Query 037765
Match_columns 153
No_of_seqs 105 out of 256
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00777 Mad3_BUB1_I Mad3/BU 100.0 2.6E-53 5.6E-58 318.0 11.9 120 4-125 5-125 (125)
2 PF08311 Mad3_BUB1_I: Mad3/BUB 100.0 1.7E-49 3.7E-54 296.8 11.7 121 4-126 5-126 (126)
3 KOG1166 Mitotic checkpoint ser 100.0 1.3E-33 2.8E-38 265.2 12.1 145 5-150 19-165 (974)
4 PF15297 CKAP2_C: Cytoskeleton 97.3 0.0025 5.5E-08 55.3 9.8 74 72-145 109-186 (353)
5 KOG1915 Cell cycle control pro 96.7 0.024 5.2E-07 51.7 11.1 123 17-148 317-451 (677)
6 PF05843 Suf: Suppressor of fo 96.1 0.09 2E-06 43.7 10.7 110 22-148 3-121 (280)
7 KOG1915 Cell cycle control pro 96.1 0.078 1.7E-06 48.5 10.8 121 7-148 62-188 (677)
8 KOG2047 mRNA splicing factor [ 95.9 0.046 1E-06 51.3 8.8 90 60-149 193-300 (835)
9 KOG1914 mRNA cleavage and poly 94.8 0.095 2E-06 48.4 6.8 119 20-149 237-381 (656)
10 PF02631 RecX: RecX family; I 94.0 0.85 1.8E-05 33.0 9.4 93 47-146 9-104 (121)
11 PF05843 Suf: Suppressor of fo 93.8 0.28 6E-06 40.8 7.3 106 7-128 24-136 (280)
12 KOG2047 mRNA splicing factor [ 92.9 0.24 5.3E-06 46.6 5.9 118 7-132 410-544 (835)
13 KOG1258 mRNA processing protei 92.4 2.4 5.2E-05 39.3 11.5 108 7-129 278-396 (577)
14 COG5107 RNA14 Pre-mRNA 3'-end 91.8 0.84 1.8E-05 41.8 7.8 97 45-151 95-213 (660)
15 KOG1070 rRNA processing protei 91.5 1.8 4E-05 44.0 10.3 109 7-129 1481-1594(1710)
16 PF07719 TPR_2: Tetratricopept 90.9 0.83 1.8E-05 24.9 4.6 31 99-129 1-31 (34)
17 PRK14136 recX recombination re 90.5 4.1 8.9E-05 35.1 10.4 94 47-146 194-287 (309)
18 KOG1914 mRNA cleavage and poly 90.4 2.9 6.3E-05 38.9 9.9 95 45-149 72-187 (656)
19 cd02681 MIT_calpain7_1 MIT: do 90.2 2.4 5.2E-05 29.1 7.2 53 97-149 4-66 (76)
20 PF13428 TPR_14: Tetratricopep 90.0 0.75 1.6E-05 27.4 4.1 32 101-132 3-34 (44)
21 cd02682 MIT_AAA_Arch MIT: doma 89.9 2.2 4.8E-05 29.3 6.8 52 97-148 4-64 (75)
22 smart00745 MIT Microtubule Int 89.7 3.1 6.8E-05 27.6 7.4 53 97-149 6-67 (77)
23 PF13181 TPR_8: Tetratricopept 89.6 1.2 2.5E-05 24.4 4.5 30 99-128 1-30 (34)
24 PF13429 TPR_15: Tetratricopep 89.2 1.4 3E-05 35.7 6.4 68 64-131 108-178 (280)
25 PF12895 Apc3: Anaphase-promot 88.7 3.1 6.8E-05 27.5 6.9 72 46-124 9-83 (84)
26 PRK14134 recX recombination re 88.1 5.8 0.00013 33.4 9.6 96 47-146 93-191 (283)
27 cd02683 MIT_1 MIT: domain cont 87.8 3.3 7.2E-05 28.2 6.6 54 96-149 3-65 (77)
28 PF04212 MIT: MIT (microtubule 87.6 4.4 9.4E-05 26.4 6.9 54 97-150 3-65 (69)
29 KOG1070 rRNA processing protei 86.7 7.2 0.00016 40.0 10.5 112 21-146 1459-1576(1710)
30 cd02656 MIT MIT: domain contai 86.4 6.8 0.00015 25.9 7.4 53 97-149 4-65 (75)
31 smart00028 TPR Tetratricopepti 86.3 1.6 3.5E-05 21.5 3.5 29 101-129 3-31 (34)
32 KOG0495 HAT repeat protein [RN 86.0 4.9 0.00011 38.4 8.5 93 21-132 652-752 (913)
33 PF13176 TPR_7: Tetratricopept 85.5 0.78 1.7E-05 26.3 2.1 25 102-126 2-26 (36)
34 PRK00117 recX recombination re 85.0 14 0.00031 27.7 10.1 94 47-146 43-138 (157)
35 PF13414 TPR_11: TPR repeat; P 83.8 2.2 4.9E-05 26.8 4.0 32 98-129 2-33 (69)
36 PF08424 NRDE-2: NRDE-2, neces 82.9 19 0.00041 30.5 10.3 106 7-129 54-184 (321)
37 PRK14135 recX recombination re 82.8 17 0.00038 29.6 9.8 54 46-100 88-143 (263)
38 PF13432 TPR_16: Tetratricopep 82.5 5.8 0.00013 24.7 5.5 49 79-129 13-61 (65)
39 cd02678 MIT_VPS4 MIT: domain c 82.3 8.2 0.00018 25.8 6.5 52 98-149 5-65 (75)
40 PF00515 TPR_1: Tetratricopept 80.9 5.9 0.00013 21.6 4.6 31 99-129 1-31 (34)
41 smart00386 HAT HAT (Half-A-TPR 80.5 3.7 8E-05 21.6 3.5 31 113-144 1-31 (33)
42 cd02684 MIT_2 MIT: domain cont 80.5 9.5 0.00021 25.8 6.3 51 99-149 6-65 (75)
43 PF13374 TPR_10: Tetratricopep 76.4 9.1 0.0002 21.2 4.6 29 99-127 2-30 (42)
44 PRK14137 recX recombination re 75.4 36 0.00077 27.2 9.2 93 47-146 72-164 (195)
45 PF13424 TPR_12: Tetratricopep 75.0 9.1 0.0002 24.6 4.8 32 97-128 3-34 (78)
46 PF13371 TPR_9: Tetratricopept 74.0 12 0.00026 23.5 5.2 53 82-136 14-66 (73)
47 PF13424 TPR_12: Tetratricopep 73.3 8.1 0.00017 24.9 4.2 31 97-127 44-74 (78)
48 cd02677 MIT_SNX15 MIT: domain 72.8 11 0.00023 25.7 4.8 47 103-149 10-65 (75)
49 cd02680 MIT_calpain7_2 MIT: do 72.7 20 0.00044 24.5 6.2 49 98-146 5-58 (75)
50 cd00189 TPR Tetratricopeptide 70.6 20 0.00044 21.4 6.7 48 80-129 51-98 (100)
51 PF05596 Taeniidae_ag: Taeniid 67.9 15 0.00032 24.6 4.5 46 83-128 17-63 (64)
52 TIGR02795 tol_pal_ybgF tol-pal 67.7 34 0.00073 22.9 8.7 88 44-132 20-109 (119)
53 KOG1840 Kinesin light chain [C 67.6 39 0.00084 31.0 8.6 56 83-140 352-419 (508)
54 PF14559 TPR_19: Tetratricopep 65.7 8.7 0.00019 23.9 3.1 49 81-131 9-57 (68)
55 KOG1166 Mitotic checkpoint ser 64.1 34 0.00074 33.9 8.0 106 6-133 2-112 (974)
56 PF13414 TPR_11: TPR repeat; P 63.2 30 0.00066 21.4 5.3 45 82-128 22-67 (69)
57 PRK02603 photosystem I assembl 62.6 26 0.00056 26.3 5.7 79 53-131 23-104 (172)
58 PRK15179 Vi polysaccharide bio 61.7 1.1E+02 0.0023 29.2 10.6 58 78-137 169-226 (694)
59 KOG2396 HAT (Half-A-TPR) repea 61.3 47 0.001 30.9 7.8 123 3-140 36-180 (568)
60 PF09976 TPR_21: Tetratricopep 60.7 62 0.0013 23.5 8.4 79 45-124 30-110 (145)
61 PF13429 TPR_15: Tetratricopep 57.8 45 0.00097 26.8 6.6 39 98-136 213-252 (280)
62 KOG1258 mRNA processing protei 57.6 1.7E+02 0.0037 27.5 11.5 97 41-149 94-198 (577)
63 COG2956 Predicted N-acetylgluc 57.2 20 0.00043 31.6 4.6 42 90-131 171-212 (389)
64 PRK15363 pathogenicity island 57.0 33 0.00072 26.7 5.4 48 80-129 86-133 (157)
65 KOG2076 RNA polymerase III tra 56.4 54 0.0012 32.2 7.7 111 16-150 679-796 (895)
66 PF13174 TPR_6: Tetratricopept 56.1 23 0.0005 18.6 3.3 28 99-128 2-29 (33)
67 PF13432 TPR_16: Tetratricopep 55.2 20 0.00043 22.1 3.3 26 104-129 2-27 (65)
68 PRK11189 lipoprotein NlpI; Pro 54.9 1.2E+02 0.0026 25.0 9.7 50 94-145 231-280 (296)
69 TIGR00756 PPR pentatricopeptid 54.8 30 0.00065 18.0 4.5 27 106-132 7-33 (35)
70 TIGR02552 LcrH_SycD type III s 54.2 39 0.00084 23.6 5.1 50 79-130 67-116 (135)
71 cd02679 MIT_spastin MIT: domai 53.2 33 0.00071 23.7 4.3 32 96-127 5-36 (79)
72 PRK14720 transcript cleavage f 52.9 84 0.0018 31.0 8.5 80 46-128 169-252 (906)
73 TIGR00540 hemY_coli hemY prote 52.9 1.1E+02 0.0023 26.4 8.6 78 43-127 316-398 (409)
74 PF12688 TPR_5: Tetratrico pep 52.1 92 0.002 22.8 7.2 47 82-128 20-67 (120)
75 PF13812 PPR_3: Pentatricopept 48.4 41 0.00089 17.7 4.4 31 102-132 4-34 (34)
76 PF13041 PPR_2: PPR repeat fam 48.2 55 0.0012 19.3 4.4 34 102-135 6-39 (50)
77 KOG0890 Protein kinase of the 47.9 33 0.00072 37.0 5.1 62 65-127 1666-1730(2382)
78 PRK10803 tol-pal system protei 47.7 1.6E+02 0.0035 24.3 8.9 88 44-132 161-250 (263)
79 COG2137 OraA Uncharacterized p 46.0 63 0.0014 25.5 5.5 91 48-145 53-148 (174)
80 smart00299 CLH Clathrin heavy 45.5 1.1E+02 0.0024 21.8 6.8 77 42-125 23-108 (140)
81 PRK11788 tetratricopeptide rep 44.4 1.2E+02 0.0026 25.0 7.3 30 99-128 180-209 (389)
82 TIGR02552 LcrH_SycD type III s 43.1 1.1E+02 0.0024 21.2 8.9 52 79-132 33-84 (135)
83 PRK11788 tetratricopeptide rep 42.8 1.9E+02 0.0042 23.8 8.8 27 101-127 109-135 (389)
84 TIGR00990 3a0801s09 mitochondr 42.6 2.6E+02 0.0057 25.4 10.9 47 81-129 526-572 (615)
85 PF12854 PPR_1: PPR repeat 42.0 58 0.0012 18.2 3.6 24 101-124 9-32 (34)
86 PRK09857 putative transposase; 42.0 1.7E+02 0.0037 24.6 7.9 84 44-132 187-273 (292)
87 KOG2076 RNA polymerase III tra 41.5 1.2E+02 0.0026 30.0 7.4 89 45-138 139-246 (895)
88 PRK15331 chaperone protein Sic 40.8 60 0.0013 25.5 4.6 46 81-128 89-134 (165)
89 PHA02602 56 dCTP pyrophosphata 40.8 93 0.002 24.7 5.6 37 114-150 13-49 (172)
90 PF02184 HAT: HAT (Half-A-TPR) 40.4 53 0.0011 19.0 3.2 30 114-145 2-31 (32)
91 PF04733 Coatomer_E: Coatomer 40.3 1.8E+02 0.004 24.3 7.8 86 47-137 148-239 (290)
92 PRK02603 photosystem I assembl 39.9 1.6E+02 0.0034 22.0 7.8 45 81-127 90-134 (172)
93 KOG3617 WD40 and TPR repeat-co 39.6 39 0.00085 33.6 4.0 28 100-127 913-940 (1416)
94 PLN03218 maturation of RBCL 1; 38.3 2.3E+02 0.005 28.4 9.2 53 80-133 631-683 (1060)
95 PF02330 MAM33: Mitochondrial 38.1 54 0.0012 25.8 4.1 30 83-112 162-191 (204)
96 PLN03218 maturation of RBCL 1; 37.9 1.4E+02 0.003 29.9 7.6 74 60-133 365-471 (1060)
97 PF12895 Apc3: Anaphase-promot 37.7 60 0.0013 21.1 3.7 44 81-124 7-50 (84)
98 PF14938 SNAP: Soluble NSF att 37.1 64 0.0014 26.4 4.5 41 87-127 102-143 (282)
99 KOG0495 HAT repeat protein [RN 37.0 88 0.0019 30.4 5.7 69 70-138 652-726 (913)
100 TIGR02917 PEP_TPR_lipo putativ 35.1 1.7E+02 0.0036 26.3 7.1 82 43-130 787-868 (899)
101 PRK10747 putative protoheme IX 35.0 56 0.0012 28.2 4.0 47 80-129 345-391 (398)
102 CHL00033 ycf3 photosystem I as 34.9 1.5E+02 0.0033 21.8 5.9 55 80-134 52-107 (168)
103 PF07064 RIC1: RIC1; InterPro 33.3 2.8E+02 0.0061 23.0 9.9 74 45-129 156-234 (258)
104 PF10366 Vps39_1: Vacuolar sor 32.8 1.1E+02 0.0024 21.9 4.6 40 81-127 28-67 (108)
105 PRK15179 Vi polysaccharide bio 32.7 1.3E+02 0.0028 28.7 6.2 70 66-137 117-192 (694)
106 PF07721 TPR_4: Tetratricopept 32.5 80 0.0017 16.4 3.2 22 102-123 4-25 (26)
107 PF00762 Ferrochelatase: Ferro 32.4 72 0.0016 27.2 4.2 45 33-77 122-172 (316)
108 PF10602 RPN7: 26S proteasome 32.0 1.3E+02 0.0029 23.2 5.4 49 91-139 28-76 (177)
109 PF13431 TPR_17: Tetratricopep 31.9 54 0.0012 18.3 2.4 22 98-119 12-33 (34)
110 KOG3657 Mitochondrial DNA poly 31.1 24 0.00051 34.7 1.1 45 22-67 409-453 (1075)
111 PLN03081 pentatricopeptide (PP 31.1 3.3E+02 0.0072 25.2 8.6 81 50-132 276-358 (697)
112 PF09005 DUF1897: Domain of un 31.1 35 0.00077 20.6 1.5 25 99-123 9-33 (38)
113 TIGR02917 PEP_TPR_lipo putativ 30.0 4.1E+02 0.0088 23.8 8.9 51 80-132 686-736 (899)
114 PF01535 PPR: PPR repeat; Int 28.5 90 0.002 15.8 3.0 21 106-126 7-27 (31)
115 COG5107 RNA14 Pre-mRNA 3'-end 27.7 2.9E+02 0.0063 25.9 7.3 95 23-127 264-368 (660)
116 PHA01810 hypothetical protein 27.5 28 0.0006 24.4 0.7 12 15-26 77-88 (100)
117 PRK15359 type III secretion sy 27.1 2.5E+02 0.0054 20.4 10.3 64 65-130 54-123 (144)
118 TIGR02795 tol_pal_ybgF tol-pal 27.0 1.9E+02 0.0041 19.0 7.0 51 81-131 20-71 (119)
119 PRK15359 type III secretion sy 26.2 2.6E+02 0.0057 20.4 8.3 52 79-132 40-91 (144)
120 smart00096 UTG Uteroglobin. 26.0 56 0.0012 22.1 1.9 51 1-54 15-65 (69)
121 PF04911 ATP-synt_J: ATP synth 25.7 25 0.00055 22.8 0.2 19 49-67 24-42 (54)
122 PF11817 Foie-gras_1: Foie gra 24.3 3.3E+02 0.0072 21.9 6.6 54 40-126 152-205 (247)
123 COG0276 HemH Protoheme ferro-l 24.2 1.1E+02 0.0024 26.5 3.9 44 34-77 125-174 (320)
124 KOG0739 AAA+-type ATPase [Post 23.9 3.1E+02 0.0068 24.4 6.5 54 96-149 7-70 (439)
