Query 037772
Match_columns 472
No_of_seqs 257 out of 1070
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02567 alpha,alpha-trehalase 100.0 1E-119 3E-124 972.1 31.8 401 60-467 2-554 (554)
2 PRK13272 treA trehalase; Provi 100.0 6E-105 1E-109 849.6 30.9 342 69-462 45-541 (542)
3 PRK13270 treF trehalase; Provi 100.0 1E-104 2E-109 849.6 28.7 340 70-460 56-549 (549)
4 PRK13271 treA trehalase; Provi 100.0 5E-104 1E-108 848.5 30.0 340 70-460 45-539 (569)
5 PF01204 Trehalase: Trehalase; 100.0 5E-104 1E-108 848.3 12.4 352 85-458 3-512 (512)
6 KOG0602 Neutral trehalase [Car 100.0 1.7E-97 4E-102 788.6 18.6 375 70-464 43-571 (600)
7 COG1626 TreA Neutral trehalase 100.0 3E-73 6.5E-78 593.3 20.4 340 71-461 56-556 (558)
8 PRK10137 alpha-glucosidase; Pr 100.0 1.4E-36 3.1E-41 335.3 18.0 207 230-459 573-785 (786)
9 PF03200 Glyco_hydro_63: Manno 100.0 3.2E-28 6.9E-33 272.7 15.7 214 230-457 553-801 (801)
10 KOG2161 Glucosidase I [Carbohy 99.9 1.6E-21 3.5E-26 209.6 15.4 237 207-457 562-847 (849)
11 COG3408 GDB1 Glycogen debranch 99.3 1.8E-11 4E-16 135.2 11.4 189 231-457 413-607 (641)
12 PF06202 GDE_C: Amylo-alpha-1, 99.3 6.2E-11 1.3E-15 123.6 13.7 190 230-451 161-369 (370)
13 PF05592 Bac_rhamnosid: Bacter 98.7 1.8E-08 4E-13 108.7 6.6 164 237-457 276-445 (509)
14 TIGR01577 oligosac_amyl oligos 98.5 3.3E-06 7.1E-11 93.8 16.5 188 238-456 416-612 (616)
15 TIGR01561 gde_arch glycogen de 98.3 1.9E-06 4.1E-11 94.7 9.1 128 233-379 424-567 (575)
16 TIGR01531 glyc_debranch glycog 97.7 0.00018 4E-09 84.9 11.3 203 230-455 1218-1462(1464)
17 COG3387 SGA1 Glucoamylase and 97.3 0.003 6.6E-08 70.4 13.2 177 251-459 425-606 (612)
18 PF04685 DUF608: Protein of un 97.2 0.00061 1.3E-08 71.4 6.1 141 251-406 175-330 (365)
19 PF12899 Glyco_hydro_100: Alka 97.1 0.0049 1.1E-07 65.0 12.3 120 319-453 291-429 (436)
20 TIGR01535 glucan_glucosid gluc 95.8 0.36 7.8E-06 54.4 17.1 199 251-459 411-634 (648)
21 PLN02973 beta-fructofuranosida 95.2 0.38 8.1E-06 52.4 13.9 119 318-451 399-536 (571)
22 PLN02703 beta-fructofuranosida 93.2 1.3 2.8E-05 48.7 12.9 119 318-451 431-568 (618)
23 PLN03005 beta-fructofuranosida 93.1 1.4 3.1E-05 47.9 12.9 119 318-451 378-515 (550)
24 KOG2119 Predicted bile acid be 93.0 0.75 1.6E-05 51.7 10.8 49 251-302 633-681 (879)
25 PF06824 DUF1237: Protein of u 92.5 0.46 1E-05 50.7 8.2 179 238-454 232-422 (424)
26 COG3459 Cellobiose phosphoryla 90.2 1.6 3.5E-05 50.7 9.9 135 250-403 765-920 (1056)
27 COG3538 Uncharacterized conser 89.2 5.8 0.00013 41.6 12.2 176 251-457 238-422 (434)
28 PF00723 Glyco_hydro_15: Glyco 85.3 11 0.00024 40.3 12.5 185 251-453 193-446 (448)
29 COG4354 Predicted bile acid be 76.5 76 0.0016 35.7 14.7 135 254-410 521-679 (721)
30 cd00249 AGE AGE domain; N-acyl 75.6 41 0.00088 34.7 12.3 168 237-426 172-353 (384)
31 cd00249 AGE AGE domain; N-acyl 69.9 84 0.0018 32.3 13.1 43 251-297 58-100 (384)
32 cd02029 PRK_like Phosphoribulo 54.4 36 0.00077 34.7 6.6 160 16-206 59-261 (277)
33 COG4607 CeuA ABC-type enteroch 48.0 12 0.00026 38.5 2.1 68 199-284 121-188 (320)
34 COG3537 Putative alpha-1,2-man 46.9 21 0.00047 40.3 4.0 40 251-295 489-528 (768)
35 PF08760 DUF1793: Domain of un 46.7 2.6E+02 0.0057 26.5 12.3 142 252-433 3-153 (171)
36 PF07971 Glyco_hydro_92: Glyco 43.1 11 0.00024 41.5 1.1 43 251-298 243-285 (502)
37 PF13202 EF-hand_5: EF hand; P 37.4 19 0.00042 22.9 1.2 24 103-126 2-25 (25)
38 PF07221 GlcNAc_2-epim: N-acyl 37.0 1.3E+02 0.0028 30.8 7.7 43 251-298 26-68 (346)
39 PF13374 TPR_10: Tetratricopep 29.3 1.1E+02 0.0024 20.2 4.0 32 251-282 4-35 (42)
40 PRK12421 ATP phosphoribosyltra 27.0 33 0.00073 36.4 1.5 35 416-450 279-321 (392)
41 PF00036 EF-hand_1: EF hand; 26.3 48 0.001 21.9 1.6 28 101-128 1-28 (29)
42 COG2942 N-acyl-D-glucosamine 2 25.9 8.5E+02 0.018 26.2 12.4 163 271-450 76-250 (388)
43 PF11724 YvbH_ext: YvbH-like o 25.6 45 0.00098 26.4 1.6 28 396-423 29-58 (61)
44 PF12652 CotJB: CotJB protein; 23.5 55 0.0012 27.0 1.8 69 74-149 2-74 (78)
45 smart00685 DM14 Repeats in fly 23.4 1.7E+02 0.0036 23.0 4.4 32 253-284 12-43 (59)
46 TIGR00443 hisZ_biosyn_reg ATP 21.6 47 0.001 33.9 1.4 22 416-437 264-285 (314)
47 PRK12292 hisZ ATP phosphoribos 21.2 41 0.00089 35.5 0.9 36 416-451 272-315 (391)
48 PF03475 3-alpha: 3-alpha doma 21.2 60 0.0013 23.7 1.5 37 237-280 7-43 (47)
No 1
>PLN02567 alpha,alpha-trehalase
Probab=100.00 E-value=1.2e-119 Score=972.12 Aligned_cols=401 Identities=67% Similarity=1.173 Sum_probs=380.6
Q ss_pred CCCCCchhhHHhcchhhhhhhccCCC-CCCCCCCCCCCCCHHHHHHHHhcCCcCC-CCCCChHHHHHHHHhcCCCCCCCC
Q 037772 60 VPTTPLVTFLERVQESALATFGQKDF-DPKLYVDLSLKFDLSAIVTAFHKLPRNA-TGSVSIPDFKEFMHEYFDGAGNDL 137 (472)
Q Consensus 60 ~~~~~~~~~~~~c~g~lL~~vq~~~F-DsKtFVD~~~k~~~~~il~~f~~l~~~~-~~~~~~~~L~~FV~~~F~~~g~el 137 (472)
.++++|++||+||||++|++||+++| ||||||||+||++|++||++|++++... ++++++++|++||++||+.||+||
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~v~~~~f~DsKtfvD~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~l~~Fv~~~F~~~g~~l 81 (554)
T PLN02567 2 VPTTPLLTFLVRVQSTALASFGGEDTFDPKLYVDLPLKFSLSETEKAFDALPRSNINGSVPVEELEEFVAEYFDVAGSDL 81 (554)
T ss_pred CCccchHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCCHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCCccc
Confidence 57899999999999999999999998 9999999999999999999999998765 567899999999999999999999
Q ss_pred ccCCCCCCCCCCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEE
Q 037772 138 VYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWV 217 (472)
Q Consensus 138 ~~~~p~d~~~~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwi 217 (472)
++|+|+||+++|++||++|+|+++|+||++||+||++|+|+++++|.++|++|||||||||||||||||||+||||||||
T Consensus 82 ~~~~~~d~~~~p~~~l~~i~~~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~sli~lp~p~iVPGgRFrE~yyWDSy~i 161 (554)
T PLN02567 82 LPYTPPDFVPEPPGFLPKVENPEAREWALKVHSLWKNLARKVSDSVEERPDRHTLLPLPNPVVVPGSRFREVYYWDSYWV 161 (554)
T ss_pred ccCCccccccCcHhHhhhcCChHHHHHHHHHHHHHHHhccccCcccccCCCcCCcccCCCCeEccCCCcCccchHHHHHH
Confidence 99999999999977999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee------------------------------------------------------------------------------
Q 037772 218 IR------------------------------------------------------------------------------ 219 (472)
Q Consensus 218 i~------------------------------------------------------------------------------ 219 (472)
|+
T Consensus 162 ~~GLl~s~~~~~A~~mi~Nf~~~i~~~GfIPNg~R~Yyl~RSQPPlla~mV~~~~~~t~d~~~l~~~lp~L~~E~~~W~~ 241 (554)
T PLN02567 162 IRGLLASKMYETAKGVVENLLYLVDTYGFVPNGARAYYTNRSQPPLLSAMVLAVYAATKDVELVRRALPALLKEHAFWTS 241 (554)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCcCCCCCcccccCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 98
Q ss_pred -----------------------------------------------------------------------cCCCccccc
Q 037772 220 -----------------------------------------------------------------------NTSDFTTLA 228 (472)
Q Consensus 220 -----------------------------------------------------------------------d~~~L~si~ 228 (472)
|..+|++|+
T Consensus 242 ~~~~v~i~~~~g~~~~L~rY~~~~~~PrpEsyreD~~~a~~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~ti~ 321 (554)
T PLN02567 242 GRHTVTIRDANGVVHVLSRYYAMWDKPRPESSRIDKEVASKFSSSSEKQQLYRDIASAAESGWDFSSRWMRDGSNLTTLR 321 (554)
T ss_pred CCcceeeecCCCCcCCCcccccCCCCCCCccccccHHHHhcCCCchHHHHHHHHHHHHHHcCCCchhhhccccccccccc
Confidence 566799999
Q ss_pred ccccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcc-cc
Q 037772 229 ITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSS-QE 307 (472)
Q Consensus 229 t~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~-~~ 307 (472)
|+.|+|||||||||+ ++++||+|++.+|+.+++++|+++|+++++||+++|||+++|+|+|||+.+++.+ ..
T Consensus 322 t~~i~pVDLNa~L~~-------~e~~LA~la~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~ 394 (554)
T PLN02567 322 TTSILPVDLNAFLLK-------MELDIAFFAKLLGDKATAERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQE 394 (554)
T ss_pred cccccCccHHHHHHH-------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCcccCeEEeeccccccccccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999887532 12
Q ss_pred hhhhhccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHh
Q 037772 308 CQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLG 387 (472)
Q Consensus 308 ~~~~~~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~ 387 (472)
.+.|....+++.+++++|+|||+|++++++.++.+++++|++++++.|||||||+.+||||||+||+|||+|||+++||+
T Consensus 395 ~~~~~~~~~~~~~~~s~f~PLw~g~~~~~~~~a~~v~~~l~~~~l~~pgGiptsl~~sg~qWdgPn~W~pl~~l~i~GL~ 474 (554)
T PLN02567 395 SYTWDAENQNTNVYASNFVPLWCGVVPPGDAKVEKVVESLKSSGLVLPAGIATSLRNTGQQWDFPNAWAPLQHMIVEGLA 474 (554)
T ss_pred cccccccccccCccHHHHHHHHcCCCChhhHHHHHHHHHHHhccCccCCcccCCCCCccccCCCCCcCHhHHHHHHHHHH
Confidence 34455555678899999999999999986567899999998878888999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCCCCCCCCCC
Q 037772 388 KSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGC 467 (472)
Q Consensus 388 ~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~~~~~~~c 467 (472)
+||+.+|+++|++||+|||++++++|.++|.|+|||||.++++.||||||++|+||||||||+|+|+++||++.+++++|
T Consensus 475 ~yG~~ea~~lA~~la~rwl~~~~~~~~~tg~m~EkYd~~~~~~~GgGGey~~q~GFGWTngV~L~ll~~yg~~~~~~~~~ 554 (554)
T PLN02567 475 ASGSKEGKALAEDIARRWLRSNYVAYKKTGAMHEKYDARYCGEVGGGGEYIPQTGFGWSNGVVLSLLEEFGWPEDKKLDC 554 (554)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHhcCceEEeECCCCccccCCCCCCCCCCCcChHHHHHHHHHHHhCCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PRK13272 treA trehalase; Provisional
Probab=100.00 E-value=5.9e-105 Score=849.60 Aligned_cols=342 Identities=31% Similarity=0.554 Sum_probs=317.9
Q ss_pred HHhcchhhhhhhccCC-C-CCCCCCCCCCCCCHHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccCCCCCCC
Q 037772 69 LERVQESALATFGQKD-F-DPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFV 146 (472)
Q Consensus 69 ~~~c~g~lL~~vq~~~-F-DsKtFVD~~~k~~~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d~~ 146 (472)
.+||+|+||++||+++ | ||||||||++|++|++||++|++++. .++++|++||++||+.||.|++.+.
T Consensus 45 p~~~~g~Ll~~Vq~a~lf~DsKtFvD~~~~~~p~~il~~~~~~~~-----~~~~~l~~Fv~~~F~~~~~e~~~~~----- 114 (542)
T PRK13272 45 PDLAYPELFQAVQEGELFDDQKHFVDALPLRDPALINADYLAQHE-----HPGFDLRKFVDANFEESPPVQTDAI----- 114 (542)
T ss_pred hhhhhhHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHhccC-----CcHHHHHHHHHHhCCCCCccccccC-----
Confidence 3599999999999999 9 99999999999999999999998753 5799999999999999999987542
Q ss_pred CCCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEEEe-------
Q 037772 147 PEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIR------- 219 (472)
Q Consensus 147 ~~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwii~------- 219 (472)
++|+.+| ++||+||++|+|++++ +|+++||||||||||||||||||+|||||||||+
T Consensus 115 ---------~~d~~~~---~~i~~lW~~L~R~~~~----~~~~~Sli~lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~ 178 (542)
T PRK13272 115 ---------RQDTALR---EHIDALWPKLVRSQEQ----VPAHSSLLALPHPYVVPGGRFREVYYWDSYFTMLGLVKSGQ 178 (542)
T ss_pred ---------CCCHHHH---HHHHHHHHHhccccCC----CCCcCccccCCCCeeecCCCccchhhhHHHHHHHhhhhcCc
Confidence 2456666 7999999999999864 6899999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 037772 220 -------------------------------------------------------------------------------- 219 (472)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (472)
T Consensus 179 ~~~a~~mi~Nf~~~i~~yGfIPNG~R~YYl~RSQPP~l~~Mv~~~~~~t~d~~~~~~lp~l~kEy~~Wm~~~~~~~~~~~ 258 (542)
T PRK13272 179 TTLSRQMLDNFAYLIDTYGHIPNGNRTYYLSRSQPPFFSYMVELQAGVEGDAAYQRYLPQLQKEYAYWMQGSDDLQPGQA 258 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCcCcCCchhccccCCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCCCCCCCccc
Confidence
Q ss_pred ------------------------------------------------------------------cCCCcccccccccc
Q 037772 220 ------------------------------------------------------------------NTSDFTTLAITSIL 233 (472)
Q Consensus 220 ------------------------------------------------------------------d~~~L~si~t~~Ii 233 (472)
|+.+|++|+|+.|+
T Consensus 259 ~~~~v~~~~g~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~Y~~l~a~aESGWDfSsRw~~~~~~L~~i~t~~Iv 338 (542)
T PRK13272 259 ARHVVRLADGSLLNRYWDERDTPRPEAWLHDTRTAAEAKDRPAAEVYRDLRAGAESGWDYSSRWLADGKTLASIRTTAIV 338 (542)
T ss_pred cceeEecCCCcchhhhcCCCCCCCChHHHHHHHHhcCcccCcHHHHHHHHHHHHhcCCCchhhhccccccccccCccccc
Confidence 55789999999999
Q ss_pred cccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhc
Q 037772 234 PVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKA 313 (472)
Q Consensus 234 PVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~ 313 (472)
|||||||||+ ++++||++++.+|+.+++++|+++|++|++||+++|||| +|+|+|||+++++
T Consensus 339 pVDLNalL~~-------~e~~LA~~~~~lG~~~~a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~---------- 400 (542)
T PRK13272 339 PVDLNSLLYH-------LERTLAQACASSGLAACSQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRT---------- 400 (542)
T ss_pred CccHHHHHHH-------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCC----------
Confidence 9999999999 999999999999999999999999999999999999998 8999999999885
Q ss_pred cCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChh
Q 037772 314 SNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHE 393 (472)
Q Consensus 314 ~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~e 393 (472)
+++.+++++|+|||+|++++ +++++++++++. .++.+|||||++.+||||||+||+|||+|||+++||++||+.
