Query 037769
Match_columns 200
No_of_seqs 251 out of 2931
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 6E-28 2.1E-32 198.2 10.8 160 19-199 2-168 (313)
2 4eco_A Uncharacterized protein 99.9 4.2E-24 1.4E-28 190.6 9.5 165 20-198 27-293 (636)
3 3rgz_A Protein brassinosteroid 99.9 2.4E-23 8.1E-28 189.3 12.5 158 17-197 6-195 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 2.3E-22 7.8E-27 184.8 8.7 162 17-198 263-535 (876)
5 4fcg_A Uncharacterized protein 99.8 1.4E-21 4.9E-26 161.3 3.9 129 18-165 22-162 (328)
6 3e6j_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 138.6 13.5 132 55-195 10-150 (229)
7 1w8a_A SLIT protein; signaling 99.7 6E-18 2.1E-22 129.3 10.2 127 64-197 8-143 (192)
8 2o6s_A Variable lymphocyte rec 99.7 2.6E-17 8.9E-22 126.8 13.3 124 64-195 7-139 (208)
9 2v9t_B SLIT homolog 2 protein 99.7 2.1E-17 7.3E-22 128.9 12.6 126 64-197 11-145 (220)
10 2o6r_A Variable lymphocyte rec 99.7 1.9E-17 6.3E-22 124.6 11.5 125 64-197 7-141 (177)
11 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-17 8E-22 128.7 12.2 129 64-199 11-148 (220)
12 3m19_A Variable lymphocyte rec 99.7 1.1E-16 3.6E-21 127.0 12.9 112 77-196 60-171 (251)
13 2o6q_A Variable lymphocyte rec 99.7 3.7E-16 1.3E-20 125.1 13.7 110 76-193 37-146 (270)
14 3rgz_A Protein brassinosteroid 99.7 3.4E-17 1.2E-21 148.8 8.4 108 86-199 616-723 (768)
15 4fcg_A Uncharacterized protein 99.7 9.4E-17 3.2E-21 132.3 9.0 115 76-200 183-297 (328)
16 2wfh_A SLIT homolog 2 protein 99.7 3.7E-16 1.3E-20 119.6 11.5 121 64-194 10-140 (193)
17 2v70_A SLIT-2, SLIT homolog 2 99.7 4.5E-16 1.6E-20 121.3 11.1 113 76-196 57-169 (220)
18 1ogq_A PGIP-2, polygalacturona 99.7 3.3E-17 1.1E-21 134.1 3.9 116 76-199 76-193 (313)
19 2z81_A CD282 antigen, TOLL-lik 99.6 3.9E-16 1.4E-20 135.9 10.2 127 63-197 3-140 (549)
20 3m19_A Variable lymphocyte rec 99.6 2.1E-15 7.1E-20 119.5 12.7 112 76-195 83-194 (251)
21 2je0_A Acidic leucine-rich nuc 99.6 8.4E-16 2.9E-20 112.2 9.5 112 76-196 17-129 (149)
22 3v47_A TOLL-like receptor 5B a 99.6 1.3E-15 4.3E-20 129.8 11.2 115 76-198 30-147 (455)
23 4g8a_A TOLL-like receptor 4; l 99.6 1.3E-15 4.6E-20 133.8 10.8 112 75-194 51-162 (635)
24 2v9t_B SLIT homolog 2 protein 99.6 3.4E-15 1.2E-19 116.4 11.4 111 76-194 56-166 (220)
25 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.1E-20 112.7 9.0 115 76-198 49-164 (168)
26 2o6s_A Variable lymphocyte rec 99.6 5.5E-15 1.9E-19 113.7 12.0 114 76-197 52-165 (208)
27 3rfs_A Internalin B, repeat mo 99.6 7.3E-15 2.5E-19 117.7 13.2 111 76-194 85-195 (272)
28 2z80_A TOLL-like receptor 2, v 99.6 2.6E-15 9E-20 124.3 10.4 129 56-194 22-164 (353)
29 3vq2_A TLR4, TOLL-like recepto 99.6 2.9E-15 1E-19 132.0 11.2 117 76-199 56-172 (606)
30 2xot_A Amphoterin-induced prot 99.6 2.7E-15 9.1E-20 125.0 9.8 123 64-194 18-150 (361)
31 3rfs_A Internalin B, repeat mo 99.6 9E-15 3.1E-19 117.2 12.3 114 76-197 109-222 (272)
32 1w8a_A SLIT protein; signaling 99.6 4.2E-15 1.4E-19 113.4 9.6 110 79-199 11-121 (192)
33 3g39_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 109.3 11.1 105 80-195 13-117 (170)
34 3vq2_A TLR4, TOLL-like recepto 99.6 1E-14 3.5E-19 128.5 12.7 117 75-199 31-148 (606)
35 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 114.1 11.1 112 76-196 64-175 (229)
36 4g8a_A TOLL-like receptor 4; l 99.6 5.4E-15 1.8E-19 130.0 10.2 116 76-198 76-191 (635)
37 1ozn_A Reticulon 4 receptor; N 99.6 1.6E-14 5.4E-19 116.1 11.9 111 76-194 56-167 (285)
38 2z62_A TOLL-like receptor 4, v 99.6 1.2E-14 3.9E-19 116.4 10.7 115 76-197 52-166 (276)
39 2id5_A Lingo-1, leucine rich r 99.6 1.2E-14 4E-19 124.8 11.2 114 76-197 32-145 (477)
40 3v47_A TOLL-like receptor 5B a 99.6 9.7E-15 3.3E-19 124.3 10.5 115 76-198 299-413 (455)
41 2z66_A Variable lymphocyte rec 99.6 9.1E-15 3.1E-19 118.6 9.6 117 76-199 126-242 (306)
42 4b8c_D Glucose-repressible alc 99.6 2.4E-15 8.3E-20 136.1 6.6 111 76-198 224-334 (727)
43 1p9a_G Platelet glycoprotein I 99.6 4.8E-14 1.6E-18 114.2 13.6 113 76-199 77-190 (290)
44 4eco_A Uncharacterized protein 99.6 1.8E-15 6.1E-20 134.9 5.6 113 76-197 206-347 (636)
45 2z62_A TOLL-like receptor 4, v 99.6 1.3E-14 4.3E-19 116.2 9.9 111 76-194 76-191 (276)
46 2r9u_A Variable lymphocyte rec 99.6 2.8E-14 9.7E-19 107.4 11.3 104 79-194 15-119 (174)
47 1ozn_A Reticulon 4 receptor; N 99.6 4.4E-14 1.5E-18 113.5 12.3 115 76-199 80-196 (285)
48 2o6q_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 112.2 12.8 111 76-194 85-195 (270)
49 3t6q_A CD180 antigen; protein- 99.5 3E-14 1E-18 125.5 11.8 112 75-194 32-143 (606)
50 2ell_A Acidic leucine-rich nuc 99.5 1.8E-14 6.3E-19 107.1 8.7 112 76-196 24-136 (168)
51 1ziw_A TOLL-like receptor 3; i 99.5 3.1E-14 1.1E-18 127.1 11.5 114 76-197 25-138 (680)
52 3oja_B Anopheles plasmodium-re 99.5 1.6E-14 5.6E-19 127.7 9.6 110 77-194 76-185 (597)
53 1dce_A Protein (RAB geranylger 99.5 2.8E-14 9.4E-19 125.9 10.8 108 77-197 442-550 (567)
54 2z66_A Variable lymphocyte rec 99.5 1E-14 3.5E-19 118.3 7.5 126 64-196 7-142 (306)
55 2wfh_A SLIT homolog 2 protein 99.5 9.4E-14 3.2E-18 106.1 12.2 107 79-198 13-119 (193)
56 2xot_A Amphoterin-induced prot 99.5 3.7E-14 1.3E-18 118.1 10.3 112 76-197 64-179 (361)
57 4b8c_D Glucose-repressible alc 99.5 6.4E-15 2.2E-19 133.3 6.1 159 19-200 128-312 (727)
58 3j0a_A TOLL-like receptor 5; m 99.5 2.5E-14 8.6E-19 131.2 9.8 96 99-197 68-165 (844)
59 3o6n_A APL1; leucine-rich repe 99.5 2.8E-14 9.7E-19 119.5 8.9 109 77-194 70-179 (390)
60 2ft3_A Biglycan; proteoglycan, 99.5 1E-13 3.6E-18 113.7 12.1 119 64-193 33-160 (332)
61 4ezg_A Putative uncharacterize 99.5 3.4E-14 1.2E-18 108.6 8.2 105 77-193 89-194 (197)
62 3zyi_A Leucine-rich repeat-con 99.5 7.5E-14 2.6E-18 119.3 10.6 96 66-166 56-160 (452)
63 2z81_A CD282 antigen, TOLL-lik 99.5 3.7E-14 1.3E-18 123.4 8.5 117 76-200 50-168 (549)
64 1xku_A Decorin; proteoglycan, 99.5 1.8E-13 6.1E-18 112.2 12.1 119 63-192 30-157 (330)
65 3oja_A Leucine-rich immune mol 99.5 7.3E-14 2.5E-18 120.9 9.5 123 64-199 109-232 (487)
66 2z63_A TOLL-like receptor 4, v 99.5 7.3E-14 2.5E-18 121.8 9.5 115 76-198 421-536 (570)
67 2z63_A TOLL-like receptor 4, v 99.5 9.5E-14 3.3E-18 121.1 10.1 115 76-197 52-166 (570)
68 2o6r_A Variable lymphocyte rec 99.5 6.9E-13 2.4E-17 99.4 12.8 109 78-198 9-117 (177)
69 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.9E-18 104.6 9.5 107 76-194 66-173 (197)
70 3zyj_A Leucine-rich repeat-con 99.5 2.2E-13 7.5E-18 116.0 11.1 96 66-166 45-149 (440)
71 1wwl_A Monocyte differentiatio 99.5 3.8E-14 1.3E-18 115.6 5.9 115 76-197 121-245 (312)
72 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-13 6.4E-18 102.6 9.2 103 77-192 43-152 (176)
73 1p9a_G Platelet glycoprotein I 99.5 3.5E-13 1.2E-17 109.1 11.4 109 76-193 100-208 (290)
74 2xwt_C Thyrotropin receptor; s 99.5 7.1E-14 2.4E-18 109.6 7.0 108 76-193 31-144 (239)
75 3oja_B Anopheles plasmodium-re 99.5 2.6E-13 9E-18 119.9 11.4 138 53-199 8-166 (597)
76 2z7x_B TOLL-like receptor 1, v 99.5 7.1E-14 2.4E-18 121.0 7.6 107 77-193 22-128 (520)
77 1wwl_A Monocyte differentiatio 99.5 6.3E-14 2.2E-18 114.3 6.8 112 76-194 95-215 (312)
78 3j0a_A TOLL-like receptor 5; m 99.5 1.2E-13 4.2E-18 126.6 9.5 124 64-197 14-140 (844)
79 3o6n_A APL1; leucine-rich repe 99.5 3.7E-13 1.3E-17 112.7 11.6 114 76-198 45-159 (390)
80 3g39_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 100.9 10.1 99 64-167 9-116 (170)
81 2je0_A Acidic leucine-rich nuc 99.5 7.7E-14 2.6E-18 101.7 6.3 107 76-189 42-149 (149)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.8E-13 6.2E-18 119.9 9.6 109 76-194 52-160 (562)
83 4ecn_A Leucine-rich repeat pro 99.5 3.9E-14 1.3E-18 130.4 5.5 112 76-197 448-589 (876)
84 2z80_A TOLL-like receptor 2, v 99.5 1.4E-13 4.8E-18 113.9 8.2 114 76-199 76-193 (353)
85 2ifg_A High affinity nerve gro 99.4 3.6E-13 1.2E-17 111.1 10.2 106 64-193 8-116 (347)
86 1ziw_A TOLL-like receptor 3; i 99.4 2.6E-13 8.9E-18 121.1 9.8 109 77-193 50-158 (680)
87 2id5_A Lingo-1, leucine rich r 99.4 2.9E-13 9.8E-18 116.1 9.5 110 76-193 56-165 (477)
88 2z7x_B TOLL-like receptor 1, v 99.4 2.5E-13 8.7E-18 117.6 8.7 107 79-199 3-110 (520)
89 3t6q_A CD180 antigen; protein- 99.4 4E-13 1.4E-17 118.2 9.9 86 76-166 376-462 (606)
90 1xku_A Decorin; proteoglycan, 99.4 7.8E-13 2.7E-17 108.3 9.9 85 105-194 193-277 (330)
91 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-13 7.7E-18 102.1 5.9 109 76-198 19-130 (176)
92 3zyj_A Leucine-rich repeat-con 99.4 1.5E-12 5.2E-17 110.8 10.8 82 76-162 88-169 (440)
93 3o53_A Protein LRIM1, AGAP0063 99.4 9.2E-13 3.2E-17 107.6 9.0 106 77-193 121-227 (317)
94 3cvr_A Invasion plasmid antige 99.4 5.1E-13 1.8E-17 117.8 7.9 115 55-194 34-154 (571)
95 4glp_A Monocyte differentiatio 99.4 2E-13 6.8E-18 111.2 4.8 37 76-116 145-181 (310)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.2E-12 4.2E-17 114.6 10.1 119 76-199 353-491 (562)
97 4glp_A Monocyte differentiatio 99.4 2E-13 6.8E-18 111.2 4.6 118 77-199 92-243 (310)
98 3zyi_A Leucine-rich repeat-con 99.4 2E-12 6.7E-17 110.5 10.9 82 76-162 99-180 (452)
99 2xwt_C Thyrotropin receptor; s 99.4 4.3E-13 1.5E-17 105.2 6.0 111 76-198 55-173 (239)
100 2ft3_A Biglycan; proteoglycan, 99.4 8.2E-13 2.8E-17 108.4 7.4 86 104-194 193-278 (332)
101 1dce_A Protein (RAB geranylger 99.4 1.9E-12 6.5E-17 114.1 9.8 104 76-187 463-567 (567)
102 3o53_A Protein LRIM1, AGAP0063 99.3 1E-12 3.5E-17 107.4 6.9 106 76-193 144-250 (317)
103 2r9u_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 94.2 10.2 86 76-166 33-118 (174)
104 1h6u_A Internalin H; cell adhe 99.3 8.7E-12 3E-16 101.6 10.6 102 76-193 85-186 (308)
105 3oja_A Leucine-rich immune mol 99.3 1.8E-12 6.2E-17 112.1 6.9 106 76-193 144-250 (487)
106 1h6u_A Internalin H; cell adhe 99.3 8.8E-12 3E-16 101.6 10.4 103 76-194 107-209 (308)
107 1xeu_A Internalin C; cellular 99.3 1.3E-11 4.5E-16 98.5 10.9 103 76-195 63-165 (263)
108 1h6t_A Internalin B; cell adhe 99.3 1.1E-11 3.7E-16 100.3 10.3 102 77-194 91-192 (291)
109 1h6t_A Internalin B; cell adhe 99.3 1E-11 3.5E-16 100.5 10.1 103 76-194 112-214 (291)
110 1xeu_A Internalin C; cellular 99.3 1.7E-11 5.7E-16 97.9 10.6 103 76-195 85-187 (263)
111 4fmz_A Internalin; leucine ric 99.3 2.4E-11 8.2E-16 99.8 10.7 108 76-197 221-328 (347)
112 4fmz_A Internalin; leucine ric 99.3 1.5E-11 5.1E-16 101.0 8.7 105 75-193 242-346 (347)
113 3bz5_A Internalin-J, INLJ; leu 99.2 4.1E-11 1.4E-15 102.9 10.8 101 76-196 64-164 (457)
114 1ds9_A Outer arm dynein; leuci 99.2 5.3E-14 1.8E-18 107.5 -6.5 109 76-198 48-158 (198)
115 1m9s_A Internalin B; cell inva 99.2 5.6E-11 1.9E-15 105.5 11.4 85 100-194 127-211 (605)
116 3cvr_A Invasion plasmid antige 99.2 9.6E-12 3.3E-16 109.7 5.7 82 104-198 160-248 (571)
117 1m9s_A Internalin B; cell inva 99.2 8.3E-11 2.9E-15 104.4 11.7 102 77-194 88-189 (605)
118 2ast_B S-phase kinase-associat 99.2 8.6E-13 2.9E-17 108.0 -1.6 109 77-191 119-233 (336)
119 2ast_B S-phase kinase-associat 99.2 3.5E-12 1.2E-16 104.3 1.9 110 77-193 71-182 (336)
120 1o6v_A Internalin A; bacterial 99.2 9.5E-11 3.2E-15 100.4 10.7 96 77-188 69-164 (466)
121 1o6v_A Internalin A; bacterial 99.2 7.9E-11 2.7E-15 100.9 10.1 60 101-165 284-343 (466)
122 2ifg_A High affinity nerve gro 99.2 5.5E-11 1.9E-15 97.9 8.8 85 107-198 11-97 (347)
123 2ca6_A RAN GTPase-activating p 99.2 4.6E-12 1.6E-16 105.9 2.1 115 77-196 188-319 (386)
124 1jl5_A Outer protein YOPM; leu 99.2 3.9E-11 1.3E-15 103.0 7.4 87 104-200 317-418 (454)
125 4ay9_X Follicle-stimulating ho 99.2 4E-11 1.4E-15 99.2 7.1 129 64-198 9-171 (350)
126 3g06_A SSPH2 (leucine-rich rep 99.2 2.1E-11 7.3E-16 108.5 5.4 97 54-166 12-114 (622)
127 3bz5_A Internalin-J, INLJ; leu 99.1 3.3E-10 1.1E-14 97.2 11.8 83 100-195 166-248 (457)
128 1ds9_A Outer arm dynein; leuci 99.1 2.8E-13 9.7E-18 103.5 -7.0 105 77-194 19-129 (198)
129 3g06_A SSPH2 (leucine-rich rep 99.1 1.1E-10 3.7E-15 104.0 8.5 82 104-198 221-302 (622)
130 2ca6_A RAN GTPase-activating p 99.1 3E-11 1E-15 100.9 1.7 115 76-194 159-288 (386)
131 1jl5_A Outer protein YOPM; leu 99.1 7.1E-10 2.4E-14 95.1 10.2 107 76-197 131-253 (454)
132 4ay9_X Follicle-stimulating ho 99.0 5.5E-10 1.9E-14 92.3 7.9 104 80-195 13-119 (350)
133 3goz_A Leucine-rich repeat-con 99.0 5.6E-11 1.9E-15 98.7 1.7 116 77-197 52-184 (362)
134 3goz_A Leucine-rich repeat-con 99.0 7.7E-11 2.6E-15 97.9 2.3 114 76-194 22-152 (362)
135 1z7x_W Ribonuclease inhibitor; 98.8 1.9E-10 6.6E-15 97.7 -1.4 90 105-194 314-412 (461)
136 3rw6_A Nuclear RNA export fact 98.8 1.9E-10 6.4E-15 92.3 -2.2 68 127-197 168-237 (267)
137 1z7x_W Ribonuclease inhibitor; 98.8 2.3E-10 8E-15 97.2 -3.2 110 77-194 257-384 (461)
138 3un9_A NLR family member X1; l 98.8 9.7E-10 3.3E-14 92.0 0.3 91 103-193 154-252 (372)
139 3un9_A NLR family member X1; l 98.6 2.6E-09 8.8E-14 89.4 -0.6 115 76-194 101-225 (372)
140 3ogk_B Coronatine-insensitive 98.6 4.3E-09 1.5E-13 92.1 -0.8 93 100-195 432-528 (592)
141 3rw6_A Nuclear RNA export fact 98.6 5E-08 1.7E-12 78.1 4.9 81 101-186 167-257 (267)
142 1io0_A Tropomodulin; LRR prote 98.5 2.8E-08 9.7E-13 75.0 1.6 114 76-193 36-164 (185)
143 3sb4_A Hypothetical leucine ri 98.4 7.5E-07 2.6E-11 72.7 7.3 101 76-187 226-328 (329)
144 3ogk_B Coronatine-insensitive 98.4 2.4E-07 8.2E-12 80.9 4.6 63 76-142 164-233 (592)
145 2p1m_B Transport inhibitor res 98.3 7.5E-08 2.6E-12 84.1 -0.8 109 76-190 105-221 (594)
146 2p1m_B Transport inhibitor res 98.2 5.2E-08 1.8E-12 85.1 -2.7 90 100-193 428-519 (594)
147 1io0_A Tropomodulin; LRR prote 98.2 4.1E-07 1.4E-11 68.5 1.3 96 99-194 31-137 (185)
148 3sb4_A Hypothetical leucine ri 98.0 9.3E-06 3.2E-10 66.1 6.1 88 103-198 225-314 (329)
149 2ra8_A Uncharacterized protein 97.9 1.4E-06 4.7E-11 72.7 -0.0 67 127-193 250-320 (362)
150 3e4g_A ATP synthase subunit S, 97.8 7.8E-06 2.7E-10 61.2 3.0 84 76-164 61-150 (176)
151 3e4g_A ATP synthase subunit S, 97.7 7.1E-06 2.4E-10 61.5 1.3 84 104-191 61-150 (176)
152 2ra8_A Uncharacterized protein 97.4 9.2E-05 3.2E-09 61.5 3.5 108 76-194 172-293 (362)
153 4fdw_A Leucine rich hypothetic 97.2 0.00084 2.9E-08 56.4 7.7 87 99-193 266-358 (401)
154 3rfe_A Platelet glycoprotein I 97.2 0.00092 3.2E-08 47.2 6.2 56 80-142 12-68 (130)
155 4fdw_A Leucine rich hypothetic 96.9 0.002 6.8E-08 54.1 6.9 107 76-192 271-382 (401)
156 3rfe_A Platelet glycoprotein I 96.9 0.0023 7.9E-08 45.1 6.2 55 107-165 11-67 (130)
157 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00073 2.5E-08 51.4 3.4 113 76-192 41-169 (197)
158 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00064 2.2E-08 51.7 1.9 92 99-190 36-136 (197)
159 4gt6_A Cell surface protein; l 95.8 0.028 9.7E-07 46.5 7.9 85 99-191 283-368 (394)
160 4gt6_A Cell surface protein; l 95.7 0.056 1.9E-06 44.7 9.3 85 99-192 306-390 (394)
161 4h09_A Hypothetical leucine ri 95.2 0.053 1.8E-06 44.4 7.2 85 99-190 258-343 (379)
162 4fs7_A Uncharacterized protein 95.0 0.039 1.3E-06 45.6 6.1 84 99-190 292-376 (394)
163 4fs7_A Uncharacterized protein 94.9 0.048 1.6E-06 45.1 6.3 82 99-190 271-353 (394)
164 4h09_A Hypothetical leucine ri 92.2 0.44 1.5E-05 38.8 7.5 85 99-190 235-320 (379)
165 3ox7_P MH027; urokinase-type p 35.7 8.9 0.0003 17.5 0.2 10 61-70 5-14 (23)
166 2lz0_A Uncharacterized protein 30.7 94 0.0032 20.0 4.8 38 99-138 15-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=6e-28 Score=198.20 Aligned_cols=160 Identities=33% Similarity=0.499 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcccCCCCCee--
Q 037769 19 SCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCS--WDGVTCDNVT--GNVIGLDLYSSCSWLVG-- 92 (200)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~l~~L~L~~~~n~l~~-- 92 (200)
.|.++|++||++||..+.++ ..+.+|..+.+||. |.||.|+... ++|+.|++ ++|.+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~-------------~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L--~~~~l~~~~ 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP-------------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDL--SGLNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC-------------GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEE--ECCCCSSCE
T ss_pred CCCHHHHHHHHHHHHhcCCc-------------ccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEEC--CCCCccCCc
Confidence 59999999999999999654 24678987788998 9999998654 79999999 9999998
Q ss_pred ccCCCccccCCCCCcEEEccC-CCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCc
Q 037769 93 TIDDNSTLFHLSHLQSLNLAY-SNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRT 171 (200)
Q Consensus 93 ~~p~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~ 171 (200)
.+|. .+.++++|++|++++ |.+.+. +|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++ +.
