 41.6 1.1E+02 0.0023 20.5 6.3 46 16-65 14-60 (132)
31 cd02864 Heme_Cu_Oxidase_III_1 40.5 1.1E+02 0.0023 21.3 5.4 45 48-92 65-111 (202)
32 PF09815 XK-related: XK-relate 39.1 48 0.001 24.8 3.7 51 19-69 280-331 (332)
33 cd02863 Ubiquinol_oxidase_III 38.3 85 0.0018 21.6 4.6 48 45-92 52-101 (186)
34 PLN02194 cytochrome-c oxidase 36.4 1E+02 0.0023 22.7 5.0 47 46-92 133-181 (265)
35 MTH00039 COX3 cytochrome c oxi 35.9 1.1E+02 0.0025 22.4 5.1 46 47-92 130-177 (260)
36 MTH00075 COX3 cytochrome c oxi 35.8 1.1E+02 0.0023 22.5 5.0 46 47-92 131-178 (261)
37 MTH00052 COX3 cytochrome c oxi 35.0 1.2E+02 0.0025 22.3 5.1 47 46-92 131-179 (262)
38 MTH00189 COX3 cytochrome c oxi 34.7 1E+02 0.0022 22.6 4.7 47 46-92 129-177 (260)
39 PF01102 Glycophorin_A: Glycop 34.7 27 0.00059 23.0 1.5 25 47-71 67-91 (122)
40 MTH00141 COX3 cytochrome c oxi 34.2 1.6E+02 0.0035 21.4 5.7 47 46-92 128-176 (259)
41 KOG1590 Uncharacterized conser 33.6 89 0.0019 20.8 3.8 55 9-65 47-102 (132)
42 MTH00099 COX3 cytochrome c oxi 32.3 1E+02 0.0022 22.6 4.4 46 47-92 131-178 (261)
43 MTH00130 COX3 cytochrome c oxi 31.6 1.7E+02 0.0036 21.5 5.4 47 46-92 130-178 (261)
44 PF01350 Flavi_NS4A: Flaviviru 31.6 1.7E+02 0.0037 19.9 6.0 67 6-83 68-138 (144)
45 MTH00024 COX3 cytochrome c oxi 31.2 1.6E+02 0.0034 21.6 5.2 46 47-92 131-178 (261)
46 PF04238 DUF420: Protein of un 31.2 1.6E+02 0.0035 19.5 4.9 12 79-90 40-51 (133)
47 TIGR03052 PS_I_psaI photosyste 30.7 73 0.0016 16.1 2.4 15 78-92 13-27 (31)
48 KOG2913 Predicted membrane pro 30.2 22 0.00049 26.3 0.6 31 1-34 183-213 (260)
49 MTH00083 COX3 cytochrome c oxi 30.2 1.4E+02 0.003 21.9 4.7 47 46-92 126-173 (256)
50 MTH00219 COX3 cytochrome c oxi 29.4 1.6E+02 0.0035 21.6 5.0 47 46-92 131-179 (262)
51 PRK09917 hypothetical protein; 29.0 1E+02 0.0023 20.9 3.7 44 20-65 36-79 (157)
52 KOG3339 Predicted glycosyltran 28.9 29 0.00062 25.0 0.9 57 4-64 98-154 (211)
53 PF11812 DUF3333: Domain of un 28.4 67 0.0015 21.9 2.7 21 70-90 12-32 (155)
54 KOG3145 Cystine transporter Cy 27.6 2.1E+02 0.0046 22.2 5.4 19 1-19 141-159 (372)
55 PF13687 DUF4153: Domain of un 27.0 45 0.00097 23.4 1.7 27 32-61 150-176 (217)
56 COG1808 Predicted membrane pro 26.9 1.6E+02 0.0036 22.6 4.8 52 16-70 153-204 (334)
57 PF00892 EamA: EamA-like trans 26.5 1.5E+02 0.0032 17.5 4.7 24 64-87 100-123 (126)
58 PRK11877 psaI photosystem I re 26.5 95 0.0021 16.4 2.5 17 76-92 18-34 (38)
59 cd02862 NorE_like NorE_like su 26.1 1.7E+02 0.0036 20.0 4.4 48 45-92 53-102 (186)
60 COG3300 MHYT domain (predicted 24.8 1.4E+02 0.0031 21.9 4.0 55 37-91 134-193 (236)
61 PF06638 Strabismus: Strabismu 24.6 1.7E+02 0.0037 23.9 4.6 47 18-66 170-216 (505)
62 MTH00009 COX3 cytochrome c oxi 24.3 2.8E+02 0.006 20.3 5.5 46 47-92 129-176 (259)
63 PF15018 InaF-motif: TRP-inter 23.9 30 0.00066 18.3 0.3 18 45-62 14-31 (38)
64 MTH00155 COX3 cytochrome c oxi 23.9 2.8E+02 0.006 20.2 5.4 46 47-92 129-176 (255)
65 PF06946 Phage_holin_5: Phage 23.8 2E+02 0.0043 18.1 4.1 53 14-69 32-84 (93)
66 PF00510 COX3: Cytochrome c ox 23.4 2.7E+02 0.0058 20.1 5.2 46 47-92 128-175 (258)
67 PF04632 FUSC: Fusaric acid re 22.6 4.1E+02 0.0088 21.3 7.0 15 20-34 347-361 (650)
68 TIGR03063 srtB_target sortase 22.0 1.2E+02 0.0026 15.0 2.4 24 10-33 3-26 (29)
69 PF05251 UPF0197: Uncharacteri 21.8 2E+02 0.0044 17.5 4.4 13 54-66 25-37 (77)
70 PF00796 PSI_8: Photosystem I 20.5 61 0.0013 15.6 0.9 14 79-92 12-25 (25)
No 1
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.79 E-value=4.1e-20 Score=114.41 Aligned_cols=68 Identities=29% Similarity=0.714 Sum_probs=64.2
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCchh
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQKKG 71 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~k~ 71 (93)
|+++|++|+||+|++|..|+++.++||.+|+.|| ++.+|. +++.+|.+|..++.+|+.+|++|+++||
T Consensus 20 ~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d~-~i~~~N~~g~~~~~~~~~~~~~y~~~~~ 87 (87)
T PF03083_consen 20 PQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILINDW-PIIVPNVFGLVLSIIYLVVYYIYPSKKK 87 (87)
T ss_pred HHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCCe-eEEeeHHHHHHHHHHHHhheEEeCCCCC
Confidence 6899999999999999999999999999999999 888886 5899999999999999999999998764
No 2
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.76 E-value=1.8e-18 Score=125.22 Aligned_cols=70 Identities=46% Similarity=0.901 Sum_probs=65.3
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCchhH
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQKKGR 72 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~k~r 72 (93)
|+|+||+|+||+||+|+.||+++++||.+|+.|| .+.+|++.++.+|.+|++++++|+..|+.|+++|++
T Consensus 26 ~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~~Yi~~f~~ya~~k~~ 95 (243)
T KOG1623|consen 26 PTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIETVYISIFLYYAPKKKT 95 (243)
T ss_pred hhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHHHHHHHHheecCchhe
Confidence 7899999999999999999999999999999999 677745778999999999999999999999998873
No 3
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.29 E-value=4e-12 Score=92.27 Aligned_cols=66 Identities=20% Similarity=0.432 Sum_probs=61.1
Q ss_pred hhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCch
Q 037762 2 TFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQKK 70 (93)
Q Consensus 2 ~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~k 70 (93)
.+++++|+||+|.+|...-.+.++++..|+.|| ++.+|.+ |..+|.+|..++..++.+|+.|++++
T Consensus 146 ~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYG--lli~D~~-IaipN~iG~~l~~~QL~Ly~~y~~~~ 211 (243)
T KOG1623|consen 146 VIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYG--LLIKDFF-IAIPNVLGFLLGLIQLILYFKYPKTT 211 (243)
T ss_pred hhhhheecCceeeechHHHHHHHHHHHHHHHHH--HHhcCeE-EEcccHHHHHHHHHHHHHhhhcCCCc
Confidence 478999999999999999999999999999999 7888866 78999999999999999999998765
No 4
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.4e-11 Score=76.92 Aligned_cols=65 Identities=15% Similarity=0.397 Sum_probs=60.0
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccC
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQ 68 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~ 68 (93)
||..+++|+||++++|..++......+.+|+.|| ++.+| .|++..|.++..++..-+.....|.-
T Consensus 22 PQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~liIl~~kI~~~~ 86 (89)
