Query 037765
Match_columns 153
No_of_seqs 105 out of 256
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvi_A Mitotic checkpoint seri 100.0 4.2E-62 1.4E-66 379.0 16.2 146 4-151 3-148 (164)
2 4a1g_A Mitotic checkpoint seri 100.0 3.8E-62 1.3E-66 375.2 13.6 141 5-149 11-151 (152)
3 3esl_A Checkpoint serine/threo 100.0 3.3E-60 1.1E-64 378.5 10.3 148 4-151 12-167 (202)
4 4aez_C MAD3, mitotic spindle c 100.0 3.5E-59 1.2E-63 377.5 15.8 145 5-150 56-202 (223)
5 4h7y_A Dual specificity protei 99.5 4.7E-13 1.6E-17 102.8 13.2 116 21-144 14-139 (161)
6 2ond_A Cleavage stimulation fa 98.0 6.5E-05 2.2E-09 59.6 11.6 117 20-147 8-147 (308)
7 4e6h_A MRNA 3'-END-processing 98.0 5.2E-05 1.8E-09 69.0 11.7 117 20-148 302-448 (679)
8 2ooe_A Cleavage stimulation fa 97.4 0.0041 1.4E-07 52.6 13.8 118 20-148 230-370 (530)
9 4e6h_A MRNA 3'-END-processing 97.1 0.0025 8.5E-08 57.9 9.9 105 7-128 332-463 (679)
10 2ooe_A Cleavage stimulation fa 96.9 0.0061 2.1E-07 51.6 9.9 121 7-145 35-176 (530)
11 2uy1_A Cleavage stimulation fa 96.9 0.013 4.4E-07 50.6 12.0 128 7-147 202-367 (493)
12 2uy1_A Cleavage stimulation fa 96.1 0.02 7E-07 49.4 8.4 79 19-110 171-257 (493)
13 2ond_A Cleavage stimulation fa 95.1 0.47 1.6E-05 36.9 12.3 65 81-147 187-254 (308)
14 3rkv_A Putative peptidylprolyl 90.8 2.4 8.1E-05 29.3 9.2 84 65-150 59-148 (162)
15 2w2u_A Hypothetical P60 katani 89.8 2.4 8.2E-05 28.4 8.1 54 97-150 17-79 (83)
16 3ieg_A DNAJ homolog subfamily 89.4 5.5 0.00019 29.9 10.9 67 79-148 288-354 (359)
17 3edt_B KLC 2, kinesin light ch 89.2 2.1 7.2E-05 31.1 8.2 84 44-128 19-114 (283)
18 2v6y_A AAA family ATPase, P60 88.7 3.3 0.00011 27.5 8.1 53 98-150 10-71 (83)
19 2xev_A YBGF; tetratricopeptide 88.0 3.9 0.00013 26.4 9.1 85 45-130 21-107 (129)
20 3c1d_A Protein ORAA, regulator 87.8 6 0.0002 29.0 9.9 95 47-146 47-142 (159)
21 1elw_A TPR1-domain of HOP; HOP 86.2 4.3 0.00015 25.1 9.1 78 44-132 22-105 (118)
22 3k9i_A BH0479 protein; putativ 86.1 2.1 7.1E-05 28.1 5.9 79 46-132 10-94 (117)
23 2kck_A TPR repeat; tetratricop 85.9 3.9 0.00013 25.2 7.0 80 44-132 24-110 (112)
24 3ma5_A Tetratricopeptide repea 84.9 1.1 3.9E-05 29.0 4.1 62 65-128 3-70 (100)
25 2ho1_A Type 4 fimbrial biogene 84.8 6.6 0.00023 28.3 8.7 49 81-129 123-171 (252)
26 4a5x_A MITD1, MIT domain-conta 84.2 4.6 0.00016 27.1 6.9 54 96-149 13-75 (86)
27 3dfg_A Xcrecx, regulatory prot 84.1 9.7 0.00033 28.0 9.4 92 47-146 49-144 (162)
28 2v6x_A Vacuolar protein sortin 84.0 4 0.00014 26.9 6.6 53 97-149 11-72 (85)
29 3d5l_A Regulatory protein RECX 83.7 11 0.00039 29.0 10.1 92 48-146 94-191 (221)
30 2fbn_A 70 kDa peptidylprolyl i 82.3 11 0.00038 26.7 10.8 121 6-131 19-154 (198)
31 3e3v_A Regulatory protein RECX 81.8 14 0.00048 27.6 9.8 93 47-146 50-148 (177)
32 3nf1_A KLC 1, kinesin light ch 81.6 3.9 0.00013 30.2 6.4 84 44-128 129-224 (311)
33 2cpt_A SKD1 protein, vacuolar 80.8 4.6 0.00016 28.7 6.2 54 96-149 15-78 (117)
34 2fo7_A Synthetic consensus TPR 80.7 4.9 0.00017 25.2 5.9 27 101-127 105-131 (136)
35 1wfd_A Hypothetical protein 15 80.4 6.3 0.00021 26.7 6.6 52 98-149 14-74 (93)
36 2pl2_A Hypothetical conserved 79.6 4.8 0.00016 29.5 6.2 63 66-131 115-183 (217)
37 3edt_B KLC 2, kinesin light ch 79.0 15 0.00052 26.3 10.7 85 43-128 102-198 (283)
38 3ulq_A Response regulator aspa 78.7 19 0.00064 28.2 9.9 79 45-127 283-367 (383)
39 3mkr_A Coatomer subunit epsilo 78.6 21 0.00071 27.6 10.0 66 67-134 167-235 (291)
40 1na0_A Designed protein CTPR3; 78.4 9.6 0.00033 23.6 8.6 77 44-131 27-109 (125)
41 4i17_A Hypothetical protein; T 77.3 6.1 0.00021 28.5 6.2 63 68-130 75-148 (228)
42 3gyz_A Chaperone protein IPGC; 76.8 11 0.00036 26.8 7.2 28 102-129 107-134 (151)
43 2dba_A Smooth muscle cell asso 76.7 9 0.00031 24.9 6.5 80 44-131 46-131 (148)
44 3uq3_A Heat shock protein STI1 76.5 18 0.00061 25.7 8.5 37 94-130 134-170 (258)
45 3as5_A MAMA; tetratricopeptide 75.5 15 0.00052 24.4 7.5 77 44-131 60-142 (186)
46 2ho1_A Type 4 fimbrial biogene 75.0 20 0.00069 25.6 8.8 67 65-133 137-209 (252)
47 2xcb_A PCRH, regulatory protei 74.7 9.9 0.00034 25.6 6.4 69 80-150 69-139 (142)
48 1hh8_A P67PHOX, NCF-2, neutrop 74.7 12 0.00041 26.3 7.1 90 44-142 55-165 (213)
49 3as5_A MAMA; tetratricopeptide 73.3 17 0.00059 24.1 8.0 44 82-127 129-172 (186)
50 2vq2_A PILW, putative fimbrial 72.9 13 0.00044 25.8 6.8 30 99-128 147-176 (225)
51 2vyi_A SGTA protein; chaperone 72.7 14 0.0005 22.9 9.8 78 43-131 29-112 (131)
52 3sz7_A HSC70 cochaperone (SGT) 72.7 20 0.00067 24.4 10.8 96 44-150 29-131 (164)
53 1xnf_A Lipoprotein NLPI; TPR, 72.6 12 0.0004 27.1 6.7 49 81-131 95-143 (275)
54 3nf1_A KLC 1, kinesin light ch 72.5 25 0.00087 25.6 10.5 85 43-128 44-140 (311)
55 4gcn_A Protein STI-1; structur 72.2 10 0.00035 25.4 5.9 36 97-132 81-116 (127)
56 3k9i_A BH0479 protein; putativ 70.8 18 0.00062 23.3 6.8 53 80-132 7-60 (117)
57 2fo7_A Synthetic consensus TPR 70.5 16 0.00056 22.6 8.0 51 80-132 52-102 (136)
58 3q15_A PSP28, response regulat 70.4 36 0.0012 26.6 10.9 47 82-128 319-365 (378)
59 1elr_A TPR2A-domain of HOP; HO 70.4 17 0.00057 22.7 10.0 94 44-148 22-126 (131)
60 2kc7_A BFR218_protein; tetratr 70.3 16 0.00055 22.4 6.4 50 81-132 18-68 (99)
61 3vtx_A MAMA; tetratricopeptide 69.6 5.4 0.00018 27.6 4.1 32 98-129 4-35 (184)
62 1ihg_A Cyclophilin 40; ppiase 69.4 34 0.0012 27.6 9.5 85 44-130 241-338 (370)
63 2kat_A Uncharacterized protein 69.0 19 0.00066 22.8 8.4 48 80-129 36-83 (115)
64 2vgx_A Chaperone SYCD; alterna 68.8 15 0.00053 25.2 6.4 48 80-129 72-119 (148)
65 4h7y_A Dual specificity protei 68.4 7.1 0.00024 29.6 4.6 75 70-146 14-106 (161)
66 2dl1_A Spartin; SPG20, MIT, st 67.3 18 0.00063 25.8 6.4 33 95-127 18-50 (116)
67 2v5f_A Prolyl 4-hydroxylase su 66.9 23 0.00079 23.0 7.2 36 94-129 41-76 (104)
68 2xcb_A PCRH, regulatory protei 66.3 26 0.00089 23.3 8.1 48 81-130 36-83 (142)
69 3gyz_A Chaperone protein IPGC; 65.5 13 0.00044 26.3 5.5 80 48-129 11-100 (151)
70 2lni_A Stress-induced-phosphop 65.3 23 0.00077 22.3 9.2 76 44-130 34-115 (133)
71 2q7f_A YRRB protein; TPR, prot 65.3 33 0.0011 24.1 8.3 48 81-130 109-156 (243)
72 4a1s_A PINS, partner of inscut 64.7 35 0.0012 26.4 8.4 34 96-129 340-373 (411)
73 4gcn_A Protein STI-1; structur 64.7 13 0.00043 24.9 5.1 29 99-127 42-70 (127)
74 3vtx_A MAMA; tetratricopeptide 64.0 32 0.0011 23.5 8.8 32 97-128 139-170 (184)
75 3qky_A Outer membrane assembly 63.9 27 0.00093 25.6 7.2 86 45-131 71-180 (261)
76 3mkr_A Coatomer subunit epsilo 63.3 19 0.00064 27.9 6.4 28 101-128 132-159 (291)
77 4gco_A Protein STI-1; structur 63.1 30 0.001 23.0 8.5 48 80-129 64-111 (126)
78 2y4t_A DNAJ homolog subfamily 62.4 33 0.0011 26.9 7.8 49 80-130 312-360 (450)
79 2r5s_A Uncharacterized protein 61.7 22 0.00075 24.6 6.1 49 82-132 93-141 (176)
80 3ro3_A PINS homolog, G-protein 61.2 29 0.001 22.2 8.1 30 98-127 88-117 (164)
81 2kck_A TPR repeat; tetratricop 60.3 25 0.00087 21.2 6.3 49 81-131 24-72 (112)
82 3uq3_A Heat shock protein STI1 59.8 42 0.0014 23.6 10.2 66 64-131 134-205 (258)
83 3u3w_A Transcriptional activat 59.7 53 0.0018 24.7 9.1 81 45-127 174-265 (293)
84 3upv_A Heat shock protein STI1 59.5 32 0.0011 22.0 8.0 74 45-129 23-102 (126)
85 3fp2_A TPR repeat-containing p 59.2 67 0.0023 25.7 10.3 92 44-137 396-500 (537)
86 2bn5_A PSI; nuclear protein, s 58.6 12 0.0004 21.1 3.1 22 103-124 6-27 (33)
87 4gco_A Protein STI-1; structur 58.3 18 0.00062 24.1 5.0 29 100-128 48-76 (126)
88 2xpi_A Anaphase-promoting comp 58.3 39 0.0013 27.6 7.9 82 44-130 493-581 (597)
89 4a1s_A PINS, partner of inscut 58.2 35 0.0012 26.4 7.2 81 45-128 242-332 (411)
90 2vyi_A SGTA protein; chaperone 57.8 31 0.001 21.3 8.4 48 82-131 31-78 (131)
91 3u4t_A TPR repeat-containing p 57.8 33 0.0011 24.7 6.7 49 80-130 91-139 (272)
92 1a17_A Serine/threonine protei 57.4 33 0.0011 22.5 6.2 51 80-132 64-114 (166)
93 1w3b_A UDP-N-acetylglucosamine 57.3 37 0.0012 26.3 7.2 49 79-129 117-165 (388)
94 3upv_A Heat shock protein STI1 57.2 21 0.00071 23.0 5.0 32 99-130 38-69 (126)
95 3ulq_A Response regulator aspa 56.5 68 0.0023 24.9 9.1 80 46-128 204-293 (383)
96 3u4t_A TPR repeat-containing p 55.6 54 0.0019 23.5 9.6 83 44-130 21-105 (272)
97 2y4t_A DNAJ homolog subfamily 55.5 47 0.0016 26.0 7.6 49 80-130 77-125 (450)
98 3ma5_A Tetratricopeptide repea 54.8 22 0.00075 22.5 4.7 33 99-131 7-39 (100)
99 2r5s_A Uncharacterized protein 54.6 7.7 0.00026 27.1 2.6 73 46-127 94-172 (176)
100 2xpi_A Anaphase-promoting comp 53.8 40 0.0014 27.6 7.2 50 80-129 492-546 (597)
101 2kat_A Uncharacterized protein 53.7 31 0.0011 21.8 5.4 35 98-132 18-52 (115)
102 3urz_A Uncharacterized protein 53.5 58 0.002 23.2 7.7 50 80-131 71-120 (208)
103 2l6j_A TPR repeat-containing p 53.3 21 0.00073 21.9 4.4 30 102-131 41-70 (111)
104 1a17_A Serine/threonine protei 52.9 45 0.0015 21.8 8.8 46 81-126 99-144 (166)
105 1na0_A Designed protein CTPR3; 52.1 38 0.0013 20.6 7.4 48 81-130 27-74 (125)
106 3u3w_A Transcriptional activat 49.1 81 0.0028 23.6 10.6 84 44-127 133-224 (293)
107 3gw4_A Uncharacterized protein 48.8 60 0.0021 22.0 9.0 80 45-127 85-175 (203)
108 2gw1_A Mitochondrial precursor 48.8 75 0.0026 25.1 7.9 52 79-132 55-106 (514)
109 2l6j_A TPR repeat-containing p 48.0 45 0.0015 20.3 7.0 12 81-92 56-67 (111)
110 4g1t_A Interferon-induced prot 47.6 38 0.0013 26.9 5.9 85 45-129 70-168 (472)
111 2pm7_A Protein WEB1, protein t 47.2 60 0.0021 27.4 7.4 117 19-140 225-376 (399)
112 3q15_A PSP28, response regulat 46.6 1E+02 0.0034 23.9 8.9 30 99-128 261-290 (378)
113 3rkv_A Putative peptidylprolyl 46.5 35 0.0012 23.0 5.0 32 97-128 9-40 (162)
114 1wao_1 Serine/threonine protei 46.4 39 0.0013 28.3 6.1 48 80-129 57-104 (477)
115 3ro3_A PINS homolog, G-protein 46.4 54 0.0018 20.8 8.3 29 99-127 49-77 (164)
116 3sf4_A G-protein-signaling mod 46.0 94 0.0032 23.5 9.1 79 46-127 167-255 (406)
117 3eab_A Spastin; spastin, MIT, 43.8 20 0.00069 24.5 3.2 33 95-127 12-47 (89)
118 4gwp_D Mediator of RNA polymer 43.6 17 0.00057 26.2 2.8 33 28-60 82-119 (121)
119 4i17_A Hypothetical protein; T 43.6 83 0.0028 22.1 8.3 81 44-131 25-108 (228)
120 2yhc_A BAMD, UPF0169 lipoprote 43.1 89 0.0031 22.4 7.1 85 44-129 22-126 (225)
121 2qfc_A PLCR protein; TPR, HTH, 42.9 1E+02 0.0035 23.0 8.0 101 45-148 174-287 (293)
122 3sz7_A HSC70 cochaperone (SGT) 42.8 70 0.0024 21.5 6.1 48 82-131 30-77 (164)
123 3qky_A Outer membrane assembly 42.6 56 0.0019 23.8 5.9 86 44-130 33-128 (261)
124 1xi4_A Clathrin heavy chain; a 42.5 1E+02 0.0036 31.0 9.0 71 49-125 1137-1221(1630)
125 4ga2_A E3 SUMO-protein ligase 42.4 52 0.0018 22.3 5.3 79 49-131 13-97 (150)
126 2q7f_A YRRB protein; TPR, prot 41.7 86 0.0029 21.8 7.8 30 99-128 159-188 (243)
127 2gw1_A Mitochondrial precursor 41.6 1.3E+02 0.0043 23.7 11.6 90 45-136 391-486 (514)
128 4gyw_A UDP-N-acetylglucosamine 40.8 44 0.0015 30.1 5.8 46 82-129 96-141 (723)
129 1w3b_A UDP-N-acetylglucosamine 40.8 1.2E+02 0.0041 23.2 10.0 32 98-129 236-267 (388)
130 3gw4_A Uncharacterized protein 40.7 83 0.0028 21.3 6.6 35 94-128 61-95 (203)
131 2crb_A Nuclear receptor bindin 40.2 59 0.002 22.5 5.1 30 97-126 13-42 (97)
132 1xnf_A Lipoprotein NLPI; TPR, 39.9 99 0.0034 21.9 10.2 33 98-130 214-246 (275)
133 2fbn_A 70 kDa peptidylprolyl i 38.6 55 0.0019 22.8 5.1 32 98-129 37-68 (198)
134 4ga2_A E3 SUMO-protein ligase 38.5 59 0.002 22.0 5.1 63 65-129 61-130 (150)
135 2ifu_A Gamma-SNAP; membrane fu 38.2 1.3E+02 0.0044 22.8 9.2 31 98-128 154-184 (307)
136 1qqe_A Vesicular transport pro 38.1 1.3E+02 0.0043 22.6 8.4 32 97-128 75-106 (292)
137 2xev_A YBGF; tetratricopeptide 37.8 57 0.002 20.5 4.7 51 81-131 20-71 (129)
138 1hxi_A PEX5, peroxisome target 37.7 83 0.0028 20.4 6.1 75 44-129 35-115 (121)
139 1elr_A TPR2A-domain of HOP; HO 37.6 70 0.0024 19.6 7.4 48 80-129 21-68 (131)
140 3urz_A Uncharacterized protein 36.2 1.1E+02 0.0039 21.6 7.6 33 100-132 55-87 (208)
141 3mv2_B Coatomer subunit epsilo 35.6 54 0.0019 26.7 5.1 47 82-130 85-131 (310)
142 1elw_A TPR1-domain of HOP; HOP 35.6 72 0.0024 19.1 7.1 50 80-131 21-70 (118)
143 4h62_V Mediator of RNA polymer 35.5 30 0.001 18.6 2.4 19 42-60 11-29 (31)
144 3ikm_A DNA polymerase subunit 34.9 13 0.00044 36.1 1.3 50 22-77 373-422 (1172)
145 1qqe_A Vesicular transport pro 34.2 79 0.0027 23.8 5.7 34 98-131 157-190 (292)
146 2q2k_A Hypothetical protein; p 33.9 49 0.0017 20.9 3.6 35 80-114 34-68 (70)
147 3ieg_A DNAJ homolog subfamily 33.5 1.4E+02 0.0048 21.8 8.3 76 44-130 21-102 (359)
148 1hh8_A P67PHOX, NCF-2, neutrop 33.4 1.2E+02 0.004 20.9 6.1 48 80-129 54-101 (213)
149 2dba_A Smooth muscle cell asso 33.3 92 0.0032 19.7 7.2 34 98-131 64-97 (148)
150 2vq2_A PILW, putative fimbrial 32.4 1.2E+02 0.004 20.6 10.8 51 81-131 95-145 (225)
151 2ymb_A MITD1, MIT domain-conta 32.4 9.5 0.00032 30.8 0.0 61 88-148 8-81 (257)
152 1yqf_A Hypothetical protein LM 32.0 49 0.0017 25.2 4.1 30 83-112 160-189 (203)
