Query 037762
Match_columns 93
No_of_seqs 114 out of 1040
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 06:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037762.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037762hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54c_ f.25.1.1 (C:) Mitochon 20.7 66 0.0048 20.7 4.3 48 45-92 127-176 (259)
2 d1m56c_ f.25.1.1 (C:) Bacteria 15.2 1.4E+02 0.01 18.9 5.2 48 45-92 132-182 (265)
3 d1fftc_ f.25.1.1 (C:) Cytochro 14.0 41 0.003 20.3 1.8 23 70-92 77-99 (185)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 8.5 96 0.007 13.0 1.7 10 25-34 3-12 (26)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 6.9 85 0.0062 14.3 1.0 9 49-57 4-12 (36)
6 d1jb0i_ f.23.17.1 (I:) Subunit 6.5 1.5E+02 0.011 13.5 2.0 11 82-92 24-34 (38)
7 d1vi0a2 a.121.1.1 (A:78-194) H 5.3 2.3E+02 0.017 14.4 3.2 29 5-33 59-88 (117)
8 d1xioa_ f.13.1.1 (A:) Sensory 4.9 3.7E+02 0.027 16.1 5.6 44 47-90 9-54 (226)
9 d2croa_ a.35.1.2 (A:) cro 434 4.6 1.2E+02 0.0088 14.5 0.8 8 27-34 57-64 (65)
10 d2e74e1 f.23.24.1 (E:1-32) Pet 4.5 1.9E+02 0.014 12.4 2.5 13 51-63 3-15 (32)
No 1
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.74 E-value=66 Score=20.66 Aligned_cols=48 Identities=21% Similarity=0.115 Sum_probs=30.7
Q ss_pred EehhhHHHHHHHHHHHHHHHhccCch--hHHHHHHHHHHHHHHHHhhhhc
Q 037762 45 VVTINSTGLAMEIAYITIFFVFAQKK--GRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 45 v~~~N~~G~~l~~~~~~~~~~y~~~k--~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
+...|+.=++.|...+..-...-+++ ++.+....+.+.+|..|+..+.
T Consensus 127 lpllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~ 176 (259)
T d1v54c_ 127 VPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQA 176 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44678877777777666555544333 3344555667888888887763
No 2
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.15 E-value=1.4e+02 Score=18.88 Aligned_cols=48 Identities=17% Similarity=-0.009 Sum_probs=28.2
Q ss_pred EehhhHHHHHHHHHHHHHHHhccCc--hhHHH-HHHHHHHHHHHHHhhhhc
Q 037762 45 VVTINSTGLAMEIAYITIFFVFAQK--KGRRL-LLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 45 v~~~N~~G~~l~~~~~~~~~~y~~~--k~r~~-~~~~~~~~~~~~~~~~~~ 92 (93)
+...|+.=++.|...+..-.....+ +++.. ....+.+.+|..|+.++.
T Consensus 132 l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~ 182 (265)
T d1m56c_ 132 LPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQA 182 (265)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888777766665443322 22222 234456778888877653
No 3
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=13.96 E-value=41 Score=20.32 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhc
Q 037762 70 KGRRLLLRFLFLFLAKSFLFLKI 92 (93)
Q Consensus 70 k~r~~~~~~~~~~~~~~~~~~~~ 92 (93)
+++.+......+.+|..|+.+|.
T Consensus 77 ~~~~~~~L~~t~~lG~~Fl~~q~ 99 (185)
T d1fftc_ 77 KSQVISWLALTWLFGAGFIGMEI 99 (185)
T ss_dssp GGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888888887764
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.53 E-value=96 Score=13.02 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=5.7
Q ss_pred HHHHHHHHHh
Q 037762 25 MNCSLWVFYG 34 (93)
Q Consensus 25 ~n~~lW~~YG 34 (93)
.+..+|+.++
T Consensus 3 aslaiw~fw~ 12 (26)
T d1rzhh2 3 ASLAIYSFWI 12 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455666665
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.88 E-value=85 Score=14.35 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 037762 49 NSTGLAMEI 57 (93)
Q Consensus 49 N~~G~~l~~ 57 (93)
|.+|+.-.+
T Consensus 4 N~Lg~iAt~ 12 (36)
T d2axtm1 4 NQLGLIATA 12 (36)
T ss_dssp CTTHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444333
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.49 E-value=1.5e+02 Score=13.52 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=5.3
Q ss_pred HHHHHHhhhhc
Q 037762 82 FLAKSFLFLKI 92 (93)
Q Consensus 82 ~~~~~~~~~~~ 92 (93)
.+.+.+||.+|
T Consensus 24 ~vvMglLFiyI 34 (38)
T d1jb0i_ 24 TVVMGLLFLYI 34 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHheee
Confidence 33445555544
No 7
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=5.25 E-value=2.3e+02 Score=14.36 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=16.5
Q ss_pred hhhhhcCcC-CCCchHHHHHHHHHHHHHHH
Q 037762 5 KIFKKRSVE-EFKPDPYLATIMNCSLWVFY 33 (93)
Q Consensus 5 ~i~r~ks~~-~~s~~p~~~~~~n~~lW~~Y 33 (93)
+-++++... ++++.....++++..-|..|
T Consensus 59 ~g~~~G~ir~d~d~~~~a~~i~g~i~~~~~ 88 (117)
T d1vi0a2 59 EGIQSGEIKEGLDVRLARQMIFGTIDETVT 88 (117)
T ss_dssp HHHHTTCBCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccCCCHHHHHHHHHHHHHHHHH
Confidence 344555553 46666666666666666544
No 8
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.88 E-value=3.7e+02 Score=16.15 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHHHHHhhh
Q 037762 47 TINSTGLAMEIAYITIFFVFAQKKGRR--LLLRFLFLFLAKSFLFL 90 (93)
Q Consensus 47 ~~N~~G~~l~~~~~~~~~~y~~~k~r~--~~~~~~~~~~~~~~~~~ 90 (93)
.+...+...+.++.....+..++++|. -+..++..+.+.|-+.|
T Consensus 9 wv~~~~m~~~~~~f~~~~~~~~~~~r~~~~~~~~I~~iA~~~Y~~m 54 (226)
T d1xioa_ 9 WIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAM 54 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 445566666666655544444443332 22233345555555444
No 9
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=4.59 E-value=1.2e+02 Score=14.53 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=4.8
Q ss_pred HHHHHHHh
Q 037762 27 CSLWVFYG 34 (93)
Q Consensus 27 ~~lW~~YG 34 (93)
..-|+.+|
T Consensus 57 ~~~~Ll~G 64 (65)
T d2croa_ 57 DPVWLQYG 64 (65)
T ss_dssp CHHHHHHC
T ss_pred CHHHHhhC
Confidence 45566666
No 10
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.48 E-value=1.9e+02 Score=12.37 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 037762 51 TGLAMEIAYITIF 63 (93)
Q Consensus 51 ~G~~l~~~~~~~~ 63 (93)
.|.++.++++.+|
T Consensus 3 lgavfyivfialf 15 (32)
T d2e74e1 3 LGAVFYIVFIALF 15 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHH
Confidence 3444444444443
Done!