T COG4095 22 PQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLIILFYKIKYIL 86 (89)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999 88887 88999999999999988888777743
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=98.02 E-value=5.5e-06 Score=47.66 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=37.7
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCce
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSI 43 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~ 43 (93)
||+++.+|+||++++|...+.....+..+|+.|+ ++.++++
T Consensus 19 PQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~~~ 59 (61)
T PF04193_consen 19 PQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNYPF 59 (61)
T ss_pred hHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcCCC
Confidence 8999999999999999999999999999999999 6776543
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.69 E-value=0.0066 Score=43.50 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=32.0
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHH
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFY 33 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~Y 33 (93)
||+.+.+|+||++++|...+..-..+..+|..|
T Consensus 21 PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 21 PQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred hHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999
No 7
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=96.63 E-value=0.0018 Score=42.64 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=52.7
Q ss_pred hcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCc
Q 037762 9 KRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQK 69 (93)
Q Consensus 9 ~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~ 69 (93)
+|..|.+|..+-.+.++.+.+|++|++ .++..++.++.+|++-...+.+++.=++.|...
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~ 98 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYS 98 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999996 555567889999999999999999888887654
No 8
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.0026 Score=41.40 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=52.7
Q ss_pred hcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCc
Q 037762 9 KRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQK 69 (93)
Q Consensus 9 ~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~ 69 (93)
.|..|.+|.............|.+|++ +++..++.++.+|.+=...+++++.=.+.|...
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999996 666667878999999999999999988888543
No 9
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=96.38 E-value=0.0025 Score=31.99 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=20.8
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHH
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIM 25 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~ 25 (93)
||+.+.+|+||++++|...+...+.
T Consensus 5 PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 5 PQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred hHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 8999999999999999776665443
No 10
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=92.65 E-value=0.25 Score=35.36 Aligned_cols=64 Identities=8% Similarity=0.098 Sum_probs=47.4
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhc
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVF 66 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y 66 (93)
||++.-+|+|||++.|......-+.++..=..-. +..+++...+....++..+..+++.-.+.|
T Consensus 156 PQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts--~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~y 219 (220)
T TIGR00951 156 PQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQS--VNETGDPLKAGLFVVSSLFNGLFAAQVFFY 219 (220)
T ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999988888866555555 434444545677777887777776655444
No 11
>PHA02246 hypothetical protein
Probab=87.65 E-value=3.3 Score=28.89 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=38.5
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHH
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIA 58 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~ 58 (93)
||+.+-+|+|++||.|...++....+-.+-..=- .+++-..-++.+......+-..
T Consensus 126 ~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m--~Lthv~~hIiiTEf~N~iLiLi 181 (192)
T PHA02246 126 TQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSM--VLTHTYVHIIATEFVNFVLILI 181 (192)
T ss_pred HHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHH--hhhCCcceeeHHHHHHHHHHHH
Confidence 5788899999999999988887766554444333 4555544467777766665443
No 12
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=87.61 E-value=0.48 Score=34.27 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=53.9
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCch
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQKK 70 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~k 70 (93)
+|+..-+|+|+++..|.......+..|..=..+. ....+++.+...-....+++..-..-..+|.+.+
T Consensus 159 ~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 159 LQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 4667778999999999999999999999999999 6666556556777777777777776666666544
No 13
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=87.34 E-value=1.4 Score=32.53 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=44.4
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCc
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQK 69 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~ 69 (93)
||+.+..|+||.|++|+.+...-.++...-+.|. .+.+. -++...-..=..++...+.....|...
T Consensus 26 Pqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~~-~~~~~~~~~yy~~~d~~l~~q~~yy~~ 91 (260)
T KOG2913|consen 26 PQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQPL-GSTLKVQAVYYTLADSVLFVQCLYYGN 91 (260)
T ss_pred hHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhccc-chhHHHHHHHHHHHHHHHHHHHHhcch
Confidence 8899999999999999999999888888888888 44443 222333333333344444444444443
No 14
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=79.51 E-value=2.5 Score=28.87 Aligned_cols=36 Identities=6% Similarity=0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHH
Q 037762 21 LATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAY 59 (93)
Q Consensus 21 ~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~ 59 (93)
.....++.+|+.|+ ++.++.. ....|........+.
