Your job contains 1 sequence.
>037763
MKEKMMELYEAAKRAAMAAVWKEGGAEEAQCLDALDQLKNCSITYQLLVSTQVARHLVPM
LKHPCEKIQLFAIELIWTISLKQIYHLLECFRSAGICFPGYNGHEFPVKNEQVIPANHNN
GKLDQKKQTKEGRKITSALSADFSKAKVVKNVKVEEVINEYQGNVPNASNSLKCNDCIRE
IVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYR
CLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIF
SGIVSPKKIISGICKCGRCRHTRMSFISLRRHIACLNCNQYWDSTNPGIEVLPI
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037763
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 309 1.9e-39 2
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 227 7.9e-24 2
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 235 5.1e-19 2
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 166 8.8e-13 2
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 168 9.5e-13 2
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 167 9.9e-13 2
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 167 1.2e-12 2
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 167 1.3e-12 2
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 166 1.7e-12 2
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 166 1.7e-12 2
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 167 2.5e-12 2
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 167 5.1e-12 2
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 159 1.6e-11 2
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 157 6.4e-11 2
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 154 1.3e-10 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 155 5.6e-10 2
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 153 1.0e-09 2
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 150 1.7e-09 2
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 144 3.2e-09 2
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 143 5.5e-09 2
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 143 5.6e-09 2
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 139 6.3e-09 2
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 139 6.3e-09 2
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 138 8.3e-09 2
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 149 2.5e-08 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 158 3.0e-08 1
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 162 3.0e-08 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 144 3.3e-08 2
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 158 4.0e-08 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 140 4.4e-08 2
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 157 4.7e-08 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 130 4.8e-08 2
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 140 5.1e-08 2
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 158 8.5e-08 1
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 141 1.1e-07 1
UNIPROTKB|E9PPM7 - symbol:SPOCD1 "SPOC domain-containing ... 151 1.2e-07 1
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 144 1.8e-07 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 155 1.8e-07 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 141 1.9e-07 2
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 152 4.0e-07 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 128 4.1e-07 2
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 143 4.4e-07 2
FB|FBgn0082831 - symbol:pps "protein partner of snf" spec... 150 6.5e-07 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 150 6.5e-07 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 119 8.8e-07 2
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 138 9.4e-07 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 146 1.0e-06 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 128 1.3e-06 2
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 142 1.4e-06 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 136 1.5e-06 1
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 144 2.5e-06 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 125 2.9e-06 2
UNIPROTKB|F1MG39 - symbol:F1MG39 "Uncharacterized protein... 140 4.4e-06 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 124 4.8e-06 2
UNIPROTKB|F1LV22 - symbol:F1LV22 "Uncharacterized protein... 120 5.8e-06 2
POMBASE|SPAC20H4.03c - symbol:tfs1 "transcription elongat... 123 6.4e-06 2
UNIPROTKB|F1SV96 - symbol:SPOCD1 "Uncharacterized protein... 138 7.4e-06 1
TAIR|locus:2144211 - symbol:AT5G11430 species:3702 "Arabi... 135 1.3e-05 2
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 134 4.3e-05 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 134 4.4e-05 1
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 101 8.5e-05 1
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 128 0.00025 1
ASPGD|ASPL0000042794 - symbol:AN1777 species:162425 "Emer... 122 0.00031 1
UNIPROTKB|E1BCR2 - symbol:DIDO1 "Uncharacterized protein"... 126 0.00032 1
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 124 0.00035 1
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 124 0.00054 1
UNIPROTKB|F1LWI4 - symbol:F1LWI4 "Uncharacterized protein... 108 0.00063 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 113 0.00064 1
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 309 (113.8 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 69/187 (36%), Positives = 111/187 (59%)
Query: 166 PNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIY 225
P + LKCND +R+ +RE L AL +V+ EA +E V A DP++VA+SVES ++
Sbjct: 198 PKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE---SVNASDPLRVAVSVESLMF 254
Query: 226 ENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWY 285
E GRSTG K KYR ++FN+ D N + R++VL G + PEK++ ++A++MASDK +
Sbjct: 255 EKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRK--Q 312
Query: 286 ENLE-KERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRR---------HIAC 335
EN + KE+A + G+ + K + KCGRC + ++ ++ ++ C
Sbjct: 313 ENNQIKEKALFDCE--RGLAA--KASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
Query: 336 LNCNQYW 342
+NC+ +W
Sbjct: 369 VNCDNHW 375
Score = 128 (50.1 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 1 MKEKMMELYEXXXXXXXXXVWK---EGGAEEAQCLDALDQLKNCSITYQLLVSTQVARHL 57
M+ +++L+E G E +QC+DAL QLK +TY LV+TQV + L
Sbjct: 1 MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60
Query: 58 VPMLKHPCEKIQLFAIEL--IW 77
+ KHP E I+ A +L IW
Sbjct: 61 RSLAKHPVEDIKSVATDLLEIW 82
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 227 (85.0 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 52/123 (42%), Positives = 73/123 (59%)
Query: 165 VPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAI 224
+P + K D R+ VRE L +L+KV+ E + E+ +V ACDP VA+SVE+A+
Sbjct: 104 IPTHATMKKTGDSKRDKVREILQTSLAKVASEVV--DTEMKTRVTACDPWVVAVSVETAM 161
Query: 225 YENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLW 284
+EN G G K KYR +LFN+ D N + R+KVLLG + E++V M +EM S W
Sbjct: 162 FENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGSS----W 217
Query: 285 YEN 287
Y N
Sbjct: 218 YTN 220
Score = 61 (26.5 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 2 KEKMMELYEXXXXXXXXXVWKEGGAEEAQCLDALDQLKNC--SITYQLLVSTQVARHLVP 59
K + MEL+E E E ++ +DA+++LK S+ ++ T + + L
Sbjct: 3 KREFMELFEAALRAAKSVKGDENSPEVSRFVDAMNRLKEAPKSLVCDVVCKTSMGQGLEF 62