T Consensus 67 ~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~ 140 (313)
T 1ogq_A 67 PIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GT 140 (313)
T ss_dssp ECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---SC
T ss_pred ccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---Cc
Confidence 8888 899999999999995 999988 8999999999999999999999889999999999999999999994 56
Q ss_pred hhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 172 FDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 172 lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
+|..+..+++|++|++++|.++|.+|..
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHH
Confidence 7888889999999999999998888864
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=4.2e-24 Score=190.64 Aligned_cols=165 Identities=19% Similarity=0.211 Sum_probs=137.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEEcccCCCCCeeccCC
Q 037769 20 CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSW---DGVTCDNVTGNVIGLDLYSSCSWLVGTIDD 96 (200)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~w---~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~ 96 (200)
....|++||.+++.++.++ . |...- ..+....+|+.+.++|.| .||+|+.. ++|+.|+| +++++.|.+|+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~-~-w~~~~--~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L--~~~~l~g~lp~ 99 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGK-N-WSQQG--FGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSL--EGFGASGRVPD 99 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGG-G-CCCCC--------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEEC--TTSCCEEEECG
T ss_pred hHHHHHHHHHHHHHHcCCC-C-cccCC--cCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEe--cCcccCCcCCh
Confidence 4457899999999998876 3 31000 000123479988899999 99999875 89999999 99999999999
Q ss_pred CccccCCCCCcEEEccCCCC------------------------------------------------------------
Q 037769 97 NSTLFHLSHLQSLNLAYSNF------------------------------------------------------------ 116 (200)
Q Consensus 97 ~~~l~~l~~L~~L~L~~n~l------------------------------------------------------------ 116 (200)
.++++++|++|+|++|.+
T Consensus 100 --~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 100 --AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp --GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred --HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 999999999999999854
Q ss_pred ------------------CCCCCChhccCCCCCCEEeccCCcCCCC-----------------Cccccc--CCCCCCEEe
Q 037769 117 ------------------LGSQLSPEFGRLKELTYLNLSASNFGGL-----------------VPYEMS--HSSKLTHLD 159 (200)
Q Consensus 117 ------------------~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~P~~l~--~l~~L~~L~ 159 (200)
++ +|..++.+++|++|+|++|.+++. +|..++ ++++|++|+
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 22 678899999999999999999985 999998 999999999
Q ss_pred ccCCcCCCCCCchhhhhcCCCCCCEEeccccc-CCc-CCCC
Q 037769 160 LSFCVLTIEHRTFDLLASNLTKLSLLYLGATN-MSL-IKPF 198 (200)
Q Consensus 160 Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~-l~g-~iP~ 198 (200)
|++|.+ .+.+|..++++++|++|++++|+ ++| .+|.
T Consensus 256 L~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 256 VYNCPN---LTKLPTFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp EECCTT---CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred ecCCcC---CccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence 999999 46788899999999999999998 888 7774
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.4e-23 Score=189.26 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=119.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcccCCCCCeec---
Q 037769 17 THSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGT--- 93 (200)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~--- 93 (200)
...+.++|++||++||+.+.++ ..+.+|..+.+||.|.||+|+ .++|+.|+| +++.+.|.
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~-------------~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L--~~~~l~g~~~~ 68 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDK-------------NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDL--SSKPLNVGFSA 68 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCT-------------TSSTTCCTTSCGGGSTTEEEE--TTEEEEEEC--TTSCCCEEHHH
T ss_pred cccCCHHHHHHHHHHHhhCCCc-------------ccccCCCCCCCCcCCcceEEC--CCcEEEEEC--CCCCcCCccCc
Confidence 3455778999999999999855 257889877899999999998 489999999 99998876
Q ss_pred cC-----------------------CCccccCCCCCcEEEccCCCCCCCCCCh--hccCCCCCCEEeccCCcCCCCCccc
Q 037769 94 ID-----------------------DNSTLFHLSHLQSLNLAYSNFLGSQLSP--EFGRLKELTYLNLSASNFGGLVPYE 148 (200)
Q Consensus 94 ~p-----------------------~~~~l~~l~~L~~L~L~~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~P~~ 148 (200)
++ . .+..+++|++|+|++|.+++. +|. .++.+++|++|++++|.+.+.+|..
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 145 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCC--CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCch--hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence 43 3 577778888888888888876 777 7888888888888888888777765
Q ss_pred c-cCCCCCCEEeccCCcCCCCCCchhhh---hcCCCCCCEEecccccCCcCCC
Q 037769 149 M-SHSSKLTHLDLSFCVLTIEHRTFDLL---ASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 149 l-~~l~~L~~L~Ls~N~l~~~~~~lp~~---l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+ ..+++|++|+|++|.++ +..|.. +.++++|++|++++|.+++.+|
T Consensus 146 ~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 146 GGLKLNSLEVLDLSANSIS---GANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp SCCCCTTCSEEECCSSCCE---EETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred HhccCCCCCEEECCCCccC---CcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 5 67788888888888874 334443 4555555555555555554443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2.3e-22 Score=184.84 Aligned_cols=162 Identities=22% Similarity=0.238 Sum_probs=132.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCC--ccc------------cceEecCCCCcEEEEE
Q 037769 17 THSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDC--CSW------------DGVTCDNVTGNVIGLD 82 (200)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--c~w------------~gv~c~~~~~~l~~L~ 82 (200)
.+.+..+|+.||++||.++.++ +| .....|. ..++ |.| .||.|+. .++|+.|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~--~W---------~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~ 329 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK--NW---------RYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLS 329 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG--GC---------CCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred ccccchHHHHHHHHHHHHcCCC--CC---------CcCCCcc-cccCCccccccccccccccCcCceEecC-CCCEEEEE
Confidence 3455678999999999998654 21 1111121 1245 999 9999987 48999999
Q ss_pred cccCCCCCeeccCCCccccCCCCCcEEEc-cCCCCCCC------------------------------------------
Q 037769 83 LYSSCSWLVGTIDDNSTLFHLSHLQSLNL-AYSNFLGS------------------------------------------ 119 (200)
Q Consensus 83 L~~~~n~l~~~~p~~~~l~~l~~L~~L~L-~~n~l~~~------------------------------------------ 119 (200)
| +++++.|.+|+ .+++|++|+.|+| ++|.+.|.
T Consensus 330 L--s~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 330 L--AGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp C--TTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred C--ccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 9 99999999999 9999999999999 66643221
Q ss_pred ---------------------------------CCChhccCCCCCCEEeccCCcCCC-----------------CCcccc
Q 037769 120 ---------------------------------QLSPEFGRLKELTYLNLSASNFGG-----------------LVPYEM 149 (200)
Q Consensus 120 ---------------------------------~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~P~~l 149 (200)
.+|..++.+++|+.|+|++|.+++ .+|..+
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence 067788999999999999999998 389988
Q ss_pred c--CCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc-CCc-CCCC
Q 037769 150 S--HSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN-MSL-IKPF 198 (200)
Q Consensus 150 ~--~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~-l~g-~iP~ 198 (200)
+ ++++|++|+|++|++ .+.+|..++++++|++|+|++|+ ++| .||.
T Consensus 486 ~f~~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPN---MTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp CGGGCTTCCEEEEESCTT---CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred hhccCCCCCEEECcCCCC---CccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence 8 999999999999998 46788999999999999999998 888 7774
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.4e-21 Score=161.30 Aligned_cols=129 Identities=18% Similarity=0.289 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCC----CCCCCCccccceEecC--------CCCcEEEEEccc
Q 037769 18 HSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSW----TEGTDCCSWDGVTCDN--------VTGNVIGLDLYS 85 (200)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~l~~L~L~~ 85 (200)
..+..+|+.||++||..+..+ .. .+...| ....++|.|.|+.|.. ...+|+.|++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~-~~----------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L-- 88 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNAD-RN----------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL-- 88 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHC-CT----------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEE--
T ss_pred cccCchHHHHHHHHHHhccCC-ch----------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEc--
Confidence 345567899999999988544 21 245678 3467899999999942 2367888888
Q ss_pred CCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769 86 SCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL 165 (200)
Q Consensus 86 ~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l 165 (200)
++|.+. .+|+ .+..+++|++|++++|.++ . +|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|++
T Consensus 89 ~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 89 RSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp ESSCCS-SCCS--CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred cCCCch-hcCh--hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 888877 6676 6777777888888777777 3 6777777777777777777777 6677777777777777777655
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=5.8e-19 Score=138.58 Aligned_cols=132 Identities=21% Similarity=0.169 Sum_probs=112.4
Q ss_pred CCCCCCCCCccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc
Q 037769 55 NSWTEGTDCCSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF 125 (200)
Q Consensus 55 ~~W~~~~~~c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l 125 (200)
..|......|+|.+|.|... ..+++.|+| ++|.+.+..+. .+..+++|++|+|++|.+... .+..+
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i-~~~~~ 84 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYL--HDNQITKLEPG--VFDSLINLKELYLGSNQLGAL-PVGVF 84 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTT
T ss_pred hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEc--CCCccCccCHH--HhhCccCCcEEECCCCCCCCc-Chhhc
Confidence 34556678899999999752 357899999 99999987787 899999999999999999874 44567
Q ss_pred cCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769 126 GRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~ 195 (200)
..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc----ccCcccccCCCCCEEECCCCcCCcc
Confidence 89999999999999999666666889999999999999994 6788889999999999999999853
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=6e-18 Score=129.31 Aligned_cols=127 Identities=18% Similarity=0.146 Sum_probs=110.1
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|..+.|... ...++.|++ ++|.+.+..+.. .+..+++|++|++++|.+++. .|..+..+++|++|
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l--~~n~i~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLL--NDNELGRISSDG-LFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQEL 83 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEEC--CSCCCCSBCCSC-SGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEE
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEEC--CCCcCCccCCcc-ccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEE
Confidence 77888888642 247899999 999998655531 388999999999999999987 78899999999999
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+|++|.+++..|..+..+++|++|+|++|+++ +..|..+..+++|++|+|++|++.+..+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQIS---CVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCC---EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCC---eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999877778999999999999999995 4557789999999999999999987654
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.6e-17 Score=126.76 Aligned_cols=124 Identities=26% Similarity=0.275 Sum_probs=94.4
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|.+|.|... ..+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDL--ETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYL 81 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEc--CCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEE
Confidence 78999998642 246889999 99998865555 678888999999999988864 44456788888888
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~ 195 (200)
++++|.+++..+..+..+++|++|++++|+++ ...+..+..+++|++|++++|.+++.
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ---SLPDGVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCcCc---ccCHhHhccCCcCCEEECCCCcccee
Confidence 88888888555556788888888888888884 22334467778888888888887753
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.1e-17 Score=128.89 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=104.1
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|..+.|... ...++.|++ ++|.+.+..+. .+..+++|++|+|++|.+++. .|..+..+++|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l--~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRL--EQNTIKVIPPG--AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSL 85 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEEC--CSSCCCEECTT--SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEE
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEEC--CCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEE
Confidence 77888888642 247899999 99999876666 788899999999999999886 68889999999999
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+|++|.++...+..+..+++|++|+|++|+++ ...|..|..+++|++|+|++|+|++..|
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKIN---CLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCC---EeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 99999998544445788999999999999994 4446778889999999999999986544
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=1.9e-17 Score=124.60 Aligned_cols=125 Identities=21% Similarity=0.274 Sum_probs=106.3
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|.++.|... ...++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|+.|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLEL--ESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTIL 81 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEe--CCCcccEeCHH--HhcCcccccEEECCCCcceEe-ChhHccCCCccCEE
Confidence 78999999642 257899999 99999866555 678999999999999999975 55567899999999
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCcCCC
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|++++|++.+..|
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcce----EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999999766667889999999999999995 3444 46889999999999999988654
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=128.66 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=89.0
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|..+.|.+. ...++.|++ ++|.+.+..+.. .+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L--~~N~l~~~~~~~-~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L 86 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRL--NNNEFTVLEATG-IFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEI 86 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEEC--CSSCCCEECCCC-CGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEE
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEc--CCCcCCccCchh-hhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEE
Confidence 56777777532 235677788 888777654431 467777788888888777764 44567777777777
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
+|++|.+++..|..+..+++|++|+|++|+++ ...|..+..+++|++|+|++|+|++..|..
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRIT---CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC---CBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCC---eECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 77777777666666777777777777777773 334566777777777777777777655543
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.1e-16 Score=126.95 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=59.9
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus 60 ~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 60 KLTWLNL--DYNQLQTLSAG--VFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp TCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCEEEC--CCCcCCccCHh--HhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence 4455555 55555444333 445555555555555555543 334445555555555555555543333445556666
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
+|+|++|+++ ...+..+..+++|++|+|++|++++..
T Consensus 135 ~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 135 ELRLNTNQLQ---SIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp EEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEECcCCcCC---ccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 6666666653 122234666667777777777766533
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.7e-16 Score=125.06 Aligned_cols=110 Identities=23% Similarity=0.218 Sum_probs=67.2
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.|++ ++|.+.+..+. .+.++++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 37 ~~l~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDL--QSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp TTCSEEEC--CSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCEEEC--cCCCCCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 35677788 77777755555 577777777777777777653 33334667777777777777764444455666666
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++|++++|+++ ...+..+..+++|++|++++|.+.
T Consensus 112 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 112 AELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCccC---eeCHHHhCcCcCCCEEECCCCcCC
Confidence 66666666663 222233445555555555555544
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=3.4e-17 Score=148.80 Aligned_cols=108 Identities=26% Similarity=0.284 Sum_probs=102.6
Q ss_pred CCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769 86 SCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL 165 (200)
Q Consensus 86 ~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l 165 (200)
..|.+.|.+|. .+..++.|++|++++|.+++. +|..++.++.|+.|+|++|.++|.+|..++.+++|+.|+|++|++
T Consensus 616 ~~~~~~g~~~~--~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 616 TSRVYGGHTSP--TFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp TSCEEEEECCC--SCSSSBCCCEEECCSSCCBSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccceecccCch--hhhccccccEEECcCCccccc-CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 56788899998 899999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 166 TIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 166 ~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
+ +.+|..++.++.|++|++++|+++|.||..
T Consensus 693 ~---g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 693 D---GRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp E---ECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred c---CcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 4 678999999999999999999999999963
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=9.4e-17 Score=132.34 Aligned_cols=115 Identities=23% Similarity=0.206 Sum_probs=96.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+. .+|. .+..+++|++|++++|.+++ +|+.+..+++|++|++++|.+.+.+|..++.+++|
T Consensus 183 ~~L~~L~L--~~n~l~-~lp~--~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 183 VNLQSLRL--EWTGIR-SLPA--SIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp TTCCEEEE--EEECCC-CCCG--GGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred CCCCEEEC--cCCCcC-cchH--hhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 45677777 777777 6676 68888888888888888886 67778888889999999988888888888888999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 200 (200)
++|+|++|++ .+.+|..+.++++|++|+|++|++.|.+|..+
T Consensus 256 ~~L~L~~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 256 KRLILKDCSN---LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CEEECTTCTT---CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CEEECCCCCc---hhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 9999998888 46788888999999999999999999998753
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=119.58 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=104.9
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|..+.|.+. ...++.|++ ++|.+. .+|. .+..+++|++|+|++|.+++. .+..|..+++|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L--~~n~i~-~ip~--~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYL--DGNQFT-LVPK--ELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTL 83 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEEC--CSSCCC-SCCG--GGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEEC--CCCcCc-hhHH--HhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEE
Confidence 56777777542 357899999 999998 7777 899999999999999999986 66789999999999
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCc
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g 194 (200)
+|++|.+++..|..+..+++|++|+|++|+++ .+|. .+..+++|+.|+|++|++..
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS----VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC----BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCC----eeChhhhhcCccccEEEeCCCCeec
Confidence 99999999777778999999999999999995 3444 58899999999999998864
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=121.32 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=102.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+.++++|++|+|++|.+++. .+..+..+++|++|+|++|.+++..|..+..+++|
T Consensus 57 ~~L~~L~L--~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 57 PQLRKINF--SNNKITDIEEG--AFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred CCCCEEEC--CCCcCCEECHH--HhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 67999999 99999987777 799999999999999999986 66679999999999999999998888999999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
++|+|++|+++ ...|..+..+++|+.|+|++|++.+..
T Consensus 132 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 132 RLLSLYDNQIT---TVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SEEECTTSCCC---CBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CEEECCCCcCC---EECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999999994 445788999999999999999987653
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=3.3e-17 Score=134.13 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=100.9
Q ss_pred CcEEEEEcccCC-CCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSC-SWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~-n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++ |.+.+.+|. .+.++++|++|++++|.+++. +|..+..+++|++|++++|.+++.+|..+..+++
T Consensus 76 ~~L~~L~L--~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 76 PYLNFLYI--GGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp TTCSEEEE--EEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCeeeC--CCCCcccccCCh--hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 57889999 85 888888888 889999999999999999877 8888999999999999999999888988999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCC-CCCEEecccccCCcCCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLT-KLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~-~L~~L~Ls~N~l~g~iP~~ 199 (200)
|++|++++|+++ +.+|..+..++ +|++|++++|.++|.+|..
T Consensus 151 L~~L~L~~N~l~---~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 151 LVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp CCEEECCSSCCE---EECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred CCeEECcCCccc---CcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 999999999984 56788888887 8899999999888887754
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=3.9e-16 Score=135.88 Aligned_cols=127 Identities=27% Similarity=0.217 Sum_probs=98.1
Q ss_pred CccccceEecCC-----------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCC
Q 037769 63 CCSWDGVTCDNV-----------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKEL 131 (200)
Q Consensus 63 ~c~w~gv~c~~~-----------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L 131 (200)
.|.|.|+ |+.. ..++++|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..+..+++|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 76 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDL--SFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSL 76 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEEC--CSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEEC--cCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccC
Confidence 4778777 6521 247889999 99998877777 788899999999999998876 66778888999
Q ss_pred CEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 132 TYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 132 ~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|++++|.+++..|..++.+++|++|++++|.+++ ..+|..++++++|++|++++|.+.+.+|
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccc--cchhhhhhccCCccEEECCCCccccccC
Confidence 999999999887666678888899999999888852 1345567777777777777777555555
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2.1e-15 Score=119.45 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=75.9
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|+.|+|++|.+++..+..+..+++|
T Consensus 83 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 83 TELGTLGL--ANNQLASLPLG--VFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCEEEC--CCCcccccChh--HhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 46777777 77777755555 566777777777777777764 34445677777777777777775444467777777
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~ 195 (200)
++|+|++|+++ ...+..+..+++|++|++++|++.+.
T Consensus 158 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 QTLSLSTNQLQ---SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CEEECCCCcCC---ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777777773 22334566777777777777777654
No 21
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=8.4e-16 Score=112.24 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=96.1
Q ss_pred CcEEEEEcccCCCCCe-eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLV-GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~-~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+. +.+|. .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+|..+..+++
T Consensus 17 ~~l~~L~l--~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVL--DNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEEC--TTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEc--cCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 57899999 999998 78888 78999999999999999986 4 67889999999999999999778888888999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
|++|++++|++++ ...+..+..+++|++|++++|++++..
T Consensus 90 L~~L~ls~N~i~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 90 LTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CCEEECTTSCCCS--HHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CCEEECCCCcCCC--hHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 9999999999942 123477899999999999999998643
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=1.3e-15 Score=129.80 Aligned_cols=115 Identities=24% Similarity=0.224 Sum_probs=88.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCC-ChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL-SPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.++++|++ ++|.+.+..+. .+.++++|++|++++|.+.+. + +..+..+++|++|++++|.+++..|..++++++
T Consensus 30 ~~l~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDL--SLNSIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEEC--CSSCCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEe--cCCccCcCChh--HhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 56889999 99988877777 788888888888888888754 4 456788888888888888888777778888888
Q ss_pred CCEEeccCCcCCCCCCchhhh--hcCCCCCCEEecccccCCcCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLL--ASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~--l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
|++|++++|+++ +.+|.. ++.+++|++|++++|.+.+..|.
T Consensus 105 L~~L~L~~n~l~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 105 LEVLTLTQCNLD---GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp CCEEECTTSCCB---THHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred CCEEeCCCCCCC---ccccCcccccCcccCCEEECCCCccCccCcc
Confidence 888888888884 334443 67777777777777777765554
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=1.3e-15 Score=133.81 Aligned_cols=112 Identities=21% Similarity=0.131 Sum_probs=90.0
Q ss_pred CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
+..+++|+| ++|.|++..+. .|.++++|++|+|++|.+++. .|..|..+++|++|+|++|++++..+..|.++++
T Consensus 51 p~~~~~LdL--s~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDL--SFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEe--eCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 357899999 99999966666 789999999999999999875 5567889999999999999998655567888999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
|++|+|++|++++ ..+..|+++++|++|++++|.+.+
T Consensus 126 L~~L~Ls~N~l~~---l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 126 LQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp CCEEECTTSCCCC---STTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCC---CChhhhhcCcccCeeccccCcccc
Confidence 9999999998842 223347777888888888887764
No 24
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=3.4e-15 Score=116.36 Aligned_cols=111 Identities=21% Similarity=0.108 Sum_probs=98.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|+| ++|.+.+..+. .|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+++..|..+..+++|
T Consensus 56 ~~L~~L~L--s~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 56 KKLRRIDL--SNNQISELAPD--AFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp TTCCEEEC--CSSCCCEECTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEC--CCCcCCCcCHH--HhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 58999999 99999988788 899999999999999999974 44457889999999999999998888899999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++|+|++|+++ ...+..+..+++|+.|+|++|++..
