Query 037770
Match_columns 65
No_of_seqs 108 out of 1108
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 06:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.7 3.6E-16 1.2E-20 81.8 6.1 55 9-63 60-114 (216)
2 1azs_C GS-alpha; complex (lyas 99.6 1.4E-15 4.8E-20 85.5 8.3 60 4-63 210-279 (402)
3 4fid_A G protein alpha subunit 99.6 4.4E-16 1.5E-20 86.0 6.1 62 2-63 152-223 (340)
4 3ohm_A Guanine nucleotide-bind 99.6 1.3E-15 4.5E-20 83.8 6.4 62 2-63 158-229 (327)
5 1cip_A Protein (guanine nucleo 99.6 2.3E-15 8E-20 83.4 7.2 61 3-63 185-255 (353)
6 4bas_A ADP-ribosylation factor 99.6 3.2E-14 1.1E-18 72.4 8.8 62 2-63 54-115 (199)
7 1r8s_A ADP-ribosylation factor 99.6 5.4E-14 1.8E-18 69.7 8.9 62 2-63 35-96 (164)
8 1zcb_A G alpha I/13; GTP-bindi 99.6 9.2E-15 3.1E-19 81.3 6.7 61 3-63 193-263 (362)
9 1fzq_A ADP-ribosylation factor 99.6 8.3E-14 2.8E-18 70.5 8.9 61 3-63 52-112 (181)
10 2xtz_A Guanine nucleotide-bind 99.5 1.2E-14 4.1E-19 80.6 5.7 55 9-63 181-245 (354)
11 1zj6_A ADP-ribosylation factor 99.5 1.4E-13 4.7E-18 69.8 8.6 62 2-63 51-112 (187)
12 1f6b_A SAR1; gtpases, N-termin 99.5 1.5E-13 5E-18 70.6 8.5 61 3-63 61-121 (198)
13 2b6h_A ADP-ribosylation factor 99.5 1.6E-13 5.5E-18 70.1 8.4 60 3-62 65-124 (192)
14 2h17_A ADP-ribosylation factor 99.5 2.1E-13 7.3E-18 68.9 8.4 62 2-63 56-117 (181)
15 2h57_A ADP-ribosylation factor 99.5 3.2E-13 1.1E-17 68.6 8.4 61 3-63 59-119 (190)
16 1m2o_B GTP-binding protein SAR 99.5 5.5E-13 1.9E-17 68.0 9.2 60 3-62 59-118 (190)
17 1ksh_A ARF-like protein 2; sma 99.5 2.2E-13 7.5E-18 68.8 7.6 61 3-63 54-114 (186)
18 1upt_A ARL1, ADP-ribosylation 99.5 3.7E-13 1.3E-17 67.0 8.3 61 3-63 43-103 (171)
19 2x77_A ADP-ribosylation factor 99.5 2.2E-13 7.7E-18 69.0 7.4 62 2-63 57-118 (189)
20 2hxs_A RAB-26, RAS-related pro 99.5 5E-13 1.7E-17 66.9 8.2 59 4-62 46-107 (178)
21 1zd9_A ADP-ribosylation factor 99.5 4.1E-13 1.4E-17 68.2 7.8 61 3-63 59-119 (188)
22 2hup_A RAS-related protein RAB 99.5 5.4E-13 1.8E-17 68.5 7.7 58 5-62 70-129 (201)
23 1moz_A ARL1, ADP-ribosylation 99.4 8.9E-13 3E-17 66.3 7.7 62 2-63 53-114 (183)
24 2fu5_C RAS-related protein RAB 99.4 6.7E-13 2.3E-17 66.9 7.2 58 5-62 49-108 (183)
25 3q3j_B RHO-related GTP-binding 99.4 7.2E-13 2.4E-17 68.7 6.5 57 6-62 70-127 (214)
26 3lvq_E ARF-GAP with SH3 domain 99.4 1.5E-12 5.2E-17 74.3 7.8 62 2-63 357-418 (497)
27 2ew1_A RAS-related protein RAB 99.4 2.9E-12 9.9E-17 66.0 8.0 52 11-62 75-126 (201)
28 3cpj_B GTP-binding protein YPT 99.4 2E-12 6.8E-17 67.2 7.3 58 5-62 54-113 (223)
29 3t5g_A GTP-binding protein RHE 99.4 8.3E-13 2.8E-17 66.4 5.7 53 11-63 54-106 (181)
30 3oes_A GTPase rhebl1; small GT 99.4 1.7E-12 5.9E-17 66.5 6.9 57 7-63 68-124 (201)
31 2bme_A RAB4A, RAS-related prot 99.4 3.4E-12 1.2E-16 64.3 7.8 51 11-61 59-109 (186)
32 1ek0_A Protein (GTP-binding pr 99.4 1.3E-12 4.3E-17 64.8 6.1 53 10-62 51-103 (170)
33 3tw8_B RAS-related protein RAB 99.4 3.2E-12 1.1E-16 64.0 7.5 59 4-62 49-109 (181)
34 3tkl_A RAS-related protein RAB 99.4 3.7E-12 1.3E-16 64.6 7.7 59 4-62 56-116 (196)
35 2yc2_C IFT27, small RAB-relate 99.4 1.7E-12 5.6E-17 66.4 6.3 53 10-62 72-124 (208)
36 1r2q_A RAS-related protein RAB 99.4 1.7E-12 6E-17 64.3 6.1 53 10-62 54-106 (170)
37 3r7w_B Gtpase2, GTP-binding pr 99.4 4.3E-13 1.5E-17 73.9 4.1 39 9-47 44-85 (331)
38 3q72_A GTP-binding protein RAD 99.4 1.4E-12 4.6E-17 64.7 5.5 55 9-63 47-101 (166)
39 3kkq_A RAS-related protein M-R 99.4 9.8E-13 3.4E-17 66.2 5.0 53 10-62 65-117 (183)
40 2fn4_A P23, RAS-related protei 99.4 1.4E-12 4.9E-17 65.2 5.6 52 11-62 57-108 (181)
41 1z06_A RAS-related protein RAB 99.4 3.8E-12 1.3E-16 64.5 7.1 53 11-63 69-122 (189)
42 1c1y_A RAS-related protein RAP 99.4 1.1E-12 3.7E-17 65.0 5.0 54 9-62 49-102 (167)
43 2efe_B Small GTP-binding prote 99.4 2.2E-12 7.7E-17 64.7 6.2 53 10-62 60-112 (181)
44 3o47_A ADP-ribosylation factor 99.4 3E-12 1E-16 70.3 7.1 61 3-63 201-261 (329)
45 2a5j_A RAS-related protein RAB 99.4 3.3E-12 1.1E-16 64.9 6.8 53 10-62 69-121 (191)
46 1m7b_A RND3/RHOE small GTP-bin 99.4 1.3E-12 4.6E-17 66.0 5.3 53 9-61 53-106 (184)
47 1u8z_A RAS-related protein RAL 99.4 1.9E-12 6.5E-17 64.0 5.7 53 10-62 51-103 (168)
48 2bcg_Y Protein YP2, GTP-bindin 99.4 7.6E-12 2.6E-16 64.1 8.0 53 10-62 56-108 (206)
49 2j0v_A RAC-like GTP-binding pr 99.4 1.2E-12 4.1E-17 67.4 4.9 53 9-61 55-108 (212)
50 2p5s_A RAS and EF-hand domain 99.4 1.2E-11 4E-16 63.3 8.6 52 10-61 76-127 (199)
51 2q3h_A RAS homolog gene family 99.4 2.5E-12 8.4E-17 65.7 5.9 53 10-62 67-120 (201)
52 2atx_A Small GTP binding prote 99.4 1.7E-12 5.8E-17 66.0 5.3 53 10-62 65-118 (194)
53 2il1_A RAB12; G-protein, GDP, 99.4 7E-12 2.4E-16 63.9 7.6 51 11-61 75-125 (192)
54 3t1o_A Gliding protein MGLA; G 99.4 1.4E-12 4.6E-17 66.1 4.9 52 9-60 72-129 (198)
55 3c5c_A RAS-like protein 12; GD 99.4 2.2E-12 7.6E-17 65.5 5.7 53 9-62 67-119 (187)
56 3cbq_A GTP-binding protein REM 99.4 1.4E-12 4.8E-17 66.8 5.0 54 9-62 70-124 (195)
57 2g6b_A RAS-related protein RAB 99.4 1.7E-12 5.8E-17 65.1 5.2 53 10-62 59-111 (180)
58 1z08_A RAS-related protein RAB 99.4 1.5E-12 5E-17 64.8 4.9 53 9-61 53-105 (170)
59 1zbd_A Rabphilin-3A; G protein 99.4 1.3E-11 4.3E-16 63.1 8.5 53 10-62 56-108 (203)
60 1gwn_A RHO-related GTP-binding 99.3 1.7E-12 5.8E-17 67.0 5.0 53 9-61 74-127 (205)
61 3reg_A RHO-like small GTPase; 99.3 2E-12 7E-17 65.8 5.2 52 9-60 69-121 (194)
62 1kao_A RAP2A; GTP-binding prot 99.3 3.6E-12 1.2E-16 63.0 6.0 53 10-62 50-102 (167)
63 2fg5_A RAB-22B, RAS-related pr 99.3 3.4E-12 1.2E-16 65.0 6.0 54 9-62 70-123 (192)
64 1x3s_A RAS-related protein RAB 99.3 8.9E-12 3E-16 63.1 7.5 53 10-62 63-115 (195)
65 1wms_A RAB-9, RAB9, RAS-relate 99.3 1.8E-11 6.1E-16 61.2 8.5 52 11-62 56-107 (177)
66 3bwd_D RAC-like GTP-binding pr 99.3 3.2E-12 1.1E-16 64.2 5.7 55 7-61 52-107 (182)
67 3cph_A RAS-related protein SEC 99.3 6.5E-12 2.2E-16 64.5 6.9 59 4-62 60-120 (213)
68 2y8e_A RAB-protein 6, GH09086P 99.3 1.3E-11 4.3E-16 61.7 7.8 52 11-62 63-114 (179)
69 3l0i_B RAS-related protein RAB 99.3 2.7E-12 9.1E-17 65.7 5.4 59 4-62 73-133 (199)
70 2a9k_A RAS-related protein RAL 99.3 4.1E-12 1.4E-16 63.9 6.0 52 11-62 66-117 (187)
71 2bov_A RAla, RAS-related prote 99.3 3.9E-12 1.3E-16 65.0 6.0 52 11-62 62-113 (206)
72 2gf9_A RAS-related protein RAB 99.3 1.5E-11 5E-16 62.4 8.0 53 10-62 70-122 (189)
73 1z0f_A RAB14, member RAS oncog 99.3 3.7E-12 1.3E-16 63.6 5.6 53 10-62 63-115 (179)
74 3clv_A RAB5 protein, putative; 99.3 1.5E-11 5.2E-16 62.3 7.8 52 11-62 93-144 (208)
75 4dsu_A GTPase KRAS, isoform 2B 99.3 4.4E-12 1.5E-16 63.9 5.8 53 10-62 51-103 (189)
76 2o52_A RAS-related protein RAB 99.3 3.5E-12 1.2E-16 65.4 5.4 52 11-62 74-125 (200)
77 1z0j_A RAB-22, RAS-related pro 99.3 2.7E-11 9.2E-16 60.1 8.5 52 11-62 55-106 (170)
78 1ky3_A GTP-binding protein YPT 99.3 6.5E-12 2.2E-16 62.9 6.2 53 10-62 57-109 (182)
79 2oil_A CATX-8, RAS-related pro 99.3 2.3E-11 8E-16 61.7 8.1 53 10-62 73-125 (193)
80 1mh1_A RAC1; GTP-binding, GTPa 99.3 3.9E-12 1.3E-16 64.0 5.0 53 9-61 51-104 (186)
81 3dz8_A RAS-related protein RAB 99.3 1.3E-12 4.3E-17 66.5 3.1 54 9-62 70-123 (191)
82 1g16_A RAS-related protein SEC 99.3 7.6E-12 2.6E-16 62.1 5.8 53 10-62 51-103 (170)
83 3ihw_A Centg3; RAS, centaurin, 99.3 5.5E-12 1.9E-16 64.0 5.3 49 10-63 66-114 (184)
84 3bc1_A RAS-related protein RAB 99.3 1.4E-11 4.9E-16 62.1 6.8 53 10-62 69-121 (195)
85 2erx_A GTP-binding protein DI- 99.3 6.3E-12 2.2E-16 62.4 5.4 53 10-62 50-102 (172)
86 3q85_A GTP-binding protein REM 99.3 3E-12 1E-16 63.6 4.0 53 10-62 50-103 (169)
87 3gj0_A GTP-binding nuclear pro 99.3 4E-12 1.4E-16 65.9 4.6 54 9-62 62-115 (221)
88 1z2a_A RAS-related protein RAB 99.3 3.6E-12 1.2E-16 63.2 4.3 53 10-62 53-105 (168)
89 4gzl_A RAS-related C3 botulinu 99.3 1E-11 3.5E-16 63.9 6.0 54 8-61 75-129 (204)
90 2f7s_A C25KG, RAS-related prot 99.3 4.1E-12 1.4E-16 65.6 4.5 53 10-62 83-135 (217)
91 1vg8_A RAS-related protein RAB 99.3 1.4E-11 4.9E-16 63.0 6.3 53 10-62 56-108 (207)
92 2j1l_A RHO-related GTP-binding 99.3 3.6E-12 1.2E-16 66.0 4.0 52 10-61 81-133 (214)
93 2ce2_X GTPase HRAS; signaling 99.3 1.3E-11 4.6E-16 60.8 5.8 53 10-62 50-102 (166)
94 2atv_A RERG, RAS-like estrogen 99.3 9.5E-12 3.3E-16 63.4 5.1 52 10-62 75-126 (196)
95 2gco_A H9, RHO-related GTP-bin 99.3 7.6E-12 2.6E-16 64.1 4.7 51 10-60 72-123 (201)
96 2fv8_A H6, RHO-related GTP-bin 99.3 1.3E-11 4.4E-16 63.5 5.5 52 10-61 72-124 (207)
97 2gf0_A GTP-binding protein DI- 99.3 9.2E-12 3.1E-16 63.3 4.8 52 10-61 55-106 (199)
98 2iwr_A Centaurin gamma 1; ANK 99.3 1.6E-11 5.6E-16 61.5 5.5 46 10-60 53-98 (178)
99 2nzj_A GTP-binding protein REM 99.3 1.9E-11 6.6E-16 60.9 5.7 53 10-62 51-105 (175)
100 3r7w_A Gtpase1, GTP-binding pr 99.2 4.7E-11 1.6E-15 65.0 7.4 50 9-58 50-104 (307)
101 3con_A GTPase NRAS; structural 99.2 2E-11 6.8E-16 61.8 5.2 52 11-62 69-120 (190)
102 3llu_A RAS-related GTP-binding 99.2 4.4E-11 1.5E-15 61.0 6.1 53 8-60 66-123 (196)
103 4djt_A GTP-binding nuclear pro 99.2 4.1E-11 1.4E-15 61.9 5.6 52 11-62 61-112 (218)
104 2wkq_A NPH1-1, RAS-related C3 99.2 5.3E-11 1.8E-15 64.5 5.0 52 10-61 202-254 (332)
105 2g3y_A GTP-binding protein GEM 99.2 5.2E-11 1.8E-15 62.0 4.6 53 10-62 86-139 (211)
106 2cjw_A GTP-binding protein GEM 99.2 6.3E-11 2.2E-15 60.5 4.9 52 10-61 55-107 (192)
107 2fh5_B SR-beta, signal recogni 99.2 2.2E-10 7.6E-15 59.0 6.8 52 10-61 53-106 (214)
108 2zej_A Dardarin, leucine-rich 99.1 2.2E-11 7.5E-16 61.7 2.4 54 9-62 54-108 (184)
109 3th5_A RAS-related C3 botulinu 98.7 6.7E-12 2.3E-16 64.3 0.0 54 7-60 74-128 (204)
110 2f9l_A RAB11B, member RAS onco 99.0 1.6E-09 5.4E-14 55.4 7.2 57 5-61 46-104 (199)
111 1nrj_B SR-beta, signal recogni 99.0 3.2E-10 1.1E-14 58.5 4.3 52 11-62 55-111 (218)
112 3c5h_A Glucocorticoid receptor 99.0 1.2E-10 4.1E-15 61.9 2.6 57 6-62 90-192 (255)
113 2ged_A SR-beta, signal recogni 99.0 3.3E-10 1.1E-14 57.4 4.1 53 10-62 90-147 (193)
114 2lkc_A Translation initiation 98.9 3.2E-09 1.1E-13 53.0 5.2 50 4-53 48-100 (178)
115 3l82_B F-box only protein 4; T 98.9 3.9E-10 1.3E-14 59.3 1.8 40 17-57 108-147 (227)
116 1oix_A RAS-related protein RAB 98.9 1.9E-08 6.5E-13 51.2 7.3 58 4-61 69-128 (191)
117 2wji_A Ferrous iron transport 98.8 2.5E-07 8.6E-12 45.9 9.3 54 4-60 43-104 (165)
118 1u0l_A Probable GTPase ENGC; p 98.8 8.2E-09 2.8E-13 56.1 4.0 48 12-61 64-112 (301)
119 3l2o_B F-box only protein 4; s 98.7 1.9E-09 6.5E-14 59.0 1.1 39 17-56 193-231 (312)
120 1jny_A EF-1-alpha, elongation 98.7 8.5E-09 2.9E-13 58.4 3.5 49 5-54 78-126 (435)
121 2dyk_A GTP-binding protein; GT 98.7 7.4E-08 2.5E-12 47.2 6.2 46 4-49 42-94 (161)
122 2gj8_A MNME, tRNA modification 98.7 7E-08 2.4E-12 48.4 6.0 57 4-61 45-109 (172)
123 2qu8_A Putative nucleolar GTP- 98.7 2.8E-07 9.5E-12 48.0 7.9 56 6-61 71-137 (228)
124 3iby_A Ferrous iron transport 98.6 1.8E-07 6.1E-12 49.9 6.4 55 4-58 41-107 (256)
125 2wjg_A FEOB, ferrous iron tran 98.6 3.8E-07 1.3E-11 45.8 7.3 55 4-61 47-109 (188)
126 3iev_A GTP-binding protein ERA 98.6 7.4E-07 2.5E-11 48.6 8.0 56 6-61 53-119 (308)
127 3tr5_A RF-3, peptide chain rel 98.5 7.8E-07 2.7E-11 51.8 7.6 51 3-53 74-124 (528)
128 3a1s_A Iron(II) transport prot 98.5 1.5E-06 5E-11 46.4 7.7 47 5-51 46-100 (258)
129 3dpu_A RAB family protein; roc 98.4 4.1E-07 1.4E-11 52.7 5.2 48 10-60 97-144 (535)
130 1zun_B Sulfate adenylate trans 98.4 1.7E-06 6E-11 49.1 7.6 42 6-47 99-140 (434)
131 1wf3_A GTP-binding protein; GT 98.4 2.9E-06 9.9E-11 46.3 8.1 45 6-50 50-102 (301)
132 3sjy_A Translation initiation 98.4 9.4E-07 3.2E-11 49.7 6.1 49 11-59 75-123 (403)
133 3def_A T7I23.11 protein; chlor 98.4 1.1E-06 3.6E-11 46.9 6.0 45 4-48 77-130 (262)
134 1mky_A Probable GTP-binding pr 98.4 3.8E-06 1.3E-10 47.7 8.5 47 4-50 42-97 (439)
135 3i8s_A Ferrous iron transport 98.4 2.6E-06 8.9E-11 45.8 7.4 54 6-59 45-110 (274)
136 3p26_A Elongation factor 1 alp 98.4 9.6E-07 3.3E-11 50.7 5.8 44 5-48 105-148 (483)
137 1svi_A GTP-binding protein YSX 98.4 4.3E-07 1.5E-11 45.8 3.9 42 12-53 70-124 (195)
138 1n0u_A EF-2, elongation factor 98.4 8.5E-07 2.9E-11 53.9 5.7 47 10-56 97-143 (842)
139 1g7s_A Translation initiation 98.4 7.5E-07 2.6E-11 52.5 5.0 43 12-54 71-116 (594)
140 2c78_A Elongation factor TU-A; 98.4 2.2E-06 7.4E-11 48.2 6.5 52 6-58 70-121 (405)
141 3gee_A MNME, tRNA modification 98.4 8.1E-07 2.8E-11 51.2 4.9 48 4-51 274-329 (476)
142 3cb4_D GTP-binding protein LEP 98.3 1.3E-06 4.3E-11 51.6 5.7 48 10-57 70-117 (599)
143 3lxx_A GTPase IMAP family memb 98.3 3.4E-06 1.2E-10 44.2 6.7 44 5-48 72-126 (239)
144 2ywe_A GTP-binding protein LEP 98.3 2.1E-06 7.1E-11 50.8 6.4 48 10-57 72-119 (600)
145 3j2k_7 ERF3, eukaryotic polype 98.3 3.8E-06 1.3E-10 47.9 7.0 42 6-47 90-131 (439)
146 1dar_A EF-G, elongation factor 98.3 4.8E-06 1.6E-10 49.8 7.6 52 4-55 70-121 (691)
147 2h5e_A Peptide chain release f 98.3 3.9E-06 1.3E-10 48.9 6.9 44 4-47 75-118 (529)
148 2elf_A Protein translation elo 98.3 2.5E-06 8.4E-11 47.8 5.8 51 6-58 55-105 (370)