T Consensus 401 --~~~~~s~a~f~PLwag~a~~--~~a~~l~~~l~~-~~l~~gGlpTt~~~sgqQWD~PN~WaPlq~i~i~GL~~yG~~- 474 (542)
T PRK13272 401 --LSEQVTAAALYPLFAGLASD--DRAKRTADSVRA-QLLRPGGLATTALKTGQQWDEPNGWAPLQWVAVDGLRRYGED- 474 (542)
T ss_pred --ccccccHHHHHHHHcCCCCH--HHHHHHHHHHHH-hccCCCCcCCCCCCccccCCCCCccHhHHHHHHHHHHHcCCH-
Confidence 67789999999999999996 578889998874 566899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCCCCC
Q 037772 394 AKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPAD 462 (472)
Q Consensus 394 a~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~~~ 462 (472)
++|++||+||+++++++|.++|+|+||||++..+..|+||||++|+||||||||+|+||++||+...
T Consensus 475 --~lA~~La~rwl~~~~~~~~~~g~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNgV~L~lL~~yg~~~~ 541 (542)
T PRK13272 475 --ALARTIGERFLAQVQALFAREHKLVEKYGLDGNAAGGGGGEYALQDGFGWTNGVTLMLLNLYPPGGA 541 (542)
T ss_pred --HHHHHHHHHHHHHHHHHHhhcCceeEEeecCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHhccccC
Confidence 4999999999999999999999999999998877788999999999999999999999999998643
No 3
>PRK13270 treF trehalase; Provisional
Probab=100.00 E-value=1.1e-104 Score=849.62 Aligned_cols=340 Identities=32% Similarity=0.605 Sum_probs=317.6
Q ss_pred HhcchhhhhhhccCC-C-CCCCCCCCCCCCCHHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccCCCCCCCC
Q 037772 70 ERVQESALATFGQKD-F-DPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVP 147 (472)
Q Consensus 70 ~~c~g~lL~~vq~~~-F-DsKtFVD~~~k~~~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d~~~ 147 (472)
++|.|+||++||+++ | ||||||||++|++|++||++|++++. .++++|++||++||..|+. +|+||++
T Consensus 56 ~~~~g~Ll~~Vq~~~lf~DsKtfvD~~~~~~p~~il~~f~~~~~-----~~~~~l~~Fv~~~F~~p~~-----~~~~~~~ 125 (549)
T PRK13270 56 ADRYLELFEHVQSSKIFPDSKTFPDCAPKMDPLDILIRYRKVRR-----HRDFDLRKFVENHFWLPEV-----YSSEYVS 125 (549)
T ss_pred hhhhHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHccc-----CCHHHHHHHHHHhCCCCCC-----Ccccccc
Confidence 589999999999999 9 99999999999999999999999974 5789999999999998864 4678998
Q ss_pred CCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEEEe--------
Q 037772 148 EPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIR-------- 219 (472)
Q Consensus 148 ~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwii~-------- 219 (472)
+|. .+|+++||.||++|+|++++ +|++|||||||||||||||||||+|||||||||+
T Consensus 126 ~p~-----------~~~~~~i~~lW~~L~R~~~~----~~~~~Sli~lp~p~iVPGGRFrE~YYWDSYwi~~GLl~sg~~ 190 (549)
T PRK13270 126 DPQ-----------NSLKEHIDQLWPVLTREPQD----HIPWSSLLALPQSYIVPGGRFSETYYWDSYFTMLGLAESGRE 190 (549)
T ss_pred CHH-----------HHHHHHHHHHhHHhcccccC----CCCcCccccCCCCeEecCCCcccchhhhHHHHHHHhhhcCcH
Confidence 883 28999999999999999864 5889999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 037772 220 -------------------------------------------------------------------------------- 219 (472)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (472)
T Consensus 191 ~~a~~mi~Nf~~li~~yGfIPNG~R~YYl~RSQPP~l~~Mv~~y~~~~~~~~~~~lp~l~~E~~fWm~~~~~~~~~~~~~ 270 (549)
T PRK13270 191 DLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYR 270 (549)
T ss_pred HHHHHHHHHHHHHHHHcCcCcCCchhccccCCCCHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCccCcccccc
Confidence
Q ss_pred ---------------------------------------------------------------cCCCccccccccccccc
Q 037772 220 ---------------------------------------------------------------NTSDFTTLAITSILPVD 236 (472)
Q Consensus 220 ---------------------------------------------------------------d~~~L~si~t~~IiPVD 236 (472)
|..+|++|+|+.|+|||
T Consensus 271 ~~v~~~~g~~L~rY~~~~~~PRpEsyreD~~~a~~~~rp~~~~Y~~lra~aESGWDfSsRW~~~~~~L~~i~T~~iipVD 350 (549)
T PRK13270 271 HVVRMPDGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPID 350 (549)
T ss_pred eeEecCCCCccccccCCCCCCCCchhHHHHHhhcccCCchHHHHHHHHHHHHcCCCchhhcccCCcccccccccCcchhh
Confidence 56679999999999999
Q ss_pred ceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCC
Q 037772 237 LNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQ 316 (472)
Q Consensus 237 LNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~ 316 (472)
||||||+ ++++||++++++|+.+++++|+++|+++++||+++|||+++|+|+|||+++++ +
T Consensus 351 LNaiL~~-------~e~~LA~~a~~lG~~~~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~------------~ 411 (549)
T PRK13270 351 LNAFLYK-------LESAIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ------------L 411 (549)
T ss_pred HHHHHHH-------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc------------c
Confidence 9999999 99999999999999999999999999999999999999999999999998874 3
Q ss_pred CcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhHHH
Q 037772 317 NNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKS 396 (472)
Q Consensus 317 ~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea~~ 396 (472)
+.+++++|+|||+|++++ +++++++++++. +++.+||++||+.+||||||+||+|||+|||+++||++||+. +
T Consensus 412 -~~~s~a~f~PLwaG~a~~--~qa~~l~~~l~~-~ll~pGGl~tS~~~sgqQWD~PN~WaPlqwmiieGL~ryG~~---~ 484 (549)
T PRK13270 412 -ALFSAAAIVPLYVGMANH--EQADRLANAVRS-RLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDD---L 484 (549)
T ss_pred -ccccHHHHHHHHhCCCCH--HHHHHHHHHHHH-hcccCCCcCCCCCCCcccCCCCCCCccHHHHHHHHHHHcCCH---H
Confidence 568999999999999996 568899999874 677899999999999999999999999999999999999998 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccccCC-CCCCCCCcccCCCCccchHHHHHHHHHHhCCC
Q 037772 397 MAQDIAMRWINTNYVAYKETGAMHEKYNVEKC-GDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 460 (472)
Q Consensus 397 lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~-g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~ 460 (472)
+|++||+|||++++++|.++|+|+|||||.++ +..||||||++|+||||||||+|+||++||++
T Consensus 485 lA~~LA~rwl~~~~~~~~~~g~m~EKYdv~~~~g~~GgGGEY~~q~GFGWTNGV~l~~l~~yg~~ 549 (549)
T PRK13270 485 LGDEIARSWLKTVNQFYQEHHKLIEKYHIAGGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549 (549)
T ss_pred HHHHHHHHHHHHHHHHHhhcCeeEEEecCCCCCCCCCCCCCcCCCCCcCcHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999875 57889999999999999999999999999973
No 4
>PRK13271 treA trehalase; Provisional
Probab=100.00 E-value=4.8e-104 Score=848.48 Aligned_cols=340 Identities=34% Similarity=0.609 Sum_probs=315.5
Q ss_pred HhcchhhhhhhccCC-C-CCCCCCCCCCCCCHHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccCCCCCCCC
Q 037772 70 ERVQESALATFGQKD-F-DPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVP 147 (472)
Q Consensus 70 ~~c~g~lL~~vq~~~-F-DsKtFVD~~~k~~~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d~~~ 147 (472)
++|+|+||++||+++ | ||||||||++|++|++||++|+..+ ..++++|++||++||..|+ |++.|+|+|+
T Consensus 45 ~~~~g~Ll~~Vq~a~~f~DsKtFvD~~~~~~p~~il~~f~~~~-----~~~~~~l~~Fv~~~F~~p~-e~~~~~~~~~-- 116 (569)
T PRK13271 45 DILLGPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQ-----NQSGFDLRHFVNVNFTLPK-EGEKYVPPEG-- 116 (569)
T ss_pred hhhhhHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHhcc-----CCCHHHHHHHHHHhCCCCc-cccccCCCcc--
Confidence 499999999999999 9 9999999999999999999997653 2688999999999999996 7888887663
Q ss_pred CCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEEEe--------
Q 037772 148 EPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIR-------- 219 (472)
Q Consensus 148 ~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwii~-------- 219 (472)
+.++++||+||++|+|+++++ +++|||||||||||||||||||+|||||||||+
T Consensus 117 --------------~~~~~~i~~lW~~L~R~~~~~----~~~~sli~lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~~ 178 (569)
T PRK13271 117 --------------QSLREHIDGLWPVLTRSTENT----EKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHW 178 (569)
T ss_pred --------------HHHHHHHHHHHHHhcCcCCCC----CCCCceecCCCCeEecCCCcchhhhhHHHHHHHhhHhcCCH
Confidence 234579999999999999765 458999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 037772 220 -------------------------------------------------------------------------------- 219 (472)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (472)
T Consensus 179 ~~a~~mi~Nf~~~i~~yG~IPNg~R~YYl~RSQPP~l~~Mv~~~~~~~~~~~l~~~lp~l~kEy~~Wm~~~~~~~~~~~~ 258 (569)
T PRK13271 179 DKVADMVANFAHEIDTWGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAYWMEGVENLQPGQQE 258 (569)
T ss_pred HHHHHHHHHHHHHHHHhCcCcCCchhhcccCCCChhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhCCCcccCccccc
Confidence
Q ss_pred -----------------------------------------------------------------cCCCccccccccccc
Q 037772 220 -----------------------------------------------------------------NTSDFTTLAITSILP 234 (472)
Q Consensus 220 -----------------------------------------------------------------d~~~L~si~t~~IiP 234 (472)
|+.+|++|+|++|+|
T Consensus 259 ~r~v~~~~~~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~~i~t~~IiP 338 (569)
T PRK13271 259 KRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTIRTTSIVP 338 (569)
T ss_pred cceEEeCCCCcccccccCCCCCCCCcHHHHHHHHhhCCcchHHHHHHHHHHHhhcCCcchhhhccCCccccccccccccC
Confidence 677899999999999
Q ss_pred ccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhcc
Q 037772 235 VDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKAS 314 (472)
Q Consensus 235 VDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~ 314 (472)
||||||||+ ++++||++++++|+.+++++|+++|+++++||+++||||+.|.|+|||+.+++
T Consensus 339 VDLNALLy~-------ae~~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~----------- 400 (569)
T PRK13271 339 VDLNALMFK-------MEKILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK----------- 400 (569)
T ss_pred chHHHHHHH-------HHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC-----------
Confidence 999999999 99999999999999999999999999999999999999999999999998774
Q ss_pred CCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhH
Q 037772 315 NQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEA 394 (472)
Q Consensus 315 ~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea 394 (472)
+++.+++++|+|||+|++++ +++++|++.+. ++++.+|||||+..+||||||+||+|||+|||+++||++||+.+
T Consensus 401 -~r~~~saa~f~PLwag~a~~--~qA~~Vv~~l~-~~Ll~pgGLpTt~~~SgqQWD~PngWaPlq~iiieGL~~yG~~~- 475 (569)
T PRK13271 401 -VRNQLTAAALFPLYVNAAAK--DRANKVAAATK-THLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKE- 475 (569)
T ss_pred -EeechhHHHHHhhhcCCCCH--HHHHHHHHHHH-HhcCCCCCccCCCCCCCCCCcCcccCHhHHHHHHHHHHHcCCHH-
Confidence 55678999999999999985 57888998876 47778999999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCCC
Q 037772 395 KSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 460 (472)
Q Consensus 395 ~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~ 460 (472)
+|++||+|||++++++|.++|+|+|||||...|..||||||++|+||||||||+|+||+.|+..