125 PLN03081 pentatricopeptide (PP 23.6 1.2E+02 0.0026 28.0 4.3 12 82-93 344-355 (697)
126 PF07720 TPR_3: Tetratricopept 23.3 1.6E+02 0.0035 16.9 4.1 23 101-123 3-25 (36)
127 smart00229 RasGEFN Guanine nuc 23.1 1.4E+02 0.003 21.1 3.8 48 43-95 8-55 (127)
128 PF08717 nsp8: nsp8 replicase; 23.1 1.3E+02 0.0029 24.3 3.9 26 114-140 14-39 (199)
129 PF12663 DUF3788: Protein of u 22.9 44 0.00095 25.0 1.1 24 11-35 11-34 (133)
130 PF12569 NARP1: NMDA receptor- 22.8 2.7E+02 0.0058 25.6 6.3 53 79-131 17-70 (517)
131 PF06855 DUF1250: Protein of u 22.4 71 0.0015 19.5 1.8 25 102-126 18-42 (46)
132 PF04910 Tcf25: Transcriptiona 22.2 3.4E+02 0.0074 23.5 6.6 61 62-127 4-68 (360)
133 COG5381 Uncharacterized protei 22.1 38 0.00083 26.7 0.6 48 2-51 106-153 (184)
134 PF11846 DUF3366: Domain of un 21.9 1.8E+02 0.0039 22.2 4.4 31 98-128 143-173 (193)
135 KOG0871 Class 2 transcription 21.5 4E+02 0.0087 20.8 10.6 96 49-149 18-132 (156)
136 cd06224 REM Guanine nucleotide 20.5 2.5E+02 0.0053 19.4 4.6 41 46-91 3-43 (122)
137 COG5191 Uncharacterized conser 20.1 68 0.0015 28.5 1.8 120 2-135 35-179 (435)
No 1
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=100.00 E-value=2.6e-53 Score=317.95 Aligned_cols=120 Identities=31% Similarity=0.548 Sum_probs=116.1
Q ss_pred cccccccc-ccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCH
Q 037765 4 AVILPNHD-ENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDY 82 (153)
Q Consensus 4 ~~~~e~~i-~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~ 82 (153)
.++||.+| +.++|||||++|++||+|++++||+| +++|+|.+||||||++|+++++||||+|||||||+||++|+||
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g--~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp 82 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQG--GKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEP 82 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCC--CchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCH
Confidence 46799999 88999999999999999999999987 4679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIG 125 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~G 125 (153)
.+||+||+++|||+++|+||++||.++|.+|++++|++||++|
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998
No 2
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=100.00 E-value=1.7e-49 Score=296.83 Aligned_cols=121 Identities=36% Similarity=0.603 Sum_probs=113.9
Q ss_pred ccccccccccCC-CCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCH
Q 037765 4 AVILPNHDENGA-VHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDY 82 (153)
Q Consensus 4 ~~~~e~~i~~~~-~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~ 82 (153)
.++||.+|++++ |||||++|++||+|+++++|++ +.+++|.++|||||++|+++++|+||+|||+|||+||+++++|
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~--~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~ 82 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSG--GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDP 82 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTC--CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHH
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCC--CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCH
Confidence 357999999999 9999999999999999999983 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
.+||+||+++|||+++|+||++||.++|+.|++++|++||++||
T Consensus 83 ~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 83 REIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999998
No 3
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-33 Score=265.20 Aligned_cols=145 Identities=34% Similarity=0.523 Sum_probs=139.5
Q ss_pred cccccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHH--HhcccCCH
Q 037765 5 VILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFL--YLEGSKDY 82 (153)
Q Consensus 5 ~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~--Ya~~~~d~ 82 (153)
++++..+++|.++|||++|.+||+|+.++||+|+. ..+++..+||+|+..+.+.++|+||+||+++|+. .++.+.|+
T Consensus 19 q~li~el~~~~~~DPl~~w~ryi~wv~~~~~~~~~-~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e~~~d~ 97 (974)
T KOG1166|consen 19 QRLIYELESYAGNDPLDKWLRYIEWVLEVYPEGKE-NQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELREELQDA 97 (974)
T ss_pred HHHHHHHHhhcCCCchhhhHhHhhhhhhccccCCc-hhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHHHHHhhH
Confidence 56788899999999999999999999999999865 4789999999999999999999999999999995 78899999
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSER 150 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~~ 150 (153)
.++|.||+++|||+.+|+||++||.++|.++.+++|.+||+.||+++|+|.++|++++..|++|++++
T Consensus 98 ~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 98 EDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 4
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=97.26 E-value=0.0025 Score=55.31 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHhcccCCHHHHHHHHH----hCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 037765 72 WFLYLEGSKDYEKVFREME----ELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFID 145 (153)
Q Consensus 72 Wi~Ya~~~~d~~~if~~L~----~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~ 145 (153)
||+.++-=--+.+|+.-|- +-=-..+||-||+.+|.+++..|.++....||..+|..+|+|++.|+....++..
T Consensus 109 Cl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 109 CLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4444443222446665555 2223578999999999999999999999999999999999999999999999876
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.024 Score=51.73 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=92.0
Q ss_pred CCCc--HHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc-------cCCHHHHHH
Q 037765 17 HDPL--LPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG-------SKDYEKVFR 87 (153)
Q Consensus 17 dDPL--~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~-------~~d~~~if~ 87 (153)
++|+ |.|.+|++-.+.. | ....+.++.||+|-.---...=+-=-||+=+||.||=+ +.-.++||+
T Consensus 317 ~np~nYDsWfdylrL~e~~---g---~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESV---G---DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred hCCCCchHHHHHHHHHHhc---C---CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4554 7899999975432 2 34568899999987644333333346999999999854 234579998
Q ss_pred HHHhCCcchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 037765 88 EMEELEICTG---HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLS 148 (153)
Q Consensus 88 ~L~~~~IG~~---~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~ 148 (153)
-... =|-++ +|..|.=+|.+.-.+.+...|.+|+-.+|-.+ |.++|=+.|-+++-.+.
T Consensus 391 ~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 391 ACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHHHHHHHHHHh
Confidence 8877 55554 78899999999999999999999987777655 88888888888776554
No 6
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.11 E-value=0.09 Score=43.67 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc----cCC---HHHHHHHHHhCCc
Q 037765 22 PWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG----SKD---YEKVFREMEELEI 94 (153)
Q Consensus 22 ~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~----~~d---~~~if~~L~~~~I 94 (153)
+|+.|++++..+- +....-.+.++|. . ..+- --.||+.||.+ ..| +..||+-...+
T Consensus 3 v~i~~m~~~~r~~------g~~~aR~vF~~a~-~---~~~~-----~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTE------GIEAARKVFKRAR-K---DKRC-----TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-- 65 (280)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHH-C---CCCS------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhC------ChHHHHHHHHHHH-c---CCCC-----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--
Confidence 6999999887662 2345677788875 2 1111 12678898875 345 56899887753
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-Cc-HHHHHHHHHHHHHHHH
Q 037765 95 CTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA-EP-LDKLEEALALFIDRLS 148 (153)
Q Consensus 95 G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A-~P-~~~L~~~~~~F~~R~~ 148 (153)
...-..|+..|..+|...++...|..||++++..-. .+ ...|-+++.+|+.+..
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 444578899999999999999999999999998732 22 3458888888887754
No 7
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.078 Score=48.48 Aligned_cols=121 Identities=16% Similarity=0.255 Sum_probs=87.9
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cC
Q 037765 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SK 80 (153)
Q Consensus 7 ~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~ 80 (153)
||.+|.--.. -+..|.+|-+|-+++ ++ -.---++.||++. +|-|++-+||+||++ ++
T Consensus 62 fEd~irrnR~--~~~~WikYaqwEesq----~e--~~RARSv~ERALd---------vd~r~itLWlkYae~Emknk~vN 124 (677)
T KOG1915|consen 62 FEDQIRRNRL--NMQVWIKYAQWEESQ----KE--IQRARSVFERALD---------VDYRNITLWLKYAEFEMKNKQVN 124 (677)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhH----HH--HHHHHHHHHHHHh---------cccccchHHHHHHHHHHhhhhHh
Confidence 4555544333 267999999995432 11 1234667888874 578899999999985 56
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLS 148 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~ 148 (153)
.++.|+.--. .|--++--||-.|...-|+.||...|.+||.+=+.- +|-+.--..|-.|+.|..
T Consensus 125 hARNv~dRAv--t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 125 HARNVWDRAV--TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHHHHHH--HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhh
Confidence 7888885433 244567789999999999999999999999998875 566666677778877754
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.94 E-value=0.046 Score=51.29 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=72.9
Q ss_pred ccccccHHHH--------HHHHHHhccc-CCHHHHH----HHHHhCCcch---HHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037765 60 SQYKNDIRFL--------KIWFLYLEGS-KDYEKVF----REMEELEICT---GHSLLYQWYAIFLELNGKWRDAHMVYQ 123 (153)
Q Consensus 60 ~~Y~nD~RyL--------kiWi~Ya~~~-~d~~~if----~~L~~~~IG~---~~AlfYe~wA~~lE~~~~~~~A~~I~~ 123 (153)
+.+-||++++ ++|...-++. ++|..++ .-..+.|||. ++..+|...|.++...|.+++|..||.
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5688999988 5899988863 4564443 2344677774 688899999999999999999999999
Q ss_pred HHHhC--CCCcHHHHHHHHHHHHHHHHH
Q 037765 124 IGISR--KAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 124 ~Gi~~--~A~P~~~L~~~~~~F~~R~~~ 149 (153)
.||+. ..+-...+=..|.+|+.++..