Query: 60 MLKHPCEKIQ 69
+ H KI+
Sbjct: 63 FIDHKNPKIR 72
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 235 (87.8 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 55/132 (41%), Positives = 79/132 (59%)
Query: 162 QGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVE 221
Q +P S K D R+ VRE L +L KV+ E + E+ +V ACDP VA+SVE
Sbjct: 590 QVKIPTHSTMKKTGDSKRDKVREILQTSLVKVASEIV--DTEMKTRVTACDPSVVAVSVE 647
Query: 222 SAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKM 281
SA++E G G +K KYR +LFN+ D N + R+KVL+G + E++V M +EM S+K+
Sbjct: 648 SAMFEKLGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKI 707
Query: 282 QLWYENLEKERA 293
Q + + KE A
Sbjct: 708 QKEVQRI-KENA 718
Score = 48 (22.0 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 2 KEKMMELYEXXXXXXXXXVWKEGGAEEAQCLDALDQLKNC--SITYQLLVSTQVARHL 57
K++ +ELYE + ++ ++ +DA ++LK+ S+ +++ T + + L
Sbjct: 493 KQEFLELYEAALRAAKSVKGVKNSSKVSRFVDARNRLKDAPTSLACEVVSKTSMGKGL 550
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 166 (63.5 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 161 YQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISV 220
Y + P A ++ +D +R RE L AL G D I D ++ +
Sbjct: 105 YVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYIAI-----GADEEELGSQI 151
Query: 221 ESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDK 280
E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMASD+
Sbjct: 152 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 211
Query: 281 MQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACL 336
++ +NL KE + +G G CK C +T++ S + + C
Sbjct: 212 LKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN 271
Query: 337 NCNQYW 342
C W
Sbjct: 272 ECGNRW 277
Score = 58 (25.5 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL ST++ + + K E++ A LI
Sbjct: 1 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI 49
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 168 (64.2 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 56/232 (24%), Positives = 90/232 (38%)
Query: 115 PANHNNGKLDQKKQTKEGRKITSALSADFSKAXXXXXXXXXXXXXXYQGNVPNASNSLKC 174
P+ + + +K+ + A S + Y + P A ++
Sbjct: 80 PSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPST--- 136
Query: 175 NDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGT 234
+D +R RE L AL G D I D ++ +E AIY+ +
Sbjct: 137 SDSVRLKCREMLAAAL-----RTGDDYVAI-----GADEEELGSQIEEAIYQEIRNTDMK 186
Query: 235 YKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAG 294
YK + R + N+ D N RK VL G + P+ MTA+EMASD+++ +NL KE
Sbjct: 187 YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
Query: 295 TNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G G CK C +T++ S + + C C W
Sbjct: 247 EHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
Score = 58 (25.5 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL ST++ + + K E++ A LI
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI 70
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 167 (63.8 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 161 YQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISV 220
Y + P A ++ +D +R RE L AL G D I D ++ +
Sbjct: 126 YVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYVAI-----GADEEELGSQI 172
Query: 221 ESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDK 280
E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMASD+
Sbjct: 173 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 232
Query: 281 MQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACL 336
++ +NL KE + +G G CK C +T++ S + + C
Sbjct: 233 LKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN 292
Query: 337 NCNQYW 342
C W
Sbjct: 293 ECGNRW 298
Score = 59 (25.8 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL ST++ + + K E++ A LI
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLI 70
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 167 (63.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 161 YQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISV 220
Y + P A ++ +D +R RE L AL G D I D ++ +
Sbjct: 125 YVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGEDYIAI-----GADEEELGSQI 171
Query: 221 ESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDK 280
E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMASD+
Sbjct: 172 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 231
Query: 281 MQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACL 336
++ +NL KE + +G G CK C +T++ S + + C
Sbjct: 232 LKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN 291
Query: 337 NCNQYW 342
C W
Sbjct: 292 ECGNRW 297
Score = 58 (25.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL ST++ + + K E++ A LI
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI 70
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 167 (63.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 161 YQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISV 220
Y + P A ++ +D +R RE L AL G D I D ++ +
Sbjct: 126 YVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYVAI-----GADEEELGSQI 172
Query: 221 ESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDK 280
E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMASD+
Sbjct: 173 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 232
Query: 281 MQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACL 336
++ +NL KE + +G G CK C +T++ S + + C
Sbjct: 233 LKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN 292
Query: 337 NCNQYW 342
C W
Sbjct: 293 ECGNRW 298
Score = 58 (25.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL ST++ + + K E++ A LI
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI 70
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 166 (63.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 161 YQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISV 220
Y + P A ++ +D +R RE L AL G D I D ++ +
Sbjct: 126 YVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYIAI-----GADEEELGSQI 172
Query: 221 ESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDK 280
E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMASD+
Sbjct: 173 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 232
Query: 281 MQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACL 336
++ +NL KE + +G G CK C +T++ S + + C
Sbjct: 233 LKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN 292
Query: 337 NCNQYW 342
C W
Sbjct: 293 ECGNRW 298
Score = 58 (25.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL ST++ + + K E++ A LI
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI 70
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 166 (63.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 161 YQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISV 220
Y + P A ++ +D +R RE L AL G D I D ++ +
Sbjct: 126 YVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYIAI-----GADEEELGSQI 172
Query: 221 ESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDK 280
E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMASD+
Sbjct: 173 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 232
Query: 281 MQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACL 336
++ +NL KE + +G G CK C +T++ S + + C
Sbjct: 233 LKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCN 292
