BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037772
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
1- Thiatrehazolin
pdb|2JJB|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|B Chain B, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|C Chain C, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|D Chain D, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2WYN|A Chain A, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|B Chain B, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|C Chain C, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|D Chain D, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
Length = 535
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 113/246 (45%), Gaps = 28/246 (11%)
Query: 212 WD--SYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAE 269
WD S W + N TL TSI+PVDLN + K ME + ++ GDN A
Sbjct: 281 WDFSSRW-MDNPQQLNTLRTTSIVPVDLNSLMFK-------MEKILARASKAAGDNAMAN 332
Query: 270 SFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKXXXXXXXXXXXXXVPIW 329
+ A AR+ I+ WN++ G + DY + K P++
Sbjct: 333 QYETLANARQKGIEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLY 380
Query: 330 IDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKS 389
++ D + + LL G+ T+ +SG+QWD PNGWAPLQ + EGL
Sbjct: 381 VNAAAKDRA---NKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNY 437
Query: 390 GSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGV 449
G K +A DI+ ++ Y + EKY+V G GGGGEY Q GFGW+NGV
Sbjct: 438 GQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGV 494
Query: 450 VLAFLE 455
L L+
Sbjct: 495 TLKMLD 500
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 205 RFREVYYWDSYWVI 218
RFREVYYWDSY+ +
Sbjct: 122 RFREVYYWDSYFTM 135
>pdb|2JF4|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Validoxylamine
Length = 535
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 106/236 (44%), Gaps = 25/236 (10%)
Query: 220 NTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARK 279
N TL TSI+PVDLN K E + ++ GDN A + A AR+
Sbjct: 290 NPQQLNTLRTTSIVPVDLNSLXFK-------XEKILARASKAAGDNAXANQYETLANARQ 342
Query: 280 AAIDSVFWNEENGQWLDYWISNGTSSQECQRWKXXXXXXXXXXXXXVPIWIDLFNSDTCI 339
I+ WN++ G + DY + K P++++ D
Sbjct: 343 KGIEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA- 389
Query: 340 VEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQ 399
+ + LL G+ T+ +SG+QWD PNGWAPLQ + EGL G K +A
Sbjct: 390 --NKXATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAX 444
Query: 400 DIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 455
DI+ ++ Y + EKY+V G GGGGEY Q GFGW+NGV L L+
Sbjct: 445 DISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKXLD 500
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 205 RFREVYYWDSYWV 217
RFREVYYWDSY+
Sbjct: 122 RFREVYYWDSYFT 134
>pdb|3CIH|A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From
Bacteroides Thetaiotaomicron
Length = 739
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 242 LKVKVCAFLMELDIVSM-AQIVGDNKTAESFLKAAQARKAAIDSVFWNEE 290
L + F L+ ++ A +VGD + + K A A KA ++ FWN +
Sbjct: 453 LSFEQVLFCRSLETXALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQ 502
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 349 SSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSG 390
S G L + L +S W GW PL H + EG G +
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 349 SSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSG 390
S G L + L +S W GW PL H + EG G +
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 349 SSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSG 390
S G L + L +S W GW PL H + EG G +
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
>pdb|4HZN|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 333
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 106 FHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWA 165
F++ PR+ GS+ + +F ++ G+ DLV + PP F DG PQ+ A A
Sbjct: 138 FYERPRD--GSLYVENFNRWVTRSAPGSNEDLVKSSPPGF--RNDGL------PQLPA-A 186
Query: 166 LEVHALWKNLSRRVSCSVLDRPEFH 190
A+++ + LD P F
Sbjct: 187 YSPRAVYREARTAHTFRALDEPGFR 211
>pdb|4HZP|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 318
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 106 FHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWA 165
F++ PR+ GS+ + +F ++ G+ DLV + PP F DG PQ+ A A
Sbjct: 123 FYERPRD--GSLYVENFNRWVTRSAPGSNEDLVKSSPPGF--RNDGL------PQLPA-A 171
Query: 166 LEVHALWKNLSRRVSCSVLDRPEFH 190
A+++ + LD P F
Sbjct: 172 YSPRAVYREARTAHTFRALDEPGFR 196
>pdb|4HZO|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 318
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 106 FHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWA 165
F++ PR+ GS+ + +F ++ G+ DLV + PP F DG PQ+ A A
Sbjct: 123 FYERPRD--GSLYVENFNRWVTRSAPGSNEDLVKSSPPGF--RNDGL------PQLPA-A 171
Query: 166 LEVHALWKNLSRRVSCSVLDRPEFH 190
A+++ + LD P F
Sbjct: 172 YSPRAVYREARTAHTFRALDEPGFR 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,505,722
Number of Sequences: 62578
Number of extensions: 566553
Number of successful extensions: 1366
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 17
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)