BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037763
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 129/319 (40%), Gaps = 47/319 (14%)
Query: 29 AQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPC-EKIQLFAIELIWTISLKQIYHL 87
A LD L +LKN +T +LL ST++ + + K E++ A LI K L
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI-----KSWKKL 76
Query: 88 LECFRSAGICFPGYNGHEFPVKNEQVIPANHNNGKLDQKKQTKEGRKITSALSADFSKAK 147
L+ P K E I + + + E R+ +++ S + S K
Sbjct: 77 LD--------GPSTEKDLDEKKKEPAITSQN----------SPEAREESTS-SGNVSNRK 117
Query: 148 VVKNVKVEEVINEYQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQ 207
N + + Y + P A ++ +D +R RE L AL G D I
Sbjct: 118 DETNAR-----DTYVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYIAI--- 161
Query: 208 VRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEK 267
D ++ +E AIY+ + YK + R + N+ D N RK VL G + P+
Sbjct: 162 --GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDL 219
Query: 268 IVNMTAKEMASDKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFI 327
MTA+EMASD+++ +NL KE + +G G CK C +T++
Sbjct: 220 FARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTR 279
Query: 328 S----LRRHIACLNCNQYW 342
S + + C C W
Sbjct: 280 SADEPMTTFVVCNECGNRW 298
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 17/188 (9%)
Query: 159 NEYQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAI 218
+ Y + P A ++ +D +R RE L AL G D I D ++
Sbjct: 124 DTYVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYVAI-----GADEEELGS 170
Query: 219 SVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMAS 278
+E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMAS
Sbjct: 171 QIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMAS 230
Query: 279 DKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIA 334
D+++ +NL KE + +G G CK C +T++ S + +
Sbjct: 231 DELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 290
Query: 335 CLNCNQYW 342
C C W
Sbjct: 291 CNECGNRW 298
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 17/188 (9%)
Query: 159 NEYQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAI 218
+ Y + P A ++ +D +R RE L AL G D I D ++
Sbjct: 124 DTYVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYVAI-----GADEEELGS 170
Query: 219 SVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMAS 278
+E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMAS
Sbjct: 171 QIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMAS 230
Query: 279 DKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIA 334
D+++ +NL KE + +G G CK C +T++ S + +
Sbjct: 231 DELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 290
Query: 335 CLNCNQYW 342
C C W
Sbjct: 291 CNECGNRW 298
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 17/188 (9%)
Query: 159 NEYQGNVPNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAI 218
+ Y + P A ++ +D +R RE L AL G D I D ++
Sbjct: 124 DTYVSSFPRAPST---SDSVRLKCREMLAAAL-----RTGDDYIAI-----GADEEELGS 170
Query: 219 SVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMAS 278
+E AIY+ + YK + R + N+ D N RK VL G + P+ MTA+EMAS
Sbjct: 171 QIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMAS 230
Query: 279 DKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFIS----LRRHIA 334
D+++ +NL KE + +G G CK C +T++ S + +
Sbjct: 231 DELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 290
Query: 335 CLNCNQYW 342
C C W
Sbjct: 291 CNECGNRW 298
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 166 PNASNSLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIY 225
P AS S D IR+ VR L L K ++ N ++ ++ A +VA +E ++
Sbjct: 915 PAASASKPSADQIRQSVRHSLKDILMKRLTDS---NLKVPEEKAA----KVATKIEKELF 967
Query: 226 ENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWY 285
+ + YK KYR L+FN+ DP N KKVL G V P+ ++ M+ +E+AS ++ W
Sbjct: 968 SFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWR 1027
Query: 286 --------ENLEKERAGTNGRIFSGIV 304
E +EKE+ R + I
Sbjct: 1028 RRENRHTIEMIEKEQREVERRPITKIT 1054
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ I D +++ +E I+ + G + Y
Sbjct: 136 DAVRNKCREMLTAAL-----QTDHDHVAI-----GADCERLSAQIEECIFRDVGNTDMKY 185