T Consensus 131 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 131 NLLSLYDNKLQ---TIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcCC---EECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999995 3334568899999999999998853
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.8e-15 Score=112.66 Aligned_cols=115 Identities=24% Similarity=0.196 Sum_probs=85.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-CcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+. . .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++. .+..+..+++
T Consensus 49 ~~L~~L~l--~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 49 VNLEFLSL--INVGLISV--S--NLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGCCEEEE--ESSCCCCC--S--SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred CCCCEEeC--cCCCCCCh--h--hhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 56888888 88888754 4 578888888888888888876 677777788888888888888753 1267788888
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
|++|++++|.+++........+..+++|++|++++|.+. .+|.
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 888888888884211100136788888888888888877 4664
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=5.5e-15 Score=113.67 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=94.7
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++++|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 52 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 52 TSLTQLYL--GGNKLQSLPNG--VFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTCSEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCcEEEC--CCCccCccChh--hcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 57999999 99999855555 678899999999999999975 45557899999999999999996666668899999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|++++|+++ ...+..+..+++|++|++++|.+.+..|
T Consensus 127 ~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 127 KDLRLYQNQLK---SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CEEECCCCccc---eeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999999995 3333457889999999999988877665
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=7.3e-15 Score=117.70 Aligned_cols=111 Identities=26% Similarity=0.266 Sum_probs=58.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 85 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 85 TNLTYLIL--TGNQLQSLPNG--VFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp TTCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEC--CCCccCccChh--HhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 35566666 66655544444 455556666666666665543 33335555556666665555554434444555555
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++|++++|+++ ...+..++.+++|++|++++|++++
T Consensus 160 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 160 TELDLSYNQLQ---SLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CEEECCCCCcC---ccCHHHhcCCccCCEEECCCCcCCc
Confidence 55555555553 1222334455555555555555554
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=124.32 Aligned_cols=129 Identities=28% Similarity=0.308 Sum_probs=96.7
Q ss_pred CCCCCCCCccccceEecCC-----------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh
Q 037769 56 SWTEGTDCCSWDGVTCDNV-----------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE 124 (200)
Q Consensus 56 ~W~~~~~~c~w~gv~c~~~-----------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~ 124 (200)
.|......|.|.|+ |+.. ..++++|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~ 95 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDL--SNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDS 95 (353)
T ss_dssp -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTT
T ss_pred CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEEC--CCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhh
Confidence 35455667899887 6421 247899999 99999876665 688899999999999999875 5677
Q ss_pred ccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhh--hhcCCCCCCEEeccccc-CCc
Q 037769 125 FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATN-MSL 194 (200)
Q Consensus 125 l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~-l~g 194 (200)
+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|++++|+ +.+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK----TLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS----SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc----ccCchhhhccCCCCcEEECCCCccccc
Confidence 888999999999999998544445888899999999999884 3444 56777888888888874 443
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=2.9e-15 Score=131.95 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=76.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++++|++ ++|.+.+..+. .|.++++|++|++++|.+++. .|..+..+++|++|++++|.+.+..|..++.+++|
T Consensus 56 ~~L~~L~L--s~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 56 SELQWLDL--SRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred ccCcEEeC--CCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 35566666 66666655555 566666666666666666654 46666666666666666666665444566666677
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
++|++++|.+++ ..+|..++++++|++|++++|.+++..|..
T Consensus 131 ~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 131 KKLNVAHNFIHS--CKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CEEECCSSCCCC--CCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred CEEeCCCCcccc--eechHhHhhcCCCCEEEccCCcceecChhh
Confidence 777777776641 246777888888888888888887755543
No 30
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2.7e-15 Score=125.03 Aligned_cols=123 Identities=24% Similarity=0.226 Sum_probs=77.6
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCCCCCCCCCChhccCCCCCCE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTY 133 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 133 (200)
|.+..+.|... ...++.|+| ++|.+.+..+. .+. ++++|+.|+|++|.+++. .+..|..+++|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~L--s~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~ 92 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDL--SHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRY 92 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEEC--CSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEEC--CCCCCCccChh--hhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCE
Confidence 56766777532 234677777 77777755555 455 677777777777777664 4455667777777
Q ss_pred EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 134 LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 134 L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
|+|++|.+++..+..+..+++|++|+|++|+++ ...|..|..+++|+.|+|++|.|++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCccc---EECHHHhCCcccCCEEECCCCcCCe
Confidence 777777776544445666677777777777663 2224455566666666666666553
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=9e-15 Score=117.17 Aligned_cols=114 Identities=25% Similarity=0.225 Sum_probs=99.9
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 109 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 109 TNLKELVL--VENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEEEC--CCCcCCccCHH--HhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 67999999 99999976666 689999999999999999985 55667899999999999999997766778999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|++++|+++ +..+..+..+++|++|++++|++.+..|
T Consensus 184 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 184 KDLRLYQNQLK---SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcCC---ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 99999999995 3445568999999999999999988766
No 32
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=4.2e-15 Score=113.44 Aligned_cols=110 Identities=24% Similarity=0.240 Sum_probs=94.5
Q ss_pred EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCCh-hccCCCCCCEEeccCCcCCCCCcccccCCCCCCE
Q 037769 79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157 (200)
Q Consensus 79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~ 157 (200)
+.+++ +++.+. .+|. .+.. .|++|++++|.+++. .+. .+..+++|++|+|++|.+++..|..+.++++|++
T Consensus 11 ~~l~~--s~~~l~-~ip~--~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDC--TGRGLK-EIPR--DIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEEC--TTSCCS-SCCS--CCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEc--CCCCcC-cCcc--CCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 57899 999986 6776 5543 899999999999874 333 4889999999999999999888999999999999
Q ss_pred EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 158 L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
|+|++|+++ +..+..+..+++|++|+|++|+|++.+|..
T Consensus 83 L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 83 LQLGENKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp EECCSCCCC---EECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred EECCCCcCC---ccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence 999999995 334556899999999999999999987764
No 33
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=1e-14 Score=109.33 Aligned_cols=105 Identities=22% Similarity=0.165 Sum_probs=82.8
Q ss_pred EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEe
Q 037769 80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLD 159 (200)
Q Consensus 80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~ 159 (200)
.+++ ++|.+. .+|. .+ .+.|++|+|++|.+++. .|..+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 13 ~l~~--s~n~l~-~ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 13 TVDC--SGKSLA-SVPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp EEEC--TTSCCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEe--CCCCcC-ccCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 5667 777777 4665 44 37889999999999886 677788899999999999999865555678889999999
Q ss_pred ccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769 160 LSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 160 Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~ 195 (200)
|++|+++ ...+..+..+++|++|+|++|++...
T Consensus 85 L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 85 LNDNQLK---SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCSSCCC---CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCccC---EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999984 22334588889999999999988754
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=1e-14 Score=128.45 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=98.8
Q ss_pred CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
..++++|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..|..+++|++|++++|.+++..|..++++++
T Consensus 31 ~~~l~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDL--SFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEEC--CCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 357899999 99999877777 788999999999999999876 6778889999999999999999777888999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc-CCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL-IKPFS 199 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g-~iP~~ 199 (200)
|++|++++|.++ ...+..++++++|++|++++|.+.+ .+|..
T Consensus 106 L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~ 148 (606)
T 3vq2_A 106 LENLVAVETKLA---SLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148 (606)
T ss_dssp CCEEECTTSCCC---CSSSSCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CCEEEccCCccc---cccccccCCCCCCCEEeCCCCcccceechHh
Confidence 999999999984 2333568899999999999999875 56753
No 35
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.1e-14 Score=114.10 Aligned_cols=112 Identities=22% Similarity=0.158 Sum_probs=97.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|+| ++|.+....+. .+..+++|++|+|++|.+++. .+..+..+++|+.|+|++|.++ .+|..+..+++|
T Consensus 64 ~~L~~L~L--~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 137 (229)
T 3e6j_A 64 INLKELYL--GSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137 (229)
T ss_dssp TTCCEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred cCCcEEEC--CCCCCCCcChh--hcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence 58999999 99999754445 678999999999999999985 5566789999999999999999 889999999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
++|+|++|+++ ...+..+..+++|+.|++++|++.+..
T Consensus 138 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 138 THLALDQNQLK---SIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SEEECCSSCCC---CCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CEEECCCCcCC---ccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999995 223356889999999999999998654
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=5.4e-15 Score=129.96 Aligned_cols=116 Identities=24% Similarity=0.226 Sum_probs=102.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++++|+| ++|.|.+..+. .|.++++|++|+|++|.+++. .+..|.++++|++|++++|.+++..+..++++++|
T Consensus 76 ~~L~~L~L--s~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 76 PELQVLDL--SRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred CCCCEEEC--CCCcCCCcChh--HhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 57999999 99999976666 799999999999999999974 44568999999999999999997666679999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
++|+|++|.+++ ..+|..++.+++|++|++++|++++..|.
T Consensus 151 ~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 151 KELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CeeccccCcccc--CCCchhhccchhhhhhcccCccccccccc
Confidence 999999999962 35688899999999999999999876554
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=1.6e-14 Score=116.14 Aligned_cols=111 Identities=23% Similarity=0.160 Sum_probs=78.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC-CCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN-FLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|. +... .|..+..+++|++|++++|.+++..|..+..+++
T Consensus 56 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 56 RNLTILWL--HSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEC--CCCccceeCHh--hcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 46777777 77777665565 67777777777777776 5553 4666777777777777777777666666777777
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
|++|++++|+++ ...+..++.+++|++|++++|.+++
T Consensus 131 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 131 LQYLYLQDNALQ---ALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCEEECCCCccc---ccCHhHhccCCCccEEECCCCcccc
Confidence 777777777773 2223446777788888888887775
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=1.2e-14 Score=116.43 Aligned_cols=115 Identities=24% Similarity=0.234 Sum_probs=83.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+.++++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 52 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 52 PELQVLDL--SRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTCSEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred cCCcEEEC--CCCcCCccCHH--HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 46777777 77777755555 577777777777777777765 45667777778888887777776555567778888
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|++++|.+++ ..+|..+..+++|++|++++|++++..|
T Consensus 127 ~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 127 KELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CEEECcCCccce--ecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 888888888742 2367778888888888888888876433
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=124.80 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=80.3
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.|+| ++|.+.+..+. .|.++++|++|+|++|.+++. .|..+..+++|++|+|++|.++...+..+.++++|
T Consensus 32 ~~l~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDL--GKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEEC--CSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEEC--CCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 46777888 88888766666 677788888888888877765 57777777888888888887774444456777777
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|+|++|+++ ...|..+..+++|++|++++|.+.+..|
T Consensus 107 ~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 107 TKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp CEEECTTSCCC---EECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred CEEECCCCccc---cCChhHccccccCCEEECCCCccceeCh
Confidence 77777777773 3344556666666666666666665444
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=9.7e-15 Score=124.31 Aligned_cols=115 Identities=23% Similarity=0.212 Sum_probs=89.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 299 ~~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 299 TDLEQLTL--AQNEINKIDDN--AFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCEEEC--CCCcccccChh--HhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 46788888 88888877676 677888888888888888765 56777888888888888888887777788888888
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
++|+|++|+++ ...+..+..+++|++|++++|++++.+|.
T Consensus 374 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 374 KELALDTNQLK---SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cEEECCCCccc---cCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 88888888884 22233567888888888888888887773
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=9.1e-15 Score=118.60 Aligned_cols=117 Identities=25% Similarity=0.264 Sum_probs=81.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+.+..+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 126 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 126 RNLIYLDI--SHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTCCEEEC--TTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCEEEC--CCCcCCccchh--hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 35666666 66666665555 566777777777777777651156667777777777777777776666677777778
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
++|++++|++++ ..+..+..+++|++|++++|++.+.+|..
T Consensus 202 ~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 202 QVLNMSHNNFFS---LDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CEEECTTSCCSB---CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred CEEECCCCccCc---cChhhccCcccCCEeECCCCCCcccCHHH
Confidence 888888877742 22335677788888888888887766643
No 42
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=2.4e-15 Score=136.10 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=99.9
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.|+| ++|.+. .++. .+..+++|++|+|++|.++ . +|..+..+++|++|+|++|.|+ .+|..++.+++|
T Consensus 224 ~~L~~L~L--s~n~l~-~l~~--~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 224 QLWHALDL--SNLQIF-NISA--NIFKYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp CCCCEEEC--TTSCCS-CCCG--GGGGCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred CCCcEEEC--CCCCCC-CCCh--hhcCCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 46788999 999988 7777 6889999999999999998 4 8999999999999999999999 789999999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
++|+|++|.+ ..+|..|+.+++|++|+|++|.|+|.+|.
T Consensus 296 ~~L~L~~N~l----~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 296 KYFYFFDNMV----TTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SEEECCSSCC----CCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CEEECCCCCC----CccChhhhcCCCccEEeCCCCccCCCChH
Confidence 9999999999 36788899999999999999999987764
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=4.8e-14 Score=114.23 Aligned_cols=113 Identities=24% Similarity=0.230 Sum_probs=89.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+. .+|. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 77 ~~L~~L~L--s~N~l~-~l~~--~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDL--SHNQLQ-SLPL--LGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp TTCCEEEC--CSSCCS-SCCC--CTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CcCCEEEC--CCCcCC-cCch--hhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 57888888 888877 6666 678888888999999888875 55678888889999999998886555567788889
Q ss_pred CEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCcCCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
+.|+|++|+++ .+|. .+..+++|++|+|++|+++ .||..
T Consensus 151 ~~L~L~~N~l~----~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~ 190 (290)
T 1p9a_G 151 EKLSLANNNLT----ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190 (290)
T ss_dssp CEEECTTSCCS----CCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CEEECCCCcCC----ccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence 99999998884 3443 4678888999999999888 57764
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=1.8e-15 Score=134.90 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=105.3
Q ss_pred CcEEEEEcccCCCCCeec-----------------cCCCcccc--CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769 76 GNVIGLDLYSSCSWLVGT-----------------IDDNSTLF--HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL 136 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~-----------------~p~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L 136 (200)
.++++|+| ++|.+.+. +|. .+. ++++|++|++++|.+.+. +|..+..+++|++|++
T Consensus 206 ~~L~~L~L--s~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 206 TKLRQFYM--GNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINV 280 (636)
T ss_dssp TTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEEC
T ss_pred cCCCEEEC--cCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEEC
Confidence 68999999 99999985 888 888 999999999999999998 9999999999999999
Q ss_pred cCCc-CCC-CCcccccCC------CCCCEEeccCCcCCCCCCchhh--hhcCCCCCCEEecccccCCcCCC
Q 037769 137 SASN-FGG-LVPYEMSHS------SKLTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 137 s~n~-l~~-~~P~~l~~l------~~L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|. ++| .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|++++|.++|.||
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC----ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 9998 998 899988876 99999999999993 6888 89999999999999999999998
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=1.3e-14 Score=116.21 Aligned_cols=111 Identities=23% Similarity=0.196 Sum_probs=71.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC-CCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG-LVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+..+. .+.++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ .+|..+..+++
T Consensus 76 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 76 SHLSTLIL--TGNPIQSLALG--AFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred cCCCEEEC--CCCccCccChh--hhcCCccccEEECCCCCcccc-CchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 46677777 77777665555 567777777777777777664 34456677777777777777764 25666777777
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCC----EEecccccCCc
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLS----LLYLGATNMSL 194 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~----~L~Ls~N~l~g 194 (200)
|++|++++|++++ ..+..+..+++|+ .|++++|.+++
T Consensus 151 L~~L~Ls~N~l~~---~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 151 LEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp CCEEECCSSCCCE---ECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred CCEEECCCCCCCc---CCHHHhhhhhhccccceeeecCCCcccc
Confidence 7777777777742 2223343333333 67777777765
No 46
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=2.8e-14 Score=107.36 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=87.9
Q ss_pred EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769 79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHL 158 (200)
Q Consensus 79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L 158 (200)
+.+++ ++|.+. .+|. .+. +.|++|+|++|.+++. .|..+..+++|++|+|++|++++..+..+..+++|++|
T Consensus 15 ~~l~~--~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNC--QNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEEC--CSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEe--CCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 47888 888886 6776 553 8899999999999986 68889999999999999999996544557899999999
Q ss_pred eccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCc
Q 037769 159 DLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 159 ~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g 194 (200)
+|++|+++ .+|. .+..+++|++|+|++|++..
T Consensus 87 ~L~~N~l~----~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 87 DLNDNHLK----SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ECCSSCCC----CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ECCCCccc----eeCHHHhccccCCCEEEeCCCCccc
Confidence 99999994 3444 48899999999999999874
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=4.4e-14 Score=113.55 Aligned_cols=115 Identities=23% Similarity=0.217 Sum_probs=95.9
Q ss_pred CcEEEEEcccCCCC-CeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSW-LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~-l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|. +....+. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+++
T Consensus 80 ~~L~~L~l--~~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 80 ALLEQLDL--SDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTCCEEEC--CSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEeC--CCCCCccccCHH--HhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 57899999 9997 6655566 788899999999999999886 6777888999999999999998665566888999
Q ss_pred CCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCcCCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
|++|++++|+++ .+|. .+..+++|++|++++|.+++.+|..
T Consensus 155 L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 155 LTHLFLHGNRIS----SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp CCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccEEECCCCccc----ccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 999999999984 3443 5888999999999999998876754
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=5.8e-14 Score=112.22 Aligned_cols=111 Identities=23% Similarity=0.177 Sum_probs=68.3
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 85 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 85 KNLETLWV--TDNKLQALPIG--VFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TTCCEEEC--CSSCCCCCCTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEC--CCCcCCcCCHh--HcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 45666666 66666644444 456666666666666666654 44455666667777777776664433446666677
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
+.|+|++|+++ ...+..+..+++|++|++++|++++
T Consensus 160 ~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 160 KELRLYNNQLK---RVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ceeEecCCcCc---EeChhHhccCCCcCEEECCCCcCCc
Confidence 77777777663 2223346666777777777777664
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.54 E-value=3e-14 Score=125.50 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=94.6
Q ss_pred CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
+..++.|++ ++|.+++..+. .+.++++|++|++++|.+.+. .|..|..+++|++|++++|.+.+..|..++++++
T Consensus 32 ~~~l~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 32 PNSTECLEF--SFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CTTCCEEEC--TTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCcCcEEEc--cCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 357899999 99999877777 789999999999999999876 7888899999999999999998777888889999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
|++|++++|.++ ..-|..++++++|++|++++|.+.+
T Consensus 107 L~~L~L~~n~i~---~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 107 LKHLFFIQTGIS---SIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp CCEEECTTSCCS---CGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred ccEeeccccCcc---cCCcchhccCCcccEEECCCCcccc
Confidence 999999999884 2235567888888888888888876
No 50
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.8e-14 Score=107.11 Aligned_cols=112 Identities=22% Similarity=0.159 Sum_probs=98.6
Q ss_pred CcEEEEEcccCCCCCe-eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLV-GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~-~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+. +.+|. .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+|..+..+++
T Consensus 24 ~~L~~L~l--~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVL--DNCKSNDGKIEG--LTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEEC--CSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEEC--CCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 67999999 999998 78888 78999999999999999986 5 67899999999999999999878888888999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
|++|++++|++++. ..+..+..+++|++|++++|++++..
T Consensus 97 L~~L~Ls~N~l~~~--~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 97 LTHLNLSGNKLKDI--STLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp CCEEECBSSSCCSS--GGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred CCEEeccCCccCcc--hhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 99999999999521 12267899999999999999998643
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.54 E-value=3.1e-14 Score=127.08 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=56.9
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++++|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..++++++|
T Consensus 25 ~~l~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNL--THNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEEC--CSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEC--CCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 34555555 55555544433 455555555555555555554 44455555555555555555553222235555555
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|++++|+++ ...|..++++++|++|++++|.+++..|
T Consensus 100 ~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 100 TELHLMSNSIQ---KIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp SEEECCSSCCC---CCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred CEEECCCCccC---ccChhHccccCCCCEEECCCCcccccCc
Confidence 55555555552 1222344455555555555555544333
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=1.6e-14 Score=127.67 Aligned_cols=110 Identities=21% Similarity=0.127 Sum_probs=63.2
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.|+| ++|.+.+..+. .+..+++|++|+|++|.+++. .|..++.+++|++|+|++|.+++..+..++.+++|+
T Consensus 76 ~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 76 QVELLNL--NDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCSEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcEEEC--CCCCCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 3455555 55655555554 556666666666666666654 444456666666666666666633333345666666
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
+|+|++|.++ +..|..++.+++|++|++++|.+++
T Consensus 151 ~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 151 TLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EEECCSSCCC---BCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEEeeCCcCC---CCChhhhhcCCcCcEEECcCCCCCC
Confidence 6666666663 2334456666666666666666654
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=2.8e-14 Score=125.86 Aligned_cols=108 Identities=21% Similarity=0.199 Sum_probs=97.6
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
.++.|++ ++|.+++ +|. +..+++|+.|+|++|.++ . +|..++.+++|+.|+|++|.+++ +| .++.+++|+
T Consensus 442 ~L~~L~L--s~n~l~~-lp~---~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHL--AHKDLTV-LCH---LEQLLLVTHLDLSHNRLR-A-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEEC--TTSCCSS-CCC---GGGGTTCCEEECCSSCCC-C-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred CceEEEe--cCCCCCC-CcC---ccccccCcEeecCccccc-c-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 5788999 9999985 664 899999999999999999 4 89999999999999999999996 77 899999999
Q ss_pred EEeccCCcCCCCCCch-hhhhcCCCCCCEEecccccCCcCCC
Q 037769 157 HLDLSFCVLTIEHRTF-DLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~l-p~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
.|+|++|+++ +.. |..++.+++|+.|+|++|++++.+|
T Consensus 512 ~L~Ls~N~l~---~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 512 ELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EEECCSSCCC---SSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred EEECCCCCCC---CCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999995 333 8899999999999999999998655
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.54 E-value=1e-14 Score=118.29 Aligned_cols=126 Identities=20% Similarity=0.184 Sum_probs=79.7
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCC-CChhccCCCCCCE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTY 133 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~ 133 (200)
|.|.++.|... ..++++|++ ++|.+....+. .+.++++|++|++++|.++... .+..+..+++|++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L--~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLEL--ESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEEC--CCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 78999999652 247899999 99998843333 5788899999999988886320 2455556667777
Q ss_pred EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 134 LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 134 L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
|++++|.+. .+|..+..+++|++|++++|++++. .....+..+++|++|++++|.+.+.+
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESS--TTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCccccc--ccchhhhhccCCCEEECCCCcCCccc
Confidence 777777666 4555566666666666666666321 00123445555555555555554433
No 55
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=9.4e-14 Score=106.12 Aligned_cols=107 Identities=23% Similarity=0.226 Sum_probs=92.8
Q ss_pred EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769 79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHL 158 (200)
Q Consensus 79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L 158 (200)
+.+++ +++.+. .+|. .+ .+.|++|++++|.++. +|..+..+++|+.|+|++|.+++..+..|.++++|++|
T Consensus 13 ~~l~~--~~~~l~-~ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRC--SNKGLK-VLPK--GI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEEC--TTSCCS-SCCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEc--CCCCCC-cCCC--CC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 46889 999988 6776 44 3689999999999985 78999999999999999999997777789999999999
Q ss_pred eccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 159 DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 159 ~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
+|++|+++ ...|..|..+++|++|+|++|.|++ +|.
