Query 037763
Match_columns 354
No_of_seqs 224 out of 719
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqv_S STP-alpha, transcriptio 100.0 2.3E-58 7.8E-63 446.3 24.0 290 2-345 3-309 (309)
2 3po3_S Transcription elongatio 100.0 1.5E-45 5.3E-50 330.6 10.2 157 171-345 10-178 (178)
3 2lw4_A Transcription elongatio 100.0 7.7E-33 2.6E-37 231.0 1.4 107 172-288 6-112 (113)
4 3ndq_A Transcription elongatio 100.0 1.9E-30 6.4E-35 215.0 8.4 100 171-280 9-108 (108)
5 2dme_A PHD finger protein 3; P 100.0 1.6E-30 5.4E-35 219.2 1.2 110 173-289 7-116 (120)
6 1wjt_A Transcription elongatio 99.7 1E-17 3.5E-22 137.3 3.4 74 1-85 10-86 (103)
7 1tfi_A Transcriptional elongat 99.3 4.7E-13 1.6E-17 95.7 3.2 39 307-345 3-50 (50)
8 1qyp_A RNA polymerase II; tran 98.7 5E-09 1.7E-13 76.5 3.4 35 310-344 12-55 (57)
9 3h0g_I DNA-directed RNA polyme 98.6 2E-08 7E-13 83.3 3.8 32 312-343 71-111 (113)
10 1twf_I B12.6, DNA-directed RNA 98.5 4.6E-08 1.6E-12 82.2 2.9 34 313-346 72-114 (122)
11 3qt1_I DNA-directed RNA polyme 98.4 3.8E-08 1.3E-12 83.9 0.0 32 312-343 91-131 (133)
12 2xpp_A IWS1, ECU08_0440; trans 97.3 9.1E-05 3.1E-09 63.8 2.7 58 22-79 75-136 (145)
13 3nfq_A Transcription factor IW 97.1 0.00021 7.1E-09 63.1 2.7 58 22-79 90-151 (170)
14 2b4j_C PC4 and SFRS1 interacti 96.3 0.0038 1.3E-07 50.2 4.4 73 1-79 4-81 (98)
15 1z9e_A PC4 and SFRS1 interacti 95.6 0.0059 2E-07 51.2 2.8 73 1-79 4-81 (127)
16 1qxf_A GR2, 30S ribosomal prot 92.2 0.048 1.6E-06 40.5 1.4 28 314-341 8-35 (66)
17 1k81_A EIF-2-beta, probable tr 91.0 0.11 3.6E-06 34.1 2.0 30 315-344 2-33 (36)
18 2xzm_6 RPS27E; ribosome, trans 90.9 0.068 2.3E-06 41.3 1.1 32 310-341 26-60 (81)
19 3j20_W 30S ribosomal protein S 90.7 0.084 2.9E-06 38.9 1.4 29 313-341 15-43 (63)
20 3iz6_X 40S ribosomal protein S 90.3 0.073 2.5E-06 41.5 0.8 28 314-341 37-64 (86)
21 3u5c_b RP61, YS20, 40S ribosom 89.3 0.13 4.4E-06 39.8 1.5 29 313-341 34-62 (82)
22 2akl_A PHNA-like protein PA012 88.4 0.17 5.8E-06 42.5 1.7 32 310-343 24-55 (138)
23 2e2z_A TIM15; protein import, 86.9 0.23 7.8E-06 39.9 1.6 33 309-341 9-47 (100)
24 1pft_A TFIIB, PFTFIIBN; N-term 82.9 0.54 1.9E-05 32.4 1.8 31 312-342 4-34 (50)
25 4ayb_P DNA-directed RNA polyme 79.5 0.51 1.8E-05 32.7 0.7 28 313-341 3-32 (48)
26 3h0g_L DNA-directed RNA polyme 77.6 0.81 2.8E-05 33.7 1.3 30 311-342 19-48 (63)
27 2kwq_A Protein MCM10 homolog; 77.5 0.76 2.6E-05 36.3 1.2 33 309-343 44-77 (92)
28 2jr6_A UPF0434 protein NMA0874 77.3 0.95 3.2E-05 33.7 1.6 40 311-352 6-45 (68)
29 2hf1_A Tetraacyldisaccharide-1 76.5 0.93 3.2E-05 33.8 1.4 40 311-352 6-45 (68)
30 2js4_A UPF0434 protein BB2007; 76.4 1 3.4E-05 33.8 1.6 40 311-352 6-45 (70)
31 2pk7_A Uncharacterized protein 73.6 1.2 4.2E-05 33.2 1.4 40 311-352 6-45 (69)
32 3dwd_A ADP-ribosylation factor 72.5 1.8 6.1E-05 37.0 2.4 57 272-347 16-73 (147)
33 1vq8_Z 50S ribosomal protein L 72.1 5.3 0.00018 30.8 4.8 32 310-342 24-55 (83)
34 1wii_A Hypothetical UPF0222 pr 72.1 3 0.0001 32.4 3.4 39 309-347 19-62 (85)
35 1twf_L ABC10-alpha, DNA-direct 71.5 1.4 4.9E-05 33.0 1.3 31 309-341 24-54 (70)
36 2jny_A Uncharacterized BCR; st 71.3 1.7 5.7E-05 32.3 1.7 41 310-352 7-47 (67)
37 1dl6_A Transcription factor II 70.5 1.5 5.3E-05 31.4 1.3 27 314-340 12-38 (58)
38 2fiy_A Protein FDHE homolog; F 65.7 3.4 0.00012 39.4 3.0 34 312-346 181-222 (309)
39 2d74_B Translation initiation 65.5 1.9 6.6E-05 36.9 1.1 30 315-344 106-137 (148)
40 1nee_A EIF-2-beta, probable tr 63.3 3.1 0.00011 35.1 2.0 27 315-341 104-132 (138)
41 2e9h_A EIF-5, eukaryotic trans 61.6 3.4 0.00012 35.7 1.9 30 315-344 105-138 (157)
42 2owa_A Arfgap-like finger doma 60.8 5.4 0.00019 33.6 3.0 59 270-347 11-71 (138)
43 2g2k_A EIF-5, eukaryotic trans 54.0 6.9 0.00023 34.2 2.6 30 315-344 98-131 (170)
44 3cw2_K Translation initiation 52.8 3 0.0001 35.2 0.1 30 312-341 102-133 (139)
45 1gnf_A Transcription factor GA 51.1 1.7 5.7E-05 29.9 -1.4 33 313-345 4-38 (46)
46 3axs_A Probable N(2),N(2)-dime 50.7 4.1 0.00014 39.9 0.7 37 311-347 242-278 (392)
47 2vut_I AREA, nitrogen regulato 50.7 2.1 7.1E-05 29.0 -1.0 30 315-344 3-34 (43)
48 3eqt_A ATP-dependent RNA helic 49.2 8 0.00027 32.9 2.2 14 332-345 69-82 (145)
49 2hgo_A CASSIICOLIN; toxin, dis 49.1 5.1 0.00018 23.8 0.7 11 336-346 16-26 (27)
50 2i5o_A DNA polymerase ETA; zin 48.8 6.2 0.00021 26.1 1.1 14 309-322 5-18 (39)
51 2qfd_A Probable ATP-dependent 46.6 8.4 0.00029 32.8 1.9 38 308-345 22-96 (145)
52 1ltl_A DNA replication initiat 46.2 10 0.00034 35.2 2.6 34 308-344 129-169 (279)
53 4gat_A Nitrogen regulatory pro 45.2 3.9 0.00014 30.2 -0.3 34 311-346 7-44 (66)
54 2ct7_A Ring finger protein 31; 44.5 11 0.00036 28.7 2.1 11 332-342 51-61 (86)
55 4gzn_C ZFP-57, zinc finger pro 43.7 4.2 0.00014 28.7 -0.3 32 313-344 4-44 (60)
56 3o47_A ADP-ribosylation factor 42.9 9.5 0.00032 35.8 1.9 25 315-339 39-64 (329)
57 3j21_i 50S ribosomal protein L 42.0 34 0.0012 26.3 4.6 29 312-342 34-63 (83)
58 1kdx_A CBP; complex (transcrip 40.9 49 0.0017 25.3 5.3 66 175-247 11-76 (81)
59 3ga8_A HTH-type transcriptiona 40.1 22 0.00074 26.4 3.2 13 332-344 36-48 (78)
60 1bbo_A Human enhancer-binding 39.6 5 0.00017 26.5 -0.5 30 314-343 2-40 (57)
61 2kpi_A Uncharacterized protein 39.3 15 0.0005 26.0 2.0 39 310-352 7-47 (56)
62 2lce_A B-cell lymphoma 6 prote 38.8 6.5 0.00022 27.7 0.0 35 309-343 13-56 (74)
63 2gmg_A Hypothetical protein PF 37.5 50 0.0017 26.4 5.1 71 260-343 22-95 (105)
64 2qkd_A Zinc finger protein ZPR 37.0 18 0.00061 35.7 2.9 30 312-342 219-259 (404)
65 2adr_A ADR1; transcription reg 36.9 5.6 0.00019 26.6 -0.6 30 314-343 3-41 (60)
66 2jsp_A Transcriptional regulat 36.8 11 0.00036 29.4 1.0 13 332-344 21-33 (87)
67 1x5w_A Zinc finger protein 64, 36.6 6.3 0.00021 27.4 -0.4 34 310-343 6-48 (70)
68 1x6e_A Zinc finger protein 24; 36.6 6.4 0.00022 27.6 -0.3 34 310-343 11-53 (72)
69 3uk3_C Zinc finger protein 217 36.1 6.3 0.00021 26.0 -0.4 31 313-343 4-43 (57)
70 4a2v_A RIG-I, retinoic acid in 36.0 15 0.00052 30.6 1.9 14 332-345 61-76 (131)
71 2jvx_A NF-kappa-B essential mo 35.9 3.2 0.00011 25.6 -1.7 24 313-336 3-27 (28)
72 1ffk_W Ribosomal protein L37AE 35.5 48 0.0016 24.8 4.4 31 310-342 24-55 (73)
73 3lrr_A Probable ATP-dependent 34.9 16 0.00056 30.0 1.9 14 332-345 59-74 (121)
74 2zjr_Z 50S ribosomal protein L 34.5 16 0.00055 26.3 1.6 25 309-339 26-50 (60)
75 2p57_A GTPase-activating prote 34.0 23 0.00079 30.0 2.7 32 315-346 39-71 (144)
76 2kwq_A Protein MCM10 homolog; 33.8 17 0.00057 28.6 1.6 35 307-344 9-59 (92)
77 3iz5_m 60S ribosomal protein L 33.0 51 0.0017 25.8 4.3 29 312-342 35-64 (92)
78 3j21_g 50S ribosomal protein L 32.8 18 0.00063 25.3 1.5 25 311-341 12-37 (51)
79 2iqj_A Stromal membrane-associ 32.5 11 0.00038 31.5 0.5 31 312-342 26-57 (134)
80 3cc2_Z 50S ribosomal protein L 32.5 67 0.0023 26.2 5.1 31 310-342 57-88 (116)
81 3v2d_5 50S ribosomal protein L 31.8 18 0.0006 26.1 1.4 24 310-339 27-50 (60)
82 3ga3_A Interferon-induced heli 31.6 19 0.00065 30.1 1.7 18 309-326 8-25 (133)
83 4a17_Y RPL37A, 60S ribosomal p 30.3 71 0.0024 25.5 4.8 30 311-342 34-64 (103)
84 4bbr_M Transcription initiatio 30.1 18 0.00063 34.6 1.6 26 314-339 22-49 (345)
85 2k3r_A Ribonuclease P protein 29.9 27 0.00093 28.5 2.4 32 315-346 62-103 (123)
86 3k7a_M Transcription initiatio 29.3 14 0.00047 35.3 0.5 28 313-340 21-50 (345)
87 1x0t_A Ribonuclease P protein 29.1 32 0.0011 27.9 2.7 32 315-346 67-108 (120)
88 3dfx_A Trans-acting T-cell-spe 29.0 5.2 0.00018 29.3 -1.9 32 314-345 8-41 (63)
89 4gl2_A Interferon-induced heli 28.0 19 0.00067 36.6 1.5 13 332-345 641-653 (699)
90 2lcq_A Putative toxin VAPC6; P 27.3 21 0.00073 30.1 1.4 31 307-341 126-157 (165)
91 3izc_m 60S ribosomal protein R 26.2 68 0.0023 25.1 3.9 29 312-342 35-64 (92)
92 3na7_A HP0958; flagellar bioge 26.1 20 0.00069 32.6 1.0 26 315-340 200-230 (256)
93 2gqj_A Zinc finger protein KIA 25.5 9.6 0.00033 28.7 -1.1 33 311-343 22-65 (98)
94 1rmk_A MU-O-conotoxin mrvib; b 25.3 18 0.00062 22.4 0.4 12 338-349 2-13 (31)
95 1vd4_A Transcription initiatio 25.2 17 0.00057 24.9 0.2 34 311-344 12-51 (62)
96 2epr_A POZ-, at HOOK-, and zin 25.1 10 0.00035 24.3 -0.9 31 310-340 9-48 (48)
97 2crw_A ARF GAP 3, ADP-ribosyla 25.1 32 0.0011 29.2 2.0 28 314-341 30-58 (149)
98 2cot_A Zinc finger protein 435 25.0 12 0.0004 26.5 -0.6 34 310-343 15-57 (77)
99 2gut_A ARC/mediator, positive 24.8 1E+02 0.0035 23.3 4.5 55 176-247 12-66 (77)
100 2epq_A POZ-, at HOOK-, and zin 24.6 9.5 0.00033 23.9 -1.1 28 312-339 9-45 (45)
101 2kmk_A Zinc finger protein GFI 23.9 14 0.00049 25.9 -0.3 32 312-343 28-68 (82)
102 2eps_A POZ-, at HOOK-, and zin 23.8 13 0.00044 24.6 -0.6 33 310-342 9-51 (54)
103 2i9c_A Hypothetical protein RP 23.7 2.3E+02 0.0078 23.2 6.9 65 3-76 12-81 (123)
104 2yt9_A Zinc finger-containing 23.7 18 0.00061 26.3 0.2 10 313-322 35-44 (95)
105 3k1f_M Transcription initiatio 23.4 31 0.0011 30.4 1.7 30 312-341 20-51 (197)
106 2fiy_A Protein FDHE homolog; F 23.1 30 0.001 32.8 1.6 36 312-347 221-268 (309)
107 1dxg_A Desulforedoxin; non-hem 23.0 28 0.00096 22.2 1.0 10 332-341 6-15 (36)
108 2drp_A Protein (tramtrack DNA- 22.8 15 0.00053 24.8 -0.3 32 312-343 9-51 (66)
109 2d9h_A Zinc finger protein 692 22.6 15 0.00053 25.8 -0.4 32 312-343 6-49 (78)
110 2dmi_A Teashirt homolog 3; zin 22.4 19 0.00064 27.4 0.1 33 312-344 18-62 (115)
111 3sub_A ADP-ribosylation factor 22.2 23 0.00078 30.7 0.6 25 315-339 24-49 (163)
112 4dra_E Centromere protein X; D 22.0 1.6E+02 0.0053 22.5 5.2 35 4-38 43-80 (84)
113 3b0b_C CENP-X, centromere prot 21.5 1.5E+02 0.0051 22.4 5.0 35 4-38 39-76 (81)
114 2ct1_A Transcriptional repress 20.8 18 0.00062 25.4 -0.3 32 312-343 14-56 (77)
115 1llm_C Chimera of ZIF23-GCN4; 20.7 19 0.00064 26.1 -0.3 9 314-322 4-12 (88)
116 2csh_A Zinc finger protein 297 20.4 21 0.00072 26.8 -0.1 31 313-343 37-76 (110)
117 2ctd_A Zinc finger protein 512 20.1 20 0.00067 27.2 -0.3 32 312-343 33-73 (96)
118 3a43_A HYPD, hydrogenase nicke 20.1 32 0.0011 28.6 1.0 10 311-320 68-77 (139)
119 2jox_A Churchill protein; zinc 20.0 80 0.0027 25.1 3.2 17 314-330 27-43 (106)
No 1
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=2.3e-58 Score=446.32 Aligned_cols=290 Identities=18% Similarity=0.271 Sum_probs=208.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCccHHHHHHHHHHh-hcCCCcHHhhhcccceeeccccccCCCHHHHHHHhhhh--cc
