Query 037769
Match_columns 200
No_of_seqs 251 out of 2931
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.5E-21 5.3E-26 181.2 14.5 157 21-198 27-206 (968)
2 PLN03150 hypothetical protein; 99.8 1.5E-18 3.3E-23 155.6 14.1 157 17-197 366-532 (623)
3 PLN00113 leucine-rich repeat r 99.6 5.9E-15 1.3E-19 138.4 8.5 115 76-198 475-589 (968)
4 KOG0617 Ras suppressor protein 99.4 4.4E-15 9.5E-20 111.2 -4.0 114 76-198 33-167 (264)
5 PLN03150 hypothetical protein; 99.4 4.8E-13 1E-17 120.3 7.5 91 105-199 419-509 (623)
6 KOG0617 Ras suppressor protein 99.3 7.9E-14 1.7E-18 104.5 -4.3 113 77-200 80-192 (264)
7 KOG4194 Membrane glycoprotein 99.1 8.2E-12 1.8E-16 108.4 -1.8 85 76-165 269-353 (873)
8 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 88.8 4.5 107 76-194 19-127 (175)
9 KOG0472 Leucine-rich repeat pr 99.1 2.9E-11 6.4E-16 101.0 1.0 93 93-193 426-541 (565)
10 KOG4194 Membrane glycoprotein 99.0 4.4E-11 9.5E-16 104.0 -1.2 113 76-197 317-433 (873)
11 KOG0444 Cytoskeletal regulator 98.9 2.9E-11 6.4E-16 106.0 -4.2 107 77-193 223-329 (1255)
12 KOG0472 Leucine-rich repeat pr 98.9 4.4E-11 9.6E-16 99.9 -3.6 110 78-199 162-293 (565)
13 PF13855 LRR_8: Leucine rich r 98.9 9.8E-10 2.1E-14 69.1 2.3 59 130-191 2-60 (61)
14 KOG0618 Serine/threonine phosp 98.9 3.2E-10 6.8E-15 102.8 -0.6 105 76-191 383-487 (1081)
15 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 68.7 2.2 61 104-165 1-61 (61)
16 PF14580 LRR_9: Leucine-rich r 98.8 5.5E-09 1.2E-13 79.5 4.9 104 76-187 42-147 (175)
17 PF08263 LRRNT_2: Leucine rich 98.8 8.5E-09 1.8E-13 60.2 4.4 40 22-72 2-43 (43)
18 KOG0444 Cytoskeletal regulator 98.8 3.9E-10 8.4E-15 99.1 -2.2 105 77-191 269-373 (1255)
19 PRK15370 E3 ubiquitin-protein 98.8 1.1E-07 2.3E-12 87.2 13.4 22 17-38 57-78 (754)
20 KOG0618 Serine/threonine phosp 98.8 2.7E-10 5.9E-15 103.2 -3.6 108 76-194 359-466 (1081)
21 PRK15387 E3 ubiquitin-protein 98.8 5.9E-09 1.3E-13 95.3 4.9 41 154-198 423-463 (788)
22 PLN03210 Resistant to P. syrin 98.7 1.2E-07 2.5E-12 91.2 10.4 110 77-197 612-721 (1153)
23 PLN03210 Resistant to P. syrin 98.7 7.9E-08 1.7E-12 92.3 9.2 110 77-198 590-699 (1153)
24 cd00116 LRR_RI Leucine-rich re 98.7 7.7E-09 1.7E-13 85.1 1.8 90 104-193 137-234 (319)
25 PRK15370 E3 ubiquitin-protein 98.6 8.4E-08 1.8E-12 87.9 8.1 101 76-197 199-299 (754)
26 KOG0532 Leucine-rich repeat (L 98.6 2.6E-09 5.6E-14 92.7 -2.8 87 100-194 162-248 (722)
27 KOG4237 Extracellular matrix p 98.6 4.5E-09 9.7E-14 87.8 -1.4 113 75-197 66-180 (498)
28 cd00116 LRR_RI Leucine-rich re 98.6 2.1E-08 4.5E-13 82.5 2.2 115 76-194 81-207 (319)
29 KOG1259 Nischarin, modulator o 98.6 9.1E-09 2E-13 83.6 -0.0 107 76-194 307-413 (490)
30 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.6E-13 83.0 -0.4 104 76-193 284-387 (490)
31 KOG0532 Leucine-rich repeat (L 98.5 1.4E-08 2.9E-13 88.4 -1.2 110 76-200 121-230 (722)
32 PRK15387 E3 ubiquitin-protein 98.4 6.8E-07 1.5E-11 82.0 7.7 54 76-142 222-275 (788)
33 KOG4658 Apoptotic ATPase [Sign 98.4 1.4E-07 3E-12 87.9 2.6 107 76-191 545-653 (889)
34 KOG4237 Extracellular matrix p 98.4 7.4E-08 1.6E-12 80.7 0.4 91 99-193 269-359 (498)
35 COG4886 Leucine-rich repeat (L 98.3 2.8E-07 6E-12 78.5 2.7 103 77-191 117-220 (394)
36 COG4886 Leucine-rich repeat (L 98.3 3.8E-07 8.3E-12 77.7 3.2 107 80-199 97-204 (394)
37 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 4E-11 50.5 4.0 35 130-165 2-36 (44)
38 KOG1859 Leucine-rich repeat pr 98.2 5.7E-08 1.2E-12 86.8 -4.3 103 77-194 165-268 (1096)
39 PF12799 LRR_4: Leucine Rich r 98.2 3E-06 6.5E-11 49.6 3.7 36 154-193 2-37 (44)
40 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.3E-12 67.8 -2.2 83 76-165 53-135 (177)
41 KOG4579 Leucine-rich repeat (L 98.1 3.4E-07 7.4E-12 66.6 -1.3 110 77-197 28-139 (177)
42 KOG4658 Apoptotic ATPase [Sign 97.9 7.7E-06 1.7E-10 76.4 3.9 109 77-196 524-634 (889)
43 KOG3207 Beta-tubulin folding c 97.9 2.1E-06 4.6E-11 72.8 -1.2 17 177-193 298-314 (505)
44 KOG1644 U2-associated snRNP A' 97.8 2.9E-05 6.2E-10 60.0 4.5 105 77-189 43-149 (233)
45 KOG3207 Beta-tubulin folding c 97.8 4E-06 8.8E-11 71.2 -0.2 89 103-193 245-339 (505)
46 KOG0531 Protein phosphatase 1, 97.8 6E-06 1.3E-10 71.1 0.4 104 76-193 95-199 (414)
47 KOG0531 Protein phosphatase 1, 97.7 1.3E-05 2.7E-10 69.1 1.7 104 77-194 73-176 (414)
48 KOG1859 Leucine-rich repeat pr 97.7 7.2E-07 1.6E-11 79.9 -6.3 105 76-193 187-292 (1096)
49 KOG2739 Leucine-rich acidic nu 97.6 5.2E-05 1.1E-09 60.5 2.6 84 100-186 61-149 (260)
50 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.2E-09 54.6 4.6 86 103-193 41-126 (233)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.00011 2.3E-09 67.2 1.3 91 100-194 169-264 (699)
52 KOG2739 Leucine-rich acidic nu 97.2 0.00026 5.7E-09 56.5 2.5 90 100-194 39-130 (260)
53 KOG3665 ZYG-1-like serine/thre 97.1 0.00024 5.1E-09 65.0 2.3 108 76-191 122-231 (699)
54 KOG2982 Uncharacterized conser 97.1 0.00013 2.8E-09 59.7 0.5 85 104-190 71-156 (418)
55 PRK15386 type III secretion pr 97.0 0.0022 4.7E-08 55.1 7.1 10 181-190 178-187 (426)
56 KOG1909 Ran GTPase-activating 96.9 0.0003 6.6E-09 58.4 1.0 116 76-193 92-226 (382)
57 KOG1909 Ran GTPase-activating 96.7 0.00035 7.6E-09 58.0 -0.4 93 100-192 209-310 (382)
58 KOG2982 Uncharacterized conser 96.4 0.00073 1.6E-08 55.4 -0.4 84 76-164 71-157 (418)
59 PRK15386 type III secretion pr 96.3 0.014 3E-07 50.3 6.5 52 77-139 53-104 (426)
60 PF00560 LRR_1: Leucine Rich R 96.2 0.0016 3.5E-08 31.9 0.3 18 181-199 1-18 (22)
61 PF00560 LRR_1: Leucine Rich R 96.0 0.0022 4.7E-08 31.5 0.4 11 132-142 3-13 (22)
62 KOG2123 Uncharacterized conser 95.6 0.00065 1.4E-08 55.2 -4.0 82 71-159 37-123 (388)
63 KOG2123 Uncharacterized conser 95.3 0.0011 2.4E-08 53.9 -3.6 101 76-186 19-123 (388)
64 COG5238 RNA1 Ran GTPase-activa 95.0 0.037 8.1E-07 45.1 4.4 111 76-193 92-227 (388)
65 PF13504 LRR_7: Leucine rich r 94.5 0.022 4.7E-07 26.1 1.1 13 181-193 2-14 (17)
66 KOG0473 Leucine-rich repeat pr 94.4 0.00047 1E-08 54.7 -7.7 82 76-165 42-123 (326)
67 KOG2120 SCF ubiquitin ligase, 94.2 0.0026 5.7E-08 52.3 -4.1 38 152-191 312-349 (419)
68 KOG0473 Leucine-rich repeat pr 94.0 0.0015 3.3E-08 51.9 -5.6 88 99-193 37-124 (326)
69 smart00370 LRR Leucine-rich re 93.9 0.04 8.6E-07 27.9 1.4 14 180-193 2-15 (26)
70 smart00369 LRR_TYP Leucine-ric 93.9 0.04 8.6E-07 27.9 1.4 14 180-193 2-15 (26)
71 KOG2120 SCF ubiquitin ligase, 93.7 0.0025 5.3E-08 52.4 -4.9 88 105-194 186-274 (419)
72 COG5238 RNA1 Ran GTPase-activa 93.4 0.092 2E-06 42.9 3.4 86 76-165 30-132 (388)
73 PF13306 LRR_5: Leucine rich r 93.3 0.38 8.2E-06 33.7 6.4 100 76-189 12-112 (129)
74 PF13306 LRR_5: Leucine rich r 90.2 0.68 1.5E-05 32.4 4.7 84 99-190 7-91 (129)
75 PF13516 LRR_6: Leucine Rich r 86.2 0.32 6.8E-06 23.9 0.6 15 180-194 2-16 (24)
76 KOG1947 Leucine rich repeat pr 83.5 1 2.2E-05 38.8 2.9 90 99-191 209-306 (482)
77 smart00365 LRR_SD22 Leucine-ri 83.2 0.96 2.1E-05 23.0 1.6 15 179-193 1-15 (26)
78 smart00364 LRR_BAC Leucine-ric 83.2 0.78 1.7E-05 23.4 1.2 16 181-197 3-18 (26)
79 smart00368 LRR_RI Leucine rich 78.1 1.7 3.6E-05 22.3 1.5 14 180-193 2-15 (28)
80 KOG3864 Uncharacterized conser 77.6 0.3 6.6E-06 38.1 -2.1 82 77-162 102-185 (221)
81 KOG3763 mRNA export factor TAP 73.2 2.2 4.8E-05 38.1 1.8 64 101-166 215-283 (585)
82 KOG3864 Uncharacterized conser 71.9 0.68 1.5E-05 36.2 -1.4 81 105-189 102-185 (221)
83 KOG4308 LRR-containing protein 54.8 0.56 1.2E-05 41.4 -5.3 63 131-193 235-303 (478)
84 KOG4341 F-box protein containi 53.1 13 0.00027 32.5 2.6 112 76-191 320-437 (483)
85 KOG1947 Leucine rich repeat pr 50.5 6 0.00013 34.0 0.4 109 76-188 214-329 (482)
86 KOG4308 LRR-containing protein 40.7 1.6 3.6E-05 38.5 -4.6 112 78-193 89-217 (478)
87 TIGR00864 PCC polycystin catio 37.6 23 0.0005 37.9 2.2 32 110-142 1-32 (2740)
88 smart00367 LRR_CC Leucine-rich 33.5 32 0.0007 16.8 1.4 11 153-163 2-12 (26)
89 TIGR00864 PCC polycystin catio 31.2 36 0.00079 36.5 2.4 32 82-117 1-32 (2740)
90 KOG3763 mRNA export factor TAP 27.1 31 0.00067 31.1 1.0 63 75-144 217-285 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.5e-21 Score=181.22 Aligned_cols=157 Identities=31% Similarity=0.503 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcccCCCCCeeccCCCccc
Q 037769 21 PPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTL 100 (200)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l 100 (200)
.++|+.+|++||..+.++ . ..+.+|+...++|.|.||+|++. ++|+.|++ ++|.+.+.++. .+
T Consensus 27 ~~~~~~~l~~~~~~~~~~-~-----------~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L--~~~~i~~~~~~--~~ 89 (968)
T PLN00113 27 HAEELELLLSFKSSINDP-L-----------KYLSNWNSSADVCLWQGITCNNS-SRVVSIDL--SGKNISGKISS--AI 89 (968)
T ss_pred CHHHHHHHHHHHHhCCCC-c-----------ccCCCCCCCCCCCcCcceecCCC-CcEEEEEe--cCCCccccCCh--HH
Confidence 568899999999998654 2 25688987789999999999864 68999999 99999988888 78
Q ss_pred cCCCCCcEEEccCCCCCCCCCChhcc-CCCCCCEEeccCCcCCCCC----------------------cccccCCCCCCE
Q 037769 101 FHLSHLQSLNLAYSNFLGSQLSPEFG-RLKELTYLNLSASNFGGLV----------------------PYEMSHSSKLTH 157 (200)
Q Consensus 101 ~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~----------------------P~~l~~l~~L~~ 157 (200)
..+++|+.|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+ |..++.+++|++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 8899999999999998876 776654 6666777766666665544 444555555555
Q ss_pred EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 158 L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
