BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037768
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 80/101 (79%), Gaps = 2/101 (1%)
Query: 12 SVDPYVVLTCRTQEQKSSIGSGSG--PEWNETFVFTITGDVTELTLKIMDKDTFSNDDYL 69
++DPYV LTCRTQ+QKS++ G G PEWNETF+FT++ TEL KI DKD + DD +
Sbjct: 30 NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAV 89
Query: 70 GEATISLEPLFMEGSLPPTAYNVVKNQEYCGEIRVGLTFTP 110
GEATI LEP+F+EGS+PPTAYNVVK++EY GEI V L+F P
Sbjct: 90 GEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKP 130
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 9 LAGSVDPYVVLTCR-------TQEQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKD 61
+ G+ DPYV +T T Q +I P+WNE +F + L ++ D++
Sbjct: 37 ILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN 96
Query: 62 TFSNDDYLGEATISLEPL------------FMEGSLPPTAYNVVKNQEYCGEIRVGLTFT 109
+ DD+LG+ + L PL F + L P ++ G +R+ +T+
Sbjct: 97 RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH----KSRVKGYLRLKMTYL 152
Query: 110 P 110
P
Sbjct: 153 P 153
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 23/122 (18%)
Query: 9 LAGSVDPYVVLTCR-------TQEQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKD 61
+ G+ DPYV +T T Q +I P+WNE +F + + ++ D++
Sbjct: 25 ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDEN 84
Query: 62 TFSNDDYLGEATISLEPL------------FMEGSLPPTAYNVVKNQEYCGEIRVGLTFT 109
+ DD+LG+ + L PL F + L P ++ G +R+ +T+
Sbjct: 85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH----KSRVKGYLRLKMTYL 140
Query: 110 PE 111
P+
Sbjct: 141 PK 142
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 11 GSVDPYVVLTCRTQE--------QKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKDT 62
G+ DPYV L+ + Q +I P+WNE F F + L ++ D++
Sbjct: 40 GASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENR 99
Query: 63 FSNDDYLGEATISLEPL 79
+ DD+LG+ + L L
Sbjct: 100 LTRDDFLGQVDVPLSHL 116
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 11 GSVDPYVVLT------CRTQEQKSSIGSGSGPEWNETFVFTI--TGDVTELTLKIMDKDT 62
G DPYV L ++++ +I S PEWNETF F + + L+++I D D
Sbjct: 191 GLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250
Query: 63 FSNDDYLGEATISLEPLFMEG 83
S +D++G + + L G
Sbjct: 251 TSRNDFMGSLSFGISELQKAG 271
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 11 GSVDPYVVLTC------RTQEQKSSIGSGSGPEWNETFVFTIT-GDV-TELTLKIMDKDT 62
G DPYV L T+++ ++ + P WNETFVF + GDV L++++ D D
Sbjct: 39 GLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDR 98
Query: 63 FSNDDYLGEATISLEPLFMEGSLPPTAYNVVKNQE 97
S +D++G + + L P + + NQE
Sbjct: 99 TSRNDFMGAMSFGVSELL---KAPVDGWYKLLNQE 130
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 11 GSVDPYVVLTC------RTQEQKSSIGSGSGPEWNETFVFTI--TGDVTELTLKIMDKDT 62
G DPYV L ++++ +I S P+WNE+F F + + L+++I D D
Sbjct: 35 GLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDR 94
Query: 63 FSNDDYLGEATISLEPLFMEGSLPPTAYNVVKNQE 97
+ +D++G + + L +P + + + NQE
Sbjct: 95 TTRNDFMGSLSFGVSELM---KMPASGWYKLLNQE 126
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 11 GSVDPYVVLTC------RTQEQKSSIGSGSGPEWNETFVFTI--TGDVTELTLKIMDKDT 62
G DPYV L ++++ +I S P+WNE+F F + + L+++I D D
Sbjct: 36 GLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDR 95
Query: 63 FSNDDYLGEATISLEPLFMEGSLPPTAYNVVKNQE 97
+ +D++G + + L +P + + + NQE
Sbjct: 96 TTRNDFMGSLSFGVSELM---KMPASGWYKLLNQE 127
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 11 GSVDPYVVLT------CRTQEQKSSIGSGSGPEWNETFVFTI--TGDVTELTLKIMDKDT 62
G DPYV L ++++ +I PEWNETF F + + L+++I D D
Sbjct: 50 GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109
Query: 63 FSNDDYLGEATISLEPLFMEG 83
S +D++G + + L G
Sbjct: 110 TSRNDFMGSLSFGISELQKAG 130
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 9 LAGSVDPYV---VLTCRTQEQKSSIGSGS-GPEWNETFVF------TITGDVTELTLKIM 58
+G+ DP+V +L + + ++ + + P WNETF+F + + L L+++
Sbjct: 43 FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRI--LYLQVL 100
Query: 59 DKDTFSNDDYLGEATISL 76
D D FS +D +GE +I L
Sbjct: 101 DYDRFSRNDPIGEVSIPL 118
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 9 LAGSVDPYVVLTCRTQE-QKSSIGSGSGPEWNETFVFTIT--GDVTELTLKIMDKDTFSN 65
+G DP+ +L Q ++ PEWN+ F F I DV E+T + D+D
Sbjct: 30 FSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVT--VFDEDGDKP 87
Query: 66 DDYLGEATISLEPLFMEGSLPPTAYNVVKNQE 97
D+LG+ I PL P Y V+KN++
Sbjct: 88 PDFLGKVAI---PLLSIRDGQPNCY-VLKNKD 115
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 11 GSVDPYVVLTC------RTQEQKSSIGSGSGPEWNETFVFTI--TGDVTELTLKIMDKDT 62
G DPYV L ++++ +I S P+WNE+F F + + L+++I D D
Sbjct: 37 GLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDR 96
Query: 63 FSNDDYLGEATISLEPLFMEGSLPPTAYNVVKNQE 97
+ +D+ G + + L P + + + NQE
Sbjct: 97 TTRNDFXGSLSFGVSELX---KXPASGWYKLLNQE 128
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 11 GSVDPYV-VLTCRTQEQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKD-------- 61
GS DPYV V +T+++ +I P W E F F + ++++D+D
Sbjct: 36 GSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVK 95
Query: 62 ---TFSNDDYLGEATISLEPLFMEGSLPPTAYNVVKNQEY---CGEIRVGLT 107
+DD+LG+ I + L E + YN+ K + G IR+ ++
Sbjct: 96 QRFKRESDDFLGQTIIEVRTLSGEMDV---WYNLDKRTDKSAVSGAIRLHIS 144
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 11 GSVDPYVVLTCRTQEQKS-SIGSGSGPEWN---ETFVFTITGDVTELTLKIMDKDTFSND 66
G +PY ++ +Q + +I P+WN + F+ + DV L L + D+D FS D
Sbjct: 406 GKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDV--LCLTLFDRDQFSPD 463
Query: 67 DYLGEATISLEPLFMEG-SLPPTAYNVVKNQEYCGEIRV 104
D+LG I + + E S P ++ ++ GE+ V
Sbjct: 464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWV 502
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 11 GSVDPYVVLTCRTQEQKS------SIGSGSGPEWNETFVFT--ITGDVTELTLKI--MDK 60
G DPYV L KS ++ + P WNET + D+ TL+I D+
Sbjct: 46 GLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE 105
Query: 61 DTFSNDDYLGEATISLEPL 79
D F +++++GE SL+ L
Sbjct: 106 DKFGHNEFIGETRFSLKKL 124
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 11 GSVDPYVVLTCRTQEQKS------SIGSGSGPEWNETFVFT--ITGDVTELTLKI--MDK 60
G DPYV L KS ++ + P WNET + D+ TL+I D+
Sbjct: 48 GLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE 107
Query: 61 DTFSNDDYLGEATISLEPL 79
D F +++++GE SL+ L
Sbjct: 108 DKFGHNEFIGETRFSLKKL 126
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 7 FILAGSVDPYVVLTCRTQEQKSS--IGSGSGPEWNETFVF-TITGD---VTELTLKIMDK 60
++L G VV + ++ + + PEWN+T ++ +I+ + L + + D
Sbjct: 46 YLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDY 105
Query: 61 DTFSNDDYLGEATISL 76
D FS++D+LGE I L
Sbjct: 106 DRFSSNDFLGEVLIDL 121
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 14 DPYVVLTC---RTQEQKSSIGSGS-GPEWNETFVF--TITGDVTELTLK--IMDKDTFSN 65
DPY+ +T + + K+ + + P ++ETF F + EL L I+ D FS
Sbjct: 45 DPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSR 104
Query: 66 DDYLGEATISL 76
DD +GE I L
Sbjct: 105 DDIIGEVLIPL 115
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 14 DPYVVL----TCRTQEQKSSIGSGSGPEWNETFVFTI---TGDVTELTLKIMDKDTFSND 66
DPYV L T ++++ + P WNETF F + +V E+TL MD + + D
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL--MDAN-YVMD 99
Query: 67 DYLGEATISLEPL 79
+ LG AT ++ +
Sbjct: 100 ETLGTATFTVSSM 112
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 14 DPYVVL----TCRTQEQKSSIGSGSGPEWNETFVFTI---TGDVTELTLKIMDKDTFSND 66
DPYV L T ++++ + P WNETF F + +V E+TL MD + + D
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL--MDAN-YVMD 84
Query: 67 DYLGEATISLEPL 79
+ LG AT ++ +
Sbjct: 85 ETLGTATFTVSSM 97
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 14 DPYVVL----TCRTQEQKSSIGSGSGPEWNETFVFTI---TGDVTELTLKIMDKDTFSND 66
DPYV L T ++++ + P WNETF F + +V E+TL MD + + D
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL--MDAN-YVMD 99
Query: 67 DYLGEATISL 76
+ LG AT ++
Sbjct: 100 ETLGTATFTV 109
>pdb|1ERI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease-Dna
Recognition Complex: The Recognition Network And The
Integration Of Recognition And Cleavage
pdb|1CKQ|A Chain A, Pre-Transition State Eco Ri EndonucleaseCOGNATE DNA
(Tcgcgaattcgcg) Complex
pdb|1CL8|A Chain A, A Pre-Transition State Eco Ri EndonucleaseCOGNATE DNA
(Tcgcgapttcgcg) Complex With Dna Base Analog Purine (P)
pdb|1QC9|A Chain A, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
pdb|1QC9|B Chain B, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
pdb|1QC9|C Chain C, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
Length = 276
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 33 GSGPEWNETFVFTITGDVTELTLKIMDKDTF 63
G G EW+ +F I D++ +L+++ +D F
Sbjct: 240 GDGREWDSKIMFEIMFDISTTSLRVLGRDLF 270
>pdb|2OXV|A Chain A, Structure Of The A138t Promiscuous Mutant Of The Ecori
Restriction Endonuclease Bound To Its Cognate
Recognition Site
Length = 277
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 33 GSGPEWNETFVFTITGDVTELTLKIMDKDTF 63
G G EW+ +F I D++ +L+++ +D F
Sbjct: 241 GDGREWDSKIMFEIMFDISTTSLRVLGRDLF 271
>pdb|1QPS|A Chain A, The Crystal Structure Of A Post-Reactive Cognate Dna-Eco
Ri Complex At 2.50 A In The Presence Of Mn2+ Ion
Length = 261
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 33 GSGPEWNETFVFTITGDVTELTLKIMDKDTF 63
G G EW+ +F I D++ +L+++ +D F
Sbjct: 225 GDGREWDSKIMFEIMFDISTTSLRVLGRDLF 255
>pdb|1QRI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease Complexes
With An E144d Mutation At 2.7 A
Length = 261
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 33 GSGPEWNETFVFTITGDVTELTLKIMDKDTF 63
G G EW+ +F I D++ +L+++ +D F
Sbjct: 225 GDGREWDSKIMFEIMFDISTTSLRVLGRDLF 255
>pdb|1QRH|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease Complexes
With An R145k Mutation At 2.7 A
Length = 261
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 33 GSGPEWNETFVFTITGDVTELTLKIMDKDTF 63
G G EW+ +F I D++ +L+++ +D F
Sbjct: 225 GDGREWDSKIMFEIMFDISTTSLRVLGRDLF 255
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 9 LAGSVDPYV---VLTCRTQEQKSSIGSGS-GPEWNETFVFTI----TGDVTELTLKIMDK 60
+ G+ DPYV +L + ++ ++ + + P +NE F F + G T L + + D
Sbjct: 34 MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT-LVMAVYDF 92
Query: 61 DTFSNDDYLGEATISL 76
D FS D +GE + +
Sbjct: 93 DRFSKHDIIGEFKVPM 108
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 9 LAGSVDPYV---VLTCRTQEQKSSIGSGS-GPEWNETFVFTI----TGDVTELTLKIMDK 60
+ G+ DPYV +L + ++ ++ + + P +NE F F + G T L + + D
Sbjct: 51 MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT-LVMAVYDF 109
Query: 61 DTFSNDDYLGEATISL 76
D FS D +GE + +
Sbjct: 110 DRFSKHDIIGEFKVPM 125
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 9 LAGSVDPYV---VLTCRTQEQKSSIGSGS-GPEWNETFVFTI----TGDVTELTLKIMDK 60
+ G+ DPYV +L + ++ ++ + + P +NE F F + G T L + + D
Sbjct: 59 MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT-LVMAVYDF 117
Query: 61 DTFSNDDYLGEATISL 76
D FS D +GE + +
Sbjct: 118 DRFSKHDIIGEFKVPM 133
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 9 LAGSVDPYV---VLTCRTQEQKSSIGSGS-GPEWNETFVFTI----TGDVTELTLKIMDK 60
+ G+ DPYV +L + ++ ++ + + P +NE F F + G T L + + D
Sbjct: 51 MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT-LVMAVYDF 109
Query: 61 DTFSNDDYLGEATISL 76
D FS D +GE + +
Sbjct: 110 DRFSKHDIIGEFKVPM 125
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 9 LAGSVDPYV---VLTCRTQEQKSSIGSGS-GPEWNETFVFTI-----TGDVTELTLKIMD 59
+ G+ DPYV +L + ++ ++ + + P +NE F F + G L + + D
Sbjct: 36 MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKT--LVMAVYD 93
Query: 60 KDTFSNDDYLGEATISL 76
D FS D +GE + +
Sbjct: 94 FDRFSKHDIIGEFKVPM 110
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 14 DPYVVL------TCRTQEQKSSIGSGSGPEWNETFVFT------ITGDVTELTLKIMDKD 61
+PYV + + + + + ++ P+WN+TF+++ + E+TL +
Sbjct: 40 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 99
Query: 62 TFSNDDYLGEATISLEPLFMEGSLPPTAYNV 92
++LGE I LE ++ P Y +
Sbjct: 100 REEESEFLGEILIELETALLDDE--PHWYKL 128
>pdb|1UQW|A Chain A, Crystal Structure Of Ylib Protein From Escherichia Coi
pdb|1UQW|B Chain B, Crystal Structure Of Ylib Protein From Escherichia Coi
Length = 509
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 70 GEATISLEPLFMEGSLPPTAYN 91
GEA +L PLF + PPT +N
Sbjct: 411 GEADWALSPLFASQNWPPTLFN 432
>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJS|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 167
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 16 YVVLTCRTQEQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATIS 75
YV L + E + GS P W + F+F I LT+++ +K D +G I
Sbjct: 35 YVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIP 93
Query: 76 LEPLFMEGSLPPTAY------NVVKNQEYCG 100
L + P + ++ + E CG
Sbjct: 94 LRTIRQSNEEGPGEWLTLDSQAIMADSEICG 124
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 14 DPYVVL------TCRTQEQKSSIGSGSGPEWNETFVFT------ITGDVTELTLKIMDKD 61
+PYV + + + + + ++ P+WN+TF+++ + E+TL +
Sbjct: 43 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 102
Query: 62 TFSNDDYLGEATISLEPLFMEGSLPPTAYNV 92
++LGE I LE ++ P Y +
Sbjct: 103 REEESEFLGEILIELETALLDDE--PHWYKL 131
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
Length = 131
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 14 DPYVVLTCRTQEQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEAT 73
+ YV L + + + GS P W + F+F I LT+++ +K D +G
Sbjct: 24 NTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVW 82
Query: 74 ISLEPLFMEGSLPPTAY------NVVKNQEYCG 100
I L + P + ++ + E CG
Sbjct: 83 IPLRTIRQSNEEGPGEWLTLDSQAIMADSEICG 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,357,966
Number of Sequences: 62578
Number of extensions: 125864
Number of successful extensions: 236
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 38
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)