149 1lnz_A SPO0B-associated GTP-bi 98.3 2.4E-06 8E-11 47.5 5.6 58 5-62 199-267 (342)
150 3b1v_A Ferrous iron uptake tra 98.3 3.3E-06 1.1E-10 45.5 6.0 43 10-52 48-98 (272)
151 1f60_A Elongation factor EEF1A 98.3 4E-06 1.4E-10 48.0 6.5 43 5-47 79-121 (458)
152 3k53_A Ferrous iron transport 98.3 7.7E-06 2.6E-10 43.7 7.3 45 5-49 44-96 (271)
153 2cxx_A Probable GTP-binding pr 98.3 3.2E-07 1.1E-11 46.0 1.9 42 12-53 45-98 (190)
154 1r5b_A Eukaryotic peptide chai 98.3 5E-07 1.7E-11 51.8 2.7 42 6-47 116-157 (467)
155 2xtp_A GTPase IMAP family memb 98.2 2.1E-05 7.2E-10 41.6 8.5 56 5-60 65-132 (260)
156 2xex_A Elongation factor G; GT 98.2 1.1E-05 3.8E-10 48.3 7.5 49 5-53 69-117 (693)
157 1xzp_A Probable tRNA modificat 98.2 1E-05 3.6E-10 46.7 7.1 50 4-53 284-342 (482)
158 3izq_1 HBS1P, elongation facto 98.2 5.4E-06 1.9E-10 49.0 5.7 42 5-46 239-280 (611)
159 2e87_A Hypothetical protein PH 98.2 3.9E-05 1.3E-09 42.6 8.6 58 5-62 208-276 (357)
160 1wb1_A Translation elongation 98.1 5.2E-06 1.8E-10 47.9 5.0 47 7-53 69-118 (482)
161 2rdo_7 EF-G, elongation factor 98.1 1.6E-05 5.6E-10 47.7 7.2 40 11-50 82-121 (704)
162 1d2e_A Elongation factor TU (E 98.1 6.1E-06 2.1E-10 46.4 4.9 42 6-47 61-102 (397)
163 2hjg_A GTP-binding protein ENG 98.1 1.7E-06 6E-11 49.0 2.5 43 9-51 49-99 (436)
164 3qq5_A Small GTP-binding prote 98.1 2.2E-05 7.7E-10 44.7 6.9 51 6-56 77-135 (423)
165 3lxw_A GTPase IMAP family memb 98.1 0.00011 3.7E-09 38.9 8.8 44 4-47 63-118 (247)
166 2hjg_A GTP-binding protein ENG 98.0 3.3E-06 1.1E-10 47.9 3.0 55 5-60 217-282 (436)
167 1s0u_A EIF-2-gamma, translatio 98.0 1.1E-05 3.8E-10 45.5 4.9 44 11-54 81-128 (408)
168 3pqc_A Probable GTP-binding pr 98.0 1.3E-05 4.4E-10 40.2 4.2 49 11-59 68-131 (195)
169 1h65_A Chloroplast outer envel 97.9 3.5E-05 1.2E-09 41.2 5.6 42 5-46 81-131 (270)
170 1kk1_A EIF2gamma; initiation o 97.9 2.3E-05 8E-10 44.2 5.0 44 11-54 83-130 (410)
171 3geh_A MNME, tRNA modification 97.9 3E-05 1E-09 44.6 5.4 55 5-60 266-328 (462)
172 4dhe_A Probable GTP-binding pr 97.9 1.2E-05 4.2E-10 41.3 3.3 39 10-48 78-129 (223)
173 4dcu_A GTP-binding protein ENG 97.9 2.2E-05 7.5E-10 44.8 4.6 44 5-48 237-291 (456)
174 1zo1_I IF2, translation initia 97.9 8.3E-06 2.8E-10 47.4 2.7 44 10-53 50-96 (501)
175 4dcu_A GTP-binding protein ENG 97.8 4.6E-06 1.6E-10 47.6 1.1 39 9-47 69-115 (456)
176 2dy1_A Elongation factor G; tr 97.8 0.00024 8.2E-09 42.5 7.5 44 5-48 68-111 (665)
177 3avx_A Elongation factor TS, e 97.7 3.8E-05 1.3E-09 48.7 4.1 42 6-47 354-395 (1289)
178 2ohf_A Protein OLA1, GTP-bindi 97.7 4.2E-05 1.4E-09 43.4 4.0 43 11-53 86-135 (396)
179 2qpt_A EH domain-containing pr 97.7 4.4E-05 1.5E-09 44.7 4.2 49 12-60 155-214 (550)
180 2qtf_A Protein HFLX, GTP-bindi 97.7 0.00045 1.5E-08 38.7 8.0 44 4-48 219-271 (364)
181 3izy_P Translation initiation 97.7 6.8E-06 2.3E-10 48.1 0.4 38 11-48 52-89 (537)
182 1jal_A YCHF protein; nucleotid 97.7 0.0003 1E-08 39.6 6.8 36 11-46 66-108 (363)
183 2aka_B Dynamin-1; fusion prote 97.6 0.00015 5.3E-09 38.8 5.2 49 10-58 124-186 (299)
184 1wxq_A GTP-binding protein; st 97.5 0.00025 8.6E-09 40.1 5.4 37 11-47 71-114 (397)
185 2j69_A Bacterial dynamin-like 97.5 0.00023 7.8E-09 42.8 4.8 45 12-56 175-222 (695)
186 1jwy_B Dynamin A GTPase domain 97.4 0.00024 8.4E-09 38.4 4.2 38 9-46 129-179 (315)
187 3t34_A Dynamin-related protein 97.3 0.00051 1.8E-08 38.1 4.9 39 10-48 135-186 (360)
188 1ega_A Protein (GTP-binding pr 97.3 0.00041 1.4E-08 37.8 4.4 41 6-46 51-100 (301)
189 2yv5_A YJEQ protein; hydrolase 97.3 0.00026 8.8E-09 38.6 3.1 50 11-60 50-106 (302)
190 3mca_A HBS1, elongation factor 97.2 1.6E-05 5.6E-10 46.9 -1.8 38 9-46 253-290 (592)
191 2dby_A GTP-binding protein; GD 97.2 0.0039 1.3E-07 35.1 7.2 37 10-46 68-111 (368)
192 3t5d_A Septin-7; GTP-binding p 97.0 0.0033 1.1E-07 33.6 5.8 38 9-46 63-127 (274)
193 3vqt_A RF-3, peptide chain rel 97.0 0.0038 1.3E-07 36.8 6.3 44 3-46 92-135 (548)
194 1mky_A Probable GTP-binding pr 96.7 0.0047 1.6E-07 35.2 5.0 48 5-52 222-281 (439)
195 2qag_A Septin-2, protein NEDD5 96.7 0.00042 1.4E-08 38.7 0.7 28 11-38 95-136 (361)
196 1udx_A The GTP-binding protein 96.3 0.056 1.9E-06 31.0 7.9 49 11-60 205-260 (416)
197 1pui_A ENGB, probable GTP-bind 96.0 0.02 6.7E-07 29.0 4.7 39 12-50 73-124 (210)
198 4fn5_A EF-G 1, elongation fact 95.9 0.06 2E-06 32.7 7.1 37 10-46 84-120 (709)
199 3j25_A Tetracycline resistance 95.5 0.0042 1.4E-07 37.2 1.0 40 7-46 63-102 (638)
200 2x2e_A Dynamin-1; nitration, h 94.4 0.072 2.5E-06 29.5 4.0 36 10-45 129-178 (353)
201 4a9a_A Ribosome-interacting GT 93.6 0.53 1.8E-05 26.8 7.6 47 3-49 111-164 (376)
202 1ni3_A YCHF GTPase, YCHF GTP-b 93.3 0.57 1.9E-05 26.8 6.4 36 11-46 85-127 (392)
203 1yrb_A ATP(GTP)binding protein 92.8 0.16 5.3E-06 26.6 3.4 35 11-46 109-149 (262)
204 3p32_A Probable GTPase RV1496/ 92.5 0.19 6.4E-06 28.0 3.6 37 9-48 170-206 (355)
205 2p67_A LAO/AO transport system 91.8 0.14 4.7E-06 28.4 2.6 36 10-48 148-183 (341)
206 3h2y_A GTPase family protein; 90.6 0.2 6.8E-06 28.1 2.5 29 20-48 55-83 (368)
207 3ec1_A YQEH GTPase; atnos1, at 90.1 0.21 7.1E-06 28.1 2.3 30 20-49 57-86 (369)
208 2www_A Methylmalonic aciduria 89.4 0.53 1.8E-05 26.2 3.5 38 9-49 165-202 (349)
209 2qnr_A Septin-2, protein NEDD5 81.6 0.71 2.4E-05 25.2 1.5 20 10-29 75-101 (301)
210 1v7p_C Integrin alpha-2; snake 77.0 4.3 0.00015 20.4 3.5 28 36-63 7-35 (200)
211 1ijb_A VON willebrand factor; 75.2 6.3 0.00022 19.9 4.0 30 35-64 13-45 (202)
212 1bif_A 6-phosphofructo-2-kinas 73.9 1.2 4E-05 25.8 1.0 43 13-56 89-141 (469)
213 3zvr_A Dynamin-1; hydrolase, D 73.6 8.8 0.0003 24.2 4.7 37 11-47 150-200 (772)
214 2xgg_A Microneme protein 2; A/ 73.4 6.7 0.00023 19.3 3.9 29 35-63 17-48 (178)
215 1puj_A YLQF, conserved hypothe 72.9 4 0.00014 22.1 2.9 34 17-50 5-39 (282)
216 2b2x_A Integrin alpha-1; compu 72.0 6.8 0.00023 20.0 3.6 28 36-63 23-51 (223)
217 2qag_C Septin-7; cell cycle, c 71.7 3.2 0.00011 23.9 2.4 14 11-24 88-101 (418)
218 3zqk_A VON willebrand factor; 71.7 7.9 0.00027 19.4 3.9 31 34-64 20-53 (199)
219 1pt6_A Integrin alpha-1; cell 71.5 8.1 0.00028 19.5 3.9 28 36-63 8-36 (213)
220 2wsm_A Hydrogenase expression/ 69.5 1.9 6.6E-05 21.8 1.2 35 10-47 108-142 (221)
221 1mjn_A Integrin alpha-L; rossm 68.9 8.9 0.0003 18.9 3.6 27 37-63 4-33 (179)
222 1atz_A VON willebrand factor; 68.5 9.1 0.00031 18.9 3.9 28 36-63 6-36 (189)
223 1zpw_X Hypothetical protein TT 68.1 7.1 0.00024 17.5 3.6 22 37-58 5-26 (90)
224 2j37_W Signal recognition part 67.2 17 0.00059 21.6 5.9 40 9-48 182-227 (504)
225 1mf7_A Integrin alpha M; cell 66.2 10 0.00036 18.7 3.7 28 36-63 6-36 (194)
226 3exc_X Uncharacterized protein 65.7 8.3 0.00029 17.4 3.8 23 36-58 4-26 (91)
227 2qm8_A GTPase/ATPase; G protei 64.8 4.5 0.00015 22.4 2.1 36 9-47 146-181 (337)
228 2p62_A Hypothetical protein PH 60.3 18 0.00063 19.6 5.2 56 5-63 52-114 (241)
229 4dzz_A Plasmid partitioning pr 60.1 14 0.00049 18.2 5.0 36 10-47 75-110 (206)
230 2ivy_A Hypothetical protein SS 58.4 13 0.00044 17.1 3.6 48 13-61 6-57 (101)
231 4e6n_A Metallophosphoesterase; 57.6 18 0.00062 21.2 3.6 51 12-62 260-322 (427)
232 3cnl_A YLQF, putative uncharac 54.1 20 0.00068 19.1 3.4 19 30-48 17-35 (262)
233 1q0p_A Complement factor B; VO 53.4 20 0.0007 17.9 3.6 28 35-62 15-45 (223)
234 3oq2_A Crispr-associated prote 49.3 20 0.00067 16.5 3.2 11 37-47 9-19 (103)
235 4hqf_A Thrombospondin-related 46.5 32 0.0011 18.2 4.2 30 35-64 21-54 (281)
236 2odp_A Complement C2; C3/C5 co 46.2 33 0.0011 19.9 3.6 27 37-63 11-40 (509)
237 1j8m_F SRP54, signal recogniti 45.1 37 0.0013 18.5 5.8 39 9-47 179-225 (297)
238 2i0x_A Hypothetical protein PF 44.2 22 0.00076 15.7 2.5 9 38-46 3-11 (85)
239 1rrk_A Complement factor B; BB 44.2 37 0.0013 19.5 3.6 26 38-63 4-32 (497)
240 3ha2_A NADPH-quinone reductase 43.7 30 0.001 17.4 2.9 48 13-61 31-78 (177)
241 3hrz_D Complement factor B; se 40.4 43 0.0015 20.4 3.6 27 37-63 245-274 (741)
242 3q9l_A Septum site-determining 39.5 40 0.0014 17.3 5.6 48 10-60 113-160 (260)
243 2amj_A Modulator of drug activ 39.2 40 0.0014 17.2 5.2 51 10-61 47-97 (204)
244 4hqo_A Sporozoite surface prot 39.1 44 0.0015 17.7 3.7 28 36-63 19-50 (266)
245 4gi5_A Quinone reductase; prot 39.0 28 0.00095 19.0 2.5 32 31-62 109-140 (280)
246 3lcm_A SMU.1420, putative oxid 38.9 33 0.0011 17.3 2.6 31 31-61 70-100 (196)
247 3rpe_A MDAB, modulator of drug 38.8 35 0.0012 17.9 2.8 49 12-61 62-110 (218)
248 4es1_A BH0342 protein; ferredo 37.8 33 0.0011 15.8 3.4 12 36-47 5-16 (100)
249 4ftd_A Uncharacterized protein 36.5 51 0.0017 19.7 3.3 26 34-59 365-390 (453)
250 1jey_A KU70; double-strand DNA 36.4 49 0.0017 20.1 3.4 31 32-62 32-72 (609)
251 3n2n_F Anthrax toxin receptor 34.8 42 0.0014 16.2 3.6 26 37-62 9-36 (185)
252 1n3y_A Integrin alpha-X; alpha 34.3 45 0.0015 16.4 4.7 30 34-63 8-40 (198)
253 2ph1_A Nucleotide-binding prot 34.3 52 0.0018 17.2 5.7 50 9-59 127-176 (262)
254 3f2v_A General stress protein 33.6 38 0.0013 17.3 2.4 32 30-61 54-85 (192)
255 2hpv_A FMN-dependent NADH-azor 33.4 45 0.0015 16.7 2.6 31 31-61 91-121 (208)
256 3kjh_A CO dehydrogenase/acetyl 31.1 56 0.0019 16.5 5.3 43 10-55 131-173 (254)
257 3r6w_A FMN-dependent NADH-azor 30.8 52 0.0018 16.6 2.6 31 31-61 84-114 (212)
258 2pd2_A Hypothetical protein ST 30.2 43 0.0015 14.9 3.2 21 41-61 4-24 (108)
259 4aff_A Nitrogen regulatory pro 29.9 49 0.0017 15.5 2.3 13 34-46 86-98 (116)
260 1d4a_A DT-diaphorase, quinone 29.8 53 0.0018 17.6 2.6 30 32-61 91-120 (273)
261 1m2o_A SEC23, protein transpor 29.6 1.1E+02 0.0037 19.4 4.8 30 34-63 120-150 (768)
262 2yu6_A YTH domain-containing p 29.2 37 0.0013 16.6 1.8 34 14-49 28-61 (141)
263 3lk4_B F-actin-capping protein 29.0 47 0.0016 18.4 2.3 21 25-45 105-125 (277)
264 1rli_A Trp repressor binding p 28.9 56 0.0019 15.8 2.8 31 30-60 67-97 (184)
265 4akr_B F-actin-capping protein 28.9 47 0.0016 18.6 2.3 22 25-46 123-144 (290)
266 3pg5_A Uncharacterized protein 27.9 84 0.0029 17.5 5.9 41 10-53 153-193 (361)
267 2nut_A Protein transport prote 27.8 1.2E+02 0.0041 19.2 4.9 31 33-63 130-161 (769)
268 3ibs_A Conserved hypothetical 27.8 64 0.0022 16.1 4.2 30 34-63 10-47 (218)
269 1jey_B KU80; double-strand DNA 27.4 93 0.0032 18.7 3.5 28 35-62 7-43 (565)
270 4a29_A Engineered retro-aldol 27.3 77 0.0026 17.4 2.9 30 26-55 118-147 (258)
271 3k9g_A PF-32 protein; ssgcid, 27.2 72 0.0025 16.6 6.0 45 10-57 144-188 (267)
272 3k6s_A Integrin alpha-X; cell 26.8 1.2E+02 0.004 20.2 4.0 30 35-64 130-162 (1095)
273 2l48_A N-acetylmuramoyl-L-alan 26.7 53 0.0018 14.8 2.8 26 34-59 51-77 (85)
274 1reg_X T4 REGA; translational 26.1 52 0.0018 15.9 1.9 19 42-60 4-22 (122)
275 1wcv_1 SOJ, segregation protei 25.4 79 0.0027 16.4 5.6 36 9-46 110-145 (257)
276 1hyq_A MIND, cell division inh 24.2 83 0.0029 16.2 6.1 46 11-59 111-156 (263)
277 2eg2_A Nitrogen regulatory pro 24.1 54 0.0019 15.0 1.8 13 35-47 87-99 (112)
278 2iue_A Pactolus I-domain; memb 23.7 90 0.0031 16.4 3.1 26 37-62 5-32 (212)
279 1t0i_A YLR011WP; FMN binding p 23.6 68 0.0023 15.8 2.2 32 29-60 79-110 (191)
280 1ujo_A Transgelin; CH domain, 23.4 72 0.0025 15.5 2.2 18 46-63 7-24 (144)
281 3tem_A Ribosyldihydronicotinam 23.0 87 0.003 16.3 2.6 30 32-61 90-119 (228)
282 1t5b_A Acyl carrier protein ph 22.8 49 0.0017 16.3 1.6 32 30-61 82-113 (201)
283 3l9w_A Glutathione-regulated p 22.8 95 0.0033 17.9 2.9 32 30-61 288-319 (413)
284 3p0r_A Azoreductase; structura 22.5 89 0.003 15.9 2.6 31 31-61 89-119 (211)
285 3end_A Light-independent proto 22.4 1E+02 0.0034 16.5 6.1 49 10-60 156-204 (307)
286 3aa0_B F-actin-capping protein 22.4 75 0.0026 17.3 2.3 22 24-45 104-125 (244)
287 3ea0_A ATPase, para family; al 22.3 88 0.003 15.8 5.5 47 11-60 119-165 (245)
288 2x31_A Magnesium-chelatase 60 22.1 81 0.0028 15.3 3.2 25 37-61 7-34 (189)
289 3dm5_A SRP54, signal recogniti 22.1 1.3E+02 0.0045 17.7 5.1 40 10-49 182-227 (443)
290 3u7i_A FMN-dependent NADH-azor 21.9 95 0.0032 16.1 2.6 31 31-61 91-121 (223)
291 1hwu_A PII protein; herbaspiri 21.9 45 0.0015 15.3 1.3 12 35-46 87-98 (112)
292 3bzq_A Nitrogen regulatory pro 21.8 46 0.0016 15.3 1.3 13 35-47 89-101 (114)
293 2g3w_A YAEQ protein, hypotheti 21.7 97 0.0033 16.1 4.1 33 11-43 76-108 (182)
294 1g3q_A MIND ATPase, cell divis 21.6 91 0.0031 15.7 6.7 47 11-60 112-158 (237)
295 3t9z_A GLNK3, nitrogen regulat 21.6 48 0.0016 15.6 1.4 13 34-46 86-98 (118)
296 2gw8_A PII signal transduction 21.0 49 0.0017 15.3 1.3 13 34-46 88-100 (114)
297 1x4t_A Hypothetical protein LO 20.9 38 0.0013 15.5 0.9 20 45-64 18-37 (92)
298 3mhy_A PII-like protein PZ; PI 20.8 49 0.0017 15.3 1.3 13 34-46 86-98 (112)
299 4fx5_A VON willebrand factor t 20.8 1.4E+02 0.0048 17.5 3.7 30 34-63 76-110 (464)
300 3ncq_A Nitrogen regulatory pro 20.2 52 0.0018 15.6 1.3 13 34-46 86-98 (119)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.65 E-value=3.6e-16 Score=81.77 Aligned_cols=55 Identities=18% Similarity=0.463 Sum_probs=51.2
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
..+.+++||++|+++++.+++.|+++++++++|||++++++|+++..|+..+.+.