Q 037763 2 KEKMMELYEAAKRAAMAAVWKEGGAEEAQCLDALDQL-KNCSITYQLLVSTQVARHLVPMLKHPCEKIQLFAIELI--WT 78 (354)
Q Consensus 2 ~~~~~~l~~~~~~~a~~~~~~~~~~~~~~~l~~L~~L-~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~Ak~Li--WK 78 (354)
|+||+++++.+.+. ..+++.|+++|++| +.++||+++|++|+||++||+||||++++|+.+|+.|| ||
T Consensus 3 ~~el~~~~~~L~k~---------~~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK 73 (309)
T 1pqv_S 3 SKEVLVHVKNLEKN---------KSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73 (309)
T ss_pred HHHHHHHHHHHhcc---------CCCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67899999888661 24688999999999 99999999999999999999999999999999999999 99
Q ss_pred cchhhhhhhhcccccCCCCCCCCCCCCCCCCccccCccCCCCCCcccccccccccccccccccccccccccccccchhhc
Q 037763 79 ISLKQIYHLLECFRSAGICFPGYNGHEFPVKNEQVIPANHNNGKLDQKKQTKEGRKITSALSADFSKAKVVKNVKVEEVI 158 (354)
Q Consensus 79 ~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~e~~~ 158 (354)
+ +|. .+..+..+....++ .. ++...+.+++.. .. .+...+.+.. .+..+++...++
T Consensus 74 ~----~v~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~~-~~~~~~~~~~---~~~~~~~~~~~~----------- 129 (309)
T 1pqv_S 74 D----AIN-KNKRSRQAQQHHQD-HA-PGNAEDKTTVGE--SV-NGVQQPASSQ---SDAMKQDKYVST----------- 129 (309)
T ss_pred H----HHH-HhccCCcccccccc-cc-cccccCCCCCCC--Cc-CCCCCCcccc---cccccCCCCCCC-----------
Confidence 9 872 22121111000000 00 000000000000 00 0000000000 000000000000
Q ss_pred ccccCCCCCCCC--CCCCChHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhccCChHHHHHhhHHHHHHHhCCCchh--
Q 037763 159 NEYQGNVPNASN--SLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGT-- 234 (354)
Q Consensus 159 ~~~~~~~~~~~~--~~~t~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~lA~~IE~aif~~~~~~~~~-- 234 (354)
...++..+. ...++|++|++||+||++||..+..+.+ .++..+|.+||.+||+.|++++..
T Consensus 130 ---~~~~~~~~~~~~~~~~d~~R~k~r~~L~~aL~~~~~~~~------------~~~~~~A~~IE~al~~~~~~~~~~~~ 194 (309)
T 1pqv_S 130 ---KPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPP------------QSILHTAKAIESEMNKVNNCDTNEAA 194 (309)
T ss_pred ---CCCCCCCCCCCcCcCChHHHHHHHHHHHHHHhcCCCccc------------hhHHHHHHHHHHHHHHHhCCCchhHH
Confidence 001111112 2368899999999999999986432111 145789999999999999887777
Q ss_pred hhhhHhhHHhhcCCCCCHHHHHHHhcCCCCchhcccCChhhcCCHHHHHHHHHHHHHhcCCcCcccccccC-CCcccccc
Q 037763 235 YKFKYRCLLFNINDPTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFSGIVS-PKKIISGI 313 (354)
Q Consensus 235 Yk~k~Rsl~~NLKd~kNp~Lr~~vl~G~isp~~lv~Ms~eEmAS~e~k~~re~~~~~~~~~~~~~~~~~~~-~~~~~td~ 313 (354)
|++++|||+|||||++||.||++||.|+|+|++||.|+++||||+|+++++++++++.... ++++ ...+.|+.
T Consensus 195 Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~~~~~e~l~~------~~~~~~~~~~~~~ 268 (309)
T 1pqv_S 195 YKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYN------AQGATIERSVTDR 268 (309)
T ss_pred HHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHHHHHHHHHHH------hhhccccccCccc
Confidence 9999999999999999999999999999999999999999999999999999999875443 4444 25678899
Q ss_pred eEeCCCCCccceEEeeee---------eeeeccCCCccccc
Q 037763 314 CKCGRCRHTRMSFISLRR---------HIACLNCNQYWDST 345 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk~~ 345 (354)
|+|++||+++|+|+|+|| |++|.+|||+|+||
T Consensus 269 ~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~fc 309 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS 309 (309)
T ss_pred ccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceecC
Confidence 999999999999999998 99999999999998
No 2
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=1.5e-45 Score=330.58 Aligned_cols=157 Identities=22% Similarity=0.420 Sum_probs=135.2
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhccCChHHHHHhhHHHHHHHhCC-Cch-hhhhhHhhHHhhcCC
Q 037763 171 SLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGR-STG-TYKFKYRCLLFNIND 248 (354)
Q Consensus 171 ~~~t~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~lA~~IE~aif~~~~~-~~~-~Yk~k~Rsl~~NLKd 248 (354)
.+.++|++|++|++||++||..+..+.+ .++..+|.+||.+||+.|++ ++. +|++++|||+|||||
T Consensus 10 ~~~~~d~vRdk~~~lL~~aL~~~~~~~~------------~~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd 77 (178)
T 3po3_S 10 TAIYHHKLRDQVLKALYDVLAKESEHPP------------QSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVIS 77 (178)
T ss_dssp -----CHHHHHHHHHHHHHTTSSSSCST------------THHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHS
T ss_pred cCcCCChHHHHHHHHHHHHHhcCCCCch------------hhHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCC
Confidence 3579999999999999999997543222 23468999999999999986 455 899999999999999
Q ss_pred CCCHHHHHHHhcCCCCchhcccCChhhcCCHHHHHHHHHHHHHhcCCcCcccccccC-CCcccccceEeCCCCCccceEE
Q 037763 249 PTNREFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLEKERAGTNGRIFSGIVS-PKKIISGICKCGRCRHTRMSFI 327 (354)
Q Consensus 249 ~kNp~Lr~~vl~G~isp~~lv~Ms~eEmAS~e~k~~re~~~~~~~~~~~~~~~~~~~-~~~~~td~f~C~kC~~~k~ty~ 327 (354)
++||+||++|++|+|+|.+||.|+++||||+|+++++++++++.... ++++ ..++.|+.|+|++||+++++|+
T Consensus 78 ~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~~e~l~~------~~~~~~~~~~t~~~~Cp~C~~~~a~~~ 151 (178)
T 3po3_S 78 KNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYN------AQGATIERSVTDRFTCGKCKEKKVSYY 151 (178)
T ss_dssp SSCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHHHHHHHH------TBCCCCCCCCBSSSCCSSSCCSCEECC
T ss_pred CCCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHHHHHHHH------hhhccccCCCcCCcCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999998775433 4444 2567899999999999999999
Q ss_pred eeee---------eeeeccCCCccccc
Q 037763 328 SLRR---------HIACLNCNQYWDST 345 (354)
Q Consensus 328 q~QT---------Fv~C~~CgnrWk~~ 345 (354)
|+|| |++|.+|||+|+||
T Consensus 152 q~Q~rsaDE~mt~f~~C~~C~~~w~f~ 178 (178)
T 3po3_S 152 QLQTRSAAAPLTTFCTCEACGNRWKFS 178 (178)
T ss_dssp CCCCSCTTSCCCCCEEETTTCCEECCC
T ss_pred EeecccCCCCCcEEEEcCCCCCeeccC
Confidence 9998 99999999999998
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.97 E-value=7.7e-33 Score=230.98 Aligned_cols=107 Identities=28% Similarity=0.443 Sum_probs=95.9
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhccCChHHHHHhhHHHHHHHhCCCchhhhhhHhhHHhhcCCCCC
Q 037763 172 LKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTN 251 (354)
Q Consensus 172 ~~t~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~lA~~IE~aif~~~~~~~~~Yk~k~Rsl~~NLKd~kN 251 (354)
+.|+|++|++||++|++||..+..+. ....++..+|.+||.++|..|++++.+|++++|||+|||||++|
T Consensus 6 p~t~D~vRdk~~e~L~~aL~~~~~~~----------~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~N 75 (113)
T 2lw4_A 6 PVTCDAVRNKCREMLTAALQTDHDHV----------AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKN 75 (113)
T ss_dssp CCCCSTTHHHHHHHHHHHHHSSTHHH----------HHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSS
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCcc----------cccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCC
Confidence 57999999999999999998532211 12346789999999999999999899999999999999999999
Q ss_pred HHHHHHHhcCCCCchhcccCChhhcCCHHHHHHHHHH
Q 037763 252 REFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENL 288 (354)
Q Consensus 252 p~Lr~~vl~G~isp~~lv~Ms~eEmAS~e~k~~re~~ 288 (354)
|+||++|++|+|+|++||.||++||||+|+|++|+++
T Consensus 76 p~Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~~~ 112 (113)
T 2lw4_A 76 PDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 112 (113)
T ss_dssp SHHHHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSSSC
T ss_pred HHHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999999999998765
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.96 E-value=1.9e-30 Score=214.99 Aligned_cols=100 Identities=33% Similarity=0.468 Sum_probs=86.1
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhccCChHHHHHhhHHHHHHHhCCCchhhhhhHhhHHhhcCCCC
Q 037763 171 SLKCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPT 250 (354)
Q Consensus 171 ~~~t~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~lA~~IE~aif~~~~~~~~~Yk~k~Rsl~~NLKd~k 250 (354)
.+.|+|++|++||+||++||+.... ..+ ...++..+|.+||.+||+.|++++.+|++++|||+|||||++
T Consensus 9 ~~~t~d~vR~k~~~lL~~aL~~~~d--------~~~--~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~k 78 (108)
T 3ndq_A 9 APSTSDSVRLKCREMLAAALRTGDD--------YIA--IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAK 78 (108)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTGGGH--------HHH--HTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTT
T ss_pred CCCCCChHHHHHHHHHHHHHHcCCC--------CCc--ccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCC
Confidence 4679999999999999999997432 111 134678999999999999999888999999999999999999
Q ss_pred CHHHHHHHhcCCCCchhcccCChhhcCCHH
Q 037763 251 NREFRKKVLLGRVKPEKIVNMTAKEMASDK 280 (354)
Q Consensus 251 Np~Lr~~vl~G~isp~~lv~Ms~eEmAS~e 280 (354)
||+||++|++|+|+|++||.||++||||+|
T Consensus 79 Np~Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 79 NPNLRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp CHHHHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred CHHHHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 999999999999999999999999999987
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=1.6e-30 Score=219.21 Aligned_cols=110 Identities=31% Similarity=0.529 Sum_probs=97.1
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhccCChHHHHHhhHHHHHHHhCCCchhhhhhHhhHHhhcCCCCCH
Q 037763 173 KCNDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNINDPTNR 252 (354)
Q Consensus 173 ~t~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~lA~~IE~aif~~~~~~~~~Yk~k~Rsl~~NLKd~kNp 252 (354)
.++|.+|++||++|+++|...+.+.+.. + ..+++..+|.+||.+||+.|++++.+|++++|||+|||||++||
T Consensus 7 ~~~d~~Rd~~r~~L~eaL~~~~~~~~~~---~----~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp 79 (120)
T 2dme_A 7 GSADQIRQSVRHSLKDILMKRLTDSNLK---V----PEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNN 79 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTTCC---C----CHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCC
T ss_pred CCCchHHHHHHHHHHHHHHHhccccccc---c----chhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCH
Confidence 4679999999999999999876643322 1 12345789999999999999988899999999999999999999
Q ss_pred HHHHHHhcCCCCchhcccCChhhcCCHHHHHHHHHHH
Q 037763 253 EFRKKVLLGRVKPEKIVNMTAKEMASDKMQLWYENLE 289 (354)
Q Consensus 253 ~Lr~~vl~G~isp~~lv~Ms~eEmAS~e~k~~re~~~ 289 (354)
+||++||+|+|+|++||.||++||||+|+|+||+++.