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N + R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 186 KNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 245
Query: 296 NGRIFSGIVSPKKIISGICKCGRCR---------HTRMSFISLRRHIACLNCNQYW 342
+ +G + + CG+CR TR S + + C C W
Sbjct: 246 HQMARTGGTQ-----TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ I D +A +E I+ + G + Y
Sbjct: 137 DAVRTKCREMLTAAL-----QTDHDHVAI-----GADCECLAGQIEECIFRDVGNTDMKY 186
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R L N+ D N R+KVL G + P++I MT++EMASD+++ + + KE
Sbjct: 187 KNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 246
Query: 296 NGRIFSGIVSPKKIISGICKCGRCR---------HTRMSFISLRRHIACLNCNQYW 342
+ +G + + CG+CR TR S + + C C W
Sbjct: 247 HQMARTGGTQ-----TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 297
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 212 DPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNM 271
DP ++A+ +E +Y + +Y R +FN+ D N R+ VL G V+ EK M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 272 TAKEMASDKMQLWYENLEKERAGTNGRIFSGIVSPKK-IISGICKCGRC---------RH 321
T++EMAS +++ + KE I +S ++ S + KCG+C
Sbjct: 231 TSEEMASAEIREMRDKFTKE------AILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQ 284
Query: 322 TRMSFISLRRHIACLNCNQYW 342
TR S + + CL C W
Sbjct: 285 TRSSDEPMTTFVFCLECGNRW 305
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 58.9 bits (141), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 202 KEIIDQVRACDPIQ-VAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLL 260
+E+ D V + + ++ +A +E+A+++ + G YK KYR LLFN+ DP N + KV+
Sbjct: 625 RELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVH 684
Query: 261 GRVKPEKIVNMTAKEMASDKMQLWYENLEK 290
G V P +V M++ ++A ++ W + EK
Sbjct: 685 GDVTPYDLVRMSSMQLAPQELARWRDQEEK 714
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 29/178 (16%)
Query: 176 DCIREIVREKLYGAL--SKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTG 233
D +R RE L AL +V E G +P ++A +E AIY + +
Sbjct: 151 DAVRIKCREMLATALKIGEVPEGCG-------------EPEEMAAELEDAIYSEFNNTDM 197
Query: 234 TYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERA 293
YK + R + N+ DP N R + G V +++ MT +EMASD+M+ E KE
Sbjct: 198 KYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKE-- 255
Query: 294 GTNGRIFSGIVSPKKIISGICKCGRCR---------HTRMSFISLRRHIACLNCNQYW 342
N + + K + + KC +C+ TR + + + C C W
Sbjct: 256 AINDAQLATVQGTK---TDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 130/333 (39%), Gaps = 37/333 (11%)
Query: 32 LDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAIELIWTISLKQIYHLLECF 91
LD L +L +C ++ QLL +T++ + + KH C ++ ++ + +K LL+
Sbjct: 27 LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKH-CSDKEVVSLAKVL---IKNWKRLLDSP 82
Query: 92 RSA--------------GICFPGYN---GHEFPVKNEQVIPANHNNGKLDQKKQTKEGRK 134
R+ G+ + G P K P + +D + T K
Sbjct: 83 RTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPRKKGGGEPKTRRDS-VDSRSSTTSSPK 141
Query: 135 ITSALSADFSKAKV-VKNVKVEEVINEYQGNVPNASNSLKCNDCIREIVREKLYGALSKV 193
S ++ SK+KV + V + D +R+ E L AL
Sbjct: 142 RPSLERSNSSKSKVETPTTPSSPSTPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAALK-- 199
Query: 194 SEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNRE 253
DN D CD ++A +E IY+ + Y+ + R + N+ DP N
Sbjct: 200 ----AEDN--FKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPG 251
Query: 254 FRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGI 313
R+ VL G + PE I MTA+EMASD+++ + +E + +G + +
Sbjct: 252 LRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSK 311
Query: 314 CKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
CK C + TR + + + C C W
Sbjct: 312 CKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 344
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 14/171 (8%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ + +C+ ++ +E I+ + G + Y
Sbjct: 136 DAVRNKCREMLTLAL-----QTDHDHVAV---GVSCE--HLSSQIEECIFLDVGNTDMKY 185
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 186 KNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 245
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