T Consensus 476 --lA~~la~rwl~~~~~~~~~~g~m~EKYd~~~~G~~gGGGeY~~q~GFGWTNgV~L~lL~~~~~~ 539 (569)
T PRK13271 476 --VAMDVTWRFLTNVQHTYDREKKLVEKYDVSSTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPK 539 (569)
T ss_pred --HHHHHHHHHHHHHHHHhcccCceEEeeCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999987778899999999999999999999999999864
No 5
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=100.00 E-value=4.9e-104 Score=848.25 Aligned_cols=352 Identities=43% Similarity=0.846 Sum_probs=263.3
Q ss_pred C-CCCCCCCCCCCCCHHHHHHHHhcCCcCC-CCCCChHHHHHHHHhcCCCCCCCCccCCCCCCCCCCcCcCCCCCChhHH
Q 037772 85 F-DPKLYVDLSLKFDLSAIVTAFHKLPRNA-TGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVR 162 (472)
Q Consensus 85 F-DsKtFVD~~~k~~~~~il~~f~~l~~~~-~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d~~~~p~~fl~~I~d~~~r 162 (472)
| ||||||||++|.+|++|+++|+++...+ ++.+++++|++||++||..||.||++|+|+||+++|+.||++|.|+++|
T Consensus 3 f~d~k~fvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~f~~~G~el~~~~~~d~~~~~~~~~~~i~~~~~~ 82 (512)
T PF01204_consen 3 FPDSKTFVDMPMKNDPDEILAAFKKLFWNTLTRNISKFDLKQFVEDHFDEPGSELEPWTPPDWKEDPPYFLSRISDPELR 82 (512)
T ss_dssp SSSTHHHHT-EESS-HHHHHHHHHHHHTS------TT--HHHHHHHHEE------------S------------TT--HH
T ss_pred CCCCCeeeCCCCCCCHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhCcCccccccccCCcccCCCCccccccCCCchhh
Confidence 8 9999999999999999999999998654 5668999999999999999999999999999999996699999999999
Q ss_pred HHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEEEe-----------------------
Q 037772 163 AWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIR----------------------- 219 (472)
Q Consensus 163 ~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwii~----------------------- 219 (472)
+||.+||++|+.|+|+++++|.++|+++||||||||||||||||||+|||||||||+
T Consensus 83 ~~~~~l~~~W~~l~r~~~~~~~~~~~~~sli~lp~p~iVPGGRF~E~YyWDSYfi~~GLl~s~~~~~a~~mi~Nf~~~i~ 162 (512)
T PF01204_consen 83 KWAQHLHQLWKDLGRKIKPDVKDNPERYSLIPLPNPYIVPGGRFREMYYWDSYFIILGLLASGMYETAKGMIENFLYLID 162 (512)
T ss_dssp ---HHHHHHTTTTEE------SS--TT-SB---SS-EE--BTTB-S-BHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCchheeeccCCccccccccccccCCCCeEeeCCCcccchhHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 037772 220 -------------------------------------------------------------------------------- 219 (472)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (472)
T Consensus 163 ~yGfipNg~R~Yyl~RSQPPlla~mV~~~y~~t~d~~~l~~~lp~L~ke~~fW~~~~r~~~~~~~~~~~~l~ry~~~~~~ 242 (512)
T PF01204_consen 163 RYGFIPNGNRTYYLNRSQPPLLAQMVREYYEATKDKAFLREALPALEKEYEFWMDNNRDVRVTGLGKGYGLNRYGDPWNS 242 (512)
T ss_dssp HHSS--SBSBGGGTT---S--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCCEEETTEEEECTSEECCHHHHCHHC
T ss_pred HhCcCCCCccHHhccCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCCCcceeecCCCccCCcccccCCCCC
Confidence
Q ss_pred -------------------------------------------------cCCCcccccccccccccceeeeeeccchhhH
Q 037772 220 -------------------------------------------------NTSDFTTLAITSILPVDLNIFILKVKVCAFL 250 (472)
Q Consensus 220 -------------------------------------------------d~~~L~si~t~~IiPVDLNa~L~~~~~~~~~ 250 (472)
|...|.+++|++|+|||||||||+
T Consensus 243 prpEsy~eD~~~a~~~~~~~~~~~~y~~i~saaESGwDfssRw~~~sg~d~~~l~~~~t~~iipVDLNa~L~~------- 315 (512)
T PF01204_consen 243 PRPESYREDVETAENFPSERDKEELYRDIASAAESGWDFSSRWFRDSGFDNSNLFTIRTTDIIPVDLNAILYR------- 315 (512)
T ss_dssp T-CCCCCHHHHHHHCHCHTSTCHHHHCHHHHHHHCCHHCTGGGBSSECCEE-TCHHCECCCEE-HHHHHHHHH-------
T ss_pred CcchHHHhhHHHHHhhcccchHHHHhhcccchhhhhhhccceeeecCCCchhhhhccceeeecCchHHHHHHH-------
Confidence 234589999999999999999999
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCCCcccchhcHHHHhh
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWI 330 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~~~~~~s~~~PLw~ 330 (472)
++++||+|++++|+.++|+.|+++|++|+++|+++||||++|+|+|||+.+++ +++.+++++|+|||+
T Consensus 316 ~e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~------------~~~~~~~a~f~PL~a 383 (512)
T PF01204_consen 316 NEKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGK------------RSPVFSPANFLPLWA 383 (512)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTE------------EGG--BGGGGHHHHT
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCC------------CcccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998874 677899999999999
Q ss_pred cCCCCch--HHHHHHHHHHHhCCCCc-cccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 037772 331 DLFNSDT--CIVEKVRKSFQSSGLLG-AAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWIN 407 (472)
Q Consensus 331 g~~~~~~--~~a~~vv~~L~~~~~l~-~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea~~lA~~Ia~rwl~ 407 (472)
|++++++ ..+.++++.++..+++. ++|+|+|+..||||||+||+|||+|||+++||++||+. ++|++||+|||+
T Consensus 384 g~a~~~qa~~~~~~~l~~~~~~~~l~~~~g~~ts~~~~~~qWD~Pn~WaPlq~~~i~GL~~yG~~---~lA~~la~rwl~ 460 (512)
T PF01204_consen 384 GIASPEQAERLVARALDYLERSGLLTFPGGIPTSLYDTGQQWDGPNVWAPLQWMAIEGLRRYGYR---ELARRLAQRWLR 460 (512)
T ss_dssp T-S-HHHHHHHHHHHHHHCTTCCSSC-CSECTTCTTTTTSTTSTTEEEHHHHHHHHHHHHHTT-H---HHHHHHHHHHHH
T ss_pred hhcCHhhhhhHHHHHHHHHHhcCCcccCCCCCCccccccccCCCCCccHhHHHHHHHHHHhCCcH---HHHHHHHHHHHH
Confidence 9999642 12355666666667664 99999999999999999999999999999999999997 599999999999
Q ss_pred HHHHHHHhcCcccccccccCCCCCC-CCCcccCCCCccchHHHHHHHHHHhC
Q 037772 408 TNYVAYKETGAMHEKYNVEKCGDIG-GGGEYIPQTGFGWSNGVVLAFLEEFG 458 (472)
Q Consensus 408 ~~~~~~~~tG~m~EKYd~~~~g~~G-gGGEY~~Q~GFGWTNgVvL~ll~~yg 458 (472)
+++++|.++|+|||||||.+++..| |||||++|+||||||||+|+||++||
T Consensus 461 ~~~~~~~~~g~m~EKYd~~~~~~~gg~gGeY~~q~GFGWTNgv~l~~l~~yg 512 (512)
T PF01204_consen 461 LNYKVFKRTGKMFEKYDVEDGGEPGGGGGEYPVQDGFGWTNGVYLDLLDKYG 512 (512)
T ss_dssp HHHHCCCCCSSEBSEEETTTTSCEC-S-SSS---BS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHhhcCchhccccceeccccCCCCCcccCCCCCccHHHHHHHHHHhhC
Confidence 9999999999999999999887766 99999999999999999999999997
No 6
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-97 Score=788.60 Aligned_cols=375 Identities=39% Similarity=0.768 Sum_probs=355.7
Q ss_pred HhcchhhhhhhccCC-C-CCCCCCCCCCCCC--HHHHHHHHhcCCc-CCCCCCChHHHHHHHHhcCCCCCCCCccCCCCC
Q 037772 70 ERVQESALATFGQKD-F-DPKLYVDLSLKFD--LSAIVTAFHKLPR-NATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPD 144 (472)
Q Consensus 70 ~~c~g~lL~~vq~~~-F-DsKtFVD~~~k~~--~~~il~~f~~l~~-~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d 144 (472)
+||.|.+|++||+++ | |+|+||||+++.+ +..++++|+++.. ..+.+++.+.|++||++||+.||.|++.|+|.|
T Consensus 43 iyc~~~lL~~~~~~k~~~d~k~fvd~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fv~e~fd~pg~el~~~~P~d 122 (600)
T KOG0602|consen 43 IYCEGNLLQSVQIAKLYPDSKIFVDEPLKNEGKPDRLLRTFDELSWSSSTRPVPSEKLQEFVTEYFDAPGKELEIYAPTD 122 (600)
T ss_pred eEeecccccchhhcccCCCchhhhhhhhhccCCcchHHHHHHHhhhhhccCCCCHHHHHHHHHHhccCCCcccccccccc
Confidence 399999999999999 9 9999999999998 9999999999986 346778999999999999999999999999999
Q ss_pred CCCCCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEEEe-----
Q 037772 145 FVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIR----- 219 (472)
Q Consensus 145 ~~~~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwii~----- 219 (472)
|.++|+ |+.+|.|+.+|.||++||.+|+.|+|+++.+|..+|++||+||||||||||||||||+|||||||||+
T Consensus 123 ~~~~p~-~~~~i~~~~~r~~a~el~~~w~~l~~~i~~~v~~~p~~~sli~v~~PfiVPGgRF~E~YyWDsywii~GLl~S 201 (600)
T KOG0602|consen 123 WEEMPS-FLATIADSDVRRLAKELHPEWKKLYRKIAQEVRSNPDRYSLIPVPNPFIVPGGRFRELYYWDSYWIIKGLLAS 201 (600)
T ss_pred cccCcH-HHHhhcchHHHHHHHHhhHHHHhHHHHhhHHHhhCCCcCccccCCCceeccCCceeeeecccHHHHHHhHHhh
Confidence 999995 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 037772 220 -------------------------------------------------------------------------------- 219 (472)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (472)
T Consensus 202 ~m~~takGmieNf~~lV~~yG~ipNg~R~YYl~RSQPPllt~Mv~~~y~~t~~~~~~~~~l~tl~kEy~fw~~~~~~~~~ 281 (600)
T KOG0602|consen 202 QMFDTAKGMIENFISLVDTYGFIPNGGRVYYLNRSQPPLLTGMVYEYYEATNDEQFLKRALPTLIKEYEFWTNNRTEDVK 281 (600)
T ss_pred cccHHHHHHHHHHHHHHHhcCcccCCCeeeeeccCCCchhhhhHHHhhhccCcHHHHHHHHHHHhhheecccCCCccccc
Confidence
Q ss_pred ------------------------------------------------------------cCCCccccccccccccccee
Q 037772 220 ------------------------------------------------------------NTSDFTTLAITSILPVDLNI 239 (472)
Q Consensus 220 ------------------------------------------------------------d~~~L~si~t~~IiPVDLNa 239 (472)
+++++++|+|+.++|||||+
T Consensus 282 ~~~~~l~~y~~~~~~prPEsy~~d~e~~e~~~t~~~~~~~~~~l~~~aesg~DfSsrw~~~~~t~~~~~t~~~vpvDLN~ 361 (600)
T KOG0602|consen 282 DEGKVLSRYRVMGSGPRPESYREDFETAEHLKTEKEKQQLYQDLAAAAESGWDFSSRWFAVNGTLSSIGTTDLVPVDLNL 361 (600)
T ss_pred cCCceeEEEeccCCCCCCcchHHHHHHHhcccchHHHHHHHHHHhhcCcccchhHHHhhccCCcccccccccccccchHH
Confidence 44567999999999999998
Q ss_pred eeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCCCcc
Q 037772 240 FILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNN 319 (472)
Q Consensus 240 ~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~~~ 319 (472)
+|+. ++.+++.++...|+.++++.|++++++|+.||+++||||++|+|+|||+...+ ++..
T Consensus 362 ~~~~-------~~~i~~y~~~~~Gd~~~s~~~~~k~~~r~~~i~~vlWde~~g~w~DYd~~~~~------------~~~~ 422 (600)
T KOG0602|consen 362 LYKW-------NADIMKYFYVVDGDPKDSAQFEKKSEQRRAAIQEVLWDEEDGAWFDYDLELKK------------HNTY 422 (600)
T ss_pred HHHh-------hHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccccc------------cCCC
Confidence 8888 88999999999999999999999999999999999999999999999998774 6778
Q ss_pred cchhcHHHHhhcCCCC--chHHHHHHHHHHHhCCCC-ccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhHHH
Q 037772 320 AFASNFVPIWIDLFNS--DTCIVEKVRKSFQSSGLL-GAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKS 396 (472)
Q Consensus 320 ~~~s~~~PLw~g~~~~--~~~~a~~vv~~L~~~~~l-~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea~~ 396 (472)
+++||++|||+|++++ +...+++++++|+.++.+ +|+|||+|+.+|+||||+||+|||+|+|+++||+++|..++++
T Consensus 423 ~~~sn~~Pl~~~~~~~~~~~~~~~~v~~~le~~g~~~~p~giP~Sl~~s~eQWD~Pn~WaP~q~m~~~gl~~~~~~~~~~ 502 (600)
T KOG0602|consen 423 FYASNFAPLWAGCYPAPDDDKSVDKVLDYLEKSGALTFPGGIPTSLSNSGEQWDFPNGWAPNQHMAIEGLRRAGNQELQE 502 (600)
T ss_pred cCchhhhhhhccCCCcccccchHHHHHHHHHHcCCcCCCCCCcccCCCchhhccCCCCCCcceehhhhhhhhcCCHHHHH
Confidence 9999999999999984 233689999999999954 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccccC-CCCCCCCCcccCCCCccchHHHHHHHHHHhCCCCCCC
Q 037772 397 MAQDIAMRWINTNYVAYKETGAMHEKYNVEK-CGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLK 464 (472)
Q Consensus 397 lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~-~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~~~~~ 464 (472)
+|.+||+|||.+|+++|..+|.|+|||||+. .+..|+||||.+|+||||||||+|++|.+||+.+...
T Consensus 503 ~A~kla~~wl~~~~~~~~~~g~~~EKY~vt~~~~~~G~ggEY~~QeGFGW~Ng~il~~L~~~g~~~~~~ 571 (600)
T KOG0602|consen 503 VALKLAQRWLETNFAVFVDSGGMFEKYDVTRDPGPHGGGGEYEVQEGFGWTNGVILDLLKKYGSDLRRG 571 (600)
T ss_pred HHHHHHHHHHHHhhhhhcccCceeEeeccccCCCCCCCCCccccccCCCccchhHHHHHHHcCCccccc
Confidence 9999999999999999999999999999997 7889999999999999999999999999999988873
No 7
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-73 Score=593.28 Aligned_cols=340 Identities=35% Similarity=0.642 Sum_probs=306.8
Q ss_pred hcchhhhhhhccCC-C-CCCCCCCCCCCCC-HHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccCCCCCCCC
Q 037772 71 RVQESALATFGQKD-F-DPKLYVDLSLKFD-LSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVP 147 (472)
Q Consensus 71 ~c~g~lL~~vq~~~-F-DsKtFVD~~~k~~-~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d~~~ 147 (472)
+.-|+|+++||.++ | |.|||+|..++.. |..++..+...+. .+.++++.||..+|..+...- + +
T Consensus 56 ~~~~~lf~~v~~ak~f~~~k~f~d~~~~~e~p~~~l~~~~~~~~-----~~~~s~r~~v~~~f~~~~~~~-~-----y-- 122 (558)
T COG1626 56 YFYGELFQDVQDAKLFPDHKTFLDEAPSNENPVNILSRYRMEKD-----WPGFSLREFVNNSFFLPESTS-K-----Y-- 122 (558)
T ss_pred hhhHHHHHHHHHHhhcccceecccccccccCchhHHHhhhccCC-----CccccHHHHhhhhccccccCC-c-----C--
Confidence 56677799999988 9 9999999999988 9999999988875 477899999999999876542 1 1
Q ss_pred CCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCC-CceeecCCCcccceeecceEEEe-------
Q 037772 148 EPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLP-GPVVIPGSRFREVYYWDSYWVIR------- 219 (472)
Q Consensus 148 ~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp-~pfIVPGGRFrE~YYWDSYwii~------- 219 (472)
+| ++..++..|++++||.|+|++..- |..+|||||| .|||||||||+|+|||||||+|+
T Consensus 123 ~~---------~~~~~~~~~~~~~wp~L~~~~e~~----~k~~sll~lPg~pyvVPGGRF~ElYyWDsYf~~lGL~esgr 189 (558)
T COG1626 123 DP---------PEQQSLYEHIDQLWPALTREVEDL----PKESSLLPLPGYPYVVPGGRFNELYYWDSYFTMLGLAESGR 189 (558)
T ss_pred Cc---------HHHHHHHHHHHhhcccceeeHhhc----CCccccccCCCCceeCCCcccccchHHHHHHHHHHHhhcCc
Confidence 22 357788899999999999987643 5567999999 59999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 037772 220 -------------------------------------------------------------------------------- 219 (472)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (472)
T Consensus 190 ~d~a~~Mv~nF~~~Ie~yG~IpNgnRtYyLsRSQPPff~~Mv~~~~~~~g~~~~~r~l~~~~key~~w~~~~~~l~~~~~ 269 (558)
T COG1626 190 WDLAKGMVDNFAYEIETYGHIPNGNRTYYLSRSQPPFFALMVELVAEHEGVAALKRYLPALIKEYAYWMDGVPSLQPKQG 269 (558)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCceeeEeecCCCCcHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhccCcccCcccc
Confidence
Q ss_pred ---------------------------------------------------------------------cCCCccccccc
Q 037772 220 ---------------------------------------------------------------------NTSDFTTLAIT 230 (472)
Q Consensus 220 ---------------------------------------------------------------------d~~~L~si~t~ 230 (472)
++..|.||+|+
T Consensus 270 ~~~~~~~~dG~~pe~ln~y~dd~~tpr~Esy~~t~~~a~~~~~r~~~eiy~~dRA~reSGwD~ssRw~g~~~~LasIrt~ 349 (558)
T COG1626 270 YSRVVTLGDGSPPEVLNRYWDDRDTPRQESYHETIATAKHNPERPLDEIYRDDRAGRESGWDFSSRWLGVPAPLASIRTT 349 (558)
T ss_pred ceeEEecCCCCchhhhhhhhcccCCccchhhhhhHHHhhcCcCCChHhhhcchhhhHhccCcccccccCCCccccceecc
Confidence 56679999999
Q ss_pred ccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhh
Q 037772 231 SILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQR 310 (472)
Q Consensus 231 ~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~ 310 (472)
.++|||||++||. ++..++++..+.|+.+.++.|+++|..|+.||+++|||++.|+|.|||.+.++
T Consensus 350 ~~~p~dlna~~y~-------~e~~~~~~~~~~~~~~~~e~~~~~A~~R~~aI~~ylW~~e~G~~~DYd~k~~~------- 415 (558)
T COG1626 350 SILPVDLNALLYK-------LEEIIANISAIKGDKETAERYQRKAEARRCAINKYLWDDEAGQYNDYDWKLKK------- 415 (558)
T ss_pred ccchhhhhhHHHH-------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHccccccceeehhhhhccc-------
Confidence 9999999999999 99999999999999999999999999999999999999999999999998663
Q ss_pred hhccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcC
Q 037772 311 WKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSG 390 (472)
Q Consensus 311 ~~~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG 390 (472)
.+..+++++++|||+|.+++ ++++++++.+.. .+..||||+||...+++|||.||||+|+|||+++||+|||
T Consensus 416 -----~~~y~~a~~~~plw~G~a~~--era~~~a~~~~~-~l~~pGGl~ast~~s~~QWD~PNgWaPlq~ia~~gL~ryG 487 (558)
T COG1626 416 -----RRAYLSAAALWPLWVGLATP--ERAQRLADAALS-MLEQPGGLSASTPRSGQQWDYPNGWAPLQWIATQGLKRYG 487 (558)
T ss_pred -----cccccchhhhhhccCCCCCH--HHHHHHHHHHHH-HhcCCCceecccccccccccCCCCCccHHHHHHHHHHHHh
Confidence 46678999999999999986 578888887764 6779999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCC-CCCCCCCcccCCCCccchHHHHHHHHHHhCCCC
Q 037772 391 SHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKC-GDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPA 461 (472)
Q Consensus 391 ~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~-g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~~ 461 (472)
+. ++|.+||.|||.++.+.|..+|++.|||++.++ +..|+||||+.|+||||||||+|.+|+-||..+
T Consensus 488 ~~---~la~~ia~rwL~~v~~~~d~~~~~VEKydv~~~~~~~g~~geyp~q~GFGWtNgv~l~lL~~~~~~~ 556 (558)
T COG1626 488 YD---ILADDIARRWLTNVEQFYDYEGKLVEKYDVSRGTGPGGGGGEYPLQDGFGWTNGVVLKLLDLYGPHA 556 (558)
T ss_pred HH---HHHHHHHHHHHHHHHHHHhhcccceeEeeecccccCCCCCcccCCcccccchhHHHHHHHHhhCccc
Confidence 99 599999999999999999999999999999955 556788999999999999999999999998754
No 8
>PRK10137 alpha-glucosidase; Provisional
Probab=100.00 E-value=1.4e-36 Score=335.33 Aligned_cols=207 Identities=16% Similarity=0.259 Sum_probs=173.5
Q ss_pred cccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchh
Q 037772 230 TSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQ 309 (472)
Q Consensus 230 ~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~ 309 (472)
..+.|||||||||. +++.||+||+++|+.++|++|+++|++++++|+++||||++|+|+||+++++.....+.
