BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037769
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 20 CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKT-NSWTEGTDCC--SWDGVTCDNVTG 76
C P+ ALLQ K ++ +P T +SW TDCC +W GV CD T
Sbjct: 3 CNPQDKQALLQIK--------------KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ 48
Query: 77 --NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134
V LDL S L S+L +L +L L + N L + P +L +L YL
Sbjct: 49 TYRVNNLDL--SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166
++ +N G +P +S L LD S+ L+
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSH 151
++ L+ L+L++++F + EFG L +LT+L LSA+ F L ++H
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 74 VTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL-SPEFGRLKELT 132
+ GN+ LDL + C L L +LQ L+L++S+ S + + L+ L
Sbjct: 331 IKGNMRKLDLGTRC------------LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQ 378
Query: 133 YLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIE 168
YLNLS + GL +L LD++F L ++
Sbjct: 379 YLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVK 414
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 91 VGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL 144
+ IDDN+ + L+HL LNL+ NFLGS S F L +L L+LS ++ L
Sbjct: 311 INKIDDNA-FWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 115 NFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDL 160
N L ++ GRL+ L L LS ++F G +P E+ L LDL
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 82 DLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNF 141
+LY + G I TL + S L SL+L++ N+L + G L +L L L +
Sbjct: 398 ELYLQNNGFTGKIP--PTLSNCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 142 GGLVPYEMSHSSKLTHLDLSFCVLTIE 168
G +P E+ + L L L F LT E
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGE 481
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 93 TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
T D+N ++ L +++Y N L + E G + L LNL ++ G +P E+
Sbjct: 627 TFDNNGSMMFL------DMSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 153 SKLTHLDLS 161
L LDLS
Sbjct: 680 RGLNILDLS 688
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 115 NFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDL 160
N L ++ GRL+ L L LS ++F G +P E+ L LDL
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 82 DLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNF 141
+LY + G I TL + S L SL+L++ N+L + G L +L L L +
Sbjct: 395 ELYLQNNGFTGKIP--PTLSNCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 142 GGLVPYEMSHSSKLTHLDLSFCVLTIE 168
G +P E+ + L L L F LT E
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGE 478
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 93 TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
T D+N ++ L +++Y N L + E G + L LNL ++ G +P E+
Sbjct: 624 TFDNNGSMMFL------DMSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 153 SKLTHLDLS 161
L LDLS
Sbjct: 677 RGLNILDLS 685
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 20/107 (18%)
Query: 68 GVTCDNVTGNVIGLDL------YSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL 121
GV C GN+ LDL S C L L +LSHLQ+LNL+++ LG Q
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSL--------QLKNLSHLQTLNLSHNEPLGLQ- 389
Query: 122 SPEFGRLKELTYLNLSASNF---GGLVPYEMSHSSKLTHLDLSFCVL 165
S F +L L+L+ + P++ H ++ L+L++C L
Sbjct: 390 SQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV--LNLTYCFL 434
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 74 VTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL-SPEFGRLKELT 132
+ GNV L L C L L +LQ+L+L++++ S S + L L
Sbjct: 329 IRGNVKKLHLGVGC------------LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQ 376
Query: 133 YLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTI 167
LNLS + GL +L LDL+F L I
Sbjct: 377 TLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI 411
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 97 NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
N L++L+ L L N L S F +L LTYLNL+ + L + LT
Sbjct: 102 NGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160
Query: 157 HLDLSFCVL-TIEHRTFD 173
LDLS+ L ++ FD
Sbjct: 161 ELDLSYNQLQSLPEGVFD 178
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 119 SQLSP-EFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL-TIEHRTFD 173
++L P F L +LTYLNL+ + L +KLTHL L L +I FD
Sbjct: 53 TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
>pdb|2IWF|A Chain A, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWF|B Chain B, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWK|A Chain A, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
pdb|2IWK|B Chain B, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
Length = 642
Score = 27.7 bits (60), Expect = 4.0, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 40 ANYSFCNEENSSPKTNSWTEGTDCCSW 66
+NY FCN E+ +P N + TD ++
Sbjct: 194 SNYVFCNGEDEAPLVNDGSTMTDVATY 220
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 714
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 95 DDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSH 151
DDN H+ H S NL N SP+ GR E L+A + +MSH
Sbjct: 401 DDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVS-------DMSH 450
>pdb|3MA9|L Chain L, Crystal Structure Of Gp41 Derived Protein Complexed With
Fab 8066
pdb|3MAC|L Chain L, Crystal Structure Of Gp41-Derived Protein Complexed With
Fab 8062
Length = 213
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 2 QVDCSSPFHHFSFKTTHSCPPEQSLALLQFKNNTYVRS--ANYSFCNEENSSPKTNSWTE 59
++ CS + + + + P Q+ L+ + +N +S N N++ T S T+
Sbjct: 19 RISCSGDNIPYEYASWYQQKPGQAPVLVIYGDNNRPSGIPERFSGSNSGNTATLTISGTQ 78
Query: 60 GTD-----CCSWDGVTCDNVTGNVIGLDL 83
D C SWD +T D V G L +
Sbjct: 79 AEDEADYYCASWDSMTVDGVFGGGTKLTV 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,942,445
Number of Sequences: 62578
Number of extensions: 228929
Number of successful extensions: 423
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 55
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)