T Consensus 84 ~Ls~N~l~---~i~~~~f~~l~~L~~L~L~~N~l~~-~~~ 119 (193)
T 2wfh_A 84 ILSYNRLR---CIPPRTFDGLKSLRLLSLHGNDISV-VPE 119 (193)
T ss_dssp ECCSSCCC---BCCTTTTTTCTTCCEEECCSSCCCB-CCT
T ss_pred ECCCCccC---EeCHHHhCCCCCCCEEECCCCCCCe-eCh
Confidence 99999995 3345679999999999999999995 554
No 56
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=3.7e-14 Score=118.08 Aligned_cols=112 Identities=22% Similarity=0.212 Sum_probs=97.4
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|+| ++|.+.+..+. .|.++++|++|+|++|.++.. .+..+..+++|+.|+|++|.+.+..|..+..+++|
T Consensus 64 ~~L~~L~L--~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 64 TNLHSLLL--SHNHLNFISSE--AFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cccCEEEC--CCCcCCccChh--hccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 68999999 99999977777 799999999999999999875 55678999999999999999997778899999999
Q ss_pred CEEeccCCcCCCCCCchhhhh----cCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLA----SNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l----~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+.|+|++|+++ .+|..+ ..+++|+.|+|++|+|++ +|
T Consensus 139 ~~L~L~~N~l~----~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~ 179 (361)
T 2xot_A 139 QKLYLSQNQIS----RFPVELIKDGNKLPKLMLLDLSSNKLKK-LP 179 (361)
T ss_dssp CEEECCSSCCC----SCCGGGTC----CTTCCEEECCSSCCCC-CC
T ss_pred CEEECCCCcCC----eeCHHHhcCcccCCcCCEEECCCCCCCc-cC
Confidence 99999999995 355543 679999999999999985 55
No 57
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=6.4e-15 Score=133.34 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCC-CCCCccccceEecCCCCcEEEEEccc------------
Q 037769 19 SCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTE-GTDCCSWDGVTCDNVTGNVIGLDLYS------------ 85 (200)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~c~w~gv~c~~~~~~l~~L~L~~------------ 85 (200)
+....++.++++++....+. .. .....|.. ......|.++.+.. ++++.|+|..
T Consensus 128 s~~~~~~~~l~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~ 194 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDS-KT----------AKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQ 194 (727)
T ss_dssp ----CCCHHHHHHHHHHHHH-HT----------TC---------------------------------------------
T ss_pred hccccchhhhhhhhhhcccc-cC----------cccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhh
Confidence 34456678899998877544 21 12334633 34456777766543 2333333300
Q ss_pred ----CCCCCee---------ccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCC
Q 037769 86 ----SCSWLVG---------TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152 (200)
Q Consensus 86 ----~~n~l~~---------~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l 152 (200)
+.+.+.+ ..+. .+..++.|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..++.+
T Consensus 195 ~l~Ls~~~i~~~~~~~n~~~~~~~--~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 195 HKKLSQYSIDEDDDIENRMVMPKD--SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred cCccCcccccCccccccceecChh--hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 3443332 2244 67889999999999999984 8888889999999999999999 899999999
Q ss_pred CCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769 153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200 (200)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 200 (200)
++|++|+|++|.|+ .+|..+++|++|++|+|++|.|+ .||.+|
T Consensus 270 ~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT----SLPAELGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp TTCCEEECTTSCCS----SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred CCCCEEeCcCCcCC----ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence 99999999999994 67999999999999999999997 788754
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=131.16 Aligned_cols=96 Identities=21% Similarity=0.175 Sum_probs=50.1
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccc--ccCCCCCCEEeccCCcCCCCCCchhhhh
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE--MSHSSKLTHLDLSFCVLTIEHRTFDLLA 176 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~--l~~l~~L~~L~Ls~N~l~~~~~~lp~~l 176 (200)
.+.++++|++|+|++|.+.+. .|..+..+++|++|+|++|.+++.+|.. +..+++|++|+|++|.+++ ...+..+
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~ 144 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSF 144 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGG
T ss_pred HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--cccchhH
Confidence 345555555555555555543 4555555555555555555555444433 5555555555555555531 1122345
Q ss_pred cCCCCCCEEecccccCCcCCC
Q 037769 177 SNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 177 ~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+++++|++|+|++|.+++..|
T Consensus 145 ~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 145 GKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp GTCSSCCEEEEESSCCCCCCS
T ss_pred hhCCCCCEEECCCCcCCeeCH
Confidence 666666666666666655444
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.52 E-value=2.8e-14 Score=119.49 Aligned_cols=109 Identities=21% Similarity=0.158 Sum_probs=56.7
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccc-ccCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE-MSHSSKL 155 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~-l~~l~~L 155 (200)
++++|++ ++|.+.+..+. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.++ .+|.. +..+++|
T Consensus 70 ~L~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 143 (390)
T 3o6n_A 70 QVELLNL--NDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143 (390)
T ss_dssp CCSEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cCcEEEC--CCCcccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCC
Confidence 3444555 55555544443 455555555555555555554 3444555555555555555555 23332 3555555
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++|++++|.++ ...|..+..+++|++|++++|.+++
T Consensus 144 ~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 144 TTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CEEECCSSCCC---BCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred cEEECCCCccC---ccChhhccCCCCCCEEECCCCcCCc
Confidence 55555555552 2223345555566666666655553
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=1e-13 Score=113.73 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=99.4
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|+.+.|... ..+++.|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..+..+++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDL--QNNDISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEEC--CCCcCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEE
Confidence 78999998642 247899999 99999977777 799999999999999999986 68889999999999
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++++|.+. .+|..+. ++|++|++++|+++ ...+..+.++++|++|++++|.+.
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIR---KVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCC---CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccC---ccCHhHhCCCccCCEEECCCCccc
Confidence 99999998 6776654 78999999999884 223345788888888888888885
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=3.4e-14 Score=108.57 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=50.5
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCc-CCCCCcccccCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN-FGGLVPYEMSHSSKL 155 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~P~~l~~l~~L 155 (200)
+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .|..+..+++|+.|++++|. +. .+| .+..+++|
T Consensus 89 ~L~~L~l--~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L 161 (197)
T 4ezg_A 89 NLERLRI--MGKDVTSDKIP--NLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL 161 (197)
T ss_dssp TCCEEEE--ECTTCBGGGSC--CCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred CCCEEEe--ECCccCcccCh--hhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence 4455555 55555444444 455555555555555555543 44445555555555555554 33 333 34455555
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++|++++|.++ .++ .+..+++|++|++++|++.
T Consensus 162 ~~L~l~~n~i~----~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 162 KSLNIQFDGVH----DYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECTTBCCC----CCT-TGGGCSSCCEEEECBC---
T ss_pred CEEECCCCCCc----ChH-HhccCCCCCEEEeeCcccC
Confidence 55555555552 122 3445555555555555544
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=7.5e-14 Score=119.32 Aligned_cols=96 Identities=24% Similarity=0.193 Sum_probs=81.7
Q ss_pred ccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769 66 WDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL 136 (200)
Q Consensus 66 w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L 136 (200)
|..|.|.+. ..+++.|+| ++|.+.+..+. .|.++++|++|+|++|.+++. .|..+..+++|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNL--MENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEEC--cCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEEC
Confidence 567777542 357899999 99999987777 899999999999999999886 6678899999999999
Q ss_pred cCCcCCCCCcccccCCCCCCEEeccCCcCC
Q 037769 137 SASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166 (200)
Q Consensus 137 s~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~ 166 (200)
++|.+++..+..+..+++|++|+|++|+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 999999655566888999999999999884
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=3.7e-14 Score=123.40 Aligned_cols=117 Identities=24% Similarity=0.259 Sum_probs=103.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC-CCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG-LVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~ 154 (200)
.++++|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..++.+++|++|++++|.+++ .+|..++++++
T Consensus 50 ~~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 50 ANLQVLIL--KSSRINTIEGD--AFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred CcccEEEC--CCCCcCccChh--hccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 68999999 99999988777 899999999999999999986 55669999999999999999986 46778999999
Q ss_pred CCEEeccCCcCCCCCCchh-hhhcCCCCCCEEecccccCCcCCCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGATNMSLIKPFSL 200 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 200 (200)
|++|++++|.+ .+.+| ..+.++++|++|++++|.+++.+|..+
T Consensus 125 L~~L~L~~n~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 125 LQTLRIGNVET---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CCEEEEEESSS---CCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ccEEECCCCcc---ccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 99999999985 24565 578999999999999999998887653
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=1.8e-13 Score=112.17 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=84.6
Q ss_pred CccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCE
Q 037769 63 CCSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTY 133 (200)
Q Consensus 63 ~c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 133 (200)
.|.|+.+.|... ...++.|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..+..+++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 104 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDL--QNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLER 104 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEEC--CSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCE
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEEC--CCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCE
Confidence 378998988642 357899999 99999977776 789999999999999999986 6888999999999
Q ss_pred EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccC
Q 037769 134 LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNM 192 (200)
Q Consensus 134 L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l 192 (200)
|++++|.++ .+|..+. ++|++|++++|.++ ...+..+.++++|++|++++|.+
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEIT---KVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCC---BBCHHHHTTCTTCCEEECCSSCC
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCccc---ccCHhHhcCCccccEEECCCCcC
Confidence 999999887 5665433 45666666665553 12222344444444444444443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=7.3e-14 Score=120.90 Aligned_cols=123 Identities=18% Similarity=0.059 Sum_probs=90.6
Q ss_pred ccccceEecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhcc-CCCCCCEEeccCCcCC
Q 037769 64 CSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFG-RLKELTYLNLSASNFG 142 (200)
Q Consensus 64 c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~ 142 (200)
|.+.++.+... .+++.|++ ++|.+.+..+. .+..+++|+.|++++|.+++. .|..+. .+++|+.|+|++|.++
T Consensus 109 N~l~~~~~~~l-~~L~~L~L--~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 109 NNISRVSCSRG-QGKKNIYL--ANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SCCCCEEECCC-SSCEEEEC--CSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCCCCcccc-CCCCEEEC--CCCCCCCCCch--hhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccc
Confidence 44555656543 57888888 88888877777 788888888888888888876 666665 6788888888888887
Q ss_pred CCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 143 GLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 143 ~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
+. |. ...+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ ||..
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~----~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred cc-cc-cccCCCCCEEECCCCCCC----CCCHhHcCCCCccEEEecCCcCcc-cchh
Confidence 54 33 345778888888888884 355557777888888888888875 5543
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=121.83 Aligned_cols=115 Identities=27% Similarity=0.315 Sum_probs=81.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCC-CCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFL-GSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+. +. +|..+..+++|+.|++++|.+++..|..+..+++
T Consensus 421 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 421 RNLIYLDI--SHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTCCEEEC--TTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCEEeC--cCCcccccchh--hhhcCCcCcEEECcCCcCcccc-chhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 35666666 66666665665 5667777777777777776 33 6667777777777777777777666777777778
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
|++|++++|+++ +..|..+..+++|+.|++++|++++.+|.
T Consensus 496 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLK---SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCC---CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 888888887774 33345577778888888888888777664
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=9.5e-14 Score=121.11 Aligned_cols=115 Identities=24% Similarity=0.234 Sum_probs=82.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++++|++ ++|.+.+..+. .+.++++|++|++++|.++.. .|..+..+++|++|++++|.+++..+..++.+++|
T Consensus 52 ~~L~~L~L--s~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 52 PELQVLDL--SRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp SSCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCceEEEC--CCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccc
Confidence 46777777 77777765555 677777788888877777764 45667777788888888777775433457777888
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|++++|.+++ ..+|..++++++|++|++++|.+++..|
T Consensus 127 ~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 127 KELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CEEECCSSCCCC--CCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cEEecCCCccce--ecChhhhcccCCCCEEeCcCCccceecH
Confidence 888888887741 2467778888888888888887775443
No 68
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=6.9e-13 Score=99.40 Aligned_cols=109 Identities=22% Similarity=0.170 Sum_probs=89.9
Q ss_pred EEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCE
Q 037769 78 VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157 (200)
Q Consensus 78 l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~ 157 (200)
.+.+++ +++.+. .+|. .+ .++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 9 ~~~l~~--~~~~l~-~~p~--~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRC--NSKGLT-SVPT--GI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEEC--CSSCCS-SCCT--TC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEe--cCCCCc-cCCC--CC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 357888 888887 4555 33 47999999999999975 5556789999999999999999665666899999999
Q ss_pred EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769 158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 158 L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
|++++|+++ ...+..+..+++|++|++++|.+++ +|.
T Consensus 81 L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~-~~~ 117 (177)
T 2o6r_A 81 LYLHENKLQ---SLPNGVFDKLTQLKELALDTNQLKS-VPD 117 (177)
T ss_dssp EECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred EECCCCCcc---ccCHHHhhCCcccCEEECcCCcceE-eCH
Confidence 999999995 3334457899999999999999985 554
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.7e-13 Score=104.58 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=91.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+. . .+ .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 66 ~~L~~L~l--~~n~~~-~-~~--~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 66 HNIKDLTI--NNIHAT-N-YN--PISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp TTCSEEEE--ESCCCS-C-CG--GGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred CCCCEEEc--cCCCCC-c-ch--hhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 57889999 888664 2 23 588899999999999999876 67788999999999999999997788889999999
Q ss_pred CEEeccCCc-CCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCV-LTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~-l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++|++++|. + ..+| .+..+++|++|++++|++++
T Consensus 139 ~~L~L~~n~~i----~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 139 NSIDLSYNGAI----TDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CEEECCSCTBC----CCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CEEEccCCCCc----cccH-hhcCCCCCCEEECCCCCCcC
Confidence 999999998 5 4555 58889999999999999886
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=116.04 Aligned_cols=96 Identities=22% Similarity=0.175 Sum_probs=77.1
Q ss_pred ccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769 66 WDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL 136 (200)
Q Consensus 66 w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L 136 (200)
|..|.|... ...++.|+| ++|.+.+..+. .|.++++|++|+|++|.++.. .+..+..+++|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNL--HENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEEC--CSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEc--cCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEEC
Confidence 567777542 356788999 99999877777 788899999999999998875 5677888899999999
Q ss_pred cCCcCCCCCcccccCCCCCCEEeccCCcCC
Q 037769 137 SASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166 (200)
Q Consensus 137 s~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~ 166 (200)
++|.++...+..+..+++|++|+|++|+++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 999888555556888888888888888874
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=3.8e-14 Score=115.64 Aligned_cols=115 Identities=19% Similarity=0.090 Sum_probs=64.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCC-----CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC--Cccc
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHL-----SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL--VPYE 148 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~P~~ 148 (200)
.+++.|++ ++|.+.+. |. .+..+ ++|++|++++|.+.+. .|..+..+++|++|++++|.+.+. +|..
T Consensus 121 ~~L~~L~L--s~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 121 PDLNILNL--RNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp CCCSEEEE--ESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred CCccEEEc--cCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 45666666 66666644 44 45544 6666666666666654 445666666666666666666543 2333
Q ss_pred c--cCCCCCCEEeccCCcCCCCCCchh-hhhcCCCCCCEEecccccCCcCCC
Q 037769 149 M--SHSSKLTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 149 l--~~l~~L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+ ..+++|++|++++|++++. +.++ ..+..+++|++|++++|.+++.+|
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETP-SGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCH-HHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcch-HHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 3 5566666666666666311 1222 223455666666666666665443
No 72
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.9e-13 Score=102.58 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=59.6
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh-ccCCCCCCEEeccCCcCCCCCcc--cccCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPY--EMSHSS 153 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l~ 153 (200)
+++.|++ ++|.+.+. + .+..+++|++|++++|.+++ +|+. +..+++|++|++++|.+. .+|. .+..++
T Consensus 43 ~L~~L~L--s~N~l~~~--~--~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~ 113 (176)
T 1a9n_A 43 QFDAIDF--SDNEIRKL--D--GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK 113 (176)
T ss_dssp CCSEEEC--CSSCCCEE--C--CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT
T ss_pred CCCEEEC--CCCCCCcc--c--ccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCC
Confidence 5666666 66666543 3 45666666666666666654 3322 355666666666666664 4444 555666
Q ss_pred CCCEEeccCCcCCCCCCchhh----hhcCCCCCCEEecccccC
Q 037769 154 KLTHLDLSFCVLTIEHRTFDL----LASNLTKLSLLYLGATNM 192 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~----~l~~l~~L~~L~Ls~N~l 192 (200)
+|+.|++++|.++ .+|. .+..+++|++|+++.|.+
T Consensus 114 ~L~~L~l~~N~i~----~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 114 SLTYLCILRNPVT----NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSSGGG----GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEEecCCCCC----CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666666666663 2333 255666666666666543
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=3.5e-13 Score=109.12 Aligned_cols=109 Identities=20% Similarity=0.072 Sum_probs=96.3
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+++..+. .+..+++|++|++++|.+++. .+..+..+++|+.|+|++|+++...+..+..+++|
T Consensus 100 ~~L~~L~l--~~N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 100 PALTVLDV--SFNRLTSLPLG--ALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp TTCCEEEC--CSSCCCCCCSS--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred CCCCEEEC--CCCcCcccCHH--HHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 57999999 99999976666 799999999999999999985 55667899999999999999995444567889999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++|+|++|+++ .+|..+..+.+|+.|+|++|++.
T Consensus 175 ~~L~L~~N~l~----~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 DTLLLQENSLY----TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECCSSCCC----CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCC----ccChhhcccccCCeEEeCCCCcc
Confidence 99999999994 67888888899999999999876
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=7.1e-14 Score=109.63 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=73.3
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC-CCCCCCChhccCCCCCCEEeccC-CcCCCCCcccccCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN-FLGSQLSPEFGRLKELTYLNLSA-SNFGGLVPYEMSHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~P~~l~~l~ 153 (200)
..++.|++ ++|.+++..+. .+.++++|++|++++|. ++.. .+..+..+++|++|++++ |.+++..+..+.+++
T Consensus 31 ~~l~~L~l--~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKL--IETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEE--ESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CcccEEEE--eCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 46788888 88888766555 67778888888888886 6653 334677778888888887 777754445677777
Q ss_pred CCCEEeccCCcCCCCCCchhhhhcCCCCCC---EEecccc-cCC
Q 037769 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLS---LLYLGAT-NMS 193 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~---~L~Ls~N-~l~ 193 (200)
+|++|++++|++++ +|. +..+++|+ +|++++| .+.
T Consensus 106 ~L~~L~l~~n~l~~----lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM----FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp TCCEEEEEEECCCS----CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred CCCEEeCCCCCCcc----ccc-cccccccccccEEECCCCcchh
Confidence 77777777777742 343 45555555 5555555 454
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=2.6e-13 Score=119.94 Aligned_cols=138 Identities=18% Similarity=0.104 Sum_probs=108.1
Q ss_pred CCCCCCCCCCCcc----ccceEecC------C----------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEcc
Q 037769 53 KTNSWTEGTDCCS----WDGVTCDN------V----------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLA 112 (200)
Q Consensus 53 ~~~~W~~~~~~c~----w~gv~c~~------~----------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~ 112 (200)
.+.+|..+.+||. |.++.|+. . ..+++.+++ +++.+....+. .+..+++|++|+++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l--~~~~l~~lp~~--~~~~l~~L~~L~L~ 83 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF--KNSTMRKLPAA--LLDSFRQVELLNLN 83 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEE--SSCEESEECTH--HHHHCCCCSEEECT
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEe--eCCCCCCcCHH--HHccCCCCcEEECC
Confidence 3567876666663 66555431 0 145788889 88888754444 57889999999999
Q ss_pred CCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhh-hcCCCCCCEEeccccc
Q 037769 113 YSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLL-ASNLTKLSLLYLGATN 191 (200)
Q Consensus 113 ~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~-l~~l~~L~~L~Ls~N~ 191 (200)
+|.+++. .|..+..+++|++|+|++|.+++..|..++++++|++|+|++|.++ .+|.. |+++++|++|+|++|.
T Consensus 84 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 84 DLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----SLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp TSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC----CCCHHHhccCCCCCEEEeeCCc
Confidence 9999986 6668999999999999999999877778899999999999999994 45544 6899999999999999
Q ss_pred CCcCCCCC
Q 037769 192 MSLIKPFS 199 (200)
Q Consensus 192 l~g~iP~~ 199 (200)
+++..|..
T Consensus 159 l~~~~~~~ 166 (597)
T 3oja_B 159 LERIEDDT 166 (597)
T ss_dssp CCBCCTTT
T ss_pred CCCCChhh
Confidence 99876653
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.46 E-value=7.1e-14 Score=121.03 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=54.3
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
++++|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..+..+++|++|++++|.++ .+|.. .+++|+
T Consensus 22 ~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~ 93 (520)
T 2z7x_B 22 KTTILNI--SQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLK 93 (520)
T ss_dssp TCSEEEC--CSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCS
T ss_pred cccEEEC--CCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCcc
Confidence 4555555 55555544434 455555555555555555543 3445555555555555555555 34443 455555
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
+|+|++|++++ ..+|..++++++|++|++++|.+.