|+|++|.+ .+.+|..++++++|++|+|++|.+.+.+|.
T Consensus 169 L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 169 LDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred EECccCcc---cccCChhhhhCcCCCeeeccCCCCcCcCCh
Confidence 55555555 234555566666666666666666655554
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=155.60 Aligned_cols=157 Identities=24% Similarity=0.340 Sum_probs=133.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCc-----cccceEecCC--C--CcEEEEEcccCC
Q 037769 17 THSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCC-----SWDGVTCDNV--T--GNVIGLDLYSSC 87 (200)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c-----~w~gv~c~~~--~--~~l~~L~L~~~~ 87 (200)
...+.++|+.||+++|..+..+ ...+|.. ++| .|.||.|... . ..|+.|+| ++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~--------------~~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L--~~ 427 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLP--------------LRFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGL--DN 427 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCc--------------ccCCCCC--CCCCCcccccccceeeccCCCCceEEEEEEC--CC
Confidence 3456778999999999988643 1236853 344 7999999532 1 25899999 99
Q ss_pred CCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCC
Q 037769 88 SWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTI 167 (200)
Q Consensus 88 n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~ 167 (200)
|.+.|.+|. .+..+++|+.|+|++|.+.+. +|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++
T Consensus 428 n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~- 503 (623)
T PLN03150 428 QGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS- 503 (623)
T ss_pred CCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-
Confidence 999999999 899999999999999999998 9999999999999999999999999999999999999999999994
Q ss_pred CCCchhhhhcCC-CCCCEEecccccCCcCCC
Q 037769 168 EHRTFDLLASNL-TKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 168 ~~~~lp~~l~~l-~~L~~L~Ls~N~l~g~iP 197 (200)
+.+|..++.+ .++..+++.+|.....+|
T Consensus 504 --g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 504 --GRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred --ccCChHHhhccccCceEEecCCccccCCC
Confidence 6788888764 477889999998655455
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=5.9e-15 Score=138.44 Aligned_cols=115 Identities=26% Similarity=0.325 Sum_probs=105.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+.+|. .+.+++.|+.|++++|.+.+. +|..+..+++|++|+|++|.+++.+|..+..+++|
T Consensus 475 ~~L~~L~l--s~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 475 KRLENLDL--SRNQFSGAVPR--KLGSLSELMQLKLSENKLSGE-IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred ccceEEEC--cCCccCCccCh--hhhhhhccCEEECcCCcceee-CChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 46888999 99999888888 888999999999999999988 89999999999999999999999999999999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
+.|+|++|++ .+.+|..+.+++.|+.|++++|++.|.||.
T Consensus 550 ~~L~Ls~N~l---~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 550 SQLDLSQNQL---SGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CEEECCCCcc---cccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999 467899999999999999999999999986
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=4.4e-15 Score=111.25 Aligned_cols=114 Identities=24% Similarity=0.333 Sum_probs=92.2
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|.| ++|.++ .+|+ .+..+.+|+.|++.+|++.. +|..+..+++|+.|+++.|++. .+|..|+.++.|
T Consensus 33 s~ITrLtL--SHNKl~-~vpp--nia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 33 SNITRLTL--SHNKLT-VVPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhc--ccCcee-ecCC--cHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 57889999 999988 6676 69999999999999999986 8999999999999999999998 789999999999
Q ss_pred CEEeccCCcCCCC---------------------CCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 156 THLDLSFCVLTIE---------------------HRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 156 ~~L~Ls~N~l~~~---------------------~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
+.|||.+|+++-. ...+|..++++++|+.|.+.+|.+- .+|.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcH
Confidence 9999999887410 0135666777777777777777655 3554
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=4.8e-13 Score=120.28 Aligned_cols=91 Identities=24% Similarity=0.385 Sum_probs=86.3
Q ss_pred CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCE
Q 037769 105 HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL 184 (200)
Q Consensus 105 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~ 184 (200)
.++.|+|++|.+.+. +|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++ +.+|..++++++|++
T Consensus 419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls---g~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN---GSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC---CCCchHHhcCCCCCE
Confidence 478899999999998 9999999999999999999999999999999999999999999994 678999999999999
Q ss_pred EecccccCCcCCCCC
Q 037769 185 LYLGATNMSLIKPFS 199 (200)
Q Consensus 185 L~Ls~N~l~g~iP~~ 199 (200)
|+|++|+++|.+|..
T Consensus 495 L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 495 LNLNGNSLSGRVPAA 509 (623)
T ss_pred EECcCCcccccCChH
Confidence 999999999999975
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=7.9e-14 Score=104.54 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=80.1
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.|++ .-|.+. .+|. .|+.++.|++|||.+|++....+|..|..++.|+-|.|+.|.|. .+|..++.+++|+
T Consensus 80 klr~lnv--gmnrl~-~lpr--gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 80 KLRILNV--GMNRLN-ILPR--GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ 153 (264)
T ss_pred hhhheec--chhhhh-cCcc--ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence 4444444 444444 3444 45556666666666665554445555555666666666666666 6788899999999
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 200 (200)
.|.+..|.+ -++|.+++.+++|+.|++.+|.++ .+|+++
T Consensus 154 il~lrdndl----l~lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 154 ILSLRDNDL----LSLPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred EEeeccCch----hhCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 999999998 478999999999999999999998 577753
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=8.2e-12 Score=108.41 Aligned_cols=85 Identities=24% Similarity=0.279 Sum_probs=64.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|+| +.|++...-.. .+.++++|+.|++++|.|... .++.+...++|+.|+|++|+++..-+..|..|..|
T Consensus 269 ~kme~l~L--~~N~l~~vn~g--~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 269 EKMEHLNL--ETNRLQAVNEG--WLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred cccceeec--ccchhhhhhcc--cccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 46788888 88888755555 678888889999999988887 77888888888888888888885444456555566
Q ss_pred CEEeccCCcC
Q 037769 156 THLDLSFCVL 165 (200)
Q Consensus 156 ~~L~Ls~N~l 165 (200)
+.|+|+.|.+
T Consensus 344 e~LnLs~Nsi 353 (873)
T KOG4194|consen 344 EELNLSHNSI 353 (873)
T ss_pred hhhcccccch
Confidence 6666655555
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.1e-10 Score=88.79 Aligned_cols=107 Identities=23% Similarity=0.243 Sum_probs=41.3
Q ss_pred CcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccc-cCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM-SHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l-~~l~ 153 (200)
.+++.|+| ++|.|. .+.. +. .+.+|+.|++++|.++. ++ .+..+++|+.|++++|.++ .+...+ ..++
T Consensus 19 ~~~~~L~L--~~n~I~-~Ie~---L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 19 VKLRELNL--RGNQIS-TIEN---LGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp --------------------S-----TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred cccccccc--cccccc-cccc---hhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 36788999 998887 3433 54 57889999999999986 43 5778899999999999998 454444 4688
Q ss_pred CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
+|+.|++++|++... ..+ ..++.+++|++|+|.+|++..
T Consensus 89 ~L~~L~L~~N~I~~l-~~l-~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 89 NLQELYLSNNKISDL-NEL-EPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp T--EEE-TTS---SC-CCC-GGGGG-TT--EEE-TT-GGGG
T ss_pred cCCEEECcCCcCCCh-HHh-HHHHcCCCcceeeccCCcccc
Confidence 999999999998642 222 456788999999999998863
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=2.9e-11 Score=100.97 Aligned_cols=93 Identities=29% Similarity=0.344 Sum_probs=65.3
Q ss_pred ccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCC-----------------------cCCCCCcccc
Q 037769 93 TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS-----------------------NFGGLVPYEM 149 (200)
Q Consensus 93 ~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-----------------------~l~~~~P~~l 149 (200)
.+|. .+..++.|..|+|++|.+.. +|..++.+..||.|+++.| ++...-|..+
T Consensus 426 fv~~--~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 426 FVPL--ELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred cchH--HHHhhhcceeeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHh
Confidence 4444 45555555555555555543 4555555555555555554 4442333448
Q ss_pred cCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 150 SHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
.+|.+|.+|||.+|.+ ..+|+.+++|++|++|.+.+|+|.