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~ 114 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 114 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999987653
No 2
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.64 E-value=1.4e-15 Score=85.47 Aligned_cols=60 Identities=30% Similarity=0.601 Sum_probs=55.5
Q ss_pred EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----------hhhHHHHHHHHHHHhcc
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRIVEARDELHRMLNE 63 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~sf~~~~~~~~~~~~~ 63 (65)
.++..+++.+++||++|+++++..|..||++++++|+|||+++ .++|.++..|+..+.++
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred EEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 4566778999999999999999999999999999999999999 88999999999998765
No 3
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.64 E-value=4.4e-16 Score=86.00 Aligned_cols=62 Identities=26% Similarity=0.489 Sum_probs=56.8
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC----------ChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~sf~~~~~~~~~~~~~ 63 (65)
+..+++.+++.+++||++|+++++..|..||++++++|+|+|++ +.++|.+...|+..+.++
T Consensus 152 ~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 152 HEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 45667778899999999999999999999999999999999999 788999999999998765
No 4
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.62 E-value=1.3e-15 Score=83.76 Aligned_cols=62 Identities=24% Similarity=0.506 Sum_probs=55.5
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC----------ChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~sf~~~~~~~~~~~~~ 63 (65)
+..+++.+++.+++||++|+++++..|..||++++++|+|+|++ +.++|.+...|++.+.++
T Consensus 158 ~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 158 IEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp EEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred EEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 35667888999999999999999999999999999999999665 678899999999998765
No 5
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.62 E-value=2.3e-15 Score=83.40 Aligned_cols=61 Identities=30% Similarity=0.590 Sum_probs=55.3
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----------hhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~sf~~~~~~~~~~~~~ 63 (65)
..++..+++.+++||++|+++++..|..||++++++|+|+|+++ ..++.++..|+..+.++
T Consensus 185 ~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 185 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 45667788999999999999999999999999999999999999 56799999999998764
No 6
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.58 E-value=3.2e-14 Score=72.44 Aligned_cols=62 Identities=45% Similarity=0.821 Sum_probs=56.7
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
++..++.....+.+||++|++.+...+..++++++++++|+|+++.++|.++..|+.+++++
T Consensus 54 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~ 115 (199)
T 4bas_A 54 NVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKH 115 (199)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred eEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhC
Confidence 45667788899999999999999999999999999999999999999999999999988754
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.57 E-value=5.4e-14 Score=69.73 Aligned_cols=62 Identities=90% Similarity=1.421 Sum_probs=55.8
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+...+......+.+||++|++.++..+..++++++++++|+|++++++|..+..|+.++++.
T Consensus 35 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 96 (164)
T 1r8s_A 35 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 96 (164)
T ss_dssp CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred eEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 45567778899999999999999999999999999999999999999999999999887653
No 8
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.57 E-value=9.2e-15 Score=81.26 Aligned_cols=61 Identities=30% Similarity=0.574 Sum_probs=48.8
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----------hhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~sf~~~~~~~~~~~~~ 63 (65)
..++..+++.+++||++|+++++..|..||++++++|+|+|+++ ..+|.++..|+..+.++
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp EEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 34567788999999999999999999999999999999999999 77999999999998765
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.55 E-value=8.3e-14 Score=70.55 Aligned_cols=61 Identities=49% Similarity=0.960 Sum_probs=54.8
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+.++...+..+.+||++|++.++..|..++++++++++|+|++++++|.++..|+.++++.
T Consensus 52 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 112 (181)
T 1fzq_A 52 IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112 (181)
T ss_dssp EEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC
T ss_pred EEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhC
Confidence 4566667889999999999999999999999999999999999999999999999887653
No 10
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.54 E-value=1.2e-14 Score=80.61 Aligned_cols=55 Identities=25% Similarity=0.607 Sum_probs=49.3
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC----------ChhhHHHHHHHHHHHhcc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRIVEARDELHRMLNE 63 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~sf~~~~~~~~~~~~~ 63 (65)
+.+.+++||++|+++++..|..||++++++|+|+|++ +.++|+++..|++++.++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~ 245 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 245 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999998 888999999999998764
No 11
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.4e-13 Score=69.79 Aligned_cols=62 Identities=47% Similarity=0.866 Sum_probs=52.1
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+..++...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..|+.+++++
T Consensus 51 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 112 (187)
T 1zj6_A 51 NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112 (187)
T ss_dssp SCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS
T ss_pred ceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence 34566777899999999999999999999999999999999999999999999999888754
No 12
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.52 E-value=1.5e-13 Score=70.55 Aligned_cols=61 Identities=30% Similarity=0.791 Sum_probs=51.0
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
...+...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..|+.++++.
T Consensus 61 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~ 121 (198)
T 1f6b_A 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 121 (198)
T ss_dssp CEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred eEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 3456667799999999999999999999999999999999999999999999999888653
No 13
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.52 E-value=1.6e-13 Score=70.07 Aligned_cols=60 Identities=85% Similarity=1.403 Sum_probs=50.2
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...++.....+.+||++|++.++..+..++++++++++|+|++++++|..+..|+.++++
T Consensus 65 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~ 124 (192)
T 2b6h_A 65 VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ 124 (192)
T ss_dssp EEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc
Confidence 456777889999999999999999999999999999999999999999999999988765
No 14
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.51 E-value=2.1e-13 Score=68.86 Aligned_cols=62 Identities=47% Similarity=0.866 Sum_probs=55.7
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
++.++...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..++.++++.
T Consensus 56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~ 117 (181)
T 2h17_A 56 NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 117 (181)
T ss_dssp SCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTC
T ss_pred eeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 34566777899999999999999999999999999999999999999999999999888753
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.50 E-value=3.2e-13 Score=68.60 Aligned_cols=61 Identities=46% Similarity=0.881 Sum_probs=54.6
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
...+...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..|+.++++.
T Consensus 59 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 119 (190)
T 2h57_A 59 IEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH 119 (190)
T ss_dssp EEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHS
T ss_pred EEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 4456666789999999999999999999999999999999999999999999999888754
No 16
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.50 E-value=5.5e-13 Score=67.99 Aligned_cols=60 Identities=42% Similarity=0.810 Sum_probs=54.5
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..++...+..+.+||++|++.++..+..++++++++++|+|++++++|+++..|+.++++
T Consensus 59 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 118 (190)
T 1m2o_B 59 SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118 (190)
T ss_dssp EEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred eEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHc
Confidence 455666779999999999999999999999999999999999999999999999988865
No 17
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.49 E-value=2.2e-13 Score=68.85 Aligned_cols=61 Identities=46% Similarity=0.962 Sum_probs=55.1
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
..++......+.+||++|++.+...+..++++++++++|+|++++++|+++.+|+.+++++
T Consensus 54 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 114 (186)
T 1ksh_A 54 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE 114 (186)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhC
Confidence 4556667899999999999999999999999999999999999999999999999888754
No 18
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.49 E-value=3.7e-13 Score=66.97 Aligned_cols=61 Identities=59% Similarity=1.036 Sum_probs=54.8
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
...+......+.+||++|++.+...+..++++++++++|+|++++++|.++..++.++++.
T Consensus 43 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 103 (171)
T 1upt_A 43 VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE 103 (171)
T ss_dssp EEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC
T ss_pred eEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 4456677899999999999999999999999999999999999999999999998887654
No 19
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.49 E-value=2.2e-13 Score=69.03 Aligned_cols=62 Identities=58% Similarity=1.075 Sum_probs=55.9
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+..++......+.+||++|++.++..+..++++++++++|+|++++++|.++..++.++++.
T Consensus 57 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 118 (189)
T 2x77_A 57 NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE 118 (189)
T ss_dssp CEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTC
T ss_pred EEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 45667778899999999999999999999999999999999999999999999999887653
No 20
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.48 E-value=5e-13 Score=66.95 Aligned_cols=59 Identities=19% Similarity=0.415 Sum_probs=51.3
Q ss_pred EEEEECC---EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 4 ETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 4 ~~~~~~~---~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+...+ ..+.+||++|++.+...+..++++++++++|+|++++++|+++..|+..+.+
T Consensus 46 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 107 (178)
T 2hxs_A 46 RRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKK 107 (178)
T ss_dssp EEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3444443 7899999999999999999999999999999999999999999888877654
No 21
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.48 E-value=4.1e-13 Score=68.22 Aligned_cols=61 Identities=28% Similarity=0.831 Sum_probs=54.9
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+..+......+.+||++|++.+...+..++++++++++|+|++++++|..+..|+.++++.
T Consensus 59 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~ 119 (188)
T 1zd9_A 59 MRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119 (188)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 3456677899999999999999999999999999999999999999999999999888653
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.46 E-value=5.4e-13 Score=68.53 Aligned_cols=58 Identities=21% Similarity=0.548 Sum_probs=51.2
Q ss_pred EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+...+ +.+.+||++|++.+...+..++++++++++|+|++++++|+++..|+..+.+
T Consensus 70 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 129 (201)
T 2hup_A 70 TLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK 129 (201)
T ss_dssp EEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHH
T ss_pred EEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 344443 7899999999999999999999999999999999999999999999888754
No 23
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=8.9e-13 Score=66.34 Aligned_cols=62 Identities=58% Similarity=1.069 Sum_probs=51.8
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
...++...+..+.+||++|++.+...+..++++++++++|+|++++++|.++..|+.++++.
T Consensus 53 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 114 (183)
T 1moz_A 53 NVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 114 (183)
T ss_dssp CEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS
T ss_pred ceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcC
Confidence 45566777899999999999999999999999999999999999999999999999888753
No 24
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.44 E-value=6.7e-13 Score=66.86 Aligned_cols=58 Identities=22% Similarity=0.573 Sum_probs=42.3
Q ss_pred EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+...+ +.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+..+.+
T Consensus 49 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 108 (183)
T 2fu5_C 49 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE 108 (183)
T ss_dssp EEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 344444 7899999999999999999999999999999999999999999999887754
No 25
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.42 E-value=7.2e-13 Score=68.71 Aligned_cols=57 Identities=11% Similarity=0.332 Sum_probs=48.9
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHH-HHHHHHHHhc
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVE-ARDELHRMLN 62 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~-~~~~~~~~~~ 62 (65)
++...+.+.+||++|++.+...+..++++++++++|||++++++|.+ +..|+..+.+
T Consensus 70 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~ 127 (214)
T 3q3j_B 70 TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127 (214)
T ss_dssp C--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH
T ss_pred ECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999 5777776643
No 26
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.41 E-value=1.5e-12 Score=74.25 Aligned_cols=62 Identities=77% Similarity=1.341 Sum_probs=56.4
Q ss_pred cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+..+++.+++.+.+||++|++.++..+..+++.++++|+|||++++++|.++..|+.++++.
T Consensus 357 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~ 418 (497)
T 3lvq_E 357 NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 418 (497)
T ss_dssp EEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred eEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhh
Confidence 35567778899999999999999999999999999999999999999999999999988654
No 27
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=2.9e-12 Score=66.03 Aligned_cols=52 Identities=19% Similarity=0.488 Sum_probs=48.1
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~ 126 (201)
T 2ew1_A 75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ 126 (201)
T ss_dssp EEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998887653
No 28
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2e-12 Score=67.24 Aligned_cols=58 Identities=22% Similarity=0.467 Sum_probs=50.1
Q ss_pred EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+...+ +.+.+||++|++.+...+..+++.++++|+|+|++++.+|..+..|+..+..
T Consensus 54 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~ 113 (223)
T 3cpj_B 54 TLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE 113 (223)
T ss_dssp EEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHH
T ss_pred EEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 344444 7899999999999999999999999999999999999999999999887754
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.40 E-value=8.3e-13 Score=66.41 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=48.9
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+.++.+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 106 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM 106 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999999999999998887653
No 30
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=66.47 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=50.0
Q ss_pred EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+...+.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+.
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 124 (201)
T 3oes_A 68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124 (201)
T ss_dssp ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 446688999999999999999999999999999999999999999999999888653
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.39 E-value=3.4e-12 Score=64.31 Aligned_cols=51 Identities=24% Similarity=0.551 Sum_probs=47.7
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+.+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 109 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 109 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998887764
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=1.3e-12 Score=64.84 Aligned_cols=53 Identities=25% Similarity=0.572 Sum_probs=48.8
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|++++.++.++..|+..+.+
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE 103 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999998887754
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.39 E-value=3.2e-12 Score=63.97 Aligned_cols=59 Identities=29% Similarity=0.630 Sum_probs=51.6
Q ss_pred EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+...+ +.+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.+
T Consensus 49 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (181)
T 3tw8_B 49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ 109 (181)
T ss_dssp EEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3344444 7899999999999999999999999999999999999999999999887754
No 34
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.39 E-value=3.7e-12 Score=64.62 Aligned_cols=59 Identities=25% Similarity=0.607 Sum_probs=51.2
Q ss_pred EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+...+ +.+.+||++|++.+...+..+++.++++++|+|++++++|+.+..|+..+..
T Consensus 56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 116 (196)
T 3tkl_A 56 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116 (196)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 3344444 7899999999999999999999999999999999999999999998877643
No 35
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.38 E-value=1.7e-12 Score=66.38 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=49.2
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++.+|..+..|+..+..
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 124 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS 124 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999888764
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.38 E-value=1.7e-12 Score=64.33 Aligned_cols=53 Identities=23% Similarity=0.550 Sum_probs=48.9
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.+
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 106 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998887754
No 37
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.38 E-value=4.3e-13 Score=73.92 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=34.9
Q ss_pred CCEEEEEEECCCCcCchh---hHHhhhhCCcEEEEEEECCCh
Q 037770 9 KNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~---~~~~~~~~~~~ii~v~d~~~~ 47 (65)
..+.+++||++|+++++. .++.||++++++|+|||++++
T Consensus 44 ~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~ 85 (331)
T 3r7w_B 44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE 85 (331)
T ss_dssp SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC
T ss_pred cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch
Confidence 458899999999999964 468999999999999999987
No 38
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.37 E-value=1.4e-12 Score=64.73 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
..+.+.+||++|++.+...+..+++.++++++|||++++++|+.+..|+.++.+.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 101 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999999999999999999999888653
No 39
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.37 E-value=9.8e-13 Score=66.24 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=48.5
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 117 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 117 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999888754
No 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.37 E-value=1.4e-12 Score=65.25 Aligned_cols=52 Identities=21% Similarity=0.472 Sum_probs=48.4
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+.+||++|++.+...+..++++++++++|+|+++++++..+..|+.++++
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 108 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR 108 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999888754
No 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.37 E-value=3.8e-12 Score=64.55 Aligned_cols=53 Identities=23% Similarity=0.547 Sum_probs=48.5
Q ss_pred EEEEEEECCCCcCch-hhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 11 ISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~-~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
+.+.+||++|++.+. ..+..++++++++++|+|++++.+|..+..|+.++.+.
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~ 122 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 122 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 789999999999988 88999999999999999999999999999998887653
No 42
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.37 E-value=1.1e-12 Score=64.98 Aligned_cols=54 Identities=17% Similarity=0.368 Sum_probs=49.3
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
....+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 102 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR 102 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999988887764
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.37 E-value=2.2e-12 Score=64.69 Aligned_cols=53 Identities=21% Similarity=0.515 Sum_probs=49.0
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|++++.+|+.+..|+..+.+
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 112 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA 112 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999887764
No 44
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.37 E-value=3e-12 Score=70.27 Aligned_cols=61 Identities=90% Similarity=1.424 Sum_probs=50.6
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
...++...+.+.+||++|++.+...+..+++.++++|+|||++++++|..+..++.++++.
T Consensus 201 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~ 261 (329)
T 3o47_A 201 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 261 (329)
T ss_dssp EEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTC
T ss_pred EEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhh
Confidence 4567778899999999999999999999999999999999999999999999998887654
No 45
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.37 E-value=3.3e-12 Score=64.91 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=48.8
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++++++.+..|+..+.+
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~ 121 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999887754
No 46
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.37 E-value=1.3e-12 Score=66.04 Aligned_cols=53 Identities=9% Similarity=0.290 Sum_probs=46.9
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRML 61 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~ 61 (65)
..+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~ 106 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999999999999999998 56666553
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.36 E-value=1.9e-12 Score=64.01 Aligned_cols=53 Identities=17% Similarity=0.438 Sum_probs=45.9
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..+++.++++++|+|+++++++..+..|+.++.+
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 103 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR 103 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999998887764
No 48
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.36 E-value=7.6e-12 Score=64.14 Aligned_cols=53 Identities=23% Similarity=0.583 Sum_probs=48.6
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++.+|..+..|+..+..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~ 108 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999998887653
No 49
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.36 E-value=1.2e-12 Score=67.40 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=45.5
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML 61 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~ 61 (65)
..+.+.+||++|++.+...+..++++++++++|+|++++++|.++. .|+..+.
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~ 108 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR 108 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4478999999999999999999999999999999999999999987 6766654
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.36 E-value=1.2e-11 Score=63.30 Aligned_cols=52 Identities=19% Similarity=0.544 Sum_probs=47.7
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
...+.+||++|++.+...+..+++.++++++|+|++++.++..+..|+..+.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~ 127 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIE 127 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999999988887664
No 51
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.36 E-value=2.5e-12 Score=65.71 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=46.9
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++.+++++++|+|++++++|.++. .|+..+..
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 120 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999987 67666543
No 52
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1.7e-12 Score=66.02 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=47.5
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++++|.++. .|+..+.+
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 118 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999987 67666543
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.36 E-value=7e-12 Score=63.87 Aligned_cols=51 Identities=20% Similarity=0.539 Sum_probs=47.0
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+.+.+||++|++.+...+..++++++++++|+|+++..+++.+..|+..+.
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~ 125 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID 125 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999988876654
No 54
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.36 E-value=1.4e-12 Score=66.12 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=46.7
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC------ChhhHHHHHHHHHHH
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN------DRDRIVEARDELHRM 60 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~------~~~sf~~~~~~~~~~ 60 (65)
..+.+.+||++|++.+...+..++++++++++|+|++ +.++|..+..|+.++
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~ 129 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence 4478999999999999999999999999999999999 667888888888776
No 55
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.35 E-value=2.2e-12 Score=65.54 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=43.9
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+.+.+||++|++.++.. ..++++++++++|||++++++|+++..|+..+.+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~ 119 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLAL 119 (187)
T ss_dssp EEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3478899999999988775 6799999999999999999999999999888764
No 56
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=66.82 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=47.7
Q ss_pred CCEEEEEEECCCCcCchh-hHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 9 KNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+.+.+||++|++.+.. ++..++++++++++|||++++++|.++..|+.++.+
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~ 124 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 124 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 347889999999988765 788899999999999999999999999999988754
No 57
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.7e-12 Score=65.10 Aligned_cols=53 Identities=17% Similarity=0.527 Sum_probs=40.8
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++.+++++..|+..+..
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 111 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE 111 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999988887654
No 58
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.35 E-value=1.5e-12 Score=64.76 Aligned_cols=53 Identities=25% Similarity=0.607 Sum_probs=41.7
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
..+.+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 105 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 105 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999999999999999999998887764
No 59
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.35 E-value=1.3e-11 Score=63.14 Aligned_cols=53 Identities=19% Similarity=0.507 Sum_probs=48.8
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 108 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 108 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998887753
No 60
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.35 E-value=1.7e-12 Score=67.04 Aligned_cols=53 Identities=9% Similarity=0.290 Sum_probs=47.2
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRML 61 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~ 61 (65)
..+.+.+||++|++.+...+..++++++++++|||++++++|.++ ..|+..+.
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~ 127 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999998 67766654
No 61
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.35 E-value=2e-12 Score=65.77 Aligned_cols=52 Identities=13% Similarity=0.313 Sum_probs=45.5
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHH
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRM 60 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~ 60 (65)
..+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 121 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI 121 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999997 4555544
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.34 E-value=3.6e-12 Score=62.95 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=48.6
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|++++.++..+..|+.++.+
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 102 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIR 102 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999887764
No 63
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=3.4e-12 Score=64.96 Aligned_cols=54 Identities=19% Similarity=0.450 Sum_probs=49.4
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
....+.+||++|++.+...+..+++.++++++|+|+++++++..+..|+..+.+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~ 123 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE 123 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999887754
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=8.9e-12 Score=63.11 Aligned_cols=53 Identities=30% Similarity=0.636 Sum_probs=49.1
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..+++.++++++|+|++++.++..+..|+.++.+
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 115 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET 115 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTT
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999888765
No 65
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.34 E-value=1.8e-11 Score=61.19 Aligned_cols=52 Identities=13% Similarity=0.464 Sum_probs=48.0
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..++++++++++|+|++++.++..+..|+.++..
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 107 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999888877653
No 66
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.34 E-value=3.2e-12 Score=64.18 Aligned_cols=55 Identities=11% Similarity=0.250 Sum_probs=43.4
Q ss_pred EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770 7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML 61 (65)
Q Consensus 7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~ 61 (65)
++..+.+.+||++|++.+...+..++++++++++|+|++++++|+++. .|+..+.
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 107 (182)
T 3bwd_D 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107 (182)
T ss_dssp ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 344577889999999999999999999999999999999999999987 5666554
No 67
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=6.5e-12 Score=64.49 Aligned_cols=59 Identities=22% Similarity=0.558 Sum_probs=51.1
Q ss_pred EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+...+ +.+.+||++|++.+...+..+++.++++++|+|++++.+|..+..|+..+..
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 120 (213)
T 3cph_A 60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE 120 (213)
T ss_dssp EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3444444 7899999999999999999999999999999999999999999888887654
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.34 E-value=1.3e-11 Score=61.69 Aligned_cols=52 Identities=17% Similarity=0.453 Sum_probs=48.2
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 114 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT 114 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999887754
No 69
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=65.67 Aligned_cols=59 Identities=25% Similarity=0.607 Sum_probs=48.7
Q ss_pred EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+...+ +.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+..+..