T Consensus 94 ~L~L~~N~l~~--~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 94 HLDLSFNAFDA--LPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp EEECCSSCCSS--CCCCGGGGGCTTCCEEEEEESSCC
T ss_pred EEeccCCcccc--ccchhhhccCCcceEEEecCcccc
Confidence 55555555531 123444555555555555555443
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=6.3e-14 Score=114.34 Aligned_cols=112 Identities=21% Similarity=0.123 Sum_probs=95.2
Q ss_pred CcEEEEEcccCCCCCeeccCCCccc--cCCCCCcEEEccCCCCCCCCCChhccCC-----CCCCEEeccCCcCCCCCccc
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTL--FHLSHLQSLNLAYSNFLGSQLSPEFGRL-----KELTYLNLSASNFGGLVPYE 148 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l--~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~P~~ 148 (200)
.++++|++ ++|.+.+.+|. .+ ..+++|++|++++|.+++ +|..+..+ ++|++|++++|.+.+..|..
T Consensus 95 ~~L~~L~L--~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 95 SGLQELTL--ENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp SCCCEEEE--EEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CCccEEEc--cCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 57899999 99999988888 65 889999999999999987 57777766 89999999999999877789
Q ss_pred ccCCCCCCEEeccCCcCCCCCCchhhhh--cCCCCCCEEecccccCCc
Q 037769 149 MSHSSKLTHLDLSFCVLTIEHRTFDLLA--SNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~~lp~~l--~~l~~L~~L~Ls~N~l~g 194 (200)
++.+++|++|++++|++++. ..+|..+ +.+++|++|++++|.+++
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGE-RGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHH-HHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred hccCCCCCEEECCCCCcCcc-hHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 99999999999999998421 1145555 889999999999999983
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=126.56 Aligned_cols=124 Identities=24% Similarity=0.236 Sum_probs=83.7
Q ss_pred ccccceEecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCC-ChhccCCCCCCEEeccCCcCC
Q 037769 64 CSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL-SPEFGRLKELTYLNLSASNFG 142 (200)
Q Consensus 64 c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~ 142 (200)
|.|..|.+ ...++++|+| ++|.+.+..+. .+.++++|++|++++|.+.+. + |..+..+++|++|+|++|.+.
T Consensus 14 ~~L~~vP~--lp~~l~~LdL--s~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLL--SFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEE--ESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCCCCC--CCCCcCEEEC--CCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCc
Confidence 34555554 2356777777 77777766666 677777777777777755444 4 566777777777777777777
Q ss_pred CCCcccccCCCCCCEEeccCCcCCCCCCchhhh--hcCCCCCCEEecccccCCcCCC
Q 037769 143 GLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLL--ASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 143 ~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~--l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+..|..+.++++|++|+|++|.++ +.+|.. ++++++|++|+|++|.+.+..|
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred ccCHhHccCCcccCEeeCcCCCCC---cccccCccccccCCCCEEECCCCccccccc
Confidence 666777777777777777777773 333333 6777777777777777766544
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=3.7e-13 Score=112.66 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=92.1
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.+++ +++.+.. +|.. .+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 45 ~~l~~l~l--~~~~l~~-l~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTF--KNSTMRK-LPAA-LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEE--ESCEESE-ECTH-HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEe--cCCchhh-CChh-HhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 46788888 8888774 4441 467889999999999998875 55688899999999999999987777778899999
Q ss_pred CEEeccCCcCCCCCCchhhh-hcCCCCCCEEecccccCCcCCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLL-ASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~-l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
++|++++|+++ .+|.. +.++++|++|++++|.+.+..|.
T Consensus 120 ~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 120 TVLVLERNDLS----SLPRGIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp CEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CEEECCCCccC----cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence 99999999884 45554 58899999999999998875554
No 80
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.4e-13 Score=100.91 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=85.7
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 134 (200)
|.|+.+.|.+. ...++.|+| ++|.+.+..+. .+.++++|++|+|++|.+++. .+..+..+++|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L--~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L 83 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYL--YDNQITKLEPG--VFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQL 83 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEc--CCCcCCccChh--hhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEE
Confidence 67888888542 357899999 99999987787 899999999999999999985 55567899999999
Q ss_pred eccCCcCCCCCcccccCCCCCCEEeccCCcCCC
Q 037769 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTI 167 (200)
Q Consensus 135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~ 167 (200)
+|++|.+++..+..+..+++|++|+|++|.++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999997666679999999999999999953
No 81
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=7.7e-14 Score=101.69 Aligned_cols=107 Identities=23% Similarity=0.163 Sum_probs=90.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-CcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+. . .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++. .+..+..+++
T Consensus 42 ~~L~~L~l--~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 42 EELEFLST--INVGLTSI--A--NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN 114 (149)
T ss_dssp TTCCEEEC--TTSCCCCC--T--TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTT
T ss_pred CCCcEEEC--cCCCCCCc--h--hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCC
Confidence 68999999 99999865 5 699999999999999999987 788888899999999999999963 3478999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccc
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGA 189 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~ 189 (200)
|++|++++|.+++........+..+++|++|++++
T Consensus 115 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 115 LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999532111114689999999999874
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=119.90 Aligned_cols=109 Identities=26% Similarity=0.222 Sum_probs=92.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+..+. .+.++++|++|++++|.+++. .|..+..+++|++|++++|.++ .+|.. .+++|
T Consensus 52 ~~L~~L~L--s~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSL--SQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASL 123 (562)
T ss_dssp TTCCEEEC--CSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTC
T ss_pred CCcCEEEC--CCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccC
Confidence 57899999 99999877666 789999999999999999886 6788899999999999999998 67776 78999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++|++++|++++ ..+|..++++++|++|++++|.+.+
T Consensus 124 ~~L~Ls~N~l~~--l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 124 RHLDLSFNDFDV--LPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SEEECCSSCCSB--CCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CEEECCCCCccc--cCchHhhcccCcccEEecCCCcccc
Confidence 999999999852 2456788899999999999998864
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=3.9e-14 Score=130.36 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=95.7
Q ss_pred CcEEEEEcccCCCCCee-----------------ccCCCcccc--CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769 76 GNVIGLDLYSSCSWLVG-----------------TIDDNSTLF--HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL 136 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~-----------------~~p~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L 136 (200)
.+++.|+| ++|.+.+ .+|+ .+. ++++|++|+|++|.+.+. +|..+..+++|+.|+|
T Consensus 448 ~~L~~L~L--s~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 448 TKLQIIYF--ANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI 522 (876)
T ss_dssp TTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred CCCCEEEC--cCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence 57899999 9999998 3888 777 999999999999999888 9999999999999999
Q ss_pred cCCc-CCC-CCcccccCCC-------CCCEEeccCCcCCCCCCchhh--hhcCCCCCCEEecccccCCcCCC
Q 037769 137 SASN-FGG-LVPYEMSHSS-------KLTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 137 s~n~-l~~-~~P~~l~~l~-------~L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|. ++| .+|..++.++ +|++|+|++|+++ .+|. .++++++|+.|+|++|.++ .||
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC----ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 9998 887 7887665554 8899999999883 6777 7888888888888888888 677
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=113.88 Aligned_cols=114 Identities=27% Similarity=0.309 Sum_probs=96.7
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh-ccCCCCCCEEeccCCcCCCCCcc--cccCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPY--EMSHS 152 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l 152 (200)
.+++.|++ ++|.+.+..+. .+.++++|++|++++|.+++ +|.. +..+++|++|++++|.+. .+|. .+..+
T Consensus 76 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l 148 (353)
T 2z80_A 76 VNLQALVL--TSNGINTIEED--SFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148 (353)
T ss_dssp TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTC
T ss_pred CCCCEEEC--CCCccCccCHh--hcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccC
Confidence 68999999 99999987777 79999999999999999997 4554 899999999999999998 4555 78899
Q ss_pred CCCCEEeccCCc-CCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 153 SKLTHLDLSFCV-LTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 153 ~~L~~L~Ls~N~-l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
++|++|++++|+ ++ ...+..+..+++|++|++++|.+.+.+|..
T Consensus 149 ~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 149 TKLQILRVGNMDTFT---KIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp TTCCEEEEEESSSCC---EECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCcEEECCCCcccc---ccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 999999999995 52 223567888999999999999998876754
No 85
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.45 E-value=3.6e-13 Score=111.07 Aligned_cols=106 Identities=21% Similarity=0.292 Sum_probs=75.1
Q ss_pred ccccceEecCCCCcEEEEEcccCCC-CCeeccCCCccccCCCCCcEEEccC-CCCCCCCCChhccCCCCCCEEeccCCcC
Q 037769 64 CSWDGVTCDNVTGNVIGLDLYSSCS-WLVGTIDDNSTLFHLSHLQSLNLAY-SNFLGSQLSPEFGRLKELTYLNLSASNF 141 (200)
Q Consensus 64 c~w~gv~c~~~~~~l~~L~L~~~~n-~l~~~~p~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l 141 (200)
|.|.+|.|. ++ +|. .+|. +..+++|+.|+|++ |.+++. .+..|..+++|+.|+|++|+|
T Consensus 8 C~~~~v~~~--------------~~n~l~-~ip~---l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l 68 (347)
T 2ifg_A 8 HGSSGLRCT--------------RDGALD-SLHH---LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGL 68 (347)
T ss_dssp SSSSCEECC--------------SSCCCT-TTTT---SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCC
T ss_pred ccCCEEEcC--------------CCCCCC-ccCC---CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCcc
Confidence 667666664 33 454 3554 66777888888885 888774 446677888888888888888
Q ss_pred CCCCcccccCCCCCCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCC
Q 037769 142 GGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 142 ~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~ 193 (200)
++..|..|.++++|+.|+|++|+|+ .+|. .+..++ |+.|+|.+|++.
T Consensus 69 ~~~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 69 RFVAPDAFHFTPRLSRLNLSFNALE----SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CEECTTGGGSCSCCCEEECCSSCCS----CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ceeCHHHhcCCcCCCEEeCCCCccc----eeCHHHcccCC-ceEEEeeCCCcc
Confidence 8777777788888888888888884 2333 344444 888888888775
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=2.6e-13 Score=121.08 Aligned_cols=109 Identities=21% Similarity=0.186 Sum_probs=49.2
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
++++|++ ++|.+.+..|. .+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..++++++|+
T Consensus 50 ~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 50 QLTSLDV--GFNTISKLEPE--LCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp TCSEEEC--CSSCCCCCCTT--HHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred cCcEEEC--CCCccCccCHH--HHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 4455555 55554444444 444455555555555544432 122344445555555555544433334444444455
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
+|++++|.++ +..|..++++++|++|++++|.++
T Consensus 125 ~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 125 TLDLSHNGLS---STKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp EEECCSSCCS---CCCCCSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCccc---ccCchhhcccccCCEEEccCCccc
Confidence 5555444442 222333344444444444444443
No 87
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=2.9e-13 Score=116.14 Aligned_cols=110 Identities=21% Similarity=0.173 Sum_probs=64.4
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++++|+| ++|.+.+..|. .+.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+.+..|..+..+++|
T Consensus 56 ~~L~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 56 PHLEELEL--NENIVSAVEPG--AFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEEC--CCCccCEeChh--hhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 45667777 77766665565 566667777777777666653 33345666666666666666665555556666666
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++|++++|.++ ...+..+..+++|+.|++++|.++
T Consensus 131 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 131 KSLEVGDNDLV---YISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CEEEECCTTCC---EECTTSSTTCTTCCEEEEESCCCS
T ss_pred CEEECCCCccc---eeChhhccCCCCCCEEECCCCcCc
Confidence 66666666553 222333444444455554444444
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=117.56 Aligned_cols=107 Identities=19% Similarity=0.098 Sum_probs=94.8
Q ss_pred EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769 79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHL 158 (200)
Q Consensus 79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L 158 (200)
+.|++ ++|.++ .+|. .+. ++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 3 ~~l~l--s~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDR--SKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEEC--TTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEec--CCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 47899 999999 6777 565 8999999999999986 66789999999999999999998778899999999999
Q ss_pred eccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc-CCCCC
Q 037769 159 DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL-IKPFS 199 (200)
Q Consensus 159 ~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g-~iP~~ 199 (200)
+|++|+++ .+|.. .+++|++|++++|.+++ .+|..
T Consensus 75 ~Ls~N~l~----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~ 110 (520)
T 2z7x_B 75 DLSHNKLV----KISCH--PTVNLKHLDLSFNAFDALPICKE 110 (520)
T ss_dssp ECCSSCCC----EEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred ecCCCcee----ecCcc--ccCCccEEeccCCccccccchhh
Confidence 99999994 57766 89999999999999987 56653
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.43 E-value=4e-13 Score=118.25 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=50.3
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCCh-hccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+.+. .|. .+..+++|+.|++++|.+.+..|..+..+++
T Consensus 376 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 376 SHLQSLNL--SYNEPLSLKTE--AFKECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTCCEEEC--CSCSCEEECTT--TTTTCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred CCCCEEEC--CCCcCCcCCHH--HhcCCccCCeEECCCCcCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 45666666 66666655555 556666666666666666554 332 2555666666666666665555555555666
Q ss_pred CCEEeccCCcCC
Q 037769 155 LTHLDLSFCVLT 166 (200)
Q Consensus 155 L~~L~Ls~N~l~ 166 (200)
|++|++++|+++
T Consensus 451 L~~L~L~~n~l~ 462 (606)
T 3t6q_A 451 LQHLNLQGNHFP 462 (606)
T ss_dssp CCEEECTTCBCG
T ss_pred CCEEECCCCCCC
Confidence 666666666553
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.41 E-value=7.8e-13 Score=108.32 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=47.5
Q ss_pred CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCE
Q 037769 105 HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL 184 (200)
Q Consensus 105 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~ 184 (200)
+|++|++++|.+++. .|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++
T Consensus 193 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 193 SLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV----KVPGGLADHKYIQV 267 (330)
T ss_dssp TCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS----SCCTTTTTCSSCCE
T ss_pred cCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc----cCChhhccCCCcCE
Confidence 344444444444433 3445555666666666666665444445555666666666666662 45555666666666
Q ss_pred EecccccCCc
Q 037769 185 LYLGATNMSL 194 (200)
Q Consensus 185 L~Ls~N~l~g 194 (200)
|++++|+|++
T Consensus 268 L~l~~N~i~~ 277 (330)
T 1xku_A 268 VYLHNNNISA 277 (330)
T ss_dssp EECCSSCCCC
T ss_pred EECCCCcCCc
Confidence 6666666654
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.3e-13 Score=102.13 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=92.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCC-CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLS-HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
..++.|++ ++|.+. .++. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++
T Consensus 19 ~~L~~L~l--~~n~l~-~i~~---~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 19 VRDRELDL--RGYKIP-VIEN---LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp TSCEEEEC--TTSCCC-SCCC---GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred CCceEEEe--eCCCCc-hhHH---hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 57999999 999998 4554 55555 99999999999986 5 57899999999999999999543344589999
Q ss_pred CCEEeccCCcCCCCCCchhh--hhcCCCCCCEEecccccCCcCCCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
|++|++++|+++ .+|. .+..+++|+.|++++|++. .+|.
T Consensus 90 L~~L~L~~N~i~----~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 90 LTELILTNNSLV----ELGDLDPLASLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp CCEEECCSCCCC----CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred CCEEECCCCcCC----cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence 999999999993 5666 7899999999999999998 4554
No 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=110.83 Aligned_cols=82 Identities=21% Similarity=0.183 Sum_probs=58.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|+| ++|.+.+..+. .|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+....+..+..+++|
T Consensus 88 ~~L~~L~L--s~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 88 RHLEILQL--SRNHIRTIEIG--AFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp SSCCEEEC--CSSCCCEECGG--GGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCCCEEEC--CCCcCCccChh--hccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 57888888 88888766656 678888888888888888764 44467778888888888887774434345555555
Q ss_pred CEEeccC
Q 037769 156 THLDLSF 162 (200)
Q Consensus 156 ~~L~Ls~ 162 (200)
++|+|++
T Consensus 163 ~~L~l~~ 169 (440)
T 3zyj_A 163 RRLDLGE 169 (440)
T ss_dssp CEEECCC
T ss_pred CEeCCCC
Confidence 5555555
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=9.2e-13 Score=107.62 Aligned_cols=106 Identities=19% Similarity=0.045 Sum_probs=55.1
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc-cCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF-GRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
+++.|++ ++|.+.+..+. .+..+++|++|++++|.+++. .+..+ ..+++|++|++++|.+++ +|. ...+++|
T Consensus 121 ~L~~L~l--~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L 193 (317)
T 3o53_A 121 GKKNIYL--ANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKL 193 (317)
T ss_dssp SCEEEEC--CSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTC
T ss_pred CCCEEEC--CCCCCCCccch--hhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccC
Confidence 4555666 66665544444 455566666666666666553 33333 245555555555555552 222 2235555
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 194 ~~L~Ls~N~l~----~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 194 KTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCC
T ss_pred CEEECCCCcCC----cchhhhcccCcccEEECcCCccc
Confidence 55555555552 23344555555555555555555
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=5.1e-13 Score=117.79 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=77.0
Q ss_pred CCCCCCCCCc-----cccce-EecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCC
Q 037769 55 NSWTEGTDCC-----SWDGV-TCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRL 128 (200)
Q Consensus 55 ~~W~~~~~~c-----~w~gv-~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l 128 (200)
..|..+..+| .|.|+ .|.. .+++.|++ ++|.+.+ +|. .+ +++|++|++++|.++. +| ..+
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~L--s~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l 99 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQL--NRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELP 99 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEEC--CSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCC
T ss_pred HHHhccCCccccccchhhhcccccc--CCccEEEe--CCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---ccc
Confidence 3465555667 79999 6764 57899999 9999886 666 45 3778888888888874 66 456
Q ss_pred CCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 129 KELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
++|++|++++|.+++ +|. +.. +|++|+|++|++++ +|. .+++|++|+|++|.|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM----LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC----CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC----CCC---cCccccEEeCCCCccCc
Confidence 777888888877775 665 543 66666666666642 333 34555555555555553
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=111.18 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=20.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNF 116 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l 116 (200)
.+++.|++ ++|.+.+..+. .+..+++|++|++++|.+
T Consensus 145 ~~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 145 PGLKVLSI--AQAHSPAFSCE--QVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp SCCCEEEE--ECCSSCCCCTT--SCCCCTTCCEEECCSCTT
T ss_pred cCCCEEEe--eCCCcchhhHH--HhccCCCCCEEECCCCCC
Confidence 35556666 66665544444 455555555555555554
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.39 E-value=1.2e-12 Score=114.62 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=75.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCCccc-ccCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLVPYE-MSHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~P~~-l~~l~ 153 (200)
.+++.|++ ++|.+.+.++. .+.++++|++|++++|.+++.+ +|..+..+++|+.|++++|.+++.+|.. +..++
T Consensus 353 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 353 SSFTFLNF--TQNVFTDSVFQ--GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CCCCEEEC--CSSCCCTTTTT--TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred CCceEEEC--CCCccccchhh--hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 56777777 77777766666 6777777777777777776520 2345667777777777777776545542 44444
Q ss_pred CCCEEeccCCcCCCC------------------CCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769 154 KLTHLDLSFCVLTIE------------------HRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 154 ~L~~L~Ls~N~l~~~------------------~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
+|++|++++|++++. ...+|..+..+++|++|++++|+++ .||..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 444444444444210 0246666667788888888888887 46653
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=111.20 Aligned_cols=118 Identities=20% Similarity=0.021 Sum_probs=60.8
Q ss_pred cEEEEEcccCCCCCeeccCCCccc--cCCCCCcEEEccCCCCCCCCCC----hhccCCCCCCEEeccCCcCCCCCccccc
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTL--FHLSHLQSLNLAYSNFLGSQLS----PEFGRLKELTYLNLSASNFGGLVPYEMS 150 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l--~~l~~L~~L~L~~n~l~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~P~~l~ 150 (200)
++++|++ ++|.+.+..|. .+ ..+++|++|++++|.+++. .+ ..+..+++|++|++++|.+.+..|..+.
T Consensus 92 ~L~~L~l--~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTL--EDLKITGTMPP--LPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEE--ESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEe--eCCEeccchhh--hhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 3666666 66666655555 44 4555555555555555443 22 1222344455555555544444444444
Q ss_pred CCCCCCEEeccCCcCCCC------------------------CCchhh----hhcCCCCCCEEecccccCCcCCCCC
Q 037769 151 HSSKLTHLDLSFCVLTIE------------------------HRTFDL----LASNLTKLSLLYLGATNMSLIKPFS 199 (200)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~------------------------~~~lp~----~l~~l~~L~~L~Ls~N~l~g~iP~~ 199 (200)
.+++|++|+|++|++.+. ...++. .++.+++|++|+|++|.+.+.+|..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 444444444444443210 012232 2466777888888888887766643
No 98
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=2e-12 Score=110.52 Aligned_cols=82 Identities=21% Similarity=0.158 Sum_probs=63.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|+| ++|.+.+..+. .+.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+....+..+..+++|
T Consensus 99 ~~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 99 HHLEVLQL--GRNSIRQIEVG--AFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCCCEEEC--CCCccCCcChh--hccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 57899999 99998877777 788899999999999998875 45558888899999999888874444455555555
Q ss_pred CEEeccC
Q 037769 156 THLDLSF 162 (200)
Q Consensus 156 ~~L~Ls~ 162 (200)
+.|++++
T Consensus 174 ~~L~l~~ 180 (452)
T 3zyi_A 174 MRLDLGE 180 (452)
T ss_dssp CEEECCC
T ss_pred cEEeCCC
Confidence 5555555
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.38 E-value=4.3e-13 Score=105.15 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=72.1
Q ss_pred CcEEEEEcccCCCC-CeeccCCCccccCCCCCcEEEccC-CCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCC
Q 037769 76 GNVIGLDLYSSCSW-LVGTIDDNSTLFHLSHLQSLNLAY-SNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153 (200)
Q Consensus 76 ~~l~~L~L~~~~n~-l~~~~p~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~ 153 (200)
.+++.|++ ++|. +....+. .+.++++|++|++++ |.++.. .+..+..+++|++|++++|.+++ +|. +..++
T Consensus 55 ~~L~~L~l--~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 55 PNISRIYV--SIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TTCCEEEE--ECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred CCCcEEeC--CCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 46777777 7775 6644444 567777777777776 777653 34556677777777777777764 555 66666
Q ss_pred CCC---EEeccCC-cCCCCCCchh-hhhcCCCCCC-EEecccccCCcCCCC
Q 037769 154 KLT---HLDLSFC-VLTIEHRTFD-LLASNLTKLS-LLYLGATNMSLIKPF 198 (200)
Q Consensus 154 ~L~---~L~Ls~N-~l~~~~~~lp-~~l~~l~~L~-~L~Ls~N~l~g~iP~ 198 (200)
+|+ +|++++| .++ .+| ..+..+++|+ +|++++|+++ .||.