T Consensus 502 ~nm~nL~tLDL~nNdl----q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDL----QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCch----hhCChhhccccceeEEEecCCccC
Confidence 8899999999999999 579999999999999999999998
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.99 E-value=4.4e-11 Score=103.97 Aligned_cols=113 Identities=24% Similarity=0.261 Sum_probs=88.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc---cccCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY---EMSHS 152 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~---~l~~l 152 (200)
.++..|+| ++|.|+..-+. +|..+..|++|+|+.|.+... .-..|..+++|+.|||++|.+++.+-+ .+.+|
T Consensus 317 qkL~~LdL--s~N~i~~l~~~--sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 317 QKLKELDL--SSNRITRLDEG--SFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred ccceeEec--cccccccCChh--HHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 57888888 88888855555 788888888888888888764 445677888999999999998876654 47788
Q ss_pred CCCCEEeccCCcCCCCCCchh-hhhcCCCCCCEEecccccCCcCCC
Q 037769 153 SKLTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|+.|+|.+|++ ..+| ..|..+..|++|+|.+|.|-..-|
T Consensus 392 ~~LrkL~l~gNql----k~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 392 PSLRKLRLTGNQL----KSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred hhhhheeecCcee----eecchhhhccCcccceecCCCCcceeecc
Confidence 9999999999998 3455 468899999999999998864333
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.94 E-value=2.9e-11 Score=106.00 Aligned_cols=107 Identities=25% Similarity=0.311 Sum_probs=62.4
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
++..+|+ +.|++. .+|+ .+.++.+|+.|+|++|.|+. +....+...+|++|++++|+++ .+|+.+..+++|+
T Consensus 223 NL~dvDl--S~N~Lp-~vPe--cly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 223 NLRDVDL--SENNLP-IVPE--CLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhccc--cccCCC-cchH--HHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 4555566 666665 4555 56666666666666666654 3444455556666666666666 5666666666666
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
.|.+.+|+++ ...+|..+++|.+|+++..++|.+.
T Consensus 295 kLy~n~NkL~--FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 295 KLYANNNKLT--FEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred HHHhccCccc--ccCCccchhhhhhhHHHHhhccccc
Confidence 6666666654 2345555555555555555555544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.92 E-value=4.4e-11 Score=99.92 Aligned_cols=110 Identities=26% Similarity=0.307 Sum_probs=64.0
Q ss_pred EEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC--------------
Q 037769 78 VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG-------------- 143 (200)
Q Consensus 78 l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 143 (200)
+..+++ .+|.+.. +|+ ....++.|++||...|.+.. +|+.++.+.+|+.|+|.+|.+..
T Consensus 162 l~~l~~--~~n~l~~-l~~--~~i~m~~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh 234 (565)
T KOG0472|consen 162 LSKLDL--EGNKLKA-LPE--NHIAMKRLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH 234 (565)
T ss_pred HHHhhc--cccchhh-CCH--HHHHHHHHHhcccchhhhhc--CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH
Confidence 344555 5555552 222 23335555555555555443 45555555555555555444431
Q ss_pred -------CCccccc-CCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 144 -------LVPYEMS-HSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 144 -------~~P~~l~-~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
.+|.++. .+.++.+|||.+|++ .++|+++..+++|.+||+++|.|++ +|.+
T Consensus 235 ~g~N~i~~lpae~~~~L~~l~vLDLRdNkl----ke~Pde~clLrsL~rLDlSNN~is~-Lp~s 293 (565)
T KOG0472|consen 235 VGENQIEMLPAEHLKHLNSLLVLDLRDNKL----KEVPDEICLLRSLERLDLSNNDISS-LPYS 293 (565)
T ss_pred hcccHHHhhHHHHhcccccceeeecccccc----ccCchHHHHhhhhhhhcccCCcccc-CCcc
Confidence 3343333 567777888888888 4678888888888888888888885 5544
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=9.8e-10 Score=69.08 Aligned_cols=59 Identities=34% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 130 ELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 130 ~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
+|++|++++|+++...+..|.++++|++|++++|.++ ..-|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~---~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT---SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES---EEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC---ccCHHHHcCCCCCCEEeCcCCc
Confidence 3445555555554222234445555555555555552 1112344555555555555554
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.86 E-value=3.2e-10 Score=102.79 Aligned_cols=105 Identities=25% Similarity=0.279 Sum_probs=84.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|+| ++|.+. .+|+. .+.++..|++|+|++|.++. +|..+..+..|++|...+|.+. .+| .+..++.|
T Consensus 383 ~hLKVLhL--syNrL~-~fpas-~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 383 KHLKVLHL--SYNRLN-SFPAS-KLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred cceeeeee--cccccc-cCCHH-HHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 57889999 999887 45542 67888899999999999986 7888888999999999888888 678 78889999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
+.+|++.|+++ ...+|..... ++|++|||++|.
T Consensus 455 ~~lDlS~N~L~--~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLSCNNLS--EVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred eEEecccchhh--hhhhhhhCCC-cccceeeccCCc
Confidence 99999999885 3344544333 789999999985
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.2e-09 Score=68.70 Aligned_cols=61 Identities=31% Similarity=0.396 Sum_probs=53.9
Q ss_pred CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL 165 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l 165 (200)
++|++|++++|.++.. .+..|..+++|++|++++|.+....|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999974 446789999999999999999966666899999999999999975
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=5.5e-09 Score=79.49 Aligned_cols=104 Identities=23% Similarity=0.210 Sum_probs=51.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc-cCCCCCCEEeccCCcCCCC-CcccccCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF-GRLKELTYLNLSASNFGGL-VPYEMSHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~-~P~~l~~l~ 153 (200)
.+++.|++ ++|.|. .+.. +..++.|+.|++++|.++. +...+ ..+++|+.|++++|++... --..+..++
T Consensus 42 ~~L~~L~L--s~N~I~-~l~~---l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 42 DKLEVLDL--SNNQIT-KLEG---LPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP 113 (175)
T ss_dssp TT--EEE---TTS--S---TT-------TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred cCCCEEEC--CCCCCc-cccC---ccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence 47899999 999998 4544 7889999999999999987 55555 4689999999999999742 113567889
Q ss_pred CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEec
Q 037769 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~L 187 (200)
+|+.|+|.+|.++....--...+..+++|+.||-
T Consensus 114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999999995321112335778999999884
No 17
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.80 E-value=8.5e-09 Score=60.23 Aligned_cols=40 Identities=40% Similarity=0.761 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCC--CCCccccceEec
Q 037769 22 PEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEG--TDCCSWDGVTCD 72 (200)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~c~w~gv~c~ 72 (200)
++|++||++||+.+..+ .. ..+.+|+.+ .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~-~~----------~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNND-PS----------GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-S-C-----------CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccc-cC----------cccccCCCcCCCCCeeeccEEeC
Confidence 67999999999999864 22 368899886 799999999995
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.79 E-value=3.9e-10 Score=99.11 Aligned_cols=105 Identities=24% Similarity=0.298 Sum_probs=81.7
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
++++|++ +.|.++ .+|+ .+++++.|+.|.+.+|+++-..+|+.|+.|..|+.+.+++|.+. .+|..+..+..|+
T Consensus 269 ~lEtLNl--SrNQLt-~LP~--avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 269 NLETLNL--SRNQLT-VLPD--AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred hhhhhcc--ccchhc-cchH--HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 4555566 666666 5666 67778888888888887776567888888888888888888887 7788888888888
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
.|.|+.|.+ -.+|..+.-|+.|+.||+.+|+
T Consensus 343 kL~L~~NrL----iTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 343 KLKLDHNRL----ITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred Hhcccccce----eechhhhhhcCCcceeeccCCc
Confidence 888888887 4678888888888888888886
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.79 E-value=1.1e-07 Score=87.23 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC
Q 037769 17 THSCPPEQSLALLQFKNNTYVR 38 (200)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~ 38 (200)
.....+++...++++.+.+..+
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p 78 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFP 78 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCC
Confidence 3455678899999998888766
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=2.7e-10 Score=103.22 Aligned_cols=108 Identities=25% Similarity=0.339 Sum_probs=94.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.|.+ .+|.++...-+ .+.++++|++|+|++|.+... ....+.++..|+.|+|++|+++ .+|..+.++..|
T Consensus 359 ~~Lq~Lyl--anN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~f-pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 359 AALQELYL--ANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSF-PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred HHHHHHHH--hcCcccccchh--hhccccceeeeeecccccccC-CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence 35677788 89999877666 699999999999999999863 3345778999999999999999 899999999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++|...+|++ ..+| ++..++.|+.+|++.|+++-
T Consensus 433 ~tL~ahsN~l----~~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 433 HTLRAHSNQL----LSFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHHhhcCCce----eech-hhhhcCcceEEecccchhhh
Confidence 9999999999 3677 78999999999999999863
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=5.9e-09 Score=95.31 Aligned_cols=41 Identities=15% Similarity=-0.004 Sum_probs=32.1
Q ss_pred CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
+|+.|++++|++ ..+|..+.++++|+.|+|++|+|+|.+|.
T Consensus 423 ~L~~L~Ls~NqL----t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 423 GLLSLSVYRNQL----TRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhccCcc----cccChHHhhccCCCeEECCCCCCCchHHH
Confidence 345556666666 35788899999999999999999988764
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=1.2e-07 Score=91.18 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=57.9
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.|++ .++.+. .++. .+..+++|+.|+|+++..... +| .+..+++|+.|+|++|.....+|..+..+++|+
T Consensus 612 ~L~~L~L--~~s~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 612 NLVKLQM--QGSKLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred CCcEEEC--cCcccc-cccc--ccccCCCCCEEECCCCCCcCc-CC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 4455555 555544 3333 345555666666655443333 44 255556666666665544445565566666666
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
.|++++|.. ...+|..+ ++++|+.|++++|...+.+|
T Consensus 685 ~L~L~~c~~---L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 685 DLDMSRCEN---LEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred EEeCCCCCC---cCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 666665433 23444433 55666666666655444444
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=7.9e-08 Score=92.31 Aligned_cols=110 Identities=21% Similarity=0.134 Sum_probs=53.5
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.|++ .++.+. .+|. .+ .+.+|+.|++.+|.+.. ++..+..+++|+.|+|+++...+.+|. +..+++|+
T Consensus 590 ~Lr~L~~--~~~~l~-~lP~--~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 590 KLRLLRW--DKYPLR-CMPS--NF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred ccEEEEe--cCCCCC-CCCC--cC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 3455555 444443 3343 22 34555555555555543 444445555555555555443334442 44555555
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
.|+|++|.. ...+|..++++++|+.|++++|...+.+|.