T Consensus 118 ~~~l~~~~~w~~~n--~~igS~~-g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGSWG-GTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcCHH-HHHHHHHHHHHHHHH
Confidence 45788999999999 7888844 567776666665543
No 15
>COG1845 CyoC Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]
Probab=78.09 E-value=6.3 Score=28.24 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=38.2
Q ss_pred eEEehhhHHHHHHHH--HHHHHHHhccCchhHHHHHHHHHHHHHHHHhhhhc
Q 037762 43 ILVVTINSTGLAMEI--AYITIFFVFAQKKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 43 ~~v~~~N~~G~~l~~--~~~~~~~~y~~~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
.++...|..=+..|. ...+.....+.++++.+.+..+.+.+|..|+.+++
T Consensus 73 ~~l~~inT~iLl~SS~t~~~A~~a~~~~~~~~~~~wL~~T~lLG~~Fv~~q~ 124 (209)
T COG1845 73 LPLVLINTFILLSSSFTCGLAVHALRRGNRKGARAWLLLTLLLGAAFVGGQL 124 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888877 55566666666677788888889999999999875
No 16
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=69.50 E-value=25 Score=25.57 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=33.9
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCC
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPD 41 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d 41 (93)
||+-+|+.+||++++|..-+..-+.+-..-+.|. .++|
T Consensus 48 PQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g 85 (230)
T KOG3211|consen 48 PQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSG 85 (230)
T ss_pred hHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcC
Confidence 8999999999999999999999899888888888 5555
No 17
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=67.24 E-value=19 Score=25.02 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.=++.|...+.......+ ++++.+.+..+.+.+|..|+..|+
T Consensus 56 ~lnT~vLl~SS~~~~~A~~a~~~~~~~~~~~~L~~tl~lG~~Fl~~q~ 103 (190)
T TIGR02897 56 LIMTFLLLFSSFTCGIAIYEMRKENQKLMMFWMIITLLLGAGFVGFEI 103 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888766666544433 344555666778999999998875
No 18
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=67.19 E-value=6.3 Score=30.82 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=43.4
Q ss_pred hhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCC-ceEEehhhHHHHHHHHH
Q 037762 2 TFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPD-SILVVTINSTGLAMEIA 58 (93)
Q Consensus 2 ~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d-~~~v~~~N~~G~~l~~~ 58 (93)
++.-++++||.+|+|.-..+.-+++...=+.|= +.+| .+.|.+++.+|+++++.
T Consensus 320 Di~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 320 DISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhhe
Confidence 456688999999999888888777777777785 4544 67889999999998864
No 19
>COG3952 Predicted membrane protein [Function unknown]
Probab=62.62 E-value=17 Score=23.63 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=37.4
Q ss_pred hhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHH
Q 037762 8 KKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFF 64 (93)
Q Consensus 8 r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~ 64 (93)
++++...++..---+..+++.+-+.|. +-++|..- +..|+.|++.++.-+-+..
T Consensus 49 e~a~rsv~P~~FW~~sllGg~l~L~Yf--i~~~DpV~-Vl~~~~glF~~l~nL~L~~ 102 (113)
T COG3952 49 EHANRSVIPVLFWYFSLLGGLLLLSYF--IRRQDPVF-VLGQACGLFIYLRNLWLII 102 (113)
T ss_pred HhcCCCcchHHHHHHHHHhhHHHHHHH--HHhcchHH-HHHHhhhHHHHHHHHHHHH
Confidence 344555556555567788999999999 77888664 4677888877766554443
No 20
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=62.03 E-value=17 Score=27.86 Aligned_cols=51 Identities=10% Similarity=-0.017 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCch
Q 037762 17 PDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQKK 70 (93)
Q Consensus 17 ~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~k 70 (93)
.+|-.+...-+..|..+. ...+. ..++.+|.+|..++..-++.++.+++++
T Consensus 243 LvPPa~~~Gi~la~g~~~--~a~ga-~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 243 LLPPAVATGILLVISPLP--LAVKS-LILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred hhchHHHHHHHHHhccHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 345555556666666666 45555 4478999999999999888888887753
No 21
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=57.97 E-value=29 Score=23.48 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 69 KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 69 ~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
++++.+......+.+|..|+.+++
T Consensus 79 ~~~~~~~~L~~t~~lg~~Fl~~q~ 102 (183)
T cd00386 79 NRKKARLWLLLTILLGLAFLGLQA 102 (183)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677888888888765
No 22
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=57.77 E-value=40 Score=22.90 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHhccCchhHHHHHHHH-HHHHHHHHhhh
Q 037762 47 TINSTGLAMEIAYITIFFVFAQKKGRRLLLRFL-FLFLAKSFLFL 90 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~~k~r~~~~~~~-~~~~~~~~~~~ 90 (93)
.++.+|.+-...-... .+.++|+|.+..... ....+.||+++
T Consensus 4 ~aQ~~g~ia~~l~~~s--f~~k~~~~l~~~~~~~~~~~~ihf~LL 46 (163)
T PF10688_consen 4 LAQILGFIAFLLGILS--FQQKDDRRLLLLQAISCLLFAIHFALL 46 (163)
T ss_pred HHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777743333333 334455554444444 68999999886
No 23
>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional
Probab=49.57 E-value=58 Score=22.91 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=30.8
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
...|.+=++.|...+..-....+ ++++.+.+....+.+|..|+.+|+
T Consensus 69 ~~~nT~iLl~SS~~~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl~~Q~ 117 (204)
T PRK10663 69 VLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTFLFGAGFIGMEI 117 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788877777765555444333 334455567778999999988875
No 24
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=48.57 E-value=23 Score=21.36 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHH
Q 037762 15 FKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAM 55 (93)
Q Consensus 15 ~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l 55 (93)
+|..--....+++.+=+.|| +.++|.. .+.-.+.|...