T Consensus 128 ~L~~L~~L~l~~N~~l~----~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 128 STDIFFILEITDNPYMT----SIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp BCCSEEEEEEESCTTCC----EECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred ccccccEEECCCCcchh----hcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 666 7777777 663 233 3366666777 7777777666 4554
No 100
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=8.2e-13 Score=108.38 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=58.8
Q ss_pred CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCC
Q 037769 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLS 183 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~ 183 (200)
++|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..+++|+
T Consensus 193 ~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC----BCCTTGGGCTTCC
T ss_pred CCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe----ecChhhhcCccCC
Confidence 4566666666666654 4456667777777777777777655556777777777777777773 5666677777777
Q ss_pred EEecccccCCc
Q 037769 184 LLYLGATNMSL 194 (200)
Q Consensus 184 ~L~Ls~N~l~g 194 (200)
+|++++|++++
T Consensus 268 ~L~l~~N~l~~ 278 (332)
T 2ft3_A 268 VVYLHTNNITK 278 (332)
T ss_dssp EEECCSSCCCB
T ss_pred EEECCCCCCCc
Confidence 77777777764
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.9e-12 Score=114.11 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=91.4
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCC-cccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLV-PYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-P~~l~~l~~ 154 (200)
.+++.|+| ++|.+. .+|. .+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..++.+++
T Consensus 463 ~~L~~L~L--s~N~l~-~lp~--~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 463 LLVTHLDL--SHNRLR-ALPP--ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp TTCCEEEC--CSSCCC-CCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred ccCcEeec--Cccccc-ccch--hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 57999999 999999 8888 89999999999999999997 67 8999999999999999999776 999999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEec
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~L 187 (200)
|+.|+|++|++++........+..+++|+.|++
T Consensus 535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999997543333344566899999874
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=1e-12 Score=107.35 Aligned_cols=106 Identities=19% Similarity=0.158 Sum_probs=92.4
Q ss_pred CcEEEEEcccCCCCCeeccCCCccc-cCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTL-FHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l-~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+..+. .+ ..+++|++|++++|.+++ ++. ...+++|+.|++++|.++ .+|..+..+++
T Consensus 144 ~~L~~L~L--s~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 215 (317)
T 3o53_A 144 SRVQYLDL--KLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215 (317)
T ss_dssp SSEEEEEC--TTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTT
T ss_pred CCCCEEEC--CCCCCCcccHH--HHhhccCcCCEEECCCCcCcc--ccc-ccccccCCEEECCCCcCC-cchhhhcccCc
Confidence 57999999 99999977666 55 478999999999999986 443 446999999999999999 46666999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
|+.|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus 216 L~~L~L~~N~l~----~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 216 VTWISLRNNKLV----LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CSEEECTTSCCC----EECTTCCCCTTCCEEECTTCCCB
T ss_pred ccEEECcCCccc----chhhHhhcCCCCCEEEccCCCcc
Confidence 999999999994 57888999999999999999998
No 103
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=6.7e-12 Score=94.25 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=76.2
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
..++.|+| ++|.+.+..+. .+.++++|++|+|++|.+++. .+..+..+++|++|+|++|.+++..+..+..+++|
T Consensus 33 ~~L~~L~L--s~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWL--NNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEe--CCCCccccCHH--HhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence 57899999 99999988787 899999999999999999984 44456899999999999999996555569999999
Q ss_pred CEEeccCCcCC
Q 037769 156 THLDLSFCVLT 166 (200)
Q Consensus 156 ~~L~Ls~N~l~ 166 (200)
++|+|++|.+.
T Consensus 108 ~~L~L~~N~~~ 118 (174)
T 2r9u_A 108 THIYLYNNPWD 118 (174)
T ss_dssp SEEECCSSCBC
T ss_pred CEEEeCCCCcc
Confidence 99999999995
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.32 E-value=8.7e-12 Score=101.61 Aligned_cols=102 Identities=20% Similarity=0.319 Sum_probs=45.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++. +. +..+++|
T Consensus 85 ~~L~~L~L--~~n~l~~-~~---~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L 153 (308)
T 1h6u_A 85 TKITELEL--SGNPLKN-VS---AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNL 153 (308)
T ss_dssp CSCCEEEC--CSCCCSC-CG---GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTC
T ss_pred CCCCEEEc--cCCcCCC-ch---hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCc
Confidence 34555555 5555442 22 24445555555555555543 222 44455555555555554422 22 4444444
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
++|++++|.++ .++. +..+++|+.|++++|.++
T Consensus 154 ~~L~l~~n~l~----~~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 154 QYLSIGNAQVS----DLTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CEEECCSSCCC----CCGG-GTTCTTCCEEECCSSCCC
T ss_pred cEEEccCCcCC----CChh-hcCCCCCCEEECCCCccC
Confidence 44444444442 1222 344444444444444443
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=1.8e-12 Score=112.13 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=94.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|++ ++|.+.+..+. .+. .+++|+.|+|++|.+++ +|. +..+++|+.|+|++|.+++ +|+.+..+++
T Consensus 144 ~~L~~L~L--s~N~l~~~~~~--~l~~~l~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~ 215 (487)
T 3oja_A 144 SRVQYLDL--KLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215 (487)
T ss_dssp SSEEEEEC--TTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred CCCCEEEC--CCCCCCCcChH--HHhhhCCcccEEecCCCcccc--ccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCC
Confidence 58999999 99999988877 665 79999999999999987 443 4569999999999999996 5566899999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
|+.|+|++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 216 L~~L~Ls~N~l~----~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 216 VTWISLRNNKLV----LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSEEECTTSCCC----EECTTCCCCTTCCEEECTTCCBC
T ss_pred ccEEEecCCcCc----ccchhhccCCCCCEEEcCCCCCc
Confidence 999999999995 47888999999999999999987
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=8.8e-12 Score=101.58 Aligned_cols=103 Identities=24% Similarity=0.336 Sum_probs=60.9
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|
T Consensus 107 ~~L~~L~l--~~n~l~~-~~---~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L 175 (308)
T 1h6u_A 107 QSIKTLDL--TSTQITD-VT---PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKL 175 (308)
T ss_dssp TTCCEEEC--TTSCCCC-CG---GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTC
T ss_pred CCCCEEEC--CCCCCCC-ch---hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCC
Confidence 46777777 7777764 33 26666777777777776665 333 5666666666666666663 333 5566666
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
+.|++++|+++ .++. +..+++|++|++++|++++
T Consensus 176 ~~L~l~~n~l~----~~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 176 TTLKADDNKIS----DISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CEEECCSSCCC----CCGG-GGGCTTCCEEECTTSCCCB
T ss_pred CEEECCCCccC----cChh-hcCCCCCCEEEccCCccCc
Confidence 66666666663 1222 4555555555555555553
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=1.3e-11 Score=98.46 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=82.4
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+ +++ +..+++|++|++++|.+++ +|. +.. ++|+.|++++|.+++ ++ .+..+++|
T Consensus 63 ~~L~~L~L--~~N~i~~-~~~---l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L 130 (263)
T 1xeu_A 63 TNLKELHL--SHNQISD-LSP---LKDLTKLEELSVNRNRLKN--LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNL 130 (263)
T ss_dssp TTCCEEEC--CSSCCCC-CGG---GTTCSSCCEEECCSSCCSC--CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred CCCCEEEC--CCCccCC-Chh---hccCCCCCEEECCCCccCC--cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccc
Confidence 57888999 8888874 333 7788899999999998886 454 333 889999999998885 44 58889999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~ 195 (200)
+.|++++|+++ .++ .+..+++|++|++++|++++.
T Consensus 131 ~~L~Ls~N~i~----~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 131 EILSIRNNKLK----SIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CEEECTTSCCC----BCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred cEEECCCCcCC----CCh-HHccCCCCCEEECCCCcCcch
Confidence 99999999995 344 588899999999999998864
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=1.1e-11 Score=100.29 Aligned_cols=102 Identities=25% Similarity=0.257 Sum_probs=55.8
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.|++ ++|.+.+ ++ .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 91 ~L~~L~l--~~n~l~~-~~---~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 91 NLGWLFL--DENKVKD-LS---SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp TCCEEEC--CSSCCCC-GG---GGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred CCCEEEC--CCCcCCC-Ch---hhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 4444555 4444442 22 24555555555555555553 2 2355556666666666665532 3455666666
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
+|++++|.++ .++. +..+++|++|++++|.+++
T Consensus 160 ~L~L~~N~l~----~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 160 TLSLEDNQIS----DIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EEECCSSCCC----CCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EEEccCCccc----cchh-hcCCCccCEEECCCCcCCC
Confidence 6666666663 2222 6666677777777776654
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=1e-11 Score=100.46 Aligned_cols=103 Identities=25% Similarity=0.345 Sum_probs=90.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+ + + .+..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++..| +..+++|
T Consensus 112 ~~L~~L~L--~~n~i~~-~-~--~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 112 KKLKSLSL--EHNGISD-I-N--GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180 (291)
T ss_dssp TTCCEEEC--TTSCCCC-C-G--GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred CCCCEEEC--CCCcCCC-C-h--hhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence 68999999 9999985 3 3 58899999999999999986 4 578999999999999999996544 8999999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
+.|++++|.++ .++. +..+++|+.|++++|++..
T Consensus 181 ~~L~L~~N~i~----~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHIS----DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCC----BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCC----CChh-hccCCCCCEEECcCCcccC
Confidence 99999999995 3554 8999999999999999874
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=1.7e-11 Score=97.86 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=83.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+ ++. +.. ++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ .+..+++|
T Consensus 85 ~~L~~L~L--~~N~l~~-l~~---~~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L 152 (263)
T 1xeu_A 85 TKLEELSV--NRNRLKN-LNG---IPS-ACLSRLFLDNNELRD--TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKL 152 (263)
T ss_dssp SSCCEEEC--CSSCCSC-CTT---CCC-SSCCEEECCSSCCSB--SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTC
T ss_pred CCCCEEEC--CCCccCC-cCc---ccc-CcccEEEccCCccCC--Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCC
Confidence 57889999 9998884 444 333 889999999999886 44 58889999999999999985 44 57888999
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~ 195 (200)
+.|++++|++++ + ..+..+++|+.|++++|++.+.
T Consensus 153 ~~L~L~~N~i~~----~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 EVLDLHGNEITN----T-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CEEECTTSCCCB----C-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CEEECCCCcCcc----h-HHhccCCCCCEEeCCCCcccCC
Confidence 999999999953 2 5678889999999999988754
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=2.4e-11 Score=99.83 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=75.8
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+ ++. +..+++|++|++++|.++. + +.+..+++|+.|++++|.+++ + +.+..+++|
T Consensus 221 ~~L~~L~l--~~n~l~~-~~~---~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 289 (347)
T 4fmz_A 221 TRLNSLKI--GNNKITD-LSP---LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQL 289 (347)
T ss_dssp TTCCEEEC--CSSCCCC-CGG---GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTC
T ss_pred CcCCEEEc--cCCccCC-Ccc---hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCC
Confidence 45677777 7776653 222 5667777777777777765 3 356777778888888877774 3 346777788
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
+.|++++|.++ ...|..+..+++|++|++++|++++..|
T Consensus 290 ~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 290 NSLFLNNNQLG---NEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SEEECCSSCCC---GGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CEEECcCCcCC---CcChhHhhccccCCEEEccCCccccccC
Confidence 88888888773 4556677888888888888888876544
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.25 E-value=1.5e-11 Score=101.04 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769 75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
..+++.|++ ++|.+.+ + + .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+.+..|..+..+++
T Consensus 242 l~~L~~L~l--~~n~l~~-~-~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 242 LSQLTWLEI--GTNQISD-I-N--AVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp CTTCCEEEC--CSSCCCC-C-G--GGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred CCCCCEEEC--CCCccCC-C-h--hHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 368999999 9999885 3 3 58899999999999999986 4 45889999999999999999888888999999
Q ss_pred CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
|++|++++|+++ . +++ +..+++|++|++++|.|+
T Consensus 313 L~~L~L~~n~l~---~-~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHIT---D-IRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCC---C-CGG-GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccc---c-ccC-hhhhhccceeehhhhccc
Confidence 999999999995 3 333 889999999999999885
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=4.1e-11 Score=102.90 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=51.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+. .+..+++|++|++++|.+++ ++ ++.+++|++|++++|.+++ +| ++.+++|
T Consensus 64 ~~L~~L~L--s~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 64 TGLTKLIC--TSNNITTL-----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp TTCSEEEC--CSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred CCCCEEEc--cCCcCCeE-----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence 34555555 55555431 14455555555555555554 22 4555555555555555553 32 4555555
Q ss_pred CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i 196 (200)
++|++++|++++ ++ ++.+++|++|++++|+..+.+
T Consensus 130 ~~L~l~~N~l~~----l~--l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 130 TYLNCARNTLTE----ID--VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp CEEECTTSCCSC----CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred CEEECCCCccce----ec--cccCCcCCEEECCCCCccccc
Confidence 555555555532 21 455555666666665444433
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=5.3e-14 Score=107.54 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=93.7
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.+++.|++ ++|.+.+ +|. +..+++|++|++++|.++. +|..+..+++|+.|++++|.+++ +| .+..+++|
T Consensus 48 ~~L~~L~l--s~n~l~~-l~~---~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 48 KACKHLAL--STNNIEK-ISS---LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp TTCSEEEC--SEEEESC-CCC---HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred CCCCEEEC--CCCCCcc-ccc---cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 57999999 9999886 554 8899999999999999985 78888888999999999999995 56 68889999
Q ss_pred CEEeccCCcCCCCCCchh--hhhcCCCCCCEEecccccCCcCCCC
Q 037769 156 THLDLSFCVLTIEHRTFD--LLASNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~~~lp--~~l~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
++|++++|+++ .++ ..+..+++|++|++++|++.+.+|.
T Consensus 118 ~~L~l~~N~i~----~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 118 RVLYMSNNKIT----NWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEESEEECC----CHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECCCCcCC----chhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999994 344 4789999999999999999876553
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=5.6e-11 Score=105.51 Aligned_cols=85 Identities=27% Similarity=0.374 Sum_probs=47.2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC
Q 037769 100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL 179 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l 179 (200)
+..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++ .+| .+..+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~----~l~-~l~~l 196 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS----DLR-ALAGL 196 (605)
T ss_dssp GGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC----BCG-GGTTC
T ss_pred ccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC----CCh-HHccC
Confidence 4455555555555555543 2 345555566666666666554333 555666666666666663 222 35666
Q ss_pred CCCCEEecccccCCc
Q 037769 180 TKLSLLYLGATNMSL 194 (200)
Q Consensus 180 ~~L~~L~Ls~N~l~g 194 (200)
++|+.|+|++|++.+
T Consensus 197 ~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 197 KNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSEEEEC
T ss_pred CCCCEEEccCCcCcC
Confidence 666666666666654
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=9.6e-12 Score=109.69 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=47.5
Q ss_pred CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC-------CEEeccCCcCCCCCCchhhhh
Q 037769 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL-------THLDLSFCVLTIEHRTFDLLA 176 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L-------~~L~Ls~N~l~~~~~~lp~~l 176 (200)
++|++|++++|.+++ +|. +. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|+++ .+|..+
T Consensus 160 ~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~----~lp~~l 226 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT----HIPENI 226 (571)
T ss_dssp TTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC----CCCGGG
T ss_pred CCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce----ecCHHH
Confidence 344444444444443 333 33 55555555555555 4454 333 45 66666666663 467767
Q ss_pred cCCCCCCEEecccccCCcCCCC
Q 037769 177 SNLTKLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 177 ~~l~~L~~L~Ls~N~l~g~iP~ 198 (200)
..+++|+.|+|++|++++.+|.
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHH
Confidence 7788888888888888776654
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=8.3e-11 Score=104.39 Aligned_cols=102 Identities=25% Similarity=0.259 Sum_probs=60.1
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.|+| ++|.+.+ ++ .+..+++|+.|+|++|.+.. + +.+..+++|+.|+|++|.+++. ..+..+++|+
T Consensus 88 ~L~~L~L--s~N~l~~-l~---~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 88 NLGWLFL--DENKIKD-LS---SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp TCCEEEC--CSSCCCC-CT---TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred CCCEEEC--cCCCCCC-Ch---hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 4555555 5555542 22 35556666666666666654 2 2355666666666666666643 4466666677
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
.|+|++|.++ . ++. +..+++|+.|+|++|+|++
T Consensus 157 ~L~Ls~N~l~---~-~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 157 TLSLEDNQIS---D-IVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EEECCSSCCC---C-CGG-GTTCTTCCEEECCSSCCCB
T ss_pred EEECcCCcCC---C-chh-hccCCCCCEEECcCCCCCC
Confidence 7777776663 2 222 6677777777777777664
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=8.6e-13 Score=107.96 Aligned_cols=109 Identities=28% Similarity=0.266 Sum_probs=47.1
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCC-CCCCCCCChhccCCCCCCEEeccCC-cCCCC-CcccccCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYS-NFLGSQLSPEFGRLKELTYLNLSAS-NFGGL-VPYEMSHSS 153 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~P~~l~~l~ 153 (200)
++++|++ ++|.+.+..+. .+..+++|++|++++| .+++..++..+..+++|+.|++++| .+++. ++..+..++
T Consensus 119 ~L~~L~L--~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 119 KLQNLSL--EGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp CCSEEEC--TTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CCCEEeC--cCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 3444444 44444433333 3444444444444444 3332112333444444444444444 44422 333344444
Q ss_pred -CCCEEeccCC--cCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769 154 -KLTHLDLSFC--VLTIEHRTFDLLASNLTKLSLLYLGATN 191 (200)
Q Consensus 154 -~L~~L~Ls~N--~l~~~~~~lp~~l~~l~~L~~L~Ls~N~ 191 (200)
+|++|++++| .++ ...+|..+..+++|++|++++|.
T Consensus 195 ~~L~~L~l~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQ--KSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp TTCCEEECCSCGGGSC--HHHHHHHHHHCTTCSEEECTTCT
T ss_pred cCCCEEEeCCCcccCC--HHHHHHHHhhCCCCCEEeCCCCC
Confidence 4555555444 232 12334444445555555555554
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.19 E-value=3.5e-12 Score=104.27 Aligned_cols=110 Identities=21% Similarity=0.267 Sum_probs=54.7
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
+++.+++ ++|.+.+..+. +..+++|++|++++|.+++..+|..+..+++|++|++++|.+++..|..++.+++|+
T Consensus 71 ~l~~L~l--~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 71 GVIAFRC--PRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TCSEEEC--TTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred cceEEEc--CCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 4455555 55555444333 344555555555555554321344455555555555555555544455555555555
Q ss_pred EEeccCC-cCCCCCCchhhhhcCCCCCCEEecccc-cCC
Q 037769 157 HLDLSFC-VLTIEHRTFDLLASNLTKLSLLYLGAT-NMS 193 (200)
Q Consensus 157 ~L~Ls~N-~l~~~~~~lp~~l~~l~~L~~L~Ls~N-~l~ 193 (200)
+|++++| .+++ ..++..+..+++|++|++++| .++
T Consensus 146 ~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 146 RLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp EEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred EEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 5555555 3421 123444455555555555555 444
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.19 E-value=9.5e-11 Score=100.40 Aligned_cols=96 Identities=24% Similarity=0.357 Sum_probs=45.0
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~ 156 (200)
++++|++ ++|.+.+ +++ +..+++|++|++++|.+.+ +++ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 69 ~L~~L~L--s~n~l~~-~~~---~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~ 137 (466)
T 1o6v_A 69 NLTQINF--SNNQLTD-ITP---LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLN 137 (466)
T ss_dssp TCCEEEC--CSSCCCC-CGG---GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCS
T ss_pred CCCEEEC--CCCccCC-chh---hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCC
Confidence 4455555 5554442 221 4445555555555555544 222 4555555555555555543 222 44555555
Q ss_pred EEeccCCcCCCCCCchhhhhcCCCCCCEEecc
Q 037769 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG 188 (200)
Q Consensus 157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls 188 (200)
+|++++|.++ .++ .+..+++|++|+++
T Consensus 138 ~L~l~~n~l~----~~~-~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 138 RLELSSNTIS----DIS-ALSGLTSLQQLSFG 164 (466)
T ss_dssp EEEEEEEEEC----CCG-GGTTCTTCSEEEEE
T ss_pred EEECCCCccC----CCh-hhccCCcccEeecC
Confidence 5555555552 122 24455555555553
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.19 E-value=7.9e-11 Score=100.91 Aligned_cols=60 Identities=32% Similarity=0.392 Sum_probs=24.5
Q ss_pred cCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769 101 FHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL 165 (200)
Q Consensus 101 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l 165 (200)
..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+++..| +..+++|+.|++++|++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDI--SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp TTCTTCSEEECCSSCCSCC--GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred cCCCccCeEEcCCCcccCc--hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 3344444444444444432 11 3344444444444444443322 33344444444444444
No 122
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=5.5e-11 Score=97.90 Aligned_cols=85 Identities=15% Similarity=0.079 Sum_probs=74.2
Q ss_pred cEEEccCC-CCCCCCCChhccCCCCCCEEeccC-CcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCE
Q 037769 107 QSLNLAYS-NFLGSQLSPEFGRLKELTYLNLSA-SNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL 184 (200)
Q Consensus 107 ~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~ 184 (200)
..++++++ .++. +|. +..+++|+.|+|++ |.+++..|..|.++++|+.|+|++|+|+ +..|..|.+|++|++
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC---EECTTGGGSCSCCCE
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc---eeCHHHhcCCcCCCE
Confidence 45688888 8886 788 99999999999996 9999777788999999999999999995 445667899999999
Q ss_pred EecccccCCcCCCC
Q 037769 185 LYLGATNMSLIKPF 198 (200)
Q Consensus 185 L~Ls~N~l~g~iP~ 198 (200)
|+|++|+|++ +|+
T Consensus 85 L~l~~N~l~~-~~~ 97 (347)
T 2ifg_A 85 LNLSFNALES-LSW 97 (347)
T ss_dssp EECCSSCCSC-CCS
T ss_pred EeCCCCccce-eCH
Confidence 9999999996 554
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=4.6e-12 Score=105.91 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=72.8
Q ss_pred cEEEEEcccCCCCCe--e---ccCCCccccCCCCCcEEEccCCCCC----CCCCChhccCCCCCCEEeccCCcCCCC---
Q 037769 77 NVIGLDLYSSCSWLV--G---TIDDNSTLFHLSHLQSLNLAYSNFL----GSQLSPEFGRLKELTYLNLSASNFGGL--- 144 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~--~---~~p~~~~l~~l~~L~~L~L~~n~l~----~~~~p~~l~~l~~L~~L~Ls~n~l~~~--- 144 (200)
+++.|++ ++|.+. | ..+. .+..+++|++|+|++|.++ .. +|..+..+++|+.|+|++|.+++.