T Consensus 73 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 133 (199)
T 3l0i_B 73 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 133 (199)
T ss_dssp EEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3444444 7899999999999999999999999999999999999999999999887754
No 70
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.34 E-value=4.1e-12 Score=63.88 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=48.5
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..+++.++++++|+|+++++++..+..|+.++.+
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 117 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR 117 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999998887764
No 71
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.34 E-value=3.9e-12 Score=64.97 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=48.6
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..+++.++++++|||++++++|..+..|+..+.+
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 113 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR 113 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999888764
No 72
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.33 E-value=1.5e-11 Score=62.37 Aligned_cols=53 Identities=19% Similarity=0.549 Sum_probs=48.6
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..+++.++++++|+|++++++++.+..|+..+.+
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 122 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988887654
No 73
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.33 E-value=3.7e-12 Score=63.65 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=48.4
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|+++..+++.+..|+..+..
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988877653
No 74
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.33 E-value=1.5e-11 Score=62.33 Aligned_cols=52 Identities=21% Similarity=0.488 Sum_probs=48.5
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+.+||++|++.+...+..+++.++++++|+|++++.++..+..|+.++..
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~ 144 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI 144 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999998887764
No 75
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.33 E-value=4.4e-12 Score=63.91 Aligned_cols=53 Identities=13% Similarity=0.325 Sum_probs=45.7
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..+++.++++++|+|++++++|..+..|+..+.+
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR 103 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999887765
No 76
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.33 E-value=3.5e-12 Score=65.40 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=48.1
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..++++++++++|+|++++.+++.+..|+..+..
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 125 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART 125 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999887753
No 77
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.32 E-value=2.7e-11 Score=60.07 Aligned_cols=52 Identities=19% Similarity=0.473 Sum_probs=47.9
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+.+||++|.+.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~ 106 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 106 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999888877653
No 78
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.32 E-value=6.5e-12 Score=62.89 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=39.3
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|++++.+++.+..|+.++..
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999998887754
No 79
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.31 E-value=2.3e-11 Score=61.73 Aligned_cols=53 Identities=17% Similarity=0.454 Sum_probs=48.9
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~ 125 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD 125 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHT
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999888754
No 80
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.31 E-value=3.9e-12 Score=63.99 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=46.5
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML 61 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~ 61 (65)
..+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+.
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 104 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999987 5665554
No 81
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=1.3e-12 Score=66.46 Aligned_cols=54 Identities=20% Similarity=0.544 Sum_probs=49.9
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+..+..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 123 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999998887754
No 82
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.30 E-value=7.6e-12 Score=62.08 Aligned_cols=53 Identities=21% Similarity=0.565 Sum_probs=48.5
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+.+
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 103 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE 103 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999988887654
No 83
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.30 E-value=5.5e-12 Score=64.04 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=43.6
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
.+.+.+||++|++.++ ++++++++++|||++++++|+++..|+.++...
T Consensus 66 ~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 114 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF 114 (184)
T ss_dssp EEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 3788899999998876 788999999999999999999999999887653
No 84
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.30 E-value=1.4e-11 Score=62.13 Aligned_cols=53 Identities=19% Similarity=0.566 Sum_probs=49.0
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 121 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999887764
No 85
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=6.3e-12 Score=62.39 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=47.6
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..+++.++++++|+|++++++++++..|+..+.+
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~ 102 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 102 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999988888776643
No 86
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.30 E-value=3e-12 Score=63.64 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=42.2
Q ss_pred CEEEEEEECCCCcCchh-hHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+.. .+..++++++++++|||++++++|+.+..|+.++.+
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 103 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHh
Confidence 46788999999998876 788889999999999999999999999999988765
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.29 E-value=4e-12 Score=65.89 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=49.4
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
..+.+.+||++|++.+...+..++++++++++|+|+++..+|..+..|+..+.+
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 115 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999888764
No 88
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.29 E-value=3.6e-12 Score=63.16 Aligned_cols=53 Identities=17% Similarity=0.513 Sum_probs=48.4
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++.+...+..++++++++++|+|++++++++.+..|+..+..
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 105 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA 105 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999888887754
No 89
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.29 E-value=1e-11 Score=63.88 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=46.7
Q ss_pred ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770 8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML 61 (65)
Q Consensus 8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~ 61 (65)
...+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 129 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999997 5555543
No 90
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.29 E-value=4.1e-12 Score=65.56 Aligned_cols=53 Identities=19% Similarity=0.597 Sum_probs=48.9
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..+++.++++++|+|+++..++..+..|+..+..
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~ 135 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 135 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999887653
No 91
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.28 E-value=1.4e-11 Score=62.96 Aligned_cols=53 Identities=15% Similarity=0.376 Sum_probs=48.3
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++.+|..+..|+.++..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 108 (207)
T 1vg8_A 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI 108 (207)
T ss_dssp EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999888887653
No 92
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.28 E-value=3.6e-12 Score=65.98 Aligned_cols=52 Identities=15% Similarity=0.329 Sum_probs=31.9
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~ 61 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++++|.++. .|+..+.
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 133 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999987 5666553
No 93
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.28 E-value=1.3e-11 Score=60.75 Aligned_cols=53 Identities=13% Similarity=0.328 Sum_probs=48.0
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++.+...+..++..++++++|+|++++.++.++..|+..+.+
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~ 102 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR 102 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999888877654
No 94
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=9.5e-12 Score=63.43 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=46.7
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|++. ...+..+++.++++++|+|++++++|+++..|+..+.+
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 126 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE 126 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 47799999999988 78889999999999999999999999999888877654
No 95
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.27 E-value=7.6e-12 Score=64.11 Aligned_cols=51 Identities=14% Similarity=0.347 Sum_probs=45.2
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRM 60 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~ 60 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 123 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV 123 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999998 4555544
No 96
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=1.3e-11 Score=63.49 Aligned_cols=52 Identities=13% Similarity=0.352 Sum_probs=45.8
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~ 61 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 124 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999998 55655543
No 97
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=9.2e-12 Score=63.29 Aligned_cols=52 Identities=12% Similarity=0.214 Sum_probs=46.7
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
.+.+.+||++|++.+...+..++..++++++|+|++++++|.++..|+..+.
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 106 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHH
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999998887776553
No 98
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.25 E-value=1.6e-11 Score=61.52 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=39.5
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
.+.+.+||++|++. ..++++++++++|||++++++|.++..|++.+
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i 98 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQL 98 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 46789999999987 46888999999999999999999998865443
No 99
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=60.90 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=42.3
Q ss_pred CEEEEEEECCCCcC--chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDK--IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~--~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|++. +...+..+++.++++++|||++++++|+.+..|+..+.+
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~ 105 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRR 105 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36789999999988 566778899999999999999999999999988887754
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.25 E-value=4.7e-11 Score=64.99 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=44.6
Q ss_pred CCEEEEEEECCCCcCc-----hhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHH
Q 037770 9 KNISFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~ 58 (65)
+.+.+.+||++|++.+ ...+..++++++++++|+|++++++|+++..|..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~ 104 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAK 104 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHH
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHH
Confidence 4689999999999988 6788999999999999999999999999876644
No 101
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.23 E-value=2e-11 Score=61.80 Aligned_cols=52 Identities=13% Similarity=0.311 Sum_probs=37.0
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..+++.++++++|+|+++..++.++..|+..+..
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 120 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKR 120 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999888877653
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.22 E-value=4.4e-11 Score=61.05 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=45.3
Q ss_pred ECCEEEEEEECCCCcCchhhH---HhhhhCCcEEEEEEECCCh--hhHHHHHHHHHHH
Q 037770 8 YKNISFTVWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDR--DRIVEARDELHRM 60 (65)
Q Consensus 8 ~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~ii~v~d~~~~--~sf~~~~~~~~~~ 60 (65)
...+.+.+||++|++.+.... ..++++++++++|||+++. +++..+..|+.++
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~ 123 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA 123 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHH
Confidence 355889999999999986655 8999999999999999987 7777777887765
No 103
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.21 E-value=4.1e-11 Score=61.86 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=47.9
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
+.+.+||++|++.+...+..++.+++++++|+|+++..++.++..|+..+..
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 112 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQA 112 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999888877653
No 104
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.16 E-value=5.3e-11 Score=64.50 Aligned_cols=52 Identities=12% Similarity=0.228 Sum_probs=45.4
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~ 61 (65)
.+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 254 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 366779999999999999999999999999999999999999987 4555543
No 105
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=5.2e-11 Score=62.02 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=45.5
Q ss_pred CEEEEEEECCCCcC-chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.+.+.+||++|+.. .+.+...+++.++++++|||++++++|+++..|+..+.+
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~ 139 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR 139 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46778999999877 566778889999999999999999999999998877653
No 106
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.16 E-value=6.3e-11 Score=60.51 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=42.7
Q ss_pred CEEEEEEECCCCcC-chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 10 NISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
.+.+.+||+.|+.. .+.++..+++.++++++|||++++++|+++..|+..+.
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~ 107 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR 107 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 46778999999876 55677889999999999999999999999988877664
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.15 E-value=2.2e-10 Score=58.96 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=44.5
Q ss_pred CEEEEEEECCCCcCchh-hHHhhhhCCcEEEEEEECCChh-hHHHHHHHHHHHh
Q 037770 10 NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRD-RIVEARDELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~~ 61 (65)
...+.+||++|++.+.. .+..++++++++++|+|+++.+ ++..+.+++.+++
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 106 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVL 106 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHH
Confidence 67899999999999988 8899999999999999999864 4777777766654
No 108
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.13 E-value=2.2e-11 Score=61.68 Aligned_cols=54 Identities=15% Similarity=0.351 Sum_probs=46.7
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh-hhHHHHHHHHHHHhc
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR-DRIVEARDELHRMLN 62 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~-~sf~~~~~~~~~~~~ 62 (65)
..+.+.+||++|++.+...++.++++++++++|+|++++ .+|..+..|+.++..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~ 108 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKA 108 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHH
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999987 579999999887653
No 109
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.71 E-value=6.7e-12 Score=64.32 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=46.7
Q ss_pred EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHH
Q 037770 7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRM 60 (65)
Q Consensus 7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~ 60 (65)
+...+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l 128 (204)
T 3th5_A 74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128 (204)
Confidence 445577889999999999999999999999999999999999999887 555544
No 110
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.05 E-value=1.6e-09 Score=55.39 Aligned_cols=57 Identities=19% Similarity=0.423 Sum_probs=48.2
Q ss_pred EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
++...+ +.+.+||++|++.++..+..+++.++++++|+|+++..++.++..|+..+.
T Consensus 46 ~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (199)
T 2f9l_A 46 SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104 (199)
T ss_dssp EEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 344443 678899999999999899999999999999999999999998888876653
No 111
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.03 E-value=3.2e-10 Score=58.51 Aligned_cols=52 Identities=31% Similarity=0.503 Sum_probs=46.7
Q ss_pred EEEEEEECCCCcCchhhHHhhhhC----CcEEEEEEECC-ChhhHHHHHHHHHHHhc
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQN----TQGLIFVVDSN-DRDRIVEARDELHRMLN 62 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~----~~~ii~v~d~~-~~~sf~~~~~~~~~~~~ 62 (65)
..+.+||++|++.++..+..+++. ++++++|+|++ ++++|..+.+|+.++++
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~ 111 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 111 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHh
Confidence 468899999999999999999987 89999999999 88999999999888764
No 112
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=61.93 Aligned_cols=57 Identities=7% Similarity=0.137 Sum_probs=43.3
Q ss_pred EEECCEEEEEEE-----------------------CCCCcCchhhHHhhhh---------------------CCcEEEEE
Q 037770 6 VEYKNISFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFV 41 (65)
Q Consensus 6 ~~~~~~~l~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~ii~v 41 (65)
+++..+.+++|| ++|++++...+..+++ +++++++|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 455678899999 7788888888888887 79999999
Q ss_pred EECCCh--hhHHHHHHHHHHHhc
Q 037770 42 VDSNDR--DRIVEARDELHRMLN 62 (65)
Q Consensus 42 ~d~~~~--~sf~~~~~~~~~~~~ 62 (65)
||++++ ++|+.+..|+.++.+
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~ 192 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYN 192 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHH
Confidence 999998 999999999888764
No 113
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.3e-10 Score=57.38 Aligned_cols=53 Identities=30% Similarity=0.496 Sum_probs=46.4
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhC----CcEEEEEEECC-ChhhHHHHHHHHHHHhc
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQN----TQGLIFVVDSN-DRDRIVEARDELHRMLN 62 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~----~~~ii~v~d~~-~~~sf~~~~~~~~~~~~ 62 (65)
...+.+||++|+..+...+..++.. ++++++|+|++ +.+++.++..|+.++++
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 147 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 147 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHh
Confidence 4567899999999998888888877 89999999999 89999999888887764
No 114
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.91 E-value=3.2e-09 Score=52.98 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=41.7
Q ss_pred EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA 53 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~ 53 (65)
..+...+..+.+||++|++.+...+..++..++++++|+|+++ .++++.+
T Consensus 48 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l 100 (178)
T 2lkc_A 48 YQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI 100 (178)
T ss_dssp CEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH
T ss_pred EEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 3456677889999999999999999999999999999999988 5555443
No 115
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.91 E-value=3.9e-10 Score=59.28 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=26.7
Q ss_pred ECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770 17 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL 57 (65)
Q Consensus 17 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~ 57 (65)
+.+|+.+++.+|..||.+.+|+|||+|++|.+.++ +++.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL 147 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEF 147 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHH
Confidence 45699999999999999999999999999987654 55555
No 116
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.87 E-value=1.9e-08 Score=51.19 Aligned_cols=58 Identities=17% Similarity=0.401 Sum_probs=48.1
Q ss_pred EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
.++...+ +.+.+||++|.+++...+..+++.++++++|+|+++..+|+++..|+..+.
T Consensus 69 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 128 (191)
T 1oix_A 69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128 (191)
T ss_dssp EEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 3444443 567789999999999999999999999999999999999988888876553
No 117
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.77 E-value=2.5e-07 Score=45.93 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=39.4
Q ss_pred EEEEECCEEEEEEECCCCcCch------hhHHhhhh--CCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 4 ETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--NTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
..+...+..+.+||++|+..+. .....+++ +++++++|+|.++.++. ..|+.++
T Consensus 43 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~---~~~~~~~ 104 (165)
T 2wji_A 43 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERN---LYLTLQL 104 (165)
T ss_dssp EEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHH---HHHHHHH
T ss_pred EEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHh---HHHHHHH
Confidence 3455567889999999998874 34466665 89999999999986543 3454444
No 118
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=8.2e-09 Score=56.15 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=43.0
Q ss_pred EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh-hHHHHHHHHHHHh
Q 037770 12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RIVEARDELHRML 61 (65)
Q Consensus 12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~~ 61 (65)
.+.+||+ +++++.+++.|+++++++++|+|+++++ +++.+..|+..+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~ 112 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAE 112 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 6889999 8999999999999999999999999987 6888888887653
No 119
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.75 E-value=1.9e-09 Score=58.98 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=30.8
Q ss_pred ECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770 17 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE 56 (65)
Q Consensus 17 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~ 56 (65)
+.+||.+.+.+|..||.+.+|+|||+|++|+++++ +++.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~E 231 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDE 231 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHH
Confidence 36899999999999999999999999999988754 4443
No 120
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.73 E-value=8.5e-09 Score=58.44 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=42.2
Q ss_pred EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR 54 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~ 54 (65)
.+...+..+.+||++|+..+...+..++..++++|+|+|.++ .+|+.+.
T Consensus 78 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~ 126 (435)
T 1jny_A 78 RFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM 126 (435)
T ss_dssp EEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH
T ss_pred EEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc
Confidence 345567889999999999999999999999999999999998 7777544
No 121
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.71 E-value=7.4e-08 Score=47.21 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=36.8
Q ss_pred EEEEECCEEEEEEECCCCcC-------chhhHHhhhhCCcEEEEEEECCChhh
Q 037770 4 ETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGLIFVVDSNDRDR 49 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~~~s 49 (65)
..+...+..+.+||++|... +...+..+++.++++++|+|+++..+
T Consensus 42 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 94 (161)
T 2dyk_A 42 GVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT 94 (161)
T ss_dssp EEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC
T ss_pred EEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc
Confidence 34555677899999999987 45566778999999999999998544
No 122
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.70 E-value=7e-08 Score=48.39 Aligned_cols=57 Identities=12% Similarity=0.264 Sum_probs=40.5
Q ss_pred EEEEECCEEEEEEECCCCcCchhh--------HHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
..+...+..+.+||++|+...... ...+++.++++++|+|+++..++.. ..|+..+.
T Consensus 45 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~ 109 (172)
T 2gj8_A 45 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFI 109 (172)
T ss_dssp EEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHH
T ss_pred EEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH
Confidence 445566778999999998753211 1246889999999999999888753 45555543
No 123
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.67 E-value=2.8e-07 Score=47.96 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=38.8
Q ss_pred EEECCEEEEEEECCCC------cCc---hhhHHhhhhCCcEEEEEEECCChhhHH--HHHHHHHHHh
Q 037770 6 VEYKNISFTVWDVGGQ------DKI---RPLWRHYFQNTQGLIFVVDSNDRDRIV--EARDELHRML 61 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~------~~~---~~~~~~~~~~~~~ii~v~d~~~~~sf~--~~~~~~~~~~ 61 (65)
+......+.+||++|+ +.. ...+..++..++++++|+|++++.+|. ....++..+.
T Consensus 71 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~ 137 (228)
T 2qu8_A 71 FDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK 137 (228)
T ss_dssp EEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHH
T ss_pred eecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHH
Confidence 3446688999999998 331 122345678889999999999988764 2335555543
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.62 E-value=1.8e-07 Score=49.95 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=41.9
Q ss_pred EEEEECCEEEEEEECCCCcCchh----------hHHhhh--hCCcEEEEEEECCChhhHHHHHHHHH
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRP----------LWRHYF--QNTQGLIFVVDSNDRDRIVEARDELH 58 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~----------~~~~~~--~~~~~ii~v~d~~~~~sf~~~~~~~~ 58 (65)
..+...+..+.+||++|..++.. .+..++ .+++++++|+|.++.+++..+..++.
T Consensus 41 ~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~ 107 (256)
T 3iby_A 41 GEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF 107 (256)
T ss_dssp EEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHT
T ss_pred EEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHH
Confidence 34555678899999999987764 456677 88999999999999877666555544
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.62 E-value=3.8e-07 Score=45.84 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=40.4
Q ss_pred EEEEECCEEEEEEECCCCcCch------hhHHhhhh--CCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 4 ETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--NTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
..+...+..+.+||++|+..+. ..+..++. .++++++|+|.++. +....|+.++.
T Consensus 47 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~ 109 (188)
T 2wjg_A 47 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLM 109 (188)
T ss_dssp EEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---HHHHHHHHHHH
T ss_pred EEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---HHHHHHHHHHH
Confidence 3456677899999999998874 45666775 48999999998764 44555665554
No 126
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.57 E-value=7.4e-07 Score=48.61 Aligned_cols=56 Identities=9% Similarity=0.130 Sum_probs=44.1
Q ss_pred EEEC-CEEEEEEECCCCcCch----------hhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 6 VEYK-NISFTVWDVGGQDKIR----------PLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 6 ~~~~-~~~l~~~d~~g~~~~~----------~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+... +..+.+||++|..... ..+..+++.++++++|+|+++..++.+...|+..+.
T Consensus 53 ~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~ 119 (308)
T 3iev_A 53 KNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK 119 (308)
T ss_dssp EEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTG
T ss_pred EecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHH
Confidence 3445 7899999999986544 566788999999999999998888777666565543
No 127
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.52 E-value=7.8e-07 Score=51.77 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=43.5
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA 53 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~ 53 (65)
...+...+..+.+||++|+..+...+..+++.++++++|+|.++..+....
T Consensus 74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~ 124 (528)
T 3tr5_A 74 VMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI 124 (528)
T ss_dssp EEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH
T ss_pred EEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH
Confidence 345677889999999999999999999999999999999999976554443
No 128
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.49 E-value=1.5e-06 Score=46.44 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=36.4
Q ss_pred EEEECCEEEEEEECCCCcCchhh------HHhhh--hCCcEEEEEEECCChhhHH
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVVDSNDRDRIV 51 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~------~~~~~--~~~~~ii~v~d~~~~~sf~ 51 (65)
.+...+..+.+||++|..++... ...++ ..++++++|+|.++.++..
T Consensus 46 ~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~ 100 (258)
T 3a1s_A 46 VFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL 100 (258)
T ss_dssp EEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH
T ss_pred EEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH
Confidence 45566789999999999887653 24555 4899999999999876643
No 129
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.45 E-value=4.1e-07 Score=52.69 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=40.2
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
...+.+||++|++.+...+..++++++++++|+|+++.+. ...|+.++
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~---~~~~~~~l 144 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHI 144 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGG---HHHHHHHH
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchh---HHHHHHHH
Confidence 5789999999999999999999999999999999987654 44455444
No 130
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.44 E-value=1.7e-06 Score=49.06 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=37.1
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
+......+.+||++|++.+...+..++..++++++|+|+++.
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 444667899999999999998888899999999999999874
No 131
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.44 E-value=2.9e-06 Score=46.27 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=36.0
Q ss_pred EEECCEEEEEEECCCCcC--------chhhHHhhhhCCcEEEEEEECCChhhH
Q 037770 6 VEYKNISFTVWDVGGQDK--------IRPLWRHYFQNTQGLIFVVDSNDRDRI 50 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~sf 50 (65)
+...+..+.+|||+|... +......+++.++++++|+|+++..+.