153 2pl2_A Hypothetical conserved 31.9 67 0.0023 23.1 4.7 48 80-129 101-148 (217)
154 3cv0_A Peroxisome targeting si 31.8 1.5E+02 0.005 21.5 7.9 48 81-130 73-120 (327)
155 3ax2_A Mitochondrial import re 31.1 1.1E+02 0.0037 19.8 5.4 34 105-138 23-56 (73)
156 3jv1_A P22 protein; MAM33 fami 30.4 52 0.0018 24.6 3.9 30 83-112 139-168 (182)
157 3qww_A SET and MYND domain-con 29.0 72 0.0025 26.8 5.0 83 44-127 316-410 (433)
158 3qou_A Protein YBBN; thioredox 28.7 1.9E+02 0.0063 21.8 7.8 36 97-132 217-252 (287)
159 1p32_A Mitochondrial matrix pr 28.5 57 0.002 24.9 3.9 30 83-112 164-193 (209)
160 2hr2_A Hypothetical protein; a 28.5 84 0.0029 23.0 4.7 32 96-127 8-39 (159)
161 2c2l_A CHIP, carboxy terminus 28.4 1.9E+02 0.0064 21.7 7.1 47 99-145 38-84 (281)
162 3r45_C Holliday junction recog 28.4 36 0.0012 22.6 2.3 20 134-153 21-40 (81)
163 3qou_A Protein YBBN; thioredox 28.0 44 0.0015 25.4 3.2 62 66-127 216-283 (287)
164 4g1t_A Interferon-induced prot 27.7 1.1E+02 0.0036 24.2 5.5 34 94-127 89-122 (472)
165 3q49_B STIP1 homology and U bo 27.4 1.2E+02 0.0041 19.1 11.2 75 44-129 27-107 (137)
166 1hxi_A PEX5, peroxisome target 26.3 1.3E+02 0.0046 19.3 5.4 50 80-131 34-83 (121)
167 2vgx_A Chaperone SYCD; alterna 26.0 1.5E+02 0.0052 19.9 9.5 48 80-129 38-85 (148)
168 4g26_A Pentatricopeptide repea 25.9 1.3E+02 0.0044 25.5 6.0 53 80-133 122-174 (501)
169 3ly7_A Transcriptional activat 25.8 2.9E+02 0.01 23.0 9.1 84 47-133 258-344 (372)
170 3mv2_B Coatomer subunit epsilo 25.7 1.9E+02 0.0064 23.4 6.8 53 70-126 182-238 (310)
171 2ifu_A Gamma-SNAP; membrane fu 25.5 2.2E+02 0.0074 21.5 9.6 79 45-126 134-222 (307)
172 2yhc_A BAMD, UPF0169 lipoprote 25.5 96 0.0033 22.2 4.6 34 98-131 146-179 (225)
173 1xi4_A Clathrin heavy chain; a 25.1 1.7E+02 0.0059 29.5 7.3 50 98-148 1279-1344(1630)
174 4g26_A Pentatricopeptide repea 25.1 1.5E+02 0.0053 25.0 6.4 53 81-134 88-140 (501)
175 2dwk_A Protein RUFY3; RUN doma 25.0 25 0.00085 26.3 1.2 58 51-110 88-145 (180)
176 3n71_A Histone lysine methyltr 24.6 95 0.0033 26.5 5.0 84 43-127 326-421 (490)
177 2lni_A Stress-induced-phosphop 24.6 1.3E+02 0.0044 18.5 6.5 33 99-131 50-82 (133)
178 4gyw_A UDP-N-acetylglucosamine 24.3 91 0.0031 28.0 5.0 29 100-128 44-72 (723)
179 1ihg_A Cyclophilin 40; ppiase 23.7 2.8E+02 0.0095 22.1 7.8 38 94-131 268-305 (370)
180 3cv0_A Peroxisome targeting si 23.6 2.1E+02 0.0072 20.6 8.6 34 98-131 54-87 (327)
181 1p5q_A FKBP52, FK506-binding p 23.3 2.6E+02 0.0088 21.7 7.0 48 98-145 195-242 (336)
182 3ffl_A Anaphase-promoting comp 23.1 1.4E+02 0.0048 22.3 5.1 62 53-127 27-91 (167)
183 3qww_A SET and MYND domain-con 23.1 1E+02 0.0035 25.8 4.8 36 92-127 330-368 (433)
184 1na3_A Designed protein CTPR2; 23.1 1.2E+02 0.004 17.5 8.3 48 82-131 28-75 (91)
185 2if4_A ATFKBP42; FKBP-like, al 21.8 2.3E+02 0.008 22.0 6.5 48 80-129 247-294 (338)
186 3cax_A Uncharacterized protein 21.6 3.1E+02 0.011 22.0 7.4 103 44-152 23-138 (369)
187 3ub0_A Non-structural protein 21.3 1E+02 0.0034 23.9 4.0 24 114-138 18-41 (199)
188 2zan_A Vacuolar protein sortin 21.3 20 0.00068 30.2 0.0 52 98-149 10-71 (444)
189 3qwp_A SET and MYND domain-con 20.9 1.3E+02 0.0044 25.0 5.0 31 97-127 369-399 (429)
190 3qv0_A Mitochondrial acidic pr 20.2 1.1E+02 0.0037 24.0 4.1 30 83-112 184-213 (227)
191 1ouv_A Conserved hypothetical 20.1 2.5E+02 0.0085 20.2 7.7 45 81-129 96-144 (273)
No 1
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=100.00 E-value=4.2e-62 Score=379.03 Aligned_cols=146 Identities=21% Similarity=0.337 Sum_probs=139.5
Q ss_pred ccccccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHH
Q 037765 4 AVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYE 83 (153)
Q Consensus 4 ~~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~ 83 (153)
-++||++|.+++|||||++|++||+|++++||+|+ ++|+|.+||||||++|+++++|+||+|||||||+||++|+||.
T Consensus 3 r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~--~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~ 80 (164)
T 2wvi_A 3 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGG--KESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPL 80 (164)
T ss_dssp THHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCC--ccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHH
Confidence 36799999999999999999999999999999975 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhh
Q 037765 84 KVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERL 151 (153)
Q Consensus 84 ~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~ 151 (153)
+||+||+++|||+++|+||++||.++|..|++++|++||++||+++|+|+++|+++|++|+.||++++
T Consensus 81 ~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~ 148 (164)
T 2wvi_A 81 DMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQT 148 (164)
T ss_dssp HHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876
No 2
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=100.00 E-value=3.8e-62 Score=375.20 Aligned_cols=141 Identities=30% Similarity=0.402 Sum_probs=135.6
Q ss_pred cccccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHHH
Q 037765 5 VILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEK 84 (153)
Q Consensus 5 ~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~ 84 (153)
++||++|++|+|||||++|++||+|++++||+|+ ++|.+||||||++|+++++|+||+|||||||+||++|+||.+
T Consensus 11 ~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~----~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~ 86 (152)
T 4a1g_A 11 QMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK----EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQ 86 (152)
T ss_dssp HHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT----HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc----hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHH
Confidence 4899999999999999999999999999999863 359999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 037765 85 VFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 85 if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~ 149 (153)
||+||+++|||+++|+||++||.++|.+|++++|++||++||+++|+|+++|+++|++|++||+.
T Consensus 87 if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~~~ 151 (152)
T 4a1g_A 87 FFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRLTE 151 (152)
T ss_dssp HHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 3
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-60 Score=378.54 Aligned_cols=148 Identities=24% Similarity=0.404 Sum_probs=142.1
Q ss_pred cccccccccc--CCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHH-HHHHHHHHHhccCccccccHHHHHHHHHHhcc--
Q 037765 4 AVILPNHDEN--GAVHDPLLPWLQSAKKALDEWYSGKDSGATDLY-KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG-- 78 (153)
Q Consensus 4 ~~~~e~~i~~--~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~-~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~-- 78 (153)
-++||.+|.+ ++|||||++|++||+|++++||+|+++++|+|. +||||||++|+++++|+||+|||||||+||++
T Consensus 12 r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~ 91 (202)
T 3esl_A 12 KIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLFL 91 (202)
T ss_dssp HHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhhc
Confidence 3579999999 999999999999999999999998765689999 99999999999999999999999999999999
Q ss_pred cC---CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhh
Q 037765 79 SK---DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERL 151 (153)
Q Consensus 79 ~~---d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~ 151 (153)
++ +|.+||+||+++|||+++|+||++||.++|.+|++++|++||++||+++|+|+++|+++|++|++||++.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R~~~~~ 167 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDRLREMN 167 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhcC
Confidence 66 99999999999999999999999999999999999999999999999999999999999999999998864
No 4
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-59 Score=377.51 Aligned_cols=145 Identities=28% Similarity=0.521 Sum_probs=139.3
Q ss_pred ccccccccc-CCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHH
Q 037765 5 VILPNHDEN-GAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYE 83 (153)
Q Consensus 5 ~~~e~~i~~-~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~ 83 (153)
++||.+|.+ ++|||||++|++||+|++++||+|+ +++|+|.+||||||++|+++++|+||+|||||||+||++|++|.
T Consensus 56 ~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~-~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~ 134 (223)
T 4aez_C 56 MGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGE-TKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPV 134 (223)
T ss_dssp HHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCC-CTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCC-cchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHH
Confidence 569999999 6899999999999999999999875 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH-HHHh
Q 037765 84 KVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDR-LSER 150 (153)
Q Consensus 84 ~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R-~~~~ 150 (153)
+||+||+++|||+++|+||++||.++|.+|++++|++||++||+++|+|+++|+++|.+|++| |..+
T Consensus 135 ~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~~~~~ 202 (223)
T 4aez_C 135 ELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHRWLEFA 202 (223)
T ss_dssp HHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999 5544
No 5
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.49 E-value=4.7e-13 Score=102.82 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh-----hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc-----cCCHHHHHHHHH
Q 037765 21 LPWLQSAKKALDEWYSGKDSGA-----TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG-----SKDYEKVFREME 90 (153)
Q Consensus 21 ~~w~~yI~w~~e~~p~g~~~~~-----~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~-----~~d~~~if~~L~ 90 (153)
|.|+.|+.-++.+ | + ++ ..+.++.||++....-+. ++...||+.|||.||.+ .++.+++|+.+.
T Consensus 14 d~W~~yl~llE~~---g-~-p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 14 EDWLSLLLKLEKN---S-V-PLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp HHHHHHHHHHHHH---T-C-SCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHc---C-C-CchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7899999987765 3 1 21 456778899999877775 99999999999999986 345689999998
Q ss_pred hCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037765 91 ELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFI 144 (153)
Q Consensus 91 ~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~ 144 (153)
+. +.++|.+|..||++-.++|+..+|.+|+..||-.+|.|.+.|+.+.++.+
T Consensus 88 ~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 88 AN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 85 99999999999999999999999999999999999999999999988876
No 6
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.02 E-value=6.5e-05 Score=59.56 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCh---hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc-----------------
Q 037765 20 LLPWLQSAKKALDEWYSGKDSGA---TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS----------------- 79 (153)
Q Consensus 20 L~~w~~yI~w~~e~~p~g~~~~~---~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~----------------- 79 (153)
+..|..||+| +.+-|.+.+... .....++++|+... |.+..+|+.|+...
T Consensus 8 ~~~W~~yi~~-E~~~~~~~~~~~~~~~~a~~~~~~al~~~---------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~ 77 (308)
T 2ond_A 8 VDMWKKYIQW-EKSNPLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77 (308)
T ss_dssp HHHHHHHHHH-HHTCTTCCCCHHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHH-HHhCcccCCchHHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHhchhhhhccchhhcc
Confidence 5789999999 545465422211 23446778887653 55678999988753
Q ss_pred ---CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 037765 80 ---KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRL 147 (153)
Q Consensus 80 ---~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~ 147 (153)
+++..+|.--... +....+..|..++.+++..|++++|.++|+++++....-.+.+...+..|..|.
T Consensus 78 ~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 78 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence 2355666555442 345678899999999999999999999999999854321222455555665554
No 7
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.99 E-value=5.2e-05 Score=68.96 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCC--hhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc------CCHH-HHHHHHH
Q 037765 20 LLPWLQSAKKALDEWYSGKDSG--ATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS------KDYE-KVFREME 90 (153)
Q Consensus 20 L~~w~~yI~w~~e~~p~g~~~~--~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~------~d~~-~if~~L~ 90 (153)
+..|..||.| +..-|.+-... ..-+..++|+|+..+.. +=++|+.||++. ++.. +||.--.