T Consensus 273 eai~~v~tvrDFt~ifd~Ya~FEE~~~~ 300 (835)
T KOG2047|consen 273 EAIQTVMTVRDFTQIFDAYAQFEESCVA 300 (835)
T ss_pred HHHHhheehhhHHHHHHHHHHHHHHHHH
Confidence 99994 577888999999999988765
No 9
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.77 E-value=0.095 Score=48.36 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHHhcCC---CCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccC----------------
Q 037765 20 LLPWLQSAKKALDEWYS---GKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSK---------------- 80 (153)
Q Consensus 20 L~~w~~yI~w~~e~~p~---g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~---------------- 80 (153)
++.|.++|+|=.++ |- ++.-.++-+.=+.|.|+..+.-.+ .||..|+.+..
T Consensus 237 v~~W~n~I~wEksN-pL~t~~~~~~~~Rv~yayeQ~ll~l~~~p---------eiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 237 VELWKNWIKWEKSN-PLRTLDGTMLTRRVMYAYEQCLLYLGYHP---------EIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred HHHHHHHHHHHhcC-CcccccccHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHhhHHHHHhcccccch
Confidence 47899999995444 64 233334556667899999986655 68888876522
Q ss_pred ----CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 037765 81 ----DYEKVFREMEELEICTGHSLLYQWYAIFLELNGK---WRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 81 ----d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~---~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
+...+|+-...---+ ..+++|-++|.+-|..-+ ++.-..+|++-+.....-...+--.|..|.+|.+.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~-~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLK-ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG 381 (656)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh
Confidence 234566554443333 377888889998888777 88888999988888888888888889999888653
No 10
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=94.05 E-value=0.85 Score=33.05 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhc--ccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLE--GSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQI 124 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~--~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~ 124 (153)
+.++.++..+.+ ..|-||.||.+-|+...- ...-|..|-.-|..+||-..+.. ..++.....+.|.++.++
T Consensus 9 e~I~~vi~~l~~-~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i~------~~l~~~~~~e~a~~~~~k 81 (121)
T PF02631_consen 9 EAIEEVIDRLKE-LGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREIIE------EALEEYDEEEEALELAEK 81 (121)
T ss_dssp HHHHHHHHHHHH-TTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHHH------HHHTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHHH------HHHHHhhHHHHHHHHHHH
Confidence 345555555533 459999999999999766 35569999999999999988654 333333334447777766
Q ss_pred HHhCC-CCcHHHHHHHHHHHHHH
Q 037765 125 GISRK-AEPLDKLEEALALFIDR 146 (153)
Q Consensus 125 Gi~~~-A~P~~~L~~~~~~F~~R 146 (153)
-.... ..|-....++...|..|
T Consensus 82 k~~~~~~~~~~~~~~K~~~~L~r 104 (121)
T PF02631_consen 82 KYRRYRKPSDRKRKQKLIRFLMR 104 (121)
T ss_dssp HHHHTTTS-CHHHHHHHHHHHHH
T ss_pred HHhcccCCCCHHHHHHHHHHHHH
Confidence 66655 35567777777777655
No 11
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.84 E-value=0.28 Score=40.76 Aligned_cols=106 Identities=12% Similarity=0.171 Sum_probs=72.5
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cC
Q 037765 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SK 80 (153)
Q Consensus 7 ~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~ 80 (153)
|+.+.. ...-.-++|..|-.+ | |-.+++ ...=..++|+.++.|.++. .+|+.|+++ .+
T Consensus 24 F~~a~~--~~~~~~~vy~~~A~~-E--~~~~~d--~~~A~~Ife~glk~f~~~~---------~~~~~Y~~~l~~~~d~~ 87 (280)
T PF05843_consen 24 FKRARK--DKRCTYHVYVAYALM-E--YYCNKD--PKRARKIFERGLKKFPSDP---------DFWLEYLDFLIKLNDIN 87 (280)
T ss_dssp HHHHHC--CCCS-THHHHHHHHH-H--HHTCS---HHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHTT-HH
T ss_pred HHHHHc--CCCCCHHHHHHHHHH-H--HHhCCC--HHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHhCcHH
Confidence 666652 222234666666543 2 222322 2335889999999976654 569999886 23
Q ss_pred CHHHHHHHHHhCCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 81 DYEKVFREMEELEICTG-HSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
+.+.+|+-..++=-... .-.+|..|..+-...|+...+.+|+++-.+.
T Consensus 88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 88 NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999888733334 5789999999999999999999999887774
No 12
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.87 E-value=0.24 Score=46.64 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=82.2
Q ss_pred ccccccc-C-CCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccC--cccccc-------HHHHHHHHHH
Q 037765 7 LPNHDEN-G-AVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHH--SQYKND-------IRFLKIWFLY 75 (153)
Q Consensus 7 ~e~~i~~-~-~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~--~~Y~nD-------~RyLkiWi~Y 75 (153)
||.+... | +.+|=-.+|+.|- +-..- +..-..-+.+|++++---.+. +.|.|. -|=||||-.|
T Consensus 410 feka~~V~y~~v~dLa~vw~~wa---emElr---h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWA---EMELR---HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHH---HHHHh---hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 6666554 3 3555555666544 32221 112234577888888665542 345554 3679999999
Q ss_pred hcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 76 LEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 76 a~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
||+ ....+.+|.-+...+|.|.- .=+.||.+||...-|.+|-++|.+||.-=-=|
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 997 33568999999999998853 45789999999999999999999999854444
No 13
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.37 E-value=2.4 Score=39.33 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=76.0
Q ss_pred cccccccC-CCCCCc-----HHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccC
Q 037765 7 LPNHDENG-AVHDPL-----LPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSK 80 (153)
Q Consensus 7 ~e~~i~~~-~~dDPL-----~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~ 80 (153)
||..|..+ ..-+|| ..|..|....+ +. | .-+.+.-+.|||+... .+|..+|++|+....
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i-~~--g---~~~~~~~l~ercli~c---------A~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI-TL--G---DFSRVFILFERCLIPC---------ALYDEFWIKYARWME 342 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhh-hc--c---cHHHHHHHHHHHHhHH---------hhhHHHHHHHHHHHH
Confidence 78888874 355554 46888887644 32 3 4567899999999987 579999999998643
Q ss_pred CH--HHH--HHHHHhCCcchHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 81 DY--EKV--FREMEELEICTGHS-LLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 81 d~--~~i--f~~L~~~~IG~~~A-lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.. .++ ........|-.+.+ ..-.-||.+-|..|++..|..+|+.=++..
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 21 122 22344455555433 234557888999999999999999988877
No 14
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.82 E-value=0.84 Score=41.78 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhccc---C-----CH----HHHHHHHHhC-CcchHHHHHHHHHHHHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS---K-----DY----EKVFREMEEL-EICTGHSLLYQWYAIFLEL 111 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~---~-----d~----~~if~~L~~~-~IG~~~AlfYe~wA~~lE~ 111 (153)
+-.|+-||+.+-.+ |.+|..|.+++ + .. .+.|+|.... +.-.++..||-+|..++|.
T Consensus 95 vE~lf~rCL~k~l~----------ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 95 VESLFGRCLKKSLN----------LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred HHHHHHHHHhhhcc----------HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 44566677766443 78999988762 2 22 4788888772 2223688999999999875
Q ss_pred ---------cCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhh
Q 037765 112 ---------NGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERL 151 (153)
Q Consensus 112 ---------~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~ 151 (153)
+.+.+.-..+|+++|+.--.-+++|-+.|.+|+.-+-..|
T Consensus 165 ~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~T 213 (660)
T COG5107 165 IEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKIT 213 (660)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHH
Confidence 4456777889999999988899999999999987665433
No 15
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.49 E-value=1.8 Score=44.02 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=82.2
Q ss_pred cccccccC---CCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc--cCC
Q 037765 7 LPNHDENG---AVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG--SKD 81 (153)
Q Consensus 7 ~e~~i~~~---~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~--~~d 81 (153)
+|.++.+= +++--|.+|..|++. +..| | .+..+..+.||+.++. +-|+ =|+++.=-|... .++
T Consensus 1481 aerAL~tIN~REeeEKLNiWiA~lNl-En~y--G---~eesl~kVFeRAcqyc---d~~~---V~~~L~~iy~k~ek~~~ 1548 (1710)
T KOG1070|consen 1481 AERALKTINFREEEEKLNIWIAYLNL-ENAY--G---TEESLKKVFERACQYC---DAYT---VHLKLLGIYEKSEKNDE 1548 (1710)
T ss_pred HHHHhhhCCcchhHHHHHHHHHHHhH-HHhh--C---cHHHHHHHHHHHHHhc---chHH---HHHHHHHHHHHhhcchh
Confidence 66666665 788999999999995 5454 3 4567899999988773 2233 345555445442 567
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+.++|..|..+ -| +.-.-|..||.+|-.+..=+.|..|+.++++.-
T Consensus 1549 A~ell~~m~KK-F~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1549 ADELLRLMLKK-FG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHHHH-hc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 88999988764 55 677789999999999999999999999999865
No 16
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.85 E-value=0.83 Score=24.86 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
|..|-..|..+...|++++|.+.|+++++-.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4567778899999999999999999998743
No 17
>PRK14136 recX recombination regulator RecX; Provisional
Probab=90.50 E-value=4.1 Score=35.12 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
.+++.+|.+++ ...|-||.||.+.|+..--...=|..|=..|..+||...+.. .+.+.+-+ ..++.|.+++++-.
T Consensus 194 e~IE~VIerLk-e~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLIE--qALeeieE--DE~E~A~~L~eKK~ 268 (309)
T PRK14136 194 DSVEPLLDALE-REGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALVE--SVGAQLRE--TEFERAQAVWRKKF 268 (309)
T ss_pred HHHHHHHHHHH-HcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHH--HHHHhccH--hHHHHHHHHHHHHh
Confidence 45566666653 456999999999999763222348899999999999988765 22222211 23667777777655
Q ss_pred hCCCCcHHHHHHHHHHHHHH
Q 037765 127 SRKAEPLDKLEEALALFIDR 146 (153)
Q Consensus 127 ~~~A~P~~~L~~~~~~F~~R 146 (153)
..... ....+.+...|+.+
T Consensus 269 ~~~~~-d~kek~K~iRfL~r 287 (309)
T PRK14136 269 GALPQ-TPAERAKQARFLAA 287 (309)
T ss_pred cccCc-CHHHHHHHHHHHHH
Confidence 33211 12334444555543
No 18
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.42 E-value=2.9 Score=38.91 Aligned_cols=95 Identities=23% Similarity=0.407 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCC-------H----HHHHHH-HHhCCcchHHHHHHHHHHHHHHH-
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKD-------Y----EKVFRE-MEELEICTGHSLLYQWYAIFLEL- 111 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d-------~----~~if~~-L~~~~IG~~~AlfYe~wA~~lE~- 111 (153)
+-.|+.||+.+-.+ |.+|..|.+++.. . ..-|.| |...|.-.+...+|.+|-.+++.
T Consensus 72 VEkLF~RCLvkvLn----------lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~v 141 (656)
T KOG1914|consen 72 VEKLFSRCLVKVLN----------LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGV 141 (656)
T ss_pred HHHHHHHHHHHHhh----------HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcc
Confidence 56677888887655 7899998886431 1 123333 33445557788899999888764
Q ss_pred --------cCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 037765 112 --------NGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 112 --------~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
+++...-..||++|+..--.-++.|-+.|.+|+.-+-.
T Consensus 142 ea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~ 187 (656)
T KOG1914|consen 142 EAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINI 187 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH
Confidence 33666788999999998888899999999999876543
No 19
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.17 E-value=2.4 Score=29.09 Aligned_cols=53 Identities=15% Similarity=0.321 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------CCCCcHHHHHHHHHHHHHHHHH
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS----------RKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~----------~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
+.|.-|..=|.-+++.|+|.+|...|+.||+ .+..+.+.+..+..+...|...
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~ 66 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQA 66 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 3466777888999999999999999999997 3446777788888888888654
No 20
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.00 E-value=0.75 Score=27.36 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
.+..+|..+...|++++|.++|++.++....-
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46678999999999999999999999976443
No 21
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.90 E-value=2.2 Score=29.32 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCcHHH----HHHHHHHHHHHHH
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS-----RKAEPLDK----LEEALALFIDRLS 148 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-----~~A~P~~~----L~~~~~~F~~R~~ 148 (153)
+.|..|..=|--+++.|++++|..-|+.||+ -++.|-+. ++++-.+.+.|..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae 64 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999998 33433333 3455555665544
No 22
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=89.71 E-value=3.1 Score=27.60 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCc----HHHHHHHHHHHHHHHHH
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS-----RKAEP----LDKLEEALALFIDRLSE 149 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-----~~A~P----~~~L~~~~~~F~~R~~~ 149 (153)
.-|..+..=|.-.+..|++++|...|..|+. -+..| .+.+..+..+...|+..
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~ 67 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEE 67 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4466777778889999999999999999887 22334 46667777777777665
No 23
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.55 E-value=1.2 Score=24.41 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
|..|..-|.++...|++++|.+.|+++++-
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346777899999999999999999999874
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=89.23 E-value=1.4 Score=35.66 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHhcccCCH---HHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 64 NDIRFLKIWFLYLEGSKDY---EKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 64 nD~RyLkiWi~Ya~~~~d~---~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
.|++++..++.......+. .+++..+....--...+.||...|.++...|+.++|.++|++++.....