T Consensus 50 ~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~ 102 (301)
T 1wf3_A 50 LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTP 102 (301)
T ss_dssp EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCH
T ss_pred EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCCh
Confidence 345678999999999876 445566788999999999999876443
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.42 E-value=9.4e-07 Score=49.70 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=41.6
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHH
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHR 59 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~ 59 (65)
..+.+||++|++.+......++..++++++|+|.++..++.+..+++..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~ 123 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA 123 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHH
Confidence 6889999999999999999999999999999999986655566555543
No 133
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.41 E-value=1.1e-06 Score=46.88 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=34.0
Q ss_pred EEEEECCEEEEEEECCCCcCchhhHHhhhh---------CCcEEEEEEECCChh
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---------NTQGLIFVVDSNDRD 48 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~---------~~~~ii~v~d~~~~~ 48 (65)
..+...+..+.+||++|+..+......+++ +++++++|++++...
T Consensus 77 ~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~ 130 (262)
T 3def_A 77 VSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA 130 (262)
T ss_dssp EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC
T ss_pred EEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC
Confidence 345667789999999999877655444443 789999999887643
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.41 E-value=3.8e-06 Score=47.72 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=36.5
Q ss_pred EEEEECCEEEEEEECCCCcC---------chhhHHhhhhCCcEEEEEEECCChhhH
Q 037770 4 ETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNTQGLIFVVDSNDRDRI 50 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~sf 50 (65)
..+...+..+.+|||+|... ++..+..+++.++++++|+|.++..+.
T Consensus 42 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~ 97 (439)
T 1mky_A 42 DTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITK 97 (439)
T ss_dssp EEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCH
T ss_pred EEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH
Confidence 34555677899999999765 345667899999999999999865443
No 135
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.41 E-value=2.6e-06 Score=45.77 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=38.8
Q ss_pred EEECCEEEEEEECCCCcCch----------hhHHhhh--hCCcEEEEEEECCChhhHHHHHHHHHH
Q 037770 6 VEYKNISFTVWDVGGQDKIR----------PLWRHYF--QNTQGLIFVVDSNDRDRIVEARDELHR 59 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~----------~~~~~~~--~~~~~ii~v~d~~~~~sf~~~~~~~~~ 59 (65)
+...+..+.+||++|...+. ..+..++ ..++++++|+|.++.++......++.+
T Consensus 45 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~ 110 (274)
T 3i8s_A 45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE 110 (274)
T ss_dssp EECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred EEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh
Confidence 44456788999999988766 2233343 689999999999987776555555443
No 136
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.39 E-value=9.6e-07 Score=50.71 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=38.0
Q ss_pred EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
.++.....+.+||++|++.+......++..++++++|+|+++..
T Consensus 105 ~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~ 148 (483)
T 3p26_A 105 HFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA 148 (483)
T ss_dssp EEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC--
T ss_pred EEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence 34556788999999999999999999999999999999998854
No 137
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.39 E-value=4.3e-07 Score=45.84 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=35.1
Q ss_pred EEEEEECCC----------CcCchhhHHhhhhCC---cEEEEEEECCChhhHHHH
Q 037770 12 SFTVWDVGG----------QDKIRPLWRHYFQNT---QGLIFVVDSNDRDRIVEA 53 (65)
Q Consensus 12 ~l~~~d~~g----------~~~~~~~~~~~~~~~---~~ii~v~d~~~~~sf~~~ 53 (65)
.+.+||++| ++.+...+..+++.+ +++++|+|+++..++.+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV 124 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH
Confidence 578999999 677777888888877 999999999987776554
No 138
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.38 E-value=8.5e-07 Score=53.93 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=41.1
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE 56 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~ 56 (65)
+..+.+||++|+..+...+..+++.++++|+|+|+++..++.....|
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~ 143 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL 143 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 67899999999999999999999999999999999987776655433
No 139
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.37 E-value=7.5e-07 Score=52.49 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=38.6
Q ss_pred EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHHH
Q 037770 12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEAR 54 (65)
Q Consensus 12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~~ 54 (65)
.+.+|||+|+..+...+..+++.++++++|+|+++ +++++.+.
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~ 116 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN 116 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH
Confidence 58999999999999999989999999999999998 77776654
No 140
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.35 E-value=2.2e-06 Score=48.24 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=41.1
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHH
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~ 58 (65)
+......+.+||++|++.+......++..+|++++|+|.++... .+..+++.
T Consensus 70 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~ 121 (405)
T 2c78_A 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHIL 121 (405)
T ss_dssp EECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHH
T ss_pred eccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHH
Confidence 44556889999999999998888889999999999999987543 33444443
No 141
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.35 E-value=8.1e-07 Score=51.16 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=29.9
Q ss_pred EEEEECCEEEEEEECCCCcCchhhH--------HhhhhCCcEEEEEEECCChhhHH
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRPLW--------RHYFQNTQGLIFVVDSNDRDRIV 51 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~~~--------~~~~~~~~~ii~v~d~~~~~sf~ 51 (65)
..+...+..+.+|||+|...+...+ ..+++.++++++|+|.+++.++.
T Consensus 274 ~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~ 329 (476)
T 3gee_A 274 ECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDD 329 (476)
T ss_dssp EEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGG
T ss_pred EEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchh
Confidence 3456677899999999987765433 34788999999999999887764
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.35 E-value=1.3e-06 Score=51.64 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=40.0
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL 57 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~ 57 (65)
...+.+||++|+..+...+..+++.++++++|+|.++..++.....|.
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~ 117 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999999999999999999998765554444443
No 143
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.34 E-value=3.4e-06 Score=44.21 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=33.2
Q ss_pred EEEECCEEEEEEECCCCc-----------CchhhHHhhhhCCcEEEEEEECCChh
Q 037770 5 TVEYKNISFTVWDVGGQD-----------KIRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~-----------~~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
.+...+..+.+||++|.. .+...+..++++++++++|+|+++..
T Consensus 72 ~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~ 126 (239)
T 3lxx_A 72 SSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT 126 (239)
T ss_dssp EEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS
T ss_pred EEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC
Confidence 455667889999999943 34555566777889999999987543
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.34 E-value=2.1e-06 Score=50.77 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=40.4
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL 57 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~ 57 (65)
...+.+||++|+..+...+..++..++++++|+|.++..++.....|.
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~ 119 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHH
Confidence 378899999999999998999999999999999999876655554443
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.31 E-value=3.8e-06 Score=47.85 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=37.3
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
+...+..+.+||++|++.+......++..+|++++|+|.++.
T Consensus 90 ~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 90 FETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 445667899999999999999999999999999999999864
No 146
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.31 E-value=4.8e-06 Score=49.80 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=43.3
Q ss_pred EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD 55 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~ 55 (65)
.++...+..+.+||++|+..+...+..+++.++++++|+|.++..++.....
T Consensus 70 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~ 121 (691)
T 1dar_A 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121 (691)
T ss_dssp EEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred EEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH
Confidence 3455567889999999999999999999999999999999998766554433
No 147
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.30 E-value=3.9e-06 Score=48.89 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=38.8
Q ss_pred EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
..+...+..+.+||++|+..+......+++.++++++|+|.++.
T Consensus 75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 75 MQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp EEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred EEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc
Confidence 34566788999999999999988888899999999999999864
No 148
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.29 E-value=2.5e-06 Score=47.77 Aligned_cols=51 Identities=4% Similarity=-0.061 Sum_probs=39.1
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHH
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~ 58 (65)
+...+..+.+||++|++.+.......++.++++++|+| + ...+.+.++++.
T Consensus 55 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~ 105 (370)
T 2elf_A 55 NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECII 105 (370)
T ss_dssp ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHH
T ss_pred EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHH
Confidence 44456789999999999998877788899999999999 4 344445555444
No 149
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.29 E-value=2.4e-06 Score=47.48 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=41.7
Q ss_pred EEEECC-EEEEEEECCCCc----CchhhHHhhhh---CCcEEEEEEECCC---hhhHHHHHHHHHHHhc
Q 037770 5 TVEYKN-ISFTVWDVGGQD----KIRPLWRHYFQ---NTQGLIFVVDSND---RDRIVEARDELHRMLN 62 (65)
Q Consensus 5 ~~~~~~-~~l~~~d~~g~~----~~~~~~~~~~~---~~~~ii~v~d~~~---~~sf~~~~~~~~~~~~ 62 (65)
.+...+ ..+.+||++|.. ....+...+++ .++++++|+|+++ +++++++..|+.++..
T Consensus 199 ~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~ 267 (342)
T 1lnz_A 199 MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE 267 (342)
T ss_dssp EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHH
Confidence 344443 689999999953 34444455554 4999999999998 7888888877777643
No 150
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.28 E-value=3.3e-06 Score=45.50 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=34.2
Q ss_pred CEEEEEEECCCCcCch------hhHHhhhh--CCcEEEEEEECCChhhHHH
Q 037770 10 NISFTVWDVGGQDKIR------PLWRHYFQ--NTQGLIFVVDSNDRDRIVE 52 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~sf~~ 52 (65)
+..+.+||++|+.++. ..+..|+. .++++++|+|+++.++...
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~ 98 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLY 98 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHH
Confidence 4578999999998875 45666776 5999999999998766533
No 151
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.28 E-value=4e-06 Score=47.97 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=38.3
Q ss_pred EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
.+......+.+||++|++.+......++..++++|+|+|.++.
T Consensus 79 ~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 79 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 4566778999999999999999888999999999999999864
No 152
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.28 E-value=7.7e-06 Score=43.71 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=35.9
Q ss_pred EEEECCEEEEEEECCCCcCchh------hHHhhh--hCCcEEEEEEECCChhh
Q 037770 5 TVEYKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRDR 49 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s 49 (65)
.+...+..+.+||++|...+.. .+..++ .+++++++|+|.++.++
T Consensus 44 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~ 96 (271)
T 3k53_A 44 IMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR 96 (271)
T ss_dssp EEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH
T ss_pred EEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh
Confidence 4555677899999999988765 566666 68999999999988643
No 153
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.27 E-value=3.2e-07 Score=46.03 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=35.2
Q ss_pred EEEEEECCC-----------CcCchhhHHhhhhC-CcEEEEEEECCChhhHHHH
Q 037770 12 SFTVWDVGG-----------QDKIRPLWRHYFQN-TQGLIFVVDSNDRDRIVEA 53 (65)
Q Consensus 12 ~l~~~d~~g-----------~~~~~~~~~~~~~~-~~~ii~v~d~~~~~sf~~~ 53 (65)
.+.+||++| ++.+...+..++++ ++++++|+++.+..++.++
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~ 98 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI 98 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhH
Confidence 578999999 66677788888887 8888888888888888776
No 154
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.26 E-value=5e-07 Score=51.77 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=26.5
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
+...+..+.+||++|++.|......++..++++|+|+|.++.
T Consensus 116 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 116 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 334567899999999999998888889999999999999874
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.24 E-value=2.1e-05 Score=41.60 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=37.3
Q ss_pred EEEECCEEEEEEECCCCcCch-----------hhHHhhhhCCcEEEEEEECCChhhH-HHHHHHHHHH
Q 037770 5 TVEYKNISFTVWDVGGQDKIR-----------PLWRHYFQNTQGLIFVVDSNDRDRI-VEARDELHRM 60 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~-----------~~~~~~~~~~~~ii~v~d~~~~~sf-~~~~~~~~~~ 60 (65)
.+...+..+.+||++|..... .....++++++++++|+|+++.... ..+.+++.++
T Consensus 65 ~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~ 132 (260)
T 2xtp_A 65 QGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEI 132 (260)
T ss_dssp EEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 445567889999999976542 2223477899999999999863322 2333455443
No 156
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.20 E-value=1.1e-05 Score=48.29 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=41.6
Q ss_pred EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA 53 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~ 53 (65)
.+...+..+.+||++|+..+...+..+++.++++++|+|.++..++...
T Consensus 69 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~ 117 (693)
T 2xex_A 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE 117 (693)
T ss_dssp EEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH
T ss_pred EEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH
Confidence 3555678899999999999998889999999999999999886655444
No 157
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.19 E-value=1e-05 Score=46.71 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=39.0
Q ss_pred EEEEECCEEEEEEECCCCc-Cch--------hhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770 4 ETVEYKNISFTVWDVGGQD-KIR--------PLWRHYFQNTQGLIFVVDSNDRDRIVEA 53 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~-~~~--------~~~~~~~~~~~~ii~v~d~~~~~sf~~~ 53 (65)
..+...+..+.+||++|.. ... .....+++.++++++|+|++++.++++.
T Consensus 284 ~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~ 342 (482)
T 1xzp_A 284 EEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR 342 (482)
T ss_dssp EEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH
T ss_pred EEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH
Confidence 4566678899999999987 543 2234688999999999999988776553
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.4e-06 Score=49.03 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=37.6
Q ss_pred EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
.+......+.+||++|++.+......+++.++++|+|+|+++
T Consensus 239 ~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 239 HFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred EEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 355567789999999999999999999999999999999986
No 159
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=3.9e-05 Score=42.58 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=41.1
Q ss_pred EEEECCEEEEEEECCCCcCch---------hhHHhhhhCCcEEEEEEECCChh--hHHHHHHHHHHHhc
Q 037770 5 TVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQGLIFVVDSNDRD--RIVEARDELHRMLN 62 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~~~--sf~~~~~~~~~~~~ 62 (65)
.+......+.+||++|..... .........++++++|+|+++.. ++.+...++..+..
T Consensus 208 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 208 QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp EEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred EEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 344566789999999985532 12223455789999999999877 67777777776653
No 160
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.13 E-value=5.2e-06 Score=47.85 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=39.5
Q ss_pred EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770 7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA 53 (65)
Q Consensus 7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~ 53 (65)
...+..+.+||++|++.+.......+..+|++++|+|.++ +++++.+
T Consensus 69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l 118 (482)
T 1wb1_A 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM 118 (482)
T ss_dssp EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH
T ss_pred EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH
Confidence 3456789999999999998888889999999999999987 5555544
No 161
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.13 E-value=1.6e-05 Score=47.69 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=36.0
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI 50 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf 50 (65)
..+.+||++|+..+...+..+++.+|++|+|+|.++..+.
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~ 121 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP 121 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcH
Confidence 8899999999999988889999999999999999875443
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.11 E-value=6.1e-06 Score=46.38 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=36.3
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
+......+.+||++|++.+......++..++++++|+|.++.
T Consensus 61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC
T ss_pred eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 344567899999999999888888889999999999999873
No 163
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.09 E-value=1.7e-06 Score=49.05 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCEEEEEEECCCCc--------CchhhHHhhhhCCcEEEEEEECCChhhHH
Q 037770 9 KNISFTVWDVGGQD--------KIRPLWRHYFQNTQGLIFVVDSNDRDRIV 51 (65)
Q Consensus 9 ~~~~l~~~d~~g~~--------~~~~~~~~~~~~~~~ii~v~d~~~~~sf~ 51 (65)
.+..+.+||++|.. .+...+..+++.++++++|+|.++..++.
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~ 99 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA 99 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH
Confidence 34578999999986 56677788999999999999998765543
No 164
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.08 E-value=2.2e-05 Score=44.73 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=35.1
Q ss_pred EEECC-EEEEEEECCCCcCchhh-------HHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770 6 VEYKN-ISFTVWDVGGQDKIRPL-------WRHYFQNTQGLIFVVDSNDRDRIVEARDE 56 (65)
Q Consensus 6 ~~~~~-~~l~~~d~~g~~~~~~~-------~~~~~~~~~~ii~v~d~~~~~sf~~~~~~ 56 (65)
+...+ ..+.+||++|+..+... +..++..++++++|+|.+..+......++
T Consensus 77 ~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~ 135 (423)
T 3qq5_A 77 MELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNL 135 (423)
T ss_dssp EEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHH
T ss_pred EEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHH
Confidence 33333 38999999999876543 45588899999999999544443333333
No 165
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.05 E-value=0.00011 Score=38.92 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=30.9
Q ss_pred EEEEECCEEEEEEECCCC--------cCchhhHHhhh----hCCcEEEEEEECCCh
Q 037770 4 ETVEYKNISFTVWDVGGQ--------DKIRPLWRHYF----QNTQGLIFVVDSNDR 47 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~--------~~~~~~~~~~~----~~~~~ii~v~d~~~~ 47 (65)
..+...+..+.+||++|. +.+......++ ++++++++|+|+++.
T Consensus 63 ~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~ 118 (247)
T 3lxw_A 63 GSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRF 118 (247)
T ss_dssp EEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBC
T ss_pred EEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC
Confidence 345567788999999996 33322222333 899999999999853
No 166
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.04 E-value=3.3e-06 Score=47.95 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=40.0
Q ss_pred EEEECCEEEEEEECCCC----------cCchhhHH-hhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 5 TVEYKNISFTVWDVGGQ----------DKIRPLWR-HYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~----------~~~~~~~~-~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
.+...+..+.+||++|+ +.+...+. .+++.++++++|+|+++..++.+. +++..+
T Consensus 217 ~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~ 282 (436)
T 2hjg_A 217 SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYA 282 (436)
T ss_dssp EEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHH
T ss_pred EEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHH
Confidence 34556678999999998 34444443 478899999999999988777665 455444
No 167
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.02 E-value=1.1e-05 Score=45.45 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=35.5
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----hhhHHHHH
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----RDRIVEAR 54 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~sf~~~~ 54 (65)
..+.+||++|++.+..........+|++++|+|.++ +++++++.
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~ 128 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM 128 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH
Confidence 679999999999888777667777899999999984 55565554
No 168
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.98 E-value=1.3e-05 Score=40.23 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=35.4
Q ss_pred EEEEEEECCC----------CcCchhhHHhhhhCC---cEEEEEEECCChhh--HHHHHHHHHH
Q 037770 11 ISFTVWDVGG----------QDKIRPLWRHYFQNT---QGLIFVVDSNDRDR--IVEARDELHR 59 (65)
Q Consensus 11 ~~l~~~d~~g----------~~~~~~~~~~~~~~~---~~ii~v~d~~~~~s--f~~~~~~~~~ 59 (65)
..+.+||++| ++.+...+..+++.+ +++++|+|.++..+ ...+.+|+..
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 131 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS 131 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 3577999999 666777888888876 89999999886533 3344445443
No 169
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.94 E-value=3.5e-05 Score=41.16 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=30.1
Q ss_pred EEEECCEEEEEEECCCCcCchhhHH-------hh--hhCCcEEEEEEECCC
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWR-------HY--FQNTQGLIFVVDSND 46 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~-------~~--~~~~~~ii~v~d~~~ 46 (65)
.+...+..+.+||++|...+..... .+ .++++++++|+|++.
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA 131 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCC
Confidence 3556778999999999876542211 11 347899999999865
No 170
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.93 E-value=2.3e-05 Score=44.16 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=35.0
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----hhhHHHHH
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----RDRIVEAR 54 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~sf~~~~ 54 (65)
..+.+||++|++.+..........+|++++|+|.++ +++.+++.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~ 130 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM 130 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH
Confidence 679999999998887766666778899999999984 45555543
No 171
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.91 E-value=3e-05 Score=44.63 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=31.7
Q ss_pred EEEECCEEEEEEECCCCcCchhhH--------HhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLW--------RHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~--------~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
.+...+..+.+||++|.......+ ..++..++++++|+|.+++.+... .+++..+
T Consensus 266 ~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l 328 (462)
T 3geh_A 266 QLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV 328 (462)
T ss_dssp EEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH
T ss_pred EEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc
Confidence 455677889999999986654332 236788999999999998766544 3444433
No 172
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.89 E-value=1.2e-05 Score=41.33 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=29.2
Q ss_pred CEEEEEEECCCC----------cCchhhHHhhhhC---CcEEEEEEECCChh
Q 037770 10 NISFTVWDVGGQ----------DKIRPLWRHYFQN---TQGLIFVVDSNDRD 48 (65)
Q Consensus 10 ~~~l~~~d~~g~----------~~~~~~~~~~~~~---~~~ii~v~d~~~~~ 48 (65)
...+.+||++|. +.+......+++. ++++++|+|.++..
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~ 129 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC
Confidence 467899999994 3335566677776 67799999998753
No 173
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.89 E-value=2.2e-05 Score=44.83 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=34.9
Q ss_pred EEEECCEEEEEEECCC----------CcCchhhHH-hhhhCCcEEEEEEECCChh
Q 037770 5 TVEYKNISFTVWDVGG----------QDKIRPLWR-HYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g----------~~~~~~~~~-~~~~~~~~ii~v~d~~~~~ 48 (65)
.+...+..+.+||++| ++.+...+. .+++.++++++|+|.++.-
T Consensus 237 ~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~ 291 (456)
T 4dcu_A 237 SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI 291 (456)
T ss_dssp EEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC
T ss_pred EEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc
Confidence 4556677899999999 666766655 4788999999999998743
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.88 E-value=8.3e-06 Score=47.39 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=36.9
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA 53 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~ 53 (65)
+..+.+||++|++.+...+......+|++++|+|.++ +++.+.+
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l 96 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH
Confidence 3467899999999999999889999999999999987 5555444
No 175
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.82 E-value=4.6e-06 Score=47.57 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=33.1
Q ss_pred CCEEEEEEECCC--------CcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 9 KNISFTVWDVGG--------QDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 9 ~~~~l~~~d~~g--------~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
.+..+.+||++| ++.++..+..+++.++++++|+|..+.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~ 115 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG 115 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC
Confidence 346789999999 667778889999999999999998753
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.75 E-value=0.00024 Score=42.50 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=38.5
Q ss_pred EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
.+......+.+||++|+..+...+..+++.++++++|+|.++..