T Consensus 302 l~lW~~yi~f-Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~---------~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 302 LLIWLEWIRW-ESDNKLELSDDLHKARMTYVYMQAAQHVCF---------APEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp HHHHHHHHHH-HHTCTTCCCHHHHHHHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCccccchhhHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7899999999 44445431110 11245689999998755 458999999863 3454 7775544
Q ss_pred hCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCc------------HHHHHHHHHHHHHHHH
Q 037765 91 ELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK---------AEP------------LDKLEEALALFIDRLS 148 (153)
Q Consensus 91 ~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~---------A~P------------~~~L~~~~~~F~~R~~ 148 (153)
. ..-....+|..||.+.|..|++++|.+||...+..- ..| ...+--.+..|++|..
T Consensus 372 ~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 372 Q--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 2 223467899999999999999999999999999741 124 3446666778887754
No 8
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.38 E-value=0.0041 Score=52.63 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCC---hhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccC----------------
Q 037765 20 LLPWLQSAKKALDEWYSGKDSG---ATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSK---------------- 80 (153)
Q Consensus 20 L~~w~~yI~w~~e~~p~g~~~~---~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~---------------- 80 (153)
+..|..||.|-..+ |.+.... ......++++|+..+.+ +..+|+.|+.+..
T Consensus 230 ~~~w~~~~~~e~~~-~~~~~~~~~~~~~a~~~y~~al~~~p~---------~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 230 VDMWKKYIQWEKSN-PLRTEDQTLITKRVMFAYEQCLLVLGH---------HPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp HHHHHHHHHHHHHC-SSCCSCSHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHcC-CccCCcchhHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 68999999995543 4321111 12456789999987543 3689999987632
Q ss_pred ----CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 037765 81 ----DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLS 148 (153)
Q Consensus 81 ----d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~ 148 (153)
++.++|.--.. .+-...+..|..++.+++..|++++|.++|+++++....-...+--.+..|..|..
T Consensus 300 ~~~~~A~~~~~~Al~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 300 LFSDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp HHHHHHHHHHHHHTT-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc
Confidence 34566655443 13356789999999999999999999999999999653312245666666666543
No 9
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.10 E-value=0.0025 Score=57.91 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=71.5
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHH-HHHHHHHHHhccCccccccHHHHHHHHHHhcc------c
Q 037765 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLY-KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------S 79 (153)
Q Consensus 7 ~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~-~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~ 79 (153)
+|.++..-. .+ =+.|+.|++|...+ |.. .... .+|+|++..+-++ ..||+.||++ .
T Consensus 332 Ye~aL~~~p-~~-~~lW~~ya~~~~~~---~~~---~~a~r~il~rAi~~~P~s---------~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 332 YMQAAQHVC-FA-PEIWFNMANYQGEK---NTD---STVITKYLKLGQQCIPNS---------AVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHTT-TC-HHHHHHHHHHHHHH---SCC---TTHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcC-CC-HHHHHHHHHHHHhc---CcH---HHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCCH
Confidence 555554322 22 37899999997765 321 2344 8999999765332 4789988875 2
Q ss_pred CCHHHHHHHHHhCC----------cc----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 80 KDYEKVFREMEELE----------IC----------TGHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 80 ~d~~~if~~L~~~~----------IG----------~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
+..++||.-+.... +. ...+..|..++.+....|+.+.|.+||.++++.
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34677887776531 11 136678888888888888888999999888876
No 10
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.87 E-value=0.0061 Score=51.56 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=80.6
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc-------c
Q 037765 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG-------S 79 (153)
Q Consensus 7 ~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~-------~ 79 (153)
||.+++... +--..|..|+.+.... | .-.....+++||+... + + +.+|+.|+++ .
T Consensus 35 ~e~al~~~P--~~~~~w~~~~~~~~~~---~---~~~~a~~~~~ral~~~---p----~---~~lw~~~~~~~~~~~~~~ 96 (530)
T 2ooe_A 35 YERLVAQFP--SSGRFWKLYIEAEIKA---K---NYDKVEKLFQRCLMKV---L----H---IDLWKCYLSYVRETKGKL 96 (530)
T ss_dssp HHHHHTTCT--TCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHTTTC---C----C---HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHCC--CCHHHHHHHHHHHHhc---C---CHHHHHHHHHHHHhcC---C----C---hHHHHHHHHHHHHHccch
Confidence 566665432 2246799999886543 2 3356788888888763 2 2 4579999863 2
Q ss_pred CCHHH----HHHHHHhC-CcchHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 037765 80 KDYEK----VFREMEEL-EICTGHSLLYQWYAIFLEL---------NGKWRDAHMVYQIGISRKAEPLDKLEEALALFID 145 (153)
Q Consensus 80 ~d~~~----if~~L~~~-~IG~~~AlfYe~wA~~lE~---------~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~ 145 (153)
++.++ +|...... |.-.....+|..++.++.. .|++++|..+|+++++.--.+...+-..+..|..
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 34444 66655432 2223467899999998876 7899999999999999534455666667777753
No 11
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.86 E-value=0.013 Score=50.63 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=71.2
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCcc-------c-----------------
Q 037765 7 LPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQ-------Y----------------- 62 (153)
Q Consensus 7 ~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~-------Y----------------- 62 (153)
+|.++.... ..-++|+.|++|..++ | .......+++|++.. .++.. +
T Consensus 202 ye~al~~~p--~~~~lW~~ya~~~~~~---~---~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 202 HNYILDSFY--YAEEVYFFYSEYLIGI---G---QKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 555555332 2368899999997754 3 234578899999987 43320 0
Q ss_pred c-------ccHHHHHHHHHHhccc------CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC
Q 037765 63 K-------NDIRFLKIWFLYLEGS------KDYEKVFREMEELEICTGHSLLYQWYAIFLELNG-KWRDAHMVYQIGISR 128 (153)
Q Consensus 63 ~-------nD~RyLkiWi~Ya~~~------~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~-~~~~A~~I~~~Gi~~ 128 (153)
. .....-++|+.|+++. +.++.||.-....+ ..+..|..||.+....+ +.+.|.+||+.|++.
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~---~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG---VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC---CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 0112336677776652 23456666552111 24556777776555544 477777777777764
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 037765 129 KAEPLDKLEEALALFIDRL 147 (153)
Q Consensus 129 ~A~P~~~L~~~~~~F~~R~ 147 (153)
-..-.+ +.-.|.+|+..+
T Consensus 350 ~~~~~~-~~~~yid~e~~~ 367 (493)
T 2uy1_A 350 HPDSTL-LKEEFFLFLLRI 367 (493)
T ss_dssp CTTCHH-HHHHHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHc
Confidence 433222 223356665443
No 12
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.09 E-value=0.02 Score=49.37 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCC--hhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc---C---CHHHHHHHHH
Q 037765 19 PLLPWLQSAKKALDEWYSGKDSG--ATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS---K---DYEKVFREME 90 (153)
Q Consensus 19 PL~~w~~yI~w~~e~~p~g~~~~--~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~---~---d~~~if~~L~ 90 (153)
.++.|..|+.| +.+.|.|..+. ...+..++|+|+..+... -++|+.||.+. . .+++||.--.
T Consensus 171 s~~~W~~y~~~-E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~---------~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 171 SVKNAARLIDL-EMENGMKLGGRPHESRMHFIHNYILDSFYYA---------EEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp SHHHHHHHHHH-HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-HhcCCccCcchhhHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45799999999 44556542211 123567999999987433 68999999862 2 3567776666
Q ss_pred hCCcchHHHHHHHHHHHHHH
Q 037765 91 ELEICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 91 ~~~IG~~~AlfYe~wA~~lE 110 (153)
.. -....+|..++.+.|
T Consensus 241 ~~---P~~~~l~~~y~~~~e 257 (493)
T 2uy1_A 241 EM---SDGMFLSLYYGLVMD 257 (493)
T ss_dssp HH---CCSSHHHHHHHHHTT
T ss_pred hC---CCcHHHHHHHHhhcc
Confidence 55 233456777777644
No 13
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.10 E-value=0.47 Score=36.95 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-Cc--HHHHHHHHHHHHHHH
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA-EP--LDKLEEALALFIDRL 147 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A-~P--~~~L~~~~~~F~~R~ 147 (153)
.+..+|.-.... -...+.+|..++.++...|++++|..+|++++..+. .| ...+-..+..|..+.
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 345666555442 234578888999999889999999999999998642 33 244555666665543
No 14
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.82 E-value=2.4 Score=29.30 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHH
Q 037765 65 DIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEE 138 (153)
Q Consensus 65 D~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~ 138 (153)
|+....+|...+.. .+++...|...... ....+..|-.-|..+...|++++|...|+.++.-...-...+..
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 136 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 56666777766543 23455666555543 45566677788899999999999999999999986444345566
Q ss_pred HHHHHHHHHHHh
Q 037765 139 ALALFIDRLSER 150 (153)
Q Consensus 139 ~~~~F~~R~~~~ 150 (153)
.......++.+.
T Consensus 137 ~l~~~~~~~~~~ 148 (162)
T 3rkv_A 137 EMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 15
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=89.81 E-value=2.4 Score=28.36 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHh
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS---------RKAEPLDKLEEALALFIDRLSER 150 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~---------~~A~P~~~L~~~~~~F~~R~~~~ 150 (153)
+-|.-+..=|.-.++.|++++|...|+.||+ .+..=.+.++.+..+...|.+..
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~L 79 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVL 79 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778889999999999999999998 22333566899999999998754
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=89.35 E-value=5.5 Score=29.89 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 037765 79 SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLS 148 (153)
Q Consensus 79 ~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~ 148 (153)
.+++.++|.-.... ....+..|...|..+...|++++|.+.|+.+++....- ..+..........+.
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 288 PVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHH
Confidence 34567777777664 45567788899999999999999999999999876332 223344444444443
No 17
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.24 E-value=2.1 Score=31.06 Aligned_cols=84 Identities=8% Similarity=0.114 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhC------CcchHHHHHHHHHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEEL------EICTGHSLLYQWYAIFLEL 111 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~------~IG~~~AlfYe~wA~~lE~ 111 (153)
.=..++++++..+..... .+++....+|...+.. .+++.+.|.-.... +--...+..|...|..+..
T Consensus 19 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SHHHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 346777788877754422 2446777777776653 23456666655543 2235667888999999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 037765 112 NGKWRDAHMVYQIGISR 128 (153)
Q Consensus 112 ~~~~~~A~~I~~~Gi~~ 128 (153)
.|++++|.+.|++++..
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEI 114 (283)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 99999999999999985
No 18
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=88.66 E-value=3.3 Score=27.51 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHh
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGIS---------RKAEPLDKLEEALALFIDRLSER 150 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~---------~~A~P~~~L~~~~~~F~~R~~~~ 150 (153)
-|.-+..=|.-.++.|+|++|...|..||+ .+..=.+.++.+..+...|....
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~L 71 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYL 71 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778888999999999999999998 22333566899999999998754
No 19
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=88.00 E-value=3.9 Score=26.43 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcchH-HHHHHHHHHHHHHHcCCHHHHHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLE-GSKDYEKVFREMEELEICTG-HSLLYQWYAIFLELNGKWRDAHMVY 122 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~-~~~d~~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~~~~~~A~~I~ 122 (153)
-...+++++....+++ +..+..|..-.+.+.. ..+++.+.|..+....-... .+..+...|..+...|++++|...|
T Consensus 21 A~~~~~~~~~~~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 99 (129)
T 2xev_A 21 ASQLFLSFLELYPNGV-YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTL 99 (129)
T ss_dssp HHHHHHHHHHHCSSST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566666666544322 2222333322222221 23456777777766543331 1455666788888999999999999
Q ss_pred HHHHhCCC
Q 037765 123 QIGISRKA 130 (153)
Q Consensus 123 ~~Gi~~~A 130 (153)
+..++...
T Consensus 100 ~~~~~~~p 107 (129)
T 2xev_A 100 QQVATQYP 107 (129)
T ss_dssp HHHHHHST
T ss_pred HHHHHHCC
Confidence 99998763
No 20
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=87.85 E-value=6 Score=29.02 Aligned_cols=95 Identities=9% Similarity=-0.060 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG-SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIG 125 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~-~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~G 125 (153)
+.++.++..+. ...|-||.||...|+...-. ---|..|-.-|..+||...+..= +.+.+- ..-...|.++.++=
T Consensus 47 ~~i~~vl~~l~-~~g~ldD~rfA~~~v~~~~~~g~G~~~I~~eL~~KGI~~~~i~~--al~~~~--~d~~~~a~~l~~kk 121 (159)
T 3c1d_A 47 EDYERVIAWCH-EHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEK--AMREAD--IDWAALARDQATRK 121 (159)
T ss_dssp HHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHH--HHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCcCHHHHHHHHHHHHHhCCccHHHHHHHHHHcCCCHHHHHH--HHHHcC--HhHHHHHHHHHHHH
Confidence 44555555553 34699999999999986532 23589999999999999876431 112111 12234566666554
Q ss_pred HhCCCCcHHHHHHHHHHHHHH
Q 037765 126 ISRKAEPLDKLEEALALFIDR 146 (153)
Q Consensus 126 i~~~A~P~~~L~~~~~~F~~R 146 (153)
......+-...+++...|..|
T Consensus 122 ~~~~~~~~~~~~~K~~~~L~r 142 (159)
T 3c1d_A 122 YGEPLPTVFSEKVKIQRFLLY 142 (159)
T ss_dssp HCSSCCCSHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 433222223455666666654
No 21
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=86.19 E-value=4.3 Score=25.12 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++....++ ..+|...+.. .+++.+.|.-.... ....+..|...|..+...|++++
T Consensus 22 ~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~ 90 (118)
T 1elw_A 22 DALQCYSEAIKLDPHN---------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNRFEE 90 (118)
T ss_dssp HHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCCCc---------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHH
Confidence 4466777777654322 3344444432 23455666655553 34456778889999999999999
Q ss_pred HHHHHHHHHhCCCCc
Q 037765 118 AHMVYQIGISRKAEP 132 (153)
Q Consensus 118 A~~I~~~Gi~~~A~P 132 (153)
|.+.|+.+++.....
T Consensus 91 A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 91 AKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999876544
No 22
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.12 E-value=2.1 Score=28.12 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHH
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAH 119 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~ 119 (153)
...+++++..- .+||....+|...+.. .+++...|.-..... ...+..|...+..+...|++++|.
T Consensus 10 ~~~~~~al~~~------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 10 VPYYEKAIASG------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp HHHHHHHHSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcC------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666531 2378888888887763 335667777766544 344677778899999999999999
Q ss_pred HHHHHHHhCCCCc
Q 037765 120 MVYQIGISRKAEP 132 (153)
Q Consensus 120 ~I~~~Gi~~~A~P 132 (153)
+.|++++......
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 9999999875443
No 23
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=85.90 E-value=3.9 Score=25.16 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHc-CCHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELN-GKWR 116 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~-~~~~ 116 (153)
.-...+++++....++ ..+|..++.. .+++...|.......-....+..|...|..+... |+++
T Consensus 24 ~A~~~~~~a~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (112)
T 2kck_A 24 ESIDLFEKAIQLDPEE---------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEV 94 (112)
T ss_dssp HHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSH
T ss_pred HHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHH
Confidence 4466677777654322 2234444332 3456677777776544322567788889999999 9999
Q ss_pred HHHHHHHHHHhCCCCc
Q 037765 117 DAHMVYQIGISRKAEP 132 (153)
Q Consensus 117 ~A~~I~~~Gi~~~A~P 132 (153)
+|.+.++.++.....+
T Consensus 95 ~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 95 EAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999876543
No 24
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=84.94 E-value=1.1 Score=28.95 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 65 DIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 65 D~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
||....+|...+.. .+++...|.-..... ...+..|...|..+...|++++|.+.|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444455555442 234566666666543 344556777889999999999999999999974
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=84.83 E-value=6.6 Score=28.34 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
++.++|.-+...+.....+..|...|..+...|++++|.++|+.+++..