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4677777777766554544 4566665543333467889999999999999999999999999997654
No 25
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=88.67 E-value=3.1 Score=27.54 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhcc---cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG---SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVY 122 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~---~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~ 122 (153)
+.++++++..-.+++ ++. +|+..|.. ..+..+.+..+...+++.......--.|..+...|++++|.++|
T Consensus 9 i~~~~k~~~~~~~~~---~~~----~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 9 IKYYEKLLELDPTNP---NSA----YLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHCGTH---HHH----HHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCh---hHH----HHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 556667666644321 222 45544543 34555555555555555555444445599999999999999999
Q ss_pred HH
Q 037765 123 QI 124 (153)
Q Consensus 123 ~~ 124 (153)
.+
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 26
>PRK14134 recX recombination regulator RecX; Provisional
Probab=88.11 E-value=5.8 Score=33.39 Aligned_cols=96 Identities=9% Similarity=0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
.++++++.+++ ...|-||.||.+.|+..--...-|..|-.-|..+||...+.. .+.+.+- .....+.|..+.++-.
T Consensus 93 ~~Ie~vI~~L~-e~~yldD~ryA~~yv~~~~~~~G~~~I~~eL~qKGI~~~iIe--~al~~~~-~e~e~e~a~~l~~Kk~ 168 (283)
T PRK14134 93 DAVNRVIRFLK-EYNFIDDDKYCDMYIREKINSYGRNKIKYTLLNKGIKENIII--EKINNID-EEKEKKVAYKLAEKKY 168 (283)
T ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHCCCCHHHHH--HHHHhCC-hhhHHHHHHHHHHHhh
Confidence 45666666654 446999999999999864333458999999999999988654 2222211 1112355666665554
Q ss_pred hCCC---CcHHHHHHHHHHHHHH
Q 037765 127 SRKA---EPLDKLEEALALFIDR 146 (153)
Q Consensus 127 ~~~A---~P~~~L~~~~~~F~~R 146 (153)
...+ .|....+++...|+.|
T Consensus 169 ~~~~~~~~~~~k~k~Kl~~~L~r 191 (283)
T PRK14134 169 KILILSEKNKFKIYKKLGPYLIS 191 (283)
T ss_pred cccccccccHHHHHHHHHHHHHH
Confidence 4332 2344566666666654
No 27
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.81 E-value=3.3 Score=28.24 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCc----HHHHHHHHHHHHHHHHH
Q 037765 96 TGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS-----RKAEP----LDKLEEALALFIDRLSE 149 (153)
Q Consensus 96 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-----~~A~P----~~~L~~~~~~F~~R~~~ 149 (153)
..-|.-+..=|.-++..|++++|...|..||+ -+.+| .+.+..+..+...|...
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~ 65 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA 65 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788999999999999999999998 33455 44455566666666543
No 28
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=87.56 E-value=4.4 Score=26.45 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHh
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS---------RKAEPLDKLEEALALFIDRLSER 150 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~---------~~A~P~~~L~~~~~~F~~R~~~~ 150 (153)
.-|.-+..=|.-.+..|++++|...|..||. .+.+=.+.|.++-.+...|....
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~l 65 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKL 65 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778889999999999999999999988 12222234667777777766543
No 29
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=86.67 E-value=7.2 Score=40.00 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccC------CHHHHHHHHHhCCc
Q 037765 21 LPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSK------DYEKVFREMEELEI 94 (153)
Q Consensus 21 ~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~------d~~~if~~L~~~~I 94 (153)
-+|++|+.+..+- +-...--.+-||++.+. -|+...-=|+||+.|.++-. .-.+||+-.-..
T Consensus 1459 i~WI~YMaf~Lel------sEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-- 1526 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLEL------SEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-- 1526 (1710)
T ss_pred hHHHHHHHHHhhh------hhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--
Confidence 4799999998764 12345578889999886 24555667999999998621 124666544321
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 037765 95 CTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDR 146 (153)
Q Consensus 95 G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R 146 (153)
+.-. --|...+.+++..+.+++|.++|++=+++=- -.-..-..|.+|.-|
T Consensus 1527 cd~~-~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1527 CDAY-TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLR 1576 (1710)
T ss_pred cchH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhc
Confidence 1111 1355666777888899999999999887543 222333345555443
No 30
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=86.41 E-value=6.8 Score=25.94 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCcH----HHHHHHHHHHHHHHHH
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS-----RKAEPL----DKLEEALALFIDRLSE 149 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-----~~A~P~----~~L~~~~~~F~~R~~~ 149 (153)
.-|..+..=|.-.+..|++++|...|..|+. .+..|- +.|..+..+...|...
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~ 65 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEF 65 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788889999999999999999988 233343 3455555556655443
No 31
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.29 E-value=1.6 Score=21.55 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.|...|..+...|++++|...|+.+|+..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 56778999999999999999999998753
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=85.98 E-value=4.9 Score=38.44 Aligned_cols=93 Identities=18% Similarity=0.389 Sum_probs=69.0
Q ss_pred HHHHHHHH--HHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc------CCHHHHHHHHHhC
Q 037765 21 LPWLQSAK--KALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS------KDYEKVFREMEEL 92 (153)
Q Consensus 21 ~~w~~yI~--w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~------~d~~~if~~L~~~ 92 (153)
.+|..|++ |..++ ...-..|||+|++.|-+ |-|+|+..-... ..+++.| +..-
T Consensus 652 Rv~mKs~~~er~ld~--------~eeA~rllEe~lk~fp~---------f~Kl~lmlGQi~e~~~~ie~aR~aY--~~G~ 712 (913)
T KOG0495|consen 652 RVWMKSANLERYLDN--------VEEALRLLEEALKSFPD---------FHKLWLMLGQIEEQMENIEMAREAY--LQGT 712 (913)
T ss_pred hhhHHHhHHHHHhhh--------HHHHHHHHHHHHHhCCc---------hHHHHHHHhHHHHHHHHHHHHHHHH--Hhcc
Confidence 46777764 43332 23457889999999954 669999876643 3345544 4455
Q ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 93 EICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 93 ~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
+.+-.+-++|.--|.+-|+.|..-+|..|+.+|.-+|..-
T Consensus 713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 5566789999999999999999999999999999887543
No 33
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.52 E-value=0.78 Score=26.27 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 102 YQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 102 Ye~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
|..-|.++...|++++|.++|+..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4466889999999999999999944
No 34
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=84.96 E-value=14 Score=27.72 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhccc-CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS-KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIG 125 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~-~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~G 125 (153)
.+++.++..+. ...|-||.||.+-++...... .-|..|-..|..+||...+..= +.+.+. ....+.|.++..+-
T Consensus 43 ~~i~~vl~~l~-~~~~ldD~~~a~~~~~~~~~~~~g~~~I~~~L~~kGi~~~~I~~--~l~~~~--~d~~e~a~~~~~k~ 117 (157)
T PRK00117 43 EVIEAVLDRLK-EEGLLDDERFAESFVRSRARKGYGPRRIRQELRQKGVDREIIEE--ALAELD--IDWEELARELARKK 117 (157)
T ss_pred HHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHcCCCHHHHHH--HHHHcC--ccHHHHHHHHHHHH
Confidence 46667777765 455999999999999987322 3588999999999999887542 222211 12223344444433
Q ss_pred HhCC-CCcHHHHHHHHHHHHHH
Q 037765 126 ISRK-AEPLDKLEEALALFIDR 146 (153)
Q Consensus 126 i~~~-A~P~~~L~~~~~~F~~R 146 (153)
..+. ..|. .++++...+..|
T Consensus 118 ~~~~~~~~~-~~k~Ki~~~L~r 138 (157)
T PRK00117 118 FRRPLPDDA-KEKAKLVRFLAR 138 (157)
T ss_pred cCCCCCCCH-HHHHHHHHHHHH
Confidence 3322 2233 556666655544
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.80 E-value=2.2 Score=26.83 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
-|..|...|..+...|++++|...|.++|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 37789999999999999999999999999965
No 36
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.88 E-value=19 Score=30.48 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=71.1
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc-------
Q 037765 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS------- 79 (153)
Q Consensus 7 ~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~------- 79 (153)
+|.|+.. -.|=-.+|+.|++-..+-+|+ ..+....++++.+. +-...||+.|++++
T Consensus 54 lerAL~~--np~~~~L~l~~l~~~~~~~~~------~~l~~~we~~l~~~---------~~~~~LW~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 54 LERALKH--NPDSERLLLGYLEEGEKVWDS------EKLAKKWEELLFKN---------PGSPELWREYLDFRQSNFASF 116 (321)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHC---------CCChHHHHHHHHHHHHHhccC
Confidence 5666666 224457788888876665532 35777777777773 33678999998852
Q ss_pred --CCHHHHH----HHHHhCCcch------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 --KDYEKVF----REMEELEICT------------GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 --~d~~~if----~~L~~~~IG~------------~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
++-.++| ..|....=|+ .+.-.+...+.++-..|..+.|..+++.=+.-+
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 1233443 3444444443 455667788999999999999999999998843
No 37
>PRK14135 recX recombination regulator RecX; Provisional
Probab=82.83 E-value=17 Score=29.57 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhccc--CCHHHHHHHHHhCCcchHHHH
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS--KDYEKVFREMEELEICTGHSL 100 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~--~d~~~if~~L~~~~IG~~~Al 100 (153)
..+++.++..+. ...|-||.||.+-|+...-.. .-|..|-.-|..+||...+..
T Consensus 88 ~~~Ie~vl~~l~-~~~~ldD~~~a~~~~~~~~~~~~~g~~~I~~kL~~kGi~~~~Ie 143 (263)
T PRK14135 88 EEIISEVIDKLK-EEKYIDDKEYAESYVRTNINTGDKGPRVIKQKLLQKGIEDEIIE 143 (263)
T ss_pred HHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCHHHHH
Confidence 456777777765 456899999999999875433 358899999999999988765
No 38
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=82.51 E-value=5.8 Score=24.66 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 79 SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 79 ~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.+++..+|+.+.... -..+..+-..+.++...|++++|..+|+..++..
T Consensus 13 ~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 13 YDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456778888888888 4466667777888889999999999999988643
No 39
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.35 E-value=8.2 Score=25.81 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCc----HHHHHHHHHHHHHHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGIS-----RKAEP----LDKLEEALALFIDRLSE 149 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-----~~A~P----~~~L~~~~~~F~~R~~~ 149 (153)
-|.++..=|.-.+..|++++|...|..|+. .+.+| .+.+..+..+...|...
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~ 65 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEK 65 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 466777778889999999999999999988 12222 24456666666666544
No 40
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.85 E-value=5.9 Score=21.56 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
|..|-.-+..+...|++++|..-|+++|+-+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3456667888999999999999999999754
No 41
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.51 E-value=3.7 Score=21.56 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037765 113 GKWRDAHMVYQIGISRKAEPLDKLEEALALFI 144 (153)
Q Consensus 113 ~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~ 144 (153)
|+.+.|..||++|+..... ...+-..|.+|+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHHHHH
Confidence 5678899999999987642 334555555555
No 42
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=80.49 E-value=9.5 Score=25.81 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------CCCCcHHHHHHHHHHHHHHHHH
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGIS---------RKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~---------~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
|.+-..=|.-.+..|++++|...|..||+ .+..-.+.|..+..+...|.+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~ 65 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEE 65 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444556778889999999999999988 2333345677777888877654
No 43
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.38 E-value=9.1 Score=21.23 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
|.-+..-|..+-..|++++|..+++..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 44566778899999999999999998876
No 44
>PRK14137 recX recombination regulator RecX; Provisional
Probab=75.37 E-value=36 Score=27.24 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
.+++.+|.+++. ..|-||.||.+.... ..---|.-|=.-|..+||...+.. .+.+.+ +...-++.|..+.++-.
T Consensus 72 e~Ie~vI~rL~e-~gyLDD~rfAe~~~~--~k~~Gp~rI~~eL~qKGI~~~lI~--~al~~~-d~ede~e~a~~l~~KK~ 145 (195)
T PRK14137 72 ALVTEVLERVQE-LGYQDDAQVARAENS--RRGVGALRVRQTLRRRGVEETLIE--ETLAAR-DPQEEQQEARNLLERRW 145 (195)
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHH--hcCchHHHHHHHHHHcCCCHHHHH--HHHHhc-CchhHHHHHHHHHHHhc
Confidence 455666666544 359999999997522 111257899999999999988765 222222 11123456666666554
Q ss_pred hCCCCcHHHHHHHHHHHHHH
Q 037765 127 SRKAEPLDKLEEALALFIDR 146 (153)
Q Consensus 127 ~~~A~P~~~L~~~~~~F~~R 146 (153)
...+ +....+++...|+.|
T Consensus 146 ~~~~-~~~~~k~K~~~~L~r 164 (195)
T PRK14137 146 SSFA-RKRDPRASAYAFLAR 164 (195)
T ss_pred cccC-cchhHHHHHHHHHHH
Confidence 4322 112334444455543
No 45
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=75.00 E-value=9.1 Score=24.61 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
.+|..|...|.++...|++++|...|++.++-
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35777889999999999999999999999975
No 46
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=73.97 E-value=12 Score=23.54 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHH
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKL 136 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L 136 (153)
..+++..+... .......|...|.++...|++.+|.+.|+..++....+.+..