T Consensus 573 ~~~e~VDLNsyLy~-------a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~DydL~~~~~~~~~~ 645 (786)
T PRK10137 573 LLQESVDQASYMYS-------DNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVRIEDKPLANGCA 645 (786)
T ss_pred CcCCCHHHHHHHHH-------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEecCccccccccc
Confidence 34459999999999 99999999999999999999999999999999999999999999999997542100000
Q ss_pred hhhccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCC-CCcccccccc-----ccCCCCcCCCCCcCchHHHHHH
Q 037772 310 RWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSG-LLGAAGIATS-----LTRSGEQWDFPNGWAPLQHMIV 383 (472)
Q Consensus 310 ~~~~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~-~l~~gGIpTS-----l~~sgqqWD~PN~WaPlq~mii 383 (472)
.........++++|+|||+|++++ +++++|+++|.++. +..++||||. .+++..||||| +|||+|||++
T Consensus 646 --g~~i~~~~~~~agf~PLwaGia~~--eqA~~VV~~L~~p~~F~t~~GipTlS~s~p~ydp~~YWRGp-VWpp~N~Li~ 720 (786)
T PRK10137 646 --GKPIVERGKGPEGWSPLFNGAATQ--ANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGR-VWVDQFYFGL 720 (786)
T ss_pred --CcceeeeccCccchhhccCCCCCH--HHHHHHHHHhcChhhcCCCCCccCcCCCccccCCCCCCCCC-cCHhHHHHHH
Confidence 000012356689999999999985 67999999998765 5578899874 24677899998 9999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCC
Q 037772 384 EGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGW 459 (472)
Q Consensus 384 ~GL~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~ 459 (472)
+||++||+.+ +|++|+++|++ +.+.|.++|.|+|||||.++.+.|+ .+||||++|+|.|.+.|..
T Consensus 721 ~GL~rYG~~e---~A~~La~~ll~-~a~~l~~tG~~~E~YDp~TGeg~Ga-------~~FSWTAAvlLml~~~~~~ 785 (786)
T PRK10137 721 KGMERYGYRD---DALKLADTFFR-HAKGLTADGPIQENYNPLTGAQQGA-------PNFSWSAAHLYMLYNDFFR 785 (786)
T ss_pred HHHHHcCCHH---HHHHHHHHHHH-HHHHHHhcCceEEeECCCCCcccCC-------CCCChHHHHHHHHHHHHhc
Confidence 9999999985 99999999999 5788999999999999998755443 4799999999999998743
No 9
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=99.95 E-value=3.2e-28 Score=272.72 Aligned_cols=214 Identities=24% Similarity=0.410 Sum_probs=177.4
Q ss_pred cccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchh
Q 037772 230 TSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQ 309 (472)
Q Consensus 230 ~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~ 309 (472)
.....|||+|+|+. ....|++||..||..+++.+|.+.++.++++|++.+|||++|+|+|+...+..+.-...
T Consensus 553 ~~e~hvDl~sWMa~-------~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~~~~v~l~~~ 625 (801)
T PF03200_consen 553 DSERHVDLTSWMAF-------FALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLHPDAVRLEWK 625 (801)
T ss_pred ccceechHHHHHHH-------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccccccceeccc
Confidence 45578999999999 99999999999999999999999999999999999999999999999987662110000
Q ss_pred -------------h---h-hccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhC-CCCccccccc-c----ccCCC
Q 037772 310 -------------R---W-KASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSS-GLLGAAGIAT-S----LTRSG 366 (472)
Q Consensus 310 -------------~---~-~~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~-~~l~~gGIpT-S----l~~sg 366 (472)
. - ........+...+++||++++.++++++++++++.|.++ .|+.++||++ | .+.++
T Consensus 626 ~~~~~~~~~~~~~r~~~~~~~~~~v~~~Gyvsl~Plll~ll~~ds~~L~~~L~~l~D~~ef~s~yGirSLSk~~~~y~~~ 705 (801)
T PF03200_consen 626 EVLENGQFRRELVRVVRGEPQLQLVCHFGYVSLFPLLLGLLPPDSERLERLLERLLDEDEFWSPYGIRSLSKSDPFYGPG 705 (801)
T ss_pred ccccccccchhheecccCCccccceeeecccCCCchhhccCCCCHHHHHHHHHHhcChhhccCCCCCccccCCCcccccc
Confidence 0 0 001124456778999999999998778899999999865 5889999986 1 23332
Q ss_pred ------CcCCCCCcCchHHHHHHHHHhhcCCh------hHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCC
Q 037772 367 ------EQWDFPNGWAPLQHMIVEGLGKSGSH------EAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGG 434 (472)
Q Consensus 367 ------qqWD~PN~WaPlq~mii~GL~~yG~~------ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgG 434 (472)
.||||| +|.|+|||+++||++|+.. .|++++.+|+++.++++++.|++||.+||+||+.||.+.|.
T Consensus 706 ~~e~d~~YWRGp-IW~~~NyL~i~aL~~y~~~~g~~~~~a~~~y~~Lr~nli~nv~~~~~~tg~~~E~Y~~~tG~g~g~- 783 (801)
T PF03200_consen 706 ENEHDPSYWRGP-IWIPINYLLIEALRRYGYYYGPYQERAKEIYKELRKNLINNVYKEYKRTGYFWEQYNPETGRGQGA- 783 (801)
T ss_pred CCccCCCcccCc-cchhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccEEEeECCCCCcccCC-
Confidence 399999 9999999999999999953 37788999999999999999999999999999999765553
Q ss_pred CcccCCCCccchHHHHHHHHHHh
Q 037772 435 GEYIPQTGFGWSNGVVLAFLEEF 457 (472)
Q Consensus 435 GEY~~Q~GFGWTNgVvL~ll~~y 457 (472)
....|||+.|++.|.++|
T Consensus 784 -----~~FtGWtslv~~im~e~Y 801 (801)
T PF03200_consen 784 -----HPFTGWTSLVVLIMAEQY 801 (801)
T ss_pred -----CCCCchHHHHHHHHhccC
Confidence 456689999999999877
No 10
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.6e-21 Score=209.63 Aligned_cols=237 Identities=16% Similarity=0.273 Sum_probs=181.0
Q ss_pred ccceeecceEEE----ecCCCcccc---------cccccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHH
Q 037772 207 REVYYWDSYWVI----RNTSDFTTL---------AITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLK 273 (472)
Q Consensus 207 rE~YYWDSYwii----~d~~~L~si---------~t~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~ 273 (472)
.|.|+|-+-=-. .|+.+|++- ....-..|||-|++.. +.+.|..+|+.+|..+....+..
T Consensus 562 n~~YrWrGR~~~~~t~lnp~~L~SGlDDyPRAs~Ps~~ElhvDl~~W~~l-------asrsl~~iae~lg~~~~E~~~a~ 634 (849)
T KOG2161|consen 562 NEGYRWRGRDLPTGTTLNPHCLSSGLDDYPRASHPSVLELHVDLRCWVGL-------ASRSLNRIAEFLGETEAEYATAI 634 (849)
T ss_pred cceeEeccCCCCCCceeccccccccccccccccCchHHHHhhhhHHHHHH-------HHHHHHHHHHHhcchhhhhhhhh
Confidence 388999876221 155555542 2233357999999999 99999999999998773333555
Q ss_pred HHHHHHHHHHhhcccCCCCcEEeeeccCCCcccc----h------h----hhh-cc-C-CCcccchhcHHHHhhcCCCCc
Q 037772 274 AAQARKAAIDSVFWNEENGQWLDYWISNGTSSQE----C------Q----RWK-AS-N-QNNNAFASNFVPIWIDLFNSD 336 (472)
Q Consensus 274 ~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~----~------~----~~~-~~-~-~~~~~~~s~~~PLw~g~~~~~ 336 (472)
.-.+-++.|.+.+|||+.++|+|+-.++..+.-. + . .|. ++ . ...++..-+++|+..++.+.+
T Consensus 635 ~e~~~~e~L~~~HW~ee~~~y~D~g~h~~dv~~~~~p~~g~~~r~~~r~v~~~~p~~e~v~~h~GYvSl~P~mlrLlp~~ 714 (849)
T KOG2161|consen 635 TELECKENLVQNHWSEEDQAYCDFGNHTEDVSITPEPSIGKQFRGLVRRVDWFVPNLELVDRHIGYVSLFPFMLRLLPAT 714 (849)
T ss_pred hHHHHHHHHHHhccChhhCeeeeccCChhhccccccCCcccchhhhheeccccCCcceeeecccceeehhhhHHhhcCCC
Confidence 5566688999999999999999987655432100 0 0 010 00 0 012455678999999999988
Q ss_pred hHHHHHHHHHHHhCC-CCccccccc----c-c---cCCCC---cCCCCCcCchHHHHHHHHHhh-cCCh------hHHHH
Q 037772 337 TCIVEKVRKSFQSSG-LLGAAGIAT----S-L---TRSGE---QWDFPNGWAPLQHMIVEGLGK-SGSH------EAKSM 397 (472)
Q Consensus 337 ~~~a~~vv~~L~~~~-~l~~gGIpT----S-l---~~sgq---qWD~PN~WaPlq~mii~GL~~-yG~~------ea~~l 397 (472)
+.+..++++.|.++. ++.|+||.+ + . .+|.. ||||| +|.|++||+..+|++ |.+. .|+++
T Consensus 715 S~rL~~~Ldli~D~~~lwSpYGlrSLS~~s~yym~~Nte~d~pYWRGp-IW~N~NYLiLsaL~~~Y~~~~gp~~~nA~~i 793 (849)
T KOG2161|consen 715 SPRLTKLLDLISDENELWSPYGLRSLSRSSPYYMKRNTEHDPPYWRGP-IWMNVNYLILSALRHFYLYVPGPYQSNAAKI 793 (849)
T ss_pred chHHHHHHHHhcCcccccCcchhhhhhhcCCccccccCCCCCcccccc-eeeehHHHHHHHHHHhcccCCCchHHHHHHH
Confidence 889999999998875 669999975 1 1 23333 89999 999999999999999 7653 47899
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHh
Q 037772 398 AQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 457 (472)
Q Consensus 398 A~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~y 457 (472)
+++|+.+.+.++++.|.+||.+||+||..||.+.|. ....|||+.|+++|-+.|
T Consensus 794 yeELRaNlv~Nv~k~~~~tG~~wE~Yd~~tG~G~ga------~~FtGWTaLVl~imse~y 847 (849)
T KOG2161|consen 794 YEELRANLVGNVSKQWQQTGYFWENYDPRTGRGLGA------RHFTGWTALVLLIMSENY 847 (849)
T ss_pred HHHHHHHHHHHHHHHhhccceeeeecCCCCCCcccc------ccccchHHHHHHHHHhcc
Confidence 999999999999999999999999999999755443 588999999999998876
No 11
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.8e-11 Score=135.23 Aligned_cols=189 Identities=17% Similarity=0.263 Sum_probs=145.5
Q ss_pred ccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhh
Q 037772 231 SILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQR 310 (472)
Q Consensus 231 ~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~ 310 (472)
.=-||++|++-+. .-+....++.++++.+++++|.+.|+++++.+++.||++ ..|+|.-.....
T Consensus 413 ~g~pi~i~al~~~-------~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~------- 476 (641)
T COG3408 413 AGKPVAINALQYY-------ALKAALRLANLLGDEEDAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKD------- 476 (641)
T ss_pred CCCceeHHHHHHH-------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCC-------
Confidence 4569999999777 677777888888888999999999999999999999998 448887765421
Q ss_pred hhccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCcccccccc-----ccCCCCcCCCCCcCchHHHHHHHH
Q 037772 311 WKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATS-----LTRSGEQWDFPNGWAPLQHMIVEG 385 (472)
Q Consensus 311 ~~~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTS-----l~~sgqqWD~PN~WaPlq~mii~G 385 (472)
.+.+.-+.-.+.++++|+.+++ .+ ++..+....+++++||.|- .+++.-||.|| +||.++.+++.|
T Consensus 477 ----~~~r~~~~~a~~l~~~gi~~~~---~~-~~~~l~e~~lltp~GlRTLS~~dp~Y~p~yYH~Gt-VWP~~~gifv~g 547 (641)
T COG3408 477 ----VPIRPNFSNAIHLLYTGIVDPE---RA-VIIRLAEEDLLTPWGLRTLSPDDPRYNPMYYHNGT-VWPHDTGIFVLG 547 (641)
T ss_pred ----cccCccceecccccccccCchH---HH-HHHHHHHHhccCCccccccCCCCCCcCCCcccCCC-cccchHHHHHHH
Confidence 1344445667888999999863 22 4444444578899999972 35666689998 999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHH-HHHHh
Q 037772 386 LGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLA-FLEEF 457 (472)
Q Consensus 386 L~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~-ll~~y 457 (472)
+.++|..+ ..+.+++++.+... .-|.|-|-|+-...+.+. | +--..|+.|.+|. ++...
T Consensus 548 ~~r~G~~~--~~~~~~~~~~~~~a-----~~~~~pE~f~g~~~~~P~--g----c~~QAWS~a~~l~~~~~~~ 607 (641)
T COG3408 548 LRRYGLKD--IQALELFDGLFSSA-----SPGRIPELFDGDSPNRPK--G----CYPQAWSSAEILRSLLQGL 607 (641)
T ss_pred HHHcCccc--HHHHHHHHHHhhhc-----ccCCCcccccccCCCCCC--C----cchhhhhHHHHHHHHHHHH
Confidence 99999875 27888888877653 247788999998765322 2 5678999999998 76644
No 12
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=99.25 E-value=6.2e-11 Score=123.61 Aligned_cols=190 Identities=17% Similarity=0.182 Sum_probs=136.3
Q ss_pred cccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchh
Q 037772 230 TSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQ 309 (472)
Q Consensus 230 ~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~ 309 (472)
....||++|++.|. ..+.++.+++..++. .+.+|+++|+++++++++.||+++.|.|.|+--.++.
T Consensus 161 r~g~~vEIqal~y~-------AL~~~~~la~~~~~~-~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~~------ 226 (370)
T PF06202_consen 161 RDGAAVEIQALWYN-------ALRFAAELAEKFGDE-LAARYREWAERLKESFEKRFWDEDRGYYADALDGDKE------ 226 (370)
T ss_pred CCCcchHHHHHHHH-------HHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCCC------
Confidence 34478999999999 899999999987766 8999999999999999999999999999998755442
Q ss_pred hhhccCCCcccchhc--HHHHhhcCCCCchHHHHHHHHHHHhCCCCcccccccc-----ccCC----------CCcCCCC
Q 037772 310 RWKASNQNNNAFASN--FVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATS-----LTRS----------GEQWDFP 372 (472)
Q Consensus 310 ~~~~~~~~~~~~~s~--~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTS-----l~~s----------gqqWD~P 372 (472)
+.....+-. .+-|+.+++++ ++++++++.+. +.+++|.||.|= .+++ ..|+.|+
T Consensus 227 ------~d~~irpN~~~a~~L~~~~l~~--~~a~~vl~~~~-~~L~tp~GlRTLs~~~~~Y~p~y~g~~~~rd~sYHnGs 297 (370)
T PF06202_consen 227 ------PDDSIRPNQLIALSLPPGLLDP--EQAKKVLDRVE-EELLTPWGLRTLSPSDPRYNPIYEGDQDSRDMSYHNGS 297 (370)
T ss_pred ------CCcccccCchhHHhcCCccCCH--HHHHHHHHHHH-HHcCCCCchhcccCCCCCcCCCCCCccccCcccccCCC
Confidence 111111111 23456677774 57888998875 477799999871 1333 3599998
Q ss_pred CcCchHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh--cCcccccccccCCCCCCCCCcccCCCCccchHHHH
Q 037772 373 NGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKE--TGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVV 450 (472)
Q Consensus 373 N~WaPlq~mii~GL~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~--tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVv 450 (472)
+||-.+-++++||.++|... +.|.+++.+.|+...+...+ -|.+-|-||-....-+ .| -.-.-|+.|-+
T Consensus 298 -vWpw~~g~~~~al~r~g~~~--~~~~~~~~~ll~~~~~~~~~~~~~~lpEl~dg~~~~~p-~g-----c~~QAWS~a~i 368 (370)
T PF06202_consen 298 -VWPWDNGIYAEALLRYGFDE--EEAIREAKSLLEGFEEHLQEFGLGRLPELFDGDPPHYP-RG-----CSPQAWSVAEI 368 (370)
T ss_pred -cCcCcHHHHHHHHHHhCccc--hHHHHHHHHHHHHHHHHHhhccCCCcchhcCCCCCCCC-CC-----CHHHHHHHHHh
Confidence 99999999999999999952 35666667777654444333 4789999983321111 11 13356888776
Q ss_pred H
Q 037772 451 L 451 (472)
Q Consensus 451 L 451 (472)
|
T Consensus 369 l 369 (370)
T PF06202_consen 369 L 369 (370)
T ss_pred h
Confidence 5
No 13
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=98.70 E-value=1.8e-08 Score=108.67 Aligned_cols=164 Identities=16% Similarity=0.234 Sum_probs=105.0
Q ss_pred ceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCC
Q 037772 237 LNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQ 316 (472)
Q Consensus 237 LNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~ 316 (472)
.|+++|. ..+.+|+||+.+|+.++|+.|+++|+++|+||++.|||+++|.+- +
T Consensus 276 ~~~~~~~-------~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~~-----~--------------- 328 (509)
T PF05592_consen 276 TNALYYY-------ALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGYA-----D--------------- 328 (509)
T ss_dssp HHHHHHH-------HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEEC-----T---------------
T ss_pred HHHHHHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCccc-----C---------------
Confidence 6999999 999999999999999999999999999999999999999998221 1
Q ss_pred CcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCC-ccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhHH
Q 037772 317 NNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLL-GAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAK 395 (472)
Q Consensus 317 ~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l-~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea~ 395 (472)
....++.+||++|+++++ ++.+++.+.|.+. +- ....+.++.. ...+++++|.+.|..+
T Consensus 329 --~sq~~~alAl~~gl~p~~-~~~~~~~~~l~~~-~~~~~~~~~~g~~--------------g~~~~~~~L~~~g~~~-- 388 (509)
T PF05592_consen 329 --GSQHANALALLFGLVPEE-ERAAAALKRLAKR-IAANGYHLSTGFI--------------GSPYLLEALFRAGRAD-- 388 (509)
T ss_dssp --TSHCHHHHCHHCCHC-HH-HHTCHCHCHCHHC-CHCCCHS--TCCC---------------CHHHHHHHHHCCHHC--
T ss_pred --CchHHHHHHHHhchhhhh-hhHHHHHHHHHHH-HHhcCCCcCcccc--------------cHHHHHHHHHHcCCHH--
Confidence 135789999999999853 2323444444321 11 1111222222 1267899999999885
Q ss_pred HHHHHHHH-----HHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHh
Q 037772 396 SMAQDIAM-----RWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 457 (472)
Q Consensus 396 ~lA~~Ia~-----rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~y 457 (472)
.|.+++. .|...+.+ ...+++|.++.... ........=+|..+++-+|.+..