+ +G C+ C + TR S + ++ C C W
Sbjct: 246 HQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R RE L AL + HD+ + + ++ +E I+ + G + Y
Sbjct: 136 DAVRNKCREMLTLAL-----QTDHDHVAV-----GVNCEHLSSQIEECIFLDVGNTDMKY 185
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
K + R + N+ D N R+ VL G + P++I MT++EMASD+++ + + KE
Sbjct: 186 KNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIRE 245
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
+ +G C+ C + TR S + ++ C C W
Sbjct: 246 HQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 229 GRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENL 288
G++ Y+ + R L N+ D N + R VL + P+++ MT+ E+AS+ + L
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKL 232
Query: 289 EKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRHIA---------CLNCN 339
E+E + P+K ++ + CG+C+ ++S+ ++ A C C
Sbjct: 233 EQENL-----FHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCG 287
Query: 340 QYW 342
W
Sbjct: 288 NRW 290
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 216 VAISVESAIYENWGRST----GTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNM 271
+A+++E +Y+ +G Y+ K+R L FN+ D N R +V+ G+V P+ +V M
Sbjct: 237 LALTIEQELYDAYGTVEPEIGSNYRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLVAM 296
Query: 272 TAKEMASDKMQLWYENLEKE 291
+++EM + ++Q E + E
Sbjct: 297 SSEEMMNPELQKLAEEVRAE 316
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R+ E L AL +A D K D CD ++A +E IY+ + Y
Sbjct: 185 DSVRDKCVEMLSAAL-----KADDDYK---DYGVNCD--KMASEIEDHIYQELKSTDMKY 234
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
+ + R + N+ DP N R+ VL G + I MTA+EMASD+++ + +E
Sbjct: 235 RNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIRE 294
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
+ +G + CK C + TR + + + C C W
Sbjct: 295 HQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 215 QVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAK 274
++A+ +E ++ + + YK KYR ++FN+ DP N+ +VL + K+V M +
Sbjct: 698 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPE 757
Query: 275 EMASDKMQLWYENLEK 290
E+ S ++ +W E K
Sbjct: 758 ELVSKELSMWTEKPTK 773
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTY 235
D +R+ E L AL +A D K D CD ++A +E IY+ + Y
Sbjct: 186 DSVRDKCVEMLSAAL-----KADDDYK---DYGVNCD--KMASEIEDHIYQELKSTDMKY 235
Query: 236 KFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGT 295
+ + R + N+ DP N R+ VL G + I MTA+EMASD+++ + +E
Sbjct: 236 RNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIRE 295
Query: 296 NGRIFSGIVSPKKIISGICKCGRCRH----TRMSFISLRRHIACLNCNQYW 342
+ +G + CK C + TR + + + C C W
Sbjct: 296 HQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 346
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 215 QVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAK 274
++A+ +E ++ + + YK KYR ++FN+ DP N+ +VL + K+V + +
Sbjct: 701 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPE 760
Query: 275 EMASDKMQLWYE 286
E+ S ++ W E
Sbjct: 761 ELVSKELSTWKE 772
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 24/174 (13%)
Query: 178 IREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKF 237
+R+ V + LY L+K SE H + I+ +A I E N + YK
Sbjct: 148 LRDQVLKALYDVLAKESE---HPPQSILHTAKA-------IESEMNKVNNCDTNEAAYKA 197
Query: 238 KYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNG 297
+YR + N+ N + + K+ G + PE + AK++A ++ E + K+ N
Sbjct: 198 RYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQ----NL 253
Query: 298 RIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRHIA---------CLNCNQYW 342
G + + CG+C+ ++S+ L+ A C C W
Sbjct: 254 YNAQGATIERSVTDRFT-CGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 235 YKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAG 294
Y+ K+R L FN+ D N FR +VL + +VN++++EMA+ ++ E + ++++
Sbjct: 278 YREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEEI-RQQST 336
Query: 295 TNGRIFSGIVSPK 307
N I +++P+
Sbjct: 337 ENTVIKQHLIAPR 349
>sp|P36106|BYE1_YEAST Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BYE1 PE=1 SV=1
Length = 594
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 228 WGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYEN 287
