Query 037762
Match_columns 93
No_of_seqs 114 out of 1040
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_C Cytochrome C oxidase po 32.9 79 0.0027 22.0 4.9 47 46-92 130-178 (261)
2 1qle_C Cytochrome C oxidase po 30.3 97 0.0033 21.8 5.0 46 47-92 142-190 (273)
3 1m56_C Cytochrome C oxidase; m 27.4 1E+02 0.0034 21.6 4.7 46 47-92 135-183 (266)
4 1rkl_A Dolichyl-diphosphooligo 27.2 44 0.0015 16.7 2.0 19 39-58 3-21 (36)
5 1jb0_I Photosystem 1 reaction 20.9 67 0.0023 16.2 2.0 17 76-92 18-34 (38)
6 1qle_D Cytochrome AA3, ccytoch 17.8 1.2E+02 0.0041 15.5 3.0 19 75-93 23-41 (43)
7 2vxz_A Pyrsv_GP04; viral prote 15.7 1.7E+02 0.006 19.3 3.6 30 20-49 126-155 (165)
8 1fft_C Ubiquinol oxidase; elec 14.3 1.1E+02 0.0037 20.4 2.4 23 70-92 95-117 (204)
9 3lw5_I PSI-I, photosystem I re 12.7 87 0.003 15.0 1.1 12 81-92 17-28 (30)
10 2lat_A Dolichyl-diphosphooligo 12.1 76 0.0026 15.9 0.8 13 46-58 9-21 (37)
No 1
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=32.94 E-value=79 Score=22.05 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=29.8
Q ss_pred ehhhHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHhhhhc
Q 037762 46 VTINSTGLAMEIAYITIFFVFA--QKKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 46 ~~~N~~G~~l~~~~~~~~~~y~--~~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
-..|+.-++.|...+..-.... .++++.+....+.+.+|+.|+.++.
T Consensus 130 pllnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~~LG~~F~~~Q~ 178 (261)
T 1v54_C 130 PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQA 178 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578876666665554443332 2344555666677889999988764
No 2
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=30.29 E-value=97 Score=21.78 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVFA---QKKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~---~~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.-++.|...+..-.... .++++.+....+.+.+|+.|+.++.
T Consensus 142 llnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~ 190 (273)
T 1qle_C 142 LINTLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQA 190 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578876666665555444332 3344555666778889999988764
No 3
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=27.36 E-value=1e+02 Score=21.59 Aligned_cols=46 Identities=15% Similarity=-0.046 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHhc--c-CchhHHHHHHHHHHHHHHHHhhhhc
Q 037762 47 TINSTGLAMEIAYITIFFVF--A-QKKGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y--~-~~k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
..|+.-++.|...+..-... . .++++.+....+.+.+|+.|+.++.
T Consensus 135 llnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~ 183 (266)
T 1m56_C 135 LINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQA 183 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57886666665555443332 2 3334555666678899999988764
No 4
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=27.19 E-value=44 Score=16.73 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=12.2
Q ss_pred cCCceEEehhhHHHHHHHHH
Q 037762 39 TPDSILVVTINSTGLAMEIA 58 (93)
Q Consensus 39 ~~d~~~v~~~N~~G~~l~~~ 58 (93)
+++... ..+|.+|...-..
T Consensus 3 sD~qL~-~lan~lG~~~~~L 21 (36)
T 1rkl_A 3 SDEQLN-SLAITFGIVMMTL 21 (36)
T ss_dssp SSCGGG-HHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHHHHH
Confidence 444443 5789999877553
No 5
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=20.91 E-value=67 Score=16.22 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhhhc
Q 037762 76 LRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (93)
.+++.=.+++.++|++|
T Consensus 18 VglvfPai~Mallf~yI 34 (38)
T 1jb0_I 18 VCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp HHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444445555555554
No 6
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=17.77 E-value=1.2e+02 Score=15.52 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhhcC
Q 037762 75 LLRFLFLFLAKSFLFLKIF 93 (93)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ 93 (93)
..+...+.+++.+++|-||
T Consensus 23 ~~k~gt~~~~~~ll~maif 41 (43)
T 1qle_D 23 GATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444456777777777765
No 7
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=15.68 E-value=1.7e+02 Score=19.31 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhccccCCceEEehhh
Q 037762 20 YLATIMNCSLWVFYGLPFVTPDSILVVTIN 49 (93)
Q Consensus 20 ~~~~~~n~~lW~~YG~~~l~~d~~~v~~~N 49 (93)
-+..++|+.+=+.||=|+-.+|....+.+|
T Consensus 126 ~~l~fl~~~l~~l~g~p~~k~~~~~~~~~~ 155 (165)
T 2vxz_A 126 IILSFLNHLLKMIYGEPYVKTDETVYLTAN 155 (165)
T ss_dssp HHHHHHHHHHHHHHCSCSBCSSSCBEEGGG
T ss_pred HHHHHHHHHHHHHhCCCccccccEEEEEec
Confidence 467799999999999999999877666666
No 8
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=14.35 E-value=1.1e+02 Score=20.40 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhc
Q 037762 70 KGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 70 k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
+++.+....+.+.+|..|+.++.
T Consensus 95 ~~~~~~~L~~t~~LG~~Fl~~q~ 117 (204)
T 1fft_C 95 KSQVISWLALTWLFGAGFIGMEI 117 (204)
T ss_dssp GGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778999999998875
No 9
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=12.68 E-value=87 Score=15.00 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=6.3
Q ss_pred HHHHHHHhhhhc
Q 037762 81 LFLAKSFLFLKI 92 (93)
Q Consensus 81 ~~~~~~~~~~~~ 92 (93)
=.+++.++|.+|
T Consensus 17 Pai~Ma~lf~yI 28 (30)
T 3lw5_I 17 PAVAMASLFLHV 28 (30)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHHHHHh
Confidence 345555555554
No 10
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=12.10 E-value=76 Score=15.91 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=8.9
Q ss_pred ehhhHHHHHHHHH
Q 037762 46 VTINSTGLAMEIA 58 (93)
Q Consensus 46 ~~~N~~G~~l~~~ 58 (93)
..+|.+|...-+.
T Consensus 9 ~lan~lG~~~~~L 21 (37)
T 2lat_A 9 IFANMLGVSLFLL 21 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888776553
Done!