T Consensus 188 ~L~~L~L--~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 188 LLHTVKM--VQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSA-LAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp TCCEEEC--CSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHH-HHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred CcCEEEC--cCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHH-HHHHHccCCCcCEEECCCCCCchhhHH
Confidence 5666666 666665 2 2343 4566777777777777764 33 566667777777777777777654
Q ss_pred -Ccccc--cCCCCCCEEeccCCcCCCC-CCchhhhh-cCCCCCCEEecccccCCcCC
Q 037769 145 -VPYEM--SHSSKLTHLDLSFCVLTIE-HRTFDLLA-SNLTKLSLLYLGATNMSLIK 196 (200)
Q Consensus 145 -~P~~l--~~l~~L~~L~Ls~N~l~~~-~~~lp~~l-~~l~~L~~L~Ls~N~l~g~i 196 (200)
+|..+ +.+++|++|+|++|.+++. ...+|..+ .++++|++|++++|++++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 44555 3377777777777777310 00266665 55777888888888777654
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.17 E-value=3.9e-11 Score=102.96 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=48.2
Q ss_pred CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC----
Q 037769 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL---- 179 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l---- 179 (200)
++|++|++++|.+++ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|++++. ..+|..++.+
T Consensus 317 ~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l-~~ip~~l~~L~~n~ 386 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF-PDIPESVEDLRMNS 386 (454)
T ss_dssp TTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC-CCCCTTCCEEECCC
T ss_pred CcCCEEECCCCcccc--cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcC-CCChHHHHhhhhcc
Confidence 467777777777775 5543 577888888888887 4666 467889999999988642 2567777766
Q ss_pred ---------CCCCEEecccccCCc--CCCCCC
Q 037769 180 ---------TKLSLLYLGATNMSL--IKPFSL 200 (200)
Q Consensus 180 ---------~~L~~L~Ls~N~l~g--~iP~~~ 200 (200)
++|++|++++|+++| .||.++
T Consensus 387 ~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 387 HLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp --------------------------------
T ss_pred cccccccccCcCCEEECCCCcCCccccchhhH
Confidence 788999999999887 788653
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=4e-11 Score=99.19 Aligned_cols=129 Identities=17% Similarity=0.155 Sum_probs=94.2
Q ss_pred ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCCh-hccCCCCCCE
Q 037769 64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTY 133 (200)
Q Consensus 64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~ 133 (200)
|.|..|.|.+. ...+++|+| ++|.|+...+. .|.++++|++|+|++|.+.+. +|. .|.++++++.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~L--s~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRF--VLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEE--ESCCCSEECTT--SSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEc--cCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhh
Confidence 68888999642 247899999 99999854445 689999999999999998765 554 5778888765
Q ss_pred -EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCC---------------------chh-hhhcCC-CCCCEEeccc
Q 037769 134 -LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHR---------------------TFD-LLASNL-TKLSLLYLGA 189 (200)
Q Consensus 134 -L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~---------------------~lp-~~l~~l-~~L~~L~Ls~ 189 (200)
+.+..|++....|..+..+++|++|++++|+++.... .+| ..+..+ ..++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 5667788986667788999999999999998853210 111 123333 3567788888
Q ss_pred ccCCcCCCC
Q 037769 190 TNMSLIKPF 198 (200)
Q Consensus 190 N~l~g~iP~ 198 (200)
|+|+. ||.
T Consensus 164 N~i~~-i~~ 171 (350)
T 4ay9_X 164 NGIQE-IHN 171 (350)
T ss_dssp SCCCE-ECT
T ss_pred ccccC-CCh
Confidence 88773 554
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.16 E-value=2.1e-11 Score=108.52 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=60.4
Q ss_pred CCCCCCCCCCccccceEe------cCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccC
Q 037769 54 TNSWTEGTDCCSWDGVTC------DNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGR 127 (200)
Q Consensus 54 ~~~W~~~~~~c~w~gv~c------~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~ 127 (200)
...|....++|.|+|..+ ......++.|++ ++|.++ .+|. .+. ++|++|++++|.++. +|. .
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~l--s~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---~ 79 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNV--GESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---L 79 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEEC--CSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---C
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEe--cCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---c
Confidence 345766678899966431 111134777888 777777 6665 443 677777777777764 554 4
Q ss_pred CCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCC
Q 037769 128 LKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166 (200)
Q Consensus 128 l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~ 166 (200)
+++|++|+|++|.++ .+|. .+++|++|+|++|+++
T Consensus 80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 566777777777766 3554 4455666666666553
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=3.3e-10 Score=97.22 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=51.7
Q ss_pred ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC
Q 037769 100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL 179 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l 179 (200)
+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| ++.+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~----ip--~~~l 232 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE----ID--VTPL 232 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC----CC--CTTC
T ss_pred cccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc----cC--cccc
Confidence 4455566666666666655 33 55566666666666666643 25666677777777777742 44 5667
Q ss_pred CCCCEEecccccCCcC
Q 037769 180 TKLSLLYLGATNMSLI 195 (200)
Q Consensus 180 ~~L~~L~Ls~N~l~g~ 195 (200)
++|++|++++|++++.
T Consensus 233 ~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTEL 248 (457)
T ss_dssp TTCSEEECCSSCCSCC
T ss_pred CCCCEEEeeCCcCCCc
Confidence 7777777777777653
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=2.8e-13 Score=103.47 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=86.8
Q ss_pred cEEEEEcccCCCCCeeccC------CCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccccc
Q 037769 77 NVIGLDLYSSCSWLVGTID------DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMS 150 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p------~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~ 150 (200)
.++.+++ +.+.+.|.+| . .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 19 ~l~~l~l--~~~~l~~~~~~l~~l~~--~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 19 SVVATEA--EKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp CCCCTTC--SEEECCBCCTTCCCCHH--HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred cccCcch--heeEeccccCcHhhhhH--HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3444445 5555554443 3 57889999999999999987 67 8899999999999999999 7888888
Q ss_pred CCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769 151 HSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
.+++|++|++++|+++ .+| .+..+++|++|++++|++++
T Consensus 91 ~~~~L~~L~L~~N~l~----~l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 91 VADTLEELWISYNQIA----SLS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHHHCSEEEEEEEECC----CHH-HHHHHHHSSEEEESEEECCC
T ss_pred cCCcCCEEECcCCcCC----cCC-ccccCCCCCEEECCCCcCCc
Confidence 8899999999999994 466 58889999999999999984
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.13 E-value=1.1e-10 Score=104.00 Aligned_cols=82 Identities=21% Similarity=0.119 Sum_probs=65.7
Q ss_pred CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCC
Q 037769 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLS 183 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~ 183 (200)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+
T Consensus 221 ~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~----~lp~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT----RLPESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC----SCCGGGGGSCTTC
T ss_pred CCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC----cCCHHHhhccccC
Confidence 567777888887776 45 45678888888888887 5665 5678999999999883 6788899999999
Q ss_pred EEecccccCCcCCCC
Q 037769 184 LLYLGATNMSLIKPF 198 (200)
Q Consensus 184 ~L~Ls~N~l~g~iP~ 198 (200)
.|+|++|+++|.+|.
T Consensus 288 ~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 288 TVNLEGNPLSERTLQ 302 (622)
T ss_dssp EEECCSCCCCHHHHH
T ss_pred EEEecCCCCCCcCHH
Confidence 999999999886653
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.06 E-value=3e-11 Score=100.93 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=74.3
Q ss_pred CcEEEEEcccCCCCCe-eccC---CCccccCCCCCcEEEccCCCCCCCC----CChhccCCCCCCEEeccCCcCC----C
Q 037769 76 GNVIGLDLYSSCSWLV-GTID---DNSTLFHLSHLQSLNLAYSNFLGSQ----LSPEFGRLKELTYLNLSASNFG----G 143 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~-~~~p---~~~~l~~l~~L~~L~L~~n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~----~ 143 (200)
.+++.|++ ++|.+. +.++ . .+..+++|++|++++|.++... .|..+..+++|+.|+|++|.++ +
T Consensus 159 ~~L~~L~L--~~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 159 PPLRSIIC--GRNRLENGSMKEWAK--TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp CCCCEEEC--CSSCCTGGGHHHHHH--HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred CCCcEEEC--CCCCCCcHHHHHHHH--HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 35667777 666665 2233 2 3556677777777777776210 2335667777888888888774 4
Q ss_pred CCcccccCCCCCCEEeccCCcCCCC-CCchhhhhc--CCCCCCEEecccccCCc
Q 037769 144 LVPYEMSHSSKLTHLDLSFCVLTIE-HRTFDLLAS--NLTKLSLLYLGATNMSL 194 (200)
Q Consensus 144 ~~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~--~l~~L~~L~Ls~N~l~g 194 (200)
.+|..+..+++|++|+|++|.+++. ...++..+. .+++|++|+|++|.+++
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 5677777777888888888877421 011455553 37788888888888775
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.06 E-value=7.1e-10 Score=95.08 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=60.6
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L 155 (200)
.++++|++ ++|.+.+ +|. +.++++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .++.+++|
T Consensus 131 ~~L~~L~L--~~n~l~~-lp~---~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGV--SNNQLEK-LPE---LQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFL 197 (454)
T ss_dssp TTCCEEEC--CSSCCSS-CCC---CTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred CCCCEEEC--cCCCCCC-Ccc---cCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCC
Confidence 35666666 6666654 443 6666667777776666664 4432 2356666666666653 44 35555656
Q ss_pred CEEeccCCcCCCCC----------------CchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 156 THLDLSFCVLTIEH----------------RTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 156 ~~L~Ls~N~l~~~~----------------~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
++|++++|++++.. ..+| .++.+++|++|++++|++++ +|
T Consensus 198 ~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~ 253 (454)
T 1jl5_A 198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LP 253 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred CEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-cc
Confidence 55555555553210 1234 25666667777777776664 44
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=5.5e-10 Score=92.33 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=84.7
Q ss_pred EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCC-hhccCCCCCCEEeccCCcCCCCCcc-cccCCCCCCE
Q 037769 80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLS-PEFGRLKELTYLNLSASNFGGLVPY-EMSHSSKLTH 157 (200)
Q Consensus 80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~P~-~l~~l~~L~~ 157 (200)
+++. ++++++ .+|. .+ .+++++|+|++|.|+. +| ..|.++++|++|+|++|.+.+.+|. .|.++++++.
T Consensus 13 ~v~C--~~~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 13 VFLC--QESKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EEEE--ESTTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred EEEe--cCCCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 4677 888888 6777 55 4689999999999997 55 4689999999999999999877765 5788888775
Q ss_pred -EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769 158 -LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 158 -L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~ 195 (200)
+.+..|+++ ...|..|..+++|++|++++|.+.+.
T Consensus 84 ~l~~~~N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 84 IRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp EEEEEETTCC---EECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred hhcccCCccc---ccCchhhhhccccccccccccccccC
Confidence 566778884 23356789999999999999999863
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=5.6e-11 Score=98.70 Aligned_cols=116 Identities=23% Similarity=0.240 Sum_probs=83.7
Q ss_pred cEEEEEcccCCCCCeeccCCCccccCC-----CCCcEEEccCCCCCCCCCChh----ccCC-CCCCEEeccCCcCCCCCc
Q 037769 77 NVIGLDLYSSCSWLVGTIDDNSTLFHL-----SHLQSLNLAYSNFLGSQLSPE----FGRL-KELTYLNLSASNFGGLVP 146 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~----l~~l-~~L~~L~Ls~n~l~~~~P 146 (200)
++++|+| ++|.+.+..+. .+..+ ++|++|++++|.+++. .+.. +..+ ++|++|++++|.+++..+
T Consensus 52 ~L~~L~L--s~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNL--SGNSLGFKNSD--ELVQILAAIPANVTSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEEC--CSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEEC--cCCCCCHHHHH--HHHHHHhccCCCccEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 7889999 88888765554 45554 8899999999998865 4443 3444 789999999999886555
Q ss_pred ccc----cC-CCCCCEEeccCCcCCCC-CCchhhhhcCCC-CCCEEecccccCCcCCC
Q 037769 147 YEM----SH-SSKLTHLDLSFCVLTIE-HRTFDLLASNLT-KLSLLYLGATNMSLIKP 197 (200)
Q Consensus 147 ~~l----~~-l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~-~L~~L~Ls~N~l~g~iP 197 (200)
..+ .. .++|++|+|++|.+++. ...++..+..++ +|++|+|++|++++..+
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 443 33 36899999999988521 013456666766 89999999999876543
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.01 E-value=7.7e-11 Score=97.87 Aligned_cols=114 Identities=25% Similarity=0.252 Sum_probs=88.3
Q ss_pred CcEEEEEcccCCCCCeeccC----CCccccCCC-CCcEEEccCCCCCCCCCChhccCC-----CCCCEEeccCCcCCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTID----DNSTLFHLS-HLQSLNLAYSNFLGSQLSPEFGRL-----KELTYLNLSASNFGGLV 145 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p----~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~ 145 (200)
.+++.|++ ++|.+.+..+ . .+..++ +|++|++++|.++.. .+..+..+ ++|++|+|++|.+++..
T Consensus 22 ~~L~~L~L--s~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDL--SLNNLYSISTVELIQ--AFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TTCCEEEC--TTSCGGGSCHHHHHH--HHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCceEEEc--cCCCCChHHHHHHHH--HHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 46999999 9999886554 5 677888 899999999999876 56666664 99999999999998766
Q ss_pred cccc----cCC-CCCCEEeccCCcCCCCCC-chhhhhcCC-CCCCEEecccccCCc
Q 037769 146 PYEM----SHS-SKLTHLDLSFCVLTIEHR-TFDLLASNL-TKLSLLYLGATNMSL 194 (200)
Q Consensus 146 P~~l----~~l-~~L~~L~Ls~N~l~~~~~-~lp~~l~~l-~~L~~L~Ls~N~l~g 194 (200)
+..+ ..+ ++|++|+|++|.+++... .+...+..+ ++|++|+|++|.+.+
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 6643 444 899999999999953110 122334553 699999999999985
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.84 E-value=1.9e-10 Score=97.70 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=51.6
Q ss_pred CCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCCCcccccC-----CCCCCEEeccCCcCCCC-CCchhhh
Q 037769 105 HLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGLVPYEMSH-----SSKLTHLDLSFCVLTIE-HRTFDLL 175 (200)
Q Consensus 105 ~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~-----l~~L~~L~Ls~N~l~~~-~~~lp~~ 175 (200)
+|++|++++|.++... ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++. ...+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 4444455444444320 2333445567777777777665433332221 55777777777777310 0146667
Q ss_pred hcCCCCCCEEecccccCCc
Q 037769 176 ASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 176 l~~l~~L~~L~Ls~N~l~g 194 (200)
+..+++|++|++++|++++
T Consensus 394 l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCCCCCEEECCSSSCCH
T ss_pred HHhCCCccEEECCCCCCCH
Confidence 7777888888888887764
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.81 E-value=1.9e-10 Score=92.26 Aligned_cols=68 Identities=26% Similarity=0.223 Sum_probs=37.5
Q ss_pred CCCCCCEEeccCCcCCC--CCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769 127 RLKELTYLNLSASNFGG--LVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197 (200)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~--~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP 197 (200)
.+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+ ..+..+ +|++|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccC-CcceEEccCCcCccccC
Confidence 35666666666666665 3344455666666666666666421 111 112223 66666666666665554
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.77 E-value=2.3e-10 Score=97.19 Aligned_cols=110 Identities=15% Similarity=0.036 Sum_probs=54.9
Q ss_pred cEEEEEcccCCCCCeec----cCCCccccCCCCCcEEEccCCCCCCCCCChhcc-----CCCCCCEEeccCCcCCCC---
Q 037769 77 NVIGLDLYSSCSWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFG-----RLKELTYLNLSASNFGGL--- 144 (200)
Q Consensus 77 ~l~~L~L~~~~n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~--- 144 (200)
+++.|++ ++|.+... ++. .+..+++|++|++++|.+... .+..+. ..++|+.|++++|.+++.
T Consensus 257 ~L~~L~L--~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 257 RLRTLWI--WECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp CCCEEEC--TTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CceEEEC--cCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence 4555555 55554432 333 344455555555555555432 111111 124566666666665543
Q ss_pred -CcccccCCCCCCEEeccCCcCCCCCCchhh----hhcC-CCCCCEEecccccCCc
Q 037769 145 -VPYEMSHSSKLTHLDLSFCVLTIEHRTFDL----LASN-LTKLSLLYLGATNMSL 194 (200)
Q Consensus 145 -~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~----~l~~-l~~L~~L~Ls~N~l~g 194 (200)
++..+..+++|++|++++|.++ ...+. .+.. .++|++|++++|.+++
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLE---DAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCH---HHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHHHhhCCCccEEEccCCccc---cccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 3444555566666666666663 11122 2221 5567777777776663
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.76 E-value=9.7e-10 Score=92.03 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CCchhh
Q 037769 103 LSHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HRTFDL 174 (200)
Q Consensus 103 l~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~ 174 (200)
.+.|++|+|++|.++... ++..+...++|++|+|++|.++.. ++..+...++|++|+|++|.++.. ...+..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 355666666666654310 223335566677777777666531 234455556677777777766310 012334
Q ss_pred hhcCCCCCCEEecccccCC
Q 037769 175 LASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 175 ~l~~l~~L~~L~Ls~N~l~ 193 (200)
.+...++|++|+|++|.|+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 4555667777777777665
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=2.6e-09 Score=89.44 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=84.7
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc-----cCCCCCCEEeccCCcCCC----CCc
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF-----GRLKELTYLNLSASNFGG----LVP 146 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l-----~~l~~L~~L~Ls~n~l~~----~~P 146 (200)
..++.|+| ++|.+....... ....+++|+.|+|++|.++.. -...+ ...+.|+.|+|++|.++. .++
T Consensus 101 ~~L~~L~L--s~n~l~~~~~~~-l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNL--ASCQLDPAGLRT-LLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEEC--TTCCCCHHHHHH-THHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEe--cCCCCCHHHHHH-HHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 57999999 999986433220 233467899999999998753 22233 346889999999999864 244
Q ss_pred ccccCCCCCCEEeccCCcCCCC-CCchhhhhcCCCCCCEEecccccCCc
Q 037769 147 YEMSHSSKLTHLDLSFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~g 194 (200)
..+..+++|++|+|++|.+++. ...++..+...++|+.|+|++|.|+.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4567789999999999999421 01345677888899999999999874
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.59 E-value=4.3e-09 Score=92.09 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=63.2
Q ss_pred ccCCCCCcEEEccCCC--CCCCCCChhcc-CCCCCCEEeccCCcCCC-CCcccccCCCCCCEEeccCCcCCCCCCchhhh
Q 037769 100 LFHLSHLQSLNLAYSN--FLGSQLSPEFG-RLKELTYLNLSASNFGG-LVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLL 175 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~--l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~ 175 (200)
+.++++|+.|+++.+. +++. .+..+. .+++|++|++++|.+++ .++..+..+++|+.|+|++|.++ ...++..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~ 508 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDL-GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS--ERAIAAA 508 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHH-HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB--HHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHH-HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc--HHHHHHH
Confidence 4446666666665432 3332 222232 37788888888888875 34555678889999999999884 2345666
Q ss_pred hcCCCCCCEEecccccCCcC
Q 037769 176 ASNLTKLSLLYLGATNMSLI 195 (200)
Q Consensus 176 l~~l~~L~~L~Ls~N~l~g~ 195 (200)
+..+++|++|++++|++++.
T Consensus 509 ~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTT
T ss_pred HHhcCccCeeECcCCcCCHH
Confidence 67889999999999988754
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=5e-08 Score=78.09 Aligned_cols=81 Identities=27% Similarity=0.262 Sum_probs=63.9
Q ss_pred cCCCCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCCcccccCCC--CCCEEeccCCcCCCCCCchh----
Q 037769 101 FHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS--KLTHLDLSFCVLTIEHRTFD---- 173 (200)
Q Consensus 101 ~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~--~L~~L~Ls~N~l~~~~~~lp---- 173 (200)
.++++|+.|+|++|.+++.. +|..+..+++|+.|+|++|.+++. ..+..+. +|+.|+|++|.+++ .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~---~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD---TFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG---GCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc---ccCcchh
Confidence 35789999999999999831 456677899999999999999964 3344444 99999999999953 232
Q ss_pred ---hhhcCCCCCCEEe
Q 037769 174 ---LLASNLTKLSLLY 186 (200)
Q Consensus 174 ---~~l~~l~~L~~L~ 186 (200)
..+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 3578899999887
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=2.8e-08 Score=75.01 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=86.2
Q ss_pred CcEEEEEcccCCC-CCeec----cCCCccccCCCCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCC---
Q 037769 76 GNVIGLDLYSSCS-WLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL--- 144 (200)
Q Consensus 76 ~~l~~L~L~~~~n-~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~--- 144 (200)
..+++|+| ++| .+... +.. .+...+.|++|+|++|.+.... +...+...+.|++|+|++|.+...