T Consensus 389 -~a~~~~~~~~~~~w~~ml~~---g~tT~wE~w~~~~~------~~~~~S~~H~w~~~p~~~l~~~v 445 (509)
T PF05592_consen 389 -GAYDLLTQRDYPSWGYMLDQ---GATTLWEYWDGDGG------DPPNRSLCHAWSAGPTYWLYRYV 445 (509)
T ss_dssp -CHHHHHHHHHHHHCHHHHCT---T-SS--SS-STT-T------CTT-S-SSBGGG-THHHHHHHCT
T ss_pred -HHHHHHHhccccchhHHHhC---CCCEEEEecCccCC------CCCCCCCCCCcchhHHHHHHHHh
Confidence 5555554 34444322 23579999987541 11123677899999888776643
No 14
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=98.48 E-value=3.3e-06 Score=93.84 Aligned_cols=188 Identities=15% Similarity=0.158 Sum_probs=123.2
Q ss_pred eeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCCC
Q 037772 238 NIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQN 317 (472)
Q Consensus 238 Na~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~ 317 (472)
++..|. .....++||+.+|+.+.+++|++.|++++++|++.+||++.|.|.++--... ..
T Consensus 416 ~a~~~a-------AL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~-------------~~ 475 (616)
T TIGR01577 416 ASAVYG-------GLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMV-------------LD 475 (616)
T ss_pred HHHHHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCC-------------CC
Confidence 566677 7888999999999998899999999999999999999999998887643111 11
Q ss_pred cccchhcH-HHHhhcCCCCchHHHHHHHHHHHhCCCCc--cccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhH
Q 037772 318 NNAFASNF-VPIWIDLFNSDTCIVEKVRKSFQSSGLLG--AAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEA 394 (472)
Q Consensus 318 ~~~~~s~~-~PLw~g~~~~~~~~a~~vv~~L~~~~~l~--~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea 394 (472)
...-+|-+ +|+-.|+.++++.++...++.+.+ .+.. +||+. ...+....+.|.|......+.+.+.+.|..+.
T Consensus 476 ~~vDaSlL~l~~~~g~l~~~Dpr~v~Tv~~I~~-~L~~~~~ggi~---RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~ 551 (616)
T TIGR01577 476 KTIDISILGISVPFNLIAPDDERMVKMAEAIEK-HLTSPIVGGIK---RYENDPYVGGNPWILTTLWLSQLYIKQGRILK 551 (616)
T ss_pred CcccHHHHhHHHhcCCCCCCChHHHHHHHHHHH-HhcccCCCeee---CCCCCCCCCCCcHHHHHHHHHHHHHHhccccc
Confidence 12223322 344478887765555555565553 2333 34542 22222333458999999999999998886531
Q ss_pred HH------HHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHH
Q 037772 395 KS------MAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEE 456 (472)
Q Consensus 395 ~~------lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~ 456 (472)
.. -..+=|++.++.+...-..+|-|-|.+|+.++...| ..--+||-+.++..+..
T Consensus 552 ~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gll~Eqvd~~~g~~~g-------~~Pl~wSHa~~i~a~~~ 612 (616)
T TIGR01577 552 ALNHNGADIYLQKSKKLLKWVMDHRTDLGLLPEQVDKETGKPAW-------AVPLGWSHAMFLLTVLD 612 (616)
T ss_pred ccccchhhhHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCC-------cCCcccchHHHHHHHHH
Confidence 00 001234444444444334579999999999865444 34568998877655443
No 15
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=98.30 E-value=1.9e-06 Score=94.74 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=89.4
Q ss_pred ccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhh
Q 037772 233 LPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWK 312 (472)
Q Consensus 233 iPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~ 312 (472)
.||++|+++|. +.+.++.+++.+|+ .+..|+++|+++++++++.||+++.|.++|+.-..+.+. .+.
T Consensus 424 ~~VEInALwYn-------AL~~~a~la~~~g~--~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~v~~d~~~~----~~~ 490 (575)
T TIGR01561 424 AACEINALWYN-------ALKTAEFLGNELGE--DAESLEEKAAGVAKNFAEKFINPDGNCLFDLIHQDEAGN----QVK 490 (575)
T ss_pred ccHHHHHHHHH-------HHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEecCCCCC----ccc
Confidence 79999999999 99999999999997 467899999999999999999999999988764332100 011
Q ss_pred ccCCCcccchhcHHHHhhcCCCCchH-HHHHHHHHHHhCCCCcccccccc-----ccCC----------CCcCCCCCcCc
Q 037772 313 ASNQNNNAFASNFVPIWIDLFNSDTC-IVEKVRKSFQSSGLLGAAGIATS-----LTRS----------GEQWDFPNGWA 376 (472)
Q Consensus 313 ~~~~~~~~~~s~~~PLw~g~~~~~~~-~a~~vv~~L~~~~~l~~gGIpTS-----l~~s----------gqqWD~PN~Wa 376 (472)
+...+++.-.+-.+| .++.++ + ++++|++.+. ..+++|.||.|= -+++ .-|-.|+ +||
T Consensus 491 d~s~RPNql~A~sL~--~~ll~~--~~~~~~vl~~v~-~~Lltp~GlRTLsp~d~~Y~p~Y~g~~~~Rd~aYHqGt-vWp 564 (575)
T TIGR01561 491 DKAIRPNQIFAISLP--FPIIDD--ESIAKAILDLIE-KDLLRPFGLKSLSRDDPLYKGQYKGDALSRDTAYHNGS-LPP 564 (575)
T ss_pred ccccCCCceeHhhCC--CCCCCH--HHHHHHHHHHHH-hhccCCcccccCCCCCCCcCCCCCCCccccCCcCcCCC-cCc
Confidence 112233332222233 356664 4 6778886554 477899999971 1222 2588888 998
Q ss_pred hHH
Q 037772 377 PLQ 379 (472)
Q Consensus 377 Plq 379 (472)
-+-
T Consensus 565 wl~ 567 (575)
T TIGR01561 565 WLH 567 (575)
T ss_pred cch
Confidence 654
No 16
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=97.71 E-value=0.00018 Score=84.95 Aligned_cols=203 Identities=15% Similarity=0.080 Sum_probs=131.8
Q ss_pred cccccccceeeeeeccchhhHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHHhhcccCC-CCcEEeeecc--C
Q 037772 230 TSILPVDLNIFILKVKVCAFLMELDIVSMAQIV-----GDNKTAESFLKAAQARKAAIDSVFWNEE-NGQWLDYWIS--N 301 (472)
Q Consensus 230 ~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~l-----G~~~~A~~y~~~A~~rk~AI~~~lWdee-~G~y~Dyd~~--~ 301 (472)
++=.||.+|+++|. ..+.++++++.. |.......|.++|++.++.+++.||+++ .+.=+|++.. +
T Consensus 1218 RdG~aVEInaLwyn-------AL~~~~~l~~~~~~~~~g~~~~~~~~~~wa~~ik~~Fe~~F~~~~~~~~lyDv~~~~vn 1290 (1464)
T TIGR01531 1218 RDGAAVEIVGLLKS-------ALRFLIELKEKGVFKRSGVETQKWSYIEWNQKIQDNFEKRFFVDESQDADYDVAKLGVN 1290 (1464)
T ss_pred CCCCceeHHHHHHH-------HHHHHHHHHHhcCcCcCCcccchhhHHHHHHHHHHHHhhhcCCCcccCccccccchhhc
Confidence 33468999999999 899999999876 7665567799999999999999999954 3444554421 1
Q ss_pred CCcccchhh--------hhccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccc---------c-
Q 037772 302 GTSSQECQR--------WKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSL---------T- 363 (472)
Q Consensus 302 ~~~~~~~~~--------~~~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl---------~- 363 (472)
+ ..+|+ |.+-+.++++-.+-.+| -.+.+ .+++.++++.. + .++.|.|+.|=- +
T Consensus 1291 r---rgIykD~~~s~~~~~D~qlRPN~~iA~sla--~~l~~--~~~a~~~L~~v-~-~LltP~GlRTLdP~D~~Y~g~Y~ 1361 (1464)
T TIGR01531 1291 R---RGIYKDSYGSTKPWTDYQLRPNFAIAMTVA--PELFV--PEKAWKALTIA-E-VLLGPLGMKTLDPSDWNYRGYYN 1361 (1464)
T ss_pred c---ccccccccCCCCCCCCcccCCCceEEEeCC--cccCC--HHHHHHHHHHH-H-HhccCCccccCCCCCcCCCCccC
Confidence 1 11111 22224455554443333 12333 35677777766 3 477999998710 1
Q ss_pred CC-----C------CcCCCCCcCchHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHhc--CcccccccccC
Q 037772 364 RS-----G------EQWDFPNGWAPLQHMIVEGLGKSGSH---EAKSMAQDIAMRWINTNYVAYKET--GAMHEKYNVEK 427 (472)
Q Consensus 364 ~s-----g------qqWD~PN~WaPlq~mii~GL~~yG~~---ea~~lA~~Ia~rwl~~~~~~~~~t--G~m~EKYd~~~ 427 (472)
++ . -|-.|| +|+-+-=..++++.+.... .....+.+...+.|....+...+. |.+-|-||-..
T Consensus 1362 g~~dsrD~~t~kg~aYHqG~-eW~WllG~fl~A~lk~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~g~l~El~dgdg 1440 (1464)
T TIGR01531 1362 NGEDSDDFATAKGRNYHQGP-EWVWPIGYFLRARLHFHFKTGPRCQAAAIKPVSYLLQQLYYHLKESPWRGLPELTNKDG 1440 (1464)
T ss_pred CchhhccccccccccccCCC-cCccchhHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCC
Confidence 11 1 478888 9998877778888876543 222233455677777766666655 58999988764
Q ss_pred CCCCCCCCcccCCCCccchHHHHHHHHH
Q 037772 428 CGDIGGGGEYIPQTGFGWSNGVVLAFLE 455 (472)
Q Consensus 428 ~g~~GgGGEY~~Q~GFGWTNgVvL~ll~ 455 (472)
..-+. | ..-.-|+.|-+|+++.
T Consensus 1441 p~~~~-g-----c~aQAWSvaelLr~l~ 1462 (1464)
T TIGR01531 1441 EYCND-S-----CPTQAWSVACLLELLY 1462 (1464)
T ss_pred CCCCC-C-----CHHHHHHHHHHHHHHh
Confidence 32221 1 3567899999998753
No 17
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.003 Score=70.40 Aligned_cols=177 Identities=18% Similarity=0.139 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCCCcccchhcHHHHhh
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWI 330 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~~~~~~s~~~PLw~ 330 (472)
.....+.+|+..|+...|+.|++.|++++++|.+.+++++.|.|.-+--. . ....+.+|-+-....
T Consensus 425 gLd~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~-~-------------~~~~vDasll~l~~f 490 (612)
T COG3387 425 GLDAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGR-K-------------PDDTVDASLLGLVLF 490 (612)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccCCeeehhcCC-C-------------ccccccHHHhhcccc
Confidence 67778899999999999999999999999999999999998877644422 0 122344554544557
Q ss_pred cCCCCchHHHHHHHHHHHhCCCCccc-cccccccCCCCcCCCC---C-cCchHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 037772 331 DLFNSDTCIVEKVRKSFQSSGLLGAA-GIATSLTRSGEQWDFP---N-GWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRW 405 (472)
Q Consensus 331 g~~~~~~~~a~~vv~~L~~~~~l~~g-GIpTSl~~sgqqWD~P---N-~WaPlq~mii~GL~~yG~~ea~~lA~~Ia~rw 405 (472)
|..+++..++-+.++.+.+ .+..++ |+. -++. +++|+. | .|+-...-+++.+.+.|..+ .|++|-+
T Consensus 491 g~i~~~D~~~~~t~~~I~~-~L~~~~~gi~--RY~~-~~~d~~~~~~~~w~i~t~Wl~~~~~~~g~~~---~a~~ll~-- 561 (612)
T COG3387 491 GFIPPDDPRILATVEAIER-ELLVDGGGIR--RYNN-EYDDGLGGDNGPWIITTLWLSEYYLALGRLD---EAKKLLE-- 561 (612)
T ss_pred CccCCCCHHHHHHHHHHHH-HHhhcCCcEE--cCcc-ccccccCCCCCcceeehhHHHHHHHHccchH---HHHHHHH--
Confidence 7777655566666666654 233333 343 1222 445543 4 89999999999999999985 6766633
Q ss_pred HHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCC
Q 037772 406 INTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGW 459 (472)
Q Consensus 406 l~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~ 459 (472)
.+...-..+|-+-|.+|..+|...| ..--.|+.+-++..+..+-+
T Consensus 562 --~l~~~a~~~gll~EQv~~~~G~~~g-------~~PlawSha~~I~ai~~l~~ 606 (612)
T COG3387 562 --WLLAFASPLGLLPEQVDDGSGEPLG-------AFPLAWSHAEFIIAIRELEE 606 (612)
T ss_pred --HHHHhcCCCCCcchhhcCCCCccCC-------CCcchhhhHHHHHHHHHHHh
Confidence 3334446789999999998854332 34568998888877776644
No 18
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=97.16 E-value=0.00061 Score=71.37 Aligned_cols=141 Identities=19% Similarity=0.279 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEe--eeccCC--CcccchhhhhccCCCcccchhcHH
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLD--YWISNG--TSSQECQRWKASNQNNNAFASNFV 326 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~D--yd~~~~--~~~~~~~~~~~~~~~~~~~~s~~~ 326 (472)
..+.+++||+++|+++.+++|++.+++.++++++.|||.+ ||. +|.... +.+.. .+.-....+...
T Consensus 175 AL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWnGe---yy~~~~d~~~~~~~~~~a-------DQl~Gqw~a~~~ 244 (365)
T PF04685_consen 175 ALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWNGE---YYRQWYDSKYQNGDGCMA-------DQLCGQWWARLL 244 (365)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEETT---EE--EE---TTS-EES-T-------T-SS--EEHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhCHh---heeeeeccCCCCCCeEEe-------ChhhHHHHHHHc
Confidence 7788999999999999999999999999999999999977 887 552221 11110 011111123333
Q ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCC----cccccccccc------CCCCcCCCCCcCchHHHHHHHHHhhcCChh-HH
Q 037772 327 PIWIDLFNSDTCIVEKVRKSFQSSGLL----GAAGIATSLT------RSGEQWDFPNGWAPLQHMIVEGLGKSGSHE-AK 395 (472)
Q Consensus 327 PLw~g~~~~~~~~a~~vv~~L~~~~~l----~~gGIpTSl~------~sgqqWD~PN~WaPlq~mii~GL~~yG~~e-a~ 395 (472)
-| -++.++ +++++.++.+-+-.+. .+.|.+.... .+.-|-+ .+|+-++|-+.-.|...|..+ |.