T Consensus 28 ~P~~FW~lSl~Gs~lll~Y~--i~r~DpV-~ilgq~~gl~i 65 (72)
T PF07578_consen 28 VPVAFWYLSLIGSLLLLIYA--IIRKDPV-FILGQSFGLFI 65 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HHHcChH-HHHHHhcChHH
Confidence 34444566788999999999 7888843 34444444443
No 25
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=46.58 E-value=92 Score=21.21 Aligned_cols=48 Identities=21% Similarity=0.061 Sum_probs=31.5
Q ss_pred EehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 45 VVTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 45 v~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
+...|+.=++.|...........+ ++++.+....+.+.+|..|+.+|.
T Consensus 51 ~~~~nT~lLl~Ss~~~~~A~~a~~~~~~~~~~~~L~~t~~Lg~~F~~~q~ 100 (184)
T cd02865 51 LLSLNTAVLAASSVAMQWARRAARRNRRVLARLGLALAGALALAFLAGQL 100 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455787777777666655544443 344455566667888888888764
No 26
>PHA02246 hypothetical protein
Probab=45.07 E-value=91 Score=21.84 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=26.6
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCC
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPD 41 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d 41 (93)
|+.+.+.|.||++++|- .|--....+..-..|- .++.|
T Consensus 22 pgL~slvk~~nv~GvS~-~FWYLi~~tvgiSfyN--lL~T~ 59 (192)
T PHA02246 22 PGLVALVKAESVKGVSN-YFWYLIVATVGISFYN--LLLTD 59 (192)
T ss_pred hhHHHHhhhcccccHHH-HHHHHHHHHHHHHHHH--HHhcC
Confidence 67788899999999984 3444455566667777 45554
No 27
>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=44.99 E-value=45 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=30.4
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
...|+.=+..|...+..-....+ ++++.+.+..+.+.+|..|+.+|.
T Consensus 45 ~~~nT~vLl~Ss~~~~~A~~a~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~ 93 (180)
T TIGR02842 45 VLVETFLLLLSSITFGFAMLAMNKKNKKMVILWLAITFLLGLGFIGMEI 93 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688777777665555444433 334455556677889999988775
No 28
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=44.77 E-value=78 Score=21.43 Aligned_cols=24 Identities=13% Similarity=0.103 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Q 037762 68 QKKGRRLLLRFLFLFLAKSFLFLK 91 (93)
Q Consensus 68 ~~k~r~~~~~~~~~~~~~~~~~~~ 91 (93)
+.+.|-|-+.++++.+.+.+.++.
T Consensus 41 r~~tKyRDL~II~~L~ll~l~giq 64 (149)
T PF11694_consen 41 RLDTKYRDLSIIALLLLLLLIGIQ 64 (149)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHH
Confidence 334555666666666666665543
No 29
>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional
Probab=42.73 E-value=71 Score=23.44 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=30.9
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.=++.|...+.......+ ++++.+....+.+.+|+.|+.++.
T Consensus 130 pllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti~LG~~F~~~Q~ 178 (261)
T MTH00118 130 PLLNTAVLLASGVTVTWAHHSIMEGNRKQAIQALTLTILLGLYFTALQA 178 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788777777666555444333 334455566778999999998875
No 30
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=41.61 E-value=1.1e+02 Score=20.48 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHHHHHHHhhccccC-CceEEehhhHHHHHHHHHHHHHHHh
Q 037762 16 KPDPYLATIMNCSLWVFYGLPFVTP-DSILVVTINSTGLAMEIAYITIFFV 65 (93)
Q Consensus 16 s~~p~~~~~~n~~lW~~YG~~~l~~-d~~~v~~~N~~G~~l~~~~~~~~~~ 65 (93)
++..++..++....|..-|+ .+.- |.+ =...|....++ . ++.++..
T Consensus 14 s~~~f~~~~~~Ii~W~i~Gp-~~~~sdtW-QLviNt~ttIi-t-FlmvfLI 60 (132)
T PF04120_consen 14 SPWAFVIAVAVIIVWAISGP-VFGFSDTW-QLVINTATTII-T-FLMVFLI 60 (132)
T ss_pred CHHHHHHHHHHHHHHHHHhc-cccCcchH-HHHHccHHHHH-H-HHHHHHH
Confidence 56778888999999999994 4443 555 46889888888 3 4444443
No 31
>cd02864 Heme_Cu_Oxidase_III_1 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=40.51 E-value=1.1e+02 Score=21.33 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHhhhhc
Q 037762 48 INSTGLAMEIAYITIFFVFA--QKKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 48 ~N~~G~~l~~~~~~~~~~y~--~~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
.|+.=+..|...+..-.... .++++.+.+..+.+.+|..|+..|.
T Consensus 65 ~nT~iLl~SS~~~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl~~q~ 111 (202)
T cd02864 65 IMTFILITSSGTMAMAVNFGYRGNRKAAARLMLATALLGATFVGMQA 111 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665555433332 3344555566678899999988775
No 32
>PF09815 XK-related: XK-related protein; InterPro: IPR018629 This entry is represented by the multipass membrane protein XK, which may be involved in sodium-dependent transport of neutral amino acids or oligopeptides. It forms a heterodimer with Kell. In humans, Kell is an 93kDa type II membrane glycoprotein with endothelin-3-converting enzyme activity that is linked by a single disulphide bond to XK, that spans the membrane ten times. An absence of XK leads to clinical symptoms termed the McLeod syndrome [MIM:314850], an X-linked multi-system disorder characterised by late onset abnormalities in the neuromuscular and hematopoietic systems [, ].
Probab=39.11 E-value=48 Score=24.81 Aligned_cols=51 Identities=20% Similarity=0.457 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhccccCC-ceEEehhhHHHHHHHHHHHHHHHhccCc
Q 037762 19 PYLATIMNCSLWVFYGLPFVTPD-SILVVTINSTGLAMEIAYITIFFVFAQK 69 (93)
Q Consensus 19 p~~~~~~n~~lW~~YG~~~l~~d-~~~v~~~N~~G~~l~~~~~~~~~~y~~~ 69 (93)
.++...+...+|-.|+.|...+. ..++......|..+++..+++|+.+..+
T Consensus 280 ~~lEN~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~lGi~~m~~YY~~~HP 331 (332)
T PF09815_consen 280 MLLENVVLLLLWYFYKPPTLQSWYFLPILVVVLGGFLLGIAFMLLYYRFFHP 331 (332)
T ss_pred HHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34445566777877874433321 2334556778888899999988887543
No 33
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=38.28 E-value=85 Score=21.58 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=30.4
Q ss_pred EehhhHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHhhhhc
Q 037762 45 VVTINSTGLAMEIAYITIFFVFAQK--KGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 45 v~~~N~~G~~l~~~~~~~~~~y~~~--k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
+...|++=+..|...+.......++ +++.+......+.+|..|+..|.