T Consensus 36 ~~L~~L~L--~~n~~i~~~g~~~l~~--~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 36 PDLEEVNL--NNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCCEEEC--TTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCEEEe--cCCCCCCHHHHHHHHH--HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 67999999 999 87632 334 5667789999999999986421 233455668899999999999853
Q ss_pred -CcccccCCCCCCEEec--cCCcCCCC-CCchhhhhcCCCCCCEEecccccCC
Q 037769 145 -VPYEMSHSSKLTHLDL--SFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 145 -~P~~l~~l~~L~~L~L--s~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
+...+...+.|++|+| ++|.++.. ...+...+...++|++|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556777889999999 88999421 0124556777799999999999874
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=7.5e-07 Score=72.70 Aligned_cols=101 Identities=20% Similarity=0.104 Sum_probs=74.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCC-EEeccCCcCCCCCcccccCCCC
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELT-YLNLSASNFGGLVPYEMSHSSK 154 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~P~~l~~l~~ 154 (200)
.+++.|+| ++|.++..-.. .|.++++|+.+++..| ++.. -+..|.++++|+ .++++. .++..-+..|.++++
T Consensus 226 ~~L~~l~L--~~n~i~~I~~~--aF~~~~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 226 PNLVSLDI--SKTNATTIPDF--TFAQKKYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp TTCCEEEC--TTBCCCEECTT--TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred CCCeEEEC--CCCCcceecHh--hhhCCCCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 46888888 88887733334 6888888888888887 6554 455678888888 888887 666344467888888
Q ss_pred CCEEeccCCcCCCCCCchh-hhhcCCCCCCEEec
Q 037769 155 LTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYL 187 (200)
Q Consensus 155 L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~L 187 (200)
|+.++++.|+++ .++ ..|.++++|+.++.
T Consensus 299 L~~l~l~~n~i~----~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGDKIT----TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSSCCC----EECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCCCccC----ccchhhhcCCcchhhhcc
Confidence 888888888883 333 46888888888764
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.37 E-value=2.4e-07 Score=80.92 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=32.1
Q ss_pred CcEEEEEcccCCCCCeec----cCCCccccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCC
Q 037769 76 GNVIGLDLYSSCSWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFG 142 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~ 142 (200)
.++++|+| ++|.+.+. ++. .+..+++|++|++++|.+++. .++..+..+++|+.|++++|.+.
T Consensus 164 ~~L~~L~L--~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 164 RKIKTLLM--EESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp TTCSEEEC--TTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCCCEEEC--ccccccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 45666666 66665433 222 334455666666666655421 02223344555666666555543
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.27 E-value=7.5e-08 Score=84.11 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=68.2
Q ss_pred CcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCC-CCCCCCCChhccCCCCCCEEeccCCcCCCCCcccc----
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYS-NFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM---- 149 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l---- 149 (200)
.+++.|++ +++.+.+.... .+. .+++|++|++++| .++...++..+..+++|++|++++|.+++..+..+
T Consensus 105 ~~L~~L~L--~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRL--KRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TTCCEEEE--ESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCeEEe--eCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 46788888 88777655544 444 5778888888877 44322123334467788888888887765443333
Q ss_pred cCCCCCCEEeccCCc--CCCCCCchhhhhcCCCCCCEEecccc
Q 037769 150 SHSSKLTHLDLSFCV--LTIEHRTFDLLASNLTKLSLLYLGAT 190 (200)
Q Consensus 150 ~~l~~L~~L~Ls~N~--l~~~~~~lp~~l~~l~~L~~L~Ls~N 190 (200)
..+++|+.|++++|. ++ ...++..+.++++|++|++++|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~--~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVS--FSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCC--HHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCC--HHHHHHHHHhCCCCcEEecCCC
Confidence 355678888887775 31 1123333455677777777776
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.23 E-value=5.2e-08 Score=85.12 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=51.2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCChhccC-CCCCCEEeccCCcCCCCCcccc-cCCCCCCEEeccCCcCCCCCCchhhhhc
Q 037769 100 LFHLSHLQSLNLAYSNFLGSQLSPEFGR-LKELTYLNLSASNFGGLVPYEM-SHSSKLTHLDLSFCVLTIEHRTFDLLAS 177 (200)
Q Consensus 100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~P~~l-~~l~~L~~L~Ls~N~l~~~~~~lp~~l~ 177 (200)
+..+++|+.|++++ .++.. .+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++ ..+...+.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~-~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~--~~~~~~~~ 503 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDK-VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD--KALLANAS 503 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHH-HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH--HHHHHTGG
T ss_pred HhhCCCccEEeecC-cccHH-HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH--HHHHHHHH
Confidence 34455666666654 44332 2233333 6667777777777654433333 456777777777777731 12233345
Q ss_pred CCCCCCEEecccccCC
Q 037769 178 NLTKLSLLYLGATNMS 193 (200)
Q Consensus 178 ~l~~L~~L~Ls~N~l~ 193 (200)
.+++|++|++++|+++
T Consensus 504 ~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 504 KLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGSSEEEEESSCCB
T ss_pred hCCCCCEEeeeCCCCC
Confidence 5677777777777663
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=4.1e-07 Score=68.55 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=72.7
Q ss_pred cccCCCCCcEEEccCC-CCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-C
Q 037769 99 TLFHLSHLQSLNLAYS-NFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-H 169 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n-~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~ 169 (200)
.+...+.|++|+|++| .+.... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.++.. .
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 5677899999999999 886421 234566788999999999999742 334455668899999999999520 0
Q ss_pred CchhhhhcCCCCCCEEec--ccccCCc
Q 037769 170 RTFDLLASNLTKLSLLYL--GATNMSL 194 (200)
Q Consensus 170 ~~lp~~l~~l~~L~~L~L--s~N~l~g 194 (200)
..+...+...++|++|+| ++|.|..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 124567788899999999 8898863
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=9.3e-06 Score=66.14 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=72.4
Q ss_pred CCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC-EEeccCCcCCCCCCch-hhhhcCCC
Q 037769 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT-HLDLSFCVLTIEHRTF-DLLASNLT 180 (200)
Q Consensus 103 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~-~L~Ls~N~l~~~~~~l-p~~l~~l~ 180 (200)
+++|+.+++.+|.++.. -+..|..+++|+.++++.| +...-+..|.++.+|+ .+++.. .++ .+ +..|.+++
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~----~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT----AIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC----EECTTTTTTCT
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce----EEchhhhhCCc
Confidence 78999999999999874 4567899999999999998 6644445799999999 999988 562 34 46799999
Q ss_pred CCCEEecccccCCcCCCC
Q 037769 181 KLSLLYLGATNMSLIKPF 198 (200)
Q Consensus 181 ~L~~L~Ls~N~l~g~iP~ 198 (200)
+|+.++++.|.+.. |+.
T Consensus 298 ~L~~l~l~~n~i~~-I~~ 314 (329)
T 3sb4_A 298 NLRYVLATGDKITT-LGD 314 (329)
T ss_dssp TEEEEEECSSCCCE-ECT
T ss_pred cCCEEEeCCCccCc-cch
Confidence 99999999998873 443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=1.4e-06 Score=72.65 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=41.0
Q ss_pred CCCCCCEEeccCCcCCCCCcccc---cCCCCCCEEeccCCcCCCC-CCchhhhhcCCCCCCEEecccccCC
Q 037769 127 RLKELTYLNLSASNFGGLVPYEM---SHSSKLTHLDLSFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~P~~l---~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~ 193 (200)
.+++|++|+|.+|.+.+..+..+ ..+++|++|+|+.|.+++. ...++..+.++++|+.|+|+.|.|+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 36777777777777654332222 2466788888888777420 0123334456678888888888765
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=7.8e-06 Score=61.25 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=51.5
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC-CCCCCCChhccCC----CCCCEEeccCCc-CCCCCcccc
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN-FLGSQLSPEFGRL----KELTYLNLSASN-FGGLVPYEM 149 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~P~~l 149 (200)
-+++.||+ +++.++..--. .+.++++|+.|+|++|. ++.. --..+..+ ++|+.|+|++|. ++..--..+
T Consensus 61 ~~L~~LDL--s~~~Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDA--TDSCIMSIGFD--HMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEE--ESCCCCGGGGG--GGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeC--cCCCccHHHHH--HhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 36788888 77776643333 46677788888888775 4432 12234443 357777777764 553322345
Q ss_pred cCCCCCCEEeccCCc
Q 037769 150 SHSSKLTHLDLSFCV 164 (200)
Q Consensus 150 ~~l~~L~~L~Ls~N~ 164 (200)
..+++|++|+|+++.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 667777777777764
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=7.1e-06 Score=61.50 Aligned_cols=84 Identities=12% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCc-CCCCCcccccCC----CCCCEEeccCCc-CCCCCCchhhhhc
Q 037769 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN-FGGLVPYEMSHS----SKLTHLDLSFCV-LTIEHRTFDLLAS 177 (200)
Q Consensus 104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~P~~l~~l----~~L~~L~Ls~N~-l~~~~~~lp~~l~ 177 (200)
-.|+.|+++++.++.. --..+..+++|+.|+|++|. ++..--..+..+ ++|++|+|+++. +|. ..+ ..+.
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl-~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGI-IALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHH-HHGG
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHH-HHHh
Confidence 4699999999998765 33557899999999999995 664322345554 379999999985 752 223 3577
Q ss_pred CCCCCCEEeccccc
Q 037769 178 NLTKLSLLYLGATN 191 (200)
Q Consensus 178 ~l~~L~~L~Ls~N~ 191 (200)
++++|++|+++++.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 89999999999985
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.38 E-value=9.2e-05 Score=61.54 Aligned_cols=108 Identities=15% Similarity=0.088 Sum_probs=64.0
Q ss_pred CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhcc--CCCCCCEEeccC--CcCCCC-----Cc
Q 037769 76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFG--RLKELTYLNLSA--SNFGGL-----VP 146 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~--~l~~L~~L~Ls~--n~l~~~-----~P 146 (200)
++++.|+| +++.-. .+++ + .+++|+.|++..+.+... ....+. .+++|+.|+|+. |...+. +.
T Consensus 172 P~L~~L~L--~g~~~l-~l~~---~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 172 PLLNNLKI--KGTNNL-SIGK---K-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TTCCEEEE--ECCBTC-BCCS---C-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred CCCcEEEE--eCCCCc-eecc---c-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 56777777 665211 2222 2 267788888877766532 222233 678888888753 221111 11
Q ss_pred ccc--cCCCCCCEEeccCCcCCCCCCchhhhh---cCCCCCCEEecccccCCc
Q 037769 147 YEM--SHSSKLTHLDLSFCVLTIEHRTFDLLA---SNLTKLSLLYLGATNMSL 194 (200)
Q Consensus 147 ~~l--~~l~~L~~L~Ls~N~l~~~~~~lp~~l---~~l~~L~~L~Ls~N~l~g 194 (200)
..+ ..+++|++|+|.+|.++ ...+..+ ..+++|++|+|+.|.+.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~---~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQ---NVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTH---HHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHhcCCCCCcCEEeCCCCCCc---hHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 122 24788999999888884 2222222 357889999999988865
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.23 E-value=0.00084 Score=56.39 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=57.0
Q ss_pred cccCCCCCcEEEccCCCCC-----CCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-
Q 037769 99 TLFHLSHLQSLNLAYSNFL-----GSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF- 172 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~-----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l- 172 (200)
.|.++++|+.+++.++.+. .. -+..|..+++|+.++|.. .+...-...|.++.+|+.+.|..| ++ .+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~----~I~ 338 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT----QIN 338 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC----EEC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc----EEc
Confidence 5667777777777776654 11 234567777788887773 355233346777788888888554 42 22
Q ss_pred hhhhcCCCCCCEEecccccCC
Q 037769 173 DLLASNLTKLSLLYLGATNMS 193 (200)
Q Consensus 173 p~~l~~l~~L~~L~Ls~N~l~ 193 (200)
...|.++ +|+.+++.+|.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCC
T ss_pred HHhCCCC-CCCEEEEcCCCCc
Confidence 3457777 8888888888655
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.00092 Score=47.25 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=30.1
Q ss_pred EEEcccCCCCCe-eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCC
Q 037769 80 GLDLYSSCSWLV-GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFG 142 (200)
Q Consensus 80 ~L~L~~~~n~l~-~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~ 142 (200)
.++. ++++++ ..+|. .+ -++|+.|+|++|.|+.. -+..|..+++|+.|+|.+|.+.
T Consensus 12 ~v~C--s~~~L~~~~vP~--~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDC--GRRGLTWASLPT--AF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEEC--CSSCCCTTTSCS--CC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEe--CCCCCccccCCC--CC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCee
Confidence 4455 555554 23343 21 23466666666666653 3344555666666666666553
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.89 E-value=0.002 Score=54.08 Aligned_cols=107 Identities=9% Similarity=0.081 Sum_probs=76.6
Q ss_pred CcEEEEEcccCCCCCe----eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccC
Q 037769 76 GNVIGLDLYSSCSWLV----GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSH 151 (200)
Q Consensus 76 ~~l~~L~L~~~~n~l~----~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~ 151 (200)
.+++.+++ .++.+. ..++.. .|.++++|+.+++.. .++.. -...|.++++|+.+.|..+ ++..-...|.+
T Consensus 271 ~~L~~l~l--~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l~~-~i~~I-~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 271 PELAEVTT--YGSTFNDDPEAMIHPY-CLEGCPKLARFEIPE-SIRIL-GQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp TTCCEEEE--ESSCCCCCTTCEECTT-TTTTCTTCCEECCCT-TCCEE-CTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred CCCCEEEe--CCccccCCcccEECHH-HhhCCccCCeEEeCC-ceEEE-hhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 46777887 666543 123332 788999999999984 46654 4567889999999999765 55344457888
Q ss_pred CCCCCEEeccCCcCCCCCCchhhhhcCCC-CCCEEecccccC
Q 037769 152 SSKLTHLDLSFCVLTIEHRTFDLLASNLT-KLSLLYLGATNM 192 (200)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~-~L~~L~Ls~N~l 192 (200)
+ +|+.+++.+|.+. ...+..|..++ +++.|++..+.+
T Consensus 345 ~-~L~~l~l~~n~~~---~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPP---QVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp S-CCCEEEECCSSCC---BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred C-CCCEEEEcCCCCc---ccccccccCCCCCccEEEeCHHHH
Confidence 8 9999999999873 22234566664 788998887653
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.88 E-value=0.0023 Score=45.14 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=43.7
Q ss_pred cEEEccCCCCC--CCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769 107 QSLNLAYSNFL--GSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL 165 (200)
Q Consensus 107 ~~L~L~~n~l~--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l 165 (200)
..++.+++.++ . +|..+ ..+|+.|+|++|.|+..-+..|..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~--vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS--LPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTT--SCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCcccc--CCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888887 4 67543 35699999999999954445678899999999999988
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00073 Score=51.37 Aligned_cols=113 Identities=11% Similarity=0.085 Sum_probs=77.9
Q ss_pred CcEEEEEcccCCC-CCee----ccCCCccccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCCCC---
Q 037769 76 GNVIGLDLYSSCS-WLVG----TIDDNSTLFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFGGL--- 144 (200)
Q Consensus 76 ~~l~~L~L~~~~n-~l~~----~~p~~~~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~--- 144 (200)
..++.|+| +++ .+.. .+.. .+..-+.|+.|+|++|.+... .+-..+..=+.|+.|+|+.|.|...
T Consensus 41 ~~L~~L~L--~~nn~igd~ga~~la~--aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 41 TDLKEVNI--NNMKRVSKERIRSLIE--AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp SSCCEEEC--TTCCSSCHHHHHHHHH--HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCccEEEC--CCCCCCCHHHHHHHHH--HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 57999999 885 6652 2334 566678899999999998732 0223344557899999999999743
Q ss_pred -CcccccCCCCCCEEeccCC---cCCCC-CCchhhhhcCCCCCCEEecccccC
Q 037769 145 -VPYEMSHSSKLTHLDLSFC---VLTIE-HRTFDLLASNLTKLSLLYLGATNM 192 (200)
Q Consensus 145 -~P~~l~~l~~L~~L~Ls~N---~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l 192 (200)
+-..+..-+.|+.|+|++| .+... ...+...+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3334556678999999865 44210 012455677778999999987754
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.66 E-value=0.00064 Score=51.71 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=65.7
Q ss_pred cccCCCCCcEEEccCC-CCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-C
Q 037769 99 TLFHLSHLQSLNLAYS-NFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-H 169 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n-~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~ 169 (200)
.+.+-+.|+.|+|++| .+.... +-..+..-+.|+.|+|++|.+... +...+..-+.|++|+|+.|.++.. .
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455688999999986 764210 234466678999999999999742 333455568899999999999521 1
Q ss_pred CchhhhhcCCCCCCEEecccc
Q 037769 170 RTFDLLASNLTKLSLLYLGAT 190 (200)
Q Consensus 170 ~~lp~~l~~l~~L~~L~Ls~N 190 (200)
..+-..+..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 124456777788999999865
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.83 E-value=0.028 Score=46.46 Aligned_cols=85 Identities=12% Similarity=0.188 Sum_probs=54.4
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS 177 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~ 177 (200)
.+.+++.|+.+.+.. .++.. -...|.++.+|+.++|..+ ++..-...|.++.+|+.+.+..+ ++ .+ ...|.
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~----~I~~~aF~ 354 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITEL-PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT----KIPESAFS 354 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC----BCCGGGGT
T ss_pred ccccccccccccCCC-ccccc-CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC----EEhHhHhh
Confidence 566778888888753 34332 2345677788888888754 44222346777888888887654 42 22 34577
Q ss_pred CCCCCCEEeccccc
Q 037769 178 NLTKLSLLYLGATN 191 (200)
Q Consensus 178 ~l~~L~~L~Ls~N~ 191 (200)
++++|+.+++.++.
T Consensus 355 ~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 NCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEESSCH
T ss_pred CCCCCCEEEECCce
Confidence 78888888877654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.74 E-value=0.056 Score=44.67 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=48.2
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcC
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASN 178 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~ 178 (200)
.|.++.+|+.+.+..+ ++.. -...|.++++|+.+.+..+ ++..-...|.++.+|+.+++.++... -..+..
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~------~~~~~~ 376 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ------WNAIST 376 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH------HHTCBC
T ss_pred eecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee------hhhhhc
Confidence 5667778888887654 4432 2456777888888888654 44222346778888888888776541 134566
Q ss_pred CCCCCEEecccccC
Q 037769 179 LTKLSLLYLGATNM 192 (200)
Q Consensus 179 l~~L~~L~Ls~N~l 192 (200)
...|+.+.+..|.+
T Consensus 377 ~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 377 DSGLQNLPVAPGSI 390 (394)
T ss_dssp CCCC----------
T ss_pred cCCCCEEEeCCCCE
Confidence 67777777766654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.18 E-value=0.053 Score=44.40 Aligned_cols=85 Identities=20% Similarity=0.146 Sum_probs=52.4
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchh-hhhc
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFD-LLAS 177 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp-~~l~ 177 (200)
.+.++..|+.+.+..+ +... -...+..+++|+.+.+..+.++..-...|.++.+|+.+.|..+ ++ .+. ..|.
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~----~I~~~aF~ 330 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK----TIQVYAFK 330 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC----EECTTTTT
T ss_pred ccceeehhcccccccc-ceec-cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc----EEHHHHhh
Confidence 4455666666666443 3321 2335667788888888877776333346778888888888654 32 232 3577
Q ss_pred CCCCCCEEecccc
Q 037769 178 NLTKLSLLYLGAT 190 (200)
Q Consensus 178 ~l~~L~~L~Ls~N 190 (200)
++++|+.+.+..+
T Consensus 331 ~C~~L~~i~ip~~ 343 (379)
T 4h09_A 331 NCKALSTISYPKS 343 (379)
T ss_dssp TCTTCCCCCCCTT
T ss_pred CCCCCCEEEECCc
Confidence 7777777776543
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.04 E-value=0.039 Score=45.63 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=60.5
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS 177 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~ 177 (200)
.+..+..|+.+.+..+ ++.. -...|..+++|+.++|..+ ++..-...|.++.+|+.+++..+ ++ .+ ...|.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~----~I~~~aF~ 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR----KIGANAFQ 363 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC----EECTTTBT
T ss_pred cccccccccccccccc-ccee-chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc----EehHHHhh
Confidence 5677888999888764 4432 3456788899999999754 55223357888999999998766 42 23 34688
Q ss_pred CCCCCCEEecccc
Q 037769 178 NLTKLSLLYLGAT 190 (200)
Q Consensus 178 ~l~~L~~L~Ls~N 190 (200)
++.+|+.+++..+
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 8999999988765
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.90 E-value=0.048 Score=45.06 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=45.1
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS 177 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~ 177 (200)
.+..+..++.+.+..+.+. ...+..+.+|+.+.+..+ +...-...|.++.+|+.+++..+ ++ .+ ...|.
T Consensus 271 ~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~----~I~~~aF~ 340 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE----EIGKRSFR 340 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC----EECTTTTT
T ss_pred ccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc----EEhHHhcc
Confidence 3555666666665554332 224556667777766544 33222235666677777776543 31 22 23466
Q ss_pred CCCCCCEEecccc
Q 037769 178 NLTKLSLLYLGAT 190 (200)
Q Consensus 178 ~l~~L~~L~Ls~N 190 (200)
++++|+.+++..|
T Consensus 341 ~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 341 GCTSLSNINFPLS 353 (394)
T ss_dssp TCTTCCEECCCTT
T ss_pred CCCCCCEEEECcc
Confidence 6777777766554
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.25 E-value=0.44 Score=38.76 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=57.0
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS 177 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~ 177 (200)
.+.++..|+.+.+..+ ++.. -...+..+.+|+.+.+..+ +...-...|.++.+|+.+.+..+.++ .+ ...|.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~----~I~~~aF~ 307 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE----TLEPRVFM 307 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC----EECTTTTT
T ss_pred cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccc----eehhhhhc
Confidence 3555667777776554 3322 2345667788888888654 43222346788899999999888773 33 34688
Q ss_pred CCCCCCEEecccc
Q 037769 178 NLTKLSLLYLGAT 190 (200)
Q Consensus 178 ~l~~L~~L~Ls~N 190 (200)
++.+|+.+.|..+
T Consensus 308 ~c~~L~~i~lp~~ 320 (379)
T 4h09_A 308 DCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEECCTT
T ss_pred CCCCCCEEEcCcc
Confidence 8999999998654
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=35.72 E-value=8.9 Score=17.51 Aligned_cols=10 Identities=40% Similarity=1.215 Sum_probs=7.6
Q ss_pred CCCccccceE
Q 037769 61 TDCCSWDGVT 70 (200)
Q Consensus 61 ~~~c~w~gv~ 70 (200)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3569999975
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.69 E-value=94 Score=19.97 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=18.9
Q ss_pred cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccC
Q 037769 99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSA 138 (200)
Q Consensus 99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~ 138 (200)
.|.+++.|+.+.+-.+ ++.. -...|..+.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~I-g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLL-YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCC-CTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheE-cHHHHhccCCccEEEEcC
Confidence 4555666666655443 2221 233455555665555543
Done!