T Consensus 245 gl-~~v~~~--e~v~sAL~sI~~~N~~~~~~~~~G~~n~~~p~g~~~~~~~q~~--evW~G~~y~~Aa~mi~~G~~~e~~ 319 (365)
T PF04685_consen 245 GL-GDVLDE--EKVKSALRSIYEYNVKYFLGGEMGAVNGVWPDGKPDTSSPQSN--EVWTGVEYAVAAHMIQEGMVEEGL 319 (365)
T ss_dssp HH-TT-S-H--HHHHHHHHHHHHHHEE-S-BTTTBGGGGS-T--------------------------------------
T ss_pred CC-cCCCCH--HHHHHHHHHHHHhcCeEccCCCCcEEEeeeccccccccccccc--cccccccccccccccccccccccc
Confidence 33 334553 5677767666443322 2345444322 1222433 389888877666666666543 33
Q ss_pred HHHHHHHHHHH
Q 037772 396 SMAQDIAMRWI 406 (472)
Q Consensus 396 ~lA~~Ia~rwl 406 (472)
++|+.+..++-
T Consensus 320 ~~~~~~~~~~~ 330 (365)
T PF04685_consen 320 EIAKGIYDRYY 330 (365)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 35555555443
No 19
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=97.14 E-value=0.0049 Score=64.96 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=80.2
Q ss_pred ccchhcHHHHhhcCCCCchHHHHHHHHHHHhC--CCCccccc----c----------cc---ccCCCCcCCCCCcCchHH
Q 037772 319 NAFASNFVPIWIDLFNSDTCIVEKVRKSFQSS--GLLGAAGI----A----------TS---LTRSGEQWDFPNGWAPLQ 379 (472)
Q Consensus 319 ~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~--~~l~~gGI----p----------TS---l~~sgqqWD~PN~WaPlq 379 (472)
-+...|++....|++++ +|++++++.+... ++..+-.+ | |. ..-+.+|+.|+ .||-+.
T Consensus 291 ff~lGNlLAiLsgLat~--~qa~~I~~lIe~~~~~L~g~mPlki~yPale~~eWri~tg~dpKN~PwsYHNGG-~WP~Ll 367 (436)
T PF12899_consen 291 FFSLGNLLAILSGLATP--EQAEAIMDLIEERWEDLVGPMPLKICYPALEGEEWRIYTGCDPKNTPWSYHNGG-SWPVLL 367 (436)
T ss_pred ehhhhhHHHHHhcCCCH--HHHHHHHHHHHHHHhhhccccchhhccCCCCCCCCccccCcCcCccccccccCC-CcHHHH
Confidence 35678999999999996 5778888877543 22211110 1 11 01256799998 999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHH
Q 037772 380 HMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAF 453 (472)
Q Consensus 380 ~mii~GL~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~l 453 (472)
|+.+-++.+.|..+ +|++... ...+-..+ ..+-|+||-.++...|-.+ +..-+||++.+|-.
T Consensus 368 W~~~aA~ik~gr~~---lA~~al~----~a~~rL~~-dewpEyydGktGrp~Gkqa----r~~QTWSaAgyLlA 429 (436)
T PF12899_consen 368 WFLTAALIKMGRPE---LAERALE----AAENRLSK-DEWPEYYDGKTGRPMGKQA----RKYQTWSAAGYLLA 429 (436)
T ss_pred HHHHHHHHHcCCHH---HHHHHHH----HHHHhhcc-cCCcccccCCCCCcccccc----cccCchHHHHHHHH
Confidence 99999999999996 4443322 22222222 3489999999875555322 46899999988743
No 20
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.81 E-value=0.36 Score=54.45 Aligned_cols=199 Identities=12% Similarity=0.037 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCC-----CCcEEeeeccCCCcccchhhhhcc----CCCcccc
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEE-----NGQWLDYWISNGTSSQECQRWKAS----NQNNNAF 321 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee-----~G~y~Dyd~~~~~~~~~~~~~~~~----~~~~~~~ 321 (472)
.....++||+.+|+.+.+++|++.|+++++.|.+.+|+++ .|.|.-......-........... ......-
T Consensus 411 aL~~Aa~iA~~~g~~~~a~~w~~~Ad~i~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vD 490 (648)
T TIGR01535 411 GLTAAADIAEQNGDAGSAQKYRETADNWQKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLD 490 (648)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccC
Confidence 5667889999999998899999999999999999999999 888877632111000000000000 0123344
Q ss_pred hhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCc--c--cccccc----c--cCCCCcCCC---CCcCchHHHHHHHHHhh
Q 037772 322 ASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLG--A--AGIATS----L--TRSGEQWDF---PNGWAPLQHMIVEGLGK 388 (472)
Q Consensus 322 ~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~--~--gGIpTS----l--~~sgqqWD~---PN~WaPlq~mii~GL~~ 388 (472)
+|-+.-..+|+.+++..++...++.+++. +.. + +|+-=- . ...|.-|++ +|.||-+.--.-+-...
T Consensus 491 aSlL~L~~~G~~~~dDPri~~Tl~aIe~~-L~~~~~~~g~~~RY~~Dgyg~~~~~~~~~~~~~G~~Wpi~T~~~~~y~l~ 569 (648)
T TIGR01535 491 PGFLELVRLGVKSPDDPHILATLKEIDST-IKVDTPKGPSWYRYTHDGYGEPAKTEAYDGTGKGRLWPLLTGERGHYELA 569 (648)
T ss_pred HHHHHHHHcCCcCCCCHHHHHHHHHHHHH-hccCCCCCCeEEecCCCCCCCcCCCCCccCCcCCceeehhhhHHHHHHHH
Confidence 55553445888887656665555555432 111 1 122100 0 011211221 58898765433332223
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCC--CCccc-CCCCccchHHHHHHHHHHhCC
Q 037772 389 SGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGG--GGEYI-PQTGFGWSNGVVLAFLEEFGW 459 (472)
Q Consensus 389 yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~Gg--GGEY~-~Q~GFGWTNgVvL~ll~~yg~ 459 (472)
.|.. +..+|+.+...=..+|-|-|..+..+.....+ =|+-. ...=-.|+-+-++.++..+.+
T Consensus 570 ~~~~---------a~~~l~~~~~~a~~~g~lpEQV~d~~~~~~~~~~~G~pt~Sa~PL~WsHA~yi~l~~s~~~ 634 (648)
T TIGR01535 570 AGKD---------ATPYLKAMEKFANEGGMIPEQVWDQTDLPSRGLFYGLPTDSASPLNWAHAEYVKLLRSNID 634 (648)
T ss_pred cCCh---------HHHHHHHHHHhcCcCCCcCcccCCCCCCcccccccCCcCCccccchhhHHHHHHHHHHhhc
Confidence 3332 23666665555556788999998876211110 01111 234578999999999987743
No 21
>PLN02973 beta-fructofuranosidase
Probab=95.22 E-value=0.38 Score=52.41 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=72.4
Q ss_pred cccchhcHHHHhhcCCCCchHHHHHHHHHHHhC--CCC--------ccc--c----ccccc--cC-CCCcCCCCCcCchH
Q 037772 318 NNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSS--GLL--------GAA--G----IATSL--TR-SGEQWDFPNGWAPL 378 (472)
Q Consensus 318 ~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~--~~l--------~~g--G----IpTSl--~~-sgqqWD~PN~WaPl 378 (472)
..+...|++....+++++ +|.+++++.++.. .+. +|. + +-|.- .| +-+|-.|. .||-+
T Consensus 399 RffslGNllAILs~Lat~--~Qs~aIm~lIe~~w~~Lvg~MPlkicyPaie~~EWri~tG~dpKN~PWSYHNGG-sWP~L 475 (571)
T PLN02973 399 RWFALGNCIAILSSLATP--EQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSYHNGG-SWPVL 475 (571)
T ss_pred chhhhhhHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhcCCcceeccCcCCccceehhccCCCCCccceecCC-CccHH
Confidence 346689999999999996 4677777766541 111 110 0 11110 11 23455555 89999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHH
Q 037772 379 QHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVL 451 (472)
Q Consensus 379 q~mii~GL~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL 451 (472)
.|+.+-++.+.|.++..+-|-+++++ -..+. .-.|+||=.++.-.|- .....-+||.+-+|
T Consensus 476 lw~~~aA~iK~gr~~lA~ral~~ae~-------rl~~d-~WpEyyDGktGr~iGk----qar~yQTWSiAG~L 536 (571)
T PLN02973 476 LWLLTAACIKTGRPQIARRAIEVAEA-------RLHKD-HWPEYYDGKVGRYVGK----QSRKNQTWSVAGYL 536 (571)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-------Hhhhc-CChhhcCCCCCcCcce----eccccCchHHHHHH
Confidence 99999999999999622223333332 22223 3489999887644441 11248899998655
No 22
>PLN02703 beta-fructofuranosidase
Probab=93.23 E-value=1.3 Score=48.71 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=73.4
Q ss_pred cccchhcHHHHhhcCCCCchHHHHHHHHHHHhC--CCC--ccccc------------cccc--cC-CCCcCCCCCcCchH
Q 037772 318 NNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSS--GLL--GAAGI------------ATSL--TR-SGEQWDFPNGWAPL 378 (472)
Q Consensus 318 ~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~--~~l--~~gGI------------pTSl--~~-sgqqWD~PN~WaPl 378 (472)
..+...|++....+++++ +|++++++.++.. .+. .|-.| -|.- .| +-+|-.|. .||-+
T Consensus 431 RffsLGNlLAILs~Lat~--~Qs~aIm~lIe~~w~~Lvg~MPlkIcyPaie~~EWRi~TG~DpKN~PWSYHNGG-sWP~L 507 (618)
T PLN02703 431 RFFTLGNLWSIVSSLATN--DQSHAILDLIEAKWAELVADMPLKICYPAMEGEEWRIITGSDPKNTPWSYHNGG-AWPTL 507 (618)
T ss_pred chhhhhhHHHHHhcCCCH--HHHHHHHHHHHHHHHHHhccCccccccCCcCCccceeeeCcCCCCCCccccCCC-cchHH
Confidence 346689999999999996 5677777776541 111 12221 1110 11 23455655 89999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHH
Q 037772 379 QHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVL 451 (472)
Q Consensus 379 q~mii~GL~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL 451 (472)
.|+.+-++.+.|.++..+-|-+++++ -..+. .-.|+||=.++.-.|- .....-+||.+-+|
T Consensus 508 lWf~~aA~iK~Gr~~lA~ral~~ae~-------rl~~d-~WpEYyDGktGr~iGk----qar~yQTWSiAGyL 568 (618)
T PLN02703 508 LWQLTVASIKMGRPEIAEKAVELAER-------RISLD-KWPEYYDTKRARFIGK----QARLYQTWSIAGYL 568 (618)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-------Hhhhc-cChhhccCCCCcCcce----eccccCchHHHHHH
Confidence 99999999999999622223333332 22223 3489999887644441 11248899998655
No 23
>PLN03005 beta-fructofuranosidase
Probab=93.09 E-value=1.4 Score=47.95 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=73.3
Q ss_pred cccchhcHHHHhhcCCCCchHHHHHHHHHHHhC--CCC--ccccc--c----------ccc--cC-CCCcCCCCCcCchH
Q 037772 318 NNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSS--GLL--GAAGI--A----------TSL--TR-SGEQWDFPNGWAPL 378 (472)
Q Consensus 318 ~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~--~~l--~~gGI--p----------TSl--~~-sgqqWD~PN~WaPl 378 (472)
..+...|++....+++++ +|.+++++.++.. .+. .|-.| | |.- .| +-+|-.|. .||-+
T Consensus 378 RffslGNllAILs~Lat~--~Qs~aIm~lIe~~w~~Lv~~MPlkIcyPa~e~~eWri~tG~dpKN~PWSYHNGG-sWP~L 454 (550)
T PLN03005 378 RWFALGNCVSILSSLATP--DQSMAIMDLLEHRWEELVGEMPLKICYPCLEGHEWRIVTGCDPKNTRWSYHNGG-SWPVL 454 (550)
T ss_pred eehhhhhHHHHHhccCCH--HHHHHHHHHHHHHHHHHhccCCcceeecccCCccceecccCCCCCCCccccCCC-cchHH
Confidence 346689999999999996 5677777777520 111 11111 1 110 11 23455555 89999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHH
Q 037772 379 QHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVL 451 (472)
Q Consensus 379 q~mii~GL~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL 451 (472)
.|+.+-++.+.|.++..+-|-+++++ -..+. .-.|+||=.++.-.|- .....-+||.+-+|
T Consensus 455 lw~~~aA~iK~gr~~lA~ral~~ae~-------rl~~d-~WpEyydGktGr~iGk----qar~~QTWSiAG~L 515 (550)
T PLN03005 455 LWQLTAACIKTGRPQIARRAVDLIES-------RLHRD-CWPEYYDGKLGRYVGK----QARKYQTWSIAGYL 515 (550)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-------Hhhhc-CchhhcCCCCCcccce----eccccCchHHHHHH
Confidence 99999999999999622223333332 22223 3489999887643441 11278899998655
No 24
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=92.98 E-value=0.75 Score=51.68 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCC
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNG 302 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~ 302 (472)
....++.||+++|+++.+..|....++-+++..+.||| |.||.||....
T Consensus 633 ALqa~~amA~~~g~~~~~~~f~~klekak~~ye~kLWN---GsYfnyD~s~s 681 (879)
T KOG2119|consen 633 ALQAASAMARQIGDPNTQDYFNNKLEKAKDVYEKKLWN---GSYFNYDESSS 681 (879)
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHhhcC---CceeccccCCC
Confidence 56778899999999999999999999999999999997 88999997554
No 25
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=92.47 E-value=0.46 Score=50.74 Aligned_cols=179 Identities=17% Similarity=0.258 Sum_probs=94.0
Q ss_pred eeeeeeccchhhHHHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHHhhccc--CCCCcEEeeeccCCCcccchhhhh
Q 037772 238 NIFILKVKVCAFLMELDIVSMAQIVGDNK---TAESFLKAAQARKAAIDSVFWN--EENGQWLDYWISNGTSSQECQRWK 312 (472)
Q Consensus 238 Na~L~~~~~~~~~~e~~LA~la~~lG~~~---~A~~y~~~A~~rk~AI~~~lWd--ee~G~y~Dyd~~~~~~~~~~~~~~ 312 (472)
|.++.. ....+++|.+.++..+ .|++.+++|++++++|.++.=- ++-|.-|-|-..-- +.+..+ +
T Consensus 232 Nm~a~v-------~L~~laei~~~~~~~~~~~la~~~~~la~eI~~gI~~~giv~h~~~g~iyAYEVDG~-G~~~~m--D 301 (424)
T PF06824_consen 232 NMFAVV-------ALEYLAEILRALGWDDSAELAERARALADEIRAGIEKHGIVEHPKFGKIYAYEVDGF-GNHLLM--D 301 (424)
T ss_dssp HHHHHH-------HHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE-SEE-SS-S-EE-----
T ss_pred HHHHHH-------HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHheEEeCCCCCeEEEEEecCC-CCcccc--C
Confidence 666666 6777888888776554 7889999999999999887643 34556666665321 111111 0
Q ss_pred ccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCC---CCccc----cccccccCCCCcCCCCCcCchHHHHHHHH
Q 037772 313 ASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSG---LLGAA----GIATSLTRSGEQWDFPNGWAPLQHMIVEG 385 (472)
Q Consensus 313 ~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~---~l~~g----GIpTSl~~sgqqWD~PN~WaPlq~mii~G 385 (472)
+ -+..+ .-.+| +.|.++.+.+.-++..+.+.++. ..+.| ||-++-... +++|| .-++++|
T Consensus 302 -D--ANvPS-LLSlP-ylGf~~~~DpvYqnTR~~iLS~~~NPyy~~G~~~~GiGsPHt~~------~~iWP--msl~~~~ 368 (424)
T PF06824_consen 302 -D--ANVPS-LLSLP-YLGFCSKDDPVYQNTRRFILSPEGNPYYFSGKAASGIGSPHTPP------GYIWP--MSLAMQG 368 (424)
T ss_dssp ----SSSS--STTHH-HHTSS-TT-HHHHHHHHHHTSTT-STTEEEESSEEEE--TTT-T------TEEEH--HHHHHHH
T ss_pred -C--CCCch-Hhhhh-hcCCCCCCcHHHHHHHHHHhCCCCCCccccCCCcCCCCCCCCCC------CCccH--HHHHHHH
Confidence 0 11122 22456 55666655455566666664433 11233 333221211 35775 3567788
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHH
Q 037772 386 LGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFL 454 (472)
Q Consensus 386 L~~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll 454 (472)
|-.....| .. +. |+....+=..+|.|+|-+|+.++.. | ...-|.|.|++.-+|+
T Consensus 369 lTs~d~~E---i~-~~----L~~L~~t~~gtGlmHES~d~~~~~~------~-TR~WFaWaNslF~eli 422 (424)
T PF06824_consen 369 LTSDDDEE---IR-EC----LRMLKRTTAGTGLMHESFDVDDPSK------F-TRPWFAWANSLFGELI 422 (424)
T ss_dssp HT-S-HHH---HH-HH----HHHHHHTSTTSSS--SEEETTEEEE------E-E-S-BHHHHHHHHHHH
T ss_pred hcCCCHHH---HH-HH----HHHHHhccCCCCceeccccCCCCcc------c-CcHHHHHHHHHHHHHh
Confidence 86544332 22 22 2222222235799999999997532 2 2367999999987765
No 26
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=90.19 E-value=1.6 Score=50.75 Aligned_cols=135 Identities=19% Similarity=0.287 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccC-CCcccchhhhhccCCCcccchhcHHHH
Q 037772 250 LMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISN-GTSSQECQRWKASNQNNNAFASNFVPI 328 (472)
Q Consensus 250 ~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~PL 328 (472)
+..++...+++..|+.+.+..|.+.++..++++.+.-|| |-||-+.... +.. -.. .++...+..+.+.-+.+
T Consensus 765 ~tlq~F~~lak~r~d~~r~~~~~~~~ea~~~~~~~~~wD---g~wy~r~~~d~g~~--lgs--~e~~E~qI~~i~qs~sV 837 (1056)
T COG3459 765 LTLQTFKELAKARGDEARADTWAKHVEALREALETNGWD---GEWYRRGYGDDGTP--LGS--PEDEECQIDSIPQSWSV 837 (1056)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCC---cceEEeccccCCCc--ccC--CCCcccceeeeccchhh
Confidence 378888899999999999999999999999999999999 5566554422 210 000 11223445667888888
Q ss_pred hhcCCCCchHHHHHHHHHHHhCCCCccccc-------------cc-------cccCCCCcCCCCCcCchHHHHHHHHHhh
Q 037772 329 WIDLFNSDTCIVEKVRKSFQSSGLLGAAGI-------------AT-------SLTRSGEQWDFPNGWAPLQHMIVEGLGK 388 (472)
Q Consensus 329 w~g~~~~~~~~a~~vv~~L~~~~~l~~gGI-------------pT-------Sl~~sgqqWD~PN~WaPlq~mii~GL~~ 388 (472)
+.|..++ +++++.++.+.+ .++.|.|| |+ +..+.|.|--.++.| +|.+|.+
T Consensus 838 lSg~gd~--~ra~kaMd~v~k-~L~~pdgvrL~tppf~~~~~~~gyiK~y~pgvREnGgQYtHa~~w------~i~Alak 908 (1056)
T COG3459 838 LSGEGDK--ERAEKAMDSVMK-YLVDPDGVRLFTPPFSYTKGDPGYIKRYPPGVRENGGQYTHAATW------VILALAK 908 (1056)
T ss_pred hhCCCCh--HHHHHHHHHHHH-hccCccccEecCCcccccCCCCCeeecCCcccccccceeecccHH------HHHHHHh
Confidence 8898886 456655555443 22334442 21 123456777778888 7889999
Q ss_pred cCChhHHHHHHHHHH
Q 037772 389 SGSHEAKSMAQDIAM 403 (472)
Q Consensus 389 yG~~ea~~lA~~Ia~ 403 (472)
-|..+ .|-++-.