T Consensus 661 ~L~L~~c~~---L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 661 TLKLSDCSS---LVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred EEEecCCCC---ccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 555555443 234555555555555555555443334443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=7.7e-09 Score=85.10 Aligned_cols=90 Identities=26% Similarity=0.346 Sum_probs=43.3
Q ss_pred CCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CCchhhh
Q 037769 104 SHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HRTFDLL 175 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~ 175 (200)
++|+.|++++|.+++.. ++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ...+...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 55566666666555320 122334445566666666555531 222333444566666666655310 0112334
Q ss_pred hcCCCCCCEEecccccCC
Q 037769 176 ASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 176 l~~l~~L~~L~Ls~N~l~ 193 (200)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 445555666666666554
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.65 E-value=8.4e-08 Score=87.91 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=60.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.|++ ++|.++ .+|. .+. ++|+.|++++|.++. +|..+. .+|+.|+|++|.+. .+|..+. .+|
T Consensus 199 ~~L~~L~L--s~N~Lt-sLP~--~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L 264 (754)
T PRK15370 199 EQITTLIL--DNNELK-SLPE--NLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP--SAL 264 (754)
T ss_pred cCCcEEEe--cCCCCC-cCCh--hhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence 35677777 777777 4554 332 467777777777764 555432 35666777777666 5555443 356
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+.|++++|+++ .+|..+. ++|+.|++++|+|++ +|
T Consensus 265 ~~L~Ls~N~L~----~LP~~l~--~sL~~L~Ls~N~Lt~-LP 299 (754)
T PRK15370 265 QSLDLFHNKIS----CLPENLP--EELRYLSVYDNSIRT-LP 299 (754)
T ss_pred CEEECcCCccC----ccccccC--CCCcEEECCCCcccc-Cc
Confidence 67777776663 3444332 356666666666663 44
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=2.6e-09 Score=92.74 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=52.6
Q ss_pred ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC
Q 037769 100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL 179 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l 179 (200)
++.+..|..|+.+.|.+.. +|..++.+.+|+.|.+..|++. .+|..+..| .|..||++.|+++ .+|..|.+|
T Consensus 162 ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis----~iPv~fr~m 233 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS----YLPVDFRKM 233 (722)
T ss_pred cccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee----ecchhhhhh
Confidence 3344444444444444433 4444444555555555555554 345544432 3677788888883 678888888
Q ss_pred CCCCEEecccccCCc
Q 037769 180 TKLSLLYLGATNMSL 194 (200)
Q Consensus 180 ~~L~~L~Ls~N~l~g 194 (200)
+.|++|-|.+|++..
T Consensus 234 ~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQS 248 (722)
T ss_pred hhheeeeeccCCCCC
Confidence 888888888888873
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.60 E-value=4.5e-09 Score=87.82 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccC-CcCCCCCcc-cccCC
Q 037769 75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSA-SNFGGLVPY-EMSHS 152 (200)
Q Consensus 75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~P~-~l~~l 152 (200)
+...+.|+| ..|.|+...+. .|..++.|+.|||++|.|+.. -|+.|.++..|..|.+-+ |+|+ .+|. .|++|
T Consensus 66 P~~tveirL--dqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL 139 (498)
T KOG4237|consen 66 PPETVEIRL--DQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGL 139 (498)
T ss_pred CCcceEEEe--ccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhH
Confidence 456799999 99999944445 899999999999999999988 899999999988877665 8998 5554 78899
Q ss_pred CCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
..|+-|.+.-|++ .-.....|..|++|..|.+.+|.+. .|+
T Consensus 140 ~slqrLllNan~i---~Cir~~al~dL~~l~lLslyDn~~q-~i~ 180 (498)
T KOG4237|consen 140 SSLQRLLLNANHI---NCIRQDALRDLPSLSLLSLYDNKIQ-SIC 180 (498)
T ss_pred HHHHHHhcChhhh---cchhHHHHHHhhhcchhcccchhhh-hhc
Confidence 9999999988888 3455677889999999999998876 344
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=2.1e-08 Score=82.52 Aligned_cols=115 Identities=21% Similarity=0.146 Sum_probs=86.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCC---CcEEEccCCCCCCCC---CChhccCC-CCCCEEeccCCcCCCC----
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSH---LQSLNLAYSNFLGSQ---LSPEFGRL-KELTYLNLSASNFGGL---- 144 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~---L~~L~L~~n~l~~~~---~p~~l~~l-~~L~~L~Ls~n~l~~~---- 144 (200)
.+++.|++ ++|.+.+..+. .+..+.. |++|++++|.+.... +...+..+ ++|+.|++++|.+++.
T Consensus 81 ~~L~~L~l--~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 81 CGLQELDL--SDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred CceeEEEc--cCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 58999999 99998765555 4555555 999999999987421 23345666 8999999999999853
Q ss_pred CcccccCCCCCCEEeccCCcCCCC-CCchhhhhcCCCCCCEEecccccCCc
Q 037769 145 VPYEMSHSSKLTHLDLSFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 145 ~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++..+..+.+|++|++++|.+++. ...++..+..+++|++|++++|.+.+
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 334566778999999999999531 01244556677899999999998864
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=9.1e-09 Score=83.64 Aligned_cols=107 Identities=21% Similarity=0.119 Sum_probs=65.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
++++.|++ ++|++. .+. .+..+.+|+.|||++|.++. +...-..+.++++|.|+.|.+.. -..++.+.+|
T Consensus 307 Pkir~L~l--S~N~i~-~v~---nLa~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSL 376 (490)
T KOG1259|consen 307 PKLRRLIL--SQNRIR-TVQ---NLAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSL 376 (490)
T ss_pred cceeEEec--ccccee-eeh---hhhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhh
Confidence 45555666 555554 222 24555566666666665553 23333345556666666665541 1345667788
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
..||+++|++... +--..+++|+.|+++.|.+|++.+
T Consensus 377 vnLDl~~N~Ie~l--deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 377 VNLDLSSNQIEEL--DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeccccccchhhH--HHhcccccccHHHHHhhcCCCccc
Confidence 8889999888311 112457889999999999999886
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.2e-08 Score=82.98 Aligned_cols=104 Identities=20% Similarity=0.182 Sum_probs=86.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++++|| ++|.|+ .+.. ++.-++.++.|+++.|.+... ..+..+.+|+.|||++|.++ .+-.+-..+-++
T Consensus 284 q~LtelDL--S~N~I~-~iDE--SvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 284 QELTELDL--SGNLIT-QIDE--SVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred hhhhhccc--cccchh-hhhh--hhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 46788999 999988 6777 788899999999999999853 45889999999999999988 444444466688
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++|.|++|.+ .. -..+++|-+|..||+++|+|.
T Consensus 355 KtL~La~N~i----E~-LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 355 KTLKLAQNKI----ET-LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eeeehhhhhH----hh-hhhhHhhhhheeccccccchh
Confidence 9999999998 23 355788899999999999886
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.50 E-value=1.4e-08 Score=88.37 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=96.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.|+| +.|.+. .+|. .++.++ |+.|-+++|+++. +|..++.+.+|..||.+.|.+. .+|..++++.+|
T Consensus 121 ~~lt~l~l--s~NqlS-~lp~--~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl 191 (722)
T KOG0532|consen 121 EALTFLDL--SSNQLS-HLPD--GLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL 191 (722)
T ss_pred hHHHHhhh--ccchhh-cCCh--hhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH
Confidence 35678899 999988 7777 677776 8999999999986 8999999999999999999998 789999999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 200 (200)
+.|.+..|++ ..+|.++..| .|..||++.|+++ .||.+|
T Consensus 192 r~l~vrRn~l----~~lp~El~~L-pLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 192 RDLNVRRNHL----EDLPEELCSL-PLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred HHHHHhhhhh----hhCCHHHhCC-ceeeeecccCcee-ecchhh
Confidence 9999999999 4789988866 4889999999998 688754
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.43 E-value=6.8e-07 Score=82.03 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=33.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFG 142 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~ 142 (200)
.+++.|++ ..|.++ .+|. . +++|++|++++|+++. +|.. .++|+.|++++|.+.
T Consensus 222 ~~L~~L~L--~~N~Lt-~LP~--l---p~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 222 AHITTLVI--PDNNLT-SLPA--L---PPELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cCCCEEEc--cCCcCC-CCCC--C---CCCCcEEEecCCccCc--ccCc---ccccceeeccCCchh
Confidence 35677777 777776 3554 2 4678888888888875 5532 234445544444444
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=1.4e-07 Score=87.86 Aligned_cols=107 Identities=24% Similarity=0.290 Sum_probs=86.6
Q ss_pred CcEEEEEcccCCCC--CeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCC
Q 037769 76 GNVIGLDLYSSCSW--LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~--l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~ 153 (200)
.++++|-+ ..|. +. .++.+ .|..++.|++|||++|.-.+. +|..++.|-+||+|++++..+. .+|..+++|+
T Consensus 545 ~~L~tLll--~~n~~~l~-~is~~-ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk 618 (889)
T KOG4658|consen 545 PKLRTLLL--QRNSDWLL-EISGE-FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK 618 (889)
T ss_pred CccceEEE--eecchhhh-hcCHH-HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence 46788888 7775 33 33321 578899999999998776666 9999999999999999999999 8999999999
Q ss_pred CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
.|.+|++..+.. ...+|.....|.+|++|.+..-.
T Consensus 619 ~L~~Lnl~~~~~---l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 619 KLIYLNLEVTGR---LESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhheeccccccc---cccccchhhhcccccEEEeeccc
Confidence 999999998775 34456667779999999876643
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.38 E-value=7.4e-08 Score=80.68 Aligned_cols=91 Identities=22% Similarity=0.127 Sum_probs=77.5
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcC
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASN 178 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~ 178 (200)
.|..+++|++|+|++|.++.. -+..|..+.+++.|.|..|++...--.-|.++..|++|+|.+|+++ ...|..|..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it---~~~~~aF~~ 344 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT---TVAPGAFQT 344 (498)
T ss_pred HHhhcccceEeccCCCccchh-hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE---EEecccccc
Confidence 578899999999999999987 7888999999999999999987544456788999999999999995 456778888
Q ss_pred CCCCCEEecccccCC
Q 037769 179 LTKLSLLYLGATNMS 193 (200)
Q Consensus 179 l~~L~~L~Ls~N~l~ 193 (200)
+..|..|+|-.|++.