T Consensus 14 A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 14 ALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 34455554443 444677788899999999999999999999998877665544
No 47
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=73.35 E-value=8.1 Score=24.86 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.+|..|-.-|.++...|++++|.+.|++.++
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999999999875
No 48
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=72.82 E-value=11 Score=25.69 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---------CCCCcHHHHHHHHHHHHHHHHH
Q 037765 103 QWYAIFLELNGKWRDAHMVYQIGIS---------RKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 103 e~wA~~lE~~~~~~~A~~I~~~Gi~---------~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
..-|.-.+..|+|++|...|+.||+ .+..-.+.++.+..+...|-++
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~ 65 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEE 65 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999988887 1222245566667777766554
No 49
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.65 E-value=20 Score=24.50 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCcHHHHHHHHHHHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGIS-----RKAEPLDKLEEALALFIDR 146 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-----~~A~P~~~L~~~~~~F~~R 146 (153)
-|.|...=|.-....|++++|..+|..|++ .+..-.+.++.++..|-..
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~a~~ 58 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQLARQ 58 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 355666667778889999999999999998 3334455677777644433
No 50
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=70.63 E-value=20 Score=21.40 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
++..+.|....... ......+...+..+...|++++|...+..++...
T Consensus 51 ~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 51 EEALEDYEKALELD--PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 44566666655543 3333667788888999999999999998887654
No 51
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=67.89 E-value=15 Score=24.59 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhC
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFL-ELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~~~~~~A~~I~~~Gi~~ 128 (153)
.+|..|..+.=||.++|.++.+|-... +..++...|..=|-+|+.+
T Consensus 17 ~~v~~FF~~DPlGqkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~L~~ 63 (64)
T PF05596_consen 17 EEVRNFFYEDPLGQKIAQLAKDWNEICQEVRKKIRAALAEYCKGLKN 63 (64)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467788889999999999999997765 4588888888888888764
No 52
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=67.75 E-value=34 Score=22.86 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcch-HHHHHHHHHHHHHHHcCCHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLE-GSKDYEKVFREMEELEICT-GHSLLYQWYAIFLELNGKWRDAHMV 121 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~-~~~d~~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~~~~~~A~~I 121 (153)
.-...+++++..+.+++ +.-+.+|..--+.+.. ..+.+.+.|.-+....-+. ..+..+...+..+...|++++|...
T Consensus 20 ~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 20 DAIQAFQAFLKKYPKST-YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 34666667766543332 2334444444443332 2455778888777654443 2355677788888999999999999
Q ss_pred HHHHHhCCCCc
Q 037765 122 YQIGISRKAEP 132 (153)
Q Consensus 122 ~~~Gi~~~A~P 132 (153)
|..-+......
T Consensus 99 ~~~~~~~~p~~ 109 (119)
T TIGR02795 99 LQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHCcCC
Confidence 99999876544
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=67.61 E-value=39 Score=31.05 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCcch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----------CCcHHHHHHHH
Q 037765 83 EKVFREMEELEICT-GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK-----------AEPLDKLEEAL 140 (153)
Q Consensus 83 ~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~-----------A~P~~~L~~~~ 140 (153)
.+|+. ...|.-. .+|-.|...|.++-++|+|++|.+.|+..|++. +.|+..|-..+
T Consensus 352 l~i~~--~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 352 LKIYL--DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred HHHHH--hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 34444 5566666 889999999999999999999999999999965 55666666555
No 54
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=65.73 E-value=8.7 Score=23.86 Aligned_cols=49 Identities=6% Similarity=0.033 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
++..+|+-+....=+ .+..+..+|.++-..|++++|.+++...+.....
T Consensus 9 ~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 9 EAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 445666666554333 4555668999999999999999999999987755
No 55
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=64.11 E-value=34 Score=33.92 Aligned_cols=106 Identities=11% Similarity=0.036 Sum_probs=66.4
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCcc-ccccHHHHHHHHHHhc----ccC
Q 037765 6 ILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQ-YKNDIRFLKIWFLYLE----GSK 80 (153)
Q Consensus 6 ~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~-Y~nD~RyLkiWi~Ya~----~~~ 80 (153)
+.++++ .+.+++|+..|.+||.|+. +|- ++.+.-...+-++.|...+..... +..=+.||+.|+...+ +-.
T Consensus 2 ~~~h~~-~~~~~~~~n~eq~li~el~-~~~--~~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~n 77 (974)
T KOG1166|consen 2 AEIHVQ-EQQNPTPLNYEQRLIYELE-SYA--GNDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRN 77 (974)
T ss_pred chhhhh-hhccCcHHHHHHHHHHHHH-hhc--CCCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccc
Confidence 345566 8899999999999999955 443 235556677778888877766655 3333344444444433 233
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcH
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPL 133 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~ 133 (153)
||+ +.-+|. . ++....+++|..+|..=-..++-+.
T Consensus 78 D~R--------------fl~~~~---~-~~~~e~~~d~~d~f~~m~~kgIg~~ 112 (974)
T KOG1166|consen 78 DPR--------------FLILWC---S-LELREELQDAEDFFSYLENKGIGTT 112 (974)
T ss_pred cHH--------------HHHHHH---h-HHHHHHHhhHHHHHHHHHhccccch
Confidence 555 222222 2 6777778888888877666665554
No 56
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=63.24 E-value=30 Score=21.40 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNG-KWRDAHMVYQIGISR 128 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~-~~~~A~~I~~~Gi~~ 128 (153)
+...|.-... +....+..|...|..+...| ++++|.+.++++|+-
T Consensus 22 A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 22 AIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3444444333 34556778888999999999 799999999999874
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=62.63 E-value=26 Score=26.27 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHhccCccccccHHHHHHHHHHhcc--cCCHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 53 INTFKHHSQYKNDIRFLKIWFLYLEG--SKDYEKVFREMEELEIC-TGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 53 ~~~f~~~~~Y~nD~RyLkiWi~Ya~~--~~d~~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.......++.++-.-|...=..|... ..++...|.......-. ...+..|...|..+...|++++|...|+.+++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33333334333333333333334332 33456666655543221 1246789999999999999999999999999965
Q ss_pred CC
Q 037765 130 AE 131 (153)
Q Consensus 130 A~ 131 (153)
..
T Consensus 103 p~ 104 (172)
T PRK02603 103 PK 104 (172)
T ss_pred cc
Confidence 43
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=61.71 E-value=1.1e+02 Score=29.25 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=41.9
Q ss_pred ccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHH
Q 037765 78 GSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLE 137 (153)
Q Consensus 78 ~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~ 137 (153)
.+.++.++|.-+.. =+...+.-+..||..|...|+.++|...|+.+|+..+--..++.
T Consensus 169 ~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 169 QSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred chHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 35677788888777 34456667778888888888888888888888886655554433
No 59
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.32 E-value=47 Score=30.86 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=76.9
Q ss_pred cccccccccccCCCCCCcHHHHHHHHHHHHhcC----------CCC-----CCChhhHHHHHHHHHHHhccCccccccHH
Q 037765 3 TAVILPNHDENGAVHDPLLPWLQSAKKALDEWY----------SGK-----DSGATDLYKLLSNCINTFKHHSQYKNDIR 67 (153)
Q Consensus 3 ~~~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p----------~g~-----~~~~~~l~~lLErc~~~f~~~~~Y~nD~R 67 (153)
+.+-||.-|+..+. -+..+++||+.=. +.- .+| .+....+..+..++|.+|.. |+
T Consensus 36 ~Rr~fE~kL~rr~~--~i~Dfi~YI~YE~-nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~------D~- 105 (568)
T KOG2396|consen 36 KRRDFELKLQRRTL--SIEDFINYIQYEI-NLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNG------DV- 105 (568)
T ss_pred HHHHHHHHHccCcc--cHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCC------CH-
Confidence 34557777766543 3677888885411 100 011 11234577778888888755 54
Q ss_pred HHHHHHHHhcccC------CHHHHHHHHHhCCcchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 037765 68 FLKIWFLYLEGSK------DYEKVFREMEELEICTGHSLLYQWYAIFLEL-NGKWRDAHMVYQIGISRKAEPLDKLEEAL 140 (153)
Q Consensus 68 yLkiWi~Ya~~~~------d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~ 140 (153)
++|..|+.+|. .-..||..|...+ ..-+..|+-=|.++.. .-+.+.|..++.+|+..+.+- .+|...|
T Consensus 106 --~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds-p~Lw~ey 180 (568)
T KOG2396|consen 106 --KLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS-PKLWKEY 180 (568)
T ss_pred --HHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC-hHHHHHH
Confidence 56777776643 2358898887754 3456677776766655 445999999999999988543 3444443
No 60
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=60.73 E-value=62 Score=23.49 Aligned_cols=79 Identities=10% Similarity=-0.002 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcchHH-HHHHHHHHHHHHHcCCHHHHHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLE-GSKDYEKVFREMEELEICTGH-SLLYQWYAIFLELNGKWRDAHMVY 122 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~-~~~d~~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~~~~~~A~~I~ 122 (153)
+...++.++..+.+. .|....++..-=+.+.. -.+++..+|.....+.-...+ +.-....|.++...|++++|..++
T Consensus 30 ~~~~~~~l~~~~~~s-~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 30 AEAAAEQLAKDYPSS-PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344455555444333 24444444422222221 123344555555544421111 122223455555555555555555
Q ss_pred HH
Q 037765 123 QI 124 (153)
Q Consensus 123 ~~ 124 (153)
+.
T Consensus 109 ~~ 110 (145)
T PF09976_consen 109 QQ 110 (145)
T ss_pred Hh
Confidence 33
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=57.84 E-value=45 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CcHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA-EPLDKL 136 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A-~P~~~L 136 (153)
-+.++..+|..+...|++++|...|++.+..+. .|.-.+
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccc
Confidence 345788899999999999999999999998543 454443
No 62
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=57.61 E-value=1.7e+02 Score=27.53 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=70.7
Q ss_pred ChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc----CCHHHHHHHHHh--CCcchH--HHHHHHHHHHHHHHc
Q 037765 41 GATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS----KDYEKVFREMEE--LEICTG--HSLLYQWYAIFLELN 112 (153)
Q Consensus 41 ~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~----~d~~~if~~L~~--~~IG~~--~AlfYe~wA~~lE~~ 112 (153)
.-++-..+.|||+..| |.=+-+|+.|...+ .||.+|..--.+ .-||+. +..||..+=.+...+
T Consensus 94 ~~~~s~~Vfergv~ai---------p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~q 164 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAI---------PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQ 164 (577)
T ss_pred hHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhcc
Confidence 3456789999999998 45688999998753 467765543322 235655 456777777777899
Q ss_pred CCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 037765 113 GKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 113 ~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
++++.--.||.+=+.. |+--+..-+..|.+.+.+
T Consensus 165 ks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 165 KSWKRVANIYERILEI---PLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred ccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhc
Confidence 9999999999998874 666666667777666554
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=57.18 E-value=20 Score=31.64 Aligned_cols=42 Identities=7% Similarity=-0.068 Sum_probs=36.0
Q ss_pred HhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 90 EELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 90 ~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
-.+.-+..+|.||.+.|.......++++|...+.++++.+.+
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 345667889999999999999999999999999999985543
No 64
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=56.95 E-value=33 Score=26.69 Aligned_cols=48 Identities=6% Similarity=-0.201 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.++.+.|.......+- .+..|-.-+..+-..|+...|.+-|+..|...
T Consensus 86 ~~AI~aY~~A~~L~~d--dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 86 GEAIYAYGRAAQIKID--APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHhcCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3567777777777764 44444445667777888888888888888755
No 65
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=56.42 E-value=54 Score=32.21 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHH-HHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCc
Q 037765 16 VHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSN-CINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEI 94 (153)
Q Consensus 16 ~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLEr-c~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~I 94 (153)
.+|| ..|.+||+|+..++-- . ..-+..-+-. |.+.|. .+-++.+|+++.+.-+. .+.-
T Consensus 679 ~~d~-~~a~~~lR~~i~~~~~--~--~~~~q~~l~n~~~s~~~---~~~q~v~~~R~~~~~~~-------------~~~~ 737 (895)
T KOG2076|consen 679 ARDP-GDAFSYLRSVITQFQF--Y--LDVYQLNLWNLDFSYFS---KYGQRVCYLRLIMRLLV-------------KNKD 737 (895)
T ss_pred cCCH-HHHHHHHHHHHHHHhh--h--hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc-------------cCcc
Confidence 3455 5688899999987421 1 1123333444 555554 57889999999988333 2222
Q ss_pred c-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-cHHHHHHH----HHHHHHHHHHh
Q 037765 95 C-TGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE-PLDKLEEA----LALFIDRLSER 150 (153)
Q Consensus 95 G-~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~-P~~~L~~~----~~~F~~R~~~~ 150 (153)
+ ..++++ .+.++-..+.|+-|..+|.....-+.. |+.-|-=. |.+.++|+++|
T Consensus 738 ~~~~l~~i---~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~R 796 (895)
T KOG2076|consen 738 DTPPLALI---YGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNR 796 (895)
T ss_pred CCcceeee---echhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 122222 355667889999999999998886655 98876544 44455555443
No 66
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=56.08 E-value=23 Score=18.56 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
|+|..+ ..+...|++++|.++|+.=|++
T Consensus 2 a~~~~a--~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLA--RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHH--HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHccCHHHHHHHHHHHHHH
Confidence 344444 4455689999999999987764
No 67
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=55.16 E-value=20 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 104 WYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 104 ~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
..|..+...|++++|.++|+..+...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~ 27 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD 27 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35788899999999999999999987
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=54.92 E-value=1.2e+02 Score=24.98 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 037765 94 ICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFID 145 (153)
Q Consensus 94 IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~ 145 (153)
++.+++.-|--.+..++..|++++|...|++.++.+ |-+..+.++..++-
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~~~~~e~~~~~~e~ 280 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--VYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CchHHHHHHHHHHH
Confidence 455566667778889999999999999999999776 66777777766654
No 69
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.79 E-value=30 Score=17.98 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=21.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 106 AIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 106 A~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
=..+.+.|++++|.++|..=.+.+-.|
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 345677899999999998877777666
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=54.23 E-value=39 Score=23.59 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 79 SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 79 ~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
.++...+|.-.. .++.....+|-.-|.++...|++++|...|+.+++...