T Consensus 68 ~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~ 111 (665)
T 2dy1_A 68 PLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV 111 (665)
T ss_dssp EEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred EEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc
Confidence 45567789999999999999988999999999999999987543
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.74 E-value=3.8e-05 Score=48.74 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=36.5
Q ss_pred EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
++.....+.+||++|++.+......++..++++|+|+|.++.
T Consensus 354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC
T ss_pred EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence 344567899999999999988888889999999999999874
No 178
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.73 E-value=4.2e-05 Score=43.40 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=24.8
Q ss_pred EEEEEEECCCCcCchh-------hHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770 11 ISFTVWDVGGQDKIRP-------LWRHYFQNTQGLIFVVDSNDRDRIVEA 53 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~sf~~~ 53 (65)
..+.+||++|...... .+..+++.++++++|+|+++.+++.++
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v 135 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHV 135 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---------
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence 3589999999877543 567788999999999999876665443
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.73 E-value=4.4e-05 Score=44.75 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=37.2
Q ss_pred EEEEEECCCCcC-----------chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 12 SFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 12 ~l~~~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
.+.+||++|... +...+..++..++++++|+|.++.....+...++..+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l 214 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL 214 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH
Confidence 578999999875 4466677889999999999998765445555555554
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.72 E-value=0.00045 Score=38.69 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=32.4
Q ss_pred EEEEECCEEEEEEECCCCcC---------chhhHHhhhhCCcEEEEEEECCChh
Q 037770 4 ETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 4 ~~~~~~~~~l~~~d~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
..+...+..+.+||++|... ++..+. .+..++.+++|+|++++.
T Consensus 219 ~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~ 271 (364)
T 2qtf_A 219 YAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSE 271 (364)
T ss_dssp EEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCH
T ss_pred EEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCc
Confidence 45666677889999999622 223333 567899999999998876
No 181
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.69 E-value=6.8e-06 Score=48.08 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=34.4
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
..+.+||++|++.+...+..++..++++++|+|.++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~ 89 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV 89 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc
Confidence 46889999999999999999999999999999998743
No 182
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.68 E-value=0.0003 Score=39.56 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=28.6
Q ss_pred EEEEEEECCCCcCchh-------hHHhhhhCCcEEEEEEECCC
Q 037770 11 ISFTVWDVGGQDKIRP-------LWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~ 46 (65)
..+.+||++|..+... ....+++.++++++|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999987531 22346789999999999986
No 183
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.63 E-value=0.00015 Score=38.82 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=33.0
Q ss_pred CEEEEEEECCCCc-------------CchhhHHhhhhCCcEEE-EEEECCChhhHHHHHHHHH
Q 037770 10 NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRIVEARDELH 58 (65)
Q Consensus 10 ~~~l~~~d~~g~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~sf~~~~~~~~ 58 (65)
...+.+||++|.. .+......|++.+++++ +|+|.++..+..+...++.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~ 186 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 186 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHH
Confidence 3689999999964 24456677888888777 6899986544333333433
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.55 E-value=0.00025 Score=40.14 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=23.7
Q ss_pred EEEEEEECCCCcCc----hhhHH---hhhhCCcEEEEEEECCCh
Q 037770 11 ISFTVWDVGGQDKI----RPLWR---HYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 11 ~~l~~~d~~g~~~~----~~~~~---~~~~~~~~ii~v~d~~~~ 47 (65)
..+.+||++|.... +.+.. .+++.++++++|+|+++.
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 67999999998542 22222 456899999999999875
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.47 E-value=0.00023 Score=42.80 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=35.3
Q ss_pred EEEEEECCCCcC---chhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770 12 SFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE 56 (65)
Q Consensus 12 ~l~~~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~ 56 (65)
.+.+||+||... .......+++.++++++|+|.++..+..+...+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence 588999999654 445667889999999999999987776665444
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.42 E-value=0.00024 Score=38.39 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=29.7
Q ss_pred CCEEEEEEECCCCcC-------------chhhHHhhhhCCcEEEEEEECCC
Q 037770 9 KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
....+.+||++|... +......++..++++++|+|.++
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 346799999999754 44566788899999999999753
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.34 E-value=0.00051 Score=38.10 Aligned_cols=39 Identities=21% Similarity=0.495 Sum_probs=31.9
Q ss_pred CEEEEEEECCCCcCc-------------hhhHHhhhhCCcEEEEEEECCChh
Q 037770 10 NISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
...+.+||++|.... ......|+.+++++++|++.++.+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~ 186 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD 186 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC
Confidence 457899999998776 566788999999999999876543
No 188
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.32 E-value=0.00041 Score=37.77 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=30.8
Q ss_pred EEECCEEEEEEECCCCc-C--------chhhHHhhhhCCcEEEEEEECCC
Q 037770 6 VEYKNISFTVWDVGGQD-K--------IRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 6 ~~~~~~~l~~~d~~g~~-~--------~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
+...+..+.+||++|.. . +......+++.++++++|+|.++
T Consensus 51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR 100 (301)
T ss_dssp EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC
T ss_pred EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 44567889999999987 2 22233556788999999999976
No 189
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.26 E-value=0.00026 Score=38.63 Aligned_cols=50 Identities=16% Similarity=0.015 Sum_probs=38.7
Q ss_pred EEEEEEE-C-----CCCcCchhhHHhhhhCCcEEEEEEECCChh-hHHHHHHHHHHH
Q 037770 11 ISFTVWD-V-----GGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RIVEARDELHRM 60 (65)
Q Consensus 11 ~~l~~~d-~-----~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~ 60 (65)
+.+..+| . ..++++..+...++.++|++++|+|+++++ ++..+..|+..+
T Consensus 50 V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~ 106 (302)
T 2yv5_A 50 VWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVY 106 (302)
T ss_dssp EEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHH
T ss_pred EEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4556665 2 236777777788999999999999999886 788888887654
No 190
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.24 E-value=1.6e-05 Score=46.86 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=22.9
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
.+..+.+||++|+..+......++..++++|+|+|.++
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 34678899999999998888888999999999999974
No 191
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.17 E-value=0.0039 Score=35.11 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=28.8
Q ss_pred CEEEEEEECCCCcCch-------hhHHhhhhCCcEEEEEEECCC
Q 037770 10 NISFTVWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~~ 46 (65)
...+.+||++|..... .....+++.++++++|+|.++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3579999999987642 233446889999999999986
No 192
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.00 E-value=0.0033 Score=33.64 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCEEEEEEECCCCc-------CchhhH-------HhhhhC-------------CcEEEEEEECCC
Q 037770 9 KNISFTVWDVGGQD-------KIRPLW-------RHYFQN-------------TQGLIFVVDSND 46 (65)
Q Consensus 9 ~~~~l~~~d~~g~~-------~~~~~~-------~~~~~~-------------~~~ii~v~d~~~ 46 (65)
..+.+.+||++|.. .+.... ..|+.. +++++++++.++
T Consensus 63 ~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~ 127 (274)
T 3t5d_A 63 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127 (274)
T ss_dssp CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC
T ss_pred eEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC
Confidence 34689999999973 233333 344443 668888887665
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.99 E-value=0.0038 Score=36.80 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=38.3
Q ss_pred EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770 3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
..++..++..+++.||||+..|..=-...++-+|++++|+|...
T Consensus 92 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~ 135 (548)
T 3vqt_A 92 VMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK 135 (548)
T ss_dssp EEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT
T ss_pred eEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC
Confidence 34567788999999999999998877788999999999999974
No 194
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.68 E-value=0.0047 Score=35.22 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=31.1
Q ss_pred EEEECCEEEEEEECCCCcCchhhH------------HhhhhCCcEEEEEEECCChhhHHH
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLW------------RHYFQNTQGLIFVVDSNDRDRIVE 52 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~------------~~~~~~~~~ii~v~d~~~~~sf~~ 52 (65)
.+...+..+.+||++|..+..... ..++..++++++|+|.++..+..+
T Consensus 222 ~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 222 EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp EEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred EEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 345566788999999975433221 346778999999999987655443
No 195
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.66 E-value=0.00042 Score=38.69 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=15.2
Q ss_pred EEEEEEECCCC-------cCchhhHH-------hhhhCCcEE
Q 037770 11 ISFTVWDVGGQ-------DKIRPLWR-------HYFQNTQGL 38 (65)
Q Consensus 11 ~~l~~~d~~g~-------~~~~~~~~-------~~~~~~~~i 38 (65)
+.+.+||++|. +.+..++. .|++.+.++
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~ 136 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGL 136 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCS
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47899999999 66777766 777766554
No 196
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.32 E-value=0.056 Score=30.98 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=33.2
Q ss_pred EEEEEEECCCCcCc----hhhHH---hhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 11 ISFTVWDVGGQDKI----RPLWR---HYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 11 ~~l~~~d~~g~~~~----~~~~~---~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
..+.+||++|.... ..+.. .....++.++.++|++ .+.+.++..+.+++
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el 260 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEV 260 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHH
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHH
Confidence 67899999997432 11222 2345689999999998 56677776665554
No 197
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.03 E-value=0.02 Score=28.98 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=26.0
Q ss_pred EEEEEECCCCcC----------chhhHHhhh---hCCcEEEEEEECCChhhH
Q 037770 12 SFTVWDVGGQDK----------IRPLWRHYF---QNTQGLIFVVDSNDRDRI 50 (65)
Q Consensus 12 ~l~~~d~~g~~~----------~~~~~~~~~---~~~~~ii~v~d~~~~~sf 50 (65)
.+.+||++|... ++.....++ ...+++++++|+++..++
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 124 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD 124 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch
Confidence 467999999743 222223344 468899999999876554
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.94 E-value=0.06 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=33.1
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
+..+++.||||+..|..=-...++-+||+++|+|...
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave 120 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS 120 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC
Confidence 5789999999999998877788999999999999973
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.48 E-value=0.0042 Score=37.16 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=34.8
Q ss_pred EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770 7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
..++..+++.||||+..|..--....+-+|++++|+|...
T Consensus 63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~ 102 (638)
T 3j25_A 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD 102 (638)
T ss_dssp BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC
Confidence 3456778999999999998888888999999999999973
No 200
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.40 E-value=0.072 Score=29.54 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=24.2
Q ss_pred CEEEEEEECCCCcC-------------chhhHHhhhhCCcEEEEEE-ECC
Q 037770 10 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVV-DSN 45 (65)
Q Consensus 10 ~~~l~~~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~-d~~ 45 (65)
...+.+||++|... +..+...|+...+.+++++ +.+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~ 178 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPAN 178 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETT
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 46799999999632 3445567777776666554 554
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.53 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=33.8
Q ss_pred EEEEEECCEEEEEEECCCCcCch-------hhHHhhhhCCcEEEEEEECCChhh
Q 037770 3 VETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRDR 49 (65)
Q Consensus 3 ~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~~~~s 49 (65)
...+...+..+.+.|++|-..-. .......+.++.+++|+|.+++..
T Consensus 111 ~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~ 164 (376)
T 4a9a_A 111 PGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH 164 (376)
T ss_dssp EEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH
T ss_pred eEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH
Confidence 34566788899999999964422 112345678999999999998743
No 202
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.34 E-value=0.57 Score=26.77 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=27.3
Q ss_pred EEEEEEECCCCcC-------chhhHHhhhhCCcEEEEEEECCC
Q 037770 11 ISFTVWDVGGQDK-------IRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 11 ~~l~~~d~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
..+.+||++|... ....+..+++.+++++.|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688999999433 34455667789999999999874
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.77 E-value=0.16 Score=26.61 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=23.2
Q ss_pred EEEEEEECCCCcCchhhHH------hhhhCCcEEEEEEECCC
Q 037770 11 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSND 46 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~------~~~~~~~~ii~v~d~~~ 46 (65)
..+.++|++|......... ..+.. +.+++++|.+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~ 149 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEI 149 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhh
Confidence 4688999999876543221 13455 78888887653
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.48 E-value=0.19 Score=27.98 Aligned_cols=37 Identities=5% Similarity=0.028 Sum_probs=26.7
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
.+..+.++|++|... ........++.+++|+|.+..+
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~ 206 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGD 206 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTC
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCc
Confidence 457789999999543 2334457899999999876543
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.77 E-value=0.14 Score=28.37 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=25.3
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
+..+.++|++|...... .....+|++++|+|.+..+
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~ 183 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGD 183 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC----
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccH
Confidence 56799999999755432 3468999999999987543
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.61 E-value=0.2 Score=28.15 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=24.3
Q ss_pred CCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770 20 GQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 20 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 48 (65)
..+.|+..+..+++.++++++|+|++++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~ 83 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN 83 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc
Confidence 35678888899999999999999999864
No 207
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.09 E-value=0.21 Score=28.06 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=24.3
Q ss_pred CCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770 20 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDR 49 (65)
Q Consensus 20 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 49 (65)
.++.++.....++..++.+++|+|++++.+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~ 86 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG 86 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC
Confidence 467788888888899999999999998763
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.45 E-value=0.53 Score=26.23 Aligned_cols=38 Identities=5% Similarity=0.028 Sum_probs=24.8
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR 49 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 49 (65)
.+..+.++|++|-.. ........++.+++|+|.+..+.
T Consensus 165 ~~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~ 202 (349)
T 2www_A 165 AGYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDE 202 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC----
T ss_pred CCCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchh
Confidence 345678999999532 23445678999999999876543
No 209
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=81.63 E-value=0.71 Score=25.15 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=11.8
Q ss_pred CEEEEEEECCCC-------cCchhhHH
Q 037770 10 NISFTVWDVGGQ-------DKIRPLWR 29 (65)
Q Consensus 10 ~~~l~~~d~~g~-------~~~~~~~~ 29 (65)
...+.+||++|. +.+.....
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~ 101 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIIS 101 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHH
Confidence 468899999998 55555554
No 210
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=76.95 E-value=4.3 Score=20.36 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=20.3
Q ss_pred cEEEEEEECCCh-hhHHHHHHHHHHHhcc
Q 037770 36 QGLIFVVDSNDR-DRIVEARDELHRMLNE 63 (65)
Q Consensus 36 ~~ii~v~d~~~~-~sf~~~~~~~~~~~~~ 63 (65)
--+++++|.|.. ..|+.+++.+..+++.
T Consensus 7 ~div~vlD~SgSm~~~~~~k~~~~~~~~~ 35 (200)
T 1v7p_C 7 IDVVVVCDESNSIYPWDAVKNFLEKFVQG 35 (200)
T ss_dssp EEEEEEEECCTTCCCHHHHHHHHHHHHHT
T ss_pred ccEEEEEECCCCcccHHHHHHHHHHHHHh
Confidence 357788888843 3488888888887764
No 211
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=75.19 E-value=6.3 Score=19.86 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=22.3
Q ss_pred CcEEEEEEECCC---hhhHHHHHHHHHHHhccc
Q 037770 35 TQGLIFVVDSND---RDRIVEARDELHRMLNEV 64 (65)
Q Consensus 35 ~~~ii~v~d~~~---~~sf~~~~~~~~~~~~~~ 64 (65)
.--+++++|.|. .+.|+.+++++..+++.+
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l 45 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERL 45 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTB
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345788999984 356888888888887653
No 212
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=73.87 E-value=1.2 Score=25.79 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=26.8
Q ss_pred EEEEECCCCcC--chhhH--------HhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770 13 FTVWDVGGQDK--IRPLW--------RHYFQNTQGLIFVVDSNDRDRIVEARDE 56 (65)
Q Consensus 13 l~~~d~~g~~~--~~~~~--------~~~~~~~~~ii~v~d~~~~~sf~~~~~~ 56 (65)
..+||..|... .+..| ..++....|.++|+|.++.. ......|
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~-~~~R~~~ 141 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTT-RERRAMI 141 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCS-HHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHHH
Confidence 35678777632 33343 55666778888999999874 3333333
No 213
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=73.59 E-value=8.8 Score=24.18 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=24.3
Q ss_pred EEEEEEECCCCcCc-------------hhhHHhhh-hCCcEEEEEEECCCh
Q 037770 11 ISFTVWDVGGQDKI-------------RPLWRHYF-QNTQGLIFVVDSNDR 47 (65)
Q Consensus 11 ~~l~~~d~~g~~~~-------------~~~~~~~~-~~~~~ii~v~d~~~~ 47 (65)
..+.++|++|-... ......|. ..++.+++|+|.+..
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~ 200 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD 200 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC
Confidence 35779999996541 12223333 467899999998753
No 214
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=73.36 E-value=6.7 Score=19.30 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred CcEEEEEEECCC---hhhHHHHHHHHHHHhcc
Q 037770 35 TQGLIFVVDSND---RDRIVEARDELHRMLNE 63 (65)
Q Consensus 35 ~~~ii~v~d~~~---~~sf~~~~~~~~~~~~~ 63 (65)
.--+++++|.|. .+.|+.+++.+..+++.
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~ 48 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMV 48 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 446788999984 35688888888877654
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=72.90 E-value=4 Score=22.06 Aligned_cols=34 Identities=15% Similarity=-0.075 Sum_probs=21.1
Q ss_pred ECCCCc-CchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770 17 DVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRI 50 (65)
Q Consensus 17 d~~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~sf 50 (65)
..+|+. ............++.++.|+|..++.+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~ 39 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSS 39 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTT
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCcc
Confidence 356664 2334445577889999999999877664
No 216
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=71.97 E-value=6.8 Score=20.01 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=21.2
Q ss_pred cEEEEEEECCC-hhhHHHHHHHHHHHhcc
Q 037770 36 QGLIFVVDSND-RDRIVEARDELHRMLNE 63 (65)
Q Consensus 36 ~~ii~v~d~~~-~~sf~~~~~~~~~~~~~ 63 (65)
--+++++|.|. ...|+.+++.+..+++.
T Consensus 23 ~div~vlD~SgSM~~~~~~k~~~~~~~~~ 51 (223)
T 2b2x_A 23 LDIVIVLDGSNSIYPWESVIAFLNDLLKR 51 (223)
T ss_dssp EEEEEEEECSTTCCCHHHHHHHHHHHHTT
T ss_pred ceEEEEEECCCChhhHHHHHHHHHHHHHh
Confidence 45788999984 34588888888888764
No 217
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=71.74 E-value=3.2 Score=23.92 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=7.9
Q ss_pred EEEEEEECCCCcCc
Q 037770 11 ISFTVWDVGGQDKI 24 (65)
Q Consensus 11 ~~l~~~d~~g~~~~ 24 (65)
..+.+||++|....
T Consensus 88 ~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 88 LLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEEEEECC-----
T ss_pred cceeeeechhhhhh
Confidence 57899999998654
No 218
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=71.73 E-value=7.9 Score=19.44 Aligned_cols=31 Identities=10% Similarity=0.354 Sum_probs=22.2
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHhccc
Q 037770 34 NTQGLIFVVDSNDR---DRIVEARDELHRMLNEV 64 (65)
Q Consensus 34 ~~~~ii~v~d~~~~---~sf~~~~~~~~~~~~~~ 64 (65)
..--+++++|.|.. +.|+.+++.+..+++.+
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l 53 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRM 53 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34457889999843 56888888888776543
No 219
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=71.55 E-value=8.1 Score=19.53 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=19.2
Q ss_pred cEEEEEEECCC-hhhHHHHHHHHHHHhcc
Q 037770 36 QGLIFVVDSND-RDRIVEARDELHRMLNE 63 (65)
Q Consensus 36 ~~ii~v~d~~~-~~sf~~~~~~~~~~~~~ 63 (65)
--+++++|.|. ...++.+++.+..+++.
T Consensus 8 ~div~vlD~SgSm~~~~~~k~~~~~~~~~ 36 (213)
T 1pt6_A 8 LDIVIVLDGSNSIYPWDSVTAFLNDLLKR 36 (213)
T ss_dssp EEEEEEEECCTTCCCHHHHHHHHHHHHTT
T ss_pred ccEEEEEECCCChhhHHHHHHHHHHHHHh
Confidence 35677888874 34477888877777654
No 220
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=69.52 E-value=1.9 Score=21.77 Aligned_cols=35 Identities=6% Similarity=0.010 Sum_probs=21.2
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
+..+.+||++|+...+ ..+....+++++|+|.++.
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~ 142 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEG 142 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGC
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCc
Confidence 3567889988852111 1111356778888987654
No 221
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=68.85 E-value=8.9 Score=18.89 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHhcc
Q 037770 37 GLIFVVDSND---RDRIVEARDELHRMLNE 63 (65)
Q Consensus 37 ~ii~v~d~~~---~~sf~~~~~~~~~~~~~ 63 (65)
-+++++|.|. .+.|+.+++.+..+++.
T Consensus 4 divfvlD~S~Sm~~~~~~~~k~~~~~~~~~ 33 (179)
T 1mjn_A 4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKK 33 (179)
T ss_dssp EEEEEEECBTTCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678888874 34578888888777654
No 222
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=68.52 E-value=9.1 Score=18.90 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=20.1
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHhcc
Q 037770 36 QGLIFVVDSND---RDRIVEARDELHRMLNE 63 (65)
Q Consensus 36 ~~ii~v~d~~~---~~sf~~~~~~~~~~~~~ 63 (65)
--+++++|.|. ...|+.+++.+..+++.