T Consensus 345 ~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFN 359 (498)
T ss_pred cceeeeeehccCccc
Confidence 999999999888764
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=2.8e-07 Score=78.55 Aligned_cols=103 Identities=26% Similarity=0.292 Sum_probs=59.8
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCC-CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLS-HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++.+++ ..|.+. .+++ ....++ +|+.|++++|.+.. +|..+..++.|+.|++++|.+. .+|...+.++.|
T Consensus 117 ~l~~L~l--~~n~i~-~i~~--~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 117 NLTSLDL--DNNNIT-DIPP--LIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred ceeEEec--CCcccc-cCcc--ccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 4566666 666655 4444 344443 66666666666654 4455666666666666666666 455544456666
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
+.|++++|++ ..+|.....+..|+.|.+++|.
T Consensus 189 ~~L~ls~N~i----~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 189 NNLDLSGNKI----SDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hheeccCCcc----ccCchhhhhhhhhhhhhhcCCc
Confidence 6666666666 2455544444556666666663
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=3.8e-07 Score=77.71 Aligned_cols=107 Identities=35% Similarity=0.478 Sum_probs=89.0
Q ss_pred EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCC-CCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769 80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLK-ELTYLNLSASNFGGLVPYEMSHSSKLTHL 158 (200)
Q Consensus 80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L 158 (200)
.+++ ..+.+...+.. +..++.++.|++.+|.++. +|+....+. +|+.|++++|.+. .+|..+..+++|+.|
T Consensus 97 ~l~~--~~~~~~~~~~~---~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDL--NLNRLRSNISE---LLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168 (394)
T ss_pred eeec--cccccccCchh---hhcccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhcccccccc
Confidence 4666 67766434433 6677899999999999987 788777785 9999999999998 777788999999999
Q ss_pred eccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 159 DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 159 ~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
++++|+++ .+|.....++.|+.|++++|++. .||..
T Consensus 169 ~l~~N~l~----~l~~~~~~~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 169 DLSFNDLS----DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred ccCCchhh----hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence 99999994 67777778899999999999998 57753
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1.8e-06 Score=50.49 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=16.2
Q ss_pred CCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769 130 ELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL 165 (200)
Q Consensus 130 ~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l 165 (200)
+|++|++++|+++ .+|..+++|++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 3455555555554 3444444555555555555544
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=5.7e-08 Score=86.82 Aligned_cols=103 Identities=32% Similarity=0.324 Sum_probs=74.1
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc-cccCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY-EMSHSSKL 155 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~-~l~~l~~L 155 (200)
.+..+++ +.|.+. .+.. ++.-+++|+.|+|++|+++.. +.+..+++|++|||++|.+. .+|. ...+++ |
T Consensus 165 ~L~~a~f--syN~L~-~mD~--SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 165 KLATASF--SYNRLV-LMDE--SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L 234 (1096)
T ss_pred hHhhhhc--chhhHH-hHHH--HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhh-h
Confidence 4566677 777776 5555 677788888888888888763 36778888888888888887 5554 233333 8
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
+.|.+.+|.++ .+ ..+.+|++|+.||+++|-|++
T Consensus 235 ~~L~lrnN~l~----tL-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 235 QLLNLRNNALT----TL-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeeeecccHHH----hh-hhHHhhhhhhccchhHhhhhc
Confidence 88888888773 22 346778888888888887664
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=3e-06 Score=49.60 Aligned_cols=36 Identities=36% Similarity=0.360 Sum_probs=19.9
Q ss_pred CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
+|++|++++|+++ .+|..+++|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~----~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT----DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S----SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc----ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666662 45555566666666666666555
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2e-07 Score=67.79 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=56.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.++| ++|.+....+. .-..++.++.|+|++|.++. +|.++..++.|+.|+++.|.+. ..|.-+..|.+|
T Consensus 53 ~el~~i~l--s~N~fk~fp~k--ft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 53 YELTKISL--SDNGFKKFPKK--FTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred ceEEEEec--ccchhhhCCHH--Hhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 45677777 77777633223 33345677777777777765 6777777777777777777777 556666667777
Q ss_pred CEEeccCCcC
Q 037769 156 THLDLSFCVL 165 (200)
Q Consensus 156 ~~L~Ls~N~l 165 (200)
-.|+..+|..
T Consensus 126 ~~Lds~~na~ 135 (177)
T KOG4579|consen 126 DMLDSPENAR 135 (177)
T ss_pred HHhcCCCCcc
Confidence 7777777666
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=3.4e-07 Score=66.60 Aligned_cols=110 Identities=25% Similarity=0.255 Sum_probs=85.1
Q ss_pred cEEEEEcccCCCCCeeccCCCc-cccCCCCCcEEEccCCCCCCCCCChhccC-CCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNS-TLFHLSHLQSLNLAYSNFLGSQLSPEFGR-LKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~-~l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
....++| +.+.+- .++++. .+....+|+.++|++|.+.. +|+.|.. .+.++.|++++|.++ .+|.++..++.
T Consensus 28 E~h~ldL--ssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDL--SSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA 101 (177)
T ss_pred Hhhhccc--ccchhh-HHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence 4456677 766553 333300 24456678888999999986 6777765 468999999999999 79999999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
|+.|+++.|.+. ..|..+..|.+|-.|+..+|.+. +||
T Consensus 102 Lr~lNl~~N~l~----~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 102 LRSLNLRFNPLN----AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred hhhcccccCccc----cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 999999999994 56777777889999999888776 455
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.93 E-value=7.7e-06 Score=76.42 Aligned_cols=109 Identities=24% Similarity=0.152 Sum_probs=83.6
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC--CCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN--FLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.++++.+ -+|.+. .++. -...+.|+.|-+..|. +... ....|..++.|++|||++|.=-+.+|..++.|-+
T Consensus 524 ~~rr~s~--~~~~~~-~~~~---~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 524 SVRRMSL--MNNKIE-HIAG---SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred heeEEEE--eccchh-hccC---CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 4555666 555544 3333 1234478888888886 4432 3345788999999999998877799999999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
|++|++++..+ ..+|..+++|+.|.+|++..+.-...+
T Consensus 597 LryL~L~~t~I----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 597 LRYLDLSDTGI----SHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred hhcccccCCCc----cccchHHHHHHhhheeccccccccccc
Confidence 99999999999 479999999999999999987654334
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.1e-06 Score=72.81 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=11.4
Q ss_pred cCCCCCCEEecccccCC
Q 037769 177 SNLTKLSLLYLGATNMS 193 (200)
Q Consensus 177 ~~l~~L~~L~Ls~N~l~ 193 (200)
..+++|++|+++.|++.
T Consensus 298 ~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIR 314 (505)
T ss_pred cccccceeeecccCccc
Confidence 45567777777777764
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=2.9e-05 Score=59.97 Aligned_cols=105 Identities=20% Similarity=0.104 Sum_probs=75.4
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc--cccCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY--EMSHSSK 154 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l~~ 154 (200)
....+|| +.|.+. .++ .|..++.|..|.+.+|.|+.. -|.--..++.|..|.|.+|++. .+.+ .+..+++
T Consensus 43 ~~d~iDL--tdNdl~-~l~---~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDL--TDNDLR-KLD---NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK 114 (233)
T ss_pred ccceecc--cccchh-hcc---cCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchh-hhhhcchhccCCc
Confidence 4567889 888876 444 377788999999999999975 4444445778999999999887 3332 4667889
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccc
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGA 189 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~ 189 (200)
|++|.+-+|..+....----.+..+++|+.||+..
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999999988411000012367788999998764
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=4e-06 Score=71.15 Aligned_cols=89 Identities=24% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-Cccc-----ccCCCCCCEEeccCCcCCCCCCchhhhh
Q 037769 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYE-----MSHSSKLTHLDLSFCVLTIEHRTFDLLA 176 (200)
Q Consensus 103 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~-----l~~l~~L~~L~Ls~N~l~~~~~~lp~~l 176 (200)
+..|+.|+|++|++-..+.-...+.++.|+.|+++.+.+... .|+. ...+++|++|++..|++. ....-..+
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~sl~~l 322 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWRSLNHL 322 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc--cccccchh
Confidence 344445555555443311112334455555555555544321 2221 233455555555555552 11111223
Q ss_pred cCCCCCCEEecccccCC
Q 037769 177 SNLTKLSLLYLGATNMS 193 (200)
Q Consensus 177 ~~l~~L~~L~Ls~N~l~ 193 (200)
..+++|+.|.+..|.++
T Consensus 323 ~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLN 339 (505)
T ss_pred hccchhhhhhccccccc
Confidence 34445555555555544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.78 E-value=6e-06 Score=71.13 Aligned_cols=104 Identities=26% Similarity=0.312 Sum_probs=54.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.+++ ..|.|.. +.. .+..+.+|++|++++|.|+.. ..+..++.|+.|++++|.++. + ..+..++.|
T Consensus 95 ~~l~~l~l--~~n~i~~-i~~--~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L 164 (414)
T KOG0531|consen 95 KSLEALDL--YDNKIEK-IEN--LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISD-I-SGLESLKSL 164 (414)
T ss_pred cceeeeec--cccchhh-ccc--chhhhhcchheeccccccccc---cchhhccchhhheeccCcchh-c-cCCccchhh
Confidence 34555566 5665552 222 244566666666666666542 224455556666666666652 2 223445566
Q ss_pred CEEeccCCcCCCCCCchhhh-hcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLL-ASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~-l~~l~~L~~L~Ls~N~l~ 193 (200)
+.+++++|.++ .+... ...+.+|+.+++.+|.+.
T Consensus 165 ~~l~l~~n~i~----~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIV----DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhh----hhhhhhhhhccchHHHhccCCchh
Confidence 66666666663 22221 345556666666666554
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=1.3e-05 Score=69.13 Aligned_cols=104 Identities=23% Similarity=0.226 Sum_probs=80.0
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
.+..+.+ ..|.+.. +-. .+..+++|+.|++..|.+.. +...+..+.+|++|++++|.|+..- .+..++.|+
T Consensus 73 ~l~~l~l--~~n~i~~-~~~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~ 143 (414)
T KOG0531|consen 73 SLKELNL--RQNLIAK-ILN--HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK 143 (414)
T ss_pred hHHhhcc--chhhhhh-hhc--ccccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchh
Confidence 4556667 7777763 222 47889999999999999987 4443788999999999999998442 356777799
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
.|++++|.++. + ..+..++.|+.+++++|.+..