T Consensus 52 ~~~~nT~vLl~SS~~~~~a~~a~~~~~~~~~~~~L~~t~~lG~~Fl~~q~ 101 (186)
T cd02863 52 LVFIETFLLLLSSFTCGLAMIAMNKNNKKKVILWLIITFLLGLGFVGMEI 101 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777776665555444433 33444556667888888888764
No 34
>PLN02194 cytochrome-c oxidase
Probab=36.37 E-value=1e+02 Score=22.68 Aligned_cols=47 Identities=19% Similarity=0.019 Sum_probs=29.7
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.=+..|...+..-....+ ++++.+....+.+.+|+.|+.+|.
T Consensus 133 ~llNT~iLlsSs~tv~~A~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~lQ~ 181 (265)
T PLN02194 133 PFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQG 181 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677766666655555444333 334445566667899999988874
No 35
>MTH00039 COX3 cytochrome c oxidase subunit III; Validated
Probab=35.93 E-value=1.1e+02 Score=22.36 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|++=++.|...+.......+ ++++.+....+.+.+|+.|+.++.
T Consensus 130 llnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~ 177 (260)
T MTH00039 130 LLNTAVLLSSGVTITWSHHSILEGNRTEAIQALFLTVLLGLYFTALQA 177 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777666555443332 233444556667899999988764
No 36
>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional
Probab=35.81 E-value=1.1e+02 Score=22.50 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|++=++.|.+.+.......+ ++++.+....+.+.+|..|+.++.
T Consensus 131 llnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~ 178 (261)
T MTH00075 131 LLNTAVLLASGVTVTWAHHSIMQGNRKEAIQSLALTIILGLYFTLLQA 178 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777665555444333 233445566677899999988875
No 37
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=35.01 E-value=1.2e+02 Score=22.25 Aligned_cols=47 Identities=19% Similarity=-0.001 Sum_probs=29.3
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.=++.|...+.......+ ++++.+....+.+.+|..|+.++.
T Consensus 131 pllnT~iLl~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~ 179 (262)
T MTH00052 131 PLLNTAVLLSSGATVTWAHHGIISGKRKEAIIGLALTVALGLLFTGLQA 179 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777776655554444332 334444566678899999988764
No 38
>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional
Probab=34.73 E-value=1e+02 Score=22.57 Aligned_cols=47 Identities=15% Similarity=0.057 Sum_probs=29.5
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.=++.|.+.+..-....+ ++++.+....+.+.+|..|+.++.
T Consensus 129 pllnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~ti~LG~~Fl~~Q~ 177 (260)
T MTH00189 129 PLLNTAVLLSSGVTVTWAHHSLMEGNRKEAIQALTLTVILGVYFTLLQA 177 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677767766655555444333 334445556667899999988775
No 39
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.68 E-value=27 Score=22.98 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHhccCchh
Q 037762 47 TINSTGLAMEIAYITIFFVFAQKKG 71 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~~k~ 71 (93)
.--++|.+.+++-+++.+.|+-+|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 40
>MTH00141 COX3 cytochrome c oxidase subunit III; Provisional
Probab=34.22 E-value=1.6e+02 Score=21.43 Aligned_cols=47 Identities=19% Similarity=0.029 Sum_probs=29.5
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.=++.|...+.......+ ++++.+....+.+.+|+.|+.++.
T Consensus 128 pllnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~ti~LG~~Fl~~Q~ 176 (259)
T MTH00141 128 PLLNTAVLLASGVTVTWAHHSLMEGDYKSALQGLGLTIILGVYFTFLQA 176 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777665555444333 233455566667888998888764
No 41
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.60 E-value=89 Score=20.83 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=41.8
Q ss_pred hcCcCCCCchHHHHHHHHHHHHHHHhhccccC-CceEEehhhHHHHHHHHHHHHHHHh
Q 037762 9 KRSVEEFKPDPYLATIMNCSLWVFYGLPFVTP-DSILVVTINSTGLAMEIAYITIFFV 65 (93)
Q Consensus 9 ~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~-d~~~v~~~N~~G~~l~~~~~~~~~~ 65 (93)
+||-+-+|.-+..+.++-+...+.|+ +..+ .++.++...+.....+.++..=|..
T Consensus 47 kK~P~~ISG~MT~AL~~YS~vFMRfA--~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~ 102 (132)
T KOG1590|consen 47 KKSPEMISGRMTSALCLYSAVFMRFA--WMVQPRNYLLFACHATNETAQLAQGSRFLN 102 (132)
T ss_pred cCChhhccccchHHHHHHHHHHHHHH--HhcCcchhhHHHHhhhhHHHHHHHHHHHHH
Confidence 57778889999999999999999999 6665 5676777666666666666654444
No 42
>MTH00099 COX3 cytochrome c oxidase subunit III; Validated
Probab=32.29 E-value=1e+02 Score=22.56 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.=++.|...+.......+ ++++.+....+.+.+|..|+.++.
T Consensus 131 llnT~lLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~ 178 (261)
T MTH00099 131 LLNTSVLLASGVSITWAHHSLMEGNRKHMLQALFITILLGLYFTLLQA 178 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3566666666655555444333 334445566678899999988764
No 43
>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional
Probab=31.63 E-value=1.7e+02 Score=21.52 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=29.6
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.=++.|...+..-....+ ++++.+....+.+.+|+.|+.++.
T Consensus 130 pllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~ 178 (261)
T MTH00130 130 PLLNTAVLLASGVTVTWAHHSIMEGERKQAIQSLTLTILLGFYFTFLQA 178 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777665554433332 334445566667899999988774
No 44
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=31.59 E-value=1.7e+02 Score=19.91 Aligned_cols=67 Identities=13% Similarity=0.316 Sum_probs=37.7
Q ss_pred hhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCchhH----HHHHHHHHH
Q 037762 6 IFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQKKGR----RLLLRFLFL 81 (93)
Q Consensus 6 i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~k~r----~~~~~~~~~ 81 (93)
..++|.++.++.-..++......+| +| + . -.+.+.|..+-.+.+.+-..-.+.|.| +++..++..