Query: 337 NCNQYW 342
C W
Sbjct: 293 ECGNRW 298
Score = 58 (25.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL ST++ + + K E++ A LI
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI 70
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 167 (63.8 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 55/228 (24%), Positives = 94/228 (41%)
Query: 127 KQTKEGRKITSALSADFSKAXXXXXXXXXXXXXXYQGNVPNAS------NSLKCNDCIRE 180
K ++E +K ++ S + +A +G+ P+ S + +D +R
Sbjct: 88 KDSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSVRV 147
Query: 181 IVREKLYGALSKVSE--EAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFK 238
RE L AL + G D +E+ Q+ ++ I++ + YK +
Sbjct: 148 KCREMLSAALRTGDDYIAIGADEEELGSQIE---------EAKAPIFQELKNTDMKYKNR 198
Query: 239 YRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGR 298
R + N+ D N RK VL G + P+K MTA+EMASD+++ +NL KE +
Sbjct: 199 VRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQM 258
Query: 299 IFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+G G CK C +T++ S + + C C W
Sbjct: 259 AKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 306
Score = 56 (24.8 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 26 AEEAQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A A LD L +LKN +T +LL +T++ + + K E++ A LI
Sbjct: 23 ASLAGALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLI 74
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 167 (63.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 50/172 (29%), Positives = 77/172 (44%)
Query: 175 NDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGT 234
+D +R RE L AL + G D I CD ++ +E I+ + +
Sbjct: 145 SDSVRIKCREMLSNAL-----QTGDDYITIGSD---CD--ELGAQIEECIFLEFKNTDMK 194
Query: 235 YKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAG 294
YK + R + N+ D N R+ VL G V P++I MTA+EMASD+++ +NL KE
Sbjct: 195 YKNRVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKNLTKEAIR 254
Query: 295 TNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ SG G CK +C +T++ S + + C C W
Sbjct: 255 DHQVATSGGTQTDLFTCGKCKKKKCTYTQVQTRSADEPMTTFVFCNECGNRW 306
Score = 53 (23.7 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 32 LDALDQLKNCSITYQLLVSTQV 53
LD L +LKN +T +LL ST++
Sbjct: 29 LDLLKELKNIPMTLELLQSTRI 50
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 159 (61.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 55/226 (24%), Positives = 93/226 (41%)
Query: 127 KQTKEGRKITSALSADFSKAXXXXXXXXXXXXXXYQGNVPNAS------NSLKCNDCIRE 180
K ++E +K ++ S + +A +G+ P+ S + +D +R
Sbjct: 63 KDSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSVRV 122
Query: 181 IVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYR 240
RE L AL G D I D ++ ++ + I++ + YK + R
Sbjct: 123 KCREMLSAAL-----RTGDDYIAI-----GADEEELE-TIHTPIFQELKNTDMKYKNRVR 171
Query: 241 CLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIF 300
+ N+ D N RK VL G + P+K MTA+EMASD+++ +NL KE +
Sbjct: 172 SRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQMAK 231
Query: 301 SGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+G G CK C +T++ S + + C C W
Sbjct: 232 TGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 277
Score = 55 (24.4 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
A LD L +LKN +T +LL +T++ + + K E++ A LI
Sbjct: 1 AGALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLI 49
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 157 (60.3 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 47/171 (27%), Positives = 74/171 (43%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + H Q D +A +E IY+ + + Y
Sbjct: 138 DSVRTKCRELLVAALQT---DGDH-------QTIGADCEHMAAQIEDYIYQEFKSTDMKY 187
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N + R+ VL G + PE+I +MTA+EMAS +++ + L KE
Sbjct: 188 KTRLRSRISNLKDQKNPDLRRNVLCGNISPERIASMTAEEMASPELKEIRKALTKESIRE 247
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ G + G CK C +T++ S + + C C W
Sbjct: 248 HQLSKVGGTETDMFVCGKCKGKNCTYTQVQTRSADEPMTTFVLCNECGNRW 298
Score = 54 (24.1 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
+D L +LKN ++ + L ST++ + + K E++Q A LI
Sbjct: 27 IDLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDEEVQTLAKSLI 72
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 43/140 (30%), Positives = 64/140 (45%)
Query: 212 DPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNM 271
DP +A +E AIY + YK + R L N+ DP N E R+K LLG++ PE++ M
Sbjct: 28 DPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKM 87
Query: 272 TAKEMASDKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLR- 330
T +EMASD M+ + ++ N + + K + KC RC S + +R
Sbjct: 88 TPEEMASDDMKQMRQKYVQD--SINAAQMAKVQGTK---TDQFKCERCDKRNCSQLHIRD 142
Query: 331 ------RHIACLNCNQYWDS 344
+ C C W S
Sbjct: 143 GDEPIITFVICDECGNRWKS 162
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 155 (59.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 44/171 (25%), Positives = 77/171 (45%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ I D +++ +E I+ + G + Y
Sbjct: 136 DAVRNKCREMLTAAL-----QTDHDHVAI-----GADCERLSAQIEECIFRDVGNTDMKY 185
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N + R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 186 KNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 245
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G G C+ C +T++ S + + C C W
Sbjct: 246 HQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
Score = 47 (21.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
+D L +LK IT LL ST+V + + K E++ A LI
Sbjct: 28 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLI 73
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 153 (58.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 47/171 (27%), Positives = 76/171 (44%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ I D +A +E I+ + G + Y
Sbjct: 137 DAVRTKCREMLTAAL-----QTDHDHVAI-----GADCECLAGQIEECIFRDVGNTDMKY 186
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R L N+ D N R+KVL G + P++I MT++EMASD+++ + + KE
Sbjct: 187 KNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 246
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G G C+ C +T++ S + + C C W
Sbjct: 247 HQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 297
Score = 47 (21.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
+D L +LK +T LL ST+V + + K E++ A LI
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLI 73
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 150 (57.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 43/171 (25%), Positives = 76/171 (44%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ + D ++ +E I+ + G + Y
Sbjct: 113 DAVRNKCREMLTAAL-----QTDHDHMAV-----GADCEGLSAQIEECIFRDVGNTDMKY 162
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N + R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 163 KNRVRSRISNLKDAKNPDLRRNVLCGVITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 222
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G G C+ C +T++ S + + C C W
Sbjct: 223 HQMARTGGTQTDLFTCGRCRRKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 273
Score = 46 (21.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
+D L +LK +T LL ST+V + + K E++ A LI
Sbjct: 4 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLI 49