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455565555533445556666666777777777777777777776644
No 26
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.18 E-value=4.6 Score=27.10 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCc--HHHHHHHHHHHHHHHHH
Q 037765 96 TGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS-------RKAEP--LDKLEEALALFIDRLSE 149 (153)
Q Consensus 96 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-------~~A~P--~~~L~~~~~~F~~R~~~ 149 (153)
+.-|..+..=|.-.+..|++++|...|..||+ ....| .+.|.++-.+...|.+.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~ 75 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888899999999999999999987 33344 35677778888888654
No 27
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=84.10 E-value=9.7 Score=28.03 Aligned_cols=92 Identities=9% Similarity=0.050 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG-SKDYEKVFREMEELEICTGHSLLYQWYAIFLEL--NGKWRDAHMVYQ 123 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~-~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~--~~~~~~A~~I~~ 123 (153)
++++.++.++.. ..|-||.||.+.|+.-.-. ---|..|-.-|..+||...+.. ..++. ..-.+.|.++.+
T Consensus 49 e~Ie~vl~~l~~-~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~I~------~al~~~~~de~e~a~~l~~ 121 (162)
T 3dfg_A 49 EAAQAAVERLAG-EGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAVS------AAMATFEGDWTENALDLIR 121 (162)
T ss_dssp HHHHHHHHHHHH-TTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHH------HHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHHHH------HHHHhCcHhHHHHHHHHHH
Confidence 356667777644 4699999999999986533 2458999999999999987653 22222 122445666665
Q ss_pred HHHhCCCCcH-HHHHHHHHHHHHH
Q 037765 124 IGISRKAEPL-DKLEEALALFIDR 146 (153)
Q Consensus 124 ~Gi~~~A~P~-~~L~~~~~~F~~R 146 (153)
+=... ..|. ...+++...|+.|
T Consensus 122 Kk~~~-~~~~~~~~k~K~~~~L~r 144 (162)
T 3dfg_A 122 RRFGE-DGPVDLAQRRKAADLLAR 144 (162)
T ss_dssp HHHCT-TCCCSHHHHHHHHHHHHH
T ss_pred HhcCC-CCCCCHHHHHHHHHHHHH
Confidence 53332 2232 2455556566654
No 28
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=84.00 E-value=4 Score=26.92 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCc--HHHHHHHHHHHHHHHHH
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISR-------KAEP--LDKLEEALALFIDRLSE 149 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~-------~A~P--~~~L~~~~~~F~~R~~~ 149 (153)
.-|..+..=|.-.+..|++++|...|..||+- ...| .+.|..+..+...|...
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~ 72 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQ 72 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888899999999999999999882 2233 35588888888888765
No 29
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=83.73 E-value=11 Score=29.04 Aligned_cols=92 Identities=10% Similarity=0.025 Sum_probs=57.5
Q ss_pred HHHHHHHHhccCccccccHHHHHHHHHHhcc--cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHc---CCHHHHHHHH
Q 037765 48 LLSNCINTFKHHSQYKNDIRFLKIWFLYLEG--SKDYEKVFREMEELEICTGHSLLYQWYAIFLELN---GKWRDAHMVY 122 (153)
Q Consensus 48 lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~--~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~---~~~~~A~~I~ 122 (153)
.++.++.++. ...|-||.||.+.|+...-. ---|..|-.-|..+||...+.. ..++.. .-...|.++.
T Consensus 94 ~i~~vl~~L~-~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~------~al~~~~~~~e~e~a~~l~ 166 (221)
T 3d5l_A 94 FVEPILKKLR-GQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDID------DALTQFTPEVQAELAKKLA 166 (221)
T ss_dssp HHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHH------HHGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHH------HHHHhCCHHHHHHHHHHHH
Confidence 4455555543 34699999999999987543 3469999999999999987653 111211 1123444555
Q ss_pred HHHHhC-CCCcHHHHHHHHHHHHHH
Q 037765 123 QIGISR-KAEPLDKLEEALALFIDR 146 (153)
Q Consensus 123 ~~Gi~~-~A~P~~~L~~~~~~F~~R 146 (153)
++=... ...|....+++...|+.|
T Consensus 167 ~Kk~~~~~~~~~~~~k~K~~~~L~r 191 (221)
T 3d5l_A 167 LKLFRRYRNQPERRREQKVQQGLTT 191 (221)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCChHHHHHHHHHHHHh
Confidence 444332 233555667777777655
No 30
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=82.32 E-value=11 Score=26.68 Aligned_cols=121 Identities=5% Similarity=-0.057 Sum_probs=67.9
Q ss_pred ccccccccCCCCCC--cHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCcccccc-------HHHHHHHHHHh
Q 037765 6 ILPNHDENGAVHDP--LLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKND-------IRFLKIWFLYL 76 (153)
Q Consensus 6 ~~e~~i~~~~~dDP--L~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD-------~RyLkiWi~Ya 76 (153)
.||.+.+.++.+.+ +..-..+.......+-.| .-..-...+++++....+++.+... .--..+|...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKN---EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ---CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 46666666654432 222222332222222222 2234567788888877666544433 00023444433
Q ss_pred c----c--cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 77 E----G--SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 77 ~----~--~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
. . .+++...|...... ....+..|...|..+...|++++|.+.|+.+++....
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 3 2 23455666655543 4456677888899999999999999999999987543
No 31
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=81.84 E-value=14 Score=27.58 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHhcc--cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHc---CCHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG--SKDYEKVFREMEELEICTGHSLLYQWYAIFLELN---GKWRDAHMV 121 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~--~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~---~~~~~A~~I 121 (153)
++++.++.++.. ..|-||.||.+.|+...-. ---|..|-.-|..+||...+..= .++.. .-++.|..+
T Consensus 50 ~~ie~vl~~L~~-~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~------al~~~~~~de~e~a~~l 122 (177)
T 3e3v_A 50 DYISEIINKLID-LDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAED------ALILYTDKLQVEKGVTL 122 (177)
T ss_dssp HHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHH------HHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHH------HHHhCCchhHHHHHHHH
Confidence 456666666543 4599999999999987543 24699999999999999886531 22211 113455555
Q ss_pred HHHHHhC-CCCcHHHHHHHHHHHHHH
Q 037765 122 YQIGISR-KAEPLDKLEEALALFIDR 146 (153)
Q Consensus 122 ~~~Gi~~-~A~P~~~L~~~~~~F~~R 146 (153)
.++=... ...|....+++...|+.|
T Consensus 123 ~~Kk~~~~~~~~~~~~~~K~~~~L~r 148 (177)
T 3e3v_A 123 AEKLANRYSHDSYRNKQNKIKQSLLT 148 (177)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCChHHHHHHHHHHHHH
Confidence 5543322 233445556666666654
No 32
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=81.64 E-value=3.9 Score=30.20 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhC------CcchHHHHHHHHHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEEL------EICTGHSLLYQWYAIFLEL 111 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~------~IG~~~AlfYe~wA~~lE~ 111 (153)
.-...+++++..+.... =.+++....+|...+.. .+++.++|.-.... +-....+..|...|.++..
T Consensus 129 ~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 129 EAEPLCKRALEIREKVL-GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 34566666666543220 03356666777666653 23455666665553 2255677788889999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 037765 112 NGKWRDAHMVYQIGISR 128 (153)
Q Consensus 112 ~~~~~~A~~I~~~Gi~~ 128 (153)
.|++++|.+.|+.+++.
T Consensus 208 ~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTR 224 (311)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999999873
No 33
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=80.85 E-value=4.6 Score=28.70 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CC-CCc--HHHHHHHHHHHHHHHHH
Q 037765 96 TGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS-------RK-AEP--LDKLEEALALFIDRLSE 149 (153)
Q Consensus 96 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-------~~-A~P--~~~L~~~~~~F~~R~~~ 149 (153)
..-|..+..=|.-.+..|+|++|...|..||+ .. ..| .+.|+++..+...|.+.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~ 78 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK 78 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888889999999999999999988 22 233 46788899999888765
No 34
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=80.66 E-value=4.9 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.+...|..+...|++++|...|..++.
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 344445555555555555555555544
No 35
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=80.37 E-value=6.3 Score=26.68 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCcH--HHHHHHHHHHHHHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGIS-------RKAEPL--DKLEEALALFIDRLSE 149 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-------~~A~P~--~~L~~~~~~F~~R~~~ 149 (153)
-|.-+..=|.-++..|+|++|...|..||+ ....|. +.|..+..+...|.+.
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~ 74 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456667778889999999999999998887 233343 4477788888888765
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=79.64 E-value=4.8 Score=29.50 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 66 IRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 66 ~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
|....+|...+.. .+++...|.-..... ..+..+...|..+...|++++|...|+..++....
T Consensus 115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3344455544432 345678888877766 56777889999999999999999999999986543
No 37
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=79.04 E-value=15 Score=26.28 Aligned_cols=85 Identities=15% Similarity=0.041 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhC------CcchHHHHHHHHHHHHHH
Q 037765 43 TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEEL------EICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 43 ~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~------~IG~~~AlfYe~wA~~lE 110 (153)
..-...+++++..+.... -.+++....+|...+.. .+++.+.|.-.... +-....+..|...|.++.
T Consensus 102 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVL-GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 345667777777654321 13357777777776653 23456666665554 224567888999999999
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 037765 111 LNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 111 ~~~~~~~A~~I~~~Gi~~ 128 (153)
..|++++|...|+.+++.
T Consensus 181 ~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999999974
No 38
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=78.70 E-value=19 Score=28.19 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcc---cCC---HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG---SKD---YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDA 118 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~---~~d---~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A 118 (153)
-...+++++...... +|+.+...+...+.. ..+ ..+...++...+.-...+..|...|.++...|++++|
T Consensus 283 A~~~~~~al~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 358 (383)
T 3ulq_A 283 AHEYHSKGMAYSQKA----GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKA 358 (383)
T ss_dssp HHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 355566666554432 344443332222221 233 5566777777788888889999999999999999999
Q ss_pred HHHHHHHHh
Q 037765 119 HMVYQIGIS 127 (153)
Q Consensus 119 ~~I~~~Gi~ 127 (153)
.+.|+++++
T Consensus 359 ~~~~~~al~ 367 (383)
T 3ulq_A 359 SAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999987
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=78.58 E-value=21 Score=27.59 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=49.8
Q ss_pred HHHHHHHHHhc---ccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHH
Q 037765 67 RFLKIWFLYLE---GSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLD 134 (153)
Q Consensus 67 RyLkiWi~Ya~---~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~ 134 (153)
+....|+.... ..+++..+|.-+... ....+..|..-|..+...|++++|.+.|++.+.....-.+
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 44455766542 355778899888876 3446778888999999999999999999999996644433
No 40
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=78.40 E-value=9.6 Score=23.60 Aligned_cols=77 Identities=9% Similarity=0.170 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-..++++++....+ + ..+|...+.. .++...+|.-+.... ...+..+...|..+...|++++
T Consensus 27 ~A~~~~~~~~~~~~~------~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (125)
T 1na0_A 27 EAIEYYQKALELDPN------N---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDE 95 (125)
T ss_dssp HHHHHHHHHHHHCTT------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCcC------c---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHH
Confidence 446777777766322 2 2344444432 334567777766543 3445667788999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 037765 118 AHMVYQIGISRKAE 131 (153)
Q Consensus 118 A~~I~~~Gi~~~A~ 131 (153)
|...|+.+++....
T Consensus 96 A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 96 AIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999986543
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=77.31 E-value=6.1 Score=28.46 Aligned_cols=63 Identities=10% Similarity=0.039 Sum_probs=42.5
Q ss_pred HHHHHHHHhcc------cCCHHHHHHHHHhCCcch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 68 FLKIWFLYLEG------SKDYEKVFREMEELEICT-----GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 68 yLkiWi~Ya~~------~~d~~~if~~L~~~~IG~-----~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
...+|...+.. .+++.+.|.-.....-.. .++..|..-+..+...|++++|.+.|++.++...
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 44555555442 234566666665543332 2456788888899999999999999999998743
No 42
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=76.84 E-value=11 Score=26.80 Aligned_cols=28 Identities=7% Similarity=-0.166 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 102 YQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 102 Ye~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
|-.-+..+...|++++|.+.|++.++..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3344445555555555555555555543
No 43
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.74 E-value=9 Score=24.88 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++... .+++-...+|..++.. .+++.+.|...... ....+..|...|..+...|++++
T Consensus 46 ~A~~~~~~a~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~ 117 (148)
T 2dba_A 46 GALAAYTQALGLD------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRRSQALEKLGRLDQ 117 (148)
T ss_dssp HHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHc------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHHHHHHHHcCCHHH
Confidence 3456666666542 2333345566655542 33456666665553 33446777888999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 037765 118 AHMVYQIGISRKAE 131 (153)
Q Consensus 118 A~~I~~~Gi~~~A~ 131 (153)
|...|+.++.....
T Consensus 118 A~~~~~~al~~~p~ 131 (148)
T 2dba_A 118 AVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999986543
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=76.47 E-value=18 Score=25.67 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 94 ICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 94 IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
+....+..|...|..+...|++++|.+.|+.++....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 170 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 4556677777888888888888888888888887553
No 45
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=75.52 E-value=15 Score=24.39 Aligned_cols=77 Identities=10% Similarity=0.051 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++....++ ..+|...+.. .+++.++|.-+... ....+..+...|..+...|++++
T Consensus 60 ~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 60 RGTELLERSLADAPDN---------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHH
Confidence 4466777777663221 2344444432 23455666665543 33455667778888888999999
Q ss_pred HHHHHHHHHhCCCC
Q 037765 118 AHMVYQIGISRKAE 131 (153)
Q Consensus 118 A~~I~~~Gi~~~A~ 131 (153)
|.++|+.+++....
T Consensus 129 A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 129 AIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCcc
Confidence 99999988886543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=74.99 E-value=20 Score=25.63 Aligned_cols=67 Identities=9% Similarity=-0.040 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcH
Q 037765 65 DIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPL 133 (153)
Q Consensus 65 D~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~ 133 (153)
++....+|...+.. .+++.+.|....... ...+..|...|..+...|++++|..+|+.+++......
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 33344455554442 334566666655433 34567788899999999999999999999998664443
No 47
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=74.66 E-value=9.9 Score=25.56 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-Cc-HHHHHHHHHHHHHHHHHh
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA-EP-LDKLEEALALFIDRLSER 150 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A-~P-~~~L~~~~~~F~~R~~~~ 150 (153)
+++...|.-.... ....+..|...+..+...|++++|.+.|+.++.... .| ...+..+.......+...
T Consensus 69 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 69 EQALQSYSYGALM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence 3456777666554 344556677788889999999999999999987542 22 344555555454444443
No 48
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=74.66 E-value=12 Score=26.28 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCC--------------cchHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELE--------------ICTGHSLLYQ 103 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~--------------IG~~~AlfYe 103 (153)
.-...+++++.... .....|...+.. .+++.+.|.-..... +....+..|.
T Consensus 55 ~A~~~~~~al~~~~---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
T 1hh8_A 55 EAEKAFTRSINRDK---------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 125 (213)
T ss_dssp HHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred HHHHHHHHHHHhCc---------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHH
Confidence 34566777776532 223444444432 345677777776643 3334567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCc-HHHHHHHHHH
Q 037765 104 WYAIFLELNGKWRDAHMVYQIGISRKAEP-LDKLEEALAL 142 (153)
Q Consensus 104 ~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P-~~~L~~~~~~ 142 (153)
..|..+...|++++|.+.|+.++.....+ ...+......
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 165 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC 165 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHH
Confidence 88999999999999999999999976543 2334443333
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=73.27 E-value=17 Score=24.06 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+.++|.-..... ......|...|..+...|++++|...|+.+++
T Consensus 129 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 129 AIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555444432 33345556666666666777777666666655
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=72.92 E-value=13 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
...|...|..+...|++++|..+|+.++..
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444555555555555555555555543
No 51
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=72.75 E-value=14 Score=22.93 Aligned_cols=78 Identities=9% Similarity=-0.008 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHH
Q 037765 43 TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWR 116 (153)
Q Consensus 43 ~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~ 116 (153)
..-...+++++....++ ..+|...+.. .+++.+.|...... ....+..|...|..+...|+++
T Consensus 29 ~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 29 EAAVHFYGKAIELNPAN---------AVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLALSSLNKHV 97 (131)
T ss_dssp HHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHHHHhCCHH
Confidence 34566777777653322 3344444432 23456666666653 3445677888899999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 037765 117 DAHMVYQIGISRKAE 131 (153)
Q Consensus 117 ~A~~I~~~Gi~~~A~ 131 (153)
+|...|+.++.....