T Consensus 80 ~Lr~~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~~~ 116 (120)
T 2dme_A 80 ILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRSG 116 (120)
T ss_dssp SHHHHHHHTSSCTTHHHHSCTTTTTTCCSTTTCTTCC
T ss_pred HHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999987754
No 6
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.68 E-value=1e-17 Score=137.32 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=67.1
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhcCCccHHHHHHHHHHhhcCCCcHHhhhcccceeeccccccC-CCHHHHHHHhhhh--c
Q 037763 1 MKEKMMELYEAAKRAAMAAVWKEGGAEEAQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKH-PCEKIQLFAIELI--W 77 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~a~~~~~~~~~~~~~~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh-~~~~I~~~Ak~Li--W 77 (354)
||+|++++++...++++. .+++.|+++|++|+.++||+++|++|+||++||+|||| ++++|+.+|+.|| |
T Consensus 10 ~e~ev~~i~k~L~k~~~~-------~~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 10 LEEELLRIAKKLEKMVSR-------KKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp SHHHHHHHHHHHHHHHHT-------TCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 478999999999887542 23577999999999999999999999999999999999 7899999999999 9
Q ss_pred ccchhhhh
Q 037763 78 TISLKQIY 85 (354)
Q Consensus 78 K~~l~~~~ 85 (354)
|+ +|
T Consensus 83 K~----~v 86 (103)
T 1wjt_A 83 KR----LL 86 (103)
T ss_dssp HH----HT
T ss_pred HH----HH
Confidence 99 88
No 7
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.33 E-value=4.7e-13 Score=95.69 Aligned_cols=39 Identities=15% Similarity=0.668 Sum_probs=36.9
Q ss_pred CcccccceEeCCCCCccceEEeeee---------eeeeccCCCccccc
Q 037763 307 KKIISGICKCGRCRHTRMSFISLRR---------HIACLNCNQYWDST 345 (354)
Q Consensus 307 ~~~~td~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk~~ 345 (354)
+++.|+.++|++||++++.|+|+|| |+.|.+|||+|+||
T Consensus 3 ~~~~t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 3 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 50 (50)
T ss_dssp SCEECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEECC
T ss_pred CCceeCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEeC
Confidence 5678999999999999999999998 99999999999997
No 8
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=98.74 E-value=5e-09 Score=76.52 Aligned_cols=35 Identities=17% Similarity=0.566 Sum_probs=31.8
Q ss_pred cccceEeCCCCCccceEEeeee---------eeeeccCCCcccc
Q 037763 310 ISGICKCGRCRHTRMSFISLRR---------HIACLNCNQYWDS 344 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk~ 344 (354)
.+..++|++||..++.|+|+|| |++|.+|||+|+-
T Consensus 12 ~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 12 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred CceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4447899999999999999998 9999999999985
No 9
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.60 E-value=2e-08 Score=83.26 Aligned_cols=32 Identities=19% Similarity=0.542 Sum_probs=30.1
Q ss_pred cceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 312 GICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
..++|++||++++.|+|+|| |+.|.+|||+|+
T Consensus 71 ~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 71 SDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp CCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred cccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 34899999999999999998 999999999997
No 10
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=98.49 E-value=4.6e-08 Score=82.18 Aligned_cols=34 Identities=21% Similarity=0.614 Sum_probs=31.6
Q ss_pred ceEeCCCCCccceEEeeee---------eeeeccCCCcccccC
Q 037763 313 ICKCGRCRHTRMSFISLRR---------HIACLNCNQYWDSTN 346 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk~~~ 346 (354)
.++|++||++++.|+|+|| |++|.+|||+|+.-+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 6899999999999999998 999999999998754
No 11
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.8e-08 Score=83.92 Aligned_cols=32 Identities=25% Similarity=0.732 Sum_probs=0.0
Q ss_pred cceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 312 GICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
..++|++||.+++.|+|+|| |+.|.+|||+|+
T Consensus 91 t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 91 SDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp -----------------------------------------
T ss_pred ccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 35899999999999999998 999999999997
No 12
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.31 E-value=9.1e-05 Score=63.84 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=53.1
Q ss_pred hcCCccHHHHHHHHHHhhcCCCcHHhhhcccceeeccccccCC--CHHHHHHHhhhh--ccc
Q 037763 22 KEGGAEEAQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHP--CEKIQLFAIELI--WTI 79 (354)
Q Consensus 22 ~~~~~~~~~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~--~~~I~~~Ak~Li--WK~ 79 (354)
|++-|+..---.+|+.|..+||+.+.|.+++||++|..|.+|+ .++++.+|..|| |.+
T Consensus 75 DgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 75 DKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTN 136 (145)
T ss_dssp TSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHH
Confidence 4455888888899999999999999999999999999999997 589999999999 999
No 13
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.09 E-value=0.00021 Score=63.05 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=52.4
Q ss_pred hcCCccHHHHHHHHHHhhcCCCcHHhhhcccceeeccccccCC--CHHHHHHHhhhh--ccc
Q 037763 22 KEGGAEEAQCLDALDQLKNCSITYQLLVSTQVARHLVPMLKHP--CEKIQLFAIELI--WTI 79 (354)
Q Consensus 22 ~~~~~~~~~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~--~~~I~~~Ak~Li--WK~ 79 (354)
|++-|...-=-.+|+.|..+||+.+.|..++||++|..|.+|+ .++++.+|..|| |-.
T Consensus 90 DgSLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 90 DGSLPSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp TSCCCCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCcHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHH
Confidence 3445788888889999999999999999999999999999997 589999999999 988
No 14
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=96.28 E-value=0.0038 Score=50.20 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhc-CCccHHHHHHHHHHhhcCCCcHHhhh-cccceeeccccccCC-CHHHHHHHhhhh-
Q 037763 1 MKEKMMELYEAAKRAAMAAVWKE-GGAEEAQCLDALDQLKNCSITYQLLV-STQVARHLVPMLKHP-CEKIQLFAIELI- 76 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~a~~~~~~~-~~~~~~~~l~~L~~L~~~~~t~~~L~-~T~iG~~v~~Lrkh~-~~~I~~~Ak~Li- 76 (354)
||..|++|.-..+-+ .+ ++++..+|+++|+.|+++++|.-+|+ .+.+--++.+||+.. +..|...|..|+
T Consensus 4 ~E~~l~~L~~~ik~~------L~~~~~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~ 77 (98)
T 2b4j_C 4 MDSRLQRIHAEIKNS------LKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYN 77 (98)
T ss_dssp HHHHHHHHHHHHHHH------TCTTSCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HccCCCCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 578889888777655 44 66899999999999999999996554 666888999999875 899999999999
Q ss_pred -ccc
Q 037763 77 -WTI 79 (354)
Q Consensus 77 -WK~ 79 (354)
.|.
T Consensus 78 kfK~ 81 (98)
T 2b4j_C 78 KFKN 81 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 888
No 15
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=95.60 E-value=0.0059 Score=51.18 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=61.5
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhc-CCccHHHHHHHHHHhhcCCCcHHhhh-cccceeeccccccCC-CHHHHHHHhhhh-
Q 037763 1 MKEKMMELYEAAKRAAMAAVWKE-GGAEEAQCLDALDQLKNCSITYQLLV-STQVARHLVPMLKHP-CEKIQLFAIELI- 76 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~a~~~~~~~-~~~~~~~~l~~L~~L~~~~~t~~~L~-~T~iG~~v~~Lrkh~-~~~I~~~Ak~Li- 76 (354)
||..|++|.-..+-+ .+ ++++..+|+++|+.|.++++|.-+|+ .+.|--++.+||+.. +..|...|..|+
T Consensus 4 ~E~~L~~L~~~Ik~~------L~v~~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~ 77 (127)
T 1z9e_A 4 MDSRLQRIHAEIKNS------LKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYN 77 (127)
T ss_dssp HHHHHHHHHHHHHHH------TCGGGCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HccCCCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 578888888777655 33 56799999999999999999997555 667889999999874 788999999999
Q ss_pred -ccc
Q 037763 77 -WTI 79 (354)
Q Consensus 77 -WK~ 79 (354)
.|.
T Consensus 78 kFK~ 81 (127)
T 1z9e_A 78 KFKN 81 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 887
No 16
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=92.21 E-value=0.048 Score=40.53 Aligned_cols=28 Identities=25% Similarity=0.663 Sum_probs=26.2
Q ss_pred eEeCCCCCccceEEeeeeeeeeccCCCc
Q 037763 314 CKCGRCRHTRMSFISLRRHIACLNCNQY 341 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QTFv~C~~Cgnr 341 (354)
.+|+.|+...+-|...||-|.|..||.-
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCE
T ss_pred EECCCCCCceEEEecCceEEEcccCCCE
Confidence 5899999999999999999999999964
No 17
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=91.02 E-value=0.11 Score=34.09 Aligned_cols=30 Identities=20% Similarity=0.519 Sum_probs=24.7
Q ss_pred EeCCCCCccceEEeeee--eeeeccCCCcccc
Q 037763 315 KCGRCRHTRMSFISLRR--HIACLNCNQYWDS 344 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~QT--Fv~C~~CgnrWk~ 344 (354)
.|+.||..++.+.--.. |..|..||++|-+
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcccc
Confidence 49999999998855333 9999999999865
No 18
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=90.88 E-value=0.068 Score=41.27 Aligned_cols=32 Identities=25% Similarity=0.642 Sum_probs=28.3
Q ss_pred cccce---EeCCCCCccceEEeeeeeeeeccCCCc
Q 037763 310 ISGIC---KCGRCRHTRMSFISLRRHIACLNCNQY 341 (354)
Q Consensus 310 ~td~f---~C~kC~~~k~ty~q~QTFv~C~~Cgnr 341 (354)
...-| +|+.|+...+-|...||.|.|..||.-
T Consensus 26 PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 26 PNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp CSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred CCCcEEEeECCCCCCeeEEEecCccEEEccCCCCE
Confidence 34555 999999999999999999999999974
No 19
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.73 E-value=0.084 Score=38.91 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=26.4
Q ss_pred ceEeCCCCCccceEEeeeeeeeeccCCCc
Q 037763 313 ICKCGRCRHTRMSFISLRRHIACLNCNQY 341 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QTFv~C~~Cgnr 341 (354)
..+|+.|+...+-|...||-|.|..||.-
T Consensus 15 ~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 35999999999999999999999999863
No 20
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=90.29 E-value=0.073 Score=41.52 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=26.3
Q ss_pred eEeCCCCCccceEEeeeeeeeeccCCCc
Q 037763 314 CKCGRCRHTRMSFISLRRHIACLNCNQY 341 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QTFv~C~~Cgnr 341 (354)
.+|+.|+...+.|...||.|.|..||.-
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 5999999999999999999999999964
No 21
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=89.32 E-value=0.13 Score=39.81 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=26.7
Q ss_pred ceEeCCCCCccceEEeeeeeeeeccCCCc
Q 037763 313 ICKCGRCRHTRMSFISLRRHIACLNCNQY 341 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QTFv~C~~Cgnr 341 (354)
..+|+.|+...+-|...||-|.|..||.-
T Consensus 34 ~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 45999999999999999999999999964
No 22
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=88.38 E-value=0.17 Score=42.47 Aligned_cols=32 Identities=19% Similarity=0.555 Sum_probs=25.1
Q ss_pred cccceEeCCCCCccceEEeeeeeeeeccCCCccc
Q 037763 310 ISGICKCGRCRHTRMSFISLRRHIACLNCNQYWD 343 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrWk 343 (354)
.+++-.|++|++.-+ ||-+....|-+|+|.|.