+G Y K R L N+ D N E + V+ G++ K+VNM A E+A+ +Q + E
Sbjct: 295 FGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDLQEFKEK 354
Query: 288 LEK 290
+K
Sbjct: 355 RDK 357
>sp|A6ZZW1|BYE1_YEAS7 Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=BYE1 PE=3 SV=1
Length = 594
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 228 WGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYEN 287
+G Y K R L N+ D N E + V+ G++ K+VNM A E+A+ +Q + E
Sbjct: 295 FGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDLQEFKEK 354
Query: 288 LEK 290
+K
Sbjct: 355 RDK 357
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 184 EKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLL 243
E LY AL+ S DQ +A A +E ++ + ++ YK R +
Sbjct: 178 ELLYAALTSSS----------ADQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKV 227
Query: 244 FNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQ 282
N+ +P N ++ +L G + P + MT EMA+ +++
Sbjct: 228 ANLKNPKNSHLQQNLLSGTMSPREFAEMTVMEMANKELK 266
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 184 EKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLL 243
E LY AL+ S DQ +A A +E ++ + ++ YK R +
Sbjct: 179 ELLYAALTSSS----------TDQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKV 228
Query: 244 FNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQ 282
N+ +P N ++ +L G P + MT EMA+ +++
Sbjct: 229 ANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELK 267
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 28 EAQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAIELI 76
E ++ L L++ IT+Q L T + RH+ + KHP ++ A +L+
Sbjct: 141 EESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLV 189
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 213 PIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMT 272
P +A+ +E+ +Y+ + + YK K R FN+ N R +L ++ K +M
Sbjct: 183 PEDIAVEIEAEMYDIYRGVSKEYKEKLRSFKFNLK--KNDILRLSLLNRQISVAKFCSMD 240
Query: 273 AKEMASDKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRRH 332
MASD ++ + L+K S + + + +CG+C+ + ++ L+
Sbjct: 241 IYSMASDDLKEERKKLDKFNTEA-----SMLGQNNEATTDQFQCGKCKQRKCTYTQLQTR 295
Query: 333 IA 334
A
Sbjct: 296 SA 297
>sp|O05947|SYT_RICPR Threonine--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=thrS PE=3 SV=1
Length = 635
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 120 NGKLDQKKQTKEGRKITSALSADFSKAKVVKNVKVEEVINEYQGNVPNASNSLKCNDCIR 179
+G + Q Q +I +A+S +KA +V E G + + S ++ NDC
Sbjct: 8 DGSVKQFAQNITAFEIVNAISMSLAKAAIVV---------EINGELKDLSTVIE-NDCKL 57
Query: 180 EIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKY 239
I+ + Y L + +A H E + ++ + + ++E+ Y ++ R
Sbjct: 58 RILTAQDYECLEIIRHDAAHLTAEAVKELFPETQVTIGPAIENGYYYDFARDKP------ 111
Query: 240 RCLLFNINDPTNREFRKKVL 259
F+I+D N E + + L
Sbjct: 112 ----FSIDDLANIEAKMQEL 127
>sp|Q0BQ24|CH60_GRABC 60 kDa chaperonin OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=groL PE=3 SV=1
Length = 544
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 38/125 (30%)
Query: 163 GNVPNASNSLKCNDCIR---------EIVREKLYGALSKVSEEAGHDNKEIIDQVRACDP 213
G V A SLK D EI+R L L ++SE AG D I +V
Sbjct: 415 GGVALARASLKLADLGYDNGDQKVGIEIIRRALQSPLRQISENAGEDGAVIAGKV----- 469
Query: 214 IQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTA 273
EN GTY F + D EF+ V G + P K+V
Sbjct: 470 -----------LEN-----GTYNFGF--------DAQTGEFKDLVSAGIIDPAKVVRTAL 505
Query: 274 KEMAS 278
++ AS
Sbjct: 506 QDAAS 510
>sp|Q8RBQ1|RGMG_THETN Putative ribose/galactose/methyl galactoside import ATP-binding
protein OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=TTE0763 PE=3
SV=1
Length = 501
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 120 NGKLDQKKQTKEGRKITSALSADFSKAKVVKNVKV 154
NG +D+KKQ +E +KI L+ + A+ VKN+ V
Sbjct: 110 NGVIDEKKQNEEAKKILEKLNVNIDPAEYVKNLSV 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,379,623
Number of Sequences: 539616
Number of extensions: 5035857
Number of successful extensions: 13880
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13843
Number of HSP's gapped (non-prelim): 44
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)