T Consensus 67 ~~~A~~~~~~~~--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 67 YEEAIDAYALAA--ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 344556666544 45677777888888999999999999999999999763
No 71
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.18 E-value=33 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 96 TGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 96 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.+.|-=|++=|--.|..|..++|...|++||.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 45666777778888888999999999999987
No 72
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=52.92 E-value=84 Score=31.03 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHh---CCcc-hHHHHHHHHHHHHHHHcCCHHHHHHH
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEE---LEIC-TGHSLLYQWYAIFLELNGKWRDAHMV 121 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~---~~IG-~~~AlfYe~wA~~lE~~~~~~~A~~I 121 (153)
..+..+++.+|.+.++|.. .+.+|-+|..+..+-.+.|..+.+ ..|| ++.+.+++--=.++-..++|+++.+|
T Consensus 169 ~~m~~KAV~~~i~~kq~~~---~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVG---IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHhhhcchH---HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 5667888899988887764 789999999987765555554433 3333 45666777766778889999999999
Q ss_pred HHHHHhC
Q 037765 122 YQIGISR 128 (153)
Q Consensus 122 ~~~Gi~~ 128 (153)
+++-+.-
T Consensus 246 LK~iL~~ 252 (906)
T PRK14720 246 LKKILEH 252 (906)
T ss_pred HHHHHhc
Confidence 9999884
No 73
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=52.86 E-value=1.1e+02 Score=26.43 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHhccCccccccH--HH--HHHHHHHhc-ccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 43 TDLYKLLSNCINTFKHHSQYKNDI--RF--LKIWFLYLE-GSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 43 ~~l~~lLErc~~~f~~~~~Y~nD~--Ry--LkiWi~Ya~-~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
..+...+|+.++.. -+|+ .+ --=|+.|.. ..+.+.+.|+-.....+...... +...+.+++..|+.++
T Consensus 316 ~~~~~~~e~~lk~~------p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 316 EKLEKLIEKQAKNV------DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE 388 (409)
T ss_pred HHHHHHHHHHHHhC------CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence 34566666665442 3444 22 234555443 23345555552113222222222 5577888888888888
Q ss_pred HHHHHHHHHh
Q 037765 118 AHMVYQIGIS 127 (153)
Q Consensus 118 A~~I~~~Gi~ 127 (153)
|.++|++|+.
T Consensus 389 A~~~~~~~l~ 398 (409)
T TIGR00540 389 AAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHH
Confidence 8888888865
No 74
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=52.06 E-value=92 Score=22.79 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCc-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 82 YEKVFREMEELEI-CTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 82 ~~~if~~L~~~~I-G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
+..+|.--...|. |....--++..|..+-..|++++|..+++.++..
T Consensus 20 Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 20 AIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666553 4445556666777777777777777777777654
No 75
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=48.37 E-value=41 Score=17.70 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 102 YQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 102 Ye~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
|..--..+-+.|+++.|.++|..=.+.+-+|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5555666777888888888888766666555
No 76
>PF13041 PPR_2: PPR repeat family
Probab=48.22 E-value=55 Score=19.32 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHH
Q 037765 102 YQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDK 135 (153)
Q Consensus 102 Ye~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~ 135 (153)
|-..=..+.+.|++++|.++|+.=.+++-+|-..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~ 39 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSY 39 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 4444456778999999999999999998888643
No 77
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.85 E-value=33 Score=36.98 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHhcccCC---HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 65 DIRFLKIWFLYLEGSKD---YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 65 D~RyLkiWi~Ya~~~~d---~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+.+--++|+.+|+.+.. -.-.+.++.+.+-+. .+..|.+-|.++-+.|+-..|..|++.|+.
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 67789999999998663 357788888888777 999999999999999999999999999995
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.66 E-value=1.6e+02 Score=24.35 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhc-ccCCHHHHHHHHHhC-CcchHHHHHHHHHHHHHHHcCCHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLE-GSKDYEKVFREMEEL-EICTGHSLLYQWYAIFLELNGKWRDAHMV 121 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~-~~~d~~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~~~~~~A~~I 121 (153)
.-+..++..+..+-++. |.-+..|..-.+.|.. ..+++...|.-+..+ --+.+....+..-+..+...|++++|.++
T Consensus 161 ~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 161 DAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence 34667888888875543 5556665444444443 244677888888754 33333444444456677889999999999
Q ss_pred HHHHHhCCCCc
Q 037765 122 YQIGISRKAEP 132 (153)
Q Consensus 122 ~~~Gi~~~A~P 132 (153)
|+..|..-...
T Consensus 240 ~~~vi~~yP~s 250 (263)
T PRK10803 240 YQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHCcCC
Confidence 99999876444
No 79
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=46.04 E-value=63 Score=25.49 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=57.6
Q ss_pred HHHHHHHHhccCccccccHHHHHHHHHHhccc-CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 037765 48 LLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS-KDYEKVFREMEELEICTGHSLLYQWYAIFLEL---NGKWRDAHMVYQ 123 (153)
Q Consensus 48 lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~-~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~---~~~~~~A~~I~~ 123 (153)
++|+++..+ ....|-||.||...|+.=-... .-|.-|-+-|..+||+...- ...|+. ......|.++..
T Consensus 53 ~Ie~Vi~~l-~~~~~ldD~~fAe~~i~~r~~~g~G~~rl~qeL~qkGi~~~~I------e~aL~~~~~~~~~~~a~~~~~ 125 (174)
T COG2137 53 IIEEVIDRL-AEEGYLDDTRFAEAYIRSRSRKGKGPARLKQELKQKGIDDEII------EEALELIDEEDEQERARKVLR 125 (174)
T ss_pred HHHHHHHHH-HHcCcccHHHHHHHHHHHHHhcccChHHHHHHHHHcCCCHHHH------HHHHhccchHHHHHHHHHHHH
Confidence 356666654 4456999999999999865543 46999999999999987643 233332 223345555555
Q ss_pred HHHhCCCC-cHHHHHHHHHHHHH
Q 037765 124 IGISRKAE-PLDKLEEALALFID 145 (153)
Q Consensus 124 ~Gi~~~A~-P~~~L~~~~~~F~~ 145 (153)
+=..+... |-..++.+...|+.
T Consensus 126 kk~~~~~~~~~~~~k~Ki~r~L~ 148 (174)
T COG2137 126 KKFKRENKPPDKKEKAKIQRFLL 148 (174)
T ss_pred HHhCccccCcchhHHHHHHHHHH
Confidence 54444432 34455666555554
No 80
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=45.45 E-value=1.1e+02 Score=21.83 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHh-C------CcchHH--HHHHHHHHHHHHHc
Q 037765 42 ATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEE-L------EICTGH--SLLYQWYAIFLELN 112 (153)
Q Consensus 42 ~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~-~------~IG~~~--AlfYe~wA~~lE~~ 112 (153)
...+...||.|+..= . .+-.-+=.+=..|++. +|.++..||.+ . .++.-| +-+|++-..++.+.
T Consensus 23 ~~~l~~yLe~~~~~~--~---~~~~~~~~li~ly~~~--~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 23 LEELIPYLESALKLN--S---ENPALQTKLIELYAKY--DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHHHHccC--c---cchhHHHHHHHHHHHH--CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 356777888777651 1 1111222222223332 45555566652 1 122222 12789999999999
Q ss_pred CCHHHHHHHHHHH
Q 037765 113 GKWRDAHMVYQIG 125 (153)
Q Consensus 113 ~~~~~A~~I~~~G 125 (153)
|.+++|.+++...
T Consensus 96 ~~~~~Al~~~l~~ 108 (140)
T smart00299 96 GNFKDAIVTLIEH 108 (140)
T ss_pred cCHHHHHHHHHHc
Confidence 9999999887653
No 81
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=44.39 E-value=1.2e+02 Score=25.04 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
+.+|...+..+...|++++|.++|++.++.
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 444555555555555555555555555543
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=43.13 E-value=1.1e+02 Score=21.17 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 79 SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 79 ~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
..++...|..+... +.....+|...|..+...|++.+|..+|+.++...-..
T Consensus 33 ~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 33 YDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777776664 45567888889999999999999999999999876443
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=42.79 E-value=1.9e+02 Score=23.83 Aligned_cols=27 Identities=11% Similarity=-0.087 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.|...+..+...|++++|..+|...++
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 344445555555555555555555554
No 84
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=42.55 E-value=2.6e+02 Score=25.35 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=35.7
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.+.++|...... .......+...|.++...|++++|.+.|+.+++-.
T Consensus 526 eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 526 EAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 455566554443 34556678888999999999999999999998764
No 85
>PF12854 PPR_1: PPR repeat
Probab=42.04 E-value=58 Score=18.18 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQI 124 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~~ 124 (153)
-|-..-.-+.+.|+.++|.+++..
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455666778899999999999864
No 86
>PRK09857 putative transposase; Provisional
Probab=41.98 E-value=1.7e+02 Score=24.64 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc---CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS---KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHM 120 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~---~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~ 120 (153)
++..++......+... +.++ ..++.|+.|+-.. +++.++++.+....= +...--..+|+-+++.|.-++|.+
T Consensus 187 dl~~~~~~l~~ll~~~--~~~~-~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~--~~~e~iMTiAEqL~qeG~qe~~~~ 261 (292)
T PRK09857 187 DLMGLVEQMACLLSSG--YAND-RQIKGLFNYILQTGDAVRFNDFIDGVAERSP--KHKESLMTIAERLRQEGEQSKALH 261 (292)
T ss_pred hHHHHHHHHHHHHHhc--cCCH-HHHHHHHHHHhhccccchHHHHHHHHHHhCc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 5677766666655543 2233 5589999998432 357788887765421 112223478888888887776666
Q ss_pred HHHHHHhCCCCc
Q 037765 121 VYQIGISRKAEP 132 (153)
Q Consensus 121 I~~~Gi~~~A~P 132 (153)
|-+.-+..+..+
T Consensus 262 ia~~ml~~g~~~ 273 (292)
T PRK09857 262 IAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHcCCCH
Confidence 666666665443
No 87
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=41.49 E-value=1.2e+02 Score=29.96 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcccC-----------------C--HHHHHHHHHhCCcchHHHHHHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSK-----------------D--YEKVFREMEELEICTGHSLLYQWY 105 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~-----------------d--~~~if~~L~~~~IG~~~AlfYe~w 105 (153)
+..+|-.+-..|.. -|+.+-.+|+..-+.... | ..-.|-++.++-+-... .||..|
T Consensus 139 l~~ll~eAN~lfar----g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFAR----GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-ELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-HHHHHH
Confidence 55566666666643 556666666666665422 1 12334444455444444 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHH
Q 037765 106 AIFLELNGKWRDAHMVYQIGISRKAEPLDKLEE 138 (153)
Q Consensus 106 A~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~ 138 (153)
|.+.++.|++.+|.-.|.++|+.+..-..-+.+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 999999999999999999999987554443333
No 88
>PRK15331 chaperone protein SicA; Provisional
Probab=40.84 E-value=60 Score=25.54 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=31.9
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
.+.+.|.+-.......-...||-. .++-..|+...|..-|...|.+
T Consensus 89 ~Ai~~Y~~A~~l~~~dp~p~f~ag--qC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 89 KACDLYAVAFTLLKNDYRPVFFTG--QCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHcccCCCCccchHH--HHHHHhCCHHHHHHHHHHHHhC
Confidence 466777777777777777777753 4555677777777777777774
No 89
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=40.78 E-value=93 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 037765 114 KWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSER 150 (153)
Q Consensus 114 ~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~~ 150 (153)
...+|..-|..-|.++-.|++++-.-.+.++.|++.+
T Consensus 13 ~~~~a~~~y~~~l~~~~dpLq~m~dmQ~~lq~~l~~~ 49 (172)
T PHA02602 13 GLDKAENAYKDILAENKDPLQVMLDMQKSLQVRLAND 49 (172)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccc
Confidence 7899999999999999999999999999999999753
No 90
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.45 E-value=53 Score=19.01 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 037765 114 KWRDAHMVYQIGISRKAEPLDKLEEALALFID 145 (153)
Q Consensus 114 ~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~ 145 (153)
.++.|..||++-+.....|...| ++..|+.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi--kyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI--KYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH--HHHHhhc
Confidence 47899999999999986666666 4666653
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=40.25 E-value=1.8e+02 Score=24.26 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCccccccHHHHHH---HHHHhcc---cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKI---WFLYLEG---SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHM 120 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLki---Wi~Ya~~---~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~ 120 (153)
.+-++-++.++ +.-.|.=-+.+ |+.++.- ..++.-+|+-|..+ -|. .......-|...-..|+|++|.+
T Consensus 148 dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~-t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 148 DLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGS-TPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp HHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S---SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 33344444443 34456655555 5555533 56789999998665 444 45556788888999999999999
Q ss_pred HHHHHHhCCCCcHHHHH
Q 037765 121 VYQIGISRKAEPLDKLE 137 (153)
Q Consensus 121 I~~~Gi~~~A~P~~~L~ 137 (153)
+++.++..+..--+.|-
T Consensus 223 ~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 223 LLEEALEKDPNDPDTLA 239 (290)
T ss_dssp HHHHHCCC-CCHHHHHH
T ss_pred HHHHHHHhccCCHHHHH
Confidence 99999987766555443
No 92
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=39.95 E-value=1.6e+02 Score=21.95 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.+...|.-..+. ....+..+...+..+...|+...|..-+...+.