T Consensus 6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~ 36 (189)
T 1atz_A 6 LDVILLLDGSSSFPASYFDEMKSFAKAFISK 36 (189)
T ss_dssp EEEEEEEECSSSSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCChhhHHHHHHHHHHHHHh
Confidence 35778888884 35688888888777654
No 223
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=68.14 E-value=7.1 Score=17.53 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=14.1
Q ss_pred EEEEEEECCChhhHHHHHHHHH
Q 037770 37 GLIFVVDSNDRDRIVEARDELH 58 (65)
Q Consensus 37 ~ii~v~d~~~~~sf~~~~~~~~ 58 (65)
-++++||+++......+.+.++
T Consensus 5 ~~lV~YDI~~~kr~~kv~k~l~ 26 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKLANLLK 26 (90)
T ss_dssp EEEEEEECCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCChHHHHHHHHHHH
Confidence 3678889987655555544443
No 224
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=67.15 E-value=17 Score=21.59 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=26.4
Q ss_pred CCEEEEEEECCCCcCch-hhHHh---h--hhCCcEEEEEEECCChh
Q 037770 9 KNISFTVWDVGGQDKIR-PLWRH---Y--FQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~-~~~~~---~--~~~~~~ii~v~d~~~~~ 48 (65)
.+..+.++|++|..... ..+.. . ...++.+++|+|.+...
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ 227 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc
Confidence 45678999999986532 12111 1 23688999999998643
No 225
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=66.23 E-value=10 Score=18.74 Aligned_cols=28 Identities=7% Similarity=0.336 Sum_probs=19.3
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHhcc
Q 037770 36 QGLIFVVDSND---RDRIVEARDELHRMLNE 63 (65)
Q Consensus 36 ~~ii~v~d~~~---~~sf~~~~~~~~~~~~~ 63 (65)
--+++++|.|. ...|+.+++.+..+++.
T Consensus 6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~ 36 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQ 36 (194)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 35778888874 34577777777776653
No 226
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=65.74 E-value=8.3 Score=17.43 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=14.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHH
Q 037770 36 QGLIFVVDSNDRDRIVEARDELH 58 (65)
Q Consensus 36 ~~ii~v~d~~~~~sf~~~~~~~~ 58 (65)
.-++++||+++...-..+.+.+.
T Consensus 4 M~vlV~YDI~~~krr~kv~k~l~ 26 (91)
T 3exc_X 4 MKLLVVYDVSDDSKRNKLANNLK 26 (91)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCchHHHHHHHHHH
Confidence 35788899987655444444433
No 227
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=64.84 E-value=4.5 Score=22.45 Aligned_cols=36 Identities=6% Similarity=0.006 Sum_probs=25.0
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
.+..+.+.|++|...-. ......++.+++++|.+..
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC-
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCc
Confidence 35678899999975432 2345678888988887543
No 228
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu horikoshii OT3, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii} SCOP: e.67.1.1
Probab=60.33 E-value=18 Score=19.56 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=38.1
Q ss_pred EEEECCEEEEEEECCCCcCchhhHHhh-------hhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770 5 TVEYKNISFTVWDVGGQDKIRPLWRHY-------FQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63 (65)
Q Consensus 5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~-------~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~ 63 (65)
-+...+..+.+|...|.+......... +.+...+-++.|+... +.+.+|+..++++
T Consensus 52 ~l~~~~~~I~V~~seGk~~l~~~Lk~~l~a~~~~~~~v~~IgIarDaD~d---~~a~qSI~~~L~s 114 (241)
T 2p62_A 52 VLEKDNIALVIIHAEGKQRIPKVLKSVLDSVKLGLLNVEEVYVVRDVDEG---NDVFEWVLSFLRE 114 (241)
T ss_dssp EEEETTEEEEEECSCCTTTHHHHHHHHHHHHHHTCCCEEEEEEEEESSSS---SCHHHHHHTTCTT
T ss_pred hhcccCceEEEEeCcchhhHHHHHHHHHhCccccccccceEEEEEecCCC---ccHHHHHHHHHHh
Confidence 355677899999999999987654333 3456778888888654 3455666555443
No 229
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=60.13 E-value=14 Score=18.23 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=24.4
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 47 (65)
...+-+.|+++... .........++.++++...+..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~ 110 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL 110 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH
Confidence 35678899998663 3334556678898888866533
No 230
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=58.36 E-value=13 Score=17.11 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=27.8
Q ss_pred EEEEECCCCcCchhhHHhhhhCC-cEE---EEEEECCChhhHHHHHHHHHHHh
Q 037770 13 FTVWDVGGQDKIRPLWRHYFQNT-QGL---IFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 13 l~~~d~~g~~~~~~~~~~~~~~~-~~i---i~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+-.+|++...+.+.....+.+.+ .-+ +|...+ ++..+..++..+..++
T Consensus 6 lV~YDI~~~kr~~kv~k~L~~yGl~rvQ~SVFe~~l-t~~~~~~l~~~L~~~i 57 (101)
T 2ivy_A 6 LIFYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDL-NSSRLKDVEAGLKIIG 57 (101)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTCEEEETTEEEEEE-CHHHHHHHHHHHHHHT
T ss_pred EEEEeCCChHHHHHHHHHHHHhCChhccccEEEEEc-CHHHHHHHHHHHHHHh
Confidence 44677776655555555555554 332 244455 5666677777666665
No 231
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=57.61 E-value=18 Score=21.17 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=33.1
Q ss_pred EEEEEECCCCcCch--hhHHhhh----hCCcE------EEEEEECCChhhHHHHHHHHHHHhc
Q 037770 12 SFTVWDVGGQDKIR--PLWRHYF----QNTQG------LIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 12 ~l~~~d~~g~~~~~--~~~~~~~----~~~~~------ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
.|++.-+.|..... ..|+.-. ..++. =-.++|++|++|-.+...||.++..
T Consensus 260 PF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~l~~~T~~~~VDl~d~~s~~~a~~WW~~lT~ 322 (427)
T 4e6n_A 260 PFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTA 322 (427)
T ss_dssp EEEEEEETTEECTTSCHHHHHHHHHHHHSTTCTTBCCCCEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred chhhhhcccccccCCChHHHHHHHHHHHhcCccceeccccEEeeCCCHHHHHHHHHHHHHHhc
Confidence 56777777754433 2443221 23331 2357899999999999999998864
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=54.15 E-value=20 Score=19.13 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=10.5
Q ss_pred hhhhCCcEEEEEEECCChh
Q 037770 30 HYFQNTQGLIFVVDSNDRD 48 (65)
Q Consensus 30 ~~~~~~~~ii~v~d~~~~~ 48 (65)
.....+|.++.|+|+.++.
T Consensus 17 ~~l~~~D~vl~VvDar~P~ 35 (262)
T 3cnl_A 17 DLLRLVNTVVEVRDARAPF 35 (262)
T ss_dssp HHHTTCSEEEEEEETTSTT
T ss_pred HHHhhCCEEEEEeeCCCCC
Confidence 3455566666666655443
No 233
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=53.37 E-value=20 Score=17.94 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=19.1
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHhc
Q 037770 35 TQGLIFVVDSNDR---DRIVEARDELHRMLN 62 (65)
Q Consensus 35 ~~~ii~v~d~~~~---~sf~~~~~~~~~~~~ 62 (65)
.--+++|+|.|.. ..|..+++.+..+++
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~ 45 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIE 45 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHH
Confidence 4457888998843 357777777777654
No 234
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=49.31 E-value=20 Score=16.54 Aligned_cols=11 Identities=9% Similarity=-0.010 Sum_probs=8.1
Q ss_pred EEEEEEECCCh
Q 037770 37 GLIFVVDSNDR 47 (65)
Q Consensus 37 ~ii~v~d~~~~ 47 (65)
-++++||+++.
T Consensus 9 ~vlV~YDI~~~ 19 (103)
T 3oq2_A 9 LVLISYDVSFE 19 (103)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEECCCC
Confidence 56778888765
No 235
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=46.48 E-value=32 Score=18.25 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=20.1
Q ss_pred CcEEEEEEECCCh---hhH-HHHHHHHHHHhccc
Q 037770 35 TQGLIFVVDSNDR---DRI-VEARDELHRMLNEV 64 (65)
Q Consensus 35 ~~~ii~v~d~~~~---~sf-~~~~~~~~~~~~~~ 64 (65)
.--+++++|.|.. +.| +.+++.+..+++.+
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l 54 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQL 54 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTC
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 3457788898843 346 67778887776543
No 236
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=46.16 E-value=33 Score=19.85 Aligned_cols=27 Identities=11% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHhcc
Q 037770 37 GLIFVVDSND---RDRIVEARDELHRMLNE 63 (65)
Q Consensus 37 ~ii~v~d~~~---~~sf~~~~~~~~~~~~~ 63 (65)
-+++++|.|. .+.|+.+++.+..+++.
T Consensus 11 divfvlD~SgSM~~~~~~~~k~~~~~l~~~ 40 (509)
T 2odp_A 11 NLYLLLDASQSVSENDFLIFKESASLMVDR 40 (509)
T ss_dssp EEEEEEECSTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCccchhhHHHHHHHHHHHHHH
Confidence 4678888884 34577888877777643
No 237
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=45.06 E-value=37 Score=18.52 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCEEEEEEECCCCcC--chh-hHH-----hhhhCCcEEEEEEECCCh
Q 037770 9 KNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDR 47 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~ 47 (65)
....+-+.|++|... ... ... .....++.+++|.|.+..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 225 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG 225 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch
Confidence 345688999999877 321 110 134478899999988643
No 238
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=44.23 E-value=22 Score=15.72 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=6.0
Q ss_pred EEEEEECCC
Q 037770 38 LIFVVDSND 46 (65)
Q Consensus 38 ii~v~d~~~ 46 (65)
++++||+++
T Consensus 3 vlv~YDI~~ 11 (85)
T 2i0x_A 3 IVVVYDVGV 11 (85)
T ss_dssp EEEEEECCS
T ss_pred EEEEeeCCh
Confidence 566677765
No 239
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=44.19 E-value=37 Score=19.52 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=18.5
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHhcc
Q 037770 38 LIFVVDSNDR---DRIVEARDELHRMLNE 63 (65)
Q Consensus 38 ii~v~d~~~~---~sf~~~~~~~~~~~~~ 63 (65)
+++++|.|.. ..|+.+++.+..+++.
T Consensus 4 iv~vlD~SgSM~~~~~~~~k~~~~~~~~~ 32 (497)
T 1rrk_A 4 IYLVLDGSDSIGASNFTGAKKVLVNLIEK 32 (497)
T ss_dssp EEEEEECSTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCcchhhHHHHHHHHHHHHHH
Confidence 6788888843 4688888777776653
No 240
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=43.71 E-value=30 Score=17.39 Aligned_cols=48 Identities=4% Similarity=-0.040 Sum_probs=29.6
Q ss_pred EEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 13 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 13 l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+.+.|+......... ..-+..+|++|+.+.+=...--..++.|++++.
T Consensus 31 v~v~dL~~~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~ 78 (177)
T 3ha2_A 31 VTWHPLVADFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVM 78 (177)
T ss_dssp EEEEECCTTCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred EEEEECCCcccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHh
Confidence 445555543333322 345678999999987765544456777887764
No 241
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=40.42 E-value=43 Score=20.39 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=19.5
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHhcc
Q 037770 37 GLIFVVDSND---RDRIVEARDELHRMLNE 63 (65)
Q Consensus 37 ~ii~v~d~~~---~~sf~~~~~~~~~~~~~ 63 (65)
-+++|+|.|. .+.|+.+++.+..+++.
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~ 274 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEK 274 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHh
Confidence 4788999984 34578888877777653
No 242
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=39.48 E-value=40 Score=17.31 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=31.2
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
...+-+.|+++... .........++.++++... +..+...+...++.+
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l 160 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGIL 160 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHH
Confidence 45678899987544 3445566788998888765 455555555554443
No 243
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=39.15 E-value=40 Score=17.17 Aligned_cols=51 Identities=4% Similarity=-0.003 Sum_probs=32.2
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+..+.+.|+......... ..-+..+|++|+.+.+=...--..++.|++++.
T Consensus 47 g~~v~~~dL~~~~d~~~~-~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 47 GHDVRIVRADSDYDVKAE-VQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp TCEEEEEESSSCCCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCccccHHHH-HHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 345667776644444333 335678999999987765444456677777654
No 244
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=39.07 E-value=44 Score=17.65 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=17.9
Q ss_pred cEEEEEEECCCh---hhH-HHHHHHHHHHhcc
Q 037770 36 QGLIFVVDSNDR---DRI-VEARDELHRMLNE 63 (65)
Q Consensus 36 ~~ii~v~d~~~~---~sf-~~~~~~~~~~~~~ 63 (65)
--+++++|.|.. ..| ..+++.+..+++.
T Consensus 19 ~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~ 50 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGYPNWITKVIPMLNGLINS 50 (266)
T ss_dssp EEEEEEEECSTTTCHHHHHHTHHHHHHHHHHT
T ss_pred eeEEEEEECCCCcChhHHHHHHHHHHHHHHHH
Confidence 346788888743 446 3667777776654
No 245
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=39.01 E-value=28 Score=19.04 Aligned_cols=32 Identities=9% Similarity=-0.077 Sum_probs=25.1
Q ss_pred hhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770 31 YFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62 (65)
Q Consensus 31 ~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~ 62 (65)
-+..+|.+|+++.+=...--..++.|+++++.
T Consensus 109 ~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~ 140 (280)
T 4gi5_A 109 KLLWADTVIFQFPLWWFSMPAIMKGWIDRVYA 140 (280)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSC
T ss_pred HHHhCCEEEEEeccccccCcHHHHHHHHHhcc
Confidence 35679999999988766655678899988764
No 246
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=38.93 E-value=33 Score=17.32 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=22.8
Q ss_pred hhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 31 YFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 31 ~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
-+..+|++|++...=+..--..++.|++++.
T Consensus 70 ~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 70 LVTWADHLIFIFPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHhCCEEEEECchhhccccHHHHHHHHHHc
Confidence 4567999999987765544456788888774
No 247
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=38.78 E-value=35 Score=17.91 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=28.0
Q ss_pred EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
.+.+.|+........ ...-+..+|++|+.+..=.-.--..++.|++++.
T Consensus 62 ev~~~dL~~~~Dv~~-~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~ 110 (218)
T 3rpe_A 62 QVKITTVDQGYDIES-EIENYLWADTIIYQMPAWWMGEPWILKKYIDEVF 110 (218)
T ss_dssp CEEEEEGGGCCCHHH-HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred EEEEEECCCccCHHH-HHHHHHhCCEEEEECChHhccCCHHHHHHHHHHH
Confidence 344555543222222 2345677888888877755444456677777664
No 248
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=37.76 E-value=33 Score=15.81 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=8.4
Q ss_pred cEEEEEEECCCh
Q 037770 36 QGLIFVVDSNDR 47 (65)
Q Consensus 36 ~~ii~v~d~~~~ 47 (65)
.-+|++||+++.
T Consensus 5 M~vlv~YDI~~~ 16 (100)
T 4es1_A 5 MLVLITYDVQTS 16 (100)
T ss_dssp EEEEEEEECCTT
T ss_pred EEEEEEEECCCC
Confidence 346778898764
No 249
>4ftd_A Uncharacterized protein; 6-bladed-beta-propeller, immunoglobulin-like, carbohydrate metabolism, structural genomics; 1.91A {Bacteroides eggerthii}
Probab=36.50 E-value=51 Score=19.67 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHH
Q 037770 34 NTQGLIFVVDSNDRDRIVEARDELHR 59 (65)
Q Consensus 34 ~~~~ii~v~d~~~~~sf~~~~~~~~~ 59 (65)
..+..++|||+++.....++.+.+.+
T Consensus 365 ~~~~~l~vYDIS~g~~~~~a~~~~~~ 390 (453)
T 4ftd_A 365 KASIALEVYDLTKGETIEDALKKFDE 390 (453)
T ss_dssp CCCCEEEEEECCSSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCcchhhhhhcccc
Confidence 45568999999998877776666554
No 250
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=36.41 E-value=49 Score=20.14 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=21.1
Q ss_pred hhCCcEEEEEEECCCh----------hhHHHHHHHHHHHhc
Q 037770 32 FQNTQGLIFVVDSNDR----------DRIVEARDELHRMLN 62 (65)
Q Consensus 32 ~~~~~~ii~v~d~~~~----------~sf~~~~~~~~~~~~ 62 (65)
+.+.+++++++|++.. ..|..+++.+..+++
T Consensus 32 ~~~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~ 72 (609)
T 1jey_A 32 YSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYI 72 (609)
T ss_dssp --CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHH
Confidence 5678999999999832 257777776666554
No 251
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=34.82 E-value=42 Score=16.20 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=15.8
Q ss_pred EEEEEEECCChh--hHHHHHHHHHHHhc
Q 037770 37 GLIFVVDSNDRD--RIVEARDELHRMLN 62 (65)
Q Consensus 37 ~ii~v~d~~~~~--sf~~~~~~~~~~~~ 62 (65)
-+++++|.|..- .+...++..+.++.
T Consensus 9 div~vlD~SgSM~~~~~~~~~~~~~~~~ 36 (185)
T 3n2n_F 9 DLYFILDKSGSVLHHWNEIYYFVEQLAH 36 (185)
T ss_dssp EEEEEEECSGGGGGGHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCChhhhHHHHHHHHHHHHH
Confidence 467888887432 45566565555543
No 252
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=34.34 E-value=45 Score=16.35 Aligned_cols=30 Identities=10% Similarity=0.366 Sum_probs=17.7
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHhcc
Q 037770 34 NTQGLIFVVDSNDR---DRIVEARDELHRMLNE 63 (65)
Q Consensus 34 ~~~~ii~v~d~~~~---~sf~~~~~~~~~~~~~ 63 (65)
...-+++++|.|.. ..+...++.+..+++.
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~ 40 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQ 40 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 33456777777743 2455666666666554
No 253
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=34.33 E-value=52 Score=17.16 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=28.2
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHH
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHR 59 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~ 59 (65)
....+-+.|+++..............++.++++...+ ..+...+...++.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~ 176 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINM 176 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHH
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHH
Confidence 3467889999986543322222223678888887554 3334445444443
No 254
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=33.60 E-value=38 Score=17.28 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=23.2
Q ss_pred hhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 30 HYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 30 ~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
.-+..+|++++.+.+=...--..++.|++++.
T Consensus 54 ~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 54 KLIETHDSLVWQFPIYWFNCPPLLKQWLDEVL 85 (192)
T ss_dssp HHHHTSSSEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHhCCEEEEEcChhhcCCCHHHHHHHHHHh
Confidence 45678999999987765544456778888764
No 255
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=33.39 E-value=45 Score=16.69 Aligned_cols=31 Identities=3% Similarity=-0.003 Sum_probs=22.3
Q ss_pred hhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 31 YFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 31 ~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
-+..+|++|++..+=.-.--..++.+++++.
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~ 121 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTIN 121 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHh
Confidence 3567999999987765444456777887764
No 256
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=31.11 E-value=56 Score=16.51 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=27.6
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD 55 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~ 55 (65)
...+-+.|+++.... ........++.++++... +..++..+..
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~ 173 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLN 173 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHH
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHH
Confidence 456789999875443 334456788999888866 4444444443
No 257
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=30.78 E-value=52 Score=16.62 Aligned_cols=31 Identities=3% Similarity=-0.003 Sum_probs=22.4
Q ss_pred hhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 31 YFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 31 ~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
-+..+|++|+....=+..--..++.|++++.
T Consensus 84 ~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~ 114 (212)
T 3r6w_A 84 ELFDSDLLVISTPMYNFSVPSGLKAWIDQIV 114 (212)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHhCCEEEEEcCcccccCCHHHHHHHHHHh
Confidence 3667999999987755544456778888774
No 258
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=30.24 E-value=43 Score=14.94 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=12.5
Q ss_pred EEECCChhhHHHHHHHHHHHh
Q 037770 41 VVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 41 v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+|++++++.+.........++
T Consensus 4 v~~v~d~~~~~~al~~~~n~~ 24 (108)
T 2pd2_A 4 VVQIKDFDKVPQALRSVINLY 24 (108)
T ss_dssp EEEECCGGGHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHHH
Confidence 455567777666655555444
No 259
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=29.88 E-value=49 Score=15.52 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=10.8
Q ss_pred CCcEEEEEEECCC
Q 037770 34 NTQGLIFVVDSND 46 (65)
Q Consensus 34 ~~~~ii~v~d~~~ 46 (65)
..||.|||.++.+
T Consensus 86 ~GDGkIFV~~Ve~ 98 (116)
T 4aff_A 86 NGDGKIFVSPVDQ 98 (116)
T ss_dssp TTCEEEEEEECSC
T ss_pred CCCeEEEEEEhHH
Confidence 4789999999875
No 260
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=29.77 E-value=53 Score=17.58 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=22.6
Q ss_pred hhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 32 FQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 32 ~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
+..+|++|+.+.+=...--..++.|++++.
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~ 120 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVF 120 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHH
Confidence 678999999988765544456788888764
No 261
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=29.64 E-value=1.1e+02 Score=19.38 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=19.9
Q ss_pred CCcEEEEEEECCC-hhhHHHHHHHHHHHhcc
Q 037770 34 NTQGLIFVVDSND-RDRIVEARDELHRMLNE 63 (65)
Q Consensus 34 ~~~~ii~v~d~~~-~~sf~~~~~~~~~~~~~ 63 (65)
....++||+|++- ...++.+++.+...++.