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 144 (55.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 40/148 (27%), Positives = 70/148 (47%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ I D +++ +E I+ + G + Y
Sbjct: 109 DAVRNKCREMLTAAL-----QTDHDHVAI-----GADCERLSAQIEECIFRDVGNTDMKY 158
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N + R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 159 KNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 218
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRHTR 323
+ +G G C+ C +T+
Sbjct: 219 HQMARTGGTQTDLFTCGKCRKKNCTYTQ 246
Score = 47 (21.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
+D L +LK IT LL ST+V + + K E++ A LI
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLI 46
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 143 (55.4 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 45/165 (27%), Positives = 73/165 (44%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
VR+K LS + DN + D CD ++A +E IY+ + Y+ + R
Sbjct: 186 VRDKCVEMLSAALK--AEDNFK--DYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRS 239
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFS 301
+ N+ DP N R+ VL G + PE I MTA+EMASD+++ + +E + +
Sbjct: 240 RISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 299
Query: 302 GIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
G + + CK C + TR + + + C C W
Sbjct: 300 GGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 344
Score = 55 (24.4 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEK 67
LD L +L +C ++ QLL +T++ + + KH +K
Sbjct: 27 LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 143 (55.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 46/165 (27%), Positives = 74/165 (44%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
VR+K LS + +A D K D CD ++A +E IY+ + Y+ + R
Sbjct: 187 VRDKCVEMLS-AALKAEDDFK---DYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRS 240
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFS 301
+ N+ DP N R+ VL G + PE I MTA+EMASD+++ + +E + +
Sbjct: 241 RISNLKDPRNPGLRRNVLSGTISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 300
Query: 302 GIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
G + + CK C + TR + + + C C W
Sbjct: 301 GGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
Score = 55 (24.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEK 67
LD L +L +C ++ QLL +T++ + + KH +K
Sbjct: 27 LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 139 (54.0 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 44/175 (25%), Positives = 80/175 (45%)
Query: 172 LKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRS 231
+ C D +R RE L AL + HD+ + V +C+ ++ +E I+ + G +
Sbjct: 133 ITC-DAVRNKCREMLTLAL-----QTDHDHVAV--GV-SCE--HLSSQIEECIFLDVGNT 181
Query: 232 TGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKE 291
YK + R + N+ D N R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 182 DMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE 241
Query: 292 RAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G C+ C +T++ S + ++ C C W
Sbjct: 242 AIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
Score = 56 (24.8 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAI 73
+D L +LKN IT LL ST+V + + K ++ +L A+
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE-ELIAL 67
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 139 (54.0 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 44/175 (25%), Positives = 80/175 (45%)
Query: 172 LKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRS 231
+ C D +R RE L AL + HD+ + V +C+ ++ +E I+ + G +
Sbjct: 133 ITC-DAVRNKCREMLTLAL-----QTDHDHVAV--GV-SCE--HLSSQIEECIFLDVGNT 181
Query: 232 TGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKE 291
YK + R + N+ D N R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 182 DMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE 241
Query: 292 RAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G C+ C +T++ S + ++ C C W
Sbjct: 242 AIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
Score = 56 (24.8 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAI 73
+D L +LKN IT LL ST+V + + K ++ +L A+
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE-ELIAL 67
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 138 (53.6 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 44/175 (25%), Positives = 79/175 (45%)
Query: 172 LKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRS 231
+ C D +R RE L AL + HD+ + V C+ ++ +E I+ + G +
Sbjct: 133 ITC-DAVRNKCREMLTLAL-----QTDHDHVAV--GVN-CE--HLSSQIEECIFLDVGNT 181
Query: 232 TGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKE 291
YK + R + N+ D N R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 182 DMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE 241
Query: 292 RAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G C+ C +T++ S + ++ C C W
Sbjct: 242 AIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
Score = 56 (24.8 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAI 73
+D L +LKN IT LL ST+V + + K ++ +L A+
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE-ELIAL 67
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 149 (57.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/93 (33%), Positives = 55/93 (59%)
Query: 199 HDNKEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKK 257
H +E+ D V + + ++ +A +E+A+++ + G YK KYR LLFN+ DP N + K
Sbjct: 38 HSLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLK 97
Query: 258 VLLGRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
V+ G V P +V M++ ++A ++ W + EK
Sbjct: 98 VVHGDVTPYDLVRMSSMQLAPQELARWRDQEEK 130
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 42/122 (34%), Positives = 65/122 (53%)
Query: 164 NV-PNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVES 222
NV P AS S D IR+ VR L L K ++ N ++ ++ A +VA +E
Sbjct: 181 NVHPAASASKPSADQIRQSVRHSLKDILMKRLTDS---NLKVPEEKAA----KVATKIEK 233
Query: 223 AIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQ 282
++ + + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++
Sbjct: 234 ELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELA 293
Query: 283 LW 284
W
Sbjct: 294 AW 295
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 162 (62.1 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 40/121 (33%), Positives = 64/121 (52%)
Query: 164 NVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESA 223
+VP S S D IR+ VR L L + E+ N ++ ++ A +VA +E
Sbjct: 915 HVPTTSTSKPSADQIRQSVRHSLKDILMRRLTES---NLKVPEEKAA----KVATKIEKE 967
Query: 224 IYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQL 283
++ + + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++
Sbjct: 968 LFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAA 1027
Query: 284 W 284
W
Sbjct: 1028 W 1028
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 144 (55.7 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 49/178 (27%), Positives = 76/178 (42%)
Query: 169 SNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENW 228
S L+ D IR+ E L AL D K D C+ + +E IY+
Sbjct: 239 SPRLQTGDSIRDKCIEMLTAAL-----RTDDDYK---DYGTNCEAM--GAEIEDYIYQET 288
Query: 229 GRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENL 288