T Consensus 98 ~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 98 EAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999987543
No 52
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=72.70 E-value=20 Score=24.43 Aligned_cols=96 Identities=9% Similarity=0.027 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++....++ ..+|...+.. .+++...|...... ....+..|...+..+...|++++
T Consensus 29 ~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~ 97 (164)
T 3sz7_A 29 KAIDLYTQALSIAPAN---------PIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLARFDMADYKG 97 (164)
T ss_dssp HHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCcC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHH
Confidence 4466677777664332 2344444332 34566777666554 45567778889999999999999
Q ss_pred HHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHh
Q 037765 118 AHMVYQIGISRK-AEPLDKLEEALALFIDRLSER 150 (153)
Q Consensus 118 A~~I~~~Gi~~~-A~P~~~L~~~~~~F~~R~~~~ 150 (153)
|.+.|+++++.. ..|...+.........++.+.
T Consensus 98 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 98 AKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999854 233444556666666665543
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=72.65 E-value=12 Score=27.13 Aligned_cols=49 Identities=14% Similarity=-0.057 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
++.+.|.-.... ....+..|...|..+...|++++|..+|+.+++....
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 445555555543 2334556666777777777777777777777775433
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=72.55 E-value=25 Score=25.63 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhC------CcchHHHHHHHHHHHHHH
Q 037765 43 TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEEL------EICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 43 ~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~------~IG~~~AlfYe~wA~~lE 110 (153)
..-..++++++..+..... .+++....+|...+.. .+++.+.|.-.... +--...+..|...|..+.
T Consensus 44 ~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (311)
T 3nf1_A 44 EVAVPLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 3456777777776544321 1456666667666653 23455666555433 223567888999999999
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 037765 111 LNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 111 ~~~~~~~A~~I~~~Gi~~ 128 (153)
..|++++|...|+.+++.
T Consensus 123 ~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 123 KRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp TTTCHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHH
Confidence 999999999999999975
No 55
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=72.25 E-value=10 Score=25.37 Aligned_cols=36 Identities=8% Similarity=-0.053 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
.+|.-|..-+..++..|++++|.+.|++++.....|
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 346677788899999999999999999999865444
No 56
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=70.79 E-value=18 Score=23.27 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHhCCc-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 80 KDYEKVFREMEELEI-CTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 80 ~d~~~if~~L~~~~I-G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
+++...|.-....+. -...+..|...+..+...|++++|.+.|+++++.....
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 345566666655322 15577888899999999999999999999999976443
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=70.47 E-value=16 Score=22.58 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
++...+|.-+.... ...+..|...+..+...|++++|.++++.+++.....
T Consensus 52 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 52 DEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHC--CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34567777666543 3445667788999999999999999999999876543
No 58
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=70.44 E-value=36 Score=26.57 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
..+...++...+.-...+..+...|.++...|++++|.+.|+++++.
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56777777787777888899999999999999999999999999863
No 59
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=70.40 E-value=17 Score=22.69 Aligned_cols=94 Identities=9% Similarity=-0.027 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcch-----HHHHHHHHHHHHHHHc
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICT-----GHSLLYQWYAIFLELN 112 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~-----~~AlfYe~wA~~lE~~ 112 (153)
.-...+++++....+ + ..+|...+.. .+++...|.-.....-.. ..+..|...|..+...
T Consensus 22 ~A~~~~~~a~~~~~~------~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 92 (131)
T 1elr_A 22 TALKHYDKAKELDPT------N---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE 92 (131)
T ss_dssp HHHHHHHHHHHHCTT------C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCc------c---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHh
Confidence 346667777765322 2 2334433332 334556665555432211 1167788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 037765 113 GKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLS 148 (153)
Q Consensus 113 ~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~ 148 (153)
|++++|.+.|+.++..... .............+.
T Consensus 93 ~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 93 EKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILK 126 (131)
T ss_dssp TCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHH
Confidence 9999999999999997643 344444444444443
No 60
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=70.34 E-value=16 Score=22.42 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhCCcchHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 81 DYEKVFREMEELEICTGHSL-LYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
++...|...... ....+. .|...|..+...|++++|.+.|+.+++.....
T Consensus 18 ~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 18 NALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 344455444432 223344 66778888899999999999999999966443
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=69.63 E-value=5.4 Score=27.62 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.+..|-.-+..+...|++++|.+.|+++++.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~ 35 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD 35 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34556677888888888888888888888754
No 62
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=69.35 E-value=34 Score=27.64 Aligned_cols=85 Identities=8% Similarity=-0.160 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhccC-------ccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHH-------SQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~-------~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE 110 (153)
.-...+++++..+... +.-..++....+|...+.. .+++.+.|...... ....+..|-..|..+.
T Consensus 241 ~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 318 (370)
T 1ihg_A 241 MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQ 318 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 3456667777654332 1122567778888887764 23456777776654 4456777778889999
Q ss_pred HcCCHHHHHHHHHHHHhCCC
Q 037765 111 LNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 111 ~~~~~~~A~~I~~~Gi~~~A 130 (153)
..|++++|.+.|+++++...
T Consensus 319 ~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 319 GLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HccCHHHHHHHHHHHHHhCC
Confidence 99999999999999998654
No 63
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=69.04 E-value=19 Score=22.85 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++...|..... +....+..|...|..+...|++++|...|+.+++..
T Consensus 36 ~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 36 DAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345666666554 344556778889999999999999999999999843
No 64
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=68.81 E-value=15 Score=25.21 Aligned_cols=48 Identities=8% Similarity=-0.107 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++.+.|....... -..+..|...+..+...|++++|.+.|+++++..
T Consensus 72 ~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 72 DLAIHSYSYGAVMD--IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667777766543 3445556667888899999999999999998854
No 65
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=68.36 E-value=7.1 Score=29.56 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=54.2
Q ss_pred HHHHHHhccc---CCH---------HHHHHHHHh------CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 70 KIWFLYLEGS---KDY---------EKVFREMEE------LEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 70 kiWi~Ya~~~---~d~---------~~if~~L~~------~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
..|..|++.. .|| +++|+--.+ ++--..-+-+|+.||.+.|. ++.++|.+||+..++.+ +
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei-~D~d~aR~vy~~a~~~h-K 91 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAI-QEPDDARDYFQMARANC-K 91 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHH-HCGGGCHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHh-H
Confidence 3566666642 344 255554332 34455678899999988655 99999999999998864 3
Q ss_pred cHHHHHHHHHHHHHH
Q 037765 132 PLDKLEEALALFIDR 146 (153)
Q Consensus 132 P~~~L~~~~~~F~~R 146 (153)
-...+--.|.+|+-|
T Consensus 92 kFAKiwi~~AqFEiR 106 (161)
T 4h7y_A 92 KFAFVHISFAQFELS 106 (161)
T ss_dssp TBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 358899999999977
No 66
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.34 E-value=18 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 95 CTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 95 G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+.+-|-=|+.=|--++..|+-.+|.+.|+.||.
T Consensus 18 ~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 345677788888888889999999999999998
No 67
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=66.87 E-value=23 Score=22.96 Aligned_cols=36 Identities=6% Similarity=0.039 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 94 ICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 94 IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.|...+..|...|..+.+.|++++|...++..+.-.
T Consensus 41 ~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 41 STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 367788899999999999999999999999999754
No 68
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=66.26 E-value=26 Score=23.33 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=34.8
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
++...|..... +....+.+|...+..+...|++++|...|++++....
T Consensus 36 ~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 36 DAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44455554443 2334556677788889999999999999999998653
No 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=65.51 E-value=13 Score=26.33 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=58.4
Q ss_pred HHHHHHHHhccCccc----cccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 48 LLSNCINTFKHHSQY----KNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 48 lLErc~~~f~~~~~Y----~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
+.+++..-+.....+ .-||.....|...+.. .+++...|..+... -...+.+|...+..+...|++++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHH
Confidence 334444444444443 3478888888777653 45678888877754 44567788899999999999999
Q ss_pred HHHHHHHHHhCC
Q 037765 118 AHMVYQIGISRK 129 (153)
Q Consensus 118 A~~I~~~Gi~~~ 129 (153)
|...|+++++-.
T Consensus 89 Ai~~~~~al~l~ 100 (151)
T 3gyz_A 89 AADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhC
Confidence 999999999854
No 70
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=65.34 E-value=23 Score=22.27 Aligned_cols=76 Identities=18% Similarity=0.065 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++....+ + ..+|...+.. .+++...|..... +....+..|...|..+...|++++
T Consensus 34 ~A~~~~~~al~~~~~------~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~ 102 (133)
T 2lni_A 34 QAMKHYTEAIKRNPK------D---AKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRKAAALEAMKDYTK 102 (133)
T ss_dssp HHHHHHHHHHTTCTT------C---HHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCC------c---HHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHHhhHHH
Confidence 346667777654322 2 3444444432 2345566666554 345567788899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 037765 118 AHMVYQIGISRKA 130 (153)
Q Consensus 118 A~~I~~~Gi~~~A 130 (153)
|.+.|+.++....
T Consensus 103 A~~~~~~~~~~~p 115 (133)
T 2lni_A 103 AMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998653
No 71
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=65.29 E-value=33 Score=24.10 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=31.9
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
++.++|.-+... ....+..|...|..+...|++++|.+.|+..++...
T Consensus 109 ~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 109 EAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 445566555443 333455667777888888888888888888877543
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=64.67 E-value=35 Score=26.36 Aligned_cols=34 Identities=9% Similarity=-0.127 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 96 TGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 96 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
...+..|...|.++...|++++|.+.|+..++-.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3446677778888888888888888888887754
No 73
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=64.65 E-value=13 Score=24.87 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+..|..-|..+...|++++|.+.|+++|+
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45666677777777777777777777776
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=64.04 E-value=32 Score=23.49 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
..+..|...|..+...|++++|.+.|+++|+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34445555555666666666666666666554
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=63.85 E-value=27 Score=25.58 Aligned_cols=86 Identities=8% Similarity=0.009 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHh---------cccCCHHHHHHHHHhCCcchHHHH---------------
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYL---------EGSKDYEKVFREMEELEICTGHSL--------------- 100 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya---------~~~~d~~~if~~L~~~~IG~~~Al--------------- 100 (153)
=...+++++..+.+++ ...+..|..-.+.+. ...+++...|.-+....=....+.
T Consensus 71 A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~ 149 (261)
T 3qky_A 71 AASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLAR 149 (261)
T ss_dssp HHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHH
Confidence 4666777777665443 222333333333332 223455666666655433322221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
-+-..|.++...|++++|...|+..++....
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 1245678899999999999999999986544
No 76
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=63.26 E-value=19 Score=27.86 Aligned_cols=28 Identities=7% Similarity=-0.187 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 101 LYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 101 fYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
.+..-+.++...|++++|.+.|+..++.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444455555555555555555555544
No 77
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=63.08 E-value=30 Score=22.97 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++.+.|.-... +....+.-|...|..+...|++++|.+.|+++++-.
T Consensus 64 ~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 64 QRALDDCDTCIR--LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 345566655543 556667788889999999999999999999999865
No 78
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=62.40 E-value=33 Score=26.88 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
+++.+.|.-+... ....+..|...+..+...|++++|...|+..++...
T Consensus 312 ~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 312 VEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3456666665543 455677888899999999999999999999998543
No 79
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=61.72 E-value=22 Score=24.63 Aligned_cols=49 Identities=10% Similarity=-0.127 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
....|.-... +.-..+..+...|..+...|++++|...|+..++....|
T Consensus 93 a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 93 ELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 4566655554 334456777888999999999999999999999987654
No 80
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=61.23 E-value=29 Score=22.16 Aligned_cols=30 Identities=7% Similarity=-0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.+..|...|..+...|++++|.+.++.++.
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466777778888888888888888888775
No 81
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=60.30 E-value=25 Score=21.16 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
++...|....... ...+..|...|..+...|++++|.+.|+++++....
T Consensus 24 ~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 24 ESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3445555444432 233556778899999999999999999999997655
No 82
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=59.83 E-value=42 Score=23.58 Aligned_cols=66 Identities=14% Similarity=-0.048 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 64 NDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 64 nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
.+|....+|...+.. .+++.+.|.-... +....+..|...|..+...|++++|...|+.+++....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 456666777776653 2345566666554 33445678888899999999999999999999986544
No 83
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=59.66 E-value=53 Score=24.66 Aligned_cols=81 Identities=9% Similarity=-0.021 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHH----HhCCcchHHHHHHHHHHHHHHHcC-
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREM----EELEICTGHSLLYQWYAIFLELNG- 113 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L----~~~~IG~~~AlfYe~wA~~lE~~~- 113 (153)
-...+++++..+...+ .+++....++...+.. .+++.+.|.-. ...+--...+..|..-+..+...|
T Consensus 174 A~~~~~~al~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 174 GIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 3455566666554432 2556666666665543 12233333222 233333445777777777777777
Q ss_pred CHHHHHHHHHHHHh
Q 037765 114 KWRDAHMVYQIGIS 127 (153)
Q Consensus 114 ~~~~A~~I~~~Gi~ 127 (153)
.+++|.+.|++++.
T Consensus 252 ~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 252 EEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 46788777777765
No 84
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.52 E-value=32 Score=22.02 Aligned_cols=74 Identities=8% Similarity=-0.093 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDA 118 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A 118 (153)
-...+++++....++ ..+|...+.. .+++.+.|.-... +....+..|...|..+...|++++|
T Consensus 23 A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A 91 (126)
T 3upv_A 23 AVKAYTEMIKRAPED---------ARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASA 91 (126)
T ss_dssp HHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 456666666653222 2444444432 3345666665554 3455677788899999999999999
Q ss_pred HHHHHHHHhCC
Q 037765 119 HMVYQIGISRK 129 (153)
Q Consensus 119 ~~I~~~Gi~~~ 129 (153)
.+.|++++...
T Consensus 92 ~~~~~~al~~~ 102 (126)
T 3upv_A 92 LETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999865
No 85
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=59.18 E-value=67 Score=25.66 Aligned_cols=92 Identities=14% Similarity=-0.042 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhccCccccccHH--HHHHHHHHh-----------cccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIR--FLKIWFLYL-----------EGSKDYEKVFREMEELEICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~R--yLkiWi~Ya-----------~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE 110 (153)
.-...+++++....+........- +.+-++... ...+++...|.-..... ...+..|...|.++.
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 345667777777655554444332 122222221 23345667777666543 345577888999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCcHHHHH
Q 037765 111 LNGKWRDAHMVYQIGISRKAEPLDKLE 137 (153)
Q Consensus 111 ~~~~~~~A~~I~~~Gi~~~A~P~~~L~ 137 (153)
..|++++|.+.|+..++....+.+.+.
T Consensus 474 ~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999998766655544
No 86
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=58.60 E-value=12 Score=21.11 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 037765 103 QWYAIFLELNGKWRDAHMVYQI 124 (153)
Q Consensus 103 e~wA~~lE~~~~~~~A~~I~~~ 124 (153)
..|++++-+.|...+|+.|-+.
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~q 27 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEKT 27 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHH
Confidence 5799999999999999999544
No 87
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=58.34 E-value=18 Score=24.13 Aligned_cols=29 Identities=21% Similarity=0.066 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 100 LLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 100 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
..|..-|..+...|++++|.+.|+++|+-
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 34444555555555555555555555553
No 88
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=58.31 E-value=39 Score=27.64 Aligned_cols=82 Identities=9% Similarity=-0.024 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhccCccccccHH-HHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIR-FLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWR 116 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~R-yLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~ 116 (153)
.-..++++++....+. ..+|. +..+|...+.. .+++.++|.-+...+ ...+..|...+..+...|+++
T Consensus 493 ~A~~~~~~~~~~~~~~---~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 493 TAINHFQNALLLVKKT---QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHHHHHHHHHHS---CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhhhcc---ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHH
Confidence 3455666666554332 22333 24555555543 346778888877654 556788999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 037765 117 DAHMVYQIGISRKA 130 (153)
Q Consensus 117 ~A~~I~~~Gi~~~A 130 (153)
+|.++|++.++...