T Consensus 68 lm~~kgi~rm~lG~~vm~~~~~llw--~g------g-v--~~~~IAg~~lv~filmvVLiPEpg~QRS~~DN~LA~~vi~ 136 (144)
T PF01350_consen 68 LMRRKGIGRMSLGMLVMAVAGYLLW--MG------G-V--PPGQIAGVLLVFFILMVVLIPEPGKQRSQQDNQLAYFVIG 136 (144)
T ss_pred hhcCCCcchhhHHHHHHHHHHHHHH--hc------C-C--cHHHhHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHH
Confidence 4577888888877777777777777 45 2 2 244556665544444443333333333 455555544
Q ss_pred HH
Q 037762 82 FL 83 (93)
Q Consensus 82 ~~ 83 (93)
++
T Consensus 137 vl 138 (144)
T PF01350_consen 137 VL 138 (144)
T ss_pred HH
Confidence 43
No 45
>MTH00024 COX3 cytochrome c oxidase subunit III; Validated
Probab=31.25 E-value=1.6e+02 Score=21.63 Aligned_cols=46 Identities=26% Similarity=0.179 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.=++.|...+.......+ ++++.+....+.+.+|+.|+.++.
T Consensus 131 llnT~iLL~Ss~~v~~a~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~ 178 (261)
T MTH00024 131 LLNTAVLLSSGATVTWAHHAIISGKRKEAILGLFLTVFLGVLFTGLQA 178 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777666555444333 333445566667899999988764
No 46
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=31.19 E-value=1.6e+02 Score=19.49 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=4.7
Q ss_pred HHHHHHHHHhhh
Q 037762 79 LFLFLAKSFLFL 90 (93)
Q Consensus 79 ~~~~~~~~~~~~ 90 (93)
.+..++..|+.+
T Consensus 40 ~a~~ls~lFlv~ 51 (133)
T PF04238_consen 40 TAFVLSALFLVS 51 (133)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 47
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=30.69 E-value=73 Score=16.09 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhhc
Q 037762 78 FLFLFLAKSFLFLKI 92 (93)
Q Consensus 78 ~~~~~~~~~~~~~~~ 92 (93)
++.=.+++.++|++|
T Consensus 13 lvfPai~Ma~lf~yI 27 (31)
T TIGR03052 13 LVFPAVFMALLFRYI 27 (31)
T ss_pred HHHHHHHHHHHHHhe
Confidence 333344444554443
No 48
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=30.19 E-value=22 Score=26.25 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=23.9
Q ss_pred ChhhhhhhhcCcCCCCchHHHHHHHHHHHHHHHh
Q 037762 1 PTFVKIFKKRSVEEFKPDPYLATIMNCSLWVFYG 34 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG 34 (93)
||+..-+|+|++|+++...| .+++..=..|+
T Consensus 183 PQI~~n~~~~s~eGls~~~F---~~~~~~n~~y~ 213 (260)
T KOG2913|consen 183 PQIILNHLRKSTEGLSLLAF---AFNSLGNTTYI 213 (260)
T ss_pred chhhhhhccCccchhHHHHH---HHHHccccccc
Confidence 78899999999999997554 44555556677
No 49
>MTH00083 COX3 cytochrome c oxidase subunit III; Provisional
Probab=30.17 E-value=1.4e+02 Score=21.89 Aligned_cols=47 Identities=15% Similarity=-0.024 Sum_probs=29.5
Q ss_pred ehhhHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFA-QKKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~-~~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.=++.|...+....... .++++.+....+.+.+|+.|+.++.
T Consensus 126 pllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~L~~Ti~LG~~F~~~Q~ 173 (256)
T MTH00083 126 PLLNTIILLSSGVSVTWSHHSLCLSNKSCTNSLLLTCFLGLYFTSFQL 173 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467776666665555444433 2334455666677889999988764
No 50
>MTH00219 COX3 cytochrome c oxidase subunit III; Provisional
Probab=29.39 E-value=1.6e+02 Score=21.59 Aligned_cols=47 Identities=13% Similarity=-0.009 Sum_probs=29.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|++=++.|...+.......+ ++++.+....+.+.+|+.|+.++.
T Consensus 131 pllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti~LG~~F~~~Q~ 179 (262)
T MTH00219 131 PLLNTAVLLASGVTVTWAHHSLMESNHKEAQQGLLFTILLGLYFTMLQG 179 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677766666655554444332 333445566677899999988764
No 51
>PRK09917 hypothetical protein; Provisional
Probab=29.02 E-value=1e+02 Score=20.87 Aligned_cols=44 Identities=0% Similarity=-0.229 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHh
Q 037762 20 YLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFV 65 (93)
Q Consensus 20 ~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~ 65 (93)
..+.+.++..|..|- ++.+-......+|.+|.+.-..+.-...+
T Consensus 36 ~~~~i~G~vgw~vy~--~~~~~~~~~~~asfiaa~~igl~s~~~Ar 79 (157)
T PRK09917 36 RWCALLGAIGHGSRM--LMMTSGLNIEWSTFMASMLVGTIGIQWSR 79 (157)
T ss_pred HHHHHHHHHHHHHHH--HHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999998 55543233456677766655555444443
No 52
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=28.87 E-value=29 Score=24.97 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=40.2
Q ss_pred hhhhhhcCcCCCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHH
Q 037762 4 VKIFKKRSVEEFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFF 64 (93)
Q Consensus 4 ~~i~r~ks~~~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~ 64 (93)
.++-|.|.++. |.+.-+.+.+++.+|..+= +.++.--++..|.+|..+-+.+....+
T Consensus 98 ~~ipRsReVgQ-S~ltSv~Tti~all~s~~l---v~RirPdlil~NGPGTCv~i~~~a~l~ 154 (211)
T KOG3339|consen 98 YEIPRSREVGQ-SWLTSVFTTIWALLQSFVL---VWRIRPDLILCNGPGTCVPICLSAYLM 154 (211)
T ss_pred eecchhhhhhh-hhhhhHHHHHHHHHHHheE---EEecCCCEEEECCCCcEeHHHHHHHHH
Confidence 45778888876 7777788888888888765 333222267889999887776665544
No 53
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=28.38 E-value=67 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 037762 70 KGRRLLLRFLFLFLAKSFLFL 90 (93)
Q Consensus 70 k~r~~~~~~~~~~~~~~~~~~ 90 (93)
++|.+.+++.++.+|+.||..