T Consensus 144 ~L~l~~N~i~~----~-~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 144 ELNLSGNLISD----I-SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hheeccCcchh----c-cCCccchhhhcccCCcchhhh
Confidence 99999999942 2 345668899999999998874
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=7.2e-07 Score=79.94 Aligned_cols=105 Identities=23% Similarity=0.315 Sum_probs=81.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh-ccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
..++.|+| ++|.++ ... .+..+++|+.|||++|.+.. +|.- ...+ +|+.|.+++|.++. + ..+.+|++
T Consensus 187 ~ale~LnL--shNk~~-~v~---~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~Lks 255 (1096)
T KOG1859|consen 187 PALESLNL--SHNKFT-KVD---NLRRLPKLKHLDLSYNCLRH--VPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLKS 255 (1096)
T ss_pred HHhhhhcc--chhhhh-hhH---HHHhcccccccccccchhcc--ccccchhhh-hheeeeecccHHHh-h-hhHHhhhh
Confidence 56889999 999987 332 48889999999999999986 4532 2233 49999999999873 2 35778999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
|+.|||++|-+.+.. .+ ..++.|..|+.|+|.+|++-
T Consensus 256 L~~LDlsyNll~~hs-eL-~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHS-EL-EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcch-hh-hHHHHHHHHHHHhhcCCccc
Confidence 999999999986532 22 34567788999999999863
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.55 E-value=5.2e-05 Score=60.47 Aligned_cols=84 Identities=24% Similarity=0.230 Sum_probs=47.9
Q ss_pred ccCCCCCcEEEccCC--CCCCCCCChhccCCCCCCEEeccCCcCCCCCccc---ccCCCCCCEEeccCCcCCCCCCchhh
Q 037769 100 LFHLSHLQSLNLAYS--NFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE---MSHSSKLTHLDLSFCVLTIEHRTFDL 174 (200)
Q Consensus 100 l~~l~~L~~L~L~~n--~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~---l~~l~~L~~L~Ls~N~l~~~~~~lp~ 174 (200)
+-.|++|+.|.++.| .+.+. ++.....+++|++|+++.|++.. +.. +..+.+|..|++..|..+....---.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred CCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 455667777777777 44444 44444555777777777777662 222 34455666777776655431111112
Q ss_pred hhcCCCCCCEEe
Q 037769 175 LASNLTKLSLLY 186 (200)
Q Consensus 175 ~l~~l~~L~~L~ 186 (200)
.|.-+++|++|+
T Consensus 138 vf~ll~~L~~LD 149 (260)
T KOG2739|consen 138 VFLLLPSLKYLD 149 (260)
T ss_pred HHHHhhhhcccc
Confidence 355566666665
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00029 Score=54.57 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=67.4
Q ss_pred CCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCC
Q 037769 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKL 182 (200)
Q Consensus 103 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L 182 (200)
+.....+||++|.+.. -+.|..+..|.+|.+.+|+|+..-|..-..+++|+.|.|.+|.+.- .+++ .-+..+++|
T Consensus 41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl-~pLa~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDL-DPLASCPKL 115 (233)
T ss_pred ccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhc-chhccCCcc
Confidence 3456789999999974 3468889999999999999996656544566789999999999842 1222 236788999
Q ss_pred CEEecccccCC
Q 037769 183 SLLYLGATNMS 193 (200)
Q Consensus 183 ~~L~Ls~N~l~ 193 (200)
++|.+-+|++.
T Consensus 116 ~~Ltll~Npv~ 126 (233)
T KOG1644|consen 116 EYLTLLGNPVE 126 (233)
T ss_pred ceeeecCCchh
Confidence 99999999876
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00011 Score=67.22 Aligned_cols=91 Identities=22% Similarity=0.219 Sum_probs=53.3
Q ss_pred ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC-CCcccccCCCCCCEEeccCCcCCCCCCchh----h
Q 037769 100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG-LVPYEMSHSSKLTHLDLSFCVLTIEHRTFD----L 174 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp----~ 174 (200)
..++++|..||+++.+++. + ..++.|++|+.|.+.+=.+.. ..-..+.+|++|++||+|........ .+. +
T Consensus 169 c~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYle 244 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLE 244 (699)
T ss_pred hhccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHH
Confidence 3456666666776666653 2 456666666666665544441 11124557788888888876663211 111 1
Q ss_pred hhcCCCCCCEEecccccCCc
Q 037769 175 LASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 175 ~l~~l~~L~~L~Ls~N~l~g 194 (200)
--..|++|+.||.|+..+.+
T Consensus 245 c~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCccccEEecCCcchhH
Confidence 22347788888888776654
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00026 Score=56.53 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=61.3
Q ss_pred ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCC--cCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhc
Q 037769 100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS--NFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLAS 177 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~ 177 (200)
...+..|+.|.+.+..++.. ..+..|++|+.|.++.| ++.+.++.....+++|+++++++|++.. ...+ ..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl-~pl~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTL-RPLK 113 (260)
T ss_pred cccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-cccc-chhh
Confidence 33455556666666666532 24567889999999999 6666666656667999999999999852 1122 2356
Q ss_pred CCCCCCEEecccccCCc
Q 037769 178 NLTKLSLLYLGATNMSL 194 (200)
Q Consensus 178 ~l~~L~~L~Ls~N~l~g 194 (200)
.+.+|..|++.+|..++
T Consensus 114 ~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhcchhhhhcccCCccc
Confidence 77788888888886553
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.14 E-value=0.00024 Score=65.04 Aligned_cols=108 Identities=23% Similarity=0.199 Sum_probs=63.9
Q ss_pred CcEEEEEcccCCCCCe--eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCC
Q 037769 76 GNVIGLDLYSSCSWLV--GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~--~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~ 153 (200)
.+++.|++ ++...- +++.. .-.-||+|+.|.+.+-.+...++-.-..++++|+.||+++.+++. + ..++.|+
T Consensus 122 ~nL~~LdI--~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDI--SGSELFSNGWPKK--IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLK 195 (699)
T ss_pred HhhhhcCc--cccchhhccHHHH--HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccc
Confidence 46777777 665432 22222 122367777777777666543223334567777778888777763 2 5567777
Q ss_pred CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
+|++|.+.+=.+. ...--..+-+|++|++||+|...
T Consensus 196 nLq~L~mrnLe~e--~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 196 NLQVLSMRNLEFE--SYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cHHHHhccCCCCC--chhhHHHHhcccCCCeeeccccc
Confidence 7777766655552 11112345677777888777654
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00013 Score=59.72 Aligned_cols=85 Identities=19% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCC
Q 037769 104 SHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKL 182 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L 182 (200)
+.++.+||.+|.++... +-.-+.+|++|++|+|+.|.+...|-..-..+.+|++|-|.+..+. -...-..+..++.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~--w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS--WTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC--hhhhhhhhhcchhh
Confidence 34445555555544310 1111234455555555555544222111123334455555444442 11122334444444
Q ss_pred CEEecccc
Q 037769 183 SLLYLGAT 190 (200)
Q Consensus 183 ~~L~Ls~N 190 (200)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555544
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.04 E-value=0.0022 Score=55.12 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=5.8
Q ss_pred CCCEEecccc
Q 037769 181 KLSLLYLGAT 190 (200)
Q Consensus 181 ~L~~L~Ls~N 190 (200)
+|+.|+++.|
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 5566665554
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.93 E-value=0.0003 Score=58.40 Aligned_cols=116 Identities=14% Similarity=0.064 Sum_probs=66.5
Q ss_pred CcEEEEEcccCCCCCeeccCCC--ccccCCCCCcEEEccCCCCCCCC------------CChhccCCCCCCEEeccCCcC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDN--STLFHLSHLQSLNLAYSNFLGSQ------------LSPEFGRLKELTYLNLSASNF 141 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~--~~l~~l~~L~~L~L~~n~l~~~~------------~p~~l~~l~~L~~L~Ls~n~l 141 (200)
++++.|+| +.|-+...-++. ..+.....|++|+|.+|.+.... .-..++.-+.|+++...+|++
T Consensus 92 ~~L~~ldL--SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 92 PKLQKLDL--SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CceeEeec--cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 48999999 999876433320 03455788888888888875320 011233456788888888877
Q ss_pred CCC----CcccccCCCCCCEEeccCCcCCCCC-CchhhhhcCCCCCCEEecccccCC
Q 037769 142 GGL----VPYEMSHSSKLTHLDLSFCVLTIEH-RTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 142 ~~~----~P~~l~~l~~L~~L~Ls~N~l~~~~-~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
... +...+...+.|+.+.+.+|.+.-.. ..+-..+.++++|++|||.+|.|+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 532 1123444456666666666652100 012334556666666666666554
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.70 E-value=0.00035 Score=58.03 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=44.8
Q ss_pred ccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCCCCCcc----cc-cCCCCCCEEeccCCcCCCCC-C
Q 037769 100 LFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFGGLVPY----EM-SHSSKLTHLDLSFCVLTIEH-R 170 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~P~----~l-~~l~~L~~L~Ls~N~l~~~~-~ 170 (200)
+..+++|++|||..|.++.. .+-..+..+++|+.|++++|.+...-.. .+ ...++|++|.+.+|.++--. .
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 44555666666666655432 0123344455566666666655432111 11 12455666666666653100 0
Q ss_pred chhhhhcCCCCCCEEecccccC
Q 037769 171 TFDLLASNLTKLSLLYLGATNM 192 (200)
Q Consensus 171 ~lp~~l~~l~~L~~L~Ls~N~l 192 (200)
.+-..+...+.|+.|+|++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 1222344456666666666665
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.00073 Score=55.42 Aligned_cols=84 Identities=24% Similarity=0.235 Sum_probs=62.1
Q ss_pred CcEEEEEcccCCCCCeec--cCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-CcccccCC
Q 037769 76 GNVIGLDLYSSCSWLVGT--IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYEMSHS 152 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~--~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~l~~l 152 (200)
.+|+.+|| .+|.|..+ +.. .+.+|++|+.|+++.|++... +-..-..+.+|++|.|.+..+... .-..+..+
T Consensus 71 ~~v~elDL--~~N~iSdWseI~~--ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 71 TDVKELDL--TGNLISDWSEIGA--ILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred hhhhhhhc--ccchhccHHHHHH--HHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 47889999 99988743 333 577899999999999999865 432224567899999998888754 23345677
Q ss_pred CCCCEEeccCCc
Q 037769 153 SKLTHLDLSFCV 164 (200)
Q Consensus 153 ~~L~~L~Ls~N~ 164 (200)
+.++.|.++.|.
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 788888888773
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.25 E-value=0.014 Score=50.31 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=23.7
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS 139 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n 139 (200)
.++.|++ +++.+. .+|. + -.+|+.|.++++.--.. +|..+ ..+|+.|++++|
T Consensus 53 ~l~~L~I--s~c~L~-sLP~---L--P~sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYI--KDCDIE-SLPV---L--PNELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEe--CCCCCc-ccCC---C--CCCCcEEEccCCCCccc-CCchh--hhhhhheEccCc
Confidence 3556666 655544 2222 1 12355566655332222 44333 235566666555
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.17 E-value=0.0016 Score=31.95 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=12.0
Q ss_pred CCCEEecccccCCcCCCCC
Q 037769 181 KLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 181 ~L~~L~Ls~N~l~g~iP~~ 199 (200)
+|++|++++|+|+ .||++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 3667777777776 56664
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0022 Score=31.48 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=4.5
Q ss_pred CEEeccCCcCC
Q 037769 132 TYLNLSASNFG 142 (200)
Q Consensus 132 ~~L~Ls~n~l~ 142 (200)
++|+|++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.00065 Score=55.22 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=56.7
Q ss_pred ecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccc--
Q 037769 71 CDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE-- 148 (200)
Q Consensus 71 c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~-- 148 (200)
|... +.+++|.| +-|.|+ .+.+ +..++.|++|+|..|.|...+.-.-+.++++|+.|.|..|...|.-+..