T Consensus 568 ~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 568 LAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998653
No 89
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=58.24 E-value=35 Score=26.40 Aligned_cols=81 Identities=5% Similarity=-0.138 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHh----CCcchHHHHHHHHHHHHHHHcCC
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEE----LEICTGHSLLYQWYAIFLELNGK 114 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~ 114 (153)
=...+++++....+. .+......++...+.. .+++...|.-... .+-....+..|...|.++...|+
T Consensus 242 A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 242 AIEHHQERLRIAREF---GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 355566666665542 2333333444444432 2234444443332 23333457888889999999999
Q ss_pred HHHHHHHHHHHHhC
Q 037765 115 WRDAHMVYQIGISR 128 (153)
Q Consensus 115 ~~~A~~I~~~Gi~~ 128 (153)
+++|.+.|+.++..
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998874
No 90
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=57.77 E-value=31 Score=21.30 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+.+.|.-..... ...+..|...|..+...|++++|.+.|..++.....
T Consensus 31 A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 31 AVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 445555444332 234667788899999999999999999999986544
No 91
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=57.76 E-value=33 Score=24.69 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
+++.+.|.-... +....+..|...|..+...|++++|.+.|+++++...
T Consensus 91 ~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 91 SLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence 345666666555 3344556777888888888888888888888887643
No 92
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=57.37 E-value=33 Score=22.49 Aligned_cols=51 Identities=20% Similarity=-0.059 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
+++.+.|.-.... ....+..|...|..+...|++++|.+.|+++++.....
T Consensus 64 ~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 64 GYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3456666665553 45567788899999999999999999999999975443
No 93
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=57.30 E-value=37 Score=26.26 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 79 SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 79 ~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.+++.+.|.-+.. +....+..+...+.++...|++++|.++|+..+...
T Consensus 117 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 117 MEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp SSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3455666655554 234445555666666777777777777777766644
No 94
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=57.18 E-value=21 Score=22.97 Aligned_cols=32 Identities=16% Similarity=0.005 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
+..|...|..+...|++++|...|+++++...
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35566667777777777777777777777543
No 95
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=56.51 E-value=68 Score=24.88 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHh----CCcchHHHHHHHHHHHHHHHcCCH
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEE----LEICTGHSLLYQWYAIFLELNGKW 115 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~~ 115 (153)
...+++++..+.+. .+.+....++...+.. .+.+.+.|.-... .+--...+..|...|..+...|++
T Consensus 204 ~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (383)
T 3ulq_A 204 ISHFQKAYSMAEAE---KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCH
Confidence 44455555555443 3444444555554432 2234555554444 122134477788889999999999
Q ss_pred HHHHHHHHHHHhC
Q 037765 116 RDAHMVYQIGISR 128 (153)
Q Consensus 116 ~~A~~I~~~Gi~~ 128 (153)
++|.+.|++++.-
T Consensus 281 ~~A~~~~~~al~~ 293 (383)
T 3ulq_A 281 DKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999873
No 96
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=55.61 E-value=54 Score=23.50 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHH-HhcccCCHHHHHHHHHhCCcchHH-HHHHHHHHHHHHHcCCHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFL-YLEGSKDYEKVFREMEELEICTGH-SLLYQWYAIFLELNGKWRDAHMV 121 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~-Ya~~~~d~~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~~~~~~A~~I 121 (153)
.-..++++++....++.. ..+..-.+. .....+++.+.|.-.....-.... +..|...+..+...|++++|.+.
T Consensus 21 ~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 21 EAIEVFNKLEAKKYNSPY----IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp HHHHHHHHHHHTTCCCST----THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 346666777665433221 122221211 112345677888888774422233 66688999999999999999999
Q ss_pred HHHHHhCCC
Q 037765 122 YQIGISRKA 130 (153)
Q Consensus 122 ~~~Gi~~~A 130 (153)
|+++++...
T Consensus 97 ~~~a~~~~~ 105 (272)
T 3u4t_A 97 YQAAVDRDT 105 (272)
T ss_dssp HHHHHHHST
T ss_pred HHHHHhcCc
Confidence 999999653
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=55.47 E-value=47 Score=25.96 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
+++...|.-+... +...+..|...+..+...|++++|.++|+..+....
T Consensus 77 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 77 KAALPDLTKVIQL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456666666553 344567777788888888888888888888887654
No 98
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=54.75 E-value=22 Score=22.47 Aligned_cols=33 Identities=6% Similarity=-0.101 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+..+...|..+...|++++|...|++.++....
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 39 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD 39 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455667788899999999999999999986543
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=54.65 E-value=7.7 Score=27.11 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHH
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAH 119 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~ 119 (153)
...+++++...-+ ...+|+.++.. .++....|.-+....=...-+..+...+.++...|+.++|.
T Consensus 94 ~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 94 LKRLEQELAANPD---------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 5667777765322 23455555442 34567888877776544434456677889999999999999
Q ss_pred HHHHHHHh
Q 037765 120 MVYQIGIS 127 (153)
Q Consensus 120 ~I~~~Gi~ 127 (153)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 100
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=53.78 E-value=40 Score=27.61 Aligned_cols=50 Identities=8% Similarity=-0.057 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhC----CcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEEL----EICTG-HSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~----~IG~~-~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++.++|.-+... ++... .+..|...+..+...|++++|.++|+..++..
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455666655543 22222 25666666677777777777777777766644
No 101
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=53.67 E-value=31 Score=21.81 Aligned_cols=35 Identities=9% Similarity=-0.062 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
.+..|...|..+...|++++|...|+..+......
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 45567778888999999999999999999866443
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=53.49 E-value=58 Score=23.22 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+++...|.-... +....+..|...+..+...|++++|.+.|++.++....
T Consensus 71 ~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 71 DKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 345666666554 34556777888899999999999999999999986543
No 103
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=53.28 E-value=21 Score=21.87 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 102 YQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 102 Ye~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
|...|..+...|++++|.+.|+.++.....
T Consensus 41 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 41 YSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 445666777777888888888877776543
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=52.93 E-value=45 Score=21.78 Aligned_cols=46 Identities=2% Similarity=-0.161 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
++...|.-.....-....+..+...+..+...|++++|.+.+....
T Consensus 99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 99 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 4556666666555445555555566666666777777777776543
No 105
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=52.13 E-value=38 Score=20.64 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
++.++|.-+.... ...+..+...|..+...|++++|..+|+.++....
T Consensus 27 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 27 EAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 3445555554432 23455677788999999999999999999998654
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=49.14 E-value=81 Score=23.60 Aligned_cols=84 Identities=14% Similarity=0.022 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhccCccccccHH-HHHHHHHHhcc--cCCHHHHHHHHHh----C-CcchHHHHHHHHHHHHHHHcCCH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIR-FLKIWFLYLEG--SKDYEKVFREMEE----L-EICTGHSLLYQWYAIFLELNGKW 115 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~R-yLkiWi~Ya~~--~~d~~~if~~L~~----~-~IG~~~AlfYe~wA~~lE~~~~~ 115 (153)
.-...+++++.............. |..+=.-|... .+.+.+.|.-... . +.-...+..|-..+.++...|++
T Consensus 133 ~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 345667777774333221111121 33333334433 2345566665552 2 44556777889999999999999
Q ss_pred HHHHHHHHHHHh
Q 037765 116 RDAHMVYQIGIS 127 (153)
Q Consensus 116 ~~A~~I~~~Gi~ 127 (153)
++|.+.+++|++
T Consensus 213 ~~A~~~~~~al~ 224 (293)
T 3u3w_A 213 EESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999997
No 107
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=48.81 E-value=60 Score=22.03 Aligned_cols=80 Identities=3% Similarity=-0.116 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhccCccccccH-HHHHHHHHHhcc------cCCHHHHHHHHH----hCCcchHHHHHHHHHHHHHHHcC
Q 037765 45 LYKLLSNCINTFKHHSQYKNDI-RFLKIWFLYLEG------SKDYEKVFREME----ELEICTGHSLLYQWYAIFLELNG 113 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~-RyLkiWi~Ya~~------~~d~~~if~~L~----~~~IG~~~AlfYe~wA~~lE~~~ 113 (153)
-...+++++..+... .+++ ....++...+.. .+++...|.-.. ..+--...+..+...+..+...|
T Consensus 85 A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 85 ARRCFLEERELLASL---PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 455666666665432 2233 333333333321 223334443322 23333345666777788888888
Q ss_pred CHHHHHHHHHHHHh
Q 037765 114 KWRDAHMVYQIGIS 127 (153)
Q Consensus 114 ~~~~A~~I~~~Gi~ 127 (153)
++++|...++.+++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888776
No 108
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=48.76 E-value=75 Score=25.06 Aligned_cols=52 Identities=19% Similarity=-0.012 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 79 SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 79 ~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
.+++...|.-+.... ...+..|...|..+...|++++|...|+..+......
T Consensus 55 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 106 (514)
T 2gw1_A 55 LKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106 (514)
T ss_dssp HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 345677887777643 4556777788999999999999999999999877433
No 109
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=47.97 E-value=45 Score=20.28 Aligned_cols=12 Identities=0% Similarity=-0.119 Sum_probs=5.8
Q ss_pred CHHHHHHHHHhC
Q 037765 81 DYEKVFREMEEL 92 (153)
Q Consensus 81 d~~~if~~L~~~ 92 (153)
++.+.|.-....
T Consensus 56 ~A~~~~~~al~~ 67 (111)
T 2l6j_A 56 QAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHh
Confidence 344555555443
No 110
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=47.60 E-value=38 Score=26.86 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHh--------CCcchHHHHHHHHHHHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEE--------LEICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~--------~~IG~~~AlfYe~wA~~lE 110 (153)
=+..+++++..++....-..|++.+-.|-..+.. .+++...|.-... .++-...+..-..|+.+..
T Consensus 70 Al~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (472)
T 4g1t_A 70 ALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKC 149 (472)
T ss_dssp HHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHH
Confidence 3566777777666555555678887777665542 2234444433221 1122223344456666666
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 037765 111 LNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 111 ~~~~~~~A~~I~~~Gi~~~ 129 (153)
..+++++|.+.|++++.-.
T Consensus 150 ~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 150 GGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHhC
Confidence 6788999999999998754
No 111
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=47.22 E-value=60 Score=27.37 Aligned_cols=117 Identities=9% Similarity=0.115 Sum_probs=67.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccc----------cccHHHHHHHHH-Hhcc---------
Q 037765 19 PLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQY----------KNDIRFLKIWFL-YLEG--------- 78 (153)
Q Consensus 19 PL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y----------~nD~RyLkiWi~-Ya~~--------- 78 (153)
+|+.|-+-+.-+...- .+ + -+....|.+..=.++...... .|-.+-+.||+. ..+.
T Consensus 225 ~l~~WkE~La~i~t~a-~~-e--~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~ 300 (399)
T 2pm7_A 225 DVSQWKFISKAIQNLY-PN-D--IAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNK 300 (399)
T ss_dssp CGGGHHHHHHHHHHHC-TT-C--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred ChhhHHHHHHHHHhcC-Cc-c--HhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccC
Confidence 5888998777666442 21 1 123444444444444332111 356789999987 2211
Q ss_pred ---------cCC---HHHHHHHHHh---CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 037765 79 ---------SKD---YEKVFREMEE---LEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEAL 140 (153)
Q Consensus 79 ---------~~d---~~~if~~L~~---~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~ 140 (153)
..| -..||..... .-.+..++.+|.+||.+|..+|.+..|.+.+.. |...-..+..|..+.
T Consensus 301 s~~~~~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~-lp~~~~~~~~lr~Rl 376 (399)
T 2pm7_A 301 TIYEAHSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNS-LPSDNEEVKTEKARV 376 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-SCTTCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHh-CCCCChhHHHHHHHH
Confidence 111 1233433322 125577999999999999999999999999975 222222344454443
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=46.63 E-value=1e+02 Score=23.94 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
+..+...|..+...|++++|...++++++-
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 677788899999999999999999999984
No 113
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=46.49 E-value=35 Score=23.01 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
+.|.-+..-+..+...|+|++|...|..+|..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999985
No 114
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=46.41 E-value=39 Score=28.30 Aligned_cols=48 Identities=21% Similarity=-0.022 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++.+.|.-..... ...+..|...|..+...|++++|.+.|+++++..
T Consensus 57 ~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 57 GYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45667777666553 4456677788999999999999999999999854
No 115
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=46.38 E-value=54 Score=20.79 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+..|...|..+...|++++|...|+.+++
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666778888899999999999999887
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=45.97 E-value=94 Score=23.46 Aligned_cols=79 Identities=8% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHhcc----------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCH
Q 037765 46 YKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG----------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKW 115 (153)
Q Consensus 46 ~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~----------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~ 115 (153)
...+++++..+... .+++....+|...+.. ..--..........+--...+..|...|..+...|++
T Consensus 167 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 167 VDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Q ss_pred HHHHHHHHHHHh
Q 037765 116 RDAHMVYQIGIS 127 (153)
Q Consensus 116 ~~A~~I~~~Gi~ 127 (153)
++|...|+.++.
T Consensus 244 ~~A~~~~~~al~ 255 (406)
T 3sf4_A 244 ETASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 117
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=43.85 E-value=20 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q 037765 95 CTGHSLLYQWYAIFLELN---GKWRDAHMVYQIGIS 127 (153)
Q Consensus 95 G~~~AlfYe~wA~~lE~~---~~~~~A~~I~~~Gi~ 127 (153)
..+.|.=|+.=|--.+.. |+-.+|.+.|++||.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 345677778888888887 999999999999987
No 118
>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D
Probab=43.63 E-value=17 Score=26.21 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCCCC-----hhhHHHHHHHHHHHhccCc
Q 037765 28 KKALDEWYSGKDSG-----ATDLYKLLSNCINTFKHHS 60 (153)
Q Consensus 28 ~w~~e~~p~g~~~~-----~~~l~~lLErc~~~f~~~~ 60 (153)
||+..+.|...+++ ..++-.||++|+..|..++
T Consensus 82 KWlLnQIP~~~~~~~~~~d~e~le~LL~~~m~eiige~ 119 (121)
T 4gwp_D 82 KWLLNQIPVTEHSKVTRFDEKQIEELLDNCIETFVAEK 119 (121)
T ss_dssp HHHTCCCCCCSSTTSCCSSCSTHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCcccCCcccccCHHHHHHHHHHHHHHHhccc
Confidence 89999999533333 2468999999999988765
No 119
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=43.57 E-value=83 Score=22.15 Aligned_cols=81 Identities=9% Similarity=-0.090 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHhc-cCccccccHHHHHHHHHHhc--ccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHH
Q 037765 44 DLYKLLSNCINTFK-HHSQYKNDIRFLKIWFLYLE--GSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHM 120 (153)
Q Consensus 44 ~l~~lLErc~~~f~-~~~~Y~nD~RyLkiWi~Ya~--~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~ 120 (153)
.=...+++++.... .+. ...|. +=.-|.. ..+++.+.|.-.... ....+..|...|..+...|++++|.+
T Consensus 25 ~A~~~~~~al~~~~~~~~----~~~~~-~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 25 VAFEKYSEYLKLTNNQDS----VTAYN-CGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HHHHHHHHHHHHTTTCCH----HHHHH-HHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCc----HHHHH-HHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHH
Confidence 34666777776643 211 12222 1112222 234566777766654 44467778889999999999999999
Q ss_pred HHHHHHhCCCC
Q 037765 121 VYQIGISRKAE 131 (153)
Q Consensus 121 I~~~Gi~~~A~ 131 (153)
.|+.+++....
T Consensus 98 ~~~~al~~~p~ 108 (228)
T 4i17_A 98 TLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHCCC
Confidence 99999996543
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=43.11 E-value=89 Score=22.37 Aligned_cols=85 Identities=9% Similarity=0.029 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcchH---HHHHHHHHHHHH----------
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLE-GSKDYEKVFREMEELEICTG---HSLLYQWYAIFL---------- 109 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~-~~~d~~~if~~L~~~~IG~~---~AlfYe~wA~~l---------- 109 (153)
.-...+++++..+.+.+ +..+..|..-.+.+.. ..+++.+.|.-+....=... .|.|+.+.+..-
T Consensus 22 ~A~~~~~~~~~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 22 QAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHCTTST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 34666777776644332 2334444444444332 23456777777665443332 366666655432
Q ss_pred ------HHcCCHHHHHHHHHHHHhCC
Q 037765 110 ------ELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 110 ------E~~~~~~~A~~I~~~Gi~~~ 129 (153)
...|++++|...|+..|+..
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTC
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 23789999999999999865
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=42.94 E-value=1e+02 Score=23.01 Aligned_cols=101 Identities=13% Similarity=0.039 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhccCccccccHHHH-HHHHHHhcc------cCCHHHHHHHHH----hCCcchHHHHHHHHHHHHHHHcC
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFL-KIWFLYLEG------SKDYEKVFREME----ELEICTGHSLLYQWYAIFLELNG 113 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyL-kiWi~Ya~~------~~d~~~if~~L~----~~~IG~~~AlfYe~wA~~lE~~~ 113 (153)
-...+++++..+...+ +++... .++...+.. .+++.+.|.-.. ..+--...+..|-.-+.++...|
T Consensus 174 A~~~~~kal~~~~~~~---~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 174 GIDLFEQILKQLEALH---DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC---ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 4566677775554433 333222 455444432 223444444322 22333336888999999999999
Q ss_pred CHHHH-HHHHHHHHhC-CCCcHHHHHHHHHHHHHHHH
Q 037765 114 KWRDA-HMVYQIGISR-KAEPLDKLEEALALFIDRLS 148 (153)
Q Consensus 114 ~~~~A-~~I~~~Gi~~-~A~P~~~L~~~~~~F~~R~~ 148 (153)
++++| ...|++++.- .......+.+.+.....|+.
T Consensus 251 ~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~ 287 (293)
T 2qfc_A 251 YEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLE 287 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHh
Confidence 99999 7778888751 11222334555555555543
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=42.82 E-value=70 Score=21.46 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+.+.|.-.... ....+..|...|..+...|++++|...|++.+.....
T Consensus 30 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 30 AIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 44444444332 2345678888999999999999999999999996644
No 123
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=42.63 E-value=56 Score=23.80 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHh-cccCCHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHH--------cC
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYL-EGSKDYEKVFREMEELEIC-TGHSLLYQWYAIFLEL--------NG 113 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya-~~~~d~~~if~~L~~~~IG-~~~AlfYe~wA~~lE~--------~~ 113 (153)
.-...+++++..+.+++ +..+..|..-.+.+. ....++.+.|.-+....=+ ...+.-|-.-+..+.. .|
T Consensus 33 ~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 33 RAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 44666666666543332 222333333222222 1245677888877765321 1233334445666777 99
Q ss_pred CHHHHHHHHHHHHhCCC
Q 037765 114 KWRDAHMVYQIGISRKA 130 (153)
Q Consensus 114 ~~~~A~~I~~~Gi~~~A 130 (153)
++++|...|+..+....
T Consensus 112 ~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHCc
Confidence 99999999999998653
No 124
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=42.45 E-value=1e+02 Score=31.02 Aligned_cols=71 Identities=4% Similarity=0.035 Sum_probs=41.1
Q ss_pred HHHHHHHhccCccccccHHHHHHHHH--------------HhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCC
Q 037765 49 LSNCINTFKHHSQYKNDIRFLKIWFL--------------YLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGK 114 (153)
Q Consensus 49 LErc~~~f~~~~~Y~nD~RyLkiWi~--------------Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~ 114 (153)
+.++...+....+|..=++||..-++ |++. +.+.++=.|+. +...+.++ .||..++..|+
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~fI~----~~n~ad~~-~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEFIN----GPNNAHIQ-QVGDRCYDEKM 1210 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHHHh----CCCHHHHH-HHHHHHHhcCC
Confidence 34455555556666666666655433 3333 33443333331 33444444 58888888888
Q ss_pred HHHHHHHHHHH
Q 037765 115 WRDAHMVYQIG 125 (153)
Q Consensus 115 ~~~A~~I~~~G 125 (153)
|++|...|...
T Consensus 1211 YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1211 YDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHHHhh
Confidence 88888888874
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=42.35 E-value=52 Score=22.29 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=53.2
Q ss_pred HHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 037765 49 LSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVY 122 (153)
Q Consensus 49 LErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~ 122 (153)
+++++..++..- ..+|-.-..|+..+.. .+.+.+.|.-... +-...+..|...+.++...|++++|...|
T Consensus 13 ~e~ai~~~~~a~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 13 VERYIASVQGST--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHS--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhc--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 455555554432 2444444444444442 3456677766654 45567888899999999999999999999
Q ss_pred HHHHhCCCC
Q 037765 123 QIGISRKAE 131 (153)
Q Consensus 123 ~~Gi~~~A~ 131 (153)
+..++-+..
T Consensus 89 ~~al~~~p~ 97 (150)
T 4ga2_A 89 RRSVELNPT 97 (150)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 999996543
No 126
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=41.66 E-value=86 Score=21.78 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
+..|...|..+...|++++|..+|+.+++.
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555554
No 127
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=41.56 E-value=1.3e+02 Score=23.68 Aligned_cols=90 Identities=11% Similarity=-0.060 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCcccccc--HHHHHHHHHHh----cccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHH
Q 037765 45 LYKLLSNCINTFKHHSQYKND--IRFLKIWFLYL----EGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDA 118 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD--~RyLkiWi~Ya----~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A 118 (153)
-...+++++....+++..... ..+....+.+. ...+++...|.-.... ....+..|...|.++...|++++|
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHH
Confidence 455666666665444332221 33333333332 1233456777666553 445667788899999999999999
Q ss_pred HHHHHHHHhCCCCcHHHH
Q 037765 119 HMVYQIGISRKAEPLDKL 136 (153)
Q Consensus 119 ~~I~~~Gi~~~A~P~~~L 136 (153)
.+.|+..++......+.+
T Consensus 469 ~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 469 ITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhccccHHHH
Confidence 999999999775544443
No 128
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=40.80 E-value=44 Score=30.08 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+.+.|+-... +--..+.-|...|..+...|++++|.+.|+++++-+
T Consensus 96 A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 96 ALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444443332 233445555666666666666666666666666643
No 129
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=40.78 E-value=1.2e+02 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.+..|...+..+...|++++|.+.|+..++..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34455555666666666666666666666544
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=40.70 E-value=83 Score=21.29 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=28.8
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 94 ICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 94 IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
.-...+..|..-+..+...|++++|...|+.+++.
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456677778888999999999999999999884
No 131
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=40.17 E-value=59 Score=22.48 Aligned_cols=30 Identities=17% Similarity=-0.006 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
.+|.||..-|..+-..|+|++|.+-.+...
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 479999999999999999999976666554
No 132
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=39.89 E-value=99 Score=21.95 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
.+..|...|..+...|++++|...|+++++...
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 367888999999999999999999999998764
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=38.59 E-value=55 Score=22.83 Aligned_cols=32 Identities=6% Similarity=-0.100 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
.+.-+..-|..+...|++++|...|+.++...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 68 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF 68 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34556677888999999999999999999843
No 134
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=38.52 E-value=59 Score=22.02 Aligned_cols=63 Identities=13% Similarity=-0.091 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhCC
Q 037765 65 DIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVY-QIGISRK 129 (153)
Q Consensus 65 D~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~-~~Gi~~~ 129 (153)
||.....|...+.. .+++...|+.... +....+..|...|.++...|++++|.+.| +++++-.
T Consensus 61 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 34445566665543 2345666666554 55667778889999999999998877764 8888854
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=38.20 E-value=1.3e+02 Score=22.78 Aligned_cols=31 Identities=19% Similarity=0.021 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
.+..|...+.++...|++++|.+.|++.+..
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777766
No 136
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.05 E-value=1.3e+02 Score=22.64 Aligned_cols=32 Identities=13% Similarity=-0.074 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
..+.-|..-+.++...|++++|...|+++++-
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34778888999999999999999999999873
No 137
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=37.82 E-value=57 Score=20.46 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=33.0
Q ss_pred CHHHHHHHHHhCCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 81 DYEKVFREMEELEICTG-HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
++.+.|.-+....=+.. .+..+...|..+...|++++|...|+..++....
T Consensus 20 ~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 20 DASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp HHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34455555444322222 1234445677788999999999999999987644
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=37.71 E-value=83 Score=20.45 Aligned_cols=75 Identities=5% Similarity=-0.173 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++... |.....|...+.. .+++...|.-.... .-..+..+...|..+...|++++
T Consensus 35 ~A~~~~~~al~~~---------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 35 EAALAFEAVCQKE---------PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHHHHHHHHS---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 4466677777653 2234455554432 23456666655543 34456677788899999999999
Q ss_pred HHHHHHHHHhCC
Q 037765 118 AHMVYQIGISRK 129 (153)
Q Consensus 118 A~~I~~~Gi~~~ 129 (153)
|...|+.+++..
T Consensus 104 A~~~~~~al~~~ 115 (121)
T 1hxi_A 104 ALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
No 139
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=37.60 E-value=70 Score=19.57 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++...|.-.... ....+..|...|..+...|++++|...|+.++...
T Consensus 21 ~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 21 DTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3456677666553 34467778888999999999999999999998853
No 140
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=36.17 E-value=1.1e+02 Score=21.58 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 100 LLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 100 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
.++..-|..+...|++++|...|+.+++....-
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 344567888999999999999999999976443
No 141
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=35.58 E-value=54 Score=26.68 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
....|+-+...+-....+.+ --|..++..|++++|.+++..||..+-
T Consensus 85 a~~~l~~l~~~~~~~~~~~~--~la~i~~~~g~~eeAL~~l~~~i~~~~ 131 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELY--LLATAQAILGDLDKSLETCVEGIDNDE 131 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhcCCCCcHHHH--HHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 34555555555434455554 456777778888888888888887653
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=35.58 E-value=72 Score=19.09 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+++...|.-.... ....+..|...|..+...|++++|...++.+++....
T Consensus 21 ~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 21 DDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3456667666543 3445778888899999999999999999999987543
No 143
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=35.46 E-value=30 Score=18.65 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHhccCc
Q 037765 42 ATDLYKLLSNCINTFKHHS 60 (153)
Q Consensus 42 ~~~l~~lLErc~~~f~~~~ 60 (153)
+..+-+||..|+..|....
T Consensus 11 ekqieelldncietfvaek 29 (31)
T 4h62_V 11 EKQIEELLDNCIETFVAEK 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4568899999999997643
No 144
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=34.86 E-value=13 Score=36.07 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhc
Q 037765 22 PWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLE 77 (153)
Q Consensus 22 ~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~ 77 (153)
-|.+||.-.+..|-.-...-+..|..+-+.+.+.+ ++++|++|| |++=-|
T Consensus 373 ~W~~Yi~~ae~~Y~~~~~ev~~~L~~lA~~a~~l~-~~~~yk~Dp-----WL~qLD 422 (1172)
T 3ikm_A 373 NWERYLAEAQGTYEELQREMKKSLMDLANDACQLL-SGERYKEDP-----WLWDLE 422 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCSCTTSTH-----HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccCCc-----hHhhcc
Confidence 69999999888875321122456777777777765 568999999 776544
No 145
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=34.22 E-value=79 Score=23.85 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
.+..|...+.++...|++++|..+|+..+.....
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 4677889999999999999999999999986543
No 146
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=33.93 E-value=49 Score=20.86 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGK 114 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~ 114 (153)
.|-..||.||.+---|++.|..-++.-.+.|..|.
T Consensus 34 edypqifdflenvprgtktahirealrryieeige 68 (70)
T 2q2k_A 34 EDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp TTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC-
T ss_pred hhchHHHHHHHcCCCccchHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999888887663
No 147
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=33.50 E-value=1.4e+02 Score=21.84 Aligned_cols=76 Identities=11% Similarity=0.030 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++....++ ..+|...+.. .+++...|.-+... ....+..|...|..+...|++++
T Consensus 21 ~A~~~~~~~l~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 21 DALSQFHAAVDGDPDN---------YIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhhCccc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHH
Confidence 3466677776643222 2344444432 34566777766653 44556778899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 037765 118 AHMVYQIGISRKA 130 (153)
Q Consensus 118 A~~I~~~Gi~~~A 130 (153)
|..+|+.+++...
T Consensus 90 A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 90 AEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998764
No 148
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=33.40 E-value=1.2e+02 Score=20.89 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++.+.|.-.... ....+..|...|..+...|++++|.+.|+.+++..
T Consensus 54 ~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 54 TEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 3456666665543 34567778889999999999999999999999854
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.30 E-value=92 Score=19.68 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
.+..|...|..+...|++++|...|+..++....
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 3677888899999999999999999999986543
No 150
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=32.39 E-value=1.2e+02 Score=20.60 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=38.5
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+....|.-+...+.....+..|...|..+...|++++|...|+.+++....
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456777777773333445677788888999999999999999999886543
No 151
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.37 E-value=9.5 Score=30.84 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHhCCcch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCcHH----HHHHHHHHHHHHHH
Q 037765 88 EMEELEICT----GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS-----RKAEPLD----KLEEALALFIDRLS 148 (153)
Q Consensus 88 ~L~~~~IG~----~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~-----~~A~P~~----~L~~~~~~F~~R~~ 148 (153)
.|...|+|. ..|.-...=|.-+++.|+|++|...|+.||+ .+++|-. .|.++..+...|.+
T Consensus 8 ~m~ks~~g~dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE 81 (257)
T 2ymb_A 8 HMAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAE 81 (257)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhhhccCCCChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 344555554 3566677788899999999999999999998 2334433 35555555555544
No 152
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=31.99 E-value=49 Score=25.18 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHc
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELN 112 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 112 (153)
..+..||..+||...+|.|=.+|+...|+.
T Consensus 160 ~~l~~YLeeRGI~~~la~fl~~y~~~KE~~ 189 (203)
T 1yqf_A 160 NCVMTYLEKRGVDEKLGEFVVLYSFWAEQQ 189 (203)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999988764
No 153
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=31.89 E-value=67 Score=23.05 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++...|.-... +.-..+..|...+..+...|++++|.+.|+++++..
T Consensus 101 ~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 101 EQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 345566655544 334566778888999999999999999999999977
No 154
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=31.81 E-value=1.5e+02 Score=21.52 Aligned_cols=48 Identities=6% Similarity=-0.173 Sum_probs=34.2
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 130 (153)
++.+.|.-+... ....+..|...|..+...|++++|.+.|+..+....
T Consensus 73 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 120 (327)
T 3cv0_A 73 LAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120 (327)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666665553 344566777788888888888888888888887643
No 155
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=31.06 E-value=1.1e+02 Score=19.82 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHH
Q 037765 105 YAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEE 138 (153)
Q Consensus 105 wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~ 138 (153)
-.+.+-..|++++|..-|-.+|.-..+|.+.|.-
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456667899999999999999999999998864
No 156
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=30.38 E-value=52 Score=24.63 Aligned_cols=30 Identities=3% Similarity=0.068 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHc
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELN 112 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 112 (153)
..+..||..+||-..+|.|=.+|+...|+.
T Consensus 139 ~~l~~yLeeRGI~~~la~fl~~y~~~KEq~ 168 (182)
T 3jv1_A 139 DSFTSYLSARGVNDTLANFIDQFSLWSEQA 168 (182)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999988864
No 157
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=29.05 E-value=72 Score=26.80 Aligned_cols=83 Identities=5% Similarity=-0.044 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHH---hCCcc---hHHHHHHHHHHHHHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREME---ELEIC---TGHSLLYQWYAIFLEL 111 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~---~~~IG---~~~AlfYe~wA~~lE~ 111 (153)
.-.+++++++...... --.+.|--++..-..+.. .+++..+|+-.. .+--| ..+|.-|-..|.++-.
T Consensus 316 eA~~~~~~~L~i~~~~-lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 316 ELLEICELSQEKMSSV-FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHTTT-BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc-cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 3456667776654322 233444444444333322 223444443322 11223 2467788899999999
Q ss_pred cCCHHHHHHHHHHHHh
Q 037765 112 NGKWRDAHMVYQIGIS 127 (153)
Q Consensus 112 ~~~~~~A~~I~~~Gi~ 127 (153)
+|++++|...|+++++
T Consensus 395 qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 395 LENKAAGEKALKKAIA 410 (433)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999999887
No 158
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=28.74 E-value=1.9e+02 Score=21.76 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEP 132 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 132 (153)
..+..+...|..+...|++++|...|+..++.....
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 345667788999999999999999999999976443
No 159
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=28.54 E-value=57 Score=24.86 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHc
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELN 112 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 112 (153)
..+..||..+||-..+|.|=..|+...|+.
T Consensus 164 ~~l~~yLeeRGI~~~la~fl~~y~~~KE~~ 193 (209)
T 1p32_A 164 DHLMDFLADRGVDNTFADELVELSTALEHQ 193 (209)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999888764
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=28.52 E-value=84 Score=23.01 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 96 TGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 96 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+..|..+..-+..+...|+|++|.+-|+++|.
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~ 39 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAME 39 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=28.44 E-value=1.9e+02 Score=21.71 Aligned_cols=47 Identities=6% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFID 145 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~ 145 (153)
+.+|...|..+...|++++|.+.|+++++....-..-+...-..+..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
No 162
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=28.41 E-value=36 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 037765 134 DKLEEALALFIDRLSERLQK 153 (153)
Q Consensus 134 ~~L~~~~~~F~~R~~~~~~~ 153 (153)
.+|.++-+.||+||.+-++|
T Consensus 21 ~kLr~sr~RFQ~~Mq~lieK 40 (81)
T 3r45_C 21 QKLRASRRRFQRRMQRLIEK 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677778899999886653
No 163
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=28.01 E-value=44 Score=25.44 Aligned_cols=62 Identities=5% Similarity=-0.071 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 66 IRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 66 ~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
|....+|+.++.. .+++.+.|.-+....=+..-+.-+...+.++...|+..+|...|++.+.
T Consensus 216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 3344556666553 3457788888888776665577788899999999999999999998875
No 164
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=27.66 E-value=1.1e+02 Score=24.17 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 94 ICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 94 IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.....+..|-..|.++...|++++|...|++.++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456678888999999999999999999998876
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=27.42 E-value=1.2e+02 Score=19.08 Aligned_cols=75 Identities=8% Similarity=-0.155 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHH
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRD 117 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 117 (153)
.-...+++++....++ ..+|...+.. .+++...|.-... +....+..|...|..+...|++++
T Consensus 27 ~A~~~~~~al~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~ 95 (137)
T 3q49_B 27 EAAACYGRAITRNPLV---------AVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDE 95 (137)
T ss_dssp HHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhCcCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHHhhHHH
Confidence 3456677777664332 2344444432 3345666666655 445577788889999999999999
Q ss_pred HHHHHHHHHhCC
Q 037765 118 AHMVYQIGISRK 129 (153)
Q Consensus 118 A~~I~~~Gi~~~ 129 (153)
|...|+.++...
T Consensus 96 A~~~~~~a~~~~ 107 (137)
T 3q49_B 96 AIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
Confidence 999999999743
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=26.28 E-value=1.3e+02 Score=19.35 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+++...|.-.... --..+..|...+..+...|++++|...|++++.....
T Consensus 34 ~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 34 AEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3455666655543 3345666777888999999999999999999996543
No 167
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=25.99 E-value=1.5e+02 Score=19.85 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++...|...... ....+..|...+..+...|++++|.+.|++++...
T Consensus 38 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 38 EDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456666665543 34456667778899999999999999999999854
No 168
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.85 E-value=1.3e+02 Score=25.54 Aligned_cols=53 Identities=13% Similarity=-0.013 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcH
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPL 133 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~ 133 (153)
+++.++|..|...||--... -|..-=..+.+.|+.++|.+||..=.+.+-.|-
T Consensus 122 ~~A~~l~~~M~~~g~~Pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 122 EMAFDMVKQMKAFGIQPRLR-SYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHcCCCCccc-eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 45667777777777654332 344444555667777777777777777766663
No 169
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=25.78 E-value=2.9e+02 Score=23.04 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCccccccHHHHHHH---HHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037765 47 KLLSNCINTFKHHSQYKNDIRFLKIW---FLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQ 123 (153)
Q Consensus 47 ~lLErc~~~f~~~~~Y~nD~RyLkiW---i~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~ 123 (153)
.-+.+.++.-...+.=.+|++....- ..+..-.+.....+.-....+ ..++-|..-+.+++..|++++|.+-|.
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444433344446788876652 222333445566666666665 457788888999999999999999999
Q ss_pred HHHhCCCCcH
Q 037765 124 IGISRKAEPL 133 (153)
Q Consensus 124 ~Gi~~~A~P~ 133 (153)
+++.-+..|-
T Consensus 335 ~AlrL~P~~~ 344 (372)
T 3ly7_A 335 TAFNLRPGAN 344 (372)
T ss_dssp HHHHHSCSHH
T ss_pred HHHhcCCCcC
Confidence 9998865553
No 170
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=25.72 E-value=1.9e+02 Score=23.40 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=37.9
Q ss_pred HHHHHHhcc---cCCHHHHHHHHHhCCcch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037765 70 KIWFLYLEG---SKDYEKVFREMEELEICT-GHSLLYQWYAIFLELNGKWRDAHMVYQIGI 126 (153)
Q Consensus 70 kiWi~Ya~~---~~d~~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 126 (153)
.-|+..+.- ..++..+|+-|..+.-.. ...+.|. ..+..|++++|.++++.-+
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHH
Confidence 467777654 557889999987665431 3334444 7889999999999998543
No 171
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=25.53 E-value=2.2e+02 Score=21.46 Aligned_cols=79 Identities=5% Similarity=-0.083 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHHh----CCcchHHHHHHHHHHHHHHHcCC
Q 037765 45 LYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREMEE----LEICTGHSLLYQWYAIFLELNGK 114 (153)
Q Consensus 45 l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~ 114 (153)
=...+++++..+..... ...-..++...+.. .+++.+.|.-... .+.-...+..|..-+..+...|+
T Consensus 134 A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 35667777777655421 12233455554442 2345566655544 22223456688888889999999
Q ss_pred HHHHHHHHHHHH
Q 037765 115 WRDAHMVYQIGI 126 (153)
Q Consensus 115 ~~~A~~I~~~Gi 126 (153)
+++|...|++.+
T Consensus 211 ~~~A~~~~~~al 222 (307)
T 2ifu_A 211 YVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999999
No 172
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=25.47 E-value=96 Score=22.19 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
++.....-|.++...|++.+|...|+..|+....
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 3344456788899999999999999999987644
No 173
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=25.15 E-value=1.7e+02 Score=29.48 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------CCCCcHHHHHHHHHHHHHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGIS----------------RKAEPLDKLEEALALFIDRLS 148 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~----------------~~A~P~~~L~~~~~~F~~R~~ 148 (153)
.+.++++-+.+++..|.|++|..+++.|+. .+.+| ++|.+..+.|..|+.
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p-eklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVN 1344 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH-HHHHHHHHHHHHhcc
Confidence 577899999999999999999999999965 34444 445556666776653
No 174
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.06 E-value=1.5e+02 Score=25.01 Aligned_cols=53 Identities=9% Similarity=-0.064 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHH
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLD 134 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~ 134 (153)
.+.++|..|...||--... -|-.--..+.+.|+.++|.++|..=.+.+-.|-.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEA-TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 4679999999999875543 4677777888999999999999988888877754
No 175
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=24.98 E-value=25 Score=26.34 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=42.6
Q ss_pred HHHHHhccCccccccHHHHHHHHHHhcccCCHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Q 037765 51 NCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLE 110 (153)
Q Consensus 51 rc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE 110 (153)
.+++.+++.+.-+.|.=-.|.||..|=+..--...++.|.++. .-+..||+.||.+..
T Consensus 88 ~~~~~v~~l~~i~T~~Gr~RawIR~aL~ek~L~~~l~~l~~~~--~~l~~~Y~~~All~~ 145 (180)
T 2dwk_A 88 EITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK--ELLSEFYEVNALMME 145 (180)
T ss_dssp HHHHHHHTCTTCCSHHHHHHHHHHHHHHHTCHHHHHHHHHTCH--HHHTTTBCTTSGGGS
T ss_pred HHHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHHHHHhCh--HHHHhhCCCCccccC
Confidence 3555666777788887778999998866555666777777663 457889999998754
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=24.56 E-value=95 Score=26.51 Aligned_cols=84 Identities=11% Similarity=0.035 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcc------cCCHHHHHHHHH---hCCcch---HHHHHHHHHHHHHH
Q 037765 43 TDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEG------SKDYEKVFREME---ELEICT---GHSLLYQWYAIFLE 110 (153)
Q Consensus 43 ~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~------~~d~~~if~~L~---~~~IG~---~~AlfYe~wA~~lE 110 (153)
..-.+++++++...... --.+.|-.++..-..+.. .+++..+++-.. .+--|. .+|.-|-..|.++-
T Consensus 326 ~eA~~l~~~aL~~~~~~-lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPV-FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHTTT-BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34566777777764332 234556666665554432 234444444322 222233 37888999999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 037765 111 LNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 111 ~~~~~~~A~~I~~~Gi~ 127 (153)
.+|++++|...|++.+.
T Consensus 405 ~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 405 HAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999999987
No 177
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=24.56 E-value=1.3e+02 Score=18.47 Aligned_cols=33 Identities=15% Similarity=-0.046 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 99 SLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 99 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+..|...|..+...|++++|.+.|+.+++....
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 566777888899999999999999999986543
No 178
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=24.26 E-value=91 Score=27.99 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 037765 100 LLYQWYAIFLELNGKWRDAHMVYQIGISR 128 (153)
Q Consensus 100 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 128 (153)
.-|...|..+...|++++|.+.|+++|+-
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555553
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=23.66 E-value=2.8e+02 Score=22.07 Aligned_cols=38 Identities=5% Similarity=-0.139 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 94 ICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 94 IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+....+..|...|..+...|++++|.+.|+++++....
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 55667889999999999999999999999999986543
No 180
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=23.60 E-value=2.1e+02 Score=20.63 Aligned_cols=34 Identities=9% Similarity=-0.099 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
.+..|...+..+...|++++|.+.|+..++....
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 4455566788888999999999999999987543
No 181
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=23.27 E-value=2.6e+02 Score=21.65 Aligned_cols=48 Identities=6% Similarity=-0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFID 145 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~ 145 (153)
.+..|...|.++...|++++|.+.|++.++....-..-+...=..+..
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 242 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
No 182
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=23.14 E-value=1.4e+02 Score=22.35 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=42.3
Q ss_pred HHHhccCccccccHHHHHHHHHHhcccCC---HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 53 INTFKHHSQYKNDIRFLKIWFLYLEGSKD---YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 53 ~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d---~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
++..-+.+.|.+=+.-..+=+...+...+ |..-| ....-+|..+...|+|.+|...|+..++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~-------------~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKY-------------QLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHH-------------HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34444667777666666665555544333 44444 3445689999999999999999999766
No 183
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=23.10 E-value=1e+02 Score=25.84 Aligned_cols=36 Identities=11% Similarity=-0.165 Sum_probs=29.5
Q ss_pred CCcchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 92 LEICTG---HSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 92 ~~IG~~---~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
+-.|.. +|.-|..-|..+..+|+|++|...|++.+.
T Consensus 330 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 330 SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 444544 566778889999999999999999999886
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=23.08 E-value=1.2e+02 Score=17.48 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 037765 82 YEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAE 131 (153)
Q Consensus 82 ~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 131 (153)
+...|.-.... ....+..|...|..+...|++++|.+.|+++++....
T Consensus 28 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 28 AIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34444444432 2233556677888999999999999999999986543
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=21.83 E-value=2.3e+02 Score=21.97 Aligned_cols=48 Identities=4% Similarity=-0.208 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 037765 80 KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 80 ~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 129 (153)
+++...|.-.... ....+..|-..|..+...|++++|.+.|+++++..
T Consensus 247 ~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 247 DEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566677666543 34556667778888999999999999999998754
No 186
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=21.63 E-value=3.1e+02 Score=22.04 Aligned_cols=103 Identities=10% Similarity=0.064 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCC-------H--HHHHHHHHhCCcchHHHHHHHHHHHHHHHcCC
Q 037765 44 DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKD-------Y--EKVFREMEELEICTGHSLLYQWYAIFLELNGK 114 (153)
Q Consensus 44 ~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d-------~--~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~ 114 (153)
.++..|+..+.++....-...++-.+..+....+...+ + .-+|-+|.+.|+.. .--.=|+..-+-...
T Consensus 23 ~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~---p~~vM~~eHd~~r~~ 99 (369)
T 3cax_A 23 KDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTV---IATVLWTKHDEIRAM 99 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCC---CCchHHHHhHHHHHH
Confidence 45667777777776655433233444444443332222 2 25799998777663 333345555555555
Q ss_pred HHHHHHHHHHHHhCCCCc----HHHHHHHHHHHHHHHHHhhc
Q 037765 115 WRDAHMVYQIGISRKAEP----LDKLEEALALFIDRLSERLQ 152 (153)
Q Consensus 115 ~~~A~~I~~~Gi~~~A~P----~~~L~~~~~~F~~R~~~~~~ 152 (153)
.+++.+....+ .+-| ...+......|...+.+++.
T Consensus 100 l~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~l~~Hi~ 138 (369)
T 3cax_A 100 IKQLAELLRKR---EEMPWEEFVEKFKAKAGEVAFALSDMVF 138 (369)
T ss_dssp HHHHHHHHHTG---GGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555431 1356 78888889999988888764
No 187
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=21.32 E-value=1e+02 Score=23.89 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhCCCCcHHHHHH
Q 037765 114 KWRDAHMVYQIGISRKAEPLDKLEE 138 (153)
Q Consensus 114 ~~~~A~~I~~~Gi~~~A~P~~~L~~ 138 (153)
.|+.|.+.|+.++.+++-| ..+++
T Consensus 18 ~YE~A~~~Ye~a~~ng~~p-Q~~Kq 41 (199)
T 3ub0_A 18 AYEKARADLEEAKKNDVSP-QLLKQ 41 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHH
T ss_pred HHHHHHHHHHHHHhcCCCH-HHHHH
Confidence 4789999999999999888 44444
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=21.30 E-value=20 Score=30.15 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------CCCcHHHHHHHHHHHHHHHHH
Q 037765 98 HSLLYQWYAIFLELNGKWRDAHMVYQIGISR----------KAEPLDKLEEALALFIDRLSE 149 (153)
Q Consensus 98 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~----------~A~P~~~L~~~~~~F~~R~~~ 149 (153)
-|.=+..=|.-++..|+|++|...|+.||+- +.+..+.++++..+++.|.+.
T Consensus 10 ~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~ 71 (444)
T 2zan_A 10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK 71 (444)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH
Confidence 3444555667778889999999988888873 111245577888888777654
No 189
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=20.94 E-value=1.3e+02 Score=25.05 Aligned_cols=31 Identities=6% Similarity=-0.012 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 037765 97 GHSLLYQWYAIFLELNGKWRDAHMVYQIGIS 127 (153)
Q Consensus 97 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 127 (153)
.+|.-|-..|.++-.+|++++|...|++.++
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3677788999999999999999999999987
No 190
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=20.21 E-value=1.1e+02 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHc
Q 037765 83 EKVFREMEELEICTGHSLLYQWYAIFLELN 112 (153)
Q Consensus 83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 112 (153)
..+..||..+||-..+|.|=..|+...|+.
T Consensus 184 ~~l~~yLeeRGI~~~la~fl~~y~~~KEq~ 213 (227)
T 3qv0_A 184 ESLEAYLESRGVNEELASFISAYSEFKENN 213 (227)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999988764
No 191
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=20.09 E-value=2.5e+02 Score=20.16 Aligned_cols=45 Identities=4% Similarity=-0.050 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhCCcchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 037765 81 DYEKVFREMEELEICTGHSLLYQWYAIFLEL----NGKWRDAHMVYQIGISRK 129 (153)
Q Consensus 81 d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~----~~~~~~A~~I~~~Gi~~~ 129 (153)
.+.+.|.-....+ .+.-+...+.++.. .+++++|.+.|+++++.+
T Consensus 96 ~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 96 KALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 3456666555543 44555666777777 888888888888888765
Done!