T Consensus 24 M~~lP~CP~C~seyt--YeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 24 VSTLPPCPQCNSEYT--YEDGALLVCPECAHEWS 55 (138)
T ss_dssp CCCSCCCTTTCCCCC--EECSSSEEETTTTEEEC
T ss_pred cccCCCCCCCCCcce--EecCCeEECCccccccC
Confidence 456778999987655 56666667999999995
No 23
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=86.90 E-value=0.23 Score=39.85 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=26.0
Q ss_pred ccccceEeCCCCCccceEEeeee------eeeeccCCCc
Q 037763 309 IISGICKCGRCRHTRMSFISLRR------HIACLNCNQY 341 (354)
Q Consensus 309 ~~td~f~C~kC~~~k~ty~q~QT------Fv~C~~Cgnr 341 (354)
.-.=.|+|..|+.|...-.-.|- ||+|-.|.|+
T Consensus 9 ~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 9 KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred cEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 34567999999998875544443 9999999998
No 24
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=82.90 E-value=0.54 Score=32.41 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=23.3
Q ss_pred cceEeCCCCCccceEEeeeeeeeeccCCCcc
Q 037763 312 GICKCGRCRHTRMSFISLRRHIACLNCNQYW 342 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QTFv~C~~CgnrW 342 (354)
..+.|+.||.....|..-..-+.|..||.-+
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3568999999777675443368899999765
No 25
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=79.46 E-value=0.51 Score=32.68 Aligned_cols=28 Identities=21% Similarity=0.646 Sum_probs=21.8
Q ss_pred ceEeCCCCCccceEEeeee--eeeeccCCCc
Q 037763 313 ICKCGRCRHTRMSFISLRR--HIACLNCNQY 341 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QT--Fv~C~~Cgnr 341 (354)
.|.|+|||. ..++.|+-. -|.|..||.|
T Consensus 3 iY~C~rCg~-~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 3 VYRCGKCWK-TFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp --CCCCTTT-TCCCCCSCCCSSSCCTTTCCS
T ss_pred EEEeeccCC-CccHHHHhhCCCcccCccCcE
Confidence 478999975 567788877 8999999987
No 26
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=77.64 E-value=0.81 Score=33.68 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=21.4
Q ss_pred ccceEeCCCCCccceEEeeeeeeeeccCCCcc
Q 037763 311 SGICKCGRCRHTRMSFISLRRHIACLNCNQYW 342 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrW 342 (354)
.-.|.|++||....-- .-.-+.|.+||+|-
T Consensus 19 ~v~Y~C~~Cg~~~~l~--~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ--AKEVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCC--SSSCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecC--CCCceECCCCCcEE
Confidence 4569999998776411 11278999999983
No 27
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=77.50 E-value=0.76 Score=36.33 Aligned_cols=33 Identities=21% Similarity=0.575 Sum_probs=20.8
Q ss_pred ccccceEeCCCCCccceEEeeeeeeeeccCCC-ccc
Q 037763 309 IISGICKCGRCRHTRMSFISLRRHIACLNCNQ-YWD 343 (354)
Q Consensus 309 ~~td~f~C~kC~~~k~ty~q~QTFv~C~~Cgn-rWk 343 (354)
+.---|+|+ |+++-++| +.=--..|.+||. .|.
T Consensus 44 a~KRFFkC~-C~~Rt~sl-~r~P~~~C~~Cg~~~we 77 (92)
T 2kwq_A 44 GVKRFFKCP-CGNRTISL-DRLPKKHCSTCGLFKWE 77 (92)
T ss_dssp EECEEEECT-TSCEEEES-SSSCCSCCTTTCSCCCE
T ss_pred eeEEEEECC-CCCceeEe-eeCCCCCCCCCCCCceE
Confidence 455668886 88888877 2111567888874 443
No 28
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=77.26 E-value=0.95 Score=33.71 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=27.8
Q ss_pred ccceEeCCCCCccceEEeeeeeeeeccCCCcccccCCCcccc
Q 037763 311 SGICKCGRCRHTRMSFISLRRHIACLNCNQYWDSTNPGIEVL 352 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrWk~~~~~~~~~ 352 (354)
-+.+.|+.|++. -.|.......+|..|| +|+=-+++|-+|
T Consensus 6 L~iL~CP~ck~~-L~~~~~~~~LiC~~cg-~~YPI~dGIPvm 45 (68)
T 2jr6_A 6 LDILVCPVTKGR-LEYHQDKQELWSRQAK-LAYPIKDGIPYM 45 (68)
T ss_dssp SCCCBCSSSCCB-CEEETTTTEEEETTTT-EEEEEETTEECC
T ss_pred hhheECCCCCCc-CeEeCCCCEEEcCCCC-cEecCCCCeeee
Confidence 456789999973 4454433477899997 566667777665
No 29
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=76.52 E-value=0.93 Score=33.76 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=27.8
Q ss_pred ccceEeCCCCCccceEEeeeeeeeeccCCCcccccCCCcccc
Q 037763 311 SGICKCGRCRHTRMSFISLRRHIACLNCNQYWDSTNPGIEVL 352 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrWk~~~~~~~~~ 352 (354)
-+.+.|+.|++. -.|.......+|..|| +|+=-+++|-+|
T Consensus 6 L~iL~CP~ck~~-L~~~~~~~~LiC~~cg-~~YPI~dGIPvm 45 (68)
T 2hf1_A 6 LEILVCPLCKGP-LVFDKSKDELICKGDR-LAFPIKDGIPMM 45 (68)
T ss_dssp EEECBCTTTCCB-CEEETTTTEEEETTTT-EEEEEETTEECC
T ss_pred hhheECCCCCCc-CeEeCCCCEEEcCCCC-cEecCCCCeeee
Confidence 456789999974 4454433477899997 566667777665
No 30
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=76.44 E-value=1 Score=33.77 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=27.2
Q ss_pred ccceEeCCCCCccceEEeeeeeeeeccCCCcccccCCCcccc
Q 037763 311 SGICKCGRCRHTRMSFISLRRHIACLNCNQYWDSTNPGIEVL 352 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrWk~~~~~~~~~ 352 (354)
-+.+.|+.|++. -.|.......+|..|| +|+=-+++|-+|
T Consensus 6 L~iL~CP~ck~~-L~~~~~~~~LiC~~cg-~~YPI~dGIPvm 45 (70)
T 2js4_A 6 LDILVCPVCKGR-LEFQRAQAELVCNADR-LAFPVRDGVPIM 45 (70)
T ss_dssp CCCCBCTTTCCB-EEEETTTTEEEETTTT-EEEEEETTEECC
T ss_pred hhheECCCCCCc-CEEeCCCCEEEcCCCC-ceecCCCCeeee
Confidence 456789999994 4444333377899997 555556777665
No 31
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=73.63 E-value=1.2 Score=33.22 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=27.6
Q ss_pred ccceEeCCCCCccceEEeeeeeeeeccCCCcccccCCCcccc
Q 037763 311 SGICKCGRCRHTRMSFISLRRHIACLNCNQYWDSTNPGIEVL 352 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrWk~~~~~~~~~ 352 (354)
-+.+.|+.|++. -.|.......+|..|| +|+=-+++|-+|
T Consensus 6 LeiL~CP~ck~~-L~~~~~~~~LiC~~cg-~~YPI~dGIPvm 45 (69)
T 2pk7_A 6 LDILACPICKGP-LKLSADKTELISKGAG-LAYPIRDGIPVM 45 (69)
T ss_dssp GGTCCCTTTCCC-CEECTTSSEEEETTTT-EEEEEETTEECC
T ss_pred HhheeCCCCCCc-CeEeCCCCEEEcCCCC-cEecCcCCeeee
Confidence 456789999974 3444333477899997 555567777665
No 32
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=72.45 E-value=1.8 Score=37.03 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=35.0
Q ss_pred ChhhcCCHHHHHHHHHHHHHhcCCcCcccccccCCCcccccceEeCCCCCccceEEeeee-eeeeccCCCcccccCC
Q 037763 272 TAKEMASDKMQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRR-HIACLNCNQYWDSTNP 347 (354)
Q Consensus 272 s~eEmAS~e~k~~re~~~~~~~~~~~~~~~~~~~~~~~~td~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrWk~~~~ 347 (354)
+.-.|+++.-++.-.++....+ .-.|..|+.+..+|-.+-. .+.|++|.-.-+-.+.
T Consensus 16 ~~~~m~~~~~~~~l~~L~~~p~-------------------N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 16 PRGSMASPRTRKVLKEVRVQDE-------------------NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGV 73 (147)
T ss_dssp ------CHHHHHHHHHHHTSTT-------------------TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCCCCHHHHHHHHHHHcCcC-------------------CCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCC
Confidence 3446788877766666653222 2279999999999988776 6679999744443333
No 33
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=72.11 E-value=5.3 Score=30.76 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=22.1
Q ss_pred cccceEeCCCCCccceEEeeeeeeeeccCCCcc
Q 037763 310 ISGICKCGRCRHTRMSFISLRRHIACLNCNQYW 342 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrW 342 (354)
+...|+|+.||.. ..|..-.-...|-.||+.+
T Consensus 24 q~~~y~Cp~CG~~-~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 24 MNEDHACPNCGED-RVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHSCEECSSSCCE-EEEEEETTEEEETTTCCEE
T ss_pred ccccCcCCCCCCc-ceeccCCCeEECCCCCCEe
Confidence 3346899999974 3444333378899999873
No 34
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=72.07 E-value=3 Score=32.35 Aligned_cols=39 Identities=15% Similarity=0.407 Sum_probs=28.8
Q ss_pred ccccceEeCCCCCccceEEeee----e-eeeeccCCCcccccCC
Q 037763 309 IISGICKCGRCRHTRMSFISLR----R-HIACLNCNQYWDSTNP 347 (354)
Q Consensus 309 ~~td~f~C~kC~~~k~ty~q~Q----T-Fv~C~~CgnrWk~~~~ 347 (354)
.-...|.|+-|+..++---.+- + .+.|..||-++-+--.
T Consensus 19 ~L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~ 62 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPIT 62 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECC
T ss_pred CCCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccC
Confidence 3558899999999975433332 1 9999999998876433
No 35
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=71.55 E-value=1.4 Score=32.97 Aligned_cols=31 Identities=13% Similarity=0.302 Sum_probs=20.7
Q ss_pred ccccceEeCCCCCccceEEeeeeeeeeccCCCc
Q 037763 309 IISGICKCGRCRHTRMSFISLRRHIACLNCNQY 341 (354)
Q Consensus 309 ~~td~f~C~kC~~~k~ty~q~QTFv~C~~Cgnr 341 (354)
...-.|.|+.||...--- ...-+.|.+||+|
T Consensus 24 ~~~v~Y~C~~CG~~~e~~--~~d~irCp~CG~R 54 (70)
T 1twf_L 24 TATLKYICAECSSKLSLS--RTDAVRCKDCGHR 54 (70)
T ss_dssp -CCCCEECSSSCCEECCC--TTSTTCCSSSCCC
T ss_pred CceEEEECCCCCCcceeC--CCCCccCCCCCce
Confidence 356779999999873211 0115789999995
No 36
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=71.32 E-value=1.7 Score=32.30 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=28.6
Q ss_pred cccceEeCCCCCccceEEeeeeeeeeccCCCcccccCCCcccc
Q 037763 310 ISGICKCGRCRHTRMSFISLRRHIACLNCNQYWDSTNPGIEVL 352 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrWk~~~~~~~~~ 352 (354)
--+.+.|+.|++ .-.|........|..|| +|+=-+++|-+|
T Consensus 7 LLeiL~CP~ck~-~L~~~~~~g~LvC~~c~-~~YPI~dGIPvm 47 (67)
T 2jny_A 7 LLEVLACPKDKG-PLRYLESEQLLVNERLN-LAYRIDDGIPVL 47 (67)
T ss_dssp GTCCCBCTTTCC-BCEEETTTTEEEETTTT-EEEEEETTEECC
T ss_pred HHHHhCCCCCCC-cCeEeCCCCEEEcCCCC-ccccCCCCEeee
Confidence 346778999999 45555443366799997 555667777665
No 37
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=70.51 E-value=1.5 Score=31.38 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=21.3
Q ss_pred eEeCCCCCccceEEeeeeeeeeccCCC
Q 037763 314 CKCGRCRHTRMSFISLRRHIACLNCNQ 340 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QTFv~C~~Cgn 340 (354)
.+|+.||.....|..-..-+.|.+||-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 379999997777655555888999984
No 38
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.67 E-value=3.4 Score=39.40 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=25.3
Q ss_pred cceEeCCCCCccceEEeee----e----eeeeccCCCcccccC
Q 037763 312 GICKCGRCRHTRMSFISLR----R----HIACLNCNQYWDSTN 346 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~Q----T----Fv~C~~CgnrWk~~~ 346 (354)
..-.|+-||+.-..- .+. . |..|.-||..|.|-|
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R 222 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVR 222 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCT
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecC
Confidence 344799999987643 222 1 999999999999865
No 39
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=65.55 E-value=1.9 Score=36.87 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=23.8
Q ss_pred EeCCCCCccceEEeee-e-eeeeccCCCcccc
Q 037763 315 KCGRCRHTRMSFISLR-R-HIACLNCNQYWDS 344 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~Q-T-Fv~C~~CgnrWk~ 344 (354)
.|+.||...|.+.--. + |..|..||.++-.
T Consensus 106 lC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 106 ICPVCGSPDTKIIKRDRFHFLKCEACGAETPI 137 (148)
T ss_dssp SCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCC
T ss_pred ECCCCCCcCcEEEEeCCEEEEEecCCCCCccc
Confidence 6999999998875322 2 9999999998754
No 40
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=63.28 E-value=3.1 Score=35.11 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=22.0
Q ss_pred EeCCCCCccceEEeeee--eeeeccCCCc
Q 037763 315 KCGRCRHTRMSFISLRR--HIACLNCNQY 341 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~QT--Fv~C~~Cgnr 341 (354)
.|+.|+...|.+.--.. |..|..||.+
T Consensus 104 lC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 104 ICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred ECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 69999999988764322 9999999986
No 41
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.63 E-value=3.4 Score=35.67 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=24.0
Q ss_pred EeCCCCCccceEEe---eee-eeeeccCCCcccc
Q 037763 315 KCGRCRHTRMSFIS---LRR-HIACLNCNQYWDS 344 (354)
Q Consensus 315 ~C~kC~~~k~ty~q---~QT-Fv~C~~CgnrWk~ 344 (354)
.|..|+...|.+.- -++ |..|..||.+--+
T Consensus 105 lC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 105 LCPECENPETDLHVNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp SCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccCCCCCCcc
Confidence 69999999998874 233 9999999986543
No 42
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=60.85 E-value=5.4 Score=33.61 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=37.1
Q ss_pred cCChhhcCCHHHHHHH-HHHHHHhcCCcCcccccccCCCcccccceEeCCCCCccceEEeeee-eeeeccCCCcccccCC
Q 037763 270 NMTAKEMASDKMQLWY-ENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRR-HIACLNCNQYWDSTNP 347 (354)
Q Consensus 270 ~Ms~eEmAS~e~k~~r-e~~~~~~~~~~~~~~~~~~~~~~~~td~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrWk~~~~ 347 (354)
.++..-|++++.++.- +.+.... +.-.|..||....+|--+-. .+.|..|.-.-+-.+.
T Consensus 11 ~~~~~~~~~~~~~~~l~~~l~~~p-------------------~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 11 DVDEKGFVSDKLRDNFFQIVRNRP-------------------ENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGV 71 (138)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHSG-------------------GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCT
T ss_pred hccCCCCCCHHHHHHHHHHHHcCc-------------------CCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCC
Confidence 4556668888765543 3343322 22379999999998876655 4459999754444333
No 43
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=53.98 E-value=6.9 Score=34.17 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=24.4
Q ss_pred EeCCCCCccceEEee---ee-eeeeccCCCcccc
Q 037763 315 KCGRCRHTRMSFISL---RR-HIACLNCNQYWDS 344 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~---QT-Fv~C~~CgnrWk~ 344 (354)
.|..|+...|.+.-- ++ |..|..||.+--+
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCcccc
Confidence 699999999988652 33 9999999987654
No 44
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=52.82 E-value=3 Score=35.23 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=19.9
Q ss_pred cceEeCCCCCccceEEeee-e-eeeeccCCCc
Q 037763 312 GICKCGRCRHTRMSFISLR-R-HIACLNCNQY 341 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~Q-T-Fv~C~~Cgnr 341 (354)
.--.|+.||...|.+.--. + |..|..||.+
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred HeeECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 3457999999998775432 2 9999999976
No 45
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=51.11 E-value=1.7 Score=29.94 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=22.9
Q ss_pred ceEeCCCCCccceEEeeee--eeeeccCCCccccc
Q 037763 313 ICKCGRCRHTRMSFISLRR--HIACLNCNQYWDST 345 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QT--Fv~C~~CgnrWk~~ 345 (354)
...|..|+..++....-.- -..|+.||-+|+--
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 3469999988764322211 67899999999863
No 46
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=50.71 E-value=4.1 Score=39.92 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=27.1
Q ss_pred ccceEeCCCCCccceEEeeeeeeeeccCCCcccccCC
Q 037763 311 SGICKCGRCRHTRMSFISLRRHIACLNCNQYWDSTNP 347 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QTFv~C~~CgnrWk~~~~ 347 (354)
--.+.|..|+.+...|..-..-..|..||.+|.+.+|
T Consensus 242 g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~~~GP 278 (392)
T 3axs_A 242 GYIQYCFNCMNREVVTDLYKFKEKCPHCGSKFHIGGP 278 (392)
T ss_dssp EEEEECTTTCCEEEECCGGGCCSBCTTTCSBCEEEEE
T ss_pred ceEEECCCCCCeEeecCCCCCCCcCCCCCCccceecc
Confidence 3457899999987755321125679999999998876
No 47
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=50.70 E-value=2.1 Score=29.02 Aligned_cols=30 Identities=13% Similarity=0.382 Sum_probs=21.4
Q ss_pred EeCCCCCccceEEeeee--eeeeccCCCcccc
Q 037763 315 KCGRCRHTRMSFISLRR--HIACLNCNQYWDS 344 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~QT--Fv~C~~CgnrWk~ 344 (354)
.|..|+...+....-.- -..|+.||-+|+.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 58889887764333222 6789999999986
No 48
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=49.23 E-value=8 Score=32.90 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=11.8
Q ss_pred eeeeccCCCccccc
Q 037763 332 HIACLNCNQYWDST 345 (354)
Q Consensus 332 Fv~C~~CgnrWk~~ 345 (354)
.+.|.+||..|=+-
T Consensus 69 ~I~C~~Cgq~WG~~ 82 (145)
T 3eqt_A 69 VISCRNCGEVWGLQ 82 (145)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEchhhChhhHhh
Confidence 78899999999553
No 49
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=49.10 E-value=5.1 Score=23.81 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.5
Q ss_pred ccCCCcccccC
Q 037763 336 LNCNQYWDSTN 346 (354)
Q Consensus 336 ~~CgnrWk~~~ 346 (354)
-+|||.|-+.+
T Consensus 16 dncgnswacsg 26 (27)
T 2hgo_A 16 DNCGNSWACSG 26 (27)
T ss_dssp CSSSCEEECSC
T ss_pred CCcCCcccccC
Confidence 47999998753
No 50
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=48.84 E-value=6.2 Score=26.11 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=11.3
Q ss_pred ccccceEeCCCCCc
Q 037763 309 IISGICKCGRCRHT 322 (354)
Q Consensus 309 ~~td~f~C~kC~~~ 322 (354)
+..+.|.|.+||+.
T Consensus 5 ~~~~~~~C~~C~~~ 18 (39)
T 2i5o_A 5 AAEDQVPCEKCGSL 18 (39)
T ss_dssp -CCCEEECTTTCCE
T ss_pred CcCCCcccccccCc
Confidence 46788999999876
No 51
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=46.62 E-value=8.4 Score=32.76 Aligned_cols=38 Identities=21% Similarity=0.467 Sum_probs=28.0
Q ss_pred cccccceEeCCCCCccceEEeeee-----------------------------------eeeec--cCCCccccc
Q 037763 308 KIISGICKCGRCRHTRMSFISLRR-----------------------------------HIACL--NCNQYWDST 345 (354)
Q Consensus 308 ~~~td~f~C~kC~~~k~ty~q~QT-----------------------------------Fv~C~--~CgnrWk~~ 345 (354)
...+-.|-|.+|+.-=|+=..++. .+.|. +||+.|=+-
T Consensus 22 ~~~~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~~~y~v~~~~~~k~f~d~~~~g~I~C~~~~Cg~~WG~~ 96 (145)
T 2qfd_A 22 DKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIH 96 (145)
T ss_dssp -CCCCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGGGTEEEEECSSCCCCSSEEEEEEEEECSTTTCCEEEEE
T ss_pred CccceEEEccCCCeeEEcccceeEecCCcEEecCcCceeeEEEcCCcccchhhceeCCceEEeCCcccCcchhce
Confidence 346667899999988776544432 78899 999999653
No 52
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=46.18 E-value=10 Score=35.15 Aligned_cols=34 Identities=15% Similarity=0.472 Sum_probs=22.8
Q ss_pred cccccceEeCCCCCccceEEeeee------eeeeccCCCc-ccc
Q 037763 308 KIISGICKCGRCRHTRMSFISLRR------HIACLNCNQY-WDS 344 (354)
Q Consensus 308 ~~~td~f~C~kC~~~k~ty~q~QT------Fv~C~~Cgnr-Wk~ 344 (354)
......|.|.+||.. . ++-|+ -..|.+|+++ |..
T Consensus 129 ~~~~~~f~C~~C~~~--~-~v~~~~~~~~~P~~Cp~C~~~~f~l 169 (279)
T 1ltl_A 129 RIVKAVFECRGCMRH--H-AVTQSTNMITEPSLCSECGGRSFRL 169 (279)
T ss_dssp EEEEEEEEETTTCCE--E-EEECSSSSCCCCSCCTTTCCCCEEE
T ss_pred EEEEEEEEcCCCCCE--E-EEEecCCcccCCCcCCCCCCCCcEE
Confidence 346677999999954 2 33343 2469999987 543
No 53
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=45.19 E-value=3.9 Score=30.18 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=25.5
Q ss_pred ccceEeCCCCCccceEEeeee----eeeeccCCCcccccC
Q 037763 311 SGICKCGRCRHTRMSFISLRR----HIACLNCNQYWDSTN 346 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QT----Fv~C~~CgnrWk~~~ 346 (354)
.....|..|+...+. +++. ...|+.||-+|+.-.
T Consensus 7 ~~~~~C~~C~t~~Tp--~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTP--LWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCS--SCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCC--cCCcCCCCCCccHHHHHHHHHcC
Confidence 445689999988775 3433 678999999998643
No 54
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.49 E-value=11 Score=28.75 Aligned_cols=11 Identities=27% Similarity=1.156 Sum_probs=8.8
Q ss_pred eeeeccCCCcc
Q 037763 332 HIACLNCNQYW 342 (354)
Q Consensus 332 Fv~C~~CgnrW 342 (354)
+..|.+|+..|
T Consensus 51 ~~FC~~C~~~w 61 (86)
T 2ct7_A 51 QTFCVRCKRQW 61 (86)
T ss_dssp CEECSSSCSBC
T ss_pred CccccccCCch
Confidence 67788888888
No 55
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=43.74 E-value=4.2 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=23.3
Q ss_pred ceEeCCCCCccceEEeeee---------eeeeccCCCcccc
Q 037763 313 ICKCGRCRHTRMSFISLRR---------HIACLNCNQYWDS 344 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk~ 344 (354)
-|+|..||+.=.+...++. -..|..||..+..
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 3899999987665555554 5679999987643
No 56
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=42.86 E-value=9.5 Score=35.84 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=21.3
Q ss_pred EeCCCCCccceEEeeee-eeeeccCC
Q 037763 315 KCGRCRHTRMSFISLRR-HIACLNCN 339 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~QT-Fv~C~~Cg 339 (354)
.|..||....+|-.+=. .+.|..|.
T Consensus 39 ~c~dc~~~~~~~~~~~~~~~~c~~c~ 64 (329)
T 3o47_A 39 VCFECGAFNPQWVSVTYGIWICLECS 64 (329)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHH
T ss_pred cCCCCCCCCCCeEEecCCEEEChhhh
Confidence 79999999999988766 55699997
No 57
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.05 E-value=34 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.438 Sum_probs=19.6
Q ss_pred cceEeCCCCCccceEEeeee-eeeeccCCCcc
Q 037763 312 GICKCGRCRHTRMSFISLRR-HIACLNCNQYW 342 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrW 342 (354)
..+.|+.||+.++. -..+ .-.|-.||..|
T Consensus 34 ~ky~CpfCGk~~vk--R~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 34 QKHTCPVCGRKAVK--RISTGIWQCQKCGATF 63 (83)
T ss_dssp SCBCCSSSCSSCEE--EEETTEEEETTTCCEE
T ss_pred cccCCCCCCCceeE--ecCcCeEEcCCCCCEE
Confidence 34689999987532 2223 77899998765
No 58
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=40.85 E-value=49 Score=25.26 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhccCChHHHHHhhHHHHHHHhCCCchhhhhhHhhHHhhcC
Q 037763 175 NDCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNIN 247 (354)
Q Consensus 175 ~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~lA~~IE~aif~~~~~~~~~Yk~k~Rsl~~NLK 247 (354)
...+|+..++-|..|+..... +.. +.+ ..-.+....|..+|..+|+.-.+ ..+|-..+.-.+.++.
T Consensus 11 t~~lR~hlv~Klv~aI~P~pd--p~a---~~d-~rm~~l~~yArkvE~~~ye~A~s-rdeYY~llA~kiykiq 76 (81)
T 1kdx_A 11 TQDLRSHLVHKLVQAIFPTPD--PAA---LKD-RRMENLVAYAKKVEGDMYESANS-RDEYYHLLAEKIYKIQ 76 (81)
T ss_dssp CHHHHHHHHHHHHHHHSCCSS--GGG---GGS-HHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCC--hhh---hhh-HHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Confidence 378999999999999875321 000 000 01112357899999999987543 4578777776666653
No 59
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.11 E-value=22 Score=26.39 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=10.8
Q ss_pred eeeeccCCCcccc
Q 037763 332 HIACLNCNQYWDS 344 (354)
Q Consensus 332 Fv~C~~CgnrWk~ 344 (354)
...|..||..|-.
T Consensus 36 ~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 36 GLYCVHCEESIMN 48 (78)
T ss_dssp EEEETTTCCEECC
T ss_pred eEECCCCCCEEEC
Confidence 7789999998854
No 60
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=39.57 E-value=5 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=18.0
Q ss_pred eEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 314 CKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
|+|..|+..=.+...++. -..|..||..+.
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 577777766544444432 456888876543
No 61
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=39.31 E-value=15 Score=26.04 Aligned_cols=39 Identities=23% Similarity=0.546 Sum_probs=25.6
Q ss_pred cccceEeCCCCCccceEEeeeeeeeec--cCCCcccccCCCcccc
Q 037763 310 ISGICKCGRCRHTRMSFISLRRHIACL--NCNQYWDSTNPGIEVL 352 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QTFv~C~--~CgnrWk~~~~~~~~~ 352 (354)
--+.+.|+.|++. -.|.. ....|. .||..| =-+++|-+|
T Consensus 7 lL~iL~CP~c~~~-L~~~~--~~L~C~~~~c~~~Y-PI~dGIPvl 47 (56)
T 2kpi_A 7 LLEILACPACHAP-LEERD--AELICTGQDCGLAY-PVRDGIPVL 47 (56)
T ss_dssp CTTSCCCSSSCSC-EEEET--TEEEECSSSCCCEE-EEETTEECC
T ss_pred HHhheeCCCCCCc-ceecC--CEEEcCCcCCCcEE-eeECCEeee
Confidence 4467799999994 33333 356699 898554 446777555
No 62
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=38.76 E-value=6.5 Score=27.67 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=25.2
Q ss_pred ccccceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 309 IISGICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 309 ~~td~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
.....|+|..|++.=.+...++. -..|..||..+.
T Consensus 13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEES
T ss_pred CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhC
Confidence 35567999999987665555543 467999997654
No 63
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.53 E-value=50 Score=26.44 Aligned_cols=71 Identities=15% Similarity=0.295 Sum_probs=38.9
Q ss_pred cCCCCchhcccCChh-hcCCHH-HHHHHHHHHHHhcCCcCcccccccCCCcccccceEeCCCCCccceEEeeee-eeeec
Q 037763 260 LGRVKPEKIVNMTAK-EMASDK-MQLWYENLEKERAGTNGRIFSGIVSPKKIISGICKCGRCRHTRMSFISLRR-HIACL 336 (354)
Q Consensus 260 ~G~isp~~lv~Ms~e-EmAS~e-~k~~re~~~~~~~~~~~~~~~~~~~~~~~~td~f~C~kC~~~k~ty~q~QT-Fv~C~ 336 (354)
.+.+++.+|+.+-.- .+...+ .=.--+.+.+-..... ..-..--|+|.+||-. |..-.. =..|-
T Consensus 22 ~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g----------~~L~v~p~~C~~CG~~---F~~~~~kPsrCP 88 (105)
T 2gmg_A 22 EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREG----------MVLLIKPAQCRKCGFV---FKAEINIPSRCP 88 (105)
T ss_dssp TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTT----------EEEEECCCBBTTTCCB---CCCCSSCCSSCS
T ss_pred cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCC----------cEEEEECcChhhCcCe---ecccCCCCCCCc
Confidence 566888888554433 245555 3333344443222210 0124556799999865 211111 57899
Q ss_pred cCCCccc
Q 037763 337 NCNQYWD 343 (354)
Q Consensus 337 ~CgnrWk 343 (354)
.|+-.|-
T Consensus 89 ~CkSe~I 95 (105)
T 2gmg_A 89 KCKSEWI 95 (105)
T ss_dssp SSCCCCB
T ss_pred CCCCCcc
Confidence 9998884
No 64
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=37.05 E-value=18 Score=35.69 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred cceEeCCCCCccceEEeeee-----------eeeeccCCCcc
Q 037763 312 GICKCGRCRHTRMSFISLRR-----------HIACLNCNQYW 342 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT-----------Fv~C~~CgnrW 342 (354)
-...|+.|++. +.+.-+.| -..|-.||+|.
T Consensus 219 ~~s~Cp~C~~~-~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 219 FNTNCPECNAP-AQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EEECCTTTCCT-TCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred ecccCccCCCc-cEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 34469999964 55544444 45699999886
No 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=36.86 E-value=5.6 Score=26.63 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=18.0
Q ss_pred eEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 314 CKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
|+|..|+..=.+...++. -..|..||..+.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 677777765444444432 456777876543
No 66
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=36.84 E-value=11 Score=29.40 Aligned_cols=13 Identities=46% Similarity=1.071 Sum_probs=10.9
Q ss_pred eeeeccCCCcccc
Q 037763 332 HIACLNCNQYWDS 344 (354)
Q Consensus 332 Fv~C~~CgnrWk~ 344 (354)
+++|++||..+|+
T Consensus 21 ~iiClecGK~fK~ 33 (87)
T 2jsp_A 21 HIVCLECGGSFKS 33 (87)
T ss_dssp CEECTBTCCEESB
T ss_pred ceEecccchhhHH
Confidence 8889999988775
No 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.63 E-value=6.3 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=23.5
Q ss_pred cccceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 310 ISGICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
....|+|..|++.=.+...++. -..|..||..+.
T Consensus 6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 3456999999986554444443 467999997764
No 68
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.60 E-value=6.4 Score=27.63 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=23.8
Q ss_pred cccceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 310 ISGICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
....|+|..|++.=.+...++. -+.|..||..+.
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 3456999999986555444543 567999997654
No 69
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=36.05 E-value=6.3 Score=25.99 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=20.4
Q ss_pred ceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 313 ICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
.|+|..|++.=.+...++. -..|..||..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 4789999876555554443 467888986543
No 70
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=36.00 E-value=15 Score=30.60 Aligned_cols=14 Identities=36% Similarity=0.942 Sum_probs=11.9
Q ss_pred eeeec--cCCCccccc
Q 037763 332 HIACL--NCNQYWDST 345 (354)
Q Consensus 332 Fv~C~--~CgnrWk~~ 345 (354)
.+.|. +||+.|=+-
T Consensus 61 ~I~C~~~~Cg~~WG~~ 76 (131)
T 4a2v_A 61 KMYCRNNNCQHDWGIT 76 (131)
T ss_dssp EEEESCTTTCCEEEEE
T ss_pred EEEeCccccChhhhhh
Confidence 88999 999999543
No 71
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.88 E-value=3.2 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=17.9
Q ss_pred ceEeCCCCCccceEEeeee-eeeec
Q 037763 313 ICKCGRCRHTRMSFISLRR-HIACL 336 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QT-Fv~C~ 336 (354)
.|+|+.|+..-..+.++|. |-.|+
T Consensus 3 k~~CpvCk~q~Pd~kt~~~H~e~~~ 27 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTLQIHVMECI 27 (28)
T ss_dssp CEECTTSSCEESSHHHHHHHHHHCC
T ss_pred cccCccccccCcChHHHHHHHHHHc
Confidence 5899999987777766665 65554
No 72
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=35.47 E-value=48 Score=24.79 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=20.0
Q ss_pred cccceEeCCCCCccceEEeeee-eeeeccCCCcc
Q 037763 310 ISGICKCGRCRHTRMSFISLRR-HIACLNCNQYW 342 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrW 342 (354)
+-..++|+.||+..+. -.-+ .-.|-.||..|
T Consensus 24 q~~ky~C~fCgk~~vk--R~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLK--RASTSIWVCGHCGYKI 55 (73)
T ss_pred cccCccCCCCCCceeE--EEEeEEEECCCCCcEE
Confidence 3445789999865432 2223 78899998763
No 73
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=34.93 E-value=16 Score=29.98 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=11.9
Q ss_pred eeeec--cCCCccccc
Q 037763 332 HIACL--NCNQYWDST 345 (354)
Q Consensus 332 Fv~C~--~CgnrWk~~ 345 (354)
.+.|. +||+.|=+-
T Consensus 59 ~I~C~~~~Cg~~WG~~ 74 (121)
T 3lrr_A 59 KIFCARQNCSHDWGIH 74 (121)
T ss_dssp EEEECSTTTCCEEEEE
T ss_pred EEEeCccccChhhhhe
Confidence 88999 999999543
No 74
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=34.55 E-value=16 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.809 Sum_probs=20.5
Q ss_pred ccccceEeCCCCCccceEEeeeeeeeeccCC
Q 037763 309 IISGICKCGRCRHTRMSFISLRRHIACLNCN 339 (354)
Q Consensus 309 ~~td~f~C~kC~~~k~ty~q~QTFv~C~~Cg 339 (354)
....+-.|+.||+.+-. ...|.+||
T Consensus 26 ~~p~l~~c~~cG~~~~p------H~vc~~CG 50 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKLS------HHICPNCG 50 (60)
T ss_dssp CCCCCEECTTTCCEECT------TBCCTTTC
T ss_pred cCCCceECCCCCCEeCC------ceEcCCCC
Confidence 46788899999998654 67799999
No 75
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=33.99 E-value=23 Score=29.98 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=23.6
Q ss_pred EeCCCCCccceEEeeee-eeeeccCCCcccccC
Q 037763 315 KCGRCRHTRMSFISLRR-HIACLNCNQYWDSTN 346 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~QT-Fv~C~~CgnrWk~~~ 346 (354)
.|..||....+|--+-. .+.|..|.-.-+-.+
T Consensus 39 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG 71 (144)
T 2p57_A 39 ACFDCGAKNPSWASITYGVFLCIDCSGVHRSLG 71 (144)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHC
T ss_pred cCCCCcCCCCCeEEeccCEEEhhhchHHHcCCC
Confidence 79999999999977655 445999975444333
No 76
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=33.82 E-value=17 Score=28.58 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=22.1
Q ss_pred CcccccceEeCCCCCccceEEe-------------eee---eeeeccCCCcccc
Q 037763 307 KKIISGICKCGRCRHTRMSFIS-------------LRR---HIACLNCNQYWDS 344 (354)
Q Consensus 307 ~~~~td~f~C~kC~~~k~ty~q-------------~QT---Fv~C~~CgnrWk~ 344 (354)
....-..|.|..|+ .+.+.. +.. |+.|. ||+|=-.
T Consensus 9 ~e~~~~av~C~~C~--yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~-C~~Rt~s 59 (92)
T 2kwq_A 9 REQSCRVVTCKTCK--YTHFKPKETCVSENHDFHWHNGVKRFFKCP-CGNRTIS 59 (92)
T ss_dssp SCCEEEEEEETTTC--CEESSCCHHHHHTTCCEEEEEEECEEEECT-TSCEEEE
T ss_pred eEEeEEEEEccCCc--ceecCcchhHHhcCCceEEEeeeEEEEECC-CCCceeE
Confidence 34466788999887 222222 222 99996 9998543
No 77
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=32.97 E-value=51 Score=25.82 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=19.5
Q ss_pred cceEeCCCCCccceEEeeee-eeeeccCCCcc
Q 037763 312 GICKCGRCRHTRMSFISLRR-HIACLNCNQYW 342 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrW 342 (354)
..+.|+.||+..+.- .-+ .-.|-.||..|
T Consensus 35 ~ky~CpfCgk~~vkR--~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKR--KAVGIWGCKDCGKVK 64 (92)
T ss_dssp SCBCCTTTCSSCBEE--EETTEEECSSSCCEE
T ss_pred ccccCcccCCCeeEe--cCcceEEcCCCCCEE
Confidence 446899999875422 223 67899998754
No 78
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.82 E-value=18 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=18.3
Q ss_pred ccceEeCCCCCccceEEeeee-eeeeccCCCc
Q 037763 311 SGICKCGRCRHTRMSFISLRR-HIACLNCNQY 341 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QT-Fv~C~~Cgnr 341 (354)
-+...|++|+.+ +-+ ...|-.||+.
T Consensus 12 ~~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred hCCccCCCCCCc------CCCCceecCCCCCc
Confidence 355679999987 334 7778888876
No 79
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=32.55 E-value=11 Score=31.45 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=23.0
Q ss_pred cceEeCCCCCccceEEeeee-eeeeccCCCcc
Q 037763 312 GICKCGRCRHTRMSFISLRR-HIACLNCNQYW 342 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrW 342 (354)
+.-.|..||....+|--+-. .+.|+.|..--
T Consensus 26 ~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiH 57 (134)
T 2iqj_A 26 DNKFCADCQSKGPRWASWNIGVFICIRCAGIH 57 (134)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CCCcCCcCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 33479999999999877665 44599996433
No 80
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=32.53 E-value=67 Score=26.18 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=20.5
Q ss_pred cccceEeCCCCCccceEEeeee-eeeeccCCCcc
Q 037763 310 ISGICKCGRCRHTRMSFISLRR-HIACLNCNQYW 342 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrW 342 (354)
+...+.|+.||+.. +.=.-+ .-.|-.||..|
T Consensus 57 q~akytCPfCGk~~--vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 57 MNEDHACPNCGEDR--VDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp HHSCEECSSSCCEE--EEEEETTEEEETTTCCEE
T ss_pred hccCCcCCCCCCce--eEecCceeEECCCCCCEE
Confidence 34457899998642 322233 77899999764
No 81
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=31.82 E-value=18 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.697 Sum_probs=19.1
Q ss_pred cccceEeCCCCCccceEEeeeeeeeeccCC
Q 037763 310 ISGICKCGRCRHTRMSFISLRRHIACLNCN 339 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QTFv~C~~Cg 339 (354)
...+..|+.||+.+-. ...|.+||
T Consensus 27 ~p~l~~c~~cGe~~~~------H~vc~~CG 50 (60)
T 3v2d_5 27 PPTLVPCPECKAMKPP------HTVCPECG 50 (60)
T ss_dssp CCCCEECTTTCCEECT------TSCCTTTC
T ss_pred CCceeECCCCCCeecc------eEEcCCCC
Confidence 5678899999996654 56699999
No 82
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=31.63 E-value=19 Score=30.12 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=12.4
Q ss_pred ccccceEeCCCCCccceE
Q 037763 309 IISGICKCGRCRHTRMSF 326 (354)
Q Consensus 309 ~~td~f~C~kC~~~k~ty 326 (354)
+.+-.|-|.+|..-=|+=
T Consensus 8 ~s~vkllCrkC~~~~C~g 25 (133)
T 3ga3_A 8 PSLITFLCKNCSVLACSG 25 (133)
T ss_dssp GGGEEEEETTTCCEEEEG
T ss_pred cceEEEEccCCCeeEEec
Confidence 355578899998765543
No 83
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=30.30 E-value=71 Score=25.47 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=20.1
Q ss_pred ccceEeCCCCCccceEEeeee-eeeeccCCCcc
Q 037763 311 SGICKCGRCRHTRMSFISLRR-HIACLNCNQYW 342 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrW 342 (354)
-..+.|+.||+.++. -.-+ .-.|-.||..|
T Consensus 34 ~aky~CpfCgk~~vK--R~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVK--RAAVGIWKCKPCKKII 64 (103)
T ss_dssp HSCEECTTTCCEEEE--EEETTEEEETTTTEEE
T ss_pred hcCCCCCCCCCceee--ecCcceEEcCCCCCEE
Confidence 345789999877532 2223 67899998755
No 84
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=30.08 E-value=18 Score=34.57 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=17.8
Q ss_pred eEeCCCCCccc-eEEeeee-eeeeccCC
Q 037763 314 CKCGRCRHTRM-SFISLRR-HIACLNCN 339 (354)
Q Consensus 314 f~C~kC~~~k~-ty~q~QT-Fv~C~~Cg 339 (354)
..|+.||.... -++.-.+ ...|.+||
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CG 49 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCG 49 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTC
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCC
Confidence 37999998322 2233344 99999999
No 85
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=29.93 E-value=27 Score=28.54 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=21.4
Q ss_pred EeCCCCC-----ccceEEeee-----eeeeeccCCCcccccC
Q 037763 315 KCGRCRH-----TRMSFISLR-----RHIACLNCNQYWDSTN 346 (354)
Q Consensus 315 ~C~kC~~-----~k~ty~q~Q-----TFv~C~~CgnrWk~~~ 346 (354)
-|.+|+. ..|+..-.. ..++|+.||+.=+|..
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~ 103 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPY 103 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEEC
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEec
Confidence 5999976 334443211 2889999998877754
No 86
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=29.32 E-value=14 Score=35.33 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=19.5
Q ss_pred ceEeCCCCCc--cceEEeeeeeeeeccCCC
Q 037763 313 ICKCGRCRHT--RMSFISLRRHIACLNCNQ 340 (354)
Q Consensus 313 ~f~C~kC~~~--k~ty~q~QTFv~C~~Cgn 340 (354)
...|+.||.. +..+..-+-...|.+||-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCe
Confidence 3479999997 444433333889999993
No 87
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=29.07 E-value=32 Score=27.91 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=21.3
Q ss_pred EeCCCCC-----ccceEEeee-----eeeeeccCCCcccccC
Q 037763 315 KCGRCRH-----TRMSFISLR-----RHIACLNCNQYWDSTN 346 (354)
Q Consensus 315 ~C~kC~~-----~k~ty~q~Q-----TFv~C~~CgnrWk~~~ 346 (354)
-|.+|+. ..|+..-.. ..++|+.||+.=+|..
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~ 108 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPY 108 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEEC
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEcc
Confidence 5999976 334432211 2789999999877654
No 88
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=28.98 E-value=5.2 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.539 Sum_probs=22.3
Q ss_pred eEeCCCCCccceEEeeee--eeeeccCCCccccc
Q 037763 314 CKCGRCRHTRMSFISLRR--HIACLNCNQYWDST 345 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QT--Fv~C~~CgnrWk~~ 345 (354)
..|..|+...+....-.- -..|+.||-+|+--
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 369999988764322211 57899999999753
No 89
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=27.96 E-value=19 Score=36.64 Aligned_cols=13 Identities=38% Similarity=1.040 Sum_probs=10.5
Q ss_pred eeeeccCCCccccc
Q 037763 332 HIACLNCNQYWDST 345 (354)
Q Consensus 332 Fv~C~~CgnrWk~~ 345 (354)
.+.|. ||++|=.-
T Consensus 641 ~~~c~-~~~~~g~~ 653 (699)
T 4gl2_A 641 EIICK-CGQAWGTM 653 (699)
T ss_dssp EEECS-SSCEEEEE
T ss_pred cEEee-cCchhhHH
Confidence 77798 99999543
No 90
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.31 E-value=21 Score=30.05 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=22.0
Q ss_pred CcccccceEeCCCCCccceEEeeee-eeeeccCCCc
Q 037763 307 KKIISGICKCGRCRHTRMSFISLRR-HIACLNCNQY 341 (354)
Q Consensus 307 ~~~~td~f~C~kC~~~k~ty~q~QT-Fv~C~~Cgnr 341 (354)
.+..+=.|+|..||..--. .. ...|-.||+.
T Consensus 126 ~~~~~~~y~C~~Cg~~~~~----~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 126 KKVIKWRYVCIGCGRKFST----LPPGGVCPDCGSK 157 (165)
T ss_dssp SSCCCCCEEESSSCCEESS----CCGGGBCTTTCCB
T ss_pred cccccEEEECCCCCCcccC----CCCCCcCCCCCCc
Confidence 3456678999999964322 13 5689999986
No 91
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=26.20 E-value=68 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=18.6
Q ss_pred cceEeCCCCCccceEEeeee-eeeeccCCCcc
Q 037763 312 GICKCGRCRHTRMSFISLRR-HIACLNCNQYW 342 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT-Fv~C~~CgnrW 342 (354)
..+.|+.||+.++. -.-+ .-.|-.||..|
T Consensus 35 ~ky~CpfCgk~~vk--R~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 35 ARYDCSFCGKKTVK--RGAAGIWTCSCCKKTV 64 (92)
T ss_dssp SCCCCSSSCSSCCE--EEETTEEECTTTCCEE
T ss_pred cCCcCCCCCCceee--ecccceEEcCCCCCEE
Confidence 44679999876532 1223 66788888754
No 92
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.05 E-value=20 Score=32.63 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=17.4
Q ss_pred EeCCCCCccc--eEEeeee---eeeeccCCC
Q 037763 315 KCGRCRHTRM--SFISLRR---HIACLNCNQ 340 (354)
Q Consensus 315 ~C~kC~~~k~--ty~q~QT---Fv~C~~Cgn 340 (354)
.|+.|+=.=. .|..++. +++|-+||-
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgR 230 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGR 230 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCe
Confidence 7999975432 3333332 999999983
No 93
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.47 E-value=9.6 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.656 Sum_probs=23.7
Q ss_pred ccceEeCCCCCccc-eEEeeee----------eeeeccCCCccc
Q 037763 311 SGICKCGRCRHTRM-SFISLRR----------HIACLNCNQYWD 343 (354)
Q Consensus 311 td~f~C~kC~~~k~-ty~q~QT----------Fv~C~~CgnrWk 343 (354)
...|+|..|++.=. +...++. -+.|..||..+.
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccC
Confidence 35699999998765 5445543 467999997765
No 94
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=25.29 E-value=18 Score=22.41 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.8
Q ss_pred CCCcccccCCCc
Q 037763 338 CNQYWDSTNPGI 349 (354)
Q Consensus 338 CgnrWk~~~~~~ 349 (354)
|..||.||--.|
T Consensus 2 C~rrW~~C~~~i 13 (31)
T 1rmk_A 2 CSKKWEYCIVPI 13 (31)
T ss_dssp EECTTSCCCCCT
T ss_pred ccccccccccce
Confidence 789999997655
No 95
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.18 E-value=17 Score=24.93 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=21.2
Q ss_pred ccceEeCCCCCccceEEeee-e-----eeeeccCCCcccc
Q 037763 311 SGICKCGRCRHTRMSFISLR-R-----HIACLNCNQYWDS 344 (354)
Q Consensus 311 td~f~C~kC~~~k~ty~q~Q-T-----Fv~C~~CgnrWk~ 344 (354)
...|+|..|++.=.....++ + -..|..||..+.-
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 34699999997432222221 1 5679999976543
No 96
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.11 E-value=10 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=20.2
Q ss_pred cccceEeCCCCCccceEEeeee---------eeeeccCCC
Q 037763 310 ISGICKCGRCRHTRMSFISLRR---------HIACLNCNQ 340 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT---------Fv~C~~Cgn 340 (354)
..-.|+|..|++.=.+...++. -..|..||.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 4457999999876544444432 456888873
No 97
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.06 E-value=32 Score=29.21 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=21.1
Q ss_pred eEeCCCCCccceEEeeee-eeeeccCCCc
Q 037763 314 CKCGRCRHTRMSFISLRR-HIACLNCNQY 341 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~QT-Fv~C~~Cgnr 341 (354)
-.|..|+....+|--+-. .+.|++|.-.
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~Csgi 58 (149)
T 2crw_A 30 KVCFDCGAKNPSWASITYGVFLCIDCSGS 58 (149)
T ss_dssp SBCSSSCCBSCCCEETTTTEECCHHHHHH
T ss_pred CcCCCCcCCCCCcEEeccCEEEchhcchh
Confidence 379999999998876644 4459999643
No 98
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.04 E-value=12 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=23.8
Q ss_pred cccceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 310 ISGICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
....|+|..|+..=.+...++. -..|..||..+.
T Consensus 15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 3457999999987555444443 567999997654
No 99
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=24.75 E-value=1e+02 Score=23.29 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhccCChHHHHHhhHHHHHHHhCCCchhhhhhHhhHHhhcC
Q 037763 176 DCIREIVREKLYGALSKVSEEAGHDNKEIIDQVRACDPIQVAISVESAIYENWGRSTGTYKFKYRCLLFNIN 247 (354)
Q Consensus 176 d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~lA~~IE~aif~~~~~~~~~Yk~k~Rsl~~NLK 247 (354)
...|++++.-+-++++. .+ .. . -.=|.++|.++|..-. +..+|-.-+=-|+..++
T Consensus 12 ~~FRq~vi~~i~~a~~~-~G---~~---~---------~k~a~emEnhvF~Ka~-tkdEYL~lvarli~h~r 66 (77)
T 2gut_A 12 TAFRQKLVSQIEDAMRK-AG---VA---H---------SKSSKDMESHVFLKAK-TRDEYLSLVARLIIHFR 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHH-HC---CC---C---------SSCHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH-hC---CC---C---------CCCHHHHHHHHHhccC-cccchHHHHHHHHHHHH
Confidence 67999999999999986 22 11 0 1347899999997753 34578877766666554
No 100
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.57 E-value=9.5 Score=23.92 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=17.9
Q ss_pred cceEeCCCCCccceEEeeee---------eeeeccCC
Q 037763 312 GICKCGRCRHTRMSFISLRR---------HIACLNCN 339 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT---------Fv~C~~Cg 339 (354)
..|+|..|++.=.....++. -..|..||
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 46899999876544433332 45677776
No 101
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=23.93 E-value=14 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.350 Sum_probs=21.3
Q ss_pred cceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 312 GICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
..|+|..|+..=.+...++. -..|..||..+.
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEES
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhC
Confidence 45899999876444444433 467999987654
No 102
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.81 E-value=13 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=21.6
Q ss_pred cccceEeCCCCCccceEEeeee----------eeeeccCCCcc
Q 037763 310 ISGICKCGRCRHTRMSFISLRR----------HIACLNCNQYW 342 (354)
Q Consensus 310 ~td~f~C~kC~~~k~ty~q~QT----------Fv~C~~CgnrW 342 (354)
..-.|+|..|++.=.....++. -..|..||..+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F 51 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSS
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence 3456999999876444333322 46799998764
No 103
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=23.73 E-value=2.3e+02 Score=23.16 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCc----cHHHHHHHHHHhhcCCCcHHhhhccccee-eccccccCCCHHHHHHHhhhh
Q 037763 3 EKMMELYEAAKRAAMAAVWKEGGA----EEAQCLDALDQLKNCSITYQLLVSTQVAR-HLVPMLKHPCEKIQLFAIELI 76 (354)
Q Consensus 3 ~~~~~l~~~~~~~a~~~~~~~~~~----~~~~~l~~L~~L~~~~~t~~~L~~T~iG~-~v~~Lrkh~~~~I~~~Ak~Li 76 (354)
++||+.|..+-.+=+-|-...+.+ ....+..+...|+.-+ +-|. ++-.|..|+|+.|+-.|...+
T Consensus 12 ~~Lv~~F~~~~i~q~eA~~~~d~~~~Nr~~~kl~~~~~eLk~r~---------Gd~R~aLl~Ll~H~n~~VRl~AA~~~ 81 (123)
T 2i9c_A 12 QDLVALFAKVTVEQDDALLGNQISRFNRLFGVMAEIADELKARD---------GDQRTALLSLFEYPNMQVRLQAAKLT 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHST---------TCGGGGGGGGGGSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC---------CcHHHHHHHHHhCCCccHHHHHHHHH
Confidence 478999987766655552333333 3444555555555332 2244 566789999999999998877
No 104
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.71 E-value=18 Score=26.32 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=5.3
Q ss_pred ceEeCCCCCc
Q 037763 313 ICKCGRCRHT 322 (354)
Q Consensus 313 ~f~C~kC~~~ 322 (354)
.|+|..|+..
T Consensus 35 ~~~C~~C~~~ 44 (95)
T 2yt9_A 35 PYSCPVCGLR 44 (95)
T ss_dssp SEECSSSCCE
T ss_pred CCcCCCCCCc
Confidence 3555555543
No 105
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=23.43 E-value=31 Score=30.39 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=19.4
Q ss_pred cceEeCCCCCcc--ceEEeeeeeeeeccCCCc
Q 037763 312 GICKCGRCRHTR--MSFISLRRHIACLNCNQY 341 (354)
Q Consensus 312 d~f~C~kC~~~k--~ty~q~QTFv~C~~Cgnr 341 (354)
....|+.||+.. .-+..-.--..|.+||--
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 344799999953 322222228889999954
No 106
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.05 E-value=30 Score=32.82 Aligned_cols=36 Identities=22% Similarity=0.556 Sum_probs=24.4
Q ss_pred cceEeCCCCC-ccceEEeee--------e---eeeeccCCCcccccCC
Q 037763 312 GICKCGRCRH-TRMSFISLR--------R---HIACLNCNQYWDSTNP 347 (354)
Q Consensus 312 d~f~C~kC~~-~k~ty~q~Q--------T---Fv~C~~CgnrWk~~~~ 347 (354)
-..+|+.||. ++-.|+.+- . .-+|..||..+|....
T Consensus 221 ~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~ 268 (309)
T 2fiy_A 221 VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYL 268 (309)
T ss_dssp CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEET
T ss_pred cCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhh
Confidence 3457888887 445665442 1 7789999999987643
No 107
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=23.05 E-value=28 Score=22.16 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=6.3
Q ss_pred eeeeccCCCc
Q 037763 332 HIACLNCNQY 341 (354)
Q Consensus 332 Fv~C~~Cgnr 341 (354)
|+.|..|||-
T Consensus 6 fY~C~~CGni 15 (36)
T 1dxg_A 6 VYKCELCGQV 15 (36)
T ss_dssp EEECTTTCCE
T ss_pred EEEcCCCCcE
Confidence 5666666663
No 108
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=22.79 E-value=15 Score=24.83 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=20.6
Q ss_pred cceEeCCCCCccceEEeeee-----------eeeeccCCCccc
Q 037763 312 GICKCGRCRHTRMSFISLRR-----------HIACLNCNQYWD 343 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT-----------Fv~C~~CgnrWk 343 (354)
..|+|..|++.=.+...++. -..|..||..+.
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 45899999876544333322 356888887653
No 109
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.62 E-value=15 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=20.8
Q ss_pred cceEeCCCCCccceEEeeee------------eeeeccCCCccc
Q 037763 312 GICKCGRCRHTRMSFISLRR------------HIACLNCNQYWD 343 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT------------Fv~C~~CgnrWk 343 (354)
..|+|..|++.=.+...++. -+.|..||..+.
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhC
Confidence 45899999876444333332 367999987654
No 110
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.41 E-value=19 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=17.9
Q ss_pred cceEeCCCCCccceEEeeee------------eeeeccCCCcccc
Q 037763 312 GICKCGRCRHTRMSFISLRR------------HIACLNCNQYWDS 344 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT------------Fv~C~~CgnrWk~ 344 (354)
..|+|..|++.=.+...++. |..|..||..|.|
T Consensus 18 ~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f 62 (115)
T 2dmi_A 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62 (115)
T ss_dssp CSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSS
T ss_pred CCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCccccc
Confidence 35777777764333222221 4457777766644
No 111
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=22.22 E-value=23 Score=30.66 Aligned_cols=25 Identities=28% Similarity=0.761 Sum_probs=21.7
Q ss_pred EeCCCCCccceEEeeee-eeeeccCC
Q 037763 315 KCGRCRHTRMSFISLRR-HIACLNCN 339 (354)
Q Consensus 315 ~C~kC~~~k~ty~q~QT-Fv~C~~Cg 339 (354)
.|..||.+..+|-.+-. .+.|..|.
T Consensus 24 ~CaDCga~~P~WaS~nlGvflCi~CS 49 (163)
T 3sub_A 24 KCFDCGISNPDWVSVNHGIFLCINCS 49 (163)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred ccccCCCCCCCeEEecCCeeEHHhhh
Confidence 79999999999988776 66699995
No 112
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=21.97 E-value=1.6e+02 Score=22.54 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=23.5
Q ss_pred hHHHHH--HHHHHHHHHHhhhcCC-ccHHHHHHHHHHh
Q 037763 4 KMMELY--EAAKRAAMAAVWKEGG-AEEAQCLDALDQL 38 (354)
Q Consensus 4 ~~~~l~--~~~~~~a~~~~~~~~~-~~~~~~l~~L~~L 38 (354)
|++++| |+..||+..|...+++ -+.+.+-.+|-+|
T Consensus 43 eyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 43 ELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 677887 8999999988544333 3666665555444
No 113
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=21.52 E-value=1.5e+02 Score=22.40 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=23.4
Q ss_pred hHHHHH--HHHHHHHHHHhhhcCC-ccHHHHHHHHHHh
Q 037763 4 KMMELY--EAAKRAAMAAVWKEGG-AEEAQCLDALDQL 38 (354)
Q Consensus 4 ~~~~l~--~~~~~~a~~~~~~~~~-~~~~~~l~~L~~L 38 (354)
|+|++| |+..||+..|...+++ -+.+.+-.++-+|
T Consensus 39 eyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 39 ELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 678887 8999999988555444 2555555555443
No 114
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.84 E-value=18 Score=25.44 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=21.3
Q ss_pred cceEeCCCCCccceEEeeee-----------eeeeccCCCccc
Q 037763 312 GICKCGRCRHTRMSFISLRR-----------HIACLNCNQYWD 343 (354)
Q Consensus 312 d~f~C~kC~~~k~ty~q~QT-----------Fv~C~~CgnrWk 343 (354)
..|+|..|++.=.+...++. -+.|..||..+.
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 45999999876544333332 357999997653
No 115
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=20.66 E-value=19 Score=26.11 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=5.1
Q ss_pred eEeCCCCCc
Q 037763 314 CKCGRCRHT 322 (354)
Q Consensus 314 f~C~kC~~~ 322 (354)
|+|..|+..
T Consensus 4 ~~C~~C~k~ 12 (88)
T 1llm_C 4 FQCRICMRN 12 (88)
T ss_dssp EECTTTCCE
T ss_pred CcCCCCCCc
Confidence 556666543
No 116
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.37 E-value=21 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=18.9
Q ss_pred ceEeCCCCCccceEEeeee---------eeeeccCCCccc
Q 037763 313 ICKCGRCRHTRMSFISLRR---------HIACLNCNQYWD 343 (354)
Q Consensus 313 ~f~C~kC~~~k~ty~q~QT---------Fv~C~~CgnrWk 343 (354)
.|+|..|+..=.+...++. -+.|..||..+.
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 76 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEES
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhc
Confidence 4788888765444444432 456888876553
No 117
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.12 E-value=20 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.582 Sum_probs=21.3
Q ss_pred cceEeCCCCCcc-ceEEeeee--------eeeeccCCCccc
Q 037763 312 GICKCGRCRHTR-MSFISLRR--------HIACLNCNQYWD 343 (354)
Q Consensus 312 d~f~C~kC~~~k-~ty~q~QT--------Fv~C~~CgnrWk 343 (354)
..|+|..|++.= .+...++. -..|..||..+.
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCS
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeC
Confidence 358999999764 33333332 456999998765
No 118
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.09 E-value=32 Score=28.61 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=4.8
Q ss_pred ccceEeCCCC
Q 037763 311 SGICKCGRCR 320 (354)
Q Consensus 311 td~f~C~kC~ 320 (354)
...++|..||
T Consensus 68 p~~~~C~~CG 77 (139)
T 3a43_A 68 EAVFKCRNCN 77 (139)
T ss_dssp CCEEEETTTC
T ss_pred CCcEECCCCC
Confidence 3445555554
No 119
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=20.02 E-value=80 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=10.1
Q ss_pred eEeCCCCCccceEEeee
Q 037763 314 CKCGRCRHTRMSFISLR 330 (354)
Q Consensus 314 f~C~kC~~~k~ty~q~Q 330 (354)
--|..|+++.---.+-+
T Consensus 27 ~gC~~C~~~~~~~v~nk 43 (106)
T 2jox_A 27 TGCAVCSKRDFMLITNK 43 (106)
T ss_dssp CCCSSSCCSSCEEEEEE
T ss_pred hhhhhcCCCceEEEecc
Confidence 35778887774434433
Done!