T Consensus 12 e~rFr~~g~~Ai~~~l~fL~~ 32 (155)
T PF11812_consen 12 ERRFRAYGLAAIAIALAFLVI 32 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888877653
No 54
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=27.61 E-value=2.1e+02 Score=22.18 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.8
Q ss_pred ChhhhhhhhcCcCCCCchH
Q 037762 1 PTFVKIFKKRSVEEFKPDP 19 (93)
Q Consensus 1 p~~~~i~r~ks~~~~s~~p 19 (93)
||++-=+|+||+.++|+--
T Consensus 141 Pqii~N~RrKSv~gLnfDF 159 (372)
T KOG3145|consen 141 PQIILNWRRKSVVGLNFDF 159 (372)
T ss_pred hHHHhhhhhcceeccccce
Confidence 7778889999999998654
No 55
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=27.05 E-value=45 Score=23.40 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=18.2
Q ss_pred HHhhccccCCceEEehhhHHHHHHHHHHHH
Q 037762 32 FYGLPFVTPDSILVVTINSTGLAMEIAYIT 61 (93)
Q Consensus 32 ~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~ 61 (93)
.|| ++.|.+.+...|..+....+.|..
T Consensus 150 qYG---lT~~R~~~~~~~~~~~~~~l~~~~ 176 (217)
T PF13687_consen 150 QYG---LTPNRYYALLLAIFLLIYALYYIF 176 (217)
T ss_pred HHC---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 588 677766666667666666665555
No 56
>COG1808 Predicted membrane protein [Function unknown]
Probab=26.87 E-value=1.6e+02 Score=22.61 Aligned_cols=52 Identities=10% Similarity=-0.128 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCch
Q 037762 16 KPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQKK 70 (93)
Q Consensus 16 s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~k 70 (93)
+.+|-.++..-...|-.|| +..+... ++..|.++..+...-.+.+.-+...+
T Consensus 153 aL~pP~~~~g~gia~g~~~--la~gs~~-lll~nll~i~l~a~I~~~~~G~~~~e 204 (334)
T COG1808 153 ALMPPLCTVGLGIAVGNLG--LALGSIL-LLLGNLLFINLSAMIGFWAIGLSLLE 204 (334)
T ss_pred hhcchHHHHHHHHHHHhhH--HHHccHH-HHHHHHHHHHHHHHHHHHHhccCccC
Confidence 4566677777778999999 7888866 68999999999998888888877643
No 57
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=26.50 E-value=1.5e+02 Score=17.53 Aligned_cols=24 Identities=4% Similarity=0.378 Sum_probs=12.6
Q ss_pred HhccCchhHHHHHHHHHHHHHHHH
Q 037762 64 FVFAQKKGRRLLLRFLFLFLAKSF 87 (93)
Q Consensus 64 ~~y~~~k~r~~~~~~~~~~~~~~~ 87 (93)
..+.++.+..++.+......|+.+
T Consensus 100 ~~~~e~~~~~~~~g~~l~~~g~~l 123 (126)
T PF00892_consen 100 LFLGERPSWRQIIGIILIIIGVVL 123 (126)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHH
Confidence 333444444556666666666544
No 58
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=26.46 E-value=95 Score=16.41 Aligned_cols=17 Identities=18% Similarity=0.123 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhhc
Q 037762 76 LRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (93)
.+++.=.+++.++|++|
T Consensus 18 VGlvfPai~Mallf~yI 34 (38)
T PRK11877 18 VGWVFPAVFMVLLGRYI 34 (38)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444445555555554
No 59
>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Probab=26.05 E-value=1.7e+02 Score=19.96 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=29.1
Q ss_pred EehhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 45 VVTINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 45 v~~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
+...|+.=++.|......-....+ ++++.+......+.+|..|+.++.
T Consensus 53 ~~~lnT~iLl~Ss~~~~~a~~a~~~~~~~~~~~~L~~t~~lg~~Fl~~q~ 102 (186)
T cd02862 53 LGALNTLVLLTSSFTVALAVRAARAGRRRRARRWLAAAVLLGLVFLVIKY 102 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677667776655544433333 344555666667888888887664
No 60
>COG3300 MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]
Probab=24.81 E-value=1.4e+02 Score=21.91 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=34.4
Q ss_pred cccCCceEEehhhHHHHHHHHHHHHHHHhcc----CchhH-HHHHHHHHHHHHHHHhhhh
Q 037762 37 FVTPDSILVVTINSTGLAMEIAYITIFFVFA----QKKGR-RLLLRFLFLFLAKSFLFLK 91 (93)
Q Consensus 37 ~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~----~~k~r-~~~~~~~~~~~~~~~~~~~ 91 (93)
.+.-|..++..+-.+|...+..-+..+.+-+ +..+| .....+...+.++||-+|.
T Consensus 134 ~I~y~~~~v~~Svliav~as~~AL~~~~rlr~s~~~~~~~~~~a~ll~laI~gmHfTgMa 193 (236)
T COG3300 134 TIVYDPALVALSVLIAVAASFVALWLFFRLRGSRRSRLRRAVAALLLGLAIVGMHFTGMA 193 (236)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5666766666677777777777666666622 11122 2245555688899998774
No 61
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=24.62 E-value=1.7e+02 Score=23.92 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhc
Q 037762 18 DPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVF 66 (93)
Q Consensus 18 ~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y 66 (93)
+.++..++-...|+.||.=++..... =..+++....+.+-..+|..|
T Consensus 170 ll~Lvfl~~~syWLFY~vrIl~~~~~--dy~~IV~yA~SlvDaLLFiHY 216 (505)
T PF06638_consen 170 LLVLVFLFLFSYWLFYGVRILDPRES--DYQGIVSYAVSLVDALLFIHY 216 (505)
T ss_pred HHHHHHHHHHHHHHHhhheeeechhh--hHHHHHHHHHHHHHHHHHHHH
Confidence 34555666788899999422222111 123566677777777777766
No 62
>MTH00009 COX3 cytochrome c oxidase subunit III; Validated
Probab=24.31 E-value=2.8e+02 Score=20.30 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.=++.|...+.......+ ++++.+....+.+.+|..|+.++.