+ YK + R + N+ DP N RK VL G ++ +I +MTA+EMASD+++ L
Sbjct: 289 KATDMKYKNRVRSRISNLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDELKQLRNVL 348
Query: 289 EKERAGTNGRIFSGIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
+E + +G + + G CK C + TR + + + C C W
Sbjct: 349 TQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 406
Score = 49 (22.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKH 63
LD L +LK+ ++T +LL T++ + + KH
Sbjct: 27 LDLLRELKDFNMTLKLLQDTRIGMSVNGIRKH 58
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 158 (60.7 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 42/122 (34%), Positives = 65/122 (53%)
Query: 164 NV-PNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVES 222
NV P AS S D IR+ VR L L K ++ N ++ ++ A +VA +E
Sbjct: 726 NVHPAASASKPSADQIRQSVRHSLKDILMKRLTDS---NLKVPEEKAA----KVATKIEK 778
Query: 223 AIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQ 282
++ + + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++
Sbjct: 779 ELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELA 838
Query: 283 LW 284
W
Sbjct: 839 AW 840
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 140 (54.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 47/172 (27%), Positives = 76/172 (44%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGT- 234
D +R RE L AL + HD+ I C+ + I E +++ G T
Sbjct: 138 DAVRTKCREMLTAAL-----QTDHDHVAIGAD---CECLAGQIE-EYILWQGVGFGTDMK 188
Query: 235 YKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAG 294
YK + R L N+ D N R+KVL G + P++I MT++EMASD+++ + + KE
Sbjct: 189 YKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIR 248
Query: 295 TNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G G C+ C +T++ S + + C C W
Sbjct: 249 EHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 300
Score = 47 (21.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
+D L +LK +T LL ST+V + + K E++ A LI
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLI 73
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 157 (60.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 212 DPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNM 271
DP +A +E +++ +G YK K R LLFN+ D N E R+ V+ G++ PE++ NM
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418
Query: 272 TAKEMASDKMQLWYENLEKERA 293
TA+E+AS ++ W + +E A
Sbjct: 419 TAEELASKELSQWRQAKAEEMA 440
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 130 (50.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 45/175 (25%), Positives = 78/175 (44%)
Query: 172 LKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRS 231
+ C D +R RE L AL + HD+ + V +C+ + I E + + G
Sbjct: 107 ITC-DAVRNKCREMLTLAL-----QTDHDHVAV--GV-SCEHLSSQIE-EYILLDLSGSQ 156
Query: 232 TGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKE 291
G YK + R + N+ D N R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 157 IG-YKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE 215
Query: 292 RAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIACLNCNQYW 342
+ +G C+ C +T++ S + ++ C C W
Sbjct: 216 AIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 270
Score = 56 (24.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAI 73
+D L +LKN IT LL ST+V + + K ++ +L A+
Sbjct: 1 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE-ELIAL 41
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 140 (54.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 43/149 (28%), Positives = 69/149 (46%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL +A D I D +A +E IY++ + Y
Sbjct: 165 DAVRNKCREMLTTAL-----QADDDYIAI-----GADCEHIAAQIEECIYQDIKNTDMKY 214
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N E +K VL G + PE+I MT++EMAS++++ + + KE
Sbjct: 215 KNRVRSRISNLKDSKNPELKKNVLCGAITPEQIAVMTSEEMASNELKEIRKAMTKEAIRE 274
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRHTRM 324
+ +G G CK C +T++
Sbjct: 275 HQMAKTGGTQTDLFTCGKCKKKNCTYTQV 303
Score = 47 (21.6 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI 76
+D L +LK+ +T LL ST++ + + K E++ A LI
Sbjct: 53 MDLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEEVIALAKSLI 98
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 158 (60.7 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 42/122 (34%), Positives = 65/122 (53%)
Query: 164 NV-PNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVES 222
NV P AS S D IR+ VR L L K ++ N ++ ++ A +VA +E
Sbjct: 912 NVHPAASASKPSADQIRQSVRHSLKDILMKRLTDS---NLKVPEEKAA----KVATKIEK 964
Query: 223 AIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQ 282
++ + + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++
Sbjct: 965 ELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELA 1024
Query: 283 LW 284
W
Sbjct: 1025 AW 1026
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 141 (54.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/106 (29%), Positives = 62/106 (58%)
Query: 202 KEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLL 260
+E+ D V + ++ +A +E+A+++ + G Y+ KYR LLFN+ DP N + KV+
Sbjct: 9 QELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIH 68
Query: 261 GRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFSGIVSP 306
G V P+ +V M + ++A ++ W + ++E+ G+ + G ++P
Sbjct: 69 GDVTPQGLVRMNSVQLAPQELARWRD--QEEKRGSMVSVDCGPLAP 112
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 32/99 (32%), Positives = 59/99 (59%)
Query: 199 HDNKEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKK 257
H +E+ D V + + ++ +A +E+A+++ + G YK KYR LLFN+ DP N + K
Sbjct: 59 HSLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLK 118
Query: 258 VLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTN 296
V+ G V P +V M++ ++A ++ W + ++E+ G N
Sbjct: 119 VVHGDVTPYDLVRMSSMQLAPQELARWRD--QEEKRGLN 155
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 144 (55.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/140 (22%), Positives = 70/140 (50%)
Query: 214 IQVAISVESAIYEN-WGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMT 272
+++AI +E+ +Y++ + + + +Y+ + R N+ + N E R+++L ++ P + MT
Sbjct: 169 LRIAIEIEAEVYKSEYSKVSDSYRNRLRSFTMNLRNKKNPELRERILSKQILPAAFIKMT 228
Query: 273 AKEMASDKMQLWYENLEKERAGTNGRIFSGI-VSPKKIISGICKCGRCRHTRMSFISLRR 331
EMA + ++ E L K+ +F + K+ ++ CG+C+H ++S+ ++
Sbjct: 229 PNEMAPEALKKEIEKLHKQN------LFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQT 282
Query: 332 HIA---------CLNCNQYW 342
A C NC W
Sbjct: 283 RSADEPLTTFCTCENCGNRW 302
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 155 (59.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 42/123 (34%), Positives = 68/123 (55%)
Query: 164 NV-PNASNSLKCN-DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVE 221
NV P A+ ++K + D IR+ VR L L K ++ N +I ++ A +VA +E
Sbjct: 894 NVHPPAAAAIKPSADQIRQSVRHSLKDILMKRLTDS---NLKIPEEKSA----KVATKIE 946
Query: 222 SAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKM 281
++ + + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++
Sbjct: 947 KELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKEL 1006
Query: 282 QLW 284
W
Sbjct: 1007 AAW 1009
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 141 (54.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 39/138 (28%), Positives = 66/138 (47%)
Query: 212 DPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNM 271