T Consensus 90 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 90 KALEYYHQALEL--NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH
Confidence 344555444443 333445555667777777777776655555543
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=39.64 E-value=39 Score=33.59 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 100 LLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 100 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.+|..|++++|+.|..+.|..+|..+..
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 7899999999999999999999998765
No 94
>PLN03218 maturation of RBCL 1; Provisional
Probab=38.32 E-value=2.3e+02 Score=28.41 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcH
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPL 133 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~ 133 (153)
+++.++|..|...|+-.. ...|......+.+.|++++|.+++..-++.+-.|-
T Consensus 631 deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 456677777777766554 34566666666677777777777777776666664
No 95
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=38.06 E-value=54 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHc
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELN 112 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 112 (153)
..+..||..+||...+|.|=..|+...|+.
T Consensus 162 ~~~~~yLeeRGId~~la~fl~~y~~~kEq~ 191 (204)
T PF02330_consen 162 DAFMNYLEERGIDEELANFLHDYSTDKEQR 191 (204)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999988864
No 96
>PLN03218 maturation of RBCL 1; Provisional
Probab=37.85 E-value=1.4e+02 Score=29.90 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=50.9
Q ss_pred ccccccHHHHHHHHHHhcc--cCCHHHHHHHHHhCCcchHHHHHHHH-------------------------------HH
Q 037765 60 SQYKNDIRFLKIWFLYLEG--SKDYEKVFREMEELEICTGHSLLYQW-------------------------------YA 106 (153)
Q Consensus 60 ~~Y~nD~RyLkiWi~Ya~~--~~d~~~if~~L~~~~IG~~~AlfYe~-------------------------------wA 106 (153)
..-+|.+-|+.+.-.+.+. ..++.++|..|...|+-.--...|.. .-
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5667889999999999763 56889999999999975433332222 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCcH
Q 037765 107 IFLELNGKWRDAHMVYQIGISRKAEPL 133 (153)
Q Consensus 107 ~~lE~~~~~~~A~~I~~~Gi~~~A~P~ 133 (153)
..+.+.|++++|.+||..-++.+-.|-
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD 471 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKAD 471 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 234456777777777777777666663
No 97
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=37.73 E-value=60 Score=21.14 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=31.1
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQI 124 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~ 124 (153)
++..+|.-+....-...-+.++-.-|..+-..|+|++|..+++.
T Consensus 7 ~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 7 NAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555655555555422344555589999999999999999988
No 98
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=37.09 E-value=64 Score=26.41 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 037765 87 REMEELEICTGHSLLYQWYAIFLELN-GKWRDAHMVYQIGIS 127 (153)
Q Consensus 87 ~~L~~~~IG~~~AlfYe~wA~~lE~~-~~~~~A~~I~~~Gi~ 127 (153)
......|=....|..+..-|.++|.. |++++|.+.|+.++.
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 99
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=37.01 E-value=88 Score=30.36 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=47.9
Q ss_pred HHHHHHhcc---cCCHHHHHHHHH-hCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCcHHHHHH
Q 037765 70 KIWFLYLEG---SKDYEKVFREME-ELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK--AEPLDKLEE 138 (153)
Q Consensus 70 kiWi~Ya~~---~~d~~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~--A~P~~~L~~ 138 (153)
+||++++.+ .++-.+--.+|. .-++.-.+-.||.--.+++|++++.+.|.+-|..|+..+ .=|+=.|..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 578888764 334444444442 234455677789999999999999999999999999865 345444433
No 100
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=35.05 E-value=1.7e+02 Score=26.34 Aligned_cols=82 Identities=7% Similarity=-0.013 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 037765 43 TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVY 122 (153)
Q Consensus 43 ~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~ 122 (153)
..-..++++++....+++.- ..--.|+....--....+++.-+....- ....++...+..+...|++++|.++|
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVV----LNNLAWLYLELKDPRALEYAEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHH----HHHHHHHHHhcCcHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566777777664332211 1111233222211334566665555432 34455667788888899999999999
Q ss_pred HHHHhCCC
Q 037765 123 QIGISRKA 130 (153)
Q Consensus 123 ~~Gi~~~A 130 (153)
+..++...
T Consensus 861 ~~a~~~~~ 868 (899)
T TIGR02917 861 RKAVNIAP 868 (899)
T ss_pred HHHHhhCC
Confidence 99998653
No 101
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=35.01 E-value=56 Score=28.19 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+.+.+.|+-+.+.+=. ..=|...|..++..|+.++|.++|+.|+.-.
T Consensus 345 ~~A~~~le~al~~~P~---~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 345 QEASLAFRAALKQRPD---AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3456667666655422 2335677888888888888888888887643
No 102
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=34.88 E-value=1.5e+02 Score=21.82 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhCCcch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHH
Q 037765 80 KDYEKVFREMEELEICT-GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLD 134 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~ 134 (153)
+++...|.-.......+ ..+..|...|.++...|++++|...|+..+........
T Consensus 52 ~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 52 AEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 34556666554443332 25668899999999999999999999999987544443
No 103
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.29 E-value=2.8e+02 Score=23.00 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcC-----CHHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNG-----KWRDAH 119 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~-----~~~~A~ 119 (153)
..+++=.|+|+-. ++.|=..-+...+|.++|+....+|==...|.|-.=+.+.-.... ..+.|.
T Consensus 156 ~l~Ivv~C~RKtE-----------~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al 224 (258)
T PF07064_consen 156 YLEIVVNCARKTE-----------VRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCAL 224 (258)
T ss_pred hHHHHHHHHHhhH-----------HHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 5788888888753 556666666667999999999988876666666555543333344 688888
Q ss_pred HHHHHHHhCC
Q 037765 120 MVYQIGISRK 129 (153)
Q Consensus 120 ~I~~~Gi~~~ 129 (153)
++++..++++
T Consensus 225 ~LL~~a~~~~ 234 (258)
T PF07064_consen 225 RLLVMALESG 234 (258)
T ss_pred HHHHHHHhcc
Confidence 9999988865
No 104
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.80 E-value=1.1e+02 Score=21.93 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=32.5
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
++.++-..|.++|--..+..|| ..+|.+.+|.+++..=..
T Consensus 28 ~~~~~e~~L~~~~~~~eL~~lY-------~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHGKYQELVDLY-------QGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcCCHHHHHHHH-------HccCccHHHHHHHHHHhc
Confidence 7888899998888766666665 589999999999987665
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.65 E-value=1.3e+02 Score=28.68 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHH
Q 037765 66 IRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLE 137 (153)
Q Consensus 66 ~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~ 137 (153)
|-+...++.|+.. .+++...+..+... ....+.+.-.-|..|...|++++|.++|++.+..++.+-+-+.
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 3445556666543 45677777777664 5677888889999999999999999999999997766544443
No 106
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=32.45 E-value=80 Score=16.41 Aligned_cols=22 Identities=18% Similarity=0.007 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 037765 102 YQWYAIFLELNGKWRDAHMVYQ 123 (153)
Q Consensus 102 Ye~wA~~lE~~~~~~~A~~I~~ 123 (153)
...-|..+-..|+.++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456778889999999999875
No 107
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=32.37 E-value=72 Score=27.17 Aligned_cols=45 Identities=2% Similarity=0.059 Sum_probs=29.6
Q ss_pred hcCCCCCCChhhHHHHHHHHHHH------hccCccccccHHHHHHHHHHhc
Q 037765 33 EWYSGKDSGATDLYKLLSNCINT------FKHHSQYKNDIRFLKIWFLYLE 77 (153)
Q Consensus 33 ~~p~g~~~~~~~l~~lLErc~~~------f~~~~~Y~nD~RyLkiWi~Ya~ 77 (153)
-||+-..+........+++++.. +.-...|.++|.|++.|..-+.
T Consensus 122 LyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~ 172 (316)
T PF00762_consen 122 LYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIR 172 (316)
T ss_dssp SSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHH
T ss_pred CCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHH
Confidence 36775555566678888888877 3445899999999999998765
No 108
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=32.03 E-value=1.3e+02 Score=23.17 Aligned_cols=49 Identities=12% Similarity=-0.041 Sum_probs=35.3
Q ss_pred hCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHH
Q 037765 91 ELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEA 139 (153)
Q Consensus 91 ~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~ 139 (153)
++.|-.....=++.-|.++.+.|+.++|.+.|.+-......|-..+.--
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~ 76 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMC 76 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 5666666777777777888888888888888877777766666665543
No 109
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=31.86 E-value=54 Score=18.33 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAH 119 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~ 119 (153)
.+.-|-..|.++-..|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556777888888999999886
No 110
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]
Probab=31.14 E-value=24 Score=34.71 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHH
Q 037765 22 PWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIR 67 (153)
Q Consensus 22 ~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~R 67 (153)
-|-+||+=.+++|-+-+.--+++|.+..+.+.... +++.|+||+-
T Consensus 409 nW~rYin~~e~tYeq~~~~~~~kl~~~A~~a~~LL-~d~~y~~d~w 453 (1075)
T KOG3657|consen 409 NWERYINEAEQTYEQLKTEAKRKIIESARDACKLL-DDDPYKNDPW 453 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhccch
Confidence 39999999999887633333567778788777765 5588999974
No 111
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=31.08 E-value=3.3e+02 Score=25.15 Aligned_cols=81 Identities=10% Similarity=0.017 Sum_probs=44.1
Q ss_pred HHHHHHhccCccccccHHHHHHHHHHhc--ccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 50 SNCINTFKHHSQYKNDIRFLKIWFLYLE--GSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 50 Erc~~~f~~~~~Y~nD~RyLkiWi~Ya~--~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+.+.+.|...+. +|-.-|--+=--|+. ..+++.++|..|...|+..... -|..--..+.+.|++++|.+|+..-++
T Consensus 276 ~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 276 EDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-TFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 444555555442 233323222222333 2456778888888887765433 355555555566667777766666655
Q ss_pred CCCCc
Q 037765 128 RKAEP 132 (153)
Q Consensus 128 ~~A~P 132 (153)
.+-.|
T Consensus 354 ~g~~~ 358 (697)
T PLN03081 354 TGFPL 358 (697)
T ss_pred hCCCC
Confidence 55444
No 112
>PF09005 DUF1897: Domain of unknown function (DUF1897); InterPro: IPR015096 This domain is found in Psi proteins produced by Drosophila, and in various eukaryotic hypothetical proteins. It has no known function. ; PDB: 2BN6_A 2BN5_A.
Probab=31.07 E-value=35 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQ 123 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~ 123 (153)
+.|=..|++++-+.|...+|+.|=+
T Consensus 9 ~DYSaqW~eYYr~~G~~~~A~~i~~ 33 (38)
T PF09005_consen 9 PDYSAQWAEYYRQIGQHEEAEAIEQ 33 (38)
T ss_dssp ---CCHHHHHHCCCT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4455689999999999999998754
No 113
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=30.05 E-value=4.1e+02 Score=23.84 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
++..+++..|...+.. .+..+..-+..+...|++++|.+.|+..+.....+
T Consensus 686 ~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPK--AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHHHHHHHHhhCcC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 3456777777776644 34455666778888999999999999998876555
No 114
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=28.45 E-value=90 Score=15.78 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=15.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 037765 106 AIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 106 A~~lE~~~~~~~A~~I~~~Gi 126 (153)
=..+-+.|++++|.++|++=.
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHccchHHHHHHHHHHHh
Confidence 345667899999999987643
No 115
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=27.74 E-value=2.9e+02 Score=25.86 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCC--CCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc---cCCHHHHH-HHHHhCCcc-
Q 037765 23 WLQSAKKALDEWYS--GKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG---SKDYEKVF-REMEELEIC- 95 (153)
Q Consensus 23 w~~yI~w~~e~~p~--g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~---~~d~~~if-~~L~~~~IG- 95 (153)
|+.+|+|-.++ |- |+....+-+.=+.+..+.+|--.+ .+|+-|-.+ .+|-..+. .-.......
T Consensus 264 WlNwIkwE~en-~l~L~~~~~~qRi~y~~~q~~~y~~~~~---------evw~dys~Y~~~isd~q~al~tv~rg~~~sp 333 (660)
T COG5107 264 WLNWIKWEMEN-GLKLGGRPHEQRIHYIHNQILDYFYYAE---------EVWFDYSEYLIGISDKQKALKTVERGIEMSP 333 (660)
T ss_pred hhhHhhHhhcC-CcccCCCcHHHHHHHHHHHHHHHhhhhH---------HHHHHHHHHHhhccHHHHHHHHHHhcccCCC
Confidence 99999996655 43 444445556667778888774443 689988775 33433333 222222222
Q ss_pred ---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 96 ---TGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 96 ---~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
..+|..|+.=-.--+-.|.|++..+-+..-++
T Consensus 334 sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys 368 (660)
T COG5107 334 SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS 368 (660)
T ss_pred chheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence 23444444433333445566666666655554
No 116
>PHA01810 hypothetical protein
Probab=27.51 E-value=28 Score=24.38 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=9.9
Q ss_pred CCCCCcHHHHHH
Q 037765 15 AVHDPLLPWLQS 26 (153)
Q Consensus 15 ~~dDPL~~w~~y 26 (153)
.||||++.|--.