T Consensus 120 ~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~ 150 (768)
T 1m2o_A 120 VPPIFFFVVDLTSETENLDSLKESIITSLSL 150 (768)
T ss_dssp SCCEEEEEEECCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHh
Confidence 4567899999984 44456666666665543
No 262
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.23 E-value=37 Score=16.64 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=21.8
Q ss_pred EEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770 14 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR 49 (65)
Q Consensus 14 ~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 49 (65)
.+|-+. ..........|+.+..|+++|++.....
T Consensus 28 gvW~tt--~~~~~~L~~Af~~~~~V~L~FSvn~Sg~ 61 (141)
T 2yu6_A 28 GIWSTT--PSNERKLNRAFWESSIVYLVFSVQGSGH 61 (141)
T ss_dssp CEEECC--TTSHHHHHHHHHHSSCEEEEEEESSSSE
T ss_pred CEeecc--CccHHHHHHHHhcCCcEEEEEEECCCCe
Confidence 477654 3344445556777778888898865443
No 263
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=28.96 E-value=47 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=14.8
Q ss_pred hhhHHhhhhCCcEEEEEEECC
Q 037770 25 RPLWRHYFQNTQGLIFVVDSN 45 (65)
Q Consensus 25 ~~~~~~~~~~~~~ii~v~d~~ 45 (65)
..++..||.++-.-+|++|+.
T Consensus 105 d~Yr~lYYeGGvSSVYlWdld 125 (277)
T 3lk4_B 105 DQYRDLYFEGGVSSVYLWDLD 125 (277)
T ss_dssp HHHHHHHHSSSEEEEEEEEET
T ss_pred HHHHHHHhCCCeeEEEEEecC
Confidence 345567888877777877764
No 264
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=28.94 E-value=56 Score=15.82 Aligned_cols=31 Identities=13% Similarity=-0.090 Sum_probs=20.2
Q ss_pred hhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 30 HYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 30 ~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
.-+..+|++++...+=.-.--..++.+++++
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRW 97 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHh
Confidence 3567899999998775443334556666554
No 265
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=28.86 E-value=47 Score=18.57 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=16.0
Q ss_pred hhhHHhhhhCCcEEEEEEECCC
Q 037770 25 RPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 25 ~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
..++..||.++-.-+|++|+.+
T Consensus 123 d~Yr~lYYeGGvSSVYlWdld~ 144 (290)
T 4akr_B 123 EIYLNLYFEGGVSSVYCWDLDD 144 (290)
T ss_dssp HHHHHHHHSSSEEEEEEEEETT
T ss_pred HHHHHHHhcCCeeEEEEEecCC
Confidence 3456778888878888888743
No 266
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=27.86 E-value=84 Score=17.51 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=26.4
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA 53 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~ 53 (65)
...+-+.|++.... .........+|.+|++... +..+...+
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~-~~~s~~~~ 193 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTAT-DLFSFHAF 193 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECC-SHHHHHHH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecC-ChHHHHHH
Confidence 46678999997543 3344456679999988765 34443333
No 267
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=27.77 E-value=1.2e+02 Score=19.23 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=20.6
Q ss_pred hCCcEEEEEEECCC-hhhHHHHHHHHHHHhcc
Q 037770 33 QNTQGLIFVVDSND-RDRIVEARDELHRMLNE 63 (65)
Q Consensus 33 ~~~~~ii~v~d~~~-~~sf~~~~~~~~~~~~~ 63 (65)
.....+++|+|++- ...++.+++.+...++.
T Consensus 130 p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~ 161 (769)
T 2nut_A 130 QMPLIFLYVVDTCMEDEDLQALKESMQMSLSL 161 (769)
T ss_dssp CCCCEEEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCccHHHHHHHHHHHHHHHHh
Confidence 34567899999984 44456666666665543
No 268
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=27.76 E-value=64 Score=16.07 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCcEEEEEEECCCh--------hhHHHHHHHHHHHhcc
Q 037770 34 NTQGLIFVVDSNDR--------DRIVEARDELHRMLNE 63 (65)
Q Consensus 34 ~~~~ii~v~d~~~~--------~sf~~~~~~~~~~~~~ 63 (65)
...-+++|+|.|.. ..++.++..+..+++.
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~ 47 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDE 47 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHh
Confidence 44456777777633 2567777777766543
No 269
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=27.36 E-value=93 Score=18.69 Aligned_cols=28 Identities=7% Similarity=0.208 Sum_probs=19.9
Q ss_pred CcEEEEEEECCCh---------hhHHHHHHHHHHHhc
Q 037770 35 TQGLIFVVDSNDR---------DRIVEARDELHRMLN 62 (65)
Q Consensus 35 ~~~ii~v~d~~~~---------~sf~~~~~~~~~~~~ 62 (65)
..++++++|++.. ..|+.+++.+..+++
T Consensus 7 ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~ 43 (565)
T 1jey_B 7 KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQ 43 (565)
T ss_dssp CEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHH
Confidence 4789999999842 357777777666654
No 270
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=27.34 E-value=77 Score=17.38 Aligned_cols=30 Identities=7% Similarity=0.112 Sum_probs=21.0
Q ss_pred hhHHhhhhCCcEEEEEEECCChhhHHHHHH
Q 037770 26 PLWRHYFQNTQGLIFVVDSNDRDRIVEARD 55 (65)
Q Consensus 26 ~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~ 55 (65)
+......-++|++++...+.+.+.+.++.+
T Consensus 118 QI~eAr~~GADaILLI~a~L~~~~l~~l~~ 147 (258)
T 4a29_A 118 QIDDAYNLGADTVLLIVKILTERELESLLE 147 (258)
T ss_dssp HHHHHHHHTCSEEEEEGGGSCHHHHHHHHH
T ss_pred HHHHHHHcCCCeeehHHhhcCHHHHHHHHH
Confidence 345666779999998887777766555443
No 271
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=27.25 E-value=72 Score=16.56 Aligned_cols=45 Identities=7% Similarity=-0.025 Sum_probs=27.8
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL 57 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~ 57 (65)
...+-+.|+++... ......+..++.++++...+ ..+...+...+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~ 188 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFN 188 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHH
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHH
Confidence 35677899987653 23344566789999888764 33444444333
No 272
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=26.78 E-value=1.2e+02 Score=20.19 Aligned_cols=30 Identities=10% Similarity=0.359 Sum_probs=22.5
Q ss_pred CcEEEEEEECCC---hhhHHHHHHHHHHHhccc
Q 037770 35 TQGLIFVVDSND---RDRIVEARDELHRMLNEV 64 (65)
Q Consensus 35 ~~~ii~v~d~~~---~~sf~~~~~~~~~~~~~~ 64 (65)
.--+++++|.|. ...|..+++.+..+++.+
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~ 162 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQF 162 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSS
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhc
Confidence 345789999984 356888998888887653
No 273
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=26.67 E-value=53 Score=14.83 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=18.0
Q ss_pred CCcEEEEEE-ECCChhhHHHHHHHHHH
Q 037770 34 NTQGLIFVV-DSNDRDRIVEARDELHR 59 (65)
Q Consensus 34 ~~~~ii~v~-d~~~~~sf~~~~~~~~~ 59 (65)
+.+|+.++. +..+...++..+.|+++
T Consensus 51 ~~dGl~y~~T~~~s~~eLdk~t~wLD~ 77 (85)
T 2l48_A 51 QSDGLTYFISKPTSDAQLKAMKEYLDR 77 (85)
T ss_dssp CTTSCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCHHHHHHHHHHHhc
Confidence 346666664 55566778888888875
No 274
>1reg_X T4 REGA; translational regulator protein; 1.90A {Enterobacteria phage T4} SCOP: d.58.27.1
Probab=26.11 E-value=52 Score=15.86 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=15.5
Q ss_pred EECCChhhHHHHHHHHHHH
Q 037770 42 VDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 42 ~d~~~~~sf~~~~~~~~~~ 60 (65)
+.+..++.|..+++.+.+|
T Consensus 4 I~L~~pddFLKVrETLTRi 22 (122)
T 1reg_X 4 ITLKKPEDFLKVKETLTRM 22 (122)
T ss_dssp EECSSTTHHHHHHHHHHTE
T ss_pred EecCCcHHHHHHHHHHHHh
Confidence 4567888999999988875
No 275
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=25.45 E-value=79 Score=16.39 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=24.5
Q ss_pred CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770 9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 46 (65)
Q Consensus 9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 46 (65)
....+-+.|+++..... ....+..+|.++++...+.
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~ 145 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY 145 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch
Confidence 34667899999865432 2334567899999887653
No 276
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=24.19 E-value=83 Score=16.21 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=28.2
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHH
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHR 59 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~ 59 (65)
..+-+.|+++... .........++.++++... +..+...+...++.
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~ 156 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIV 156 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHH
Confidence 4577899987654 2333456678888888754 44445555444443
No 277
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=24.09 E-value=54 Score=15.02 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=10.3
Q ss_pred CcEEEEEEECCCh
Q 037770 35 TQGLIFVVDSNDR 47 (65)
Q Consensus 35 ~~~ii~v~d~~~~ 47 (65)
.+|.+||.++.+-
T Consensus 87 GdGkiFV~pVe~~ 99 (112)
T 2eg2_A 87 GDGKIFIIPVEDV 99 (112)
T ss_dssp TCCEEEEEECSCC
T ss_pred CCEEEEEEEhHhE
Confidence 5789999998653
No 278
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=23.74 E-value=90 Score=16.42 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=16.1
Q ss_pred EEEEEEECCCh--hhHHHHHHHHHHHhc
Q 037770 37 GLIFVVDSNDR--DRIVEARDELHRMLN 62 (65)
Q Consensus 37 ~ii~v~d~~~~--~sf~~~~~~~~~~~~ 62 (65)
-++|+.|.|.. +..+.+++...++.+
T Consensus 5 Dl~fl~D~S~SM~~di~~lk~~~~~l~~ 32 (212)
T 2iue_A 5 DLYFLMGLSGSAQGHLSNVQTLGSDLLK 32 (212)
T ss_dssp EEEEEEECCGGGTTTHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCcchhHHHHHHHHHHHHHH
Confidence 36788888843 336666666655543
No 279
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=23.56 E-value=68 Score=15.76 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=20.8
Q ss_pred HhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 29 RHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 29 ~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
..-+..+|++|++...=...--..++.+++++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~ 110 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRL 110 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTC
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHH
Confidence 34567899999987765443334566666654
No 280
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=23.36 E-value=72 Score=15.52 Aligned_cols=18 Identities=0% Similarity=-0.215 Sum_probs=13.2
Q ss_pred ChhhHHHHHHHHHHHhcc
Q 037770 46 DRDRIVEARDELHRMLNE 63 (65)
Q Consensus 46 ~~~sf~~~~~~~~~~~~~ 63 (65)
+++.-.++++|++.+++.
T Consensus 7 ~~~~e~e~~~WIe~~l~~ 24 (144)
T 1ujo_A 7 GEELEERLVEWIVVQCGP 24 (144)
T ss_dssp CCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 445567889999988753
No 281
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=23.04 E-value=87 Score=16.32 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=21.7
Q ss_pred hhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 32 FQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 32 ~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
...+|++|+....=.-.--..++.+++++.
T Consensus 90 l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (228)
T 3tem_A 90 VREADLVIFQFPLYWFSVPAILKGWMDRVL 119 (228)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHhCCEEEEECChhhcccCHHHHHHHHHHh
Confidence 568999999987755444456777777764
No 282
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=22.78 E-value=49 Score=16.29 Aligned_cols=32 Identities=0% Similarity=0.013 Sum_probs=20.9
Q ss_pred hhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 30 HYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 30 ~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
.-+..+|++|++..+=.-.--..++.+++++.
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 113 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIA 113 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHhe
Confidence 34668999999876544333345677777764
No 283
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=22.77 E-value=95 Score=17.88 Aligned_cols=32 Identities=0% Similarity=-0.112 Sum_probs=23.3
Q ss_pred hhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 30 HYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 30 ~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
.-+..+|++++.+.+=...--..++.|++++.
T Consensus 288 ~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~ 319 (413)
T 3l9w_A 288 EALSRADLIVWQHPMQWYSIPPLLKLWIDKVF 319 (413)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHhCCEEEEECchhhccCCHHHHHHHHHHH
Confidence 45678899999887765555566778888764
No 284
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=22.49 E-value=89 Score=15.93 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=21.3
Q ss_pred hhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 31 YFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 31 ~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
-+..+|++|+....=+..--..++.+++++.
T Consensus 89 ~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (211)
T 3p0r_A 89 QFLEADKVVFGFPLWNLTIPAVLHTYIDYLN 119 (211)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHhCCEEEEEcChhcccCCHHHHHHHHHHh
Confidence 3567999999887755444456677777764
No 285
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=22.43 E-value=1e+02 Score=16.48 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=29.8
Q ss_pred CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
...+-+.|+++....... ......++.++++... +..+...+...++.+
T Consensus 156 ~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l 204 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAN-DFDSIYAMNRIIAAV 204 (307)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECS-SHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecC-cHHHHHHHHHHHHHH
Confidence 356778999875443322 2345678888888754 455555655554444
No 286
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=22.41 E-value=75 Score=17.32 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=15.6
Q ss_pred chhhHHhhhhCCcEEEEEEECC
Q 037770 24 IRPLWRHYFQNTQGLIFVVDSN 45 (65)
Q Consensus 24 ~~~~~~~~~~~~~~ii~v~d~~ 45 (65)
+..++..||.++-.-+|++|+.
T Consensus 104 Fd~Yr~lYyeGGvSSVYlWdld 125 (244)
T 3aa0_B 104 FDQYRDLYFEGGVSSVYLWDLD 125 (244)
T ss_dssp HHHHHHHHHSSSEEEEEEEEET
T ss_pred HHHHHHHHhCCCcceEEEEecC
Confidence 3456677888877778888763
No 287
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=22.31 E-value=88 Score=15.81 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=29.8
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
..+-+.|+++.... ........++.++++... +..+...+...++.+
T Consensus 119 yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l 165 (245)
T 3ea0_A 119 YDYIIVDFGASIDH--VGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLC 165 (245)
T ss_dssp CSEEEEEEESSCCT--THHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCch--HHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHH
Confidence 45678898875432 334456678998888765 455566665555544
No 288
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=22.13 E-value=81 Score=15.31 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=11.7
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHh
Q 037770 37 GLIFVVDSNDR---DRIVEARDELHRML 61 (65)
Q Consensus 37 ~ii~v~d~~~~---~sf~~~~~~~~~~~ 61 (65)
.+++|+|.|.. ..+..+++.+..++
T Consensus 7 ~vv~vlD~SgSM~~~~~~~~k~~~~~~~ 34 (189)
T 2x31_A 7 VLIFAVDASGSAAVARLSEAKGAVELLL 34 (189)
T ss_dssp EEEEEEECCTTSCC--CHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 45566666532 33455555554444
No 289
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=22.07 E-value=1.3e+02 Score=17.72 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=25.1
Q ss_pred CEEEEEEECCCCcCchhhH------HhhhhCCcEEEEEEECCChhh
Q 037770 10 NISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRDR 49 (65)
Q Consensus 10 ~~~l~~~d~~g~~~~~~~~------~~~~~~~~~ii~v~d~~~~~s 49 (65)
+..+-+.|++|........ -......+.+++|.|.+.-+.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~ 227 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ 227 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh
Confidence 3567899999965533211 112235688999999875443
No 290
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=21.90 E-value=95 Score=16.11 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=21.4
Q ss_pred hhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770 31 YFQNTQGLIFVVDSNDRDRIVEARDELHRML 61 (65)
Q Consensus 31 ~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~ 61 (65)
-+..+|++|+....=+..--..++.|++++.
T Consensus 91 ~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 121 (223)
T 3u7i_A 91 QFKSANTYVIVLPLHNFNIPSKLKDYMDNIM 121 (223)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHhCCEEEEEcChhhccCCHHHHHHHHHHh
Confidence 4567899999987755444456677777654
No 291
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=21.89 E-value=45 Score=15.26 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=9.8
Q ss_pred CcEEEEEEECCC
Q 037770 35 TQGLIFVVDSND 46 (65)
Q Consensus 35 ~~~ii~v~d~~~ 46 (65)
.+|.+||.++.+
T Consensus 87 GdGkiFV~~V~~ 98 (112)
T 1hwu_A 87 GDGKIFVQEVEQ 98 (112)
T ss_dssp TCCEEEEEECSE
T ss_pred CCEEEEEEEhHH
Confidence 689999998864
No 292
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=21.76 E-value=46 Score=15.31 Aligned_cols=13 Identities=15% Similarity=0.297 Sum_probs=10.2
Q ss_pred CcEEEEEEECCCh
Q 037770 35 TQGLIFVVDSNDR 47 (65)
Q Consensus 35 ~~~ii~v~d~~~~ 47 (65)
.+|.+||.++.+-
T Consensus 89 GdGkiFV~pVe~~ 101 (114)
T 3bzq_A 89 GDGKVWVSPVDTI 101 (114)
T ss_dssp TCCEEEEEEESCC
T ss_pred CCEEEEEEEhHHe
Confidence 6789999988653
No 293
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=21.71 E-value=97 Score=16.08 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=26.6
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEE
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 43 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d 43 (65)
-.+.+|---|+..-+.+...+-+....++|.|.
T Consensus 76 g~i~lWIevG~Pde~rl~KA~~ra~~V~vy~yg 108 (182)
T 2g3w_A 76 GDPDLWIDLGQPDESRVRKACNRSREAVVIGYG 108 (182)
T ss_dssp SCEEEEEEESCCCHHHHHHHHHHSSEEEEEECC
T ss_pred CCEEEEEEcCCCCHHHHHHhhccCCeEEEEecC
Confidence 357789888999999898888888877777763
No 294
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=21.63 E-value=91 Score=15.70 Aligned_cols=47 Identities=6% Similarity=0.003 Sum_probs=29.2
Q ss_pred EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770 11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60 (65)
Q Consensus 11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~ 60 (65)
..+-+.|+++... .........++.++++... +..+...+...++.+
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l 158 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVL 158 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHH
Confidence 4577899987654 2334456778888888755 444555555544433
No 295
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=21.56 E-value=48 Score=15.64 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.4
Q ss_pred CCcEEEEEEECCC
Q 037770 34 NTQGLIFVVDSND 46 (65)
Q Consensus 34 ~~~~ii~v~d~~~ 46 (65)
..||.|||.++.+
T Consensus 86 ~GDGkIFV~~Ve~ 98 (118)
T 3t9z_A 86 FGDGRIFVIPVEK 98 (118)
T ss_dssp TTCCEEEEEECCE
T ss_pred CCCeEEEEEEhHH
Confidence 4789999998864
No 296
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=20.96 E-value=49 Score=15.26 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.1
Q ss_pred CCcEEEEEEECCC
Q 037770 34 NTQGLIFVVDSND 46 (65)
Q Consensus 34 ~~~~ii~v~d~~~ 46 (65)
..+|.+||.++.+
T Consensus 88 ~GdGkiFV~pVe~ 100 (114)
T 2gw8_A 88 IGDGKIFVLPVEE 100 (114)
T ss_dssp TTCCEEEEEEESC
T ss_pred CCCEEEEEEEhHH
Confidence 3578999998865
No 297
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=20.91 E-value=38 Score=15.54 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=13.2
Q ss_pred CChhhHHHHHHHHHHHhccc
Q 037770 45 NDRDRIVEARDELHRMLNEV 64 (65)
Q Consensus 45 ~~~~sf~~~~~~~~~~~~~~ 64 (65)
+...++.++.+|-.++++++
T Consensus 18 ~~v~~l~~AekWR~qvikEI 37 (92)
T 1x4t_A 18 SECTELPKAEKWRRQIIGEI 37 (92)
T ss_dssp TTCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHH
Confidence 34456778888877776653
No 298
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=20.79 E-value=49 Score=15.30 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=10.1
Q ss_pred CCcEEEEEEECCC
Q 037770 34 NTQGLIFVVDSND 46 (65)
Q Consensus 34 ~~~~ii~v~d~~~ 46 (65)
..||.|||.++.+
T Consensus 86 ~GdGkIfV~~v~~ 98 (112)
T 3mhy_A 86 IGDGKIFVLDIAQ 98 (112)
T ss_dssp TTCCEEEEEECSE
T ss_pred CCCeEEEEEEhHh
Confidence 3688999988864
No 299
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=20.77 E-value=1.4e+02 Score=17.53 Aligned_cols=30 Identities=7% Similarity=0.306 Sum_probs=20.9
Q ss_pred CCcEEEEEEECCCh-----hhHHHHHHHHHHHhcc
Q 037770 34 NTQGLIFVVDSNDR-----DRIVEARDELHRMLNE 63 (65)
Q Consensus 34 ~~~~ii~v~d~~~~-----~sf~~~~~~~~~~~~~ 63 (65)
..-.+++|+|.|.. ..++.+++.+..+++.
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~ 110 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDT 110 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHh
Confidence 34558899999843 3477778777777654
No 300
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=20.18 E-value=52 Score=15.55 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=10.3
Q ss_pred CCcEEEEEEECCC
Q 037770 34 NTQGLIFVVDSND 46 (65)
Q Consensus 34 ~~~~ii~v~d~~~ 46 (65)
..||.|||.++.+
T Consensus 86 ~GDGkIFV~~Ve~ 98 (119)
T 3ncq_A 86 PGDGKIFIIPVED 98 (119)
T ss_dssp TTCCEEEEEECSE
T ss_pred CCCCEEEEEEhHh
Confidence 4789999998864
Done!