DP ++A+ +E +Y + +Y R +FN+ D N R+ VL G V+ EK M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 272 TAKEMASDKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGIC-KCGR--CRHTRMSFIS 328
T++EMAS +++ + KE A ++ +P + C KCG+ C +T++ S
Sbjct: 231 TSEEMASAEIREMRDKFTKE-AILEHQMSVQQGTPSDMFK--CGKCGKKNCTYTQLQTRS 287
Query: 329 ----LRRHIACLNCNQYW 342
+ + CL C W
Sbjct: 288 SDEPMTTFVFCLECGNRW 305
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 25 GAEEA-QCLDALDQLKNCSITYQLLVSTQV 53
G E QC LDQL ++ +++ T +
Sbjct: 21 GMESVEQCNKLLDQLSKIPMSIEIIQKTNI 50
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 152 (58.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 40/121 (33%), Positives = 62/121 (51%)
Query: 164 NVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESA 223
++PN S D IR V++ L L K D+ I + RA +VA +E
Sbjct: 906 HLPNVPASKPSADQIRHSVKQSLKEILMKRLT----DSSLKIPEERAA---KVATRIERE 958
Query: 224 IYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQL 283
++ + + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++
Sbjct: 959 LFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIKMSPEELASKELAA 1018
Query: 284 W 284
W
Sbjct: 1019 W 1019
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 128 (50.1 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 44/165 (26%), Positives = 71/165 (43%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
VR+K LS + +A D K D CD ++A +E IY+ + Y+ + R
Sbjct: 187 VRDKCVEMLS-AALKADDDYK---DYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRS 240
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFS 301
+ N+ DP N R+ VL G + I MTA+EMASD+++ + +E + +
Sbjct: 241 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 300
Query: 302 GIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
G + CK C + TR + + + C C W
Sbjct: 301 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
Score = 54 (24.1 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEK 67
LD L +L +C ++ QLL +T++ + + KH +K
Sbjct: 27 LDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 143 (55.4 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 28/82 (34%), Positives = 51/82 (62%)
Query: 212 DPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNM 271
DP +A +E+ +++ +G YK K R LLFN+ D +N + R+KV+ G + E++ +M
Sbjct: 315 DPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSM 374
Query: 272 TAKEMASDKMQLWYENLEKERA 293
+A+E+AS ++ W + +E A
Sbjct: 375 SAEELASKELAEWRQAKAEEMA 396
Score = 47 (21.6 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 178 IREIVREKLYGALSKVSEEAGHDNK-EIIDQVRACDPIQVAIS 219
+R +RE L GAL+ V + N+ +++D +P++ +S
Sbjct: 157 VRSKMRESLAGALAMVQCQMDVPNESKMLDSETVANPLEGHVS 199
>FB|FBgn0082831 [details] [associations]
symbol:pps "protein partner of snf" species:7227 "Drosophila
melanogaster" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR006576 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 Pfam:PF07533 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00592 EMBL:AE014297
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 GO:GO:0016817 RefSeq:NP_650193.1
ProteinModelPortal:Q9VG78 SMR:Q9VG78 IntAct:Q9VG78 MINT:MINT-985343
STRING:Q9VG78 PRIDE:Q9VG78 EnsemblMetazoa:FBtr0082586 GeneID:41524
KEGG:dme:Dmel_CG6525 UCSC:CG6525-RA CTD:41524 FlyBase:FBgn0082831
InParanoid:Q9VG78 OrthoDB:EOG4CRJDW PhylomeDB:Q9VG78
GenomeRNAi:41524 NextBio:824247 ArrayExpress:Q9VG78 Bgee:Q9VG78
Uniprot:Q9VG78
Length = 2016
Score = 150 (57.9 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 178 IREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGT-YK 236
IR +RE+L + + + + + Q +VE ++ ++GR G YK
Sbjct: 1278 IRRSLREQLLARIKEAQAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYK 1337
Query: 237 FKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYE 286
KYR L+FNI D NR +K+ +V+P ++V MT +++AS ++ W E
Sbjct: 1338 AKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWRE 1387
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 150 (57.9 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 51/181 (28%), Positives = 81/181 (44%)
Query: 106 FPVKNEQVIPANHNNGKLDQKKQTKEGRK-ITSALSADFSKAXXXXXXXXXXXXXXYQGN 164
F + V+P + K +K TKE I + A A G
Sbjct: 847 FRKMGQPVLPRRSSEEK--SEKMTKESTTVICTGEKASKPGAHEKQEIKKKKTEKGLPGV 904
Query: 165 VPNASNSLKCN-DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESA 223
P A + K + D IR+ VR L L K ++ N ++ ++ A +VA +E
Sbjct: 905 HPPAVPASKPSADQIRQSVRHSLKDILMKRLTDS---NLKVPEEKAA----KVATKIEKE 957
Query: 224 IYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQL 283
++ + + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++
Sbjct: 958 LFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAA 1017
Query: 284 W 284
W
Sbjct: 1018 W 1018
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 119 (46.9 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 211 CDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVN 270
CDP VA+SVESA+ +LFN+ D N + R+KVL+G + E++V
Sbjct: 148 CDPWVVAVSVESAM----------------SILFNMGDSNNPDLRRKVLIGEISGERLVK 191
Query: 271 MTAKEMASDKMQLWYENLEKERA 293
M EM S+K+Q + + KERA
Sbjct: 192 MEKDEMGSEKIQKEVQRI-KERA 213
Score = 53 (23.7 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 2 KEKMMELYEXXXXXXXXXVWKEGGAEEAQCLDALDQLKNC--SITYQLLVSTQVARHLVP 59
+ + +EL+E E E + +DA+++LK S+ ++ T + + L
Sbjct: 3 RREFLELFEAALRAAKSVKGAESSPEVLRFVDAMNRLKEAPKSLVCDVVCKTSMGKGLGF 62
Query: 60 MLKHPCEKIQ 69
+ H KI+
Sbjct: 63 FIDHKNPKIR 72
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 138 (53.6 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 50/222 (22%), Positives = 89/222 (40%)
Query: 117 NHNNGKLDQKKQTKEGRKITSALSADFSKAXXXXXXXXXXXXXXYQGNVPNASNSLKCN- 175
N+++ K + + ++A S+ +G+ ++ S
Sbjct: 89 NNSSAKEGSSNNSSASKSTSAAKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSFPSGG 148
Query: 176 --DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRAC-DPIQVAISVESAIYENWGRST 232
D +R RE L AL K+ E C +P ++A +E AIY + +
Sbjct: 149 MTDAVRIKCREMLATAL-KIGEVP-----------EGCGEPEEMAAELEDAIYSEFNNTD 196
Query: 233 GTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKER 292
YK + R + N+ DP N R + G V +++ MT +EMASD+M+ E KE
Sbjct: 197 MKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKE- 255
Query: 293 AGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRHIA 334
N + + K + + KC +C+ ++ L+ A
Sbjct: 256 -AINDAQLATVQGTK---TDLLKCAKCKKRNCTYNQLQTRSA 293
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 146 (56.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 31/96 (32%), Positives = 58/96 (60%)
Query: 202 KEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLL 260
+E+ D V + + ++ +A +E+A+++ + G YK KYR LLFN+ DP N + KV+
Sbjct: 625 RELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVH 684
Query: 261 GRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTN 296
G V P +V M++ ++A ++ W + ++E+ G N
Sbjct: 685 GDVTPYDLVRMSSMQLAPQELARWRD--QEEKRGLN 718
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 128 (50.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 44/165 (26%), Positives = 71/165 (43%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
VR+K LS + +A D K D CD ++A +E IY+ + Y+ + R
Sbjct: 188 VRDKCVEMLS-AALKADDDYK---DYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRS 241