T Consensus 129 ~lnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~ 176 (259)
T MTH00009 129 LLNTAVLLASGVTVTWAHHSLIEGDRPEATQALILTVLLGAYFTFLQA 176 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777665555444333 334445566678999999988764
No 63
>PF15018 InaF-motif: TRP-interacting helix
Probab=23.93 E-value=30 Score=18.29 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=13.5
Q ss_pred EehhhHHHHHHHHHHHHH
Q 037762 45 VVTINSTGLAMEIAYITI 62 (93)
Q Consensus 45 v~~~N~~G~~l~~~~~~~ 62 (93)
++.+...|..++++|+.+
T Consensus 14 l~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 14 LFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 456777888888888765
No 64
>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional
Probab=23.92 E-value=2.8e+02 Score=20.20 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.=++.|...+.......+ ++++.+....+.+.+|..|+.++.
T Consensus 129 ~lnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~t~~LG~~Fl~~Q~ 176 (255)
T MTH00155 129 LLNTIILLSSGVTVTWAHHSLMENNYKQATQSLFFTIILGIYFTMLQA 176 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777665555444433 233444556667889999988764
No 65
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.77 E-value=2e+02 Score=18.15 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCceEEehhhHHHHHHHHHHHHHHHhccCc
Q 037762 14 EFKPDPYLATIMNCSLWVFYGLPFVTPDSILVVTINSTGLAMEIAYITIFFVFAQK 69 (93)
Q Consensus 14 ~~s~~p~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N~~G~~l~~~~~~~~~~y~~~ 69 (93)
+-..+|.+...++..+=..+. +..+|.- +..--..|.+.+..-..++=.++++
T Consensus 32 ~~K~iPlIs~viGilLG~~~~--~~~~~~~-l~~~~~aG~laGlAaTGL~e~~t~r 84 (93)
T PF06946_consen 32 PNKWIPLISVVIGILLGAAAY--PLTGDGN-LALMAWAGGLAGLAATGLFEQFTNR 84 (93)
T ss_pred CcchhhHHHHHHHHHHHHHhh--hcCCCcc-HHHHHHHHHHhhhhhhhHHHHHHhh
Confidence 457888888888888888887 6666532 2232345777777777776666554
No 66
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=23.37 E-value=2.7e+02 Score=20.11 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFAQ--KKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~--~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.=++.|...+..-....+ ++++.+......+.+|+.|+.++.
T Consensus 128 ~lnT~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~LG~~Fl~~Q~ 175 (258)
T PF00510_consen 128 LLNTILLLSSSVTVTWAHHALKRGNRKAARLWLLLTILLGLLFLVLQV 175 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4566666666655544433322 334455566667889999988764
No 67
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=22.61 E-value=4.1e+02 Score=21.31 Aligned_cols=15 Identities=27% Similarity=0.744 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHh
Q 037762 20 YLATIMNCSLWVFYG 34 (93)
Q Consensus 20 ~~~~~~n~~lW~~YG 34 (93)
+++..+.|.+|..=|
T Consensus 347 ~la~~~~~l~Wi~t~ 361 (650)
T PF04632_consen 347 FLAILIAGLFWIATG 361 (650)
T ss_pred HHHHHHHHHHHHHcC
Confidence 566677778887777
No 68
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=21.98 E-value=1.2e+02 Score=15.01 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=14.2
Q ss_pred cCcCCCCchHHHHHHHHHHHHHHH
Q 037762 10 RSVEEFKPDPYLATIMNCSLWVFY 33 (93)
Q Consensus 10 ks~~~~s~~p~~~~~~n~~lW~~Y 33 (93)
|+.++-+...|...++.+.+++.+
T Consensus 3 kT~D~a~i~ly~~l~~~s~~~Li~ 26 (29)
T TIGR03063 3 KTGDSAQIGLYAVLFLGSGLFLIR 26 (29)
T ss_pred CCccchhHHHHHHHHHHHHHHHhh
Confidence 344444556666666666666654
No 69
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=21.80 E-value=2e+02 Score=17.48 Aligned_cols=13 Identities=23% Similarity=0.771 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhc
Q 037762 54 AMEIAYITIFFVF 66 (93)
Q Consensus 54 ~l~~~~~~~~~~y 66 (93)
.++..++..|+.|
T Consensus 25 ~iGl~fta~Ffiy 37 (77)
T PF05251_consen 25 AIGLFFTAWFFIY 37 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566666665
No 70
>PF00796 PSI_8: Photosystem I reaction centre subunit VIII; InterPro: IPR001302 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This entry represents subunit VIII (PsaI) of the photosystem I (PSI) reaction centre. PSI is located, along with photosystem II (PSII), in the thylakoid photosynthetic membranes of plants, green algae and cyanobacteria. The crystal structure of PSI from the thermophilic cyanobacterium Synechococcus elongatus (Thermosynechococcus elongatus) has 12 protein subunits and 127 cofactors comprising 96 chlorophylls, 2 phylloquinones, 3 4Fe4S clusters, 22 carotenoids, 4 lipids, and a putative calcium ion []. PsaI consists of a single transmembrane helix, and has a crucial role in aiding normal structural organisation of PsaL within the PSI complex and the absence of PsaI alters PsaL organisation, leading to a small, but physiologically significant, defect in PSI function []. PsaL encodes a subunit of PSI and is necessary for trimerisation of PSI. PsaL may constitute the trimer-forming domain in the structure of PSI []. ; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_I 2O01_I 3LW5_I 2WSE_I 2WSC_I 1JB0_I 3PCQ_I.
Probab=20.45 E-value=61 Score=15.61 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhhc
Q 037762 79 LFLFLAKSFLFLKI 92 (93)
Q Consensus 79 ~~~~~~~~~~~~~~ 92 (93)
+.=.+++.++|.+|
T Consensus 12 vfPai~m~~lf~yI 25 (25)
T PF00796_consen 12 VFPAIAMALLFLYI 25 (25)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HhHHHHHHHHHhcC
Confidence 33444555555543
Done!