T Consensus 37 c~kM-p~lEVLsL--SvNkIs-sL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 37 CEKM-PLLEVLSL--SVNKIS-SLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred HHhc-ccceeEEe--eccccc-cchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 4433 56888888 888877 4443 6778888888888888875311234567888888888888887766643
Q ss_pred ---ccCCCCCCEEe
Q 037769 149 ---MSHSSKLTHLD 159 (200)
Q Consensus 149 ---l~~l~~L~~L~ 159 (200)
+..|++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 44566776664
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.0011 Score=53.89 Aligned_cols=101 Identities=19% Similarity=0.053 Sum_probs=72.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc--cccCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY--EMSHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l~ 153 (200)
..|+.|++ -+++|. .+. ...+|+.|++|.|+-|.|+.. ..+..+++|+.|.|..|.|. .+-. -+.+++
T Consensus 19 ~~vkKLNc--wg~~L~-DIs---ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 19 ENVKKLNC--WGCGLD-DIS---ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHhhhhcc--cCCCcc-HHH---HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 46788888 777776 332 356789999999999999863 34778899999999999887 3332 367888
Q ss_pred CCCEEeccCCcCCCCCCc--hhhhhcCCCCCCEEe
Q 037769 154 KLTHLDLSFCVLTIEHRT--FDLLASNLTKLSLLY 186 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~--lp~~l~~l~~L~~L~ 186 (200)
+|+.|-|..|.-.|..+. --..+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999999987542221 012355677777765
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.04 E-value=0.037 Score=45.14 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=59.5
Q ss_pred CcEEEEEcccCCCCCeeccCCC--ccccCCCCCcEEEccCCCCCCCCCCh-------------hccCCCCCCEEeccCCc
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDN--STLFHLSHLQSLNLAYSNFLGSQLSP-------------EFGRLKELTYLNLSASN 140 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~--~~l~~l~~L~~L~L~~n~l~~~~~p~-------------~l~~l~~L~~L~Ls~n~ 140 (200)
++++.++| +.|.+....|+. ..+..-+.|++|.|++|.+... --. ....-+.|++.....|+
T Consensus 92 p~l~~v~L--SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 92 PRLQKVDL--SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred Ccceeeec--cccccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 56777777 777766444430 0233446677777777766422 111 12234567777777776
Q ss_pred CCCCCccc-----ccCCCCCCEEeccCCcCCCCCCc-----hhhhhcCCCCCCEEecccccCC
Q 037769 141 FGGLVPYE-----MSHSSKLTHLDLSFCVLTIEHRT-----FDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 141 l~~~~P~~-----l~~l~~L~~L~Ls~N~l~~~~~~-----lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
+.. .|.. +..-..|+.+.+.+|.+. +. +-..+..+.+|++|||.+|-++
T Consensus 169 len-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 169 LEN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 642 2211 111235666666666652 11 1123445667777777777665
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.52 E-value=0.022 Score=26.05 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=5.3
Q ss_pred CCCEEecccccCC
Q 037769 181 KLSLLYLGATNMS 193 (200)
Q Consensus 181 ~L~~L~Ls~N~l~ 193 (200)
+|+.|++++|+|.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.38 E-value=0.00047 Score=54.69 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=65.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.||+ +.|.+. .+.. .+..++.+..|+++.|.+.. +|..++.+..++.+++..|.++ ..|.+++.++.+
T Consensus 42 kr~tvld~--~s~r~v-n~~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 42 KRVTVLDL--SSNRLV-NLGK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred ceeeeehh--hhhHHH-hhcc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 57888888 888766 3344 46677788888888888875 6888888888888888888887 678888888888
Q ss_pred CEEeccCCcC
Q 037769 156 THLDLSFCVL 165 (200)
Q Consensus 156 ~~L~Ls~N~l 165 (200)
+++++-.|.|
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 8888888877
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.0026 Score=52.27 Aligned_cols=38 Identities=26% Similarity=0.180 Sum_probs=19.7
Q ss_pred CCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 152 SSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
+++|.+|||++|..- ....-.+|.+++.|++|.++.+.
T Consensus 312 cp~l~~LDLSD~v~l--~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVML--KNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred CCceeeecccccccc--CchHHHHHHhcchheeeehhhhc
Confidence 455566666654331 12333445556666666666653
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.96 E-value=0.0015 Score=51.89 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=73.6
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcC
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASN 178 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~ 178 (200)
.+..+...+.||++.|.+.. +-..+..++.|..|+++.|.+. .+|..++.+..+..+++..|.. ...|..++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~----~~~p~s~~k 109 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH----SQQPKSQKK 109 (326)
T ss_pred hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch----hhCCccccc
Confidence 46677888899999998864 5566778889999999999988 7888888888888999988888 367888999
Q ss_pred CCCCCEEecccccCC
Q 037769 179 LTKLSLLYLGATNMS 193 (200)
Q Consensus 179 l~~L~~L~Ls~N~l~ 193 (200)
++.++++++..|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 999999999888764
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.86 E-value=0.04 Score=27.87 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=7.6
Q ss_pred CCCCEEecccccCC
Q 037769 180 TKLSLLYLGATNMS 193 (200)
Q Consensus 180 ~~L~~L~Ls~N~l~ 193 (200)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.86 E-value=0.04 Score=27.87 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=7.6
Q ss_pred CCCCEEecccccCC
Q 037769 180 TKLSLLYLGATNMS 193 (200)
Q Consensus 180 ~~L~~L~Ls~N~l~ 193 (200)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.0025 Score=52.42 Aligned_cols=88 Identities=26% Similarity=0.325 Sum_probs=57.6
Q ss_pred CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCC-cCCCCCCchhhhhcCCCCCC
Q 037769 105 HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC-VLTIEHRTFDLLASNLTKLS 183 (200)
Q Consensus 105 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N-~l~~~~~~lp~~l~~l~~L~ 183 (200)
.|++|||++..++...+-.-+..+++|+.|.|.++++...+-..+..-.+|+.|+|+.+ .|+ ...+...+..++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t--~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT--ENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc--hhHHHHHHHhhhhHh
Confidence 47777887777764323334556777888888888887777677777777888877754 343 123344566777777
Q ss_pred EEecccccCCc
Q 037769 184 LLYLGATNMSL 194 (200)
Q Consensus 184 ~L~Ls~N~l~g 194 (200)
.|+|+-+.++.
T Consensus 264 ~LNlsWc~l~~ 274 (419)
T KOG2120|consen 264 ELNLSWCFLFT 274 (419)
T ss_pred hcCchHhhccc
Confidence 77777665543
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.37 E-value=0.092 Score=42.92 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=42.9
Q ss_pred CcEEEEEcccCCCCCeec----cCCCccccCCCCCcEEEccCCCCCCC--CCC-------hhccCCCCCCEEeccCCcCC
Q 037769 76 GNVIGLDLYSSCSWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGS--QLS-------PEFGRLKELTYLNLSASNFG 142 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~--~~p-------~~l~~l~~L~~L~Ls~n~l~ 142 (200)
..++.++| ++|.+... +.. .+.+-.+|+..+++.-..... .++ +.+-.+++|+..+||.|.|.
T Consensus 30 d~~~evdL--SGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 30 DELVEVDL--SGNTIGTEAMEELCN--VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred cceeEEec--cCCcccHHHHHHHHH--HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 35667777 77766421 222 334445555555554322110 011 22344566666666666665
Q ss_pred CCCccc----ccCCCCCCEEeccCCcC
Q 037769 143 GLVPYE----MSHSSKLTHLDLSFCVL 165 (200)
Q Consensus 143 ~~~P~~----l~~l~~L~~L~Ls~N~l 165 (200)
-..|+. ++.-+.|.+|.+++|.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 544443 33445566666666655
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.32 E-value=0.38 Score=33.75 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=52.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.+.+ .. .+. .++.. .|.+++.|+.+.+..+ +... -...+..+..|+.+.+.. .+...-...+..+++|
T Consensus 12 ~~l~~i~~--~~-~~~-~I~~~-~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 12 SNLESITF--PN-TIK-KIGEN-AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TT--EEEE--TS-T---EE-TT-TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCEEEE--CC-Cee-EeChh-hccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccccccc
Confidence 36777888 64 444 33331 6777888999998775 5543 234567777889998875 4432223356678889
Q ss_pred CEEeccCCcCCCCCCchh-hhhcCCCCCCEEeccc
Q 037769 156 THLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGA 189 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~ 189 (200)
+.+++..+ ++ .++ ..+.+. .|+.+.+..
T Consensus 84 ~~i~~~~~-~~----~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-IT----EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--B----EEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-cc----EEchhhhcCC-CceEEEECC
Confidence 99988765 41 232 346666 888888765
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.19 E-value=0.68 Score=32.43 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=51.0
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchh-hhhc
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFD-LLAS 177 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp-~~l~ 177 (200)
.|.+.++|+.+.+.. .+... -...+..+++|+.+.+..+ +...-...+..+.+|+.+.+.. .+ ..++ ..|.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~----~~i~~~~F~ 78 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL----KSIGDNAFS 78 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-----EE-TTTTT
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-cc----ccccccccc
Confidence 577788999999875 45543 3456788889999999885 5533234677888899999976 33 1232 3577
Q ss_pred CCCCCCEEecccc
Q 037769 178 NLTKLSLLYLGAT 190 (200)
Q Consensus 178 ~l~~L~~L~Ls~N 190 (200)
.+++|+.+++..+
T Consensus 79 ~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 79 NCTNLKNIDIPSN 91 (129)
T ss_dssp T-TTECEEEETTT
T ss_pred ccccccccccCcc
Confidence 7899999999765
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.17 E-value=0.32 Score=23.93 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=8.1
Q ss_pred CCCCEEecccccCCc
Q 037769 180 TKLSLLYLGATNMSL 194 (200)
Q Consensus 180 ~~L~~L~Ls~N~l~g 194 (200)
++|+.|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456667777666653
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.51 E-value=1 Score=38.79 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=51.0
Q ss_pred cccCCCCCcEEEccCC-CCCCCCCC----hhccCCCCCCEEeccCCc-CCCCCccccc-CCCCCCEEeccCCc-CCCCCC
Q 037769 99 TLFHLSHLQSLNLAYS-NFLGSQLS----PEFGRLKELTYLNLSASN-FGGLVPYEMS-HSSKLTHLDLSFCV-LTIEHR 170 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n-~l~~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~P~~l~-~l~~L~~L~Ls~N~-l~~~~~ 170 (200)
.....+.|+.|+++++ ..... .+ .....+++|+.|+++++. ++...-..+. .+++|+.|.+..+. ++ ..