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFS 301
+ N+ DP N R+ VL G + I MTA+EMASD+++ + +E + +
Sbjct: 242 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 301
Query: 302 GIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
G + CK C + TR + + + C C W
Sbjct: 302 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 346
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAIELIWTISLKQI 84
LD L +L + ++ QLL +T++ + + KH C ++ A+ + + KQ+
Sbjct: 27 LDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKH-CSNKEVVALAKVLIRNWKQL 78
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/90 (33%), Positives = 54/90 (60%)
Query: 202 KEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLL 260
+E+ D V + + ++ +A +E+A++ ++ YK KYR LLFN+ DP N + KV+
Sbjct: 121 QELPDLVLSEEAVEGIAAGIETALFNLTQTTSCRYKTKYRSLLFNLRDPRNPDLFLKVVR 180
Query: 261 GRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
G V PE +V M++ ++A ++ W + EK
Sbjct: 181 GDVTPEDLVQMSSIQLAPQELACWRDQEEK 210
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 36/136 (26%), Positives = 66/136 (48%)
Query: 217 AISVESAIYENWGRSTGT-YKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKE 275
A +VE+A Y+ +G T Y+ K R L N+ + +N R +VL V PE+ V MT +E
Sbjct: 172 AAAVEAAAYDAYGPETKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHEE 231
Query: 276 MASDKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRHIA- 334
+ SD+ + ++KE + + ++ IS +CG+C ++++ + A
Sbjct: 232 LRSDEQREKDRKIQKENMDK-----AMVAQAERSISTSLQCGKCGQRKVTYTEAQTRSAD 286
Query: 335 --------CLNCNQYW 342
C++C + W
Sbjct: 287 EPMTLFCTCMHCGKSW 302
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 144 (55.7 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 40/107 (37%), Positives = 55/107 (51%)
Query: 178 IREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKF 237
IR VR+ L L K S+E+ D K D+ P +VA E ++ + YK
Sbjct: 755 IRRSVRDSLEEILLKRSKES--DLKISSDR-----PAEVARRTEKELFALFQGVDSKYKN 807
Query: 238 KYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLW 284
KYR L FN+ D N K+VL G V P +V MTA+E+AS ++ W
Sbjct: 808 KYRSLTFNLKDAKNNVLFKRVLKGEVSPADLVRMTAEELASKELAAW 854
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 125 (49.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 42/164 (25%), Positives = 71/164 (43%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
VR+K LS + +A D K D CD ++A +E IY+ + Y+ + R
Sbjct: 188 VRDKCVEMLS-AALKADDDYK---DYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRS 241
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFS 301
+ N+ DP N R+ VL G + I MTA+EMASD+++ + +E + +
Sbjct: 242 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 301
Query: 302 GIVSPKKIISGICKCGRCRHTRMSFIS---LRRHIACLNCNQYW 342
G + CK C + ++ + + + C C W
Sbjct: 302 GGTTTDLFQCSKCKKKNCTYNQVQTRTDEPMTTFVLCNECGNRW 345
Score = 49 (22.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAIELIWTISLKQI 84
LD L +L + ++ QLL +T++ + + KH C ++ A+ + + KQ+
Sbjct: 27 LDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKH-CSNKEVVALAKVLIRNWKQL 78
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 140 (54.3 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 216 VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKE 275
+A +E+A++ + G YK KYR LLFN+ DP N E KV+ G + P +V M++ +
Sbjct: 574 IAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVHGDITPHGLVRMSSVQ 633
Query: 276 MASDKMQLWYENLEK 290
+A ++ W + EK
Sbjct: 634 LAPQELARWRDQEEK 648
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 124 (48.7 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 44/165 (26%), Positives = 70/165 (42%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
VR+K LS + +A D K D CD ++A +E I E + Y+ + R
Sbjct: 187 VRDKCVEMLS-AALKAEDDYK---DYGVNCD--KMASEIEDHILEELKSTDMKYRNRVRS 240
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFS 301
+ N+ DP N R+ VL G + I MTA+EMASD+++ + +E + +
Sbjct: 241 RISNLKDPRNPSLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 300
Query: 302 GIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
G + CK C + TR + + + C C W
Sbjct: 301 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
Score = 48 (22.0 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEK 67
L L +L +C ++ QLL +T++ + + KH +K
Sbjct: 27 LGLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
>UNIPROTKB|F1LV22 [details] [associations]
symbol:F1LV22 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 IPI:IPI00199082
Ensembl:ENSRNOT00000010872 Uniprot:F1LV22
Length = 280
Score = 120 (47.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 49/183 (26%), Positives = 75/183 (40%)
Query: 161 YQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISV 220
Y +VP A ++ +D +R RE L AL G D I D ++ +
Sbjct: 114 YASSVPRAPST---SDSVRLKCRETLAAAL-----RTGDDYVAI-----GADEEELGSQI 160
Query: 221 ESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDK 280
E AIY+ + YK R + NI D N VL G++ P+ M A+EMASD+
Sbjct: 161 EEAIYKEIRNTDKKYKSPERTRISNIKDAKNPN---NVLCGKISPDLFARMRAEEMASDE 217
Query: 281 MQLWYENLE-KERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRHIACLNCN 339
++ E + + G + SG + G CK C +T++ S + C
Sbjct: 218 LKKDKEKPDQRSHQGVSETKTSG--TQTDWFCGKCK-KNCTYTQVQTRSADEQMTTFACA 274
Query: 340 QYW 342
W
Sbjct: 275 NRW 277
Score = 48 (22.0 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 33 DALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELI--WTISLKQ 83
D +LKN + +LL ST+ + + +LK E++ A LI W I L +
Sbjct: 29 DMPKELKNICMPLELLQSTRFGKSVNAILKQSTDEEVISLAKSLIKSWKILLDE 82
>POMBASE|SPAC20H4.03c [details] [associations]
symbol:tfs1 "transcription elongation factor TFIIS"
species:4896 "Schizosaccharomyces pombe" [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 PomBase:SPAC20H4.03c
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
GO:GO:0000991 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006379
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EMBL:U20526 PIR:S63845 RefSeq:NP_593623.1 ProteinModelPortal:P49373
SMR:P49373 STRING:P49373 EnsemblFungi:SPAC20H4.03c.1 GeneID:2541941
KEGG:spo:SPAC20H4.03c OrthoDB:EOG4CC79J NextBio:20803025
Uniprot:P49373
Length = 293
Score = 123 (48.4 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/106 (24%), Positives = 53/106 (50%)
Query: 229 GRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENL 288
G++ Y+ + R L N+ D N + R VL + P+++ MT+ E+AS+ + L
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKL 232
Query: 289 EKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRHIA 334
E+E + P+K ++ + CG+C+ ++S+ ++ A
Sbjct: 233 EQENL-----FHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSA 273
Score = 45 (20.9 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 32 LDALDQLKNCSI-TYQLLVSTQVARHLVPMLKHPCEKIQLFAIELI 76
++ + +LKN + T +LL T++ + + HP EK+ A E++
Sbjct: 26 INIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGEQAREIV 71
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 138 (53.6 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 202 KEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLL 260
+E+ D V + ++ +A +E+A+++ + G Y+ KYR LLFN+ DP N + KV+
Sbjct: 560 QELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIH 619
Query: 261 GRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
G V P+ +V M + ++A ++ W + EK