T Consensus 77 agddpieqwnmh 88 (100)
T PHA01810 77 AGDDPIEQWNMH 88 (100)
T ss_pred hCCChHHHHHhh
Confidence 599999999743
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=27.08 E-value=2.5e+02 Score=20.44 Aligned_cols=64 Identities=9% Similarity=-0.027 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 65 DIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 65 D~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
||.....|...+.. .+++.+.|..... +....+..+-.++..+...|++++|.+.|+..|..+.
T Consensus 54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45556677776653 3467788888876 4556677777888899999999999999999998553
No 118
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.05 E-value=1.9e+02 Score=19.01 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=35.3
Q ss_pred CHHHHHHHHHhCCcch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 81 DYEKVFREMEELEICT-GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 81 d~~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
.+.+.|.-+.+..=+. ..+..+-..+..+...|++++|...|+..+.....
T Consensus 20 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 20 DAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3456666665443222 12344556899999999999999999999986544
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=26.23 E-value=2.6e+02 Score=20.35 Aligned_cols=52 Identities=10% Similarity=-0.167 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 79 SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 79 ~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
.++..+.|..+.... ...+..|..-|..+...|++++|...|+.++..+..-
T Consensus 40 ~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 40 YSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 456788888877654 4467888999999999999999999999999966543
No 120
>smart00096 UTG Uteroglobin.
Probab=25.99 E-value=56 Score=22.09 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=35.9
Q ss_pred CccccccccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHH
Q 037765 1 MGTAVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCIN 54 (153)
Q Consensus 1 ~~~~~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~ 54 (153)
+||.--|+++++-|..|.-+-.=-.=||-..+..|.. ...++..+|++.+.
T Consensus 15 ~gt~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~---~k~~i~~ll~kI~~ 65 (69)
T smart00096 15 LGTPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQE---TRENILKLTEKIYT 65 (69)
T ss_pred cCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHc
Confidence 4677778888888876555544555788888887764 35678888888764
No 121
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=25.71 E-value=25 Score=22.77 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=13.4
Q ss_pred HHHHHHHhccCccccccHH
Q 037765 49 LSNCINTFKHHSQYKNDIR 67 (153)
Q Consensus 49 LErc~~~f~~~~~Y~nD~R 67 (153)
+-..-....+.+.|+||||
T Consensus 24 v~k~~~a~~ns~E~~NDPR 42 (54)
T PF04911_consen 24 VNKAQNAMMNSDEFKNDPR 42 (54)
T ss_pred HHHHHHHHhcCHHHhcCCC
Confidence 4444455567888999998
No 122
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.26 E-value=3.3e+02 Score=21.92 Aligned_cols=54 Identities=19% Similarity=0.062 Sum_probs=36.8
Q ss_pred CChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHH
Q 037765 40 SGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAH 119 (153)
Q Consensus 40 ~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~ 119 (153)
.+.+.++++|+++...|+...+ . ...+..--+-|..+...|++++|.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~----~-----------------------------R~~~~l~~~~A~ey~~~g~~~~A~ 198 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQ----N-----------------------------RMASYLSLEMAEEYFRLGDYDKAL 198 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhcc----c-----------------------------hHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3456789999999999987765 1 112222335566667788888888
Q ss_pred HHHHHHH
Q 037765 120 MVYQIGI 126 (153)
Q Consensus 120 ~I~~~Gi 126 (153)
+.|+.-.
T Consensus 199 ~~l~~~~ 205 (247)
T PF11817_consen 199 KLLEPAA 205 (247)
T ss_pred HHHHHHH
Confidence 8887764
No 123
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=24.18 E-value=1.1e+02 Score=26.52 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=32.6
Q ss_pred cCCCCCCChhhHHHHHHHHHH------HhccCccccccHHHHHHHHHHhc
Q 037765 34 WYSGKDSGATDLYKLLSNCIN------TFKHHSQYKNDIRFLKIWFLYLE 77 (153)
Q Consensus 34 ~p~g~~~~~~~l~~lLErc~~------~f~~~~~Y~nD~RyLkiWi~Ya~ 77 (153)
||+-+.+.......-+.|.++ .+.-.+.|.+++-|+..|..=+.
T Consensus 125 yPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~ 174 (320)
T COG0276 125 YPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIR 174 (320)
T ss_pred CcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHH
Confidence 555333444456777788886 57777999999999999988665
No 124
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=3.1e+02 Score=24.41 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------CCCCcHHHHHHHHHHHHHHHHH
Q 037765 96 TGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS----------RKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 96 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~----------~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
.+-|.=+..=|......++|.+|...|+-|++ ++-+-.+-+..++.+++.|-+.
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEk 70 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEK 70 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHH
Confidence 34455567778888889999999999998886 3334568888999999988764
No 125
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=23.58 E-value=1.2e+02 Score=28.05 Aligned_cols=12 Identities=0% Similarity=-0.067 Sum_probs=4.6
Q ss_pred HHHHHHHHHhCC
Q 037765 82 YEKVFREMEELE 93 (153)
Q Consensus 82 ~~~if~~L~~~~ 93 (153)
..+++..|.+.|
T Consensus 344 a~~i~~~m~~~g 355 (697)
T PLN03081 344 AKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHHHhC
Confidence 333333333333
No 126
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.34 E-value=1.6e+02 Score=16.94 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQ 123 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~ 123 (153)
+.-..|..+-.+|++++|..+|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34466888889999999999944
No 127
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=23.15 E-value=1.4e+02 Score=21.08 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcc
Q 037765 43 TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEIC 95 (153)
Q Consensus 43 ~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG 95 (153)
+.+-.|++.++..... +|+-|+..++.=-...-.|.+++..|...=.+
T Consensus 8 gtl~~Li~~L~~~~~~-----~d~~f~~~Flltyr~F~tp~~ll~~L~~rf~~ 55 (127)
T smart00229 8 GTLEKLIEHLTEAFDK-----ADPFFVETFLLTYRSFITTQELLQLLLYRYNA 55 (127)
T ss_pred ecHHHHHHHHcCCCcC-----CCHHHHHHHHHHhhhhCCHHHHHHHHHHHhCC
Confidence 3467777777765322 79999999988666677888888888665433
No 128
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=23.10 E-value=1.3e+02 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.405 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 037765 114 KWRDAHMVYQIGISRKAEPLDKLEEAL 140 (153)
Q Consensus 114 ~~~~A~~I~~~Gi~~~A~P~~~L~~~~ 140 (153)
.|+.|.+.|+.++.+++-| ..+++..
T Consensus 14 ~Ye~A~~~Ye~av~ng~~~-q~~Kql~ 39 (199)
T PF08717_consen 14 AYETARQAYEEAVANGSSP-QELKQLK 39 (199)
T ss_dssp HHHHHHHHHHHHHHCT--H-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHH
Confidence 4789999999999999888 5555543
No 129
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=22.88 E-value=44 Score=24.98 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=19.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhcC
Q 037765 11 DENGAVHDPLLPWLQSAKKALDEWY 35 (153)
Q Consensus 11 i~~~~~dDPL~~w~~yI~w~~e~~p 35 (153)
|..+-|. |+.+|.+.+.|+.++|+
T Consensus 11 i~~~lg~-~~~~w~~l~~~i~~~Y~ 34 (133)
T PF12663_consen 11 ISEYLGK-PLELWDELCSWIEETYP 34 (133)
T ss_pred HHHHHCc-cHHHHHHHHHHHHHHcC
Confidence 4444444 78999999999999987
No 130
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=22.80 E-value=2.7e+02 Score=25.58 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHh-CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 79 SKDYEKVFREMEE-LEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 79 ~~d~~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
..++.+...+|.. .+.-..-..+++.=|.++-+.|++++|..+|+.-|.+|..
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd 70 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD 70 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3566666667654 2333445568899999999999999999999999987643
No 131
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=22.42 E-value=71 Score=19.46 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 102 YQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 102 Ye~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
|.++..+++..+.+..+.+++..++
T Consensus 18 ~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 18 FDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4455555555555555555554443
No 132
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=22.22 E-value=3.4e+02 Score=23.48 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=46.0
Q ss_pred ccccHHHHHHHHHHhcc--cCCHHHHHHHHHhC--CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 62 YKNDIRFLKIWFLYLEG--SKDYEKVFREMEEL--EICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 62 Y~nD~RyLkiWi~Ya~~--~~d~~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
|.++..|-++=-.|... ..||..++.+|..+ .|.+-+ .-|.++..+|+...|.+..++++-
T Consensus 4 f~hs~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLl-----qls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 4 FEHSKAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLL-----QLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred EeCCHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44666677766666554 33999999999777 565544 458889999999999999998864
No 133
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.07 E-value=38 Score=26.68 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=32.3
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHH
Q 037765 2 GTAVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSN 51 (153)
Q Consensus 2 ~~~~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLEr 51 (153)
+|.--||+-|..-+-.||+++..+=|.- ...-+++.+++-+|+.+|-.
T Consensus 106 ~t~~~f~~ll~~it~gDP~dLlieRiEa--nA~~~d~~gSglGLLTlmsD 153 (184)
T COG5381 106 PTTIDFENLLKVITEGDPLDLLIERIEA--NALESDCEGSGLGLLTLMSD 153 (184)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHh--hccCCCCccccccceehhhh
Confidence 4566688888888999999998887742 11222344555667777654
No 134
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.86 E-value=1.8e+02 Score=22.24 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
-+..|..++..+...|+.++|..+.+....-
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999988877653
No 135
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=21.46 E-value=4e+02 Score=20.81 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=64.1
Q ss_pred HHHHHHHhcc-CccccccHH--HHHHHHHHhcccC---------------CHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Q 037765 49 LSNCINTFKH-HSQYKNDIR--FLKIWFLYLEGSK---------------DYEKVFREMEELEICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 49 LErc~~~f~~-~~~Y~nD~R--yLkiWi~Ya~~~~---------------d~~~if~~L~~~~IG~~~AlfYe~wA~~lE 110 (153)
+.+.+..... +-+.-||.| .+..|+.|+.+++ .|.-|++-|.+.|-|.=...-|+....+=+
T Consensus 18 v~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~K~ 97 (156)
T KOG0871|consen 18 VNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENCKE 97 (156)
T ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 4555555555 677888887 4567888877522 588999999999999888888888877766
Q ss_pred HcC-CHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 037765 111 LNG-KWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 111 ~~~-~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
... +..+..+.=..|| |-+.|.+...++.++-..
T Consensus 98 ~~~~~~~kssk~e~~Gi-----~eEEL~~qQqeLf~~ARa 132 (156)
T KOG0871|consen 98 EAKKRRRKSSKFEKSGI-----PEEELLRQQQELFAKARA 132 (156)
T ss_pred HHHHhhhhhhhHHhcCC-----CHHHHHHHHHHHHHHHHH
Confidence 644 4444444444444 566666665555444333
No 136
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=20.55 E-value=2.5e+02 Score=19.37 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHh
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEE 91 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~ 91 (153)
..|+++++.... ..|+.|++.++.=-...-.|.+++..|..
T Consensus 3 ~~Li~~L~~~~~-----~~d~~f~~~FllTyrsF~s~~~ll~~L~~ 43 (122)
T cd06224 3 EALIEHLTSTFD-----MPDPSFVSTFLLTYRSFTTPTELLEKLIE 43 (122)
T ss_pred HHHHHHHcCCCc-----cccHHHHHHHHHHhhhhCCHHHHHHHHHH
Confidence 455666655432 68999999998866666778888877743
No 137
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.07 E-value=68 Score=28.45 Aligned_cols=120 Identities=18% Similarity=0.108 Sum_probs=70.2
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHhc-----------CCC-CCC-----ChhhHHHHHHHHHHHhccCccccc
Q 037765 2 GTAVILPNHDENGAVHDPLLPWLQSAKKALDEW-----------YSG-KDS-----GATDLYKLLSNCINTFKHHSQYKN 64 (153)
Q Consensus 2 ~~~~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~-----------p~g-~~~-----~~~~l~~lLErc~~~f~~~~~Y~n 64 (153)
-|-|-||+.++.-.. .|..+++||+. +-+. -.| +.| .+....-++.|.|.+|-+
T Consensus 35 ktRr~fE~rL~rr~~--klnDf~~YI~y-E~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~------ 105 (435)
T COG5191 35 KTRRKFELRLQRREK--KLNDFMRYIKY-ECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFN------ 105 (435)
T ss_pred HHHHHHHHHHhcccc--hHHHHHHHHHH-HhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCC------
Confidence 355668888876543 58889999975 1111 011 111 011223345566666544
Q ss_pred cHHHHHHHHHHhccc------CCHHHHHHHHHhCCcchHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCC-CcHHH
Q 037765 65 DIRFLKIWFLYLEGS------KDYEKVFREMEELEICTGHSLLYQW-YAIFLELNGKWRDAHMVYQIGISRKA-EPLDK 135 (153)
Q Consensus 65 D~RyLkiWi~Ya~~~------~d~~~if~~L~~~~IG~~~AlfYe~-wA~~lE~~~~~~~A~~I~~~Gi~~~A-~P~~~ 135 (153)
| +++|..|+.+. ..-..||..+..++=- =+..|+- =+.-++..++++-|..+++.|+..+. .|.-+
T Consensus 106 D---~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~--nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 106 D---PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL--NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 4 37888888753 3445666665544311 1233433 34567789999999999999999763 45443
Done!