Query 037768
Match_columns 111
No_of_seqs 116 out of 1091
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 2.8E-25 6.1E-30 128.2 12.8 98 10-108 19-121 (121)
2 cd04022 C2A_MCTP_PRT_plant C2 99.9 2.1E-22 4.6E-27 117.4 13.4 101 10-110 18-127 (127)
3 cd08682 C2_Rab11-FIP_classI C2 99.9 1.1E-22 2.4E-27 118.4 11.6 99 9-107 16-126 (126)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 3.3E-22 7.1E-27 115.7 12.2 101 9-110 17-121 (121)
5 cd08678 C2_C21orf25-like C2 do 99.9 1.5E-21 3.2E-26 113.7 13.1 101 9-110 14-121 (126)
6 cd08681 C2_fungal_Inn1p-like C 99.9 6.3E-22 1.4E-26 114.0 11.3 98 9-108 18-118 (118)
7 cd08379 C2D_MCTP_PRT_plant C2 99.9 6.4E-22 1.4E-26 114.9 11.1 96 8-104 19-125 (126)
8 cd04052 C2B_Tricalbin-like C2 99.9 9.1E-22 2E-26 112.3 11.0 104 5-111 5-111 (111)
9 cd04044 C2A_Tricalbin-like C2 99.9 8.6E-22 1.9E-26 114.2 11.1 101 10-110 21-124 (124)
10 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 2.4E-21 5.3E-26 112.0 12.1 98 10-108 19-121 (121)
11 cd08373 C2A_Ferlin C2 domain f 99.9 4.4E-21 9.4E-26 111.8 13.2 102 9-111 11-118 (127)
12 cd08378 C2B_MCTP_PRT_plant C2 99.9 2.3E-21 4.9E-26 112.2 11.3 96 12-108 16-119 (121)
13 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 4.1E-21 8.9E-26 112.7 11.7 101 9-109 17-133 (133)
14 cd08376 C2B_MCTP_PRT C2 domain 99.9 6.4E-21 1.4E-25 109.5 11.9 96 10-109 18-115 (116)
15 cd04024 C2A_Synaptotagmin-like 99.9 6.9E-21 1.5E-25 111.0 11.5 99 10-108 21-128 (128)
16 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.2E-20 2.6E-25 112.7 12.4 102 9-110 17-133 (150)
17 cd08400 C2_Ras_p21A1 C2 domain 99.9 2.8E-20 6.1E-25 108.3 13.2 99 11-111 20-125 (126)
18 cd08377 C2C_MCTP_PRT C2 domain 99.9 2.6E-20 5.7E-25 107.3 12.7 98 9-109 18-119 (119)
19 cd08375 C2_Intersectin C2 doma 99.9 2.2E-20 4.7E-25 110.0 12.5 100 9-108 32-135 (136)
20 KOG1030 Predicted Ca2+-depende 99.9 4E-21 8.6E-26 114.1 9.3 73 10-82 24-97 (168)
21 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 2.6E-20 5.7E-25 107.7 12.5 99 9-107 17-120 (121)
22 cd04017 C2D_Ferlin C2 domain f 99.9 3.3E-20 7E-25 109.2 12.8 102 9-110 18-133 (135)
23 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 4.4E-20 9.5E-25 107.0 12.4 96 10-106 18-122 (123)
24 cd04015 C2_plant_PLD C2 domain 99.9 5.1E-20 1.1E-24 110.9 12.6 99 9-109 54-158 (158)
25 cd08391 C2A_C2C_Synaptotagmin_ 99.8 4.2E-20 9E-25 106.7 11.4 94 11-108 26-121 (121)
26 cd08382 C2_Smurf-like C2 domai 99.8 1.9E-19 4.1E-24 104.4 12.3 97 9-106 17-122 (123)
27 cd04046 C2_Calpain C2 domain p 99.8 3.5E-19 7.5E-24 103.7 12.8 98 9-110 20-123 (126)
28 cd04036 C2_cPLA2 C2 domain pre 99.8 1.3E-19 2.8E-24 104.5 10.8 96 10-109 18-118 (119)
29 cd04014 C2_PKC_epsilon C2 doma 99.8 5.1E-19 1.1E-23 103.7 13.1 95 11-110 33-130 (132)
30 cd04010 C2B_RasA3 C2 domain se 99.8 1.2E-19 2.6E-24 108.0 10.1 84 10-93 16-121 (148)
31 cd08394 C2A_Munc13 C2 domain f 99.8 2.1E-19 4.6E-24 103.7 10.5 82 11-93 18-100 (127)
32 cd08677 C2A_Synaptotagmin-13 C 99.8 9.8E-20 2.1E-24 104.1 8.9 82 10-92 29-118 (118)
33 cd04051 C2_SRC2_like C2 domain 99.8 1.6E-19 3.5E-24 104.9 9.0 95 10-104 18-125 (125)
34 cd04027 C2B_Munc13 C2 domain s 99.8 1.1E-18 2.4E-23 101.7 12.2 94 10-106 19-127 (127)
35 cd08381 C2B_PI3K_class_II C2 d 99.8 4.7E-19 1E-23 102.6 10.0 82 10-92 30-121 (122)
36 cd04028 C2B_RIM1alpha C2 domai 99.8 1.3E-18 2.8E-23 103.2 10.3 85 10-95 48-139 (146)
37 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.2E-18 2.5E-23 101.7 9.8 82 11-92 35-127 (128)
38 cd04050 C2B_Synaptotagmin-like 99.8 1.2E-18 2.6E-23 98.5 9.5 84 9-95 17-103 (105)
39 cd08395 C2C_Munc13 C2 domain t 99.8 1.4E-18 2.9E-23 100.2 9.8 82 11-93 18-111 (120)
40 cd08688 C2_KIAA0528-like C2 do 99.8 1.4E-18 3.1E-23 98.9 9.3 84 10-93 18-108 (110)
41 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.2E-18 2.7E-23 101.2 9.0 82 11-93 35-125 (125)
42 cd04043 C2_Munc13_fungal C2 do 99.8 9E-18 1.9E-22 97.6 12.4 98 9-110 18-122 (126)
43 cd04021 C2_E3_ubiquitin_ligase 99.8 1E-17 2.2E-22 97.4 12.4 96 10-106 19-124 (125)
44 cd04039 C2_PSD C2 domain prese 99.8 2.7E-18 5.8E-23 97.5 9.7 72 12-83 25-99 (108)
45 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.9E-18 6.2E-23 99.7 10.0 83 10-93 34-125 (125)
46 cd08690 C2_Freud-1 C2 domain f 99.8 7.9E-18 1.7E-22 100.7 11.8 98 10-108 22-136 (155)
47 cd04018 C2C_Ferlin C2 domain t 99.8 5.1E-18 1.1E-22 101.3 10.8 84 10-93 32-124 (151)
48 PLN03008 Phospholipase D delta 99.8 3.9E-18 8.5E-23 121.8 11.9 99 10-110 74-178 (868)
49 cd08691 C2_NEDL1-like C2 domai 99.8 1.3E-17 2.8E-22 98.2 12.0 97 9-106 17-136 (137)
50 cd08680 C2_Kibra C2 domain fou 99.8 2.7E-18 5.9E-23 99.5 8.8 83 10-92 32-124 (124)
51 cd04011 C2B_Ferlin C2 domain s 99.8 7.2E-18 1.6E-22 96.1 9.8 84 10-93 18-109 (111)
52 cd04045 C2C_Tricalbin-like C2 99.8 1.6E-17 3.5E-22 95.9 11.3 87 9-97 18-106 (120)
53 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.3E-17 2.8E-22 96.8 9.9 83 10-93 34-123 (124)
54 cd04031 C2A_RIM1alpha C2 domai 99.8 1.4E-17 3E-22 96.6 9.5 82 10-93 34-125 (125)
55 cd04013 C2_SynGAP_like C2 doma 99.8 5.5E-17 1.2E-21 96.2 12.0 99 12-111 26-141 (146)
56 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.9E-17 6.4E-22 95.2 9.9 83 10-93 34-123 (124)
57 cd04040 C2D_Tricalbin-like C2 99.7 4.3E-17 9.3E-22 93.4 10.3 94 10-104 17-114 (115)
58 cd04049 C2_putative_Elicitor-r 99.7 1E-16 2.2E-21 93.0 11.6 85 9-94 18-108 (124)
59 cd04038 C2_ArfGAP C2 domain pr 99.7 3.2E-17 7E-22 97.4 9.5 72 11-82 20-92 (145)
60 cd08685 C2_RGS-like C2 domain 99.7 3.1E-17 6.8E-22 94.6 8.6 82 10-92 29-119 (119)
61 cd04030 C2C_KIAA1228 C2 domain 99.7 5.8E-17 1.3E-21 94.3 9.7 83 10-93 34-127 (127)
62 cd08675 C2B_RasGAP C2 domain s 99.7 5.5E-17 1.2E-21 95.7 9.5 84 9-93 15-119 (137)
63 cd08383 C2A_RasGAP C2 domain ( 99.7 1.3E-16 2.7E-21 91.6 10.8 95 11-108 16-117 (117)
64 cd04041 C2A_fungal C2 domain f 99.7 3.1E-17 6.7E-22 93.6 8.2 79 11-93 21-107 (111)
65 cd04048 C2A_Copine C2 domain f 99.7 3.4E-17 7.4E-22 94.5 8.4 84 9-93 17-113 (120)
66 PLN03200 cellulose synthase-in 99.7 2E-17 4.4E-22 126.6 8.8 100 9-110 1995-2101(2102)
67 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.5E-16 3.2E-21 92.4 10.5 83 10-93 34-124 (125)
68 cd08521 C2A_SLP C2 domain firs 99.7 1.1E-16 2.3E-21 92.7 9.8 82 10-92 33-123 (123)
69 KOG1028 Ca2+-dependent phospho 99.7 1.4E-16 3E-21 108.5 10.9 101 10-111 185-296 (421)
70 cd04032 C2_Perforin C2 domain 99.7 1.4E-16 2.9E-21 92.7 8.7 72 9-80 44-118 (127)
71 cd08390 C2A_Synaptotagmin-15-1 99.7 3.3E-16 7.2E-21 90.6 10.2 83 10-93 33-122 (123)
72 cd08388 C2A_Synaptotagmin-4-11 99.7 2.4E-16 5.2E-21 92.0 9.5 83 11-93 36-127 (128)
73 cd08389 C2A_Synaptotagmin-14_1 99.7 6.4E-16 1.4E-20 89.7 9.7 83 10-93 34-123 (124)
74 KOG0696 Serine/threonine prote 99.7 9.5E-18 2.1E-22 112.7 2.2 83 9-93 197-287 (683)
75 cd04037 C2E_Ferlin C2 domain f 99.7 3.5E-16 7.5E-21 90.8 8.3 73 9-81 17-93 (124)
76 cd04026 C2_PKC_alpha_gamma C2 99.7 4.8E-16 1E-20 90.9 8.8 83 10-94 31-121 (131)
77 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 7.6E-16 1.7E-20 93.1 9.7 83 10-93 45-137 (162)
78 cd00275 C2_PLC_like C2 domain 99.7 4.4E-15 9.6E-20 86.4 11.8 94 10-108 22-127 (128)
79 cd08676 C2A_Munc13-like C2 dom 99.7 1.1E-15 2.5E-20 91.4 9.3 78 9-92 45-153 (153)
80 cd04009 C2B_Munc13-like C2 dom 99.7 7.1E-16 1.5E-20 90.5 7.8 71 10-80 34-117 (133)
81 cd08686 C2_ABR C2 domain in th 99.6 1.9E-14 4.1E-19 82.2 12.2 70 10-80 12-94 (118)
82 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.6E-16 1.2E-20 90.9 6.0 81 10-93 31-120 (133)
83 cd08404 C2B_Synaptotagmin-4 C2 99.6 6.7E-16 1.4E-20 90.9 6.0 81 10-93 33-122 (136)
84 cd08402 C2B_Synaptotagmin-1 C2 99.6 4.6E-15 9.9E-20 87.3 8.7 81 10-93 33-122 (136)
85 cd08407 C2B_Synaptotagmin-13 C 99.6 4.6E-15 9.9E-20 87.5 8.5 80 11-93 36-124 (138)
86 cd04047 C2B_Copine C2 domain s 99.6 4.4E-15 9.6E-20 84.4 6.9 72 9-81 17-100 (110)
87 cd00276 C2B_Synaptotagmin C2 d 99.6 9.6E-16 2.1E-20 89.8 4.0 83 10-95 32-123 (134)
88 cd08406 C2B_Synaptotagmin-12 C 99.6 8.1E-15 1.8E-19 86.3 7.1 81 10-93 33-122 (136)
89 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.6E-15 5.5E-20 88.4 5.0 82 9-93 32-122 (136)
90 cd08410 C2B_Synaptotagmin-17 C 99.6 5.4E-15 1.2E-19 87.0 5.1 82 10-93 32-122 (135)
91 cd08408 C2B_Synaptotagmin-14_1 99.6 3.2E-14 6.9E-19 84.0 7.8 82 10-93 33-124 (138)
92 cd04035 C2A_Rabphilin_Doc2 C2 99.6 7.3E-14 1.6E-18 80.9 9.1 72 10-82 33-114 (123)
93 cd08409 C2B_Synaptotagmin-15 C 99.5 5.3E-14 1.2E-18 83.0 8.0 83 10-93 32-123 (137)
94 cd08692 C2B_Tac2-N C2 domain s 99.5 4E-14 8.8E-19 82.8 7.2 81 11-93 33-122 (135)
95 cd08403 C2B_Synaptotagmin-3-5- 99.5 7.7E-14 1.7E-18 81.9 8.1 81 10-93 32-121 (134)
96 cd00030 C2 C2 domain. The C2 d 99.5 7.7E-13 1.7E-17 72.8 9.3 83 10-92 17-102 (102)
97 KOG1011 Neurotransmitter relea 99.5 1E-13 2.3E-18 97.3 6.0 97 9-108 312-423 (1283)
98 KOG2059 Ras GTPase-activating 99.5 2.2E-13 4.8E-18 95.6 7.1 100 9-110 22-126 (800)
99 PLN02223 phosphoinositide phos 99.5 1.9E-12 4.1E-17 89.8 11.5 94 11-108 433-536 (537)
100 PLN02270 phospholipase D alpha 99.4 3.6E-12 7.8E-17 91.6 11.4 98 11-110 45-149 (808)
101 smart00239 C2 Protein kinase C 99.4 3.4E-12 7.4E-17 70.4 8.9 72 11-82 19-95 (101)
102 PLN02952 phosphoinositide phos 99.4 5.3E-12 1.2E-16 88.9 10.9 92 13-108 497-598 (599)
103 PF00168 C2: C2 domain; Inter 99.4 1.5E-12 3.4E-17 70.1 5.9 64 10-73 17-85 (85)
104 COG5038 Ca2+-dependent lipid-b 99.3 1.3E-11 2.8E-16 90.8 9.7 102 9-110 455-558 (1227)
105 cd08374 C2F_Ferlin C2 domain s 99.3 1.5E-11 3.3E-16 71.9 8.0 71 13-83 25-125 (133)
106 PLN02230 phosphoinositide phos 99.3 2E-11 4.4E-16 85.9 9.9 92 13-108 496-597 (598)
107 PLN02222 phosphoinositide phos 99.3 6.5E-11 1.4E-15 83.2 11.1 93 12-108 478-580 (581)
108 KOG0169 Phosphoinositide-speci 99.3 2.7E-11 5.7E-16 86.1 9.1 96 11-110 639-745 (746)
109 PLN02228 Phosphoinositide phos 99.2 1.6E-10 3.5E-15 81.1 10.6 94 13-110 458-562 (567)
110 COG5038 Ca2+-dependent lipid-b 99.2 8E-11 1.7E-15 86.8 7.9 77 8-84 1056-1135(1227)
111 KOG2059 Ras GTPase-activating 99.1 2.9E-10 6.2E-15 80.4 7.9 101 9-110 147-277 (800)
112 PLN02352 phospholipase D epsil 99.0 3.2E-09 7E-14 76.5 9.8 89 14-110 37-131 (758)
113 KOG1028 Ca2+-dependent phospho 99.0 2.1E-09 4.6E-14 73.7 7.4 69 10-78 316-393 (421)
114 KOG1264 Phospholipase C [Lipid 98.9 9.9E-09 2.2E-13 74.2 9.4 71 11-81 1083-1162(1267)
115 KOG1328 Synaptic vesicle prote 98.9 1.1E-09 2.5E-14 78.0 3.9 81 27-109 180-301 (1103)
116 KOG1031 Predicted Ca2+-depende 98.8 1.6E-08 3.5E-13 71.1 7.2 97 11-107 23-134 (1169)
117 cd08689 C2_fungal_Pkc1p C2 dom 98.8 2.6E-08 5.6E-13 55.7 6.3 68 9-80 19-87 (109)
118 KOG1328 Synaptic vesicle prote 98.8 2.6E-09 5.6E-14 76.3 2.5 72 9-80 964-1048(1103)
119 cd08683 C2_C2cd3 C2 domain fou 98.6 4.9E-07 1.1E-11 52.3 6.6 80 13-92 33-143 (143)
120 KOG1326 Membrane-associated pr 98.5 1.1E-07 2.4E-12 69.9 2.6 71 9-79 630-704 (1105)
121 KOG0905 Phosphoinositide 3-kin 98.3 5.9E-07 1.3E-11 67.4 3.7 81 12-93 1544-1634(1639)
122 PLN02964 phosphatidylserine de 98.2 2.6E-06 5.5E-11 61.3 4.9 69 13-81 68-139 (644)
123 PF15627 CEP76-C2: CEP76 C2 do 98.1 9.1E-05 2E-09 44.5 9.9 93 19-111 40-152 (156)
124 KOG1326 Membrane-associated pr 98.1 1.8E-06 4E-11 63.7 3.0 95 10-106 224-329 (1105)
125 cd08687 C2_PKN-like C2 domain 97.9 0.00037 8.1E-09 38.1 8.7 70 6-79 2-72 (98)
126 PF12416 DUF3668: Cep120 prote 97.7 0.00086 1.9E-08 45.3 9.8 96 14-109 19-132 (340)
127 cd08684 C2A_Tac2-N C2 domain f 97.7 8.6E-06 1.9E-10 44.2 0.0 54 25-80 36-93 (103)
128 KOG1327 Copine [Signal transdu 97.7 9.4E-05 2E-09 52.0 4.7 74 7-81 151-236 (529)
129 KOG1011 Neurotransmitter relea 97.5 0.00018 3.8E-09 52.1 4.7 83 10-93 1142-1236(1283)
130 KOG1013 Synaptic vesicle prote 97.4 0.00021 4.5E-09 47.6 3.2 66 10-75 251-325 (362)
131 PF10358 NT-C2: N-terminal C2 97.2 0.011 2.5E-07 34.8 9.4 77 34-110 50-136 (143)
132 KOG1013 Synaptic vesicle prote 97.2 4.7E-05 1E-09 50.5 -1.1 101 8-108 109-228 (362)
133 cd08397 C2_PI3K_class_III C2 d 97.1 0.0066 1.4E-07 36.8 7.7 69 11-79 28-107 (159)
134 KOG2060 Rab3 effector RIM1 and 97.1 0.00021 4.5E-09 48.2 0.9 82 12-93 290-378 (405)
135 KOG3837 Uncharacterized conser 97.0 0.0022 4.7E-08 44.2 5.5 93 14-107 389-501 (523)
136 KOG1265 Phospholipase C [Lipid 96.2 0.0087 1.9E-07 45.0 4.4 68 10-81 717-796 (1189)
137 PF11618 DUF3250: Protein of u 96.2 0.04 8.7E-07 31.2 6.3 92 16-108 2-104 (107)
138 cd08380 C2_PI3K_like C2 domain 96.1 0.14 3E-06 30.8 8.5 66 14-79 29-107 (156)
139 PF14429 DOCK-C2: C2 domain in 95.7 0.18 4E-06 31.1 8.1 53 26-78 61-120 (184)
140 PF15625 CC2D2AN-C2: CC2D2A N- 95.5 0.3 6.4E-06 29.9 8.3 66 14-80 38-107 (168)
141 cd08693 C2_PI3K_class_I_beta_d 95.1 0.43 9.3E-06 29.4 8.9 67 13-79 27-120 (173)
142 PTZ00447 apical membrane antig 94.8 0.82 1.8E-05 31.4 10.2 94 13-107 74-171 (508)
143 cd08694 C2_Dock-A C2 domains f 94.8 0.57 1.2E-05 29.5 9.1 53 25-77 54-114 (196)
144 cd08695 C2_Dock-B C2 domains f 94.6 0.29 6.2E-06 30.6 6.5 54 25-78 54-113 (189)
145 cd08398 C2_PI3K_class_I_alpha 94.0 0.8 1.7E-05 27.8 8.7 67 13-79 26-106 (158)
146 KOG1327 Copine [Signal transdu 93.8 0.12 2.7E-06 37.0 4.2 58 26-83 43-106 (529)
147 KOG1329 Phospholipase D1 [Lipi 93.8 0.16 3.5E-06 38.4 4.8 80 13-93 138-220 (887)
148 KOG1452 Predicted Rho GTPase-a 93.3 0.14 3E-06 34.5 3.5 66 13-79 74-141 (442)
149 PF00792 PI3K_C2: Phosphoinosi 93.3 0.31 6.7E-06 28.8 4.8 46 34-79 32-85 (142)
150 cd08679 C2_DOCK180_related C2 92.7 0.86 1.9E-05 28.1 6.2 51 28-78 56-115 (178)
151 cd08696 C2_Dock-C C2 domains f 91.5 1.9 4.1E-05 26.8 6.7 53 26-78 56-118 (179)
152 cd08697 C2_Dock-D C2 domains f 91.1 2.5 5.4E-05 26.4 7.4 53 26-78 58-123 (185)
153 cd08399 C2_PI3K_class_I_gamma 90.5 2.8 6.2E-05 26.0 7.4 34 27-60 49-87 (178)
154 cd04012 C2A_PI3K_class_II C2 d 89.2 0.76 1.7E-05 28.1 3.6 67 13-79 29-119 (171)
155 smart00142 PI3K_C2 Phosphoinos 88.2 3 6.5E-05 23.1 5.5 48 14-61 33-91 (100)
156 cd05137 RasGAP_CLA2_BUD2 CLA2/ 86.6 1.3 2.9E-05 30.9 3.9 41 68-109 1-44 (395)
157 KOG0694 Serine/threonine prote 84.0 0.26 5.6E-06 36.4 -0.5 67 13-80 28-96 (694)
158 PF14924 DUF4497: Protein of u 82.2 7.1 0.00015 22.1 6.0 57 52-108 30-103 (112)
159 KOG3543 Ca2+-dependent activat 81.0 12 0.00025 28.3 6.7 76 15-93 362-440 (1218)
160 PF09826 Beta_propel: Beta pro 78.5 21 0.00045 26.1 7.4 73 1-74 334-423 (521)
161 PF07162 B9-C2: Ciliary basal 77.1 14 0.00031 22.5 7.9 67 10-76 14-101 (168)
162 PF06219 DUF1005: Protein of u 73.3 31 0.00067 24.7 9.3 98 13-110 36-168 (460)
163 PF14909 SPATA6: Spermatogenes 72.8 18 0.00038 21.7 8.0 72 9-81 16-101 (140)
164 KOG4027 Uncharacterized conser 72.2 20 0.00043 22.0 8.1 69 9-77 22-109 (187)
165 KOG4028 Uncharacterized conser 64.8 23 0.0005 21.0 4.2 25 50-74 73-97 (175)
166 KOG0906 Phosphatidylinositol 3 59.4 12 0.00025 28.3 2.8 43 36-78 77-123 (843)
167 PF13049 DUF3910: Protein of u 57.8 10 0.00022 20.2 1.8 18 1-18 1-18 (93)
168 PF01060 DUF290: Transthyretin 56.7 25 0.00055 18.5 3.3 26 50-75 11-36 (80)
169 KOG2419 Phosphatidylserine dec 47.2 4 8.8E-05 30.6 -0.9 37 11-48 303-340 (975)
170 PF10409 PTEN_C2: C2 domain of 32.3 1E+02 0.0022 17.7 6.3 70 10-79 22-97 (134)
171 KOG0904 Phosphatidylinositol 3 31.9 1.4E+02 0.003 24.0 4.7 34 27-60 383-421 (1076)
172 PF08872 KGK: KGK domain; Int 22.5 98 0.0021 17.8 2.2 14 98-111 80-95 (114)
173 KOG1032 Uncharacterized conser 20.3 2.2E+02 0.0047 21.6 4.0 50 10-59 115-166 (590)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.94 E-value=2.8e-25 Score=128.15 Aligned_cols=98 Identities=19% Similarity=0.423 Sum_probs=84.7
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC--CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcc-cccCCCCC
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG--SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEP-LFMEGSLP 86 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~--~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~-l~~~~~~~ 86 (111)
.|++||||++.++++.++|+++.+ .||.|||+|.|.+......|.|+|||++.++++++||.+.+++.+ +. .+...
T Consensus 19 ~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~-~g~~~ 97 (121)
T cd04016 19 LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVF-NGETL 97 (121)
T ss_pred CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhcc-CCCCc
Confidence 588999999999999999999864 899999999999987667899999999999999999999999974 54 44446
Q ss_pred CeEEEec--cCCeEeeEEEEEEEE
Q 037768 87 PTAYNVV--KNQEYCGEIRVGLTF 108 (111)
Q Consensus 87 ~~~~~l~--~~~~~~G~l~l~~~~ 108 (111)
..|++|. ......|.|+|+++|
T Consensus 98 ~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 98 DDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cccEeCcCccCCCCceEEEEEEeC
Confidence 8999998 334567999999987
No 2
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=2.1e-22 Score=117.38 Aligned_cols=101 Identities=23% Similarity=0.344 Sum_probs=86.3
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCC----CceEEEEEEeCCCCC-CCceeEEEEEECcccccCC
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGD----VTELTLKIMDKDTFS-NDDYLGEATISLEPLFMEG 83 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~----~~~l~i~v~~~~~~~-~~~~lG~~~~~l~~l~~~~ 83 (111)
.+.+||||++.+++..++|+++++ .||.|||.|.|.+..+ ...|.|+||+++..+ ++++||++.++++++...+
T Consensus 18 ~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~ 97 (127)
T cd04022 18 QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPS 97 (127)
T ss_pred CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCC
Confidence 567899999999999999999999 9999999999998753 247999999998876 7999999999999997545
Q ss_pred CCCCeEEEecc---CCeEeeEEEEEEEEEe
Q 037768 84 SLPPTAYNVVK---NQEYCGEIRVGLTFTP 110 (111)
Q Consensus 84 ~~~~~~~~l~~---~~~~~G~l~l~~~~~~ 110 (111)
.....||+|.+ .++.+|+|.|+++++.
T Consensus 98 ~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 98 EAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 55689999983 2457899999998863
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.90 E-value=1.1e-22 Score=118.42 Aligned_cols=99 Identities=25% Similarity=0.511 Sum_probs=83.5
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC------CCceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG------DVTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~------~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
..|.+||||++.+++..++|+++++ .||.|||+|.|.+.. ....|.++|||++.++++++||++.++++++..
T Consensus 16 ~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~ 95 (126)
T cd08682 16 KSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDE 95 (126)
T ss_pred CCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhc
Confidence 3577999999999999999999999 999999999999876 345899999999988889999999999999863
Q ss_pred -CCCCCCeEEEec-c---CCeEeeEEEEEEE
Q 037768 82 -EGSLPPTAYNVV-K---NQEYCGEIRVGLT 107 (111)
Q Consensus 82 -~~~~~~~~~~l~-~---~~~~~G~l~l~~~ 107 (111)
.+.....|++|. . ..+..|+|+++++
T Consensus 96 ~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 96 DKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 233457999997 2 2346799999873
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.90 E-value=3.3e-22 Score=115.68 Aligned_cols=101 Identities=28% Similarity=0.420 Sum_probs=86.8
Q ss_pred ecCCCCcEEEEEECC-eEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 9 LAGSVDPYVVLTCRT-QEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~-~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
..|.+||||++.+++ ..++|+++.+ .+|.|+|.|.|.+......+.|+|||++..+++++||++.++++++..+.. .
T Consensus 17 ~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~-~ 95 (121)
T cd04042 17 RGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKP-T 95 (121)
T ss_pred CCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCC-e
Confidence 357899999999976 5679999999 999999999999876667899999999998889999999999999985443 5
Q ss_pred CeEEEecc--CCeEeeEEEEEEEEEe
Q 037768 87 PTAYNVVK--NQEYCGEIRVGLTFTP 110 (111)
Q Consensus 87 ~~~~~l~~--~~~~~G~l~l~~~~~~ 110 (111)
..|++|.. +.+..|+|++.++|.|
T Consensus 96 ~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 96 EVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEECCCCCCccCceEEEEEEEECC
Confidence 78999972 2357899999999986
No 5
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.89 E-value=1.5e-21 Score=113.67 Aligned_cols=101 Identities=29% Similarity=0.493 Sum_probs=86.5
Q ss_pred ecCCCCcEEEEEECC--eEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCC
Q 037768 9 LAGSVDPYVVLTCRT--QEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSL 85 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~--~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~ 85 (111)
..|.+||||++.++. ..++|+++++ .+|.|+|.|.|.+......|.|+|||++..+++++||++.+++.++.....
T Consensus 14 ~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~- 92 (126)
T cd08678 14 AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPS- 92 (126)
T ss_pred CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCc-
Confidence 357899999999963 5579999999 999999999999976566899999999998889999999999999985544
Q ss_pred CCeEEEecc----CCeEeeEEEEEEEEEe
Q 037768 86 PPTAYNVVK----NQEYCGEIRVGLTFTP 110 (111)
Q Consensus 86 ~~~~~~l~~----~~~~~G~l~l~~~~~~ 110 (111)
...|++|.. +....|+|.+++.|.+
T Consensus 93 ~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 93 GRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred eeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 468999983 2456899999999975
No 6
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.89 E-value=6.3e-22 Score=113.96 Aligned_cols=98 Identities=32% Similarity=0.549 Sum_probs=84.3
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeC-C-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccCCCC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGS-G-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSL 85 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~-~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~ 85 (111)
..+.+||||++.+++..++|+++. + .||.|+|.|.|.+..+ ...|.|+|||++..+ +++||++.++++++..+. .
T Consensus 18 ~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~-~ 95 (118)
T cd08681 18 KLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEG-E 95 (118)
T ss_pred cCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcC-C
Confidence 356799999999988888888764 5 8999999999999864 458999999998876 999999999999987543 3
Q ss_pred CCeEEEeccCCeEeeEEEEEEEE
Q 037768 86 PPTAYNVVKNQEYCGEIRVGLTF 108 (111)
Q Consensus 86 ~~~~~~l~~~~~~~G~l~l~~~~ 108 (111)
...|++|...++..|+|+|+++|
T Consensus 96 ~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 96 FDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred CCCcEEeccCCcEeeEEEEEEEC
Confidence 58999999777889999999986
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.89 E-value=6.4e-22 Score=114.86 Aligned_cols=96 Identities=23% Similarity=0.370 Sum_probs=81.5
Q ss_pred EecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCC------CCceeEEEEEECcccc
Q 037768 8 ILAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFS------NDDYLGEATISLEPLF 80 (111)
Q Consensus 8 ~~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~------~~~~lG~~~~~l~~l~ 80 (111)
...|.+||||++.++++..+|+++++ .||.|||+|.|.+......|.|+|||++..+ ++++||++.++++.+.
T Consensus 19 d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~ 98 (126)
T cd08379 19 DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLE 98 (126)
T ss_pred ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHcc
Confidence 34688999999999999999999999 9999999999999876678999999998763 7999999999999987
Q ss_pred cCCCCCCeEEEec----cCCeEeeEEEE
Q 037768 81 MEGSLPPTAYNVV----KNQEYCGEIRV 104 (111)
Q Consensus 81 ~~~~~~~~~~~l~----~~~~~~G~l~l 104 (111)
.+. ....||+|. ...+..|+|++
T Consensus 99 ~~~-~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 99 DDR-VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCC-EEeeEEEeEeCCCCCccCCcEEEe
Confidence 544 457999998 23445677765
No 8
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.88 E-value=9.1e-22 Score=112.29 Aligned_cols=104 Identities=22% Similarity=0.338 Sum_probs=88.2
Q ss_pred EEEEecCCCCcEEEEEECCe-EEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 5 VFFILAGSVDPYVVLTCRTQ-EQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 5 ~~~~~~~~~dp~v~v~~~~~-~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
......|.+||||.+.++++ ..+|+++++ .+|.|||.|.|.+... ...|.|+||+++.. ++++||.+.++|+++..
T Consensus 5 ~~~~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 5 TSESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLID 83 (111)
T ss_pred cccccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHh
Confidence 34557889999999999775 468999888 9999999999998764 45799999999988 79999999999999865
Q ss_pred CCCCCCeEEEeccCCeEeeEEEEEEEEEeC
Q 037768 82 EGSLPPTAYNVVKNQEYCGEIRVGLTFTPE 111 (111)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~G~l~l~~~~~~~ 111 (111)
.......|++|.. ...|.|++++.|.|.
T Consensus 84 ~~~~~~~w~~L~~--~~~G~i~~~~~~~p~ 111 (111)
T cd04052 84 ATSVGQQWFPLSG--NGQGRIRISALWKPV 111 (111)
T ss_pred hhhccceeEECCC--CCCCEEEEEEEEecC
Confidence 5455679999974 457999999999984
No 9
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.88 E-value=8.6e-22 Score=114.18 Aligned_cols=101 Identities=27% Similarity=0.476 Sum_probs=86.4
Q ss_pred cCCCCcEEEEEECC--eEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 10 AGSVDPYVVLTCRT--QEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 10 ~~~~dp~v~v~~~~--~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
.+.+||||++.++. ..++|+++.+ .+|.|+|.|.|.+......|.|++||++..+++++||++.+++.++..+....
T Consensus 21 ~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~ 100 (124)
T cd04044 21 GGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQE 100 (124)
T ss_pred CCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCcccc
Confidence 35689999999976 6789999999 99999999999988656799999999998888999999999999998655543
Q ss_pred CeEEEeccCCeEeeEEEEEEEEEe
Q 037768 87 PTAYNVVKNQEYCGEIRVGLTFTP 110 (111)
Q Consensus 87 ~~~~~l~~~~~~~G~l~l~~~~~~ 110 (111)
..|+.+..+++..|+|+++++|.|
T Consensus 101 ~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 101 NLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CcchhhhcCCccceEEEEEEEeCC
Confidence 345556667778899999999987
No 10
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.88 E-value=2.4e-21 Score=112.05 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=83.3
Q ss_pred cCCCCcEEEEEECCe-EEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 10 AGSVDPYVVLTCRTQ-EQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~-~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
.|.+||||.+.+++. ..+|+++++ .+|.|+|+|.|.+......+.+.+||++..+++++||++.++++++...+ ...
T Consensus 19 ~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~ 97 (121)
T cd08401 19 NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYY-GKD 97 (121)
T ss_pred CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCC-CcE
Confidence 357899999999765 479999999 99999999999998666799999999999989999999999999987543 357
Q ss_pred eEEEecc---CCeEeeEEEEEEEE
Q 037768 88 TAYNVVK---NQEYCGEIRVGLTF 108 (111)
Q Consensus 88 ~~~~l~~---~~~~~G~l~l~~~~ 108 (111)
.|++|.. ..+..|+|+|++.+
T Consensus 98 ~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 98 TWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred eeEEEEccCCCCcccEEEEEEEEC
Confidence 9999983 34468999998764
No 11
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.88 E-value=4.4e-21 Score=111.82 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=87.6
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccccCCC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~ 84 (111)
..|.+||||++.++...++|+++++ .+|.|+|+|.|.+... ...+.++||+++..+++++||++.++++++..++
T Consensus 11 ~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~- 89 (127)
T cd08373 11 LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEG- 89 (127)
T ss_pred cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCC-
Confidence 5788999999999988899999999 9999999999998753 4589999999998888999999999999998543
Q ss_pred CCCeEEEec-c-CCeEeeEEEEEEEEEeC
Q 037768 85 LPPTAYNVV-K-NQEYCGEIRVGLTFTPE 111 (111)
Q Consensus 85 ~~~~~~~l~-~-~~~~~G~l~l~~~~~~~ 111 (111)
....|++|. . .....|+|++.++|.|.
T Consensus 90 ~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 90 LLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred ceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 357899997 2 33347999999999874
No 12
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=2.3e-21 Score=112.17 Aligned_cols=96 Identities=28% Similarity=0.452 Sum_probs=82.3
Q ss_pred CCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC-CCceEEEEEEeCCCCCCCceeEEEEEECcccccCC----CC
Q 037768 12 SVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG-DVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEG----SL 85 (111)
Q Consensus 12 ~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~-~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~----~~ 85 (111)
.+||||++.+++...+|+++++ .||.|||+|.|.+.. ....|.++|||++.. ++++||++.++++++.... ..
T Consensus 16 ~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~ 94 (121)
T cd08378 16 SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPL 94 (121)
T ss_pred cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCC
Confidence 6899999999988889999999 999999999999876 456899999999876 6999999999999986432 23
Q ss_pred CCeEEEec--cCCeEeeEEEEEEEE
Q 037768 86 PPTAYNVV--KNQEYCGEIRVGLTF 108 (111)
Q Consensus 86 ~~~~~~l~--~~~~~~G~l~l~~~~ 108 (111)
...||+|. .+.+..|+|+|+++|
T Consensus 95 ~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 95 APQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred CcceEEccCCCCCccceEEEEEEEe
Confidence 56999998 334678999999987
No 13
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.87 E-value=4.1e-21 Score=112.67 Aligned_cols=101 Identities=23% Similarity=0.476 Sum_probs=85.2
Q ss_pred ecCCCCcEEEEEECCe-------EEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 9 LAGSVDPYVVLTCRTQ-------EQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-------~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
..|.+||||++.+.+. .++|+++++ .+|.|+++|.|.+......|.++|||++..+++++||++.++++++.
T Consensus 17 ~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~ 96 (133)
T cd04033 17 IFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLP 96 (133)
T ss_pred CCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCC
Confidence 3578999999998543 468999999 99999999999988766789999999999888999999999999987
Q ss_pred cCCC-----CCCeEEEecc---CCeEeeEEEEEEEEE
Q 037768 81 MEGS-----LPPTAYNVVK---NQEYCGEIRVGLTFT 109 (111)
Q Consensus 81 ~~~~-----~~~~~~~l~~---~~~~~G~l~l~~~~~ 109 (111)
.+.. ....||+|.+ .++..|+|+++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 97 TETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 5432 3568999982 356789999999984
No 14
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.87 E-value=6.4e-21 Score=109.48 Aligned_cols=96 Identities=29% Similarity=0.447 Sum_probs=84.1
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
.+.+||||++.+++..++|+++++ .+|.|+|+|.|.+... ...|.++|||++..+++++||++.++++++..+. ...
T Consensus 18 ~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~-~~~ 96 (116)
T cd08376 18 NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQ-THS 96 (116)
T ss_pred CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCC-ceE
Confidence 567899999999988899999999 9999999999998765 5689999999999888999999999999987543 468
Q ss_pred eEEEeccCCeEeeEEEEEEEEE
Q 037768 88 TAYNVVKNQEYCGEIRVGLTFT 109 (111)
Q Consensus 88 ~~~~l~~~~~~~G~l~l~~~~~ 109 (111)
.|++|.+. .|+|++.++|+
T Consensus 97 ~w~~L~~~---~G~~~~~~~~~ 115 (116)
T cd08376 97 LELELEDG---EGSLLLLLTLT 115 (116)
T ss_pred EEEEccCC---CcEEEEEEEec
Confidence 99999754 49999998875
No 15
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.87 E-value=6.9e-21 Score=110.96 Aligned_cols=99 Identities=30% Similarity=0.496 Sum_probs=84.8
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC-CCceEEEEEEeCCCCCCCceeEEEEEECcccccC--CCC
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG-DVTELTLKIMDKDTFSNDDYLGEATISLEPLFME--GSL 85 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~-~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~--~~~ 85 (111)
.+.+||||.+.++...++|+++++ .+|.|++.|.|.+.. ....|.|+|||++..+++++||++.++++++..+ ...
T Consensus 21 ~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~ 100 (128)
T cd04024 21 KGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQ 100 (128)
T ss_pred CCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCc
Confidence 578899999999988899999999 999999999999986 4568999999999888899999999999998742 233
Q ss_pred CCeEEEeccC-----CeEeeEEEEEEEE
Q 037768 86 PPTAYNVVKN-----QEYCGEIRVGLTF 108 (111)
Q Consensus 86 ~~~~~~l~~~-----~~~~G~l~l~~~~ 108 (111)
...|++|... ....|+|+|+++|
T Consensus 101 ~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 101 SDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceeEEccCcccCccccccceEEEEEEC
Confidence 5799999722 3368999999986
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=1.2e-20 Score=112.72 Aligned_cols=102 Identities=19% Similarity=0.332 Sum_probs=84.7
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC--CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccC---
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG--SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFME--- 82 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~--~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~--- 82 (111)
..|.+||||++.+++...+|++..+ .+|.|||.|.|.+..+ ...+.|++|+++..+++++||++.++++++..+
T Consensus 17 ~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~ 96 (150)
T cd04019 17 KNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDD 96 (150)
T ss_pred CCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCC
Confidence 3578999999999998889998854 9999999999998764 358999999998877899999999999998643
Q ss_pred CCCCCeEEEeccC---------CeEeeEEEEEEEEEe
Q 037768 83 GSLPPTAYNVVKN---------QEYCGEIRVGLTFTP 110 (111)
Q Consensus 83 ~~~~~~~~~l~~~---------~~~~G~l~l~~~~~~ 110 (111)
+....+|++|... .+.+|+|+|.++|.+
T Consensus 97 ~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 97 RPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 2345899999832 245799999999865
No 17
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.86 E-value=2.8e-20 Score=108.31 Aligned_cols=99 Identities=21% Similarity=0.372 Sum_probs=82.2
Q ss_pred CCCCcEEEEEECCeE-EEeeeeCC-CCCcccceEEEEEcCCC-ceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 11 GSVDPYVVLTCRTQE-QKSSIGSG-SGPEWNETFVFTITGDV-TELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~-~~T~~~~~-~~P~w~e~~~f~~~~~~-~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
+.+||||.+.+++.. .+|++ ++ .+|.|||+|.|.+..+. ..+.|.+||++..+++++||++.++++.+..++. ..
T Consensus 20 ~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~-~~ 97 (126)
T cd08400 20 HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQE-TD 97 (126)
T ss_pred CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCc-cc
Confidence 468999999997754 57876 46 99999999999865543 4789999999999999999999999999875443 57
Q ss_pred eEEEecc----CCeEeeEEEEEEEEEeC
Q 037768 88 TAYNVVK----NQEYCGEIRVGLTFTPE 111 (111)
Q Consensus 88 ~~~~l~~----~~~~~G~l~l~~~~~~~ 111 (111)
.|++|.+ .....|+|+|+++|.++
T Consensus 98 ~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 98 EWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred EeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999983 24567999999999875
No 18
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.86 E-value=2.6e-20 Score=107.30 Aligned_cols=98 Identities=22% Similarity=0.380 Sum_probs=84.1
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
..+.+||||++.+.+...+|+++++ .+|.|+++|.|.+......+.|++||++..+++++||++.+++.++..+ ..
T Consensus 18 ~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~---~~ 94 (119)
T cd08377 18 IGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG---ER 94 (119)
T ss_pred CCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC---Cc
Confidence 3567899999999888889999999 9999999999998765678999999999888899999999999998633 36
Q ss_pred eEEEecc---CCeEeeEEEEEEEEE
Q 037768 88 TAYNVVK---NQEYCGEIRVGLTFT 109 (111)
Q Consensus 88 ~~~~l~~---~~~~~G~l~l~~~~~ 109 (111)
.|++|.. ..+.+|+|.++++++
T Consensus 95 ~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 95 KWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred eEEECcccCCCCceeeEEEEEEEeC
Confidence 8999972 345799999999863
No 19
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.86 E-value=2.2e-20 Score=110.00 Aligned_cols=100 Identities=29% Similarity=0.517 Sum_probs=81.5
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCC-ceEEEEEEeCCCCCCCceeEEEEEECcccccCC--C
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDV-TELTLKIMDKDTFSNDDYLGEATISLEPLFMEG--S 84 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~-~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~--~ 84 (111)
..|.+||||++.++...++|+++++ .||.||++|.|.+.... ..+.|+|||++..+++++||++.+++.++.... .
T Consensus 32 ~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~ 111 (136)
T cd08375 32 SNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKES 111 (136)
T ss_pred CCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccC
Confidence 3678999999999999999999999 99999999999997643 589999999998888999999999999997522 2
Q ss_pred CCCeEEEeccCCeEeeEEEEEEEE
Q 037768 85 LPPTAYNVVKNQEYCGEIRVGLTF 108 (111)
Q Consensus 85 ~~~~~~~l~~~~~~~G~l~l~~~~ 108 (111)
....+..+...+...|+|+|++++
T Consensus 112 ~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 112 KGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCcEEEEeccccccceeEEEEEEe
Confidence 222223333446667999999987
No 20
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.86 E-value=4e-21 Score=114.14 Aligned_cols=73 Identities=48% Similarity=0.783 Sum_probs=69.3
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
.+++||||++.+++++.+|+++++ +||.|||.|.|.+..+...+.++|||++.++.+|+||.+.+++..+...
T Consensus 24 ~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 24 LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence 488999999999999999999999 9999999999999999999999999999999999999999999988643
No 21
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.86 E-value=2.6e-20 Score=107.74 Aligned_cols=99 Identities=22% Similarity=0.425 Sum_probs=83.3
Q ss_pred ecCCCCcEEEEEECCeE-EEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQE-QKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~-~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
..|.+||||++.+++.. .+|+++++ .+|.|+|.|.|.+......|.+++|+++..+++++||++.++++++...+...
T Consensus 17 ~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~ 96 (121)
T cd04054 17 ITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGI 96 (121)
T ss_pred CCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCC
Confidence 46789999999997654 69999999 99999999999987666799999999999989999999999998887544446
Q ss_pred CeEEEecc---CCeEeeEEEEEEE
Q 037768 87 PTAYNVVK---NQEYCGEIRVGLT 107 (111)
Q Consensus 87 ~~~~~l~~---~~~~~G~l~l~~~ 107 (111)
..|++|.+ .....|+|.+.++
T Consensus 97 ~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 97 DGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CcEEECeeeCCCCccccEEEEEEE
Confidence 79999972 3446799988875
No 22
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.86 E-value=3.3e-20 Score=109.20 Aligned_cols=102 Identities=20% Similarity=0.400 Sum_probs=84.0
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC----------CCceEEEEEEeCCCCCCCceeEEEEE-EC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG----------DVTELTLKIMDKDTFSNDDYLGEATI-SL 76 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~----------~~~~l~i~v~~~~~~~~~~~lG~~~~-~l 76 (111)
..|.+||||++.+++..++|+++++ .||.|+|.|.|.... ....+.++|||++..+++++||++.+ ++
T Consensus 18 ~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~ 97 (135)
T cd04017 18 KSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPL 97 (135)
T ss_pred CCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeee
Confidence 3677999999999988999999999 999999999997432 12468999999999888999999986 44
Q ss_pred cccccC--CCCCCeEEEeccCCeEeeEEEEEEEEEe
Q 037768 77 EPLFME--GSLPPTAYNVVKNQEYCGEIRVGLTFTP 110 (111)
Q Consensus 77 ~~l~~~--~~~~~~~~~l~~~~~~~G~l~l~~~~~~ 110 (111)
..+... .....+|++|...+...|+|.+++++++
T Consensus 98 ~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 98 VKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE 133 (135)
T ss_pred eecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence 444321 2346799999977778999999999986
No 23
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.85 E-value=4.4e-20 Score=107.03 Aligned_cols=96 Identities=24% Similarity=0.456 Sum_probs=82.3
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
.+.+||||++++++..++|+++++ .+|.|+|+|.|.+... ...|.|+|||++..+++++||++.++++++..... ..
T Consensus 18 ~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~-~~ 96 (123)
T cd04025 18 NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQ-EE 96 (123)
T ss_pred CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCC-CC
Confidence 567899999999888899999999 9999999999998875 45899999999988889999999999999875433 57
Q ss_pred eEEEecc-------CCeEeeEEEEEE
Q 037768 88 TAYNVVK-------NQEYCGEIRVGL 106 (111)
Q Consensus 88 ~~~~l~~-------~~~~~G~l~l~~ 106 (111)
.|+.|.+ .++..|.|++.+
T Consensus 97 ~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 97 GWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CEEECCCCCCCCccccCceEEEEEEe
Confidence 8999872 455679998876
No 24
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.85 E-value=5.1e-20 Score=110.88 Aligned_cols=99 Identities=21% Similarity=0.345 Sum_probs=83.0
Q ss_pred ecCCCCcEEEEEECCeE-EEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQE-QKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~-~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
..|.+||||++.+++.. .+|+++++ .||.|||+|.|.+......|.|.|||++..+ +++||++.++++++..+ ...
T Consensus 54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g-~~~ 131 (158)
T cd04015 54 GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSG-EPV 131 (158)
T ss_pred CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCC-CCc
Confidence 46778999999998755 59999999 9999999999998766678999999998876 68999999999999854 446
Q ss_pred CeEEEecc----CCeEeeEEEEEEEEE
Q 037768 87 PTAYNVVK----NQEYCGEIRVGLTFT 109 (111)
Q Consensus 87 ~~~~~l~~----~~~~~G~l~l~~~~~ 109 (111)
..|++|.. .....|.|+++++|.
T Consensus 132 ~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 132 EGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 89999972 223468999999884
No 25
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.85 E-value=4.2e-20 Score=106.67 Aligned_cols=94 Identities=27% Similarity=0.479 Sum_probs=81.5
Q ss_pred CCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC-CCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCCe
Q 037768 11 GSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG-DVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPPT 88 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~-~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~~ 88 (111)
|.+||||++.+++..++|+++++ .+|.|+|+|.|.+.. ....|.+++||++.. ++++||++.++++++..++ ....
T Consensus 26 g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~-~~~~ 103 (121)
T cd08391 26 GKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKG-FIDE 103 (121)
T ss_pred CCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccC-ccce
Confidence 57899999999988899999999 999999999999875 456899999999887 7999999999999997544 4689
Q ss_pred EEEeccCCeEeeEEEEEEEE
Q 037768 89 AYNVVKNQEYCGEIRVGLTF 108 (111)
Q Consensus 89 ~~~l~~~~~~~G~l~l~~~~ 108 (111)
|++|... ..|+|++.++|
T Consensus 104 w~~L~~~--~~G~~~~~~~~ 121 (121)
T cd08391 104 WLPLEDV--KSGRLHLKLEW 121 (121)
T ss_pred EEECcCC--CCceEEEEEeC
Confidence 9999743 56999988875
No 26
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.84 E-value=1.9e-19 Score=104.43 Aligned_cols=97 Identities=25% Similarity=0.430 Sum_probs=80.8
Q ss_pred ecCCCCcEEEEEEC-CeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCC--CceeEEEEEECcccccCCC
Q 037768 9 LAGSVDPYVVLTCR-TQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSN--DDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 9 ~~~~~dp~v~v~~~-~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~--~~~lG~~~~~l~~l~~~~~ 84 (111)
..+.+||||++.+. ...++|+++++ .+|.|+|+|.|.+.. ...|.++|||++..++ +++||++.+++.++.....
T Consensus 17 ~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~ 95 (123)
T cd08382 17 LFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKD 95 (123)
T ss_pred CCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCC
Confidence 35778999999995 66789999999 999999999999975 6699999999988765 5799999999999975555
Q ss_pred CCCeEEEec--c---CCeEeeEEEEEE
Q 037768 85 LPPTAYNVV--K---NQEYCGEIRVGL 106 (111)
Q Consensus 85 ~~~~~~~l~--~---~~~~~G~l~l~~ 106 (111)
....|++|. . .+...|+|.+.+
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 96 TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CccceeEeecCCCCCCceEeeEEEEEe
Confidence 557899996 1 355678888876
No 27
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.83 E-value=3.5e-19 Score=103.70 Aligned_cols=98 Identities=23% Similarity=0.447 Sum_probs=83.5
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
..|.+||||++.++++.++|+++++ .+|.|+|.|.|.+......|.|+|||++..+ +++||.+.+++.++. ....
T Consensus 20 ~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~---~~~~ 95 (126)
T cd04046 20 SGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEFLGQATLSADPND---SQTL 95 (126)
T ss_pred CCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCceEEEEEecccCC---CcCc
Confidence 3578999999999999999999999 9999999999998877779999999998765 899999999998754 2345
Q ss_pred eEEEec-----cCCeEeeEEEEEEEEEe
Q 037768 88 TAYNVV-----KNQEYCGEIRVGLTFTP 110 (111)
Q Consensus 88 ~~~~l~-----~~~~~~G~l~l~~~~~~ 110 (111)
.|++|. .++...|+|.+.+.+.+
T Consensus 96 ~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 96 RTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred eEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 778885 45667899999998765
No 28
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=1.3e-19 Score=104.50 Aligned_cols=96 Identities=26% Similarity=0.374 Sum_probs=79.5
Q ss_pred cCCCCcEEEEEECC---eEEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccCCC
Q 037768 10 AGSVDPYVVLTCRT---QEQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 10 ~~~~dp~v~v~~~~---~~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~ 84 (111)
.+.+||||++.+++ ..++|+++++ .||.|||+|.|.+... ...|.|+|||++.. ++++||++.++++++..+ .
T Consensus 18 ~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g-~ 95 (119)
T cd04036 18 LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLG-E 95 (119)
T ss_pred CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCC-C
Confidence 57899999999853 4579999999 9999999999998764 34799999999988 799999999999998754 3
Q ss_pred CCCeEEEeccCCeEeeEEEEEEEEE
Q 037768 85 LPPTAYNVVKNQEYCGEIRVGLTFT 109 (111)
Q Consensus 85 ~~~~~~~l~~~~~~~G~l~l~~~~~ 109 (111)
....|++|.+. ..|+|.+++.+.
T Consensus 96 ~~~~~~~L~~~--~~g~l~~~~~~~ 118 (119)
T cd04036 96 KVRVTFSLNPQ--GKEELEVEFLLE 118 (119)
T ss_pred cEEEEEECCCC--CCceEEEEEEee
Confidence 45789999754 368888887653
No 29
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.83 E-value=5.1e-19 Score=103.72 Aligned_cols=95 Identities=23% Similarity=0.406 Sum_probs=81.4
Q ss_pred CCCCcEEEEEECCeE-EEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccC-CCCCC
Q 037768 11 GSVDPYVVLTCRTQE-QKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFME-GSLPP 87 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~-~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~-~~~~~ 87 (111)
+.+||||++.++++. .+|++.++ .+|.|||+|.|.+. ....+.|.||+++..++++++|++.++++++..+ +....
T Consensus 33 g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~ 111 (132)
T cd04014 33 QLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFD 111 (132)
T ss_pred cCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCccc
Confidence 568999999998765 58899888 99999999999997 4568999999998888899999999999999863 34468
Q ss_pred eEEEeccCCeEeeEEEEEEEEEe
Q 037768 88 TAYNVVKNQEYCGEIRVGLTFTP 110 (111)
Q Consensus 88 ~~~~l~~~~~~~G~l~l~~~~~~ 110 (111)
.|++|. ++|.|+++++|..
T Consensus 112 ~w~~L~----~~G~l~l~~~~~~ 130 (132)
T cd04014 112 LWVDLE----PQGKLHVKIELKG 130 (132)
T ss_pred EEEEcc----CCcEEEEEEEEec
Confidence 999997 4689999998864
No 30
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.83 E-value=1.2e-19 Score=108.04 Aligned_cols=84 Identities=24% Similarity=0.434 Sum_probs=70.5
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEc------------C----CCceEEEEEEeCCCCCCCc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTIT------------G----DVTELTLKIMDKDTFSNDD 67 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~------------~----~~~~l~i~v~~~~~~~~~~ 67 (111)
.|.+||||++.+.. ..++|+++++ .+|.|||+|.|.+. + ....|.+.||+++..++++
T Consensus 16 ~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~dd 95 (148)
T cd04010 16 NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDV 95 (148)
T ss_pred CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCc
Confidence 57799999999955 4578999999 99999999999985 1 1237899999999888899
Q ss_pred eeEEEEEECcccccCCCCCCeEEEec
Q 037768 68 YLGEATISLEPLFMEGSLPPTAYNVV 93 (111)
Q Consensus 68 ~lG~~~~~l~~l~~~~~~~~~~~~l~ 93 (111)
+||++.+++.++..+......||+|.
T Consensus 96 fLG~v~i~l~~l~~~~~~~~~W~~L~ 121 (148)
T cd04010 96 FLGEVRIPLRGLDLQAGSHQAWYFLQ 121 (148)
T ss_pred eeEEEEEecccccccCCcCcceeecC
Confidence 99999999999986523458999997
No 31
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=2.1e-19 Score=103.66 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=71.1
Q ss_pred CCCCcEEEEEECCeEEEeeeeCCCCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccC-CCCCCeE
Q 037768 11 GSVDPYVVLTCRTQEQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFME-GSLPPTA 89 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~~~T~~~~~~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~-~~~~~~~ 89 (111)
+..||||.+.+++.+.+|++.++.||.|||.|.|.+......|.|+|||++.+ .|++||++.++|+++..+ ....++|
T Consensus 18 ~~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~W 96 (127)
T cd08394 18 DKFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEW 96 (127)
T ss_pred CCCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCcc
Confidence 34599999999998888988877999999999999987666799999999865 699999999999998744 3445899
Q ss_pred EEec
Q 037768 90 YNVV 93 (111)
Q Consensus 90 ~~l~ 93 (111)
|+|.
T Consensus 97 y~L~ 100 (127)
T cd08394 97 LTLD 100 (127)
T ss_pred EecC
Confidence 9997
No 32
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=9.8e-20 Score=104.07 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=67.8
Q ss_pred cCCCCcEEEEEECC----eEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 10 AGSVDPYVVLTCRT----QEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 10 ~~~~dp~v~v~~~~----~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
.|.+||||++++.. .+++|++.++ +||.|||+|.|.+.. ....|.|+|||.+.++++++||++.++++++..
T Consensus 29 ~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 29 DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccC
Confidence 46689999999843 4578999999 999999999999886 345899999999999999999999999998753
Q ss_pred CCCCCCeEEEe
Q 037768 82 EGSLPPTAYNV 92 (111)
Q Consensus 82 ~~~~~~~~~~l 92 (111)
+.. ...|..|
T Consensus 109 ~~~-~~~W~~~ 118 (118)
T cd08677 109 MLG-AAQWVDL 118 (118)
T ss_pred Ccc-ccchhcC
Confidence 332 4567654
No 33
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.82 E-value=1.6e-19 Score=104.86 Aligned_cols=95 Identities=22% Similarity=0.389 Sum_probs=81.1
Q ss_pred cCCCCcEEEEEECC-eEEEeeeeC-C-CCCcccceEEEEEcCC-----CceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 10 AGSVDPYVVLTCRT-QEQKSSIGS-G-SGPEWNETFVFTITGD-----VTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-~~~~T~~~~-~-~~P~w~e~~~f~~~~~-----~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
.+.+||||++++++ ..++|++.. + .+|.|+|.|.|.+... ...|.+++||++..+++++||++.+++.++..
T Consensus 18 ~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~ 97 (125)
T cd04051 18 FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD 97 (125)
T ss_pred ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhc
Confidence 57899999999977 778888875 5 9999999999999876 46899999999987889999999999999976
Q ss_pred CCCC----CCeEEEec-cCCeEeeEEEE
Q 037768 82 EGSL----PPTAYNVV-KNQEYCGEIRV 104 (111)
Q Consensus 82 ~~~~----~~~~~~l~-~~~~~~G~l~l 104 (111)
+... ...||+|. .+++.+|.|++
T Consensus 98 ~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 98 GASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred ccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 5543 47899998 67888898864
No 34
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.82 E-value=1.1e-18 Score=101.70 Aligned_cols=94 Identities=27% Similarity=0.516 Sum_probs=78.4
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCC-----------CCCceeEEEEEECc
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTF-----------SNDDYLGEATISLE 77 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~-----------~~~~~lG~~~~~l~ 77 (111)
.|.+||||++.+++...+|+++.+ .+|.|+|+|.|.+..+...|.|+|||++.. +.+++||++.+++.
T Consensus 19 ~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~ 98 (127)
T cd04027 19 TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVR 98 (127)
T ss_pred CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhH
Confidence 567899999999888889999999 999999999999876666899999998742 46899999999999
Q ss_pred ccccCCCCCCeEEEecc---CCeEeeEEEEEE
Q 037768 78 PLFMEGSLPPTAYNVVK---NQEYCGEIRVGL 106 (111)
Q Consensus 78 ~l~~~~~~~~~~~~l~~---~~~~~G~l~l~~ 106 (111)
++. .....|+.|.+ ....+|+|.+++
T Consensus 99 ~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 99 TLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred Hcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 874 22479999983 345689998864
No 35
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=4.7e-19 Score=102.61 Aligned_cols=82 Identities=22% Similarity=0.373 Sum_probs=69.3
Q ss_pred cCCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEE-cC---CCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 10 AGSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTI-TG---DVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 10 ~~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~-~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
.+.+||||++++. ...++|+++++ .||.|||+|.|.+ .. ....|.++|||++..+++++||++.+++.++
T Consensus 30 ~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l 109 (122)
T cd08381 30 GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKL 109 (122)
T ss_pred CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEecccc
Confidence 5678999999985 23578999999 9999999999997 32 3458999999999998999999999999999
Q ss_pred ccCCCCCCeEEEe
Q 037768 80 FMEGSLPPTAYNV 92 (111)
Q Consensus 80 ~~~~~~~~~~~~l 92 (111)
... .....||+|
T Consensus 110 ~~~-~~~~~W~~L 121 (122)
T cd08381 110 DLS-QETEKWYPL 121 (122)
T ss_pred ccC-CCccceEEC
Confidence 854 335799987
No 36
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=1.3e-18 Score=103.24 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=70.9
Q ss_pred cCCCCcEEEEEEC--C---eEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEE-eCCCCCCCceeEEEEEECcccccC
Q 037768 10 AGSVDPYVVLTCR--T---QEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIM-DKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 10 ~~~~dp~v~v~~~--~---~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~-~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
.|.+||||++++. + .+++|+++++ +||.|||+|.|.+......|.++|| +++..+++++||++.++|+.+..+
T Consensus 48 ~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~ 127 (146)
T cd04028 48 KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLS 127 (146)
T ss_pred CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCC
Confidence 3568999999983 2 2579999999 9999999999999866669999999 567777899999999999998644
Q ss_pred CCCCCeEEEeccC
Q 037768 83 GSLPPTAYNVVKN 95 (111)
Q Consensus 83 ~~~~~~~~~l~~~ 95 (111)
.. ...||+|.+.
T Consensus 128 ~~-~~~Wy~L~~~ 139 (146)
T cd04028 128 NL-VIGWYKLFPT 139 (146)
T ss_pred CC-ceeEEecCCc
Confidence 43 4799999843
No 37
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.80 E-value=1.2e-18 Score=101.68 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=70.1
Q ss_pred CCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 11 GSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 11 ~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
|.+||||++++. ...++|+++++ .+|.|||+|.|.+... ...|.+.||+.+..+++++||++.+++.++..
T Consensus 35 g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 35 KKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred CCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence 778999999983 22568999999 9999999999998762 45899999999988899999999999999965
Q ss_pred C--CCCCCeEEEe
Q 037768 82 E--GSLPPTAYNV 92 (111)
Q Consensus 82 ~--~~~~~~~~~l 92 (111)
. .+....||+|
T Consensus 115 ~~~~~~~~~W~~l 127 (128)
T cd08392 115 EDTDSQRFLWYPL 127 (128)
T ss_pred CCCCccccceEEC
Confidence 4 3467899987
No 38
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.80 E-value=1.2e-18 Score=98.51 Aligned_cols=84 Identities=27% Similarity=0.438 Sum_probs=72.5
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccCC-CC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEG-SL 85 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~-~~ 85 (111)
..+.+||||++.+++..++|+++++ .+|.|||.|.|.+..+ ...|.|+||+++. +++||++.+++.++.... ..
T Consensus 17 ~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~ 93 (105)
T cd04050 17 STKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDLT 93 (105)
T ss_pred cCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEEEEEEHHHhhccccce
Confidence 3578999999999999999999999 9999999999999874 4589999999875 889999999999997543 34
Q ss_pred CCeEEEeccC
Q 037768 86 PPTAYNVVKN 95 (111)
Q Consensus 86 ~~~~~~l~~~ 95 (111)
..+||+|...
T Consensus 94 ~~~w~~L~~~ 103 (105)
T cd04050 94 LDQPFPLDNS 103 (105)
T ss_pred eeeeEecCCC
Confidence 6899999743
No 39
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=1.4e-18 Score=100.18 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=69.0
Q ss_pred CCCCcEEEEEE-C----C--eEEEeeeeCC-CCCcccceEEEEEcCC----CceEEEEEEeCCCCCCCceeEEEEEECcc
Q 037768 11 GSVDPYVVLTC-R----T--QEQKSSIGSG-SGPEWNETFVFTITGD----VTELTLKIMDKDTFSNDDYLGEATISLEP 78 (111)
Q Consensus 11 ~~~dp~v~v~~-~----~--~~~~T~~~~~-~~P~w~e~~~f~~~~~----~~~l~i~v~~~~~~~~~~~lG~~~~~l~~ 78 (111)
|.+||||++++ + . ..++|+++.+ .||.|||+|.|.+... ...|.|.|||++..+++++||++.+++.+
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~ 97 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD 97 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence 78899999997 3 2 2468999999 9999999999998752 13689999999877889999999999999
Q ss_pred cccCCCCCCeEEEec
Q 037768 79 LFMEGSLPPTAYNVV 93 (111)
Q Consensus 79 l~~~~~~~~~~~~l~ 93 (111)
+..++. ...|++|.
T Consensus 98 ~~~~~~-~~~w~~L~ 111 (120)
T cd08395 98 IAQAGS-CACWLPLG 111 (120)
T ss_pred CcCCCc-EEEEEECc
Confidence 986554 57899997
No 40
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.79 E-value=1.4e-18 Score=98.93 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=73.5
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcc-cceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccccC--
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEW-NETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLFME-- 82 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w-~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~-- 82 (111)
.+.+||||++.+++..++|+++++ .+|.| +|+|.|.+... ...|.|+|||++..+++++||++.+++.++...
T Consensus 18 ~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~ 97 (110)
T cd08688 18 SDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDS 97 (110)
T ss_pred CCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCC
Confidence 467899999999988899999999 99999 99999998763 358999999999988899999999999999763
Q ss_pred CCCCCeEEEec
Q 037768 83 GSLPPTAYNVV 93 (111)
Q Consensus 83 ~~~~~~~~~l~ 93 (111)
......||+|.
T Consensus 98 ~~~~~~w~~l~ 108 (110)
T cd08688 98 VSQISGWFPIY 108 (110)
T ss_pred ccccCCeEEcc
Confidence 23468999985
No 41
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=1.2e-18 Score=101.24 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=69.7
Q ss_pred CCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 11 GSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 11 ~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
|.+||||++++. ...++|+++++ .||.|||+|.|.+.. ....|.++|||++..+++++||++.+++.++..
T Consensus 35 g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~ 114 (125)
T cd08393 35 QRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDW 114 (125)
T ss_pred CCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCcccc
Confidence 678999999983 23468999999 999999999999875 345899999999999999999999999999975
Q ss_pred CCCCCCeEEEec
Q 037768 82 EGSLPPTAYNVV 93 (111)
Q Consensus 82 ~~~~~~~~~~l~ 93 (111)
. .....||+|+
T Consensus 115 ~-~~~~~W~~L~ 125 (125)
T cd08393 115 S-NTQPTWYPLQ 125 (125)
T ss_pred C-CCCcceEECc
Confidence 5 4457899874
No 42
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.79 E-value=9e-18 Score=97.64 Aligned_cols=98 Identities=19% Similarity=0.335 Sum_probs=79.8
Q ss_pred ecCCCCcEEEEEECC---eEEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccC-
Q 037768 9 LAGSVDPYVVLTCRT---QEQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFME- 82 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~---~~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~- 82 (111)
..+.+||||++.... ...+|+++++ .+|.|+|+|.|.+... ...|.|+||+++..+++++||++.++++++...
T Consensus 18 ~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~ 97 (126)
T cd04043 18 SNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGD 97 (126)
T ss_pred CCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCC
Confidence 357789999998753 3479999999 9999999999998874 458999999999888899999999999986533
Q ss_pred -CCCCCeEEEeccCCeEeeEEEEEEEEEe
Q 037768 83 -GSLPPTAYNVVKNQEYCGEIRVGLTFTP 110 (111)
Q Consensus 83 -~~~~~~~~~l~~~~~~~G~l~l~~~~~~ 110 (111)
+.....|++|.. +|.+.+.+.|.-
T Consensus 98 ~~~~~~~w~~l~~----~g~i~l~~~~~~ 122 (126)
T cd04043 98 DGLPREIWLDLDT----QGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEcCC----CCeEEEEEEEee
Confidence 334578999964 588888887753
No 43
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.79 E-value=1e-17 Score=97.44 Aligned_cols=96 Identities=29% Similarity=0.461 Sum_probs=78.7
Q ss_pred cCCCCcEEEEEECCe-EEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCC--
Q 037768 10 AGSVDPYVVLTCRTQ-EQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSL-- 85 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~-~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~-- 85 (111)
.+.+||||++.+++. ..+|+++++ .+|.|++.|.|.+. ....|.|+|||++..+.+++||++.++++++......
T Consensus 19 ~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~ 97 (125)
T cd04021 19 SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKL 97 (125)
T ss_pred CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCc
Confidence 567999999999876 789999999 99999999999986 4568999999999988899999999999998754332
Q ss_pred C--CeEEEeccCC----eEeeEEEEEE
Q 037768 86 P--PTAYNVVKNQ----EYCGEIRVGL 106 (111)
Q Consensus 86 ~--~~~~~l~~~~----~~~G~l~l~~ 106 (111)
. ..|+++.+.. ...|.|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 98 ENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred cceEEEEEEEccCCCcceeeeeEEEEe
Confidence 2 2478887333 5678888765
No 44
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.79 E-value=2.7e-18 Score=97.49 Aligned_cols=72 Identities=25% Similarity=0.527 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCC--ceEEEEEEeCCCCCCCceeEEEEEECcccccCC
Q 037768 12 SVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDV--TELTLKIMDKDTFSNDDYLGEATISLEPLFMEG 83 (111)
Q Consensus 12 ~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~--~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~ 83 (111)
.+||||++++++..++|+++++ .+|.|+|.|.|.+.... ..|.|+|||++..+++++||++.++|+++..+.
T Consensus 25 ~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 25 DMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 4799999999988899999999 99999999999987633 378999999999999999999999999997543
No 45
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=2.9e-18 Score=99.71 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=70.3
Q ss_pred cCCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+.+||||++++. ...++|+++++ .+|.|||+|.|.+.. ....|.|+|||++..+++++||++.+++.++.
T Consensus 34 ~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 34 KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc
Confidence 4679999999883 22468999999 999999999999875 24589999999999999999999999999997
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
..+. ...|++|.
T Consensus 114 ~~~~-~~~w~~l~ 125 (125)
T cd04029 114 FDSQ-HEECLPLH 125 (125)
T ss_pred ccCC-cccEEECc
Confidence 5543 68999984
No 46
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.78 E-value=7.9e-18 Score=100.65 Aligned_cols=98 Identities=26% Similarity=0.434 Sum_probs=77.8
Q ss_pred cCCCCcEEEEEE--C---CeEEEeeeeCC-CCCcccceEEEEEcCC---------CceEEEEEEeCCCC-CCCceeEEEE
Q 037768 10 AGSVDPYVVLTC--R---TQEQKSSIGSG-SGPEWNETFVFTITGD---------VTELTLKIMDKDTF-SNDDYLGEAT 73 (111)
Q Consensus 10 ~~~~dp~v~v~~--~---~~~~~T~~~~~-~~P~w~e~~~f~~~~~---------~~~l~i~v~~~~~~-~~~~~lG~~~ 73 (111)
.+.+||||++++ + .+..+|+++++ +||.|||+|.|.+... ...|.++|||++.+ ++|++||++.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 456899999986 2 34679999999 9999999999998653 34799999999875 5699999999
Q ss_pred EECcccccCCCCCCeEEEecc-CCeEeeEEEEEEEE
Q 037768 74 ISLEPLFMEGSLPPTAYNVVK-NQEYCGEIRVGLTF 108 (111)
Q Consensus 74 ~~l~~l~~~~~~~~~~~~l~~-~~~~~G~l~l~~~~ 108 (111)
++++.+..... ...|++|.. .....|.|.+.+..
T Consensus 102 i~L~~l~~~~~-~~~~~~L~~~~k~~Gg~l~v~ir~ 136 (155)
T cd08690 102 VKLEPLETKCE-IHESVDLMDGRKATGGKLEVKVRL 136 (155)
T ss_pred EEcccccccCc-ceEEEEhhhCCCCcCCEEEEEEEe
Confidence 99999975544 356899883 34456777777664
No 47
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=5.1e-18 Score=101.29 Aligned_cols=84 Identities=32% Similarity=0.488 Sum_probs=72.6
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC--CCceEEEEEEeCCCCCCCceeEEEEEECcccccCCC--
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG--DVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS-- 84 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~--~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~-- 84 (111)
.+.+||||++.+++...+|+++++ .||.|||+|.|.+.. ....+.|++||++..+++++||++.+++.++...+.
T Consensus 32 ~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~ 111 (151)
T cd04018 32 KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEG 111 (151)
T ss_pred CCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccc
Confidence 356899999999999999999999 999999999999754 345899999999998899999999999999865442
Q ss_pred ----CCCeEEEec
Q 037768 85 ----LPPTAYNVV 93 (111)
Q Consensus 85 ----~~~~~~~l~ 93 (111)
..+.|+.+.
T Consensus 112 ~lp~~~p~W~~ly 124 (151)
T cd04018 112 FLPTFGPSFVNLY 124 (151)
T ss_pred cCCccCceEEEee
Confidence 357899986
No 48
>PLN03008 Phospholipase D delta
Probab=99.78 E-value=3.9e-18 Score=121.82 Aligned_cols=99 Identities=21% Similarity=0.391 Sum_probs=85.7
Q ss_pred cCCCCcEEEEEECCeE-EEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 10 AGSVDPYVVLTCRTQE-QKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~-~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
.+.+||||+|.+++.+ .+|+++++ .||.|||+|.|.+..+...|.|+|||++.++ +++||++.+|+.++..+.. ..
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~-vd 151 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGER-IS 151 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCc-eE
Confidence 4678999999998764 58999999 9999999999999887779999999999987 6999999999999986544 57
Q ss_pred eEEEecc----CCeEeeEEEEEEEEEe
Q 037768 88 TAYNVVK----NQEYCGEIRVGLTFTP 110 (111)
Q Consensus 88 ~~~~l~~----~~~~~G~l~l~~~~~~ 110 (111)
.|++|.+ ..+..|+|+++++|.|
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~p 178 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTP 178 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEE
Confidence 9999982 2345689999999987
No 49
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.78 E-value=1.3e-17 Score=98.17 Aligned_cols=97 Identities=25% Similarity=0.443 Sum_probs=77.9
Q ss_pred ecCCCCcEEEEEECC-------------eEEEeeeeCC-CCCcc-cceEEEEEcCCCceEEEEEEeCCCCCC---CceeE
Q 037768 9 LAGSVDPYVVLTCRT-------------QEQKSSIGSG-SGPEW-NETFVFTITGDVTELTLKIMDKDTFSN---DDYLG 70 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~-------------~~~~T~~~~~-~~P~w-~e~~~f~~~~~~~~l~i~v~~~~~~~~---~~~lG 70 (111)
+.|++|||+++++.. +.++|+++++ .||.| +|+|.|.+. ....|.++|||+...++ +++||
T Consensus 17 ~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG 95 (137)
T cd08691 17 MFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLG 95 (137)
T ss_pred cCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEE
Confidence 468999999999831 3579999999 99999 999999986 34589999999765443 69999
Q ss_pred EEEEECcccccCCCC--CCeEEEecc---CCeEeeEEEEEE
Q 037768 71 EATISLEPLFMEGSL--PPTAYNVVK---NQEYCGEIRVGL 106 (111)
Q Consensus 71 ~~~~~l~~l~~~~~~--~~~~~~l~~---~~~~~G~l~l~~ 106 (111)
++.+++.++...+.. ...|++|.+ ....+|+|.+.+
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 96 KLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999999765443 567899873 356688888875
No 50
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.78 E-value=2.7e-18 Score=99.54 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=70.7
Q ss_pred cCCCCcEEEEEEC--C----eEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 10 AGSVDPYVVLTCR--T----QEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 10 ~~~~dp~v~v~~~--~----~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
.+.+||||++++- . ..++|++.++ .||.|||+|.|.+.. ....|.+.||+.+..+++++||.+.++++++
T Consensus 32 ~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 32 PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 4678999999972 2 3579999999 999999999999876 3458999999999888999999999999999
Q ss_pred ccCCCCCCeEEEe
Q 037768 80 FMEGSLPPTAYNV 92 (111)
Q Consensus 80 ~~~~~~~~~~~~l 92 (111)
...++....||.|
T Consensus 112 ~~~~~~~~~Wy~l 124 (124)
T cd08680 112 ESSEEMSTKWYNL 124 (124)
T ss_pred cCCCccccccccC
Confidence 7665556789875
No 51
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=7.2e-18 Score=96.14 Aligned_cols=84 Identities=18% Similarity=0.375 Sum_probs=72.3
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCC-----CceEEEEEEeCCCCCCCceeEEEEEECcccccCC
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGD-----VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEG 83 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~-----~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~ 83 (111)
.+.+||||++.++++.++|+++++ .+|.|+|+|.|.+..+ ...|.|+|||++..+++++||++.++++++..+.
T Consensus 18 ~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~ 97 (111)
T cd04011 18 GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQP 97 (111)
T ss_pred CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCC
Confidence 577899999999999999999999 9999999999997543 3479999999998888999999999999996543
Q ss_pred --CCCCeEEEec
Q 037768 84 --SLPPTAYNVV 93 (111)
Q Consensus 84 --~~~~~~~~l~ 93 (111)
.....|++|.
T Consensus 98 ~~~~~~~w~~L~ 109 (111)
T cd04011 98 DHAFLRKWLLLT 109 (111)
T ss_pred CCcceEEEEEee
Confidence 3357899985
No 52
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=1.6e-17 Score=95.93 Aligned_cols=87 Identities=24% Similarity=0.433 Sum_probs=74.7
Q ss_pred ecCCCCcEEEEEECCe-EEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQ-EQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
..+.+||||++.+++. ..+|.+.++ .+|.|++.|.|.+......|.|++||++..+++++||++.+++.++..+ . .
T Consensus 18 ~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~-~ 95 (120)
T cd04045 18 GVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-N-E 95 (120)
T ss_pred CCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-C-C
Confidence 3678999999999764 578888888 9999999999998877779999999999988899999999999999855 3 4
Q ss_pred CeEEEeccCCe
Q 037768 87 PTAYNVVKNQE 97 (111)
Q Consensus 87 ~~~~~l~~~~~ 97 (111)
..||.+.++.+
T Consensus 96 ~~~~~~~~~~~ 106 (120)
T cd04045 96 DGKYVEYDDEE 106 (120)
T ss_pred CceEEecCCCc
Confidence 78899885543
No 53
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.76 E-value=1.3e-17 Score=96.77 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=71.0
Q ss_pred cCCCCcEEEEEEC---CeEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 10 AGSVDPYVVLTCR---TQEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 10 ~~~~dp~v~v~~~---~~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
.|.+||||++.+. ...++|+++++ .+|.|+|+|.|.+... ...|.++|||++.++++++||++.++++++..+
T Consensus 34 ~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 113 (124)
T cd08387 34 SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLS 113 (124)
T ss_pred CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCC
Confidence 5678999999983 33579999999 9999999999998753 458999999999988999999999999999855
Q ss_pred CCCCCeEEEec
Q 037768 83 GSLPPTAYNVV 93 (111)
Q Consensus 83 ~~~~~~~~~l~ 93 (111)
+ ....||+|.
T Consensus 114 ~-~~~~W~~l~ 123 (124)
T cd08387 114 E-KLDLWRKIQ 123 (124)
T ss_pred C-CcceEEECc
Confidence 5 458899874
No 54
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=1.4e-17 Score=96.65 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=67.5
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcC----CCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITG----DVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~----~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
.+.+||||++.+.. ..++|+++++ .+|.|+|+|.|.+.. ....|.|+|||++..+++++||++.+++.+.
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 34 GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc
Confidence 46789999999853 4568999999 999999999998644 2458999999999888899999999999984
Q ss_pred ccCCCCCCeEEEec
Q 037768 80 FMEGSLPPTAYNVV 93 (111)
Q Consensus 80 ~~~~~~~~~~~~l~ 93 (111)
..+ ....||+|.
T Consensus 114 ~~~--~~~~W~~L~ 125 (125)
T cd04031 114 LLD--DEPHWYPLQ 125 (125)
T ss_pred ccc--CCcceEECc
Confidence 322 247899984
No 55
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.76 E-value=5.5e-17 Score=96.17 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=79.8
Q ss_pred CCCcEEEEEECCeEE-EeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCC----CCCceeEEEEEECcccccCCCC
Q 037768 12 SVDPYVVLTCRTQEQ-KSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTF----SNDDYLGEATISLEPLFMEGSL 85 (111)
Q Consensus 12 ~~dp~v~v~~~~~~~-~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~----~~~~~lG~~~~~l~~l~~~~~~ 85 (111)
+.+|||.+.+++... ||+++.+ .+|.|+|.|.|........+.|.+|..+.. .++++||.+.+|++++.. +..
T Consensus 26 ~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~-~~~ 104 (146)
T cd04013 26 KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS-RQF 104 (146)
T ss_pred cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC-CCc
Confidence 458999999998874 9999999 999999999998665667899999865432 257999999999999984 444
Q ss_pred CCeEEEecc-CC----------eEeeEEEEEEEEEeC
Q 037768 86 PPTAYNVVK-NQ----------EYCGEIRVGLTFTPE 111 (111)
Q Consensus 86 ~~~~~~l~~-~~----------~~~G~l~l~~~~~~~ 111 (111)
.+.||+|.. .+ ...+.|++++.|.+.
T Consensus 105 ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 105 VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 689999982 21 334799999999863
No 56
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.75 E-value=2.9e-17 Score=95.24 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=70.1
Q ss_pred cCCCCcEEEEEEC---CeEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 10 AGSVDPYVVLTCR---TQEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 10 ~~~~dp~v~v~~~---~~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
.+.+||||++.+. ...++|+++++ .+|.|+|+|.|.+.. ....|.|+|||++..+++++||++.++++++..
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~- 112 (124)
T cd08385 34 GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL- 112 (124)
T ss_pred CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccC-
Confidence 5678999999884 23568999999 999999999999875 245899999999998889999999999999864
Q ss_pred CCCCCeEEEec
Q 037768 83 GSLPPTAYNVV 93 (111)
Q Consensus 83 ~~~~~~~~~l~ 93 (111)
+.....|++|.
T Consensus 113 ~~~~~~W~~l~ 123 (124)
T cd08385 113 GHVTEEWRDLE 123 (124)
T ss_pred CCCcceEEEcc
Confidence 44568999874
No 57
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.75 E-value=4.3e-17 Score=93.37 Aligned_cols=94 Identities=24% Similarity=0.330 Sum_probs=77.5
Q ss_pred cCCCCcEEEEEECC-eEEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 10 AGSVDPYVVLTCRT-QEQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-~~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
.+.+||||++.+.+ ..++|+++.+ .+|.|+++|.|.+... ...+.|++||++..+++++||++.+++.++..+ ...
T Consensus 17 ~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~ 95 (115)
T cd04040 17 NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPE-ETT 95 (115)
T ss_pred CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCC-CcE
Confidence 56789999999964 4479999999 9999999999998863 568999999999888899999999999998754 345
Q ss_pred CeEEEec-cCCeEeeEEEE
Q 037768 87 PTAYNVV-KNQEYCGEIRV 104 (111)
Q Consensus 87 ~~~~~l~-~~~~~~G~l~l 104 (111)
..|++|. .++...|.+.+
T Consensus 96 ~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 96 ELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred EEEEECcCCCCccCceEEc
Confidence 7889998 45555666643
No 58
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.74 E-value=1e-16 Score=93.02 Aligned_cols=85 Identities=52% Similarity=0.916 Sum_probs=73.6
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeC-C-CCCcccceEEEEEcCC----CceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGS-G-SGPEWNETFVFTITGD----VTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~-~-~~P~w~e~~~f~~~~~----~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
..+.+||||++++++..++|++.. + .+|.|++.|.|.+..+ ...|.|+|||++..+++++||++.+++.++..+
T Consensus 18 ~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~ 97 (124)
T cd04049 18 FLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEE 97 (124)
T ss_pred CCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhC
Confidence 357899999999988888888877 4 8999999999999875 458999999999888899999999999999865
Q ss_pred CCCCCeEEEecc
Q 037768 83 GSLPPTAYNVVK 94 (111)
Q Consensus 83 ~~~~~~~~~l~~ 94 (111)
+. ...|+.|..
T Consensus 98 ~~-~~~~~~l~p 108 (124)
T cd04049 98 GV-EPGTAELVP 108 (124)
T ss_pred CC-CcCceEeec
Confidence 44 588999973
No 59
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.74 E-value=3.2e-17 Score=97.36 Aligned_cols=72 Identities=44% Similarity=0.719 Sum_probs=66.6
Q ss_pred CCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 11 GSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
+.+||||++.++++.++|+++++ .+|.|+|+|.|.+..+...+.|++||++.++++++||++.+++.++...
T Consensus 20 ~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 67899999999999999999999 9999999999999877779999999999999999999999999998543
No 60
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=3.1e-17 Score=94.60 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=66.9
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCC--CceEEEEEEeCCCCC-CCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGD--VTELTLKIMDKDTFS-NDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~--~~~l~i~v~~~~~~~-~~~~lG~~~~~l~~l~ 80 (111)
.|.+||||++++.. ..++|+++++ .+|.|||+|.|.+... ...+.++||+++..+ ++++||.+.+++.++.
T Consensus 29 ~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 29 SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 46689999999842 3468999999 9999999999998753 347889999988765 4789999999999998
Q ss_pred cCCCCCCeEEEe
Q 037768 81 MEGSLPPTAYNV 92 (111)
Q Consensus 81 ~~~~~~~~~~~l 92 (111)
. +....+||.|
T Consensus 109 ~-~~~~~~Wy~l 119 (119)
T cd08685 109 N-QKEISGWYYL 119 (119)
T ss_pred c-CccccceEeC
Confidence 4 4445799976
No 61
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=5.8e-17 Score=94.30 Aligned_cols=83 Identities=24% Similarity=0.405 Sum_probs=69.6
Q ss_pred cCCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCC--CCCceeEEEEEECcc
Q 037768 10 AGSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTF--SNDDYLGEATISLEP 78 (111)
Q Consensus 10 ~~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~--~~~~~lG~~~~~l~~ 78 (111)
.+.+||||++.+. ...++|+++++ .+|.|+|+|.|.+... ...|.+.+|+++.. +++++||++.+++++
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 34 SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 5779999999984 34579999999 9999999999998753 35899999998875 679999999999999
Q ss_pred cccCCCCCCeEEEec
Q 037768 79 LFMEGSLPPTAYNVV 93 (111)
Q Consensus 79 l~~~~~~~~~~~~l~ 93 (111)
+..+ .....||+|.
T Consensus 114 l~~~-~~~~~W~~L~ 127 (127)
T cd04030 114 LDLS-KGFTQWYDLT 127 (127)
T ss_pred cccc-CCccceEECc
Confidence 8744 4468999873
No 62
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.73 E-value=5.5e-17 Score=95.66 Aligned_cols=84 Identities=27% Similarity=0.496 Sum_probs=72.6
Q ss_pred ecCCCCcEEEEEEC----CeEEEeeeeCC-CCCcccceEEEEEcCC----------------CceEEEEEEeCCCCCCCc
Q 037768 9 LAGSVDPYVVLTCR----TQEQKSSIGSG-SGPEWNETFVFTITGD----------------VTELTLKIMDKDTFSNDD 67 (111)
Q Consensus 9 ~~~~~dp~v~v~~~----~~~~~T~~~~~-~~P~w~e~~~f~~~~~----------------~~~l~i~v~~~~~~~~~~ 67 (111)
..+.+||||++.+. ...++|+++++ .+|.|+|+|.|.+... ...+.|+|||.+..++++
T Consensus 15 ~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~ 94 (137)
T cd08675 15 SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD 94 (137)
T ss_pred cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc
Confidence 46789999999997 56789999999 9999999999998763 348999999999888899
Q ss_pred eeEEEEEECcccccCCCCCCeEEEec
Q 037768 68 YLGEATISLEPLFMEGSLPPTAYNVV 93 (111)
Q Consensus 68 ~lG~~~~~l~~l~~~~~~~~~~~~l~ 93 (111)
+||++.+++.++...+ ....|++|.
T Consensus 95 ~IG~~~i~l~~l~~~~-~~~~W~~L~ 119 (137)
T cd08675 95 FLGEVRIPLQGLQQAG-SHQAWYFLQ 119 (137)
T ss_pred EEEEEEEehhhccCCC-cccceEecC
Confidence 9999999999987443 358999998
No 63
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.73 E-value=1.3e-16 Score=91.62 Aligned_cols=95 Identities=23% Similarity=0.379 Sum_probs=70.6
Q ss_pred CCCCcEEEEEECCeE-EEeeeeCCCCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 11 GSVDPYVVLTCRTQE-QKSSIGSGSGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~-~~T~~~~~~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
+.+||||.+++++.. ++|+++++.+|.|+|+|.|.+... ...+.+.+|+++....+..+|.+. +..+.. +...
T Consensus 16 ~~~dpyv~v~~~~~~~~kT~~~~~~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~--l~~~~~-~~~~ 92 (117)
T cd08383 16 GTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA--LSKLDL-GQGK 92 (117)
T ss_pred CCCCceEEEEECCEEeEecceEECCCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE--ecCcCC-CCcc
Confidence 678999999998754 678776449999999999998863 346788889887665566666655 444443 3446
Q ss_pred CeEEEecc---CCeEeeEEEEEEEE
Q 037768 87 PTAYNVVK---NQEYCGEIRVGLTF 108 (111)
Q Consensus 87 ~~~~~l~~---~~~~~G~l~l~~~~ 108 (111)
..|++|.+ .....|+|++.++|
T Consensus 93 ~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 93 DEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEECccCCCCCCcCceEEEEEEC
Confidence 89999973 24458999999876
No 64
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=3.1e-17 Score=93.56 Aligned_cols=79 Identities=30% Similarity=0.452 Sum_probs=67.1
Q ss_pred CCCCcEEEEEEC---CeEEEeeeeCC-CCCcccceEEEEEcCC----CceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 11 GSVDPYVVLTCR---TQEQKSSIGSG-SGPEWNETFVFTITGD----VTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 11 ~~~dp~v~v~~~---~~~~~T~~~~~-~~P~w~e~~~f~~~~~----~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
+.+||||++.+. ...++|+++++ .+|.|+|+|.|.+... ...|.++|||++..+++++||++.+++.++..
T Consensus 21 ~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~- 99 (111)
T cd04041 21 GSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE- 99 (111)
T ss_pred CCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc-
Confidence 789999999883 34579999999 9999999999987653 35899999999999889999999999999973
Q ss_pred CCCCCeEEEec
Q 037768 83 GSLPPTAYNVV 93 (111)
Q Consensus 83 ~~~~~~~~~l~ 93 (111)
...|+++.
T Consensus 100 ---~~~~~~~~ 107 (111)
T cd04041 100 ---DRNWMGRR 107 (111)
T ss_pred ---CCCCCccc
Confidence 35677765
No 65
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.73 E-value=3.4e-17 Score=94.55 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=69.3
Q ss_pred ecCCCCcEEEEEECCe-------EEEeeeeCC-CCCcccceEEEEEcC-CCceEEEEEEeCCC----CCCCceeEEEEEE
Q 037768 9 LAGSVDPYVVLTCRTQ-------EQKSSIGSG-SGPEWNETFVFTITG-DVTELTLKIMDKDT----FSNDDYLGEATIS 75 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-------~~~T~~~~~-~~P~w~e~~~f~~~~-~~~~l~i~v~~~~~----~~~~~~lG~~~~~ 75 (111)
..|.+||||++.+... .++|+++++ .+|.|+|+|.|.+.. ....+.|+|||++. .+++++||++.++
T Consensus 17 ~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~ 96 (120)
T cd04048 17 VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECT 96 (120)
T ss_pred CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEE
Confidence 4678999999998543 379999999 999999999998654 34589999999986 7889999999999
Q ss_pred CcccccCCCCCCeEEEec
Q 037768 76 LEPLFMEGSLPPTAYNVV 93 (111)
Q Consensus 76 l~~l~~~~~~~~~~~~l~ 93 (111)
+.++..+. ....|+.|.
T Consensus 97 l~~l~~~~-~~~~~~~l~ 113 (120)
T cd04048 97 LGEIVSSP-GQKLTLPLK 113 (120)
T ss_pred HHHHhcCC-CcEEEEEcc
Confidence 99998543 345677773
No 66
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.72 E-value=2e-17 Score=126.56 Aligned_cols=100 Identities=23% Similarity=0.470 Sum_probs=86.5
Q ss_pred ecCCCCcEEEEEECCe-EEEeeeeCC-CCCcccceEEEEEcCCC--ceEEEEEEeCCCCCCCceeEEEEEECcccccCCC
Q 037768 9 LAGSVDPYVVLTCRTQ-EQKSSIGSG-SGPEWNETFVFTITGDV--TELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-~~~T~~~~~-~~P~w~e~~~f~~~~~~--~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~ 84 (111)
..|.+||||++.++++ +.+|+++++ .||.|||.|.|.+..+. ..++|+|||++.++ ++.+|.+.+++.++..++.
T Consensus 1995 ~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~-kd~~G~~~i~l~~vv~~~~ 2073 (2102)
T PLN03200 1995 SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG-KSSLGKVTIQIDRVVMEGT 2073 (2102)
T ss_pred ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC-CCCCceEEEEHHHHhcCce
Confidence 3688999999999966 678999999 99999999998887754 57999999999886 5589999999999996555
Q ss_pred CCCeEEEeccCCeEeeE---EEEEEEEEe
Q 037768 85 LPPTAYNVVKNQEYCGE---IRVGLTFTP 110 (111)
Q Consensus 85 ~~~~~~~l~~~~~~~G~---l~l~~~~~~ 110 (111)
...||+|.+++++.|. |.+.+.|.+
T Consensus 2074 -~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2074 -YSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -eeeeeecCcccccCCCcceEEEEEEecC
Confidence 5799999976677788 999999875
No 67
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=1.5e-16 Score=92.38 Aligned_cols=83 Identities=25% Similarity=0.450 Sum_probs=69.1
Q ss_pred cCCCCcEEEEEEC---CeEEEeeeeCC-CCCcccceEEEEEcC----CCceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 10 AGSVDPYVVLTCR---TQEQKSSIGSG-SGPEWNETFVFTITG----DVTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 10 ~~~~dp~v~v~~~---~~~~~T~~~~~-~~P~w~e~~~f~~~~----~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
.+.+||||++.+. ....+|+++++ .+|.|+|+|.|.... ....|.++|||++..+++++||++.++++++..
T Consensus 34 ~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 34 SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC
Confidence 5678999999983 34579999999 999999999997533 234799999999988889999999999999975
Q ss_pred CCCCCCeEEEec
Q 037768 82 EGSLPPTAYNVV 93 (111)
Q Consensus 82 ~~~~~~~~~~l~ 93 (111)
+ .....|+.|.
T Consensus 114 ~-~~~~~W~~l~ 124 (125)
T cd08386 114 T-EEQTFWKDLK 124 (125)
T ss_pred C-CCcceEEecC
Confidence 3 3468999874
No 68
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=1.1e-16 Score=92.68 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=68.9
Q ss_pred cCCCCcEEEEEEC-C----eEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCR-T----QEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~-~----~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+.+||||++.+. . ...+|+++++ .+|.|+|+|.|.+... ...|.|++||++..+++++||++.++++++.
T Consensus 33 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 33 KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred CCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEeccccc
Confidence 5678999999873 1 3478999999 9999999999998752 4589999999998888999999999999997
Q ss_pred cCCCCCCeEEEe
Q 037768 81 MEGSLPPTAYNV 92 (111)
Q Consensus 81 ~~~~~~~~~~~l 92 (111)
.+. ....||+|
T Consensus 113 ~~~-~~~~w~~l 123 (123)
T cd08521 113 LDS-QQSEWYPL 123 (123)
T ss_pred ccC-CCccEEEC
Confidence 444 35899986
No 69
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.4e-16 Score=108.54 Aligned_cols=101 Identities=27% Similarity=0.441 Sum_probs=83.3
Q ss_pred cCCCCcEEEEEEC---CeEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 10 AGSVDPYVVLTCR---TQEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 10 ~~~~dp~v~v~~~---~~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
.|.+||||++++. ..+.+|++.++ +||.|+|+|.|.+.. ....|.+.|||.+.+++++++|++.+++..+...
T Consensus 185 ~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~ 264 (421)
T KOG1028|consen 185 GGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLL 264 (421)
T ss_pred CCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCcccccc
Confidence 4568999999984 24579999999 999999999999765 3458999999999999999999999998887654
Q ss_pred CCCCCeEEEecc----CCeEeeEEEEEEEEEeC
Q 037768 83 GSLPPTAYNVVK----NQEYCGEIRVGLTFTPE 111 (111)
Q Consensus 83 ~~~~~~~~~l~~----~~~~~G~l~l~~~~~~~ 111 (111)
.. ...|.++.. .....|+|.++++|.|+
T Consensus 265 ~~-~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 265 ST-TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred cc-ceeeeccccccCCcccccceEEEEEEeecC
Confidence 44 467999872 22233899999999985
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.71 E-value=1.4e-16 Score=92.71 Aligned_cols=72 Identities=28% Similarity=0.399 Sum_probs=63.3
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC--CCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG--DVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~--~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
..+.+|||++|.+++..++|+++++ .+|.|+|+|.|.... ....|.|+|||++..+++++||++.+++....
T Consensus 44 ~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 44 YFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred cCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 3567899999999888899999999 999999999997433 35589999999999989999999999999654
No 71
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=3.3e-16 Score=90.64 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=69.8
Q ss_pred cCCCCcEEEEEEC---CeEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 10 AGSVDPYVVLTCR---TQEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 10 ~~~~dp~v~v~~~---~~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
.+.+||||++++. ....+|+++++ .+|.|+|.|.|.+... ...|.|+|||.+..+++++||++.++++++...
T Consensus 33 ~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 33 VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecC
Confidence 5678999999973 34568999999 9999999999998753 357999999999888899999999999999854
Q ss_pred CCCCCeEEEec
Q 037768 83 GSLPPTAYNVV 93 (111)
Q Consensus 83 ~~~~~~~~~l~ 93 (111)
.. ...|++|.
T Consensus 113 ~~-~~~w~~L~ 122 (123)
T cd08390 113 KG-GVVWRDLE 122 (123)
T ss_pred CC-ceEEEeCC
Confidence 43 47899874
No 72
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=2.4e-16 Score=91.96 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=66.5
Q ss_pred CCCCcEEEEEEC---CeEEEeeeeCC-CCCcccceEEEE-EcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 11 GSVDPYVVLTCR---TQEQKSSIGSG-SGPEWNETFVFT-ITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 11 ~~~dp~v~v~~~---~~~~~T~~~~~-~~P~w~e~~~f~-~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
+.+||||++.+. ....+|+++++ .||.|||+|.|. +.. ....|.++||+++..+++++||++.++++++...
T Consensus 36 ~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 36 GTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence 678999999884 33468999999 999999999994 443 2347999999999888999999999999999644
Q ss_pred -CCCCCeEEEec
Q 037768 83 -GSLPPTAYNVV 93 (111)
Q Consensus 83 -~~~~~~~~~l~ 93 (111)
+.....|.+++
T Consensus 116 ~~~~~~~~~~~~ 127 (128)
T cd08388 116 NEGELLVSREIQ 127 (128)
T ss_pred CCceEEEEEecc
Confidence 22246777764
No 73
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=6.4e-16 Score=89.74 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=67.3
Q ss_pred cCCCCcEEEEEE-C--CeEEEeeeeCCCCCcccceEEEE-EcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 10 AGSVDPYVVLTC-R--TQEQKSSIGSGSGPEWNETFVFT-ITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 10 ~~~~dp~v~v~~-~--~~~~~T~~~~~~~P~w~e~~~f~-~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
.+.+||||++.+ + ...++|++.++.||.|||+|.|. +.. ....|.+.||+++..+++++||++.++++++..+
T Consensus 34 ~~~~d~yVk~~llp~~~~~~kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 34 GGASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred CCCCCcEEEEEEccCCcceeecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCC
Confidence 466899999876 2 34568887655999999999998 554 3458999999999999999999999999999754
Q ss_pred CCCCCeEEEec
Q 037768 83 GSLPPTAYNVV 93 (111)
Q Consensus 83 ~~~~~~~~~l~ 93 (111)
.....|++|.
T Consensus 114 -~~~~~w~~L~ 123 (124)
T cd08389 114 -GETTVWLTLE 123 (124)
T ss_pred -CCceEEEeCC
Confidence 4468999885
No 74
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.68 E-value=9.5e-18 Score=112.67 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=72.0
Q ss_pred ecCCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcCC--CceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 9 LAGSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITGD--VTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 9 ~~~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~~--~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+|.+||||++.+- ..+++|++++. +||+|||+|.|.+.+. ++.|.|+|||++..++++|+|..++.++++.
T Consensus 197 pNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 197 PNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred CCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh
Confidence 37889999999882 33578999999 9999999999999874 4589999999999999999999999999997
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
... ...||.|+
T Consensus 277 K~p--~~GWyKlL 287 (683)
T KOG0696|consen 277 KAP--VDGWYKLL 287 (683)
T ss_pred hcc--hhhHHHHh
Confidence 543 47899886
No 75
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.5e-16 Score=90.84 Aligned_cols=73 Identities=26% Similarity=0.459 Sum_probs=62.9
Q ss_pred ecCCCCcEEEEEECCeE--EEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 9 LAGSVDPYVVLTCRTQE--QKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~--~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
..|.+||||++.+++.. .+|.++++ .+|.|+|+|.|.+..+ ...|.|+|||++..+++++||++.+++++...
T Consensus 17 ~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 17 PNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 35789999999997765 47788888 9999999999997654 45899999999998889999999999998764
No 76
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=4.8e-16 Score=90.94 Aligned_cols=83 Identities=27% Similarity=0.463 Sum_probs=70.8
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCC--CceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGD--VTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~--~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
.+.+||||++.+.+ ..++|+++++ .+|.|+++|.|.+... ...|.+++|+++..+++++||++.++++++..
T Consensus 31 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 31 NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK 110 (131)
T ss_pred CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCc
Confidence 45789999999852 4579999999 9999999999998764 35899999999988889999999999999974
Q ss_pred CCCCCCeEEEecc
Q 037768 82 EGSLPPTAYNVVK 94 (111)
Q Consensus 82 ~~~~~~~~~~l~~ 94 (111)
. ....||+|.+
T Consensus 111 ~--~~~~w~~L~~ 121 (131)
T cd04026 111 M--PVDGWYKLLN 121 (131)
T ss_pred C--ccCceEECcC
Confidence 3 4679999973
No 77
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=7.6e-16 Score=93.12 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=67.8
Q ss_pred cCCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcC----CCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 10 AGSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITG----DVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 10 ~~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~----~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
.+.+||||++.+. ...++|+++++ .||.|||+|.|.... ....|.|+|||++..+++++||++.+++.++
T Consensus 45 ~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~ 124 (162)
T cd04020 45 GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTG 124 (162)
T ss_pred CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcc
Confidence 4678999999872 34579999999 999999999998543 2347999999999988899999999999998
Q ss_pred ccCCCCCCeEEEec
Q 037768 80 FMEGSLPPTAYNVV 93 (111)
Q Consensus 80 ~~~~~~~~~~~~l~ 93 (111)
...+. ...|+.+.
T Consensus 125 ~~~~~-~~~w~~~~ 137 (162)
T cd04020 125 KSYGQ-AVDWMDST 137 (162)
T ss_pred ccCCC-ccccccCC
Confidence 64443 46777774
No 78
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.67 E-value=4.4e-15 Score=86.36 Aligned_cols=94 Identities=27% Similarity=0.422 Sum_probs=74.9
Q ss_pred cCCCCcEEEEEEC------CeEEEeeeeCC-C-CCcccceEEEEEcCCC-ceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCR------TQEQKSSIGSG-S-GPEWNETFVFTITGDV-TELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~------~~~~~T~~~~~-~-~P~w~e~~~f~~~~~~-~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+.+||||++++. ...++|+++.+ . +|.|+|+|.|.+..+. ..|.++||+++.. ++++||++.++++++.
T Consensus 22 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 22 GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLR 100 (128)
T ss_pred CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCC-CCcEeEEEEEEhHHhc
Confidence 5678999999982 34578998877 5 9999999999987654 3789999999887 7999999999999985
Q ss_pred cCCCCCCeEEEec-cCC--eEeeEEEEEEEE
Q 037768 81 MEGSLPPTAYNVV-KNQ--EYCGEIRVGLTF 108 (111)
Q Consensus 81 ~~~~~~~~~~~l~-~~~--~~~G~l~l~~~~ 108 (111)
. ...|++|. ..+ ...|.|.+.+++
T Consensus 101 ~----g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 101 Q----GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C----ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 3 24678887 222 456888888775
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=1.1e-15 Score=91.38 Aligned_cols=78 Identities=31% Similarity=0.486 Sum_probs=65.1
Q ss_pred ecCCCCcEEEEEECCe-----------------------------EEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEE
Q 037768 9 LAGSVDPYVVLTCRTQ-----------------------------EQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKI 57 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-----------------------------~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v 57 (111)
..|.+||||++.+... .++|.++++ .+|.|+|+|.|.+... ...|.|+|
T Consensus 45 ~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V 124 (153)
T cd08676 45 VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDI 124 (153)
T ss_pred CCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEE
Confidence 3678999999988421 268899999 9999999999998763 45899999
Q ss_pred EeCCCCCCCceeEEEEEECcccccCCCCCCeEEEe
Q 037768 58 MDKDTFSNDDYLGEATISLEPLFMEGSLPPTAYNV 92 (111)
Q Consensus 58 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~~~~~l 92 (111)
||++ +++||++.++++++.. . ....||+|
T Consensus 125 ~D~d----d~~IG~v~i~l~~l~~-~-~~d~W~~L 153 (153)
T cd08676 125 WDHD----DDFLGCVNIPLKDLPS-C-GLDSWFKL 153 (153)
T ss_pred EecC----CCeEEEEEEEHHHhCC-C-CCCCeEeC
Confidence 9987 8999999999999983 3 35899986
No 80
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=7.1e-16 Score=90.51 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=61.9
Q ss_pred cCCCCcEEEEEEC-------CeEEEeeeeCC-CCCcccceEEEEEcCC-----CceEEEEEEeCCCCCCCceeEEEEEEC
Q 037768 10 AGSVDPYVVLTCR-------TQEQKSSIGSG-SGPEWNETFVFTITGD-----VTELTLKIMDKDTFSNDDYLGEATISL 76 (111)
Q Consensus 10 ~~~~dp~v~v~~~-------~~~~~T~~~~~-~~P~w~e~~~f~~~~~-----~~~l~i~v~~~~~~~~~~~lG~~~~~l 76 (111)
.+.+||||++.+. ...++|+++++ .+|.|+|+|.|.+... ...|.|+|||++..+++++||++.+++
T Consensus 34 ~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 34 NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 4678999999984 23579999999 9999999999998752 348999999999998899999999999
Q ss_pred cccc
Q 037768 77 EPLF 80 (111)
Q Consensus 77 ~~l~ 80 (111)
+++.
T Consensus 114 ~~l~ 117 (133)
T cd04009 114 NDIP 117 (133)
T ss_pred HHCC
Confidence 9986
No 81
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.64 E-value=1.9e-14 Score=82.23 Aligned_cols=70 Identities=24% Similarity=0.471 Sum_probs=58.1
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeC-------CCCCCCceeEEEEEEC
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDK-------DTFSNDDYLGEATISL 76 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~-------~~~~~~~~lG~~~~~l 76 (111)
.+.+||||++.+.. ...+|+++++ ++|.|||+|.|++. ....+.+.|||+ +..+.|+++|.+.+.+
T Consensus 12 ~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 12 KQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred CCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 45689999998842 3479999999 99999999999997 466999999998 3557799999999888
Q ss_pred cccc
Q 037768 77 EPLF 80 (111)
Q Consensus 77 ~~l~ 80 (111)
+.-.
T Consensus 91 d~~~ 94 (118)
T cd08686 91 DPQS 94 (118)
T ss_pred CHHH
Confidence 7543
No 82
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=5.6e-16 Score=90.88 Aligned_cols=81 Identities=25% Similarity=0.483 Sum_probs=66.7
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.|.+||||++.+.. ..++|+++++ .+|.|||+|.|.+... ...|.|+|||++..+++++||++.++++.
T Consensus 31 ~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~-- 108 (133)
T cd08384 31 NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA-- 108 (133)
T ss_pred CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--
Confidence 56789999999842 2468999999 9999999999998753 35899999999988889999999999985
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
.++....|+.+.
T Consensus 109 -~~~~~~~W~~~l 120 (133)
T cd08384 109 -KGERLRHWLDCL 120 (133)
T ss_pred -CCchHHHHHHHH
Confidence 223356888876
No 83
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=6.7e-16 Score=90.93 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=66.0
Q ss_pred cCCCCcEEEEEECC--e---EEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRT--Q---EQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~--~---~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.|.+||||++.+.. . ..+|+++++ .+|.|+|+|.|.+.. ....+.|+|||++..+++++||++.+++.. .
T Consensus 33 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~ 111 (136)
T cd08404 33 SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S 111 (136)
T ss_pred CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-C
Confidence 56789999998832 2 358899999 999999999999875 234788999999999999999999999987 2
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
+.....|+++.
T Consensus 112 --~~~~~~w~~l~ 122 (136)
T cd08404 112 --GSGGHHWKEVC 122 (136)
T ss_pred --CchHHHHHHHH
Confidence 23356788776
No 84
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=4.6e-15 Score=87.35 Aligned_cols=81 Identities=22% Similarity=0.429 Sum_probs=64.5
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.|.+||||++.+.. ..++|+++++ .+|.|+|+|.|.+... ...|.|+|||++..+++++||++.+++...
T Consensus 33 ~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~- 111 (136)
T cd08402 33 GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT- 111 (136)
T ss_pred CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC-
Confidence 56789999999842 2467888888 9999999999998753 237999999999999999999999998763
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
+.....|+++.
T Consensus 112 --~~~~~~W~~~~ 122 (136)
T cd08402 112 --GAELRHWSDML 122 (136)
T ss_pred --ChHHHHHHHHH
Confidence 22235676665
No 85
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.62 E-value=4.6e-15 Score=87.45 Aligned_cols=80 Identities=19% Similarity=0.381 Sum_probs=63.2
Q ss_pred CCCCcEEEEEECCe-----EEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 11 GSVDPYVVLTCRTQ-----EQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 11 ~~~dp~v~v~~~~~-----~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
+.+||||++++... +++|++.++ .||.|||.|.|.++.. ...|.|+|||++..+++++||++.+++..
T Consensus 36 ~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--- 112 (138)
T cd08407 36 LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--- 112 (138)
T ss_pred CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC---
Confidence 44899999998432 358999999 9999999999998862 45899999999999999999999999864
Q ss_pred CCCCCCeEEEec
Q 037768 82 EGSLPPTAYNVV 93 (111)
Q Consensus 82 ~~~~~~~~~~l~ 93 (111)
.++....|..+.
T Consensus 113 ~g~~~~hW~~ml 124 (138)
T cd08407 113 SGTERQHWEEML 124 (138)
T ss_pred CCcHHHHHHHHH
Confidence 222234555543
No 86
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.60 E-value=4.4e-15 Score=84.43 Aligned_cols=72 Identities=18% Similarity=0.447 Sum_probs=60.3
Q ss_pred ecCCCCcEEEEEECCe------EEEeeeeCC-CCCcccceEEEEEcC-----CCceEEEEEEeCCCCCCCceeEEEEEEC
Q 037768 9 LAGSVDPYVVLTCRTQ------EQKSSIGSG-SGPEWNETFVFTITG-----DVTELTLKIMDKDTFSNDDYLGEATISL 76 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~------~~~T~~~~~-~~P~w~e~~~f~~~~-----~~~~l~i~v~~~~~~~~~~~lG~~~~~l 76 (111)
..+.+||||++++... .++|+++++ .+|.|+ +|.|.... ....|.|+|||++..+++++||++.+++
T Consensus 17 ~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 17 FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 4678999999987432 479999999 999999 67776432 1458999999999999999999999999
Q ss_pred ccccc
Q 037768 77 EPLFM 81 (111)
Q Consensus 77 ~~l~~ 81 (111)
+++..
T Consensus 96 ~~l~~ 100 (110)
T cd04047 96 DELLK 100 (110)
T ss_pred HHHhc
Confidence 99973
No 87
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.60 E-value=9.6e-16 Score=89.81 Aligned_cols=83 Identities=23% Similarity=0.485 Sum_probs=68.7
Q ss_pred cCCCCcEEEEEECCe-----EEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRTQ-----EQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~-----~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+.+||||++.+... .++|+++.+ .+|.|+|+|.|.+... ...|.|+||+.+..+++++||++.+++++
T Consensus 32 ~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-- 109 (134)
T cd00276 32 KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-- 109 (134)
T ss_pred CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--
Confidence 567899999998432 468899999 9999999999998764 35899999999988889999999999999
Q ss_pred cCCCCCCeEEEeccC
Q 037768 81 MEGSLPPTAYNVVKN 95 (111)
Q Consensus 81 ~~~~~~~~~~~l~~~ 95 (111)
.+.....|++|..+
T Consensus 110 -~~~~~~~W~~l~~~ 123 (134)
T cd00276 110 -GGEELEHWNEMLAS 123 (134)
T ss_pred -CCcHHHHHHHHHhC
Confidence 23345789988744
No 88
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.59 E-value=8.1e-15 Score=86.28 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=63.7
Q ss_pred cCCCCcEEEEEECC---e--EEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRT---Q--EQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~---~--~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+.+||||++++.. . +.+|+++++ .||.|||+|.|.+.. ....|.|+||+++..+++++||++.+....
T Consensus 33 ~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~-- 110 (136)
T cd08406 33 KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA-- 110 (136)
T ss_pred CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--
Confidence 56789999999822 1 458889999 999999999999875 345899999999999999999999997653
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
.+.....|..+.
T Consensus 111 -~g~~~~hW~~ml 122 (136)
T cd08406 111 -SGMGLSHWNQML 122 (136)
T ss_pred -CChhHHHHHHHH
Confidence 222245666655
No 89
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.58 E-value=2.6e-15 Score=88.43 Aligned_cols=82 Identities=28% Similarity=0.465 Sum_probs=64.7
Q ss_pred ecCCCCcEEEEEEC--C---eEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 9 LAGSVDPYVVLTCR--T---QEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 9 ~~~~~dp~v~v~~~--~---~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
..|.+||||++.+. + ..++|+++++ .+|.|||+|.|.+.. ....|.|+|||++..+++++||++.+++.+.
T Consensus 32 ~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 32 INGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred cCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 36679999999872 2 2468999999 999999999999764 2358999999999988899999999999875
Q ss_pred ccCCCCCCeEEEec
Q 037768 80 FMEGSLPPTAYNVV 93 (111)
Q Consensus 80 ~~~~~~~~~~~~l~ 93 (111)
+.....|+++.
T Consensus 112 ---~~~~~~w~~~~ 122 (136)
T cd08405 112 ---GLELKHWKDML 122 (136)
T ss_pred ---CchHHHHHHHH
Confidence 22234555554
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.57 E-value=5.4e-15 Score=87.00 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=63.2
Q ss_pred cCCCCcEEEEEEC-C----eEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCR-T----QEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~-~----~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.|.+||||++.+. + ..++|+++++ .||.|||+|.|.+... ...+.|+|||++..+++++||++.+.....
T Consensus 32 ~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~- 110 (135)
T cd08410 32 SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS- 110 (135)
T ss_pred CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccC-
Confidence 5679999999972 2 2468899999 9999999999998652 236999999999888999999988654332
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
++....+|+.+.
T Consensus 111 -~~~~~~~W~~l~ 122 (135)
T cd08410 111 -GPSETNHWRRML 122 (135)
T ss_pred -CchHHHHHHHHH
Confidence 232246777766
No 91
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.56 E-value=3.2e-14 Score=84.00 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=65.1
Q ss_pred cCCCCcEEEEEECC------eEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 10 AGSVDPYVVLTCRT------QEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 10 ~~~~dp~v~v~~~~------~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
.+.+||||++.+.. .+++|++.++ .+|.|||+|.|.+.. ....|.|+||+.+..+++++||++.+++...
T Consensus 33 ~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 33 NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 56789999998831 2468999999 999999999999875 3448999999999899999999999987753
Q ss_pred ccCCCCCCeEEEec
Q 037768 80 FMEGSLPPTAYNVV 93 (111)
Q Consensus 80 ~~~~~~~~~~~~l~ 93 (111)
- ......|+.+.
T Consensus 113 ~--~~~~~hW~~~l 124 (138)
T cd08408 113 G--EEEEEHWNEMK 124 (138)
T ss_pred C--chHHHHHHHHH
Confidence 2 12235677665
No 92
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.55 E-value=7.3e-14 Score=80.88 Aligned_cols=72 Identities=32% Similarity=0.528 Sum_probs=59.7
Q ss_pred cCCCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcCC----CceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 10 AGSVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITGD----VTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 10 ~~~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~~----~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
.+.+||||++.+. ....+|+++++ .+|.|+++|.|..... ...+.+++||++.. ++++||++.++++++
T Consensus 33 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l 111 (123)
T cd04035 33 NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKL 111 (123)
T ss_pred CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccC
Confidence 4678999999872 23579999999 9999999999963332 35899999999887 799999999999999
Q ss_pred ccC
Q 037768 80 FME 82 (111)
Q Consensus 80 ~~~ 82 (111)
..+
T Consensus 112 ~~~ 114 (123)
T cd04035 112 KPN 114 (123)
T ss_pred CCC
Confidence 844
No 93
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.54 E-value=5.3e-14 Score=82.97 Aligned_cols=83 Identities=19% Similarity=0.341 Sum_probs=64.2
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+.+||||++.+.. .+++|++.++ .||.|||+|.|.+.. ....|.|+||+++..+++++||++.+......
T Consensus 32 ~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 32 HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 46689999998732 2468899989 999999999999875 23589999999998889999999999865443
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
.+.+ ...|..+.
T Consensus 112 ~~~~-~~hW~~~~ 123 (137)
T cd08409 112 RGKE-LEHWNDML 123 (137)
T ss_pred CChH-HHHHHHHH
Confidence 2222 35566654
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.54 E-value=4e-14 Score=82.77 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCCCcEEEEEEC--C---eEEEeeeeCC-C-CCcccceEEEEEcCCCc--eEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 11 GSVDPYVVLTCR--T---QEQKSSIGSG-S-GPEWNETFVFTITGDVT--ELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 11 ~~~dp~v~v~~~--~---~~~~T~~~~~-~-~P~w~e~~~f~~~~~~~--~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
+..||||++++. + .+++|++.++ . +|.|||+|.|.+..... .+.+++||++..+++++||++.+..+...
T Consensus 33 ~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~- 111 (135)
T cd08692 33 LTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSS- 111 (135)
T ss_pred CCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccCC-
Confidence 345899999882 1 3468899888 6 58999999999987433 77889999998889999999999987632
Q ss_pred CCCCCCeEEEec
Q 037768 82 EGSLPPTAYNVV 93 (111)
Q Consensus 82 ~~~~~~~~~~l~ 93 (111)
++...+|.+..
T Consensus 112 -~~~~~hW~~m~ 122 (135)
T cd08692 112 -SEAVEQWKDTI 122 (135)
T ss_pred -chhhhhHHHHH
Confidence 22235665544
No 95
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.53 E-value=7.7e-14 Score=81.93 Aligned_cols=81 Identities=21% Similarity=0.418 Sum_probs=63.6
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.|.+||||++.+.. ..++|++.++ .+|.|+|+|.|.+... ...|.|+|||++..+++++||++.+++...
T Consensus 32 ~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~- 110 (134)
T cd08403 32 TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD- 110 (134)
T ss_pred CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC-
Confidence 57799999999832 2468888888 9999999999997652 236899999999999999999999987632
Q ss_pred cCCCCCCeEEEec
Q 037768 81 MEGSLPPTAYNVV 93 (111)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (111)
+.....|+.+.
T Consensus 111 --~~~~~~w~~~~ 121 (134)
T cd08403 111 --GQGREHWNEML 121 (134)
T ss_pred --CchHHHHHHHH
Confidence 22245677665
No 96
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.48 E-value=7.7e-13 Score=72.79 Aligned_cols=83 Identities=36% Similarity=0.599 Sum_probs=69.8
Q ss_pred cCCCCcEEEEEECC-eEEEeeeeCC-CCCcccceEEEEEcC-CCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 10 AGSVDPYVVLTCRT-QEQKSSIGSG-SGPEWNETFVFTITG-DVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-~~~~T~~~~~-~~P~w~e~~~f~~~~-~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
.+.++|||.+.+.. ...+|.+..+ .+|.|++.|.|.+.. ....+.+++|+++..+.+.++|++.+++.++.......
T Consensus 17 ~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~ 96 (102)
T cd00030 17 NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG 96 (102)
T ss_pred CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcC
Confidence 35689999999987 7789999999 999999999999987 56689999999988777899999999999987333345
Q ss_pred CeEEEe
Q 037768 87 PTAYNV 92 (111)
Q Consensus 87 ~~~~~l 92 (111)
..|++|
T Consensus 97 ~~~~~l 102 (102)
T cd00030 97 ELWLPL 102 (102)
T ss_pred cceecC
Confidence 677754
No 97
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1e-13 Score=97.29 Aligned_cols=97 Identities=27% Similarity=0.523 Sum_probs=80.7
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCC-----------CCCCceeEEEEEEC
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDT-----------FSNDDYLGEATISL 76 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~-----------~~~~~~lG~~~~~l 76 (111)
..|++||||.+.+++.+.+|+++-. +||.|+|.|.|+.++....+.+.|||+++ ...|+|+|+..+.+
T Consensus 312 ktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtviev 391 (1283)
T KOG1011|consen 312 KTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEV 391 (1283)
T ss_pred cCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEE
Confidence 4788999999999999999999999 99999999999999988899999999874 23488999999988
Q ss_pred cccccCCCCCCeEEEecc---CCeEeeEEEEEEEE
Q 037768 77 EPLFMEGSLPPTAYNVVK---NQEYCGEIRVGLTF 108 (111)
Q Consensus 77 ~~l~~~~~~~~~~~~l~~---~~~~~G~l~l~~~~ 108 (111)
..+. ++ .+.||.|.+ .....|.|+|.+..
T Consensus 392 rtls--ge-mdvwynlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 392 RTLS--GE-MDVWYNLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred Eecc--cc-hhhhcchhhccchhhccceEEEEEEE
Confidence 7763 44 378999983 34457887777653
No 98
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.46 E-value=2.2e-13 Score=95.64 Aligned_cols=100 Identities=23% Similarity=0.345 Sum_probs=88.2
Q ss_pred ecCCCCcEEEEEECCe-EEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQ-EQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
..|..||||.|.+..+ ..+|.++.+ +.|-|.|+|.|+++...+.+.|.|||++ .++|+.||.+.+.=+++.... ..
T Consensus 22 ~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~-~~ 99 (800)
T KOG2059|consen 22 PSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYP-GK 99 (800)
T ss_pred CCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCC-CC
Confidence 3677899999999765 479999999 9999999999999988889999999999 899999999999988887554 67
Q ss_pred CeEEEec---cCCeEeeEEEEEEEEEe
Q 037768 87 PTAYNVV---KNQEYCGEIRVGLTFTP 110 (111)
Q Consensus 87 ~~~~~l~---~~~~~~G~l~l~~~~~~ 110 (111)
+.|+.|. .+...+|+|+|++.+.+
T Consensus 100 d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 100 DTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ccceeccccCCChhhceeEEEEEEecc
Confidence 8999998 56778999999998764
No 99
>PLN02223 phosphoinositide phospholipase C
Probab=99.46 E-value=1.9e-12 Score=89.76 Aligned_cols=94 Identities=16% Similarity=0.306 Sum_probs=72.4
Q ss_pred CCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECcccccCC
Q 037768 11 GSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFMEG 83 (111)
Q Consensus 11 ~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~ 83 (111)
+.+||||+|.+.+ ..++|.+..+ .||.|+|+|.|.+..++. .|.|+|+|++..++++|+|+..+|+..+..+
T Consensus 433 s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G- 511 (537)
T PLN02223 433 SKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEG- 511 (537)
T ss_pred CCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCC-
Confidence 3468999999843 2457777777 999999999999988776 6899999999888899999999999999853
Q ss_pred CCCCeEEEec-cCCe--EeeEEEEEEEE
Q 037768 84 SLPPTAYNVV-KNQE--YCGEIRVGLTF 108 (111)
Q Consensus 84 ~~~~~~~~l~-~~~~--~~G~l~l~~~~ 108 (111)
-++.+|. ..+. ....|.+.++|
T Consensus 512 ---yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 512 ---IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ---ceeEeccCCCcCCCCCceEEEEEEe
Confidence 2447776 2222 23456666655
No 100
>PLN02270 phospholipase D alpha
Probab=99.43 E-value=3.6e-12 Score=91.64 Aligned_cols=98 Identities=14% Similarity=0.296 Sum_probs=82.8
Q ss_pred CCCCcEEEEEECCeE-EEeeeeCC--CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCC
Q 037768 11 GSVDPYVVLTCRTQE-QKSSIGSG--SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPP 87 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~-~~T~~~~~--~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~ 87 (111)
+.++||+.|.+++.. -+|+++.+ .||.|+|+|.+++......+.|.|.+.+.++ ..+||.+.+|+.++..+.. ..
T Consensus 45 ~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~-i~ 122 (808)
T PLN02270 45 GESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEE-VD 122 (808)
T ss_pred CCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCc-cc
Confidence 457999999998766 59999988 5999999999999988889999999999887 7799999999999986554 58
Q ss_pred eEEEec-cCCe---EeeEEEEEEEEEe
Q 037768 88 TAYNVV-KNQE---YCGEIRVGLTFTP 110 (111)
Q Consensus 88 ~~~~l~-~~~~---~~G~l~l~~~~~~ 110 (111)
.|+++. .+++ ....|+++++|.|
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 123 RWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred cEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 999998 2222 2348999999987
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.42 E-value=3.4e-12 Score=70.43 Aligned_cols=72 Identities=36% Similarity=0.734 Sum_probs=63.3
Q ss_pred CCCCcEEEEEECCe---EEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 11 GSVDPYVVLTCRTQ---EQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 11 ~~~dp~v~v~~~~~---~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
+..+|||++.+... ..+|+...+ .+|.|+++|.|.+... ...|.|++|++...+.+.++|.+.+++.++..+
T Consensus 19 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 19 GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence 46899999999764 689999999 8999999999998876 679999999998877799999999999988644
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=99.40 E-value=5.3e-12 Score=88.89 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=71.9
Q ss_pred CCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECcccccCCCC
Q 037768 13 VDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSL 85 (111)
Q Consensus 13 ~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~ 85 (111)
.||||++.+. ....+|+++.+ .+|.|+++|.|.+..++. .+.|+|||++..+.++++|+..+|+..+..+
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G--- 573 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPG--- 573 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCC---
Confidence 4889999883 24568999999 999999999999887655 6889999998888899999999999999854
Q ss_pred CCeEEEec-cCCeEee--EEEEEEEE
Q 037768 86 PPTAYNVV-KNQEYCG--EIRVGLTF 108 (111)
Q Consensus 86 ~~~~~~l~-~~~~~~G--~l~l~~~~ 108 (111)
-+|++|. ..+...+ .|.+.++|
T Consensus 574 -yR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 574 -IRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred -ceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 2478887 3444434 44444443
No 103
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.39 E-value=1.5e-12 Score=70.13 Aligned_cols=64 Identities=34% Similarity=0.733 Sum_probs=55.3
Q ss_pred cCCCCcEEEEEECC---eEEEeeeeCC-CCCcccceEEEEEcC-CCceEEEEEEeCCCCCCCceeEEEE
Q 037768 10 AGSVDPYVVLTCRT---QEQKSSIGSG-SGPEWNETFVFTITG-DVTELTLKIMDKDTFSNDDYLGEAT 73 (111)
Q Consensus 10 ~~~~dp~v~v~~~~---~~~~T~~~~~-~~P~w~e~~~f~~~~-~~~~l~i~v~~~~~~~~~~~lG~~~ 73 (111)
.+..+||+++.+.. ..++|++..+ .+|.|+++|.|.+.. ....|.|+||+.+..+++++||++.
T Consensus 17 ~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 17 NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 45689999999965 5689999999 999999999999765 3447999999999988899999974
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=90.85 Aligned_cols=102 Identities=26% Similarity=0.521 Sum_probs=87.5
Q ss_pred ecCCCCcEEEEEECCeE-EEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQE-QKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLP 86 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~-~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~ 86 (111)
+.+..|||+++.+.+.. -+|+++++ .||.|||++-..+..-...|.+++||.+....++.+|.+.++|..+.......
T Consensus 455 i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ 534 (1227)
T COG5038 455 INGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKK 534 (1227)
T ss_pred ccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccc
Confidence 46778999999874432 39999999 99999999999998778899999999888889999999999999988665555
Q ss_pred CeEEEeccCCeEeeEEEEEEEEEe
Q 037768 87 PTAYNVVKNQEYCGEIRVGLTFTP 110 (111)
Q Consensus 87 ~~~~~l~~~~~~~G~l~l~~~~~~ 110 (111)
.+.+.+..+.+..|.|...+.|.|
T Consensus 535 ne~~e~~~~~k~vGrL~yDl~ffp 558 (1227)
T COG5038 535 NELYEFLRNTKNVGRLTYDLRFFP 558 (1227)
T ss_pred cceeeeeccCccceEEEEeeeeec
Confidence 667888777888899999999977
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.33 E-value=1.5e-11 Score=71.91 Aligned_cols=71 Identities=31% Similarity=0.403 Sum_probs=60.4
Q ss_pred CCcEEEEEECC---eEEEeeeeCC-CC--CcccceEEEEEcC---------------------C---CceEEEEEEeCCC
Q 037768 13 VDPYVVLTCRT---QEQKSSIGSG-SG--PEWNETFVFTITG---------------------D---VTELTLKIMDKDT 62 (111)
Q Consensus 13 ~dp~v~v~~~~---~~~~T~~~~~-~~--P~w~e~~~f~~~~---------------------~---~~~l~i~v~~~~~ 62 (111)
+||||++.+.. ..++|.+.++ ++ |.||+.|.|++.. . ...|.+++||.+.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999843 4578999999 88 9999999998654 1 2478999999999
Q ss_pred CCCCceeEEEEEECcccccCC
Q 037768 63 FSNDDYLGEATISLEPLFMEG 83 (111)
Q Consensus 63 ~~~~~~lG~~~~~l~~l~~~~ 83 (111)
+++++++|.+++++..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 999999999999999887543
No 106
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.32 E-value=2e-11 Score=85.92 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=71.1
Q ss_pred CCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECcccccCCCC
Q 037768 13 VDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSL 85 (111)
Q Consensus 13 ~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~ 85 (111)
.||||+|.+.+ ...+|++..+ .+|.|+|+|.|.+..++. .|.|+|+|++..++++|+|+..+|+..|..+=
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 69999999832 2368888888 999999999999887766 78999999998888999999999999998532
Q ss_pred CCeEEEec-cCCe--EeeEEEEEEEE
Q 037768 86 PPTAYNVV-KNQE--YCGEIRVGLTF 108 (111)
Q Consensus 86 ~~~~~~l~-~~~~--~~G~l~l~~~~ 108 (111)
+..+|. ..+. ....|.+.++|
T Consensus 574 --R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 574 --HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred --ceEeccCCCcCCCCCCeeEEEEEe
Confidence 236776 2222 23456666665
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.30 E-value=6.5e-11 Score=83.25 Aligned_cols=93 Identities=23% Similarity=0.295 Sum_probs=71.4
Q ss_pred CCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECcccccCCC
Q 037768 12 SVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 12 ~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~ 84 (111)
..||||+|.+. ....+|+++.+ .+|.|+|+|.|.+..++. .+.|+|+|++..+.++++|+..+|+..+..+ -
T Consensus 478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G-y 556 (581)
T PLN02222 478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG-I 556 (581)
T ss_pred CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCc-c
Confidence 36889999983 23468999999 999999999999887665 7899999998878899999999999999843 2
Q ss_pred CCCeEEEec-cCCe--EeeEEEEEEEE
Q 037768 85 LPPTAYNVV-KNQE--YCGEIRVGLTF 108 (111)
Q Consensus 85 ~~~~~~~l~-~~~~--~~G~l~l~~~~ 108 (111)
+..+|. ..+. ....|.+.+.|
T Consensus 557 ---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 557 ---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 236776 2222 23456666654
No 108
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-11 Score=86.09 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=74.0
Q ss_pred CCCCcEEEEEECCe-----EEEeeeeCC--CCCcccceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECcccccC
Q 037768 11 GSVDPYVVLTCRTQ-----EQKSSIGSG--SGPEWNETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFME 82 (111)
Q Consensus 11 ~~~dp~v~v~~~~~-----~~~T~~~~~--~~P~w~e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~ 82 (111)
...||||.|.+.+. ..+|+++.+ -+|.|+|+|.|.+..++. .|.|.|+|.+..++|+|+|+.++|+.+|..+
T Consensus 639 ~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 639 EISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred ccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCc
Confidence 34799999988432 368885554 999999999999998877 6789999999999999999999999999853
Q ss_pred CCCCCeEEEec-cCC--eEeeEEEEEEEEEe
Q 037768 83 GSLPPTAYNVV-KNQ--EYCGEIRVGLTFTP 110 (111)
Q Consensus 83 ~~~~~~~~~l~-~~~--~~~G~l~l~~~~~~ 110 (111)
- +-.+|. ..+ -....|.+.+++.+
T Consensus 719 -y---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 719 -Y---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred -e---eeeeecCCCCccccceeEEEEEEEec
Confidence 2 226776 222 23456777777654
No 109
>PLN02228 Phosphoinositide phospholipase C
Probab=99.24 E-value=1.6e-10 Score=81.09 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=73.4
Q ss_pred CCcEEEEEEC-----CeEEEeeeeCC-CCCcc-cceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECcccccCCC
Q 037768 13 VDPYVVLTCR-----TQEQKSSIGSG-SGPEW-NETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 13 ~dp~v~v~~~-----~~~~~T~~~~~-~~P~w-~e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~ 84 (111)
.||||+|.+. ...++|+++.+ .+|.| +++|.|.+..++- .+.|.|+|++..+.++++|+..+|++.|..+ -
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~G-Y 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSG-V 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCC-e
Confidence 6889999883 23468999888 99999 9999999887665 7889999998878899999999999999743 2
Q ss_pred CCCeEEEec-cCCe--EeeEEEEEEEEEe
Q 037768 85 LPPTAYNVV-KNQE--YCGEIRVGLTFTP 110 (111)
Q Consensus 85 ~~~~~~~l~-~~~~--~~G~l~l~~~~~~ 110 (111)
+..+|. ..+. ....|.+.+.+.+
T Consensus 537 ---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 537 ---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred ---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 336776 2222 2456888887765
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.20 E-value=8e-11 Score=86.80 Aligned_cols=77 Identities=30% Similarity=0.419 Sum_probs=67.2
Q ss_pred EecCCCCcEEEEEECCe-EEEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECcccccCCC
Q 037768 8 ILAGSVDPYVVLTCRTQ-EQKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 8 ~~~~~~dp~v~v~~~~~-~~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~ 84 (111)
...|.+||||++.+.++ .++|+++++ +||.|||++..++.+. ...+.+.++|++...+++.+|.+.++|..+..+++
T Consensus 1056 d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1056 DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCc
Confidence 34777999999999665 689999999 9999999999999864 45889999999999999999999999999875543
No 111
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.14 E-value=2.9e-10 Score=80.41 Aligned_cols=101 Identities=24% Similarity=0.482 Sum_probs=78.2
Q ss_pred ecCCCCcEEEEEECCeE----EEeeeeCC-CCCcccceEEEEEcCC---------------Cc-eEEEEEEeC-CCCCCC
Q 037768 9 LAGSVDPYVVLTCRTQE----QKSSIGSG-SGPEWNETFVFTITGD---------------VT-ELTLKIMDK-DTFSND 66 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~----~~T~~~~~-~~P~w~e~~~f~~~~~---------------~~-~l~i~v~~~-~~~~~~ 66 (111)
+.+.+|||+++...+.. .+|.+.+. .+|.|+|.|.|.+..+ .. .+.+.+|++ +...++
T Consensus 147 ~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~ 226 (800)
T KOG2059|consen 147 INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIND 226 (800)
T ss_pred eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhh
Confidence 46679999999875433 48999999 9999999999988654 22 788999994 445569
Q ss_pred ceeEEEEEECcccccCCCCCCeEEEecc--------CCeEeeEEEEEEEEEe
Q 037768 67 DYLGEATISLEPLFMEGSLPPTAYNVVK--------NQEYCGEIRVGLTFTP 110 (111)
Q Consensus 67 ~~lG~~~~~l~~l~~~~~~~~~~~~l~~--------~~~~~G~l~l~~~~~~ 110 (111)
.|+|++.+++..+.. ......||.|.. .+..-|.+++.+.|+.
T Consensus 227 ~FlGevrv~v~~~~~-~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 227 VFLGEVRVPVDVLRQ-KSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hhceeEEeehhhhhh-ccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999999999998873 334578999971 1334688999999864
No 112
>PLN02352 phospholipase D epsilon
Probab=99.03 E-value=3.2e-09 Score=76.54 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=72.7
Q ss_pred CcEEEEEECCeEE-EeeeeCC-CCCcccceEEEEEcCCC-ceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCCeEE
Q 037768 14 DPYVVLTCRTQEQ-KSSIGSG-SGPEWNETFVFTITGDV-TELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPPTAY 90 (111)
Q Consensus 14 dp~v~v~~~~~~~-~T~~~~~-~~P~w~e~~~f~~~~~~-~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~~~~ 90 (111)
+||+.|.+++... +| .+ .||.|+|+|.+++.... ..+.|.|.+ ...+||.+.+|+.++..+......|+
T Consensus 37 ~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~ 108 (758)
T PLN02352 37 ATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFF 108 (758)
T ss_pred CceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEE
Confidence 9999999987653 66 66 89999999999998776 589999977 27899999999999987655468999
Q ss_pred Eec-cCCeE-e-eEEEEEEEEEe
Q 037768 91 NVV-KNQEY-C-GEIRVGLTFTP 110 (111)
Q Consensus 91 ~l~-~~~~~-~-G~l~l~~~~~~ 110 (111)
++. .++++ . ..|+++++|.|
T Consensus 109 ~~~~~~~~p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 109 PLIMENGKPNPELKLRFMLWFRP 131 (758)
T ss_pred EcccCCCCCCCCCEEEEEEEEEE
Confidence 998 22221 2 58999999987
No 113
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.1e-09 Score=73.74 Aligned_cols=69 Identities=32% Similarity=0.587 Sum_probs=56.5
Q ss_pred cCCCCcEEEEEEC--C---eEEEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCCCCCceeEEEEEECcc
Q 037768 10 AGSVDPYVVLTCR--T---QEQKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTFSNDDYLGEATISLEP 78 (111)
Q Consensus 10 ~~~~dp~v~v~~~--~---~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~~~~~~lG~~~~~l~~ 78 (111)
.+..||||++.+- . .+.+|.+.++ .||+|||+|.|.+... ...+.|+||+++.++++++||++.+....
T Consensus 316 ~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 316 GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 4567899999872 2 2368889999 9999999999988862 23789999999999999999998886554
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.94 E-value=9.9e-09 Score=74.16 Aligned_cols=71 Identities=23% Similarity=0.438 Sum_probs=59.5
Q ss_pred CCCCcEEEEEECC-----eE-EEeeeeCC-CCCccc-ceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 11 GSVDPYVVLTCRT-----QE-QKSSIGSG-SGPEWN-ETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 11 ~~~dp~v~v~~~~-----~~-~~T~~~~~-~~P~w~-e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
|.+.|||.|.+.+ .. ++|.+..+ +||+|+ +.|.|++.+++- .|.|.|++.+.++...|||++.+|+..+..
T Consensus 1083 ~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1083 SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhc
Confidence 3467999998832 23 45567777 999999 999999998765 789999999999988899999999998874
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-09 Score=78.04 Aligned_cols=81 Identities=27% Similarity=0.487 Sum_probs=66.3
Q ss_pred EeeeeCC-CCCcccceEEEEEcCCC-ceEEEEEEeCCC---------------------------------CC---CCce
Q 037768 27 KSSIGSG-SGPEWNETFVFTITGDV-TELTLKIMDKDT---------------------------------FS---NDDY 68 (111)
Q Consensus 27 ~T~~~~~-~~P~w~e~~~f~~~~~~-~~l~i~v~~~~~---------------------------------~~---~~~~ 68 (111)
-|.+.+. +||.|+|.|.|++.+-. ..+++-+||++. .+ .|+|
T Consensus 180 atsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDF 259 (1103)
T KOG1328|consen 180 ATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDF 259 (1103)
T ss_pred hcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccc
Confidence 4677778 99999999999998844 489999999863 12 2789
Q ss_pred eEEEEEECcccccCCCCCCeEEEec---cCCeEeeEEEEEEEEE
Q 037768 69 LGEATISLEPLFMEGSLPPTAYNVV---KNQEYCGEIRVGLTFT 109 (111)
Q Consensus 69 lG~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~l~l~~~~~ 109 (111)
+|++.+|+.++...+ .++|+.|. ...+.+|.++|.+++.
T Consensus 260 LGciNipl~EiP~~G--ld~WFkLepRS~~S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 260 LGCINIPLAEIPPDG--LDQWFKLEPRSDKSKVQGQVKLKLWLS 301 (1103)
T ss_pred ccccccchhcCCcch--HHHHhccCcccccccccceEEEEEEEe
Confidence 999999999997543 58999998 3467799999999875
No 116
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=71.11 Aligned_cols=97 Identities=25% Similarity=0.510 Sum_probs=78.0
Q ss_pred CCCCcEEEEEECCeEEEeeeeCC-CCCccc-ceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccccC---
Q 037768 11 GSVDPYVVLTCRTQEQKSSIGSG-SGPEWN-ETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFME--- 82 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~-e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~--- 82 (111)
...|.||.+.+++..++|.+..+ +||.|| +.|.|++.+ .+..|.|.+.|++..+.++-||.+.++++.+..+
T Consensus 23 d~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aa 102 (1169)
T KOG1031|consen 23 DLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAA 102 (1169)
T ss_pred ccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHH
Confidence 34689999999999999999999 999999 789999987 3458999999999999999999999999988432
Q ss_pred ------CCCCCeEEEeccC-CeEeeEEEEEEE
Q 037768 83 ------GSLPPTAYNVVKN-QEYCGEIRVGLT 107 (111)
Q Consensus 83 ------~~~~~~~~~l~~~-~~~~G~l~l~~~ 107 (111)
+.....|+++... ...+|+|.+-+.
T Consensus 103 qavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 103 QAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred hhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 2345689998722 234677765543
No 117
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.82 E-value=2.6e-08 Score=55.72 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=53.5
Q ss_pred ecCCCCcEEEEEECCe-EEEeeeeCCCCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 9 LAGSVDPYVVLTCRTQ-EQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-~~~T~~~~~~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
+.+.++|||.+.+++. ..+|++. .||.|+|+|.|.+. ....+.+.+||+... ..--+|..=+.++++.
T Consensus 19 ~~~~~etyV~IKved~~kaRTr~s--rnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 19 FSKRPETYVSIKVEDVERARTKPS--RNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVPVGLLWLRLSDIA 87 (109)
T ss_pred hccCCCcEEEEEECCEEEEeccCC--CCCcccceEEEEec-CCcEEEEEEEeCCCC-eecceeeehhhHHHHH
Confidence 6778999999999877 5666654 79999999999995 577999999998643 2445777767777764
No 118
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.80 E-value=2.6e-09 Score=76.28 Aligned_cols=72 Identities=31% Similarity=0.517 Sum_probs=62.1
Q ss_pred ecCCCCcEEEEEECCe-------EEEeeeeCC-CCCcccceEEEEEcCCC-----ceEEEEEEeCCCCCCCceeEEEEEE
Q 037768 9 LAGSVDPYVVLTCRTQ-------EQKSSIGSG-SGPEWNETFVFTITGDV-----TELTLKIMDKDTFSNDDYLGEATIS 75 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~-------~~~T~~~~~-~~P~w~e~~~f~~~~~~-----~~l~i~v~~~~~~~~~~~lG~~~~~ 75 (111)
-+|.+||||+|.+... .++|+++.+ +||+|+|.|.|.++... -.+.|+|+|++-.+.++|-|++.+.
T Consensus 964 ~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~ 1043 (1103)
T KOG1328|consen 964 SNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLE 1043 (1103)
T ss_pred CCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHh
Confidence 3788999999998643 369999999 99999999999998732 2689999999988889999999999
Q ss_pred Ccccc
Q 037768 76 LEPLF 80 (111)
Q Consensus 76 l~~l~ 80 (111)
++++.
T Consensus 1044 Lg~vp 1048 (1103)
T KOG1328|consen 1044 LGDVP 1048 (1103)
T ss_pred hCCCC
Confidence 98884
No 119
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.56 E-value=4.9e-07 Score=52.31 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=63.3
Q ss_pred CCcEEEEEE----CCeEEEeeeeCC-CCCcccceEEEEEcC----------------CCceEEEEEEeCCCC--------
Q 037768 13 VDPYVVLTC----RTQEQKSSIGSG-SGPEWNETFVFTITG----------------DVTELTLKIMDKDTF-------- 63 (111)
Q Consensus 13 ~dp~v~v~~----~~~~~~T~~~~~-~~P~w~e~~~f~~~~----------------~~~~l~i~v~~~~~~-------- 63 (111)
-++||++.+ .++.++|+++.+ =-|.|+-+++|+++- ....+.+++|+....
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 388999985 345678999999 999999999998761 123789999997532
Q ss_pred --CCCceeEEEEEECcccccCCCCCCeEEEe
Q 037768 64 --SNDDYLGEATISLEPLFMEGSLPPTAYNV 92 (111)
Q Consensus 64 --~~~~~lG~~~~~l~~l~~~~~~~~~~~~l 92 (111)
.+|-++|.+.+|+.+|.........||++
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 34558999999999998777777899974
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.45 E-value=1.1e-07 Score=69.86 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=61.9
Q ss_pred ecCCCCcEEEEEECCeEE--EeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 9 LAGSVDPYVVLTCRTQEQ--KSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~--~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
..|++|||+.+.++++.. +.+.+.+ ++|+|.+.|.+....+ +..+.++||+++..++++.+|+..+.+++-
T Consensus 630 ~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 630 GNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENR 704 (1105)
T ss_pred CCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhc
Confidence 378899999999998874 6778888 9999999999987765 458899999999999999999999988864
No 121
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.32 E-value=5.9e-07 Score=67.38 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=66.1
Q ss_pred CCCcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEE-EcC---CCceEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 12 SVDPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFT-ITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 12 ~~dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~-~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
.+||||+.++- ..+++|+++++ .+|.|||...+. .+. ..+.|.++||+.+....+.++|.+.++|.++..
T Consensus 1544 ~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l 1623 (1639)
T KOG0905|consen 1544 DPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDL 1623 (1639)
T ss_pred CCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcch
Confidence 47999999983 23468999999 999999998876 332 346899999999988889999999999998875
Q ss_pred CCCCCCeEEEec
Q 037768 82 EGSLPPTAYNVV 93 (111)
Q Consensus 82 ~~~~~~~~~~l~ 93 (111)
..+ ...||.|.
T Consensus 1624 ~kE-~~~Wy~lg 1634 (1639)
T KOG0905|consen 1624 LKE-SVGWYNLG 1634 (1639)
T ss_pred hhh-hcceeecc
Confidence 554 35899985
No 122
>PLN02964 phosphatidylserine decarboxylase
Probab=98.21 E-value=2.6e-06 Score=61.31 Aligned_cols=69 Identities=12% Similarity=0.292 Sum_probs=59.4
Q ss_pred CCcEEE-EEECCeEEEeeeeCC-CCCcccceEEEEEcCCCc-eEEEEEEeCCCCCCCceeEEEEEECccccc
Q 037768 13 VDPYVV-LTCRTQEQKSSIGSG-SGPEWNETFVFTITGDVT-ELTLKIMDKDTFSNDDYLGEATISLEPLFM 81 (111)
Q Consensus 13 ~dp~v~-v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~~~-~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~ 81 (111)
.|+|.. +++|.+.++|.+.++ .+|+||+...|.+...+. ...+.||+.+++++++++|.+.+++.++..
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccH
Confidence 477665 567999999999999 999999999999887444 669999999999999999999998877753
No 123
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=98.15 E-value=9.1e-05 Score=44.49 Aligned_cols=93 Identities=17% Similarity=0.318 Sum_probs=69.4
Q ss_pred EEECCeEEEeeeeCC-CCCcccceEEEEEcCC--------------CceEEEEEEeCCCCCCCceeEEEEEECcccccCC
Q 037768 19 LTCRTQEQKSSIGSG-SGPEWNETFVFTITGD--------------VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEG 83 (111)
Q Consensus 19 v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~~--------------~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~ 83 (111)
+.++++.++|+.+.. .+|.|+|.|-|++... ...+++.+...+..+...++|...+....+...+
T Consensus 40 l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~ 119 (156)
T PF15627_consen 40 LHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG 119 (156)
T ss_pred EEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence 345889999999999 9999999999998753 2367888887777766799999999988887555
Q ss_pred CCC-CeEEEec-cC---CeEeeEEEEEEEEEeC
Q 037768 84 SLP-PTAYNVV-KN---QEYCGEIRVGLTFTPE 111 (111)
Q Consensus 84 ~~~-~~~~~l~-~~---~~~~G~l~l~~~~~~~ 111 (111)
... .....|. .. ..+.|.|.+++++.|.
T Consensus 120 ~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 120 NGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 431 1223333 12 3468999999998873
No 124
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.13 E-value=1.8e-06 Score=63.71 Aligned_cols=95 Identities=14% Similarity=0.252 Sum_probs=73.7
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEE---cC-------CCceEEEEEEeCCCCCCCceeEEEEEECcc
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTI---TG-------DVTELTLKIMDKDTFSNDDYLGEATISLEP 78 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~---~~-------~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~ 78 (111)
.+.+|||+.+.+.++.+.|.++.+ ++|.|+++..|.- .. ....+.+++||.+..+.++++|+......-
T Consensus 224 ~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V 303 (1105)
T KOG1326|consen 224 DDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYV 303 (1105)
T ss_pred ccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEE
Confidence 456899999999999999999999 9999999998852 11 234778999999999999999998765444
Q ss_pred cccCCCCCCeEEEeccCCeEeeEEEEEE
Q 037768 79 LFMEGSLPPTAYNVVKNQEYCGEIRVGL 106 (111)
Q Consensus 79 l~~~~~~~~~~~~l~~~~~~~G~l~l~~ 106 (111)
... .....|+++..++...|.+.++.
T Consensus 304 ~~~--~p~lkw~p~~rg~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 304 MVQ--CPALKWVPTMRGAFLDGDVLIAA 329 (1105)
T ss_pred Eec--CCccceEEeecccccccchhHHH
Confidence 332 33568999887766667665543
No 125
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.93 E-value=0.00037 Score=38.09 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=54.5
Q ss_pred EEEecCCCCcEEEEEECCeEE-EeeeeCCCCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 6 FFILAGSVDPYVVLTCRTQEQ-KSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 6 ~~~~~~~~dp~v~v~~~~~~~-~T~~~~~~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
.+.+.|..+..+++.+.+... +|......+..|++.|.+++. ..+.|.|.||-++- .++.|-..+.|++.
T Consensus 2 ~~~~~~~~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 2 EVRLMGCSEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred eeEEecccceEEEEEEcCeEEeeccccccccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 355778889999999987654 555544488999999999987 56789999998764 56778888888873
No 126
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.73 E-value=0.00086 Score=45.27 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=72.5
Q ss_pred CcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC--------CCceEEEEEEeCC-CCCCCceeEEEEEECccc---c
Q 037768 14 DPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG--------DVTELTLKIMDKD-TFSNDDYLGEATISLEPL---F 80 (111)
Q Consensus 14 dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~--------~~~~l~i~v~~~~-~~~~~~~lG~~~~~l~~l---~ 80 (111)
.-.+..++.+....|..+.+ ..|.|+..+.|++.. ....|++++|.-+ ..++.+.+|.+.++|... .
T Consensus 19 ~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~ 98 (340)
T PF12416_consen 19 PIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQ 98 (340)
T ss_pred cEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccccc
Confidence 34555677888889998888 999999999999864 2348999999977 566788999999999987 3
Q ss_pred cC-CCCCCeEEEeccC----CeEeeEEEEEEEEE
Q 037768 81 ME-GSLPPTAYNVVKN----QEYCGEIRVGLTFT 109 (111)
Q Consensus 81 ~~-~~~~~~~~~l~~~----~~~~G~l~l~~~~~ 109 (111)
.+ ......||+|... .+.+-+|.+.+...
T Consensus 99 ~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie 132 (340)
T PF12416_consen 99 EKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIE 132 (340)
T ss_pred ccccccCCCeeEccccccccccCCccEEEEEEEe
Confidence 22 2457899999822 22346777777654
No 127
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.69 E-value=8.6e-06 Score=44.23 Aligned_cols=54 Identities=35% Similarity=0.455 Sum_probs=44.6
Q ss_pred EEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 25 EQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 25 ~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.++|.+.++ .||.|.|+|.|.+.- ..-.|.+.+++ ...+.+.||.+.+.++++-
T Consensus 36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS 93 (103)
T ss_pred cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCC
Confidence 468889999 999999999998765 23378888988 4567899999999999874
No 128
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.66 E-value=9.4e-05 Score=52.03 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=57.1
Q ss_pred EEecCCCCcEEEEEE--CCe----EEEeeeeCC-CCCcccceEEEEEcC-----CCceEEEEEEeCCCCCCCceeEEEEE
Q 037768 7 FILAGSVDPYVVLTC--RTQ----EQKSSIGSG-SGPEWNETFVFTITG-----DVTELTLKIMDKDTFSNDDYLGEATI 74 (111)
Q Consensus 7 ~~~~~~~dp~v~v~~--~~~----~~~T~~~~~-~~P~w~e~~~f~~~~-----~~~~l~i~v~~~~~~~~~~~lG~~~~ 74 (111)
..+++++|||..+.- +.. .++|.++++ ++|.|.. |...... ....+.+.+|+.+..++++++|++..
T Consensus 151 kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~t 229 (529)
T KOG1327|consen 151 KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQT 229 (529)
T ss_pred ccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecc
Confidence 356888999999864 222 268999999 9999954 4444322 34688999999999998999999999
Q ss_pred ECccccc
Q 037768 75 SLEPLFM 81 (111)
Q Consensus 75 ~l~~l~~ 81 (111)
++..+..
T Consensus 230 t~~~~~~ 236 (529)
T KOG1327|consen 230 TLSELQE 236 (529)
T ss_pred cHHHhcc
Confidence 9888864
No 129
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00018 Score=52.07 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=62.7
Q ss_pred cCCCCcEEEEEE-CC------eEEEeeeeCC-CCCcccceEEEEEcCC---Cc-eEEEEEEeCCCCCCCceeEEEEEECc
Q 037768 10 AGSVDPYVVLTC-RT------QEQKSSIGSG-SGPEWNETFVFTITGD---VT-ELTLKIMDKDTFSNDDYLGEATISLE 77 (111)
Q Consensus 10 ~~~~dp~v~v~~-~~------~~~~T~~~~~-~~P~w~e~~~f~~~~~---~~-~l~i~v~~~~~~~~~~~lG~~~~~l~ 77 (111)
.|.--||+.+.+ |. .++.|+...+ =.|.+||+|.|.+.+. +. .|.+.|.|.--..-|..+|-+.++|.
T Consensus 1142 sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~ 1221 (1283)
T KOG1011|consen 1142 SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLR 1221 (1283)
T ss_pred ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehh
Confidence 455579999987 21 1246677777 7899999999999873 22 78888877654455789999999999
Q ss_pred ccccCCCCCCeEEEec
Q 037768 78 PLFMEGSLPPTAYNVV 93 (111)
Q Consensus 78 ~l~~~~~~~~~~~~l~ 93 (111)
++...+. ...|++|.
T Consensus 1222 ~va~kGS-~a~W~pLg 1236 (1283)
T KOG1011|consen 1222 SVADKGS-CACWVPLG 1236 (1283)
T ss_pred hHhhcCc-eeEeeecc
Confidence 9986554 57899986
No 130
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00021 Score=47.55 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=52.2
Q ss_pred cCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcCCC---ceEEEEEEeCCCCCCCceeEEEEEE
Q 037768 10 AGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITGDV---TELTLKIMDKDTFSNDDYLGEATIS 75 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~~~---~~l~i~v~~~~~~~~~~~lG~~~~~ 75 (111)
.|.+|||+...+.. .+.+|.+.++ .+|.|+++|.+.+.+.. ..+.|.+|+.+..+..+++|-....
T Consensus 251 ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 251 NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLG 325 (362)
T ss_pred CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccc
Confidence 67799999998742 2358889999 99999999999988743 3788999998876567777775553
No 131
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.22 E-value=0.011 Score=34.77 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=51.2
Q ss_pred CCCcccceEEEEEcC---------CCceEEEEEEeCCCCCCCceeEEEEEECcccccCC-CCCCeEEEeccCCeEeeEEE
Q 037768 34 SGPEWNETFVFTITG---------DVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEG-SLPPTAYNVVKNQEYCGEIR 103 (111)
Q Consensus 34 ~~P~w~e~~~f~~~~---------~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~-~~~~~~~~l~~~~~~~G~l~ 103 (111)
..-.|++.|.+.+.- ....+.|.|+.....++...+|.+.+.|++..... .....-++|.........|.
T Consensus 50 ~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~ 129 (143)
T PF10358_consen 50 GKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLS 129 (143)
T ss_pred cEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEE
Confidence 667999999987542 12368888888754343368999999999997543 22233345544435567777
Q ss_pred EEEEEEe
Q 037768 104 VGLTFTP 110 (111)
Q Consensus 104 l~~~~~~ 110 (111)
+++.+.+
T Consensus 130 isi~~~~ 136 (143)
T PF10358_consen 130 ISISLSE 136 (143)
T ss_pred EEEEEEE
Confidence 7777653
No 132
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=4.7e-05 Score=50.51 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=70.6
Q ss_pred EecCCCCcEEEEEECC-----eEEEeeeeCC-CCCcccceEEEEEcC----CCceEEEEEEeCCCCCCCceeEEEEEECc
Q 037768 8 ILAGSVDPYVVLTCRT-----QEQKSSIGSG-SGPEWNETFVFTITG----DVTELTLKIMDKDTFSNDDYLGEATISLE 77 (111)
Q Consensus 8 ~~~~~~dp~v~v~~~~-----~~~~T~~~~~-~~P~w~e~~~f~~~~----~~~~l~i~v~~~~~~~~~~~lG~~~~~l~ 77 (111)
++.+..|||+...+.. .+.+|++..+ .||.|+++.....-. ....+.+.+.+++.+..+++.|+..+++.
T Consensus 109 ~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lk 188 (362)
T KOG1013|consen 109 DINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLK 188 (362)
T ss_pred hhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhh
Confidence 4577889999988743 2368889999 999999887766332 12367788899999988999999998888
Q ss_pred ccccCCC-CCCeEEEec--------cCCeEeeEEEEEEEE
Q 037768 78 PLFMEGS-LPPTAYNVV--------KNQEYCGEIRVGLTF 108 (111)
Q Consensus 78 ~l~~~~~-~~~~~~~l~--------~~~~~~G~l~l~~~~ 108 (111)
.+..... ....|+.-. ..-+.+|.|.+++.|
T Consensus 189 Kl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~ 228 (362)
T KOG1013|consen 189 KLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAY 228 (362)
T ss_pred ccChhhcchhhhhhhccCCcccccccchhhccceeeeecc
Confidence 7754322 122332211 112457888888876
No 133
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.13 E-value=0.0066 Score=36.78 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=50.0
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeeCC-CCCcccceEEEEEcC---C-CceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 11 GSVDPYVVLTC--RTQE----QKSSIGSG-SGPEWNETFVFTITG---D-VTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 11 ~~~dp~v~v~~--~~~~----~~T~~~~~-~~P~w~e~~~f~~~~---~-~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
..++-||.+.+ +++. .+|....- ..+.|||...|++.- + ...|.|++|+....++...+|.+.++|=+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 44677888866 3332 35555555 778999999998765 2 338999999977655678999999987764
No 134
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.00021 Score=48.24 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=66.5
Q ss_pred CCCcEEEEEECCe-----EEEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEe-CCCCCCCceeEEEEEECcccccCCC
Q 037768 12 SVDPYVVLTCRTQ-----EQKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMD-KDTFSNDDYLGEATISLEPLFMEGS 84 (111)
Q Consensus 12 ~~dp~v~v~~~~~-----~~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~-~~~~~~~~~lG~~~~~l~~l~~~~~ 84 (111)
.+.|||+|++-.. +.+|+...+ .+|.+-....|.-.++...|.+.+|. ...+-+..|+|.+++-++++.....
T Consensus 290 ~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~ 369 (405)
T KOG2060|consen 290 LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSS 369 (405)
T ss_pred ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccc
Confidence 5799999998322 247888888 88888888888877778899999996 4566678899999999999986665
Q ss_pred CCCeEEEec
Q 037768 85 LPPTAYNVV 93 (111)
Q Consensus 85 ~~~~~~~l~ 93 (111)
....||+|.
T Consensus 370 ~~igwyKlf 378 (405)
T KOG2060|consen 370 PVIGWYKLF 378 (405)
T ss_pred cceeeeecc
Confidence 668999997
No 135
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.04 E-value=0.0022 Score=44.21 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=65.2
Q ss_pred CcEEEEEEC-----CeEEEeeeeCC-CCCcccceEEEEEcCC------------CceEEEEEEeCCCC-CCCceeEEEEE
Q 037768 14 DPYVVLTCR-----TQEQKSSIGSG-SGPEWNETFVFTITGD------------VTELTLKIMDKDTF-SNDDYLGEATI 74 (111)
Q Consensus 14 dp~v~v~~~-----~~~~~T~~~~~-~~P~w~e~~~f~~~~~------------~~~l~i~v~~~~~~-~~~~~lG~~~~ 74 (111)
|-|+++.+. .++.+|.+++. .+|.|+|.|-+.+..+ ..-+.|++|++..+ ..|.++|.+.+
T Consensus 389 d~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~ni 468 (523)
T KOG3837|consen 389 DQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNI 468 (523)
T ss_pred HhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeee
Confidence 557776652 23458899999 9999999999988751 23688999998764 45789999999
Q ss_pred ECcccccCCCCCCeEEEeccC-CeEeeEEEEEEE
Q 037768 75 SLEPLFMEGSLPPTAYNVVKN-QEYCGEIRVGLT 107 (111)
Q Consensus 75 ~l~~l~~~~~~~~~~~~l~~~-~~~~G~l~l~~~ 107 (111)
.+..|....++ ...++|..+ ....|.|.+.+.
T Consensus 469 kle~Len~cei-~e~~~l~DGRK~vGGkLevKvR 501 (523)
T KOG3837|consen 469 KLEILENMCEI-CEYLPLKDGRKAVGGKLEVKVR 501 (523)
T ss_pred eehhhhcccch-hhceeccccccccCCeeEEEEE
Confidence 99888644443 345777633 223566555544
No 136
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.25 E-value=0.0087 Score=44.96 Aligned_cols=68 Identities=19% Similarity=0.387 Sum_probs=51.2
Q ss_pred cCCCCcEEEEEECC-------eEEEeeeeCC--CCCccc-ceEEEE-EcCCC-ceEEEEEEeCCCCCCCceeEEEEEECc
Q 037768 10 AGSVDPYVVLTCRT-------QEQKSSIGSG--SGPEWN-ETFVFT-ITGDV-TELTLKIMDKDTFSNDDYLGEATISLE 77 (111)
Q Consensus 10 ~~~~dp~v~v~~~~-------~~~~T~~~~~--~~P~w~-e~~~f~-~~~~~-~~l~i~v~~~~~~~~~~~lG~~~~~l~ 77 (111)
..+...||.|.+-+ ..++|+++.+ .||.|+ +.|.|. +--++ ..|.|.||+++ .+++|+=-+|++
T Consensus 717 drkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK~ig~RIlpvd 792 (1189)
T KOG1265|consen 717 DRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GKFIGQRILPVD 792 (1189)
T ss_pred ccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC----Cceeeeeccchh
Confidence 44567899998732 3467887776 999999 467776 33344 38999999986 689999999999
Q ss_pred cccc
Q 037768 78 PLFM 81 (111)
Q Consensus 78 ~l~~ 81 (111)
-+..
T Consensus 793 ~l~~ 796 (1189)
T KOG1265|consen 793 GLNA 796 (1189)
T ss_pred cccC
Confidence 8864
No 137
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.24 E-value=0.04 Score=31.22 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=47.0
Q ss_pred EEEEEEC-CeEEEeeeeCCCCCcccceEEEEEcCC--------CceEEEEEEeCCCCCCCceeEEEEEECcccccCCC-C
Q 037768 16 YVVLTCR-TQEQKSSIGSGSGPEWNETFVFTITGD--------VTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGS-L 85 (111)
Q Consensus 16 ~v~v~~~-~~~~~T~~~~~~~P~w~e~~~f~~~~~--------~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~-~ 85 (111)
||.+.+. -+.+.|.++.+.+|.++-+..|.+... ...+.++++.--. .....+|.+.+++.++..... .
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCce
Confidence 5666664 345677777779999999999888763 3588899987543 237899999999999974433 2
Q ss_pred CCeEEEec-cCCeEeeEEEEEEEE
Q 037768 86 PPTAYNVV-KNQEYCGEIRVGLTF 108 (111)
Q Consensus 86 ~~~~~~l~-~~~~~~G~l~l~~~~ 108 (111)
.-....|. .++..-|.|...+++
T Consensus 81 i~~~~~l~g~~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGEDFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS-TSEEEEEEEEE
T ss_pred EEEEEEEeccCCCeEEEEEEEEEe
Confidence 22333444 344466777766654
No 138
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.07 E-value=0.14 Score=30.75 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=44.5
Q ss_pred CcEEEEEE--CCeE----EEeeeeCC-CCCcccceEEEEEcC---C-CceEEEEEEeCCCCC--CCceeEEEEEECccc
Q 037768 14 DPYVVLTC--RTQE----QKSSIGSG-SGPEWNETFVFTITG---D-VTELTLKIMDKDTFS--NDDYLGEATISLEPL 79 (111)
Q Consensus 14 dp~v~v~~--~~~~----~~T~~~~~-~~P~w~e~~~f~~~~---~-~~~l~i~v~~~~~~~--~~~~lG~~~~~l~~l 79 (111)
+-|+.+.+ +++. ..|..... .++.|+|...|++.- + +..|.|++|+....+ .+..+|.+.+++=+.
T Consensus 29 ~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 29 KLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 44555544 3332 24444444 678999999998654 2 348999999865443 468999999988764
No 139
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.72 E-value=0.18 Score=31.14 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=33.6
Q ss_pred EEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCCC-CC--CceeEEEEEECcc
Q 037768 26 QKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDTF-SN--DDYLGEATISLEP 78 (111)
Q Consensus 26 ~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~~-~~--~~~lG~~~~~l~~ 78 (111)
+.|.+..+ .+|.|+|++.+.++.. ...|.|++++.... ++ ...+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 57778888 9999999999999873 33788999885321 11 2799999999987
No 140
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=95.49 E-value=0.3 Score=29.89 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=48.1
Q ss_pred CcEEEEEECCeE-EEeeeeCC---CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 14 DPYVVLTCRTQE-QKSSIGSG---SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 14 dp~v~v~~~~~~-~~T~~~~~---~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.-|+++.+.++. .+|....- -.-.|++.|.+.+..-...|.+++|.... ..+.+|+++.+|+-...
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 447888776654 34433322 33467899999988767799999999876 55899999999877653
No 141
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.08 E-value=0.43 Score=29.37 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=44.0
Q ss_pred CCcEEEEEE--CCeE----EEeeeeCC-CCCcccceEEEEEcC---C-CceEEEEEEeCCCCC----------------C
Q 037768 13 VDPYVVLTC--RTQE----QKSSIGSG-SGPEWNETFVFTITG---D-VTELTLKIMDKDTFS----------------N 65 (111)
Q Consensus 13 ~dp~v~v~~--~~~~----~~T~~~~~-~~P~w~e~~~f~~~~---~-~~~l~i~v~~~~~~~----------------~ 65 (111)
.+-||.+.+ +++. ..|..... ..+.|+|.+.|++.- + +..|.|.+|+..... .
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~ 106 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD 106 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence 344666544 4443 35555555 779999999998654 2 338999999854321 2
Q ss_pred CceeEEEEEECccc
Q 037768 66 DDYLGEATISLEPL 79 (111)
Q Consensus 66 ~~~lG~~~~~l~~l 79 (111)
+..+|.+.++|=+.
T Consensus 107 ~~~ig~~n~~LFd~ 120 (173)
T cd08693 107 DNPIAWVNTMVFDY 120 (173)
T ss_pred ceEEEEEeEEEEcc
Confidence 46899988887664
No 142
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=94.84 E-value=0.82 Score=31.44 Aligned_cols=94 Identities=6% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCcEEEEEECCeEEEeeeeCC-CCC--cccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcc-cccCCCCCCe
Q 037768 13 VDPYVVLTCRTQEQKSSIGSG-SGP--EWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEP-LFMEGSLPPT 88 (111)
Q Consensus 13 ~dp~v~v~~~~~~~~T~~~~~-~~P--~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~-l~~~~~~~~~ 88 (111)
...|+.++.+....+|..+.. ..- .-++.....++--+..|.+.+|-..-.+ ..-+|...+.++. +....-....
T Consensus 74 khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvk-k~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTK-KVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccc-eeEEEEEEecccHHHHhccCCccc
Confidence 456777777877777754443 222 3334444445544568899998876544 6789999998874 4444444579
Q ss_pred EEEeccCCeEeeEEEEEEE
Q 037768 89 AYNVVKNQEYCGEIRVGLT 107 (111)
Q Consensus 89 ~~~l~~~~~~~G~l~l~~~ 107 (111)
||-+.+++...+.|.|++.
T Consensus 153 Wy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 153 WFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred eEEEecCCceeeeEEEEeh
Confidence 9999988888899998874
No 143
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.81 E-value=0.57 Score=29.47 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=39.5
Q ss_pred EEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCC----CCCCceeEEEEEECc
Q 037768 25 EQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDT----FSNDDYLGEATISLE 77 (111)
Q Consensus 25 ~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~----~~~~~~lG~~~~~l~ 77 (111)
.++|.+... .+|.|+|++.+.++. ....|.|++++... ......+|-+-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 368888888 999999999999886 34478888877431 122356888888875
No 144
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.61 E-value=0.29 Score=30.62 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=39.5
Q ss_pred EEEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCCCC-CC-CceeEEEEEECcc
Q 037768 25 EQKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKDTF-SN-DDYLGEATISLEP 78 (111)
Q Consensus 25 ~~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~~~-~~-~~~lG~~~~~l~~ 78 (111)
.++|.+... .+|.|+|++.+.++. ....|.|+.++.... .+ ...+|-+-+||-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 478889998 999999999999886 334788887774321 11 2678888888753
No 145
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.00 E-value=0.8 Score=27.81 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCcEEEEEE--CCeEE----EeeeeCCCCCcccceEEEEEcC---C-CceEEEEEEeCCCCC----CCceeEEEEEECcc
Q 037768 13 VDPYVVLTC--RTQEQ----KSSIGSGSGPEWNETFVFTITG---D-VTELTLKIMDKDTFS----NDDYLGEATISLEP 78 (111)
Q Consensus 13 ~dp~v~v~~--~~~~~----~T~~~~~~~P~w~e~~~f~~~~---~-~~~l~i~v~~~~~~~----~~~~lG~~~~~l~~ 78 (111)
.+-||.+.+ +++.. +|..+...++.|||...|++.- + ...|.|++|+....+ ....+|.+.++|=+
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 466777765 33332 2332222678999999998754 2 338999999854321 23569999998776
Q ss_pred c
Q 037768 79 L 79 (111)
Q Consensus 79 l 79 (111)
.
T Consensus 106 ~ 106 (158)
T cd08398 106 Y 106 (158)
T ss_pred C
Confidence 4
No 146
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=93.84 E-value=0.12 Score=36.98 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=46.0
Q ss_pred EEeeeeCC-CCCcccceEEEEEcCC-CceEEEEEEeCCC----CCCCceeEEEEEECcccccCC
Q 037768 26 QKSSIGSG-SGPEWNETFVFTITGD-VTELTLKIMDKDT----FSNDDYLGEATISLEPLFMEG 83 (111)
Q Consensus 26 ~~T~~~~~-~~P~w~e~~~f~~~~~-~~~l~i~v~~~~~----~~~~~~lG~~~~~l~~l~~~~ 83 (111)
.+|.++.+ ++|.|.+.|.+..... .+.+.+.+++-+. ....+|+|++...+..+....
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 38889999 9999999988887764 4478888888543 345789999999999887543
No 147
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=93.76 E-value=0.16 Score=38.40 Aligned_cols=80 Identities=8% Similarity=0.155 Sum_probs=61.9
Q ss_pred CCcEEEEEECCeE-EEeeeeCC--CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccccCCCCCCeE
Q 037768 13 VDPYVVLTCRTQE-QKSSIGSG--SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLFMEGSLPPTA 89 (111)
Q Consensus 13 ~dp~v~v~~~~~~-~~T~~~~~--~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~~~ 89 (111)
.++|+.+.+.... .+|....+ .+|.|.+.|..........+.+.+-+.+..+....+|.+..++..+..+ .....|
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~-~~~~~~ 216 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG-HRIGGW 216 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc-ccccce
Confidence 5889998886655 35665555 8899999987777767778888887777666678999999999888754 445788
Q ss_pred EEec
Q 037768 90 YNVV 93 (111)
Q Consensus 90 ~~l~ 93 (111)
+++.
T Consensus 217 ~~Il 220 (887)
T KOG1329|consen 217 FPIL 220 (887)
T ss_pred eeee
Confidence 8876
No 148
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.28 E-value=0.14 Score=34.54 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=43.9
Q ss_pred CCcEEEEEECCeE-EEeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECccc
Q 037768 13 VDPYVVLTCRTQE-QKSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPL 79 (111)
Q Consensus 13 ~dp~v~v~~~~~~-~~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l 79 (111)
-+-||++....+. .+|.+... ..-.|.|.|...+. ....+.+-||+|.+-.+++++-...+.+..+
T Consensus 74 ~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv-~~~vl~~lvySW~pq~RHKLC~~g~l~~~~v 141 (442)
T KOG1452|consen 74 VCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVV-NIEVLHYLVYSWPPQRRHKLCHLGLLEAFVV 141 (442)
T ss_pred eeeeeeeeecccCccccccccCCCCccchhhceeecc-cceeeeEEEeecCchhhccccccchhhhhhh
Confidence 3667887765443 35666655 67788898887766 3457788889988877777765554444433
No 149
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.27 E-value=0.31 Score=28.80 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=34.5
Q ss_pred CCCcccceEEEEEcC---C-CceEEEEEEeCCCCCCC----ceeEEEEEECccc
Q 037768 34 SGPEWNETFVFTITG---D-VTELTLKIMDKDTFSND----DYLGEATISLEPL 79 (111)
Q Consensus 34 ~~P~w~e~~~f~~~~---~-~~~l~i~v~~~~~~~~~----~~lG~~~~~l~~l 79 (111)
..+.|+|...|++.- + +..|.|.+|........ ..+|.+.+++=+.
T Consensus 32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 589999999998653 2 34899999986654444 6899999998765
No 150
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.67 E-value=0.86 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=37.4
Q ss_pred eeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCC-----CCCCceeEEEEEECcc
Q 037768 28 SSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDT-----FSNDDYLGEATISLEP 78 (111)
Q Consensus 28 T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~-----~~~~~~lG~~~~~l~~ 78 (111)
+.++.. .+|.|+|++.+.++.. ...|.|++++-.. ......+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 334444 8999999999998763 3478889988442 2336789999999876
No 151
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=91.51 E-value=1.9 Score=26.80 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=38.3
Q ss_pred EEeeeeCC-CCCcccceEEEEEcCC---CceEEEEEEeCCC------CCCCceeEEEEEECcc
Q 037768 26 QKSSIGSG-SGPEWNETFVFTITGD---VTELTLKIMDKDT------FSNDDYLGEATISLEP 78 (111)
Q Consensus 26 ~~T~~~~~-~~P~w~e~~~f~~~~~---~~~l~i~v~~~~~------~~~~~~lG~~~~~l~~ 78 (111)
..|.+... .+|.|.|++-+.++.. ...|.|+.++..- ......+|-+-+||-+
T Consensus 56 ~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 56 AYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred EEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 57788888 9999999999998862 3478888887321 1123568888887654
No 152
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=91.12 E-value=2.5 Score=26.41 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=39.1
Q ss_pred EEeeeeCC-CCCcccceEEEEEcC---CCceEEEEEEeCC--CC-------CCCceeEEEEEECcc
Q 037768 26 QKSSIGSG-SGPEWNETFVFTITG---DVTELTLKIMDKD--TF-------SNDDYLGEATISLEP 78 (111)
Q Consensus 26 ~~T~~~~~-~~P~w~e~~~f~~~~---~~~~l~i~v~~~~--~~-------~~~~~lG~~~~~l~~ 78 (111)
..|.+... .+|.|.|++-+.++. ....|.|+.++.. .. .....+|-+-+||-.
T Consensus 58 ~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 58 AYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 57778888 999999999999886 3347888888854 11 123568888888765
No 153
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.51 E-value=2.8 Score=26.00 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=24.9
Q ss_pred EeeeeCC-CCCcccceEEEEEcC---C-CceEEEEEEeC
Q 037768 27 KSSIGSG-SGPEWNETFVFTITG---D-VTELTLKIMDK 60 (111)
Q Consensus 27 ~T~~~~~-~~P~w~e~~~f~~~~---~-~~~l~i~v~~~ 60 (111)
+|..... .++.|+|...|.+.- + ...|.|.+|+.
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred eeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 4555555 779999999998664 2 33899999985
No 154
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.18 E-value=0.76 Score=28.13 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCcEEEEEE--CCeE----EEeee---eCC--CCCcccceEEEEEcC---C-CceEEEEEEeCCCCC---------CCce
Q 037768 13 VDPYVVLTC--RTQE----QKSSI---GSG--SGPEWNETFVFTITG---D-VTELTLKIMDKDTFS---------NDDY 68 (111)
Q Consensus 13 ~dp~v~v~~--~~~~----~~T~~---~~~--~~P~w~e~~~f~~~~---~-~~~l~i~v~~~~~~~---------~~~~ 68 (111)
.+-|+.+.+ +++. ..|+. .+. ..+.|+|...|++.- + +..|.|++|+....+ .+..
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 456777655 4332 23432 222 367799999998654 2 338999999865433 3578
Q ss_pred eEEEEEECccc
Q 037768 69 LGEATISLEPL 79 (111)
Q Consensus 69 lG~~~~~l~~l 79 (111)
+|.+.++|=+.
T Consensus 109 lG~~~~~LFd~ 119 (171)
T cd04012 109 LGWVSLPLFDF 119 (171)
T ss_pred EEEEeEeeEcc
Confidence 99999987764
No 155
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.22 E-value=3 Score=23.12 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=31.9
Q ss_pred CcEEEEEE--CCeE----EEeeeeCC-CCCcccceEEEEEcC---C-CceEEEEEEeCC
Q 037768 14 DPYVVLTC--RTQE----QKSSIGSG-SGPEWNETFVFTITG---D-VTELTLKIMDKD 61 (111)
Q Consensus 14 dp~v~v~~--~~~~----~~T~~~~~-~~P~w~e~~~f~~~~---~-~~~l~i~v~~~~ 61 (111)
+-|+.+.+ +++. ..|....- ..+.|||...|++.- + +..|.+.+|+..
T Consensus 33 ~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 33 DLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 66777765 4433 24554444 668999999987654 2 338899999854
No 156
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=86.63 E-value=1.3 Score=30.91 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=27.5
Q ss_pred eeEEEEEECcccccCCCCCCeEEEecc---CCeEeeEEEEEEEEE
Q 037768 68 YLGEATISLEPLFMEGSLPPTAYNVVK---NQEYCGEIRVGLTFT 109 (111)
Q Consensus 68 ~lG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~l~l~~~~~ 109 (111)
++|.+.++++.+...+.....||++.. .....|.+ +.+.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 489999999995544445679999872 22234555 566664
No 157
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.96 E-value=0.26 Score=36.40 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=43.8
Q ss_pred CCcEEEEEECCeEE-EeeeeCC-CCCcccceEEEEEcCCCceEEEEEEeCCCCCCCceeEEEEEECcccc
Q 037768 13 VDPYVVLTCRTQEQ-KSSIGSG-SGPEWNETFVFTITGDVTELTLKIMDKDTFSNDDYLGEATISLEPLF 80 (111)
Q Consensus 13 ~dp~v~v~~~~~~~-~T~~~~~-~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~~~~~~lG~~~~~l~~l~ 80 (111)
.+||+.+.+..... .+.+.+. ..|.|+++|..++. .+..+.|.++.......+.+..++++..+++.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 47888887754332 3444556 88999999999965 45677888888765555554555544444443
No 158
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=82.16 E-value=7.1 Score=22.13 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=36.1
Q ss_pred eEEEEEEeCCC---CCCCceeEEEEEECccccc-------------CCCCCCeEEEec-cCCeEeeEEEEEEEE
Q 037768 52 ELTLKIMDKDT---FSNDDYLGEATISLEPLFM-------------EGSLPPTAYNVV-KNQEYCGEIRVGLTF 108 (111)
Q Consensus 52 ~l~i~v~~~~~---~~~~~~lG~~~~~l~~l~~-------------~~~~~~~~~~l~-~~~~~~G~l~l~~~~ 108 (111)
.|.+.++.... .....++|.+.+++.+... ........|+|. ..+...|+|.+.+.+
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRL 103 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRL 103 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEE
Confidence 56666655322 3456789999999887731 111234558887 455678988877654
No 159
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=81.02 E-value=12 Score=28.30 Aligned_cols=76 Identities=17% Similarity=0.315 Sum_probs=50.9
Q ss_pred cEEEEEECCeEEEeeeeCCCCCcccceEEEEEcCCCceEEEEEEeCCCC---CCCceeEEEEEECcccccCCCCCCeEEE
Q 037768 15 PYVVLTCRTQEQKSSIGSGSGPEWNETFVFTITGDVTELTLKIMDKDTF---SNDDYLGEATISLEPLFMEGSLPPTAYN 91 (111)
Q Consensus 15 p~v~v~~~~~~~~T~~~~~~~P~w~e~~~f~~~~~~~~l~i~v~~~~~~---~~~~~lG~~~~~l~~l~~~~~~~~~~~~ 91 (111)
.||...+.+.+.+|..+....|.|+..=.|....+...+.+.+|.+... --|+-+|++-+.... .....+.|+.
T Consensus 362 vyctmevegeklqtdqaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil~ptp---ns~ks~ewh~ 438 (1218)
T KOG3543|consen 362 VYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQPTP---NSAKSPEWHT 438 (1218)
T ss_pred EEEEEEecccccccchhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEecCC---CCcCCcccee
Confidence 4777777777777776655889999888887777777888888876431 125567777654332 2223467887
Q ss_pred ec
Q 037768 92 VV 93 (111)
Q Consensus 92 l~ 93 (111)
..
T Consensus 439 mt 440 (1218)
T KOG3543|consen 439 MT 440 (1218)
T ss_pred ee
Confidence 65
No 160
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=78.50 E-value=21 Score=26.13 Aligned_cols=73 Identities=23% Similarity=0.308 Sum_probs=50.4
Q ss_pred CceeEEEEecCCCCcEEEEEECCeE-------EEeeeeCC-CCCcccceEEEEEcCCCc-e--------EEEEEEeCCCC
Q 037768 1 MNVRVFFILAGSVDPYVVLTCRTQE-------QKSSIGSG-SGPEWNETFVFTITGDVT-E--------LTLKIMDKDTF 63 (111)
Q Consensus 1 ~~~~~~~~~~~~~dp~v~v~~~~~~-------~~T~~~~~-~~P~w~e~~~f~~~~~~~-~--------l~i~v~~~~~~ 63 (111)
|+=|.|++.+...||+-+|.+.+-. .+..-... ++|. ++...+-+..... . +++++||-...
T Consensus 334 ~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~-~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~ 412 (521)
T PF09826_consen 334 MGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPY-DENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDP 412 (521)
T ss_pred eCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeEC-CCCeEEEEcccCcccccccccceeEEEEEecCCC
Confidence 4457899999999999999985422 34445555 7785 5655666554332 3 99999997766
Q ss_pred CCCceeEEEEE
Q 037768 64 SNDDYLGEATI 74 (111)
Q Consensus 64 ~~~~~lG~~~~ 74 (111)
....-+....+
T Consensus 413 ~~P~e~~~~~i 423 (521)
T PF09826_consen 413 ANPKELDKEVI 423 (521)
T ss_pred CCccEeEEEEc
Confidence 66666776655
No 161
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=77.05 E-value=14 Score=22.53 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=43.5
Q ss_pred cCCCCcEEEEEE----------CCe-EEEeeeeCC------CCCcccceEEEEEcC----CCceEEEEEEeCCCCCCCce
Q 037768 10 AGSVDPYVVLTC----------RTQ-EQKSSIGSG------SGPEWNETFVFTITG----DVTELTLKIMDKDTFSNDDY 68 (111)
Q Consensus 10 ~~~~dp~v~v~~----------~~~-~~~T~~~~~------~~P~w~e~~~f~~~~----~~~~l~i~v~~~~~~~~~~~ 68 (111)
....+-||+..+ +.. .-+|.+... ..-.|+-.|.+.+.. .-..|.++||..|..+++..
T Consensus 14 f~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~ 93 (168)
T PF07162_consen 14 FEEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRV 93 (168)
T ss_pred CCCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEE
Confidence 334566777655 122 334544433 235688777776554 23589999999999999999
Q ss_pred eEEEEEEC
Q 037768 69 LGEATISL 76 (111)
Q Consensus 69 lG~~~~~l 76 (111)
.|-..+.+
T Consensus 94 ~GYG~~~l 101 (168)
T PF07162_consen 94 EGYGFCHL 101 (168)
T ss_pred eEEeEEEe
Confidence 88766544
No 162
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=73.31 E-value=31 Score=24.67 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCcEEEEEECCeEEEeeeeCC-C--CCc----ccceEEEEEcC--------CC------ceEEEEEEeCCC-----C-CC
Q 037768 13 VDPYVVLTCRTQEQKSSIGSG-S--GPE----WNETFVFTITG--------DV------TELTLKIMDKDT-----F-SN 65 (111)
Q Consensus 13 ~dp~v~v~~~~~~~~T~~~~~-~--~P~----w~e~~~f~~~~--------~~------~~l~i~v~~~~~-----~-~~ 65 (111)
..-||+|++.+...+|..+.- . ++. -.-...|.+.. +. ..|.|.||.-.. + ..
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 345899999877766665543 2 111 11233444432 11 368999998432 1 34
Q ss_pred CceeEEEEEECcccccCCC---CCCeEEEeccCC-----eEeeEEEEEEEEEe
Q 037768 66 DDYLGEATISLEPLFMEGS---LPPTAYNVVKNQ-----EYCGEIRVGLTFTP 110 (111)
Q Consensus 66 ~~~lG~~~~~l~~l~~~~~---~~~~~~~l~~~~-----~~~G~l~l~~~~~~ 110 (111)
.++||.+.++++---..+. .+..|..+-+.. ....+|+|.+...|
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 6899999999884322221 246788886332 13467888776554
No 163
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=72.79 E-value=18 Score=21.67 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=53.3
Q ss_pred ecCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC-------------CCceEEEEEEeCCCCCCCceeEEEEE
Q 037768 9 LAGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG-------------DVTELTLKIMDKDTFSNDDYLGEATI 74 (111)
Q Consensus 9 ~~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~-------------~~~~l~i~v~~~~~~~~~~~lG~~~~ 74 (111)
+..+.|.|..+++-++.++|+.... --=.|+|.|.|+-.+ ....+.++++...... ...++...-
T Consensus 16 L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~ 94 (140)
T PF14909_consen 16 LCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEE 94 (140)
T ss_pred eCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEec
Confidence 4556788999999888888887766 444568999987433 1347889998876655 788888888
Q ss_pred ECccccc
Q 037768 75 SLEPLFM 81 (111)
Q Consensus 75 ~l~~l~~ 81 (111)
...++..
T Consensus 95 n~rDfLf 101 (140)
T PF14909_consen 95 NTRDFLF 101 (140)
T ss_pred cccceEc
Confidence 8888754
No 164
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.23 E-value=20 Score=22.03 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=42.9
Q ss_pred ecCCCCcEEEEEE--CC--------e---EEEeeeeCC-CCC-cccceEEEEEcC----CCceEEEEEEeCCCCCCCcee
Q 037768 9 LAGSVDPYVVLTC--RT--------Q---EQKSSIGSG-SGP-EWNETFVFTITG----DVTELTLKIMDKDTFSNDDYL 69 (111)
Q Consensus 9 ~~~~~dp~v~v~~--~~--------~---~~~T~~~~~-~~P-~w~e~~~f~~~~----~~~~l~i~v~~~~~~~~~~~l 69 (111)
+.-.+|.||+.++ +. + ++-+.-.+. .+| .||-.+...+.. .-..|.+.||..+.++++-..
T Consensus 22 FPe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~ 101 (187)
T KOG4027|consen 22 FPEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVT 101 (187)
T ss_pred cCCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceee
Confidence 3445788888765 11 1 122222334 555 455555555544 245899999999999999999
Q ss_pred EEEEEECc
Q 037768 70 GEATISLE 77 (111)
Q Consensus 70 G~~~~~l~ 77 (111)
|-..+.+-
T Consensus 102 GYg~~hiP 109 (187)
T KOG4027|consen 102 GYGMLHIP 109 (187)
T ss_pred eeeeEecC
Confidence 88776543
No 165
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.84 E-value=23 Score=21.00 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.6
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEE
Q 037768 50 VTELTLKIMDKDTFSNDDYLGEATI 74 (111)
Q Consensus 50 ~~~l~i~v~~~~~~~~~~~lG~~~~ 74 (111)
-..|.+++|+++++++.++-|-...
T Consensus 73 wprl~~qiw~~dnfgr~eiagyg~~ 97 (175)
T KOG4028|consen 73 WPRLHFQIWHHDNFGRCEIAGYGFC 97 (175)
T ss_pred CceeeeeeeecCcccceeecccceE
Confidence 3589999999999999888776544
No 166
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.40 E-value=12 Score=28.32 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=34.1
Q ss_pred CcccceEEEEEcCC----CceEEEEEEeCCCCCCCceeEEEEEECcc
Q 037768 36 PEWNETFVFTITGD----VTELTLKIMDKDTFSNDDYLGEATISLEP 78 (111)
Q Consensus 36 P~w~e~~~f~~~~~----~~~l~i~v~~~~~~~~~~~lG~~~~~l~~ 78 (111)
-.|||-..+++.-. ...+.|++|+.+......++|..++.+-.
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 45999998887653 33899999998877778899998887654
No 167
>PF13049 DUF3910: Protein of unknown function (DUF3910)
Probab=57.75 E-value=10 Score=20.17 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.8
Q ss_pred CceeEEEEecCCCCcEEE
Q 037768 1 MNVRVFFILAGSVDPYVV 18 (111)
Q Consensus 1 ~~~~~~~~~~~~~dp~v~ 18 (111)
||+...+.|.|.+-||+-
T Consensus 1 mn~~akvdwigtpkpyiy 18 (93)
T PF13049_consen 1 MNVQAKVDWIGTPKPYIY 18 (93)
T ss_pred CCccceeeeccCCCceEe
Confidence 788899999999999964
No 168
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=56.66 E-value=25 Score=18.50 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=20.3
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEE
Q 037768 50 VTELTLKIMDKDTFSNDDYLGEATIS 75 (111)
Q Consensus 50 ~~~l~i~v~~~~~~~~~~~lG~~~~~ 75 (111)
.....|++|+++....+++++.....
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 34667999999987779999887653
No 169
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=47.25 E-value=4 Score=30.57 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=30.5
Q ss_pred CCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC
Q 037768 11 GSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG 48 (111)
Q Consensus 11 ~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~ 48 (111)
-+.++++...++.+.++|+.... ..|+|||. .++..+
T Consensus 303 f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 303 FKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred cCCCchheeecchhhhhhhhhccccccccccc-cccccc
Confidence 35688888999999999999999 99999986 555543
No 170
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=32.33 E-value=1e+02 Score=17.67 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=39.6
Q ss_pred cCCCCcEEEEEECCeEE-EeeeeCCCCCc-ccceEEEEEcC--C-CceEEEEEEeCCC-CCCCceeEEEEEECccc
Q 037768 10 AGSVDPYVVLTCRTQEQ-KSSIGSGSGPE-WNETFVFTITG--D-VTELTLKIMDKDT-FSNDDYLGEATISLEPL 79 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~-~T~~~~~~~P~-w~e~~~f~~~~--~-~~~l~i~v~~~~~-~~~~~~lG~~~~~l~~l 79 (111)
.+.+.||++|.-+.... .+......... =.+.+.+.+.. . ...+.|.+|+.+. ....+.+.++.+--.-+
T Consensus 22 ~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 22 GGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSKEKMFRFWFNTGFI 97 (134)
T ss_dssp SSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCCEEEEEEEEEGGGS
T ss_pred CCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccccCeEEEEEEeeeee
Confidence 34578999998877664 22222221111 12334444332 1 3488899999763 34467788877764443
No 171
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=31.90 E-value=1.4e+02 Score=23.96 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=22.4
Q ss_pred EeeeeCC-CCCcccceEEEEEc--C-C-CceEEEEEEeC
Q 037768 27 KSSIGSG-SGPEWNETFVFTIT--G-D-VTELTLKIMDK 60 (111)
Q Consensus 27 ~T~~~~~-~~P~w~e~~~f~~~--~-~-~~~l~i~v~~~ 60 (111)
.|.-+.. ..|.||+...|.+. + + ...|.|.+|..
T Consensus 383 sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 383 STSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred ccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 4555555 88999998888764 3 2 22667777664
No 172
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=22.52 E-value=98 Score=17.83 Aligned_cols=14 Identities=36% Similarity=0.838 Sum_probs=10.8
Q ss_pred EeeEEEE--EEEEEeC
Q 037768 98 YCGEIRV--GLTFTPE 111 (111)
Q Consensus 98 ~~G~l~l--~~~~~~~ 111 (111)
..|.+++ .++|.|+
T Consensus 80 ~kGK~ri~~~leF~pd 95 (114)
T PF08872_consen 80 QKGKVRIKVSLEFIPD 95 (114)
T ss_pred ccceEEEEEEEEEecC
Confidence 4688888 8888874
No 173
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=20.34 E-value=2.2e+02 Score=21.57 Aligned_cols=50 Identities=18% Similarity=0.054 Sum_probs=35.8
Q ss_pred cCCCCcEEEEEECCeEEEeeeeCC-CCCcccceEEEEEcC-CCceEEEEEEe
Q 037768 10 AGSVDPYVVLTCRTQEQKSSIGSG-SGPEWNETFVFTITG-DVTELTLKIMD 59 (111)
Q Consensus 10 ~~~~dp~v~v~~~~~~~~T~~~~~-~~P~w~e~~~f~~~~-~~~~l~i~v~~ 59 (111)
.+.++|+..+......++...... ..|.|++.+.|.-.- +.....+..++
T Consensus 115 n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~ 166 (590)
T KOG1032|consen 115 NGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFD 166 (590)
T ss_pred hcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeee
Confidence 346788998888888888888888 999999999997543 32333344443
Done!