T Consensus 909 ~G~a~---eAw~~f~ 920 (1056)
T COG3459 909 MGRAD---EAWELFD 920 (1056)
T ss_pred hccHH---HHHHHHH
Confidence 99863 4544443
No 27
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=5.8 Score=41.60 Aligned_cols=176 Identities=17% Similarity=0.265 Sum_probs=102.5
Q ss_pred HHHHHHHHHH-HhCCchhHHHHHHHHHHHHHHHHhhc--ccCCCCcEEeeeccCCCcccchhhhhccCCCcccchhcHHH
Q 037772 251 MELDIVSMAQ-IVGDNKTAESFLKAAQARKAAIDSVF--WNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVP 327 (472)
Q Consensus 251 ~e~~LA~la~-~lG~~~~A~~y~~~A~~rk~AI~~~l--Wdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~~~~~~s~~~P 327 (472)
...-+.+|.+ ..++.+-|++.+.+++++++.|.++= =+.+-|-.|-|....-. .. .+- ...--+|-+..
T Consensus 238 vl~y~~ei~~~~~~~~~~a~~a~~L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~G-n~---l~M----DDaNvPSLLa~ 309 (434)
T COG3538 238 VLSYLQEILEALPHDAEIARQAKELANEIQQGIEQFGKMDHPKGGEIYAYEVDGLG-NQ---LFM----DDANVPSLLAA 309 (434)
T ss_pred hHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHhceecCCCCCeeEEEEecCCC-ce---eec----cCCCchhhhhh
Confidence 4555666666 66778888999999999999997653 24555666777653221 00 000 00112444444
Q ss_pred HhhcCCCCchHHHHHHHHHHHhCC--CCccc----cccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhHHHHHHHH
Q 037772 328 IWIDLFNSDTCIVEKVRKSFQSSG--LLGAA----GIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDI 401 (472)
Q Consensus 328 Lw~g~~~~~~~~a~~vv~~L~~~~--~l~~g----GIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea~~lA~~I 401 (472)
=+.|.+..+...-.+..+.+.++. ..+.| ||-++-..- -++||- -++++||......| -++|
T Consensus 310 PYLG~c~~dDpvY~~TRk~iLS~eNPYy~eG~~a~GiGSpHTp~------~yvWpi--aLaiqgLTa~D~~e----k~~i 377 (434)
T COG3538 310 PYLGFCEKDDPVYQNTRKTILSSENPYYYEGKYASGIGSPHTPD------HYVWPI--ALAIQGLTANDDSE----KKEI 377 (434)
T ss_pred hhhccccCCCHHHHHHHHHHHhcCCCceecceeeccCCCCCCCC------cccchH--HHHHhhcccCChHH----HHHH
Confidence 567777766555555555554332 22333 444332211 158863 57899998776664 2233
Q ss_pred HHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHh
Q 037772 402 AMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 457 (472)
Q Consensus 402 a~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~y 457 (472)
-.- ....=..||.|+|-|||.++.. | ..+=|.|.|...-+|+-.|
T Consensus 378 L~~----L~~tdaGTg~MHE~f~vd~P~~------f-TR~WFsWAN~mF~Elild~ 422 (434)
T COG3538 378 LDM----LKATDAGTGLMHEGFDVDDPEQ------F-TREWFSWANMMFCELILDL 422 (434)
T ss_pred HHH----HHhccCCccceecccCCCCHHH------h-hhHHHHHHHHHHHHHHHHH
Confidence 222 2222235799999999987632 2 2467999999776665544
No 28
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=85.33 E-value=11 Score=40.31 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH------HhhcccCCCCcEEeeecc--CCCcccchhhhhccCCCcccch
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAI------DSVFWNEENGQWLDYWIS--NGTSSQECQRWKASNQNNNAFA 322 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI------~~~lWdee~G~y~Dyd~~--~~~~~~~~~~~~~~~~~~~~~~ 322 (472)
.....+++++.+|+...++.|++.|+++++.| .+-+|++ .+.|.-.... .+.... .......-+
T Consensus 193 AL~~a~~~a~~~g~~~~~~~~~~~a~~i~~~l~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~lD~ 264 (448)
T PF00723_consen 193 ALLRAANLAELFGDPGDAERWRETADEIRERLEGWYGLERGFWPE-FGYFIRIYGSFSGNSEQV-------QGYRSGLDA 264 (448)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHEESGGGBTT-SSBESEESSSEETTTCCE-------EEGSGS-BT
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhccccccccCC-CCeEEEecCCccccchhh-------hcchhhHHH
Confidence 56677889999999999999999999999999 3455654 5556544322 000000 001223334
Q ss_pred hc-HHHHhhcCCCCch----------HHHHHHHHHHHhCCCCcccccccc-----c-cCCCCcCC-----CCCcCchHHH
Q 037772 323 SN-FVPIWIDLFNSDT----------CIVEKVRKSFQSSGLLGAAGIATS-----L-TRSGEQWD-----FPNGWAPLQH 380 (472)
Q Consensus 323 s~-~~PLw~g~~~~~~----------~~a~~vv~~L~~~~~l~~gGIpTS-----l-~~sgqqWD-----~PN~WaPlq~ 380 (472)
+- +.|++ +..+++. ..+-..+..+.+ .+...+.|... + ..++..=+ ..|.|---+.
T Consensus 265 slll~~~~-~~~~~~d~~~~~~~p~sp~~~~T~~~i~~-~l~~~~~in~g~~~~~~~RY~~D~y~~~~~~~G~pw~l~T~ 342 (448)
T PF00723_consen 265 SLLLLPLF-GFVPPDDVDDERFQPHSPRVLNTLKAIEE-ELRVDYPINPGDIDPGIGRYPEDVYDDGLGSEGNPWFLCTF 342 (448)
T ss_dssp HHHHHHHT-TSSTTT-S-TTTTTTTSHHHHHHHHHHHH-CTTTTEGGGTT-STTSEBSCTT--GGSSSBTGS-CBHHHHH
T ss_pred HHHHHHHc-cCCCcccccccccccccHHHHHHHHHHHH-HHHHhcCCCccccCccceecccccccCccCCCCccceeeec
Confidence 44 55654 4444433 344444555543 23333333211 1 11222222 2367754443
Q ss_pred HHHHHH-----hhcCC-------hhH----HHH-----------------------HHHHHHHHHHHHHHHHHhcCcccc
Q 037772 381 MIVEGL-----GKSGS-------HEA----KSM-----------------------AQDIAMRWINTNYVAYKETGAMHE 421 (472)
Q Consensus 381 mii~GL-----~~yG~-------~ea----~~l-----------------------A~~Ia~rwl~~~~~~~~~tG~m~E 421 (472)
-+++-| .+.+. ..+ +++ -.+++..+++.+.. -...|.|-|
T Consensus 343 w~ae~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~~d~~l~~~~~-~~~~g~lsE 421 (448)
T PF00723_consen 343 WAAEALYAEAYRRAGRGRDWPIVREARGFFEKFVSSKQITVGIPYNSEDFISLPKALFEYADSFLRVVRE-ANRNGLLSE 421 (448)
T ss_dssp HHHHHHHHHHHHHHHHTEBEEECTTTHHHHHHHTTTGSSESEEEETSHHHHHHHHHHHHHHHHHHHHHHH-S-TTS---S
T ss_pred hhHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccccccccccCchhhhhcccchHHHHHHHHHHHhc-CCcCcEeee
Confidence 322222 22211 000 111 23467788887766 677899999
Q ss_pred cccccCCCCCCCCCcccCCCCccchHHHHHHH
Q 037772 422 KYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAF 453 (472)
Q Consensus 422 KYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~l 453 (472)
.+|..++-..| ..--.|+-+.+|.+
T Consensus 422 q~~~~~G~~~g-------a~pltwS~~~~l~~ 446 (448)
T PF00723_consen 422 QFNRYTGFMQG-------ARPLTWSYASFLRA 446 (448)
T ss_dssp EE-TTT--EES-------SSS-HHHHHHHHHH
T ss_pred eeecccCCcCC-------CCchhhhhhhhHhh
Confidence 99998865444 35567887777654
No 29
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=76.45 E-value=76 Score=35.66 Aligned_cols=135 Identities=14% Similarity=0.239 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCCCcccc-
Q 037772 254 DIVSMAQIVGDN-----------KTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAF- 321 (472)
Q Consensus 254 ~LA~la~~lG~~-----------~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~~~~~- 321 (472)
.+-.|++.+++. .....|...-+..+++.+++||| |-||-.+-..+ +..+-
T Consensus 521 A~l~is~~l~~~~~~~a~~e~~~~~~~~y~~~L~~~~e~~~~~LwN---GkYy~lws~~~--------------~~s~lA 583 (721)
T COG4354 521 AALEISKYLLDNAQLEALNEASKNYVDFYNTWLKEAREAFNKYLWN---GKYYILWSNSG--------------NDSVLA 583 (721)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccC---ceeEecccccC--------------chhhhH
Confidence 344567777765 23345667777889999999998 66887663222 11122
Q ss_pred ---hhcHHHHhhcCCCC-chHHHHHHHHHHHhCCCC-ccccccccccCC-------CCcCCCCCcCchHHHHHHHHHhhc
Q 037772 322 ---ASNFVPIWIDLFNS-DTCIVEKVRKSFQSSGLL-GAAGIATSLTRS-------GEQWDFPNGWAPLQHMIVEGLGKS 389 (472)
Q Consensus 322 ---~s~~~PLw~g~~~~-~~~~a~~vv~~L~~~~~l-~~gGIpTSl~~s-------gqqWD~PN~WaPlq~mii~GL~~y 389 (472)
...|+.=+.|+.+- +.++++++++.+-+-.+- .+++.+-+.... .-|=. .+|+-+++-+..=|-.-
T Consensus 584 sQL~Gqfy~~LLgLpdivdhd~~ksal~sIy~lnf~~~~~~~~n~v~~dgsp~n~~svq~~--s~W~gi~F~laa~m~~~ 661 (721)
T COG4354 584 SQLCGQFYATLLGLPDIVDHDKIKSALESIYDLNFNASEYCAANGVRPDGSPVNPLSVQPL--SVWPGINFALAAHMIQM 661 (721)
T ss_pred HHHHhHHHHHHcCCCcccchHHHHHHHHHHHhhccccccccccCccCCCCCcCCccccccc--ccccchHHHHHHHHHHh
Confidence 23455555665542 345677777776543332 334443322111 01111 37999988777777777
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 037772 390 GSHEAKSMAQDIAMRWINTNY 410 (472)
Q Consensus 390 G~~ea~~lA~~Ia~rwl~~~~ 410 (472)
|..+ ++.+++++..+..+
T Consensus 662 Gm~d---e~~~~~e~~w~~l~ 679 (721)
T COG4354 662 GMKD---EGFELAENVWNQLK 679 (721)
T ss_pred cchh---hhhHHHHHHHHHHH
Confidence 7774 78888887666544
No 30
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=75.63 E-value=41 Score=34.65 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=86.5
Q ss_pred ceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCC
Q 037772 237 LNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQ 316 (472)
Q Consensus 237 LNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~ 316 (472)
+|..++. .+ .+..++++.|+ ..|.++|+++.+.+.+.+++++.|.++.............. ....
T Consensus 172 ~~~~~h~-------~~-all~l~~~tgd----~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~---~~~~ 236 (384)
T cd00249 172 SNPHMHL-------LE-AMLAAYEATGE----QKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDK---GRHQ 236 (384)
T ss_pred CChhHHH-------HH-HHHHHHHHhCC----HHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcC---CCcC
Confidence 6777766 44 56677888775 45899999999999999999988888755422111000000 0000
Q ss_pred Ccccc---hhcHHHHhhcCCCCc--hHHHHHHHHHHHhCCCCc-cccccccc-cCCC-CcCCCCCcCchHHHHHHHHHhh
Q 037772 317 NNNAF---ASNFVPIWIDLFNSD--TCIVEKVRKSFQSSGLLG-AAGIATSL-TRSG-EQWDFPNGWAPLQHMIVEGLGK 388 (472)
Q Consensus 317 ~~~~~---~s~~~PLw~g~~~~~--~~~a~~vv~~L~~~~~l~-~gGIpTSl-~~sg-qqWD~PN~WaPlq~mii~GL~~ 388 (472)
.+.-. +-+++=| ..+...+ .+.++++++.+.+.+.-. .||+--+. ...+ --+|...-|+ |--.+.+|..
T Consensus 237 ~Pgh~~e~a~~ll~l-~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~--~~E~~~a~~~ 313 (384)
T cd00249 237 EPGHQFEWAWLLLRI-ASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWP--QTEALKAALA 313 (384)
T ss_pred CCchHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECCCCCcccccccccH--HHHHHHHHHH
Confidence 11001 1111111 1222221 245667777666544322 24554422 2222 2566665676 4445555544
Q ss_pred ----cCChhHHHHHHHHHHHHHHHHHHHHH--hcCccccccccc
Q 037772 389 ----SGSHEAKSMAQDIAMRWINTNYVAYK--ETGAMHEKYNVE 426 (472)
Q Consensus 389 ----yG~~ea~~lA~~Ia~rwl~~~~~~~~--~tG~m~EKYd~~ 426 (472)
.|.. ...+.++++.+...+.+. +.|..+..-|+.
T Consensus 314 l~~~tgd~----~~~~~~~~~~~~~~~~~~d~~~G~w~~~~~~~ 353 (384)
T cd00249 314 LAGITGDE----RYWQWYQRAWAYLWRHFIDPEYGLWFGYLDAD 353 (384)
T ss_pred HHHhcCCH----HHHHHHHHHHHHHHHhcCCCCCCcceeeECCC
Confidence 3544 344555666655555443 246666665553
No 31
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=69.87 E-value=84 Score=32.32 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEee
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDY 297 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dy 297 (472)
+--.+|..++..|+ ..|.+.|++..+.|.+.+||++.|-|+..
T Consensus 58 ~i~~~a~a~~~~~~----~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~ 100 (384)
T cd00249 58 QVYCFAVAYLLGWR----PEWLEAAEHGLEYLDRHGRDPDHGGWYFA 100 (384)
T ss_pred HHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHhCcCCCCCCEEEE
Confidence 44556777777765 34788999999999999999985666543
No 32
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=54.36 E-value=36 Score=34.74 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=82.9
Q ss_pred CCCc---chhHHHHHHHHHHHHhhhcccccccccCCC----------CCCCCCCCCCCCCCCchhhHHhcchhh----hh
Q 037772 16 NGNH---PASSFSLLLLFLLLASVSASETVPKVMSKP----------ATGNFDIGPVVPTTPLVTFLERVQESA----LA 78 (472)
Q Consensus 16 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~c~g~l----L~ 78 (472)
|=.| -|--|.++.-.+.-+....+...|.|.-+- .+-.|....+.| +++ +.+-|=+ +.