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt--~~ 285 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITL-SPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT--DE 285 (482)
T ss_pred HHhhCchhheecccCccccccc-chhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc--hh
Confidence 3455677777777763 11111 11 223346777788887776 4432222222 26678887766665 44 23
Q ss_pred chhhhhcCCCCCCEEeccccc
Q 037769 171 TFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 171 ~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
.+-.....++.|++|+++.+.
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHHHHHhcCcccEEeeecCc
Confidence 444455667778888887654
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.22 E-value=0.96 Score=23.04 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=10.0
Q ss_pred CCCCCEEecccccCC
Q 037769 179 LTKLSLLYLGATNMS 193 (200)
Q Consensus 179 l~~L~~L~Ls~N~l~ 193 (200)
+++|+.|+|+.|.|.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777664
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.20 E-value=0.78 Score=23.39 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=8.5
Q ss_pred CCCEEecccccCCcCCC
Q 037769 181 KLSLLYLGATNMSLIKP 197 (200)
Q Consensus 181 ~L~~L~Ls~N~l~g~iP 197 (200)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555555 344
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.15 E-value=1.7 Score=22.34 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=9.5
Q ss_pred CCCCEEecccccCC
Q 037769 180 TKLSLLYLGATNMS 193 (200)
Q Consensus 180 ~~L~~L~Ls~N~l~ 193 (200)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.58 E-value=0.3 Score=38.05 Aligned_cols=82 Identities=21% Similarity=0.132 Sum_probs=39.8
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhcc-CCCCCCEEeccCCc-CCCCCcccccCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFG-RLKELTYLNLSASN-FGGLVPYEMSHSSK 154 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~-l~~~~P~~l~~l~~ 154 (200)
.|+.+|- ++..|...--+ .+.+++.++.|.+.++.--+.---+.++ -.++|+.|+|++|. |+..--..+..+++
T Consensus 102 ~IeaVDA--sds~I~~eGle--~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDA--SDSSIMYEGLE--HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEec--CCchHHHHHHH--HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 4666666 66655533233 4556666666666665532210001111 23567777776553 33222223445555
Q ss_pred CCEEeccC
Q 037769 155 LTHLDLSF 162 (200)
Q Consensus 155 L~~L~Ls~ 162 (200)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 55555443
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.24 E-value=2.2 Score=38.09 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=40.1
Q ss_pred cCCCCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCC--cCCCCCcccccC--CCCCCEEeccCCcCC
Q 037769 101 FHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSAS--NFGGLVPYEMSH--SSKLTHLDLSFCVLT 166 (200)
Q Consensus 101 ~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n--~l~~~~P~~l~~--l~~L~~L~Ls~N~l~ 166 (200)
.+++.+..+.|++|++...+ +..--...++|..|+|++| .+. .-.++.. ...|+.|-+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 35677788888888886531 1111224678899999998 333 1122332 245788888999883
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.93 E-value=0.68 Score=36.15 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=52.4
Q ss_pred CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCc-cccc-CCCCCCEEeccCCc-CCCCCCchhhhhcCCCC
Q 037769 105 HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVP-YEMS-HSSKLTHLDLSFCV-LTIEHRTFDLLASNLTK 181 (200)
Q Consensus 105 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P-~~l~-~l~~L~~L~Ls~N~-l~~~~~~lp~~l~~l~~ 181 (200)
.++.++.++..|... --..+..++.++.|.+.++.--+.-- ..++ -.++|+.|+|++|. || .+. -..+..+++
T Consensus 102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT--~~G-L~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT--DGG-LACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec--hhH-HHHHHHhhh
Confidence 367888888888765 33557778888888888775332100 1122 34789999999874 54 222 245677788
Q ss_pred CCEEeccc
Q 037769 182 LSLLYLGA 189 (200)
Q Consensus 182 L~~L~Ls~ 189 (200)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 88777665
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=54.80 E-value=0.56 Score=41.41 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCEEeccCCcCCCC----CcccccCC-CCCCEEeccCCcCCCC-CCchhhhhcCCCCCCEEecccccCC
Q 037769 131 LTYLNLSASNFGGL----VPYEMSHS-SKLTHLDLSFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 131 L~~L~Ls~n~l~~~----~P~~l~~l-~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++.|++..|.+... +.+.+..+ ..+++++++.|.++.. ...+...+..++.++.+.+++|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554421 11223333 4456666666666321 1123444455556666666666543
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=53.05 E-value=13 Score=32.48 Aligned_cols=112 Identities=19% Similarity=0.061 Sum_probs=62.2
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCC-----cccc
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLV-----PYEM 149 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~-----P~~l 149 (200)
++++.+.+ +++..-+...-...-.+..+|+.+++..+...... +-.--.+++.||.|.++++...... -..-
T Consensus 320 ~~L~~l~l--~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 320 HNLQVLEL--SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CceEEEec--cccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 57788877 66553211110001234667777777776554220 1122235678888888877553211 1122
Q ss_pred cCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 150 SHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
..+..|+.+.|++...+ +...-..+..+++|+.+++.+.+
T Consensus 398 c~~~~l~~lEL~n~p~i--~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLI--TDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccceeeecCCCCc--hHHHHHHHhhCcccceeeeechh
Confidence 34567788888887764 23334456667778777776654
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=50.46 E-value=6 Score=34.01 Aligned_cols=109 Identities=27% Similarity=0.179 Sum_probs=62.6
Q ss_pred CcEEEEEcccCCC-CCeeccC---CCccccCCCCCcEEEccCCC-CCCCCCChhccCCCCCCEEeccCCc-CCCC-Cccc
Q 037769 76 GNVIGLDLYSSCS-WLVGTID---DNSTLFHLSHLQSLNLAYSN-FLGSQLSPEFGRLKELTYLNLSASN-FGGL-VPYE 148 (200)
Q Consensus 76 ~~l~~L~L~~~~n-~l~~~~p---~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~P~~ 148 (200)
..++.|++ +++ ......+ .. ....+..|+.|+++.+. ++...+..-...++.|+.|.+..+. ++.. +-..
T Consensus 214 ~~L~~L~l--~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 214 PNLEELDL--SGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred chhheecc--cCcccccccchhHhhh-hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 56788888 652 1111111 10 34456888999999888 5543122222237899999977776 4432 2223
Q ss_pred ccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecc
Q 037769 149 MSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG 188 (200)
Q Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls 188 (200)
...++.|++|+++.+...+ ...+.....++++|+.|.+.
T Consensus 291 ~~~~~~L~~L~l~~c~~~~-d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLT-DSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHhcCcccEEeeecCccch-HHHHHHHHHhCcchhhhhhh
Confidence 3467889999999876521 12234445556666665543
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=40.70 E-value=1.6 Score=38.53 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=62.4
Q ss_pred EEEEEcccCCCCCeec----cCCCccccCCCCCcEEEccCCCCCCCCCC---hhccCC-CCCCEEeccCCcCCCC----C
Q 037769 78 VIGLDLYSSCSWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGSQLS---PEFGRL-KELTYLNLSASNFGGL----V 145 (200)
Q Consensus 78 l~~L~L~~~~n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~~~p---~~l~~l-~~L~~L~Ls~n~l~~~----~ 145 (200)
+..+.| .+|.+... +.. .+....+|..|++++|.+...... ..+... ..|++|++..|.+++. +
T Consensus 89 l~~L~L--~~~~l~~~~~~~l~~--~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSL--ANNRLGDRGAEELAQ--ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhh--hhCccccchHHHHHH--HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 455666 67766532 222 455567777788888877643111 112222 4466677777766542 3
Q ss_pred cccccCCCCCCEEeccCCcCCC-CCCchhhhhc----CCCCCCEEecccccCC
Q 037769 146 PYEMSHSSKLTHLDLSFCVLTI-EHRTFDLLAS----NLTKLSLLYLGATNMS 193 (200)
Q Consensus 146 P~~l~~l~~L~~L~Ls~N~l~~-~~~~lp~~l~----~l~~L~~L~Ls~N~l~ 193 (200)
...+.....++.++++.|.+.- ..-.++..+. ...++++|+++.|.++
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 3445556677777777777620 0111223333 3567777777777665
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.62 E-value=23 Score=37.85 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=26.1
Q ss_pred EccCCCCCCCCCChhccCCCCCCEEeccCCcCC
Q 037769 110 NLAYSNFLGSQLSPEFGRLKELTYLNLSASNFG 142 (200)
Q Consensus 110 ~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~ 142 (200)
||++|+|+.. -+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstL-p~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTI-EEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCcc-ChHHhccCCCceEEEeeCCccc
Confidence 5788999875 4567778999999999999875
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.52 E-value=32 Score=16.83 Aligned_cols=11 Identities=55% Similarity=0.806 Sum_probs=5.4
Q ss_pred CCCCEEeccCC
Q 037769 153 SKLTHLDLSFC 163 (200)
Q Consensus 153 ~~L~~L~Ls~N 163 (200)
++|+.|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.17 E-value=36 Score=36.51 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=25.8
Q ss_pred EcccCCCCCeeccCCCccccCCCCCcEEEccCCCCC
Q 037769 82 DLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFL 117 (200)
Q Consensus 82 ~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~ 117 (200)
|| ++|.|...-+. .|..+++|+.|+|++|.+.
T Consensus 1 DL--SnN~LstLp~g--~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DI--SNNKISTIEEG--ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CC--CCCcCCccChH--HhccCCCceEEEeeCCccc
Confidence 46 88999844444 7888999999999999875
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.08 E-value=31 Score=31.12 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=42.5
Q ss_pred CCcEEEEEcccCCCCCee--ccCCCccccCCCCCcEEEccCC--CCCCCCCChhccC--CCCCCEEeccCCcCCCC
Q 037769 75 TGNVIGLDLYSSCSWLVG--TIDDNSTLFHLSHLQSLNLAYS--NFLGSQLSPEFGR--LKELTYLNLSASNFGGL 144 (200)
Q Consensus 75 ~~~l~~L~L~~~~n~l~~--~~p~~~~l~~l~~L~~L~L~~n--~l~~~~~p~~l~~--l~~L~~L~Ls~n~l~~~ 144 (200)
.+.|..++| +.|++.. .+.. .-...+.|+.|+|++| .+.. -.++.. ...|+.|.+.+|.+...
T Consensus 217 ~p~i~sl~l--snNrL~~Ld~~ss--lsq~apklk~L~LS~N~~~~~~---~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSL--SNNRLYHLDALSS--LSQIAPKLKTLDLSHNHSKISS---ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccceeeeec--ccchhhchhhhhH--HHHhcchhheeecccchhhhcc---hhhhhhhcCCCHHHeeecCCccccc
Confidence 367899999 9998762 1222 2344688999999999 4332 223333 34588999999988653
Done!