Sbjct: 620 GDVTPQGLVRMNSVQLAPQELARWRDQEEK 649
>TAIR|locus:2144211 [details] [associations]
symbol:AT5G11430 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
EMBL:CP002688 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 UniGene:At.69010
IPI:IPI00547412 RefSeq:NP_196704.2 UniGene:At.5125 UniGene:At.73156
ProteinModelPortal:F4JXV3 SMR:F4JXV3 PRIDE:F4JXV3
EnsemblPlants:AT5G11430.1 GeneID:831014 KEGG:ath:AT5G11430
OMA:VITQENT Uniprot:F4JXV3
Length = 873
Score = 135 (52.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 212 DPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNM 271
DP +A +E +Y+ +G Y+ + R LLFN+ D N E R++V+ + E++ +M
Sbjct: 260 DPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSM 319
Query: 272 TAKEMASDKMQLWYENLEKERA 293
TA+E+AS ++ W + +E A
Sbjct: 320 TAEELASKELSQWRQAKAEEMA 341
Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 164 NVPNASNSLKC----NDCIREIVREKLYGALSKVSEE 196
+VP S+K N+ +R +RE L AL+ V ++
Sbjct: 93 HVPPPQRSVKAMEEVNESVRSKMRESLASALALVKKD 129
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 134 (52.2 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 27/109 (24%), Positives = 61/109 (55%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
+R+ + +L ++ + +D+ +++ + + +VA+++E ++ + + YK KYR
Sbjct: 691 IRQNIRRSLKEILWKRVNDSDDLV--MTESEVGKVALNIEKEMFNLFHVTDNRYKSKYRS 748
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
++FN+ DP N+ +VL G + K+V M +E+ S ++ +W E K
Sbjct: 749 IMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKELSVWKEKPAK 797
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 134 (52.2 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/109 (24%), Positives = 61/109 (55%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
+R+ + +L ++ + +D+ +++ + + +VA+++E ++ + + YK KYR
Sbjct: 691 IRQNIRRSLKEILWKRVNDSDDLV--MTESEVGKVALNIEKEMFNLFHVTDNRYKSKYRS 748
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
++FN+ DP N+ +VL G + K+V M +E+ S ++ +W E K
Sbjct: 749 IMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKELSVWKEKPAK 797
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 101 (40.6 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 222 SAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKM 281
S IY+ + Y+ + R + N+ DP N R+ VL G + I MTA+EMASD++
Sbjct: 9 SHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 68
Query: 282 QLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRM 324
+ + +E + +G + CK C + ++
Sbjct: 69 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQV 111
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 215 QVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAK 274
++A+ +E ++ + YK KYR L+FN+ DP N+ +V+ G + P ++V ++ +
Sbjct: 792 RLAVGIEKEMFNLCMNTDNKYKNKYRSLMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPE 851
Query: 275 EMASDKMQLWYENLEKERA-GTNGRIFSG 302
E+ S ++ W ++ E++ +GR SG
Sbjct: 852 ELLSKELSDWRKSESSEKSLDKSGRSHSG 880
>ASPGD|ASPL0000042794 [details] [associations]
symbol:AN1777 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 GO:GO:0046872 EMBL:BN001307
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 OrthoDB:EOG4PRX19 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 EMBL:AACD01000028
RefSeq:XP_659381.1 ProteinModelPortal:Q5BCF3
EnsemblFungi:CADANIAT00008424 GeneID:2875165 KEGG:ani:AN1777.2
eggNOG:NOG45011 HOGENOM:HOG000215957 OMA:ERDMICC Uniprot:Q5BCF3
Length = 889
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 215 QVAISVESAIYENW----GRSTG-TYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIV 269
Q+ ISVE A+Y+N G +T YK + R +LFN+ N R ++L+G + P+ +
Sbjct: 323 QLGISVEEALYQNLMGGGGEATSEAYKIQLRAILFNVKK--NPSLRDRLLVGSLTPDALS 380
Query: 270 NMTAKEMASDKMQLWYENLEKE 291
M+++EMAS+++Q +++E
Sbjct: 381 RMSSQEMASEELQQKDAEIKRE 402
>UNIPROTKB|E1BCR2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:DAAA02036239 IPI:IPI00971510 RefSeq:XP_003586878.1
UniGene:Bt.14503 Ensembl:ENSBTAT00000007879 GeneID:519826
KEGG:bta:519826 Uniprot:E1BCR2
Length = 2196
Score = 126 (49.4 bits), Expect = 0.00032, P = 0.00032
Identities = 27/109 (24%), Positives = 59/109 (54%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
+R+ + +L ++ + +D+ ++I + + ++A+ +E ++ + + YK KYR
Sbjct: 672 IRQNIRRSLKEILWKRVNDSDDLI--MTENEVGKIALLIEKEMFNLFRVTDNRYKSKYRS 729
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
L+FN+ DP N+ +VL + K+V M +E+ S ++ +W E K
Sbjct: 730 LMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSVWRERTTK 778
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 124 (48.7 bits), Expect = 0.00035, P = 0.00035
Identities = 27/120 (22%), Positives = 62/120 (51%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
+R+ + +L ++ + +D+ ++I + + ++A+ +E ++ + + YK KYR
Sbjct: 679 IRQNIRRSLKEILWKRVNDSDDLI--MTESEVGKIALHIEKEMFNLFQVTDNRYKSKYRS 736
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFS 301
++FN+ DP N+ +VL + K+V M +E+ S ++ W E K + ++ S
Sbjct: 737 IMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSTWRERPTKPVMESRNKLHS 796
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 124 (48.7 bits), Expect = 0.00054, P = 0.00054
Identities = 26/109 (23%), Positives = 59/109 (54%)
Query: 182 VREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRC 241
+R+ + +L ++ + +D+ ++I + + ++A+ +E ++ + + YK KYR
Sbjct: 667 IRQNIRRSLKEILWKRVNDSDDLI--MTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRS 724
Query: 242 LLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
++FN+ DP N+ +VL + K+V M +E+ S ++ +W E K
Sbjct: 725 IMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSMWTEKPTK 773
>UNIPROTKB|F1LWI4 [details] [associations]
symbol:F1LWI4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 IPI:IPI00781224
Ensembl:ENSRNOT00000056304 Uniprot:F1LWI4
Length = 190
Score = 108 (43.1 bits), Expect = 0.00063, P = 0.00063
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 199 HDNKEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTN--REFR 255
H +E+ + D ++ +A +E+A++ + YK KYR LLFN+ DP N ++
Sbjct: 1 HSTQELPNLELREDEVEGIAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNPPQDLF 60
Query: 256 KKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKER 292
KV V P+ +V M++ ++A ++ W + EK R
Sbjct: 61 LKVAHCDVTPKDLVQMSSIQLAPKELSRWRDQ-EKRR 96
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 37/157 (23%), Positives = 68/157 (43%)
Query: 178 IREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKF 237
+R+ V + LY L+K SE H + I+ +A I E N + YK
Sbjct: 148 LRDQVLKALYDVLAKESE---HPPQSILHTAKA-------IESEMNKVNNCDTNEAAYKA 197
Query: 238 KYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNG 297
+YR + N+ N + + K+ G + PE + AK++A ++ E + K+ N
Sbjct: 198 RYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNL-YNA 256
Query: 298 RIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRHIA 334
+ G + + CG+C+ ++S+ L+ A
Sbjct: 257 Q---GATIERSVTDRFT-CGKCKEKKVSYYQLQTRSA 289
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 331 0.00090 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 617 (66 KB)
Total size of DFA: 253 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.25u 0.17s 25.42t Elapsed: 00:00:01
Total cpu time: 25.26u 0.17s 25.43t Elapsed: 00:00:01
Start: Thu May 9 22:26:25 2013 End: Thu May 9 22:26:26 2013