T Consensus 59 nfdHf~PeAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p-~dv----IivEGLhg~~~~~ 133 (277)
T cd02029 59 NFSHFGPEANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPED-TDL----LFYEGLHGGVVTE 133 (277)
T ss_pred CCCCCCcccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcccccCC-CcE----EEECCCCcccccc
Confidence 4445 455566665555555554445556664311 111122211222 222 2444432 34
Q ss_pred hhccCCC-CCCCCCCCCCC---------------CCHHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccCCC
Q 037772 79 TFGQKDF-DPKLYVDLSLK---------------FDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEP 142 (472)
Q Consensus 79 ~vq~~~F-DsKtFVD~~~k---------------~~~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p 142 (472)
...++++ |=|-|||.... ++.+.|++.|.+.+. +-.+||.--|..+.--++-+.-
T Consensus 134 ~~~lr~~~DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrmp---------dy~~yI~PQ~~~tDI~fqr~p~ 204 (277)
T cd02029 134 GYNVAQHADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRMP---------DYINYICPQFSRTDINFQRVPT 204 (277)
T ss_pred cHHHHHhCCeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhCc---------hHHhhCCcccccCcEEEeccCc
Confidence 4556664 99999997653 367777777766652 4567777666655444443333
Q ss_pred CCCCCCCcCcCCC-CC--ChhHHHHHHHHHHhcccccc--cccCCccCCCC-----ccccccCCCceeecCCCc
Q 037772 143 PDFVPEPDGFLPK-VK--NPQVRAWALEVHALWKNLSR--RVSCSVLDRPE-----FHTLLPLPGPVVIPGSRF 206 (472)
Q Consensus 143 ~d~~~~p~~fl~~-I~--d~~~r~~a~~i~~lW~~L~R--~~~~~v~~~~~-----~~Sliplp~pfIVPGGRF 206 (472)
.| ++|| |..+ |. |+++- .-| .++ .+ .-|- ..|++.-+|+.|||||.-
T Consensus 205 vd-ts~p--f~~~~~p~~~es~~------------vi~~~~~~-~~-d~~~~~~~~~~~~~s~~~~~v~~g~~~ 261 (277)
T cd02029 205 VD-TSNP--FIARDIPTADESFV------------VIHFRKPW-GI-DFPYLLNMLHDSFMSRPNTIVVPGGKM 261 (277)
T ss_pred cc-CCCc--ccccCCCCCCcceE------------EEEecCCC-CC-CHHHHHHhhccchhcCCCcEEecCchH
Confidence 34 5677 5433 31 33221 111 111 11 0011 357788899999999974
No 33
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=47.96 E-value=12 Score=38.55 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=50.3
Q ss_pred eeecCCCcccceeecceEEEecCCCcccccccccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 037772 199 VVIPGSRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQAR 278 (472)
Q Consensus 199 fIVPGGRFrE~YYWDSYwii~d~~~L~si~t~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~r 278 (472)
.||-|||+++.| +.|..|.++-.+.+|---|+-. ....+..++++.|+.++|++-...-+.-
T Consensus 121 LIIiggR~ak~y-----------d~l~kiAPti~l~~d~~n~~~S-------~~~n~e~Lg~IFgkE~eAk~~~~~id~~ 182 (320)
T COG4607 121 LIIIGGRAAKAY-----------DKLSKIAPTIDLGADTANLIES-------TKQNIETLGKIFGKEEEAKELLADIDAS 182 (320)
T ss_pred EEEECcHHHHHH-----------HHHHhhCCeEEeccchHHHHHH-------HHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 899999999877 5788888866666665335555 8889999999999998887665555444
Q ss_pred HHHHHh
Q 037772 279 KAAIDS 284 (472)
Q Consensus 279 k~AI~~ 284 (472)
.+++.+
T Consensus 183 i~~~k~ 188 (320)
T COG4607 183 IAAAKE 188 (320)
T ss_pred HHHHHH
Confidence 444443
No 34
>COG3537 Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]
Probab=46.89 E-value=21 Score=40.28 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEE
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWL 295 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~ 295 (472)
+.-.+|.+|+.+|+.++|+.|+++++..+ .+||.++|+-.
T Consensus 489 ~DfaiA~vAk~lG~te~A~~y~arS~nwr-----nlfn~~tGfmr 528 (768)
T COG3537 489 DDFAIAQVAKSLGDTEEAKVYQARSQNWR-----NLFNPDTGFMR 528 (768)
T ss_pred hHHHHHHHHHHhcChHHHHHHHHHHHHHH-----hhcCccccccc
Confidence 45678999999999999999999998885 57888887543
No 35
>PF08760 DUF1793: Domain of unknown function (DUF1793); InterPro: IPR014870 This domain is found at the C terminus of a glutaminase protein from fungi []. It is also found as a single domain protein in Bacteroides thetaiotaomicron.
Probab=46.71 E-value=2.6e+02 Score=26.52 Aligned_cols=142 Identities=12% Similarity=0.170 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCCCcccchhcHHHHh--
Q 037772 252 ELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIW-- 329 (472)
Q Consensus 252 e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~~~~~~s~~~PLw-- 329 (472)
-..+++|++.+|+.++++.|.+.|+.......+.--|.. |-.+....... -+-+-.+.|+
T Consensus 3 i~A~s~ia~~~G~~~~a~~Y~~~A~~~a~~W~~~a~~~~-g~H~~L~Y~~~-----------------~sWsl~YNL~~D 64 (171)
T PF08760_consen 3 IGAMSEIASMLGHTEDAANYSDIAKSYASQWQTLAISTD-GDHYTLAYDDP-----------------GSWSLKYNLYWD 64 (171)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhhccCC-CCeEEeecCCC-----------------CCcccccchHHH
Confidence 356899999999999999999999999888877766433 33333322111 1112222222
Q ss_pred ----hcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 037772 330 ----IDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRW 405 (472)
Q Consensus 330 ----~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea~~lA~~Ia~rw 405 (472)
.++.|+ +..+.-.+.... ...++|+|-- |. ..|.-.-|+++-+-..... ..+.+
T Consensus 65 kLLgl~lfp~--~Vy~~q~~~Y~~--~~~~yGlPLD---sR------~~ytKsDW~~wtAa~a~~~---------~r~~~ 122 (171)
T PF08760_consen 65 KLLGLNLFPE--SVYDMQSAFYPT--VQNKYGLPLD---SR------HTYTKSDWEMWTAALASDD---------TRDAF 122 (171)
T ss_pred HhcCcCCCcH--HHHHHHHHHHHH--HHHHcCCccC---CC------CcccHHHHHHHHHHHCCHH---------HHHHH
Confidence 345553 233333333221 1256798842 22 2355666777665432222 33445
Q ss_pred HHHHHHHHHhc---CcccccccccCCCCCCC
Q 037772 406 INTNYVAYKET---GAMHEKYNVEKCGDIGG 433 (472)
Q Consensus 406 l~~~~~~~~~t---G~m~EKYd~~~~g~~Gg 433 (472)
++.+++-..+| ..|---|++.++...|+
T Consensus 123 i~~v~~~~~~t~~~~pftD~y~t~~g~~~~~ 153 (171)
T PF08760_consen 123 IDPVWKFANETPSRVPFTDWYDTTTGKQPGG 153 (171)
T ss_pred HHHHHHHHhCCCCCCCccceeECCCCCcCCC
Confidence 55544444443 46889999998765553
No 36
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=43.05 E-value=11 Score=41.51 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeee
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYW 298 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd 298 (472)
+.-.||++|+.||++++++.|.+||+.. +.+||+++|++.-.+
T Consensus 243 ~D~~iA~~A~~LG~~~~~~~~~~Rs~ny-----~n~fd~~tgf~~pr~ 285 (502)
T PF07971_consen 243 DDWAIAQMAKALGKKEDADKFLKRSQNY-----RNVFDPETGFFRPRN 285 (502)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHCCGGGG-----GGGEETTTTCE--B-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH-----HHHcCCccCCccccC
Confidence 4566999999999999999999998765 468999998777544
No 37
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=37.45 E-value=19 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.582 Sum_probs=19.7
Q ss_pred HHHHhcCCcCCCCCCChHHHHHHH
Q 037772 103 VTAFHKLPRNATGSVSIPDFKEFM 126 (472)
Q Consensus 103 l~~f~~l~~~~~~~~~~~~L~~FV 126 (472)
-+.|+++-.+.+|.++.+|+++||
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 456888877778889999999986
No 38
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=36.96 E-value=1.3e+02 Score=30.82 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeee
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYW 298 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd 298 (472)
+--..|.+++ +|++ .|.+.|++-.+-|.+.+||.+.|.|+-..
T Consensus 26 ~~~~fa~a~~-~g~~----~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~ 68 (346)
T PF07221_consen 26 QLYTFARAYR-LGRP----EYLELAEHGFDFLRKHFRDPEYGGWYRSL 68 (346)
T ss_dssp HHHHHHHHHH-TTSH----HHHHHHHHHHHHHHHTTBTTTTSSBSSEE
T ss_pred HHHHHHHHHh-cCch----hHHHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 3334566666 7743 28889999999999999999977675333
No 39
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=29.25 E-value=1.1e+02 Score=20.24 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 037772 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAI 282 (472)
Q Consensus 251 ~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI 282 (472)
....|+.++...|+.++|..+.+++-.+++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 45678888999999999999999988777665
No 40
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=26.97 E-value=33 Score=36.37 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=26.3
Q ss_pred cCcccccccccCCCCCCCCCcccC--------CCCccchHHHH
Q 037772 416 TGAMHEKYNVEKCGDIGGGGEYIP--------QTGFGWSNGVV 450 (472)
Q Consensus 416 tG~m~EKYd~~~~g~~GgGGEY~~--------Q~GFGWTNgVv 450 (472)
||.+||-|....+...++||.|.- ..+.||+-|+-
T Consensus 279 TG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAvGfai~le 321 (392)
T PRK12421 279 TGLVFAAYIPGRGQALARGGRYDGIGEAFGRARPATGFSMDLK 321 (392)
T ss_pred CCCEEEEEECCCCCcccCCCCccchhHhhCCCCCCceEEeeHH
Confidence 799999999876666899999941 35667766643
No 41
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=26.29 E-value=48 Score=21.87 Aligned_cols=28 Identities=25% Similarity=0.642 Sum_probs=22.7
Q ss_pred HHHHHHhcCCcCCCCCCChHHHHHHHHh
Q 037772 101 AIVTAFHKLPRNATGSVSIPDFKEFMHE 128 (472)
Q Consensus 101 ~il~~f~~l~~~~~~~~~~~~L~~FV~~ 128 (472)
++.++|+..-++.+|.++.+++.+.+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4667888888888888999999988764
No 42
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=25.85 E-value=8.5e+02 Score=26.18 Aligned_cols=163 Identities=16% Similarity=0.175 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhccCCCcccchhcHHHHhhc--CCCCchHHHHH----HH
Q 037772 271 FLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWID--LFNSDTCIVEK----VR 344 (472)
Q Consensus 271 y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~~~~~~~~~s~~~PLw~g--~~~~~~~~a~~----vv 344 (472)
|.+.+..=.+.+.++.=|++.|.|+=.+ .++++- ..++..| .-.+.|++- ++....+++.+ ..
T Consensus 76 ~~~~v~hG~~y~~~~~R~~~gg~~~~~~-~dg~~~---------Dat~d~Y-~haFallA~A~~a~a~~~~a~~~~~~a~ 144 (388)
T COG2942 76 WLDAVAHGIAYLARVGRDPEGGWYFALD-NDGGPV---------DATKDLY-GHAFALLAAAHAATAGPPRADELLDEAL 144 (388)
T ss_pred HHHHHHhHHHHHHhcCcCCCCCeEEEec-CCCCcc---------cccHhHH-HHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 8888888888888888777666555333 333210 1122222 222222221 11111122222 22
Q ss_pred HHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 037772 345 KSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKS---GSHEAKSMAQDIAMRWINTNYVAYKETGAMHE 421 (472)
Q Consensus 345 ~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~y---G~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~E 421 (472)
+-+++ .+..... |-..+.-...|..|-+=-|+.||+=-=|.-| |.......|.+||+..+.-... .++|.|.|
T Consensus 145 ~~l~~-~~~~~~~-pl~~~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d--~~~g~v~E 220 (388)
T COG2942 145 DVLER-RFWREEH-PLGGFEEDNPGSAPLGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFAD--AESGLVRE 220 (388)
T ss_pred HHHHH-HHhhhcC-CcccccccCCCCCccCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhh--cccCcHhh
Confidence 22221 2221111 2223333445666666666666653333333 3322223444555444433222 36899999
Q ss_pred cccccC---CCCCCCCCcccCCCCccchHHHH
Q 037772 422 KYNVEK---CGDIGGGGEYIPQTGFGWSNGVV 450 (472)
Q Consensus 422 KYd~~~---~g~~GgGGEY~~Q~GFGWTNgVv 450 (472)
.||..= .+-.|.|. ++-.+|=|.-.++
T Consensus 221 ~fd~dW~p~~~frg~~~--ePGH~fEW~~Lll 250 (388)
T COG2942 221 HFDHDWNPAHGFRGRGI--EPGHQFEWAWLLL 250 (388)
T ss_pred hccccCCcCCCcccCCC--CCchHHHHHHHHH
Confidence 999873 23345554 3567788876654
No 43
>PF11724 YvbH_ext: YvbH-like oligomerisation region; InterPro: IPR021722 This domain is found at the C terminus of a group of bacterial uncharacterised proteins. This domain is composed of a helical hairpin that appears to mediate oligomerisation based on the known structure. ; PDB: 3B77_D.
Probab=25.57 E-value=45 Score=26.36 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--Ccccccc
Q 037772 396 SMAQDIAMRWINTNYVAYKET--GAMHEKY 423 (472)
Q Consensus 396 ~lA~~Ia~rwl~~~~~~~~~t--G~m~EKY 423 (472)
+...+.|-.||....+.|... |..||||
T Consensus 29 k~ln~~aF~Wl~~~~~~y~~KDFg~VFeKY 58 (61)
T PF11724_consen 29 KELNEFAFNWLEDHRKQYTVKDFGDVFEKY 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHS-S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 356688899999999988864 8999998
No 44
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=23.46 E-value=55 Score=27.04 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=42.3
Q ss_pred hhhhhhhccCCC---CCCCCCCCCCCCCHHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccC-CCCCCCCCC
Q 037772 74 ESALATFGQKDF---DPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYA-EPPDFVPEP 149 (472)
Q Consensus 74 g~lL~~vq~~~F---DsKtFVD~~~k~~~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~-~p~d~~~~p 149 (472)
-+||+.||...| |-.-|.|..|. =.+.|+.|++.... .++..++|-+.|-=.-....... .|=.|++.|
T Consensus 2 ~~LL~~I~~~~Fa~~dl~LyLDTHP~--d~~Al~~y~~~~~~-----~~~l~~~Ye~~yGPLt~~~~~~~~~~w~Wi~~P 74 (78)
T PF12652_consen 2 EELLREIQEVSFAVVDLNLYLDTHPD--DQEALEYYNEYSKQ-----RKQLKKEYEKRYGPLTNFGVSPSRDPWQWIEEP 74 (78)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCC--cHHHHHHHHHHHHH-----HHHHHHHHHHHhCCCcCCCcCCCCCCcccCCCC
Confidence 367999999887 99999999983 34567888887642 34455666555432111111111 334577766
No 45
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=23.39 E-value=1.7e+02 Score=23.02 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 037772 253 LDIVSMAQIVGDNKTAESFLKAAQARKAAIDS 284 (472)
Q Consensus 253 ~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~ 284 (472)
+..|.=|+.-||.++|..|.+.++.+..+|..
T Consensus 12 k~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~ 43 (59)
T smart00685 12 KQAALQAKRAGDEEKARRHLRIAKQFDDAIKA 43 (59)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHH
Confidence 33455678889999999999999999999985
No 46
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=21.58 E-value=47 Score=33.89 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=18.3
Q ss_pred cCcccccccccCCCCCCCCCcc
Q 037772 416 TGAMHEKYNVEKCGDIGGGGEY 437 (472)
Q Consensus 416 tG~m~EKYd~~~~g~~GgGGEY 437 (472)
||.+||-|....+...++||.|
T Consensus 264 tGivFe~~~~~~~~~i~~GGRY 285 (314)
T TIGR00443 264 TGLIFEGYAPGLGAPIAGGGRY 285 (314)
T ss_pred cceEEEEEECCCCCcccCCccH
Confidence 6999999986555568899999
No 47
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=21.24 E-value=41 Score=35.52 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=27.7
Q ss_pred cCcccccccccCCCCCCCCCcccC--------CCCccchHHHHH
Q 037772 416 TGