BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037765
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|F Chain F, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|I Chain I, Crystal Structure Of Mitotic Checkpoint Complex
Length = 223
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 15 AVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFL 74
++ DPL W+ K LD + G ++ + L LL C F + YK+D+R+L+IW
Sbjct: 67 SLDDPLQVWIDYIKWTLDNFPQG-ETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQ 125
Query: 75 YLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLD 134
Y+ + ++F + I S+ Y+ YA + E G ++ A VYQ G KA+P
Sbjct: 126 YVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185
Query: 135 KLEEALALFIDR 146
+ ++ F R
Sbjct: 186 RFQQKYQQFTHR 197
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint
SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain
From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr5460a (Methods Development)
Length = 160
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 6 ILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKND 65
+L H ++ +DPL W + + + + K+ L LL + + F +Y ND
Sbjct: 20 MLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEY----LITLLEHLMKEFLDKKKYHND 75
Query: 66 IRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIG 125
RF+ + E + D + F + I T S LY +A LE G+ + A V Q G
Sbjct: 76 PRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 135
Query: 126 ISRKAEPLDKLEEALALFIDRLSE 149
I +AEP + L++ LF RL+E
Sbjct: 136 IQNQAEPREFLQQQYRLFQTRLTE 159
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|B Chain B, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|C Chain C, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|D Chain D, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
Length = 152
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 6 ILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKND 65
+L H ++ +DPL W + + + + K+ L LL + + F +Y ND
Sbjct: 12 MLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEY----LITLLEHLMKEFLDKKKYHND 67
Query: 66 IRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIG 125
RF+ + E + D + F + I T S LY +A LE G+ + A V Q G
Sbjct: 68 PRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127
Query: 126 ISRKAEPLDKLEEALALFIDRLSE 149
I +AEP + L++ LF RL+E
Sbjct: 128 IQNQAEPREFLQQQYRLFQTRLTE 151
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
pdb|3ESL|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
Length = 202
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 16 VHDPL------LPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFL 69
+ DPL + W+ ++ +D +SG L + C+ + Y+ND RFL
Sbjct: 26 MDDPLDLFLDYMIWISTSYIEVD-----SESGQEVLRSTMERCLIYIQDMETYRNDPRFL 80
Query: 70 KIWFLYL-----EGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQI 124
KIW Y+ + E F+ M I T SL Y+ ++ LE + +A ++ ++
Sbjct: 81 KIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140
Query: 125 GISRKAEPLDKLEEALALFIDRLSE 149
G P ++L +L+ + DRL E
Sbjct: 141 GAENNCRPYNRLLRSLSNYEDRLRE 165
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex
pdb|3SI5|B Chain B, Kinetochore-Bubr1 Kinase Complex
Length = 176
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 37 GKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICT 96
GK+S ++ LL + + +Y +D RFL +W + ++ + I
Sbjct: 49 GKES---NMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGV 105
Query: 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSER 150
+ Y +A E +R A ++Q GI +KAEPL++L+ F R+S +
Sbjct: 106 SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQ 159
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1
Length = 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 37 GKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICT 96
GK+S ++ LL + + +Y +D RFL +W + ++ + I
Sbjct: 37 GKES---NMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGV 93
Query: 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSER 150
+ Y +A E +R A ++Q GI +KAEPL++L+ F R+S +
Sbjct: 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQ 147
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 30.8 bits (68), Expect = 0.29, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 20 LLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCIN 54
L+PWL + LD WY G+ +GA LL +N
Sbjct: 617 LMPWLSKTRAVLDMWYPGQ-AGAEATAALLYGDVN 650
>pdb|4GZ8|A Chain A, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
pdb|4GZ8|B Chain B, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
Length = 667
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 27/129 (20%)
Query: 9 NHDENGAVHDPLLPWLQSAKKALD-EWYSGK--DSGATD--LYKLLSN--CINTFKHHSQ 61
+H ENG P P L +A +D E YSG D D +++ L + I T +H S+
Sbjct: 143 SHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSR 202
Query: 62 YKNDIRFL--------------KIWFLYLEGSKDYEKVFREMEEL--EICT----GHSLL 101
+ ND RF+ K++F + E + D E + +IC GH L
Sbjct: 203 WLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSL 262
Query: 102 YQWYAIFLE 110
+ FL+
Sbjct: 263 VNKWTTFLK 271
>pdb|4GZA|G Chain G, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 538
Score = 30.0 bits (66), Expect = 0.53, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 27/129 (20%)
Query: 9 NHDENGAVHDPLLPWLQSAKKALD-EWYSGK--DSGATD--LYKLLSN--CINTFKHHSQ 61
+H ENG P P L +A +D E YSG D D +++ L + I T +H S+
Sbjct: 143 SHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSR 202
Query: 62 YKNDIRFL--------------KIWFLYLEGSKDYEKVFREMEEL--EICT----GHSLL 101
+ ND RF+ K++F + E + D E + +IC GH L
Sbjct: 203 WLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSL 262
Query: 102 YQWYAIFLE 110
+ FL+
Sbjct: 263 VNKWTTFLK 271
>pdb|1Q47|A Chain A, Structure Of The Semaphorin 3a Receptor-Binding Module
pdb|1Q47|B Chain B, Structure Of The Semaphorin 3a Receptor-Binding Module
Length = 495
Score = 29.6 bits (65), Expect = 0.62, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 27/129 (20%)
Query: 9 NHDENGAVHDPLLPWLQSAKKALD-EWYSGK--DSGATD--LYKLLSN--CINTFKHHSQ 61
+H ENG P P L +A +D E YSG D D +++ L + I T +H S+
Sbjct: 135 SHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSR 194
Query: 62 YKNDIRFL--------------KIWFLYLEGSKDYEKVFREMEEL--EICT----GHSLL 101
+ ND RF+ K++F + E + D E + +IC GH L
Sbjct: 195 WLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSL 254
Query: 102 YQWYAIFLE 110
+ FL+
Sbjct: 255 VNKWTTFLK 263
>pdb|2ZG6|A Chain A, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
pdb|2ZG6|B Chain B, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
Length = 220
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 73 FLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLE 110
FLY+ G E++ +E++E +I G + LY FLE
Sbjct: 68 FLYILGIYPSERLVKELKEADIRDGEAFLYDDTLEFLE 105
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 26.6 bits (57), Expect = 6.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 487 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 527
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 487 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 527
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 487 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 527
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 487 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 527
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 456 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 496
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYS--GKDSGATDL 45
L N +GA HD L W++S + Y G D+ ATD+
Sbjct: 458 LGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDI 498
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 21 LPWLQSAKKALDEWYSGKDSG 41
PWL+ A + WY G + G
Sbjct: 629 FPWLEDANALVQAWYGGNELG 649
>pdb|3EZZ|A Chain A, Crystal Structure Of Human Mkp-2
pdb|3EZZ|B Chain B, Crystal Structure Of Human Mkp-2
pdb|3EZZ|C Chain C, Crystal Structure Of Human Mkp-2
pdb|3EZZ|D Chain D, Crystal Structure Of Human Mkp-2
pdb|3EZZ|E Chain E, Crystal Structure Of Human Mkp-2
pdb|3EZZ|F Chain F, Crystal Structure Of Human Mkp-2
Length = 144
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 41 GATDLYKLLSNCINTFKHHSQYK------NDIRFLKIWFL----YLEGSKD 81
G T L + S+C N F+ H QYK N + WF+ Y++ KD
Sbjct: 29 GITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVKD 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,978,790
Number of Sequences: 62578
Number of extensions: 199958
Number of successful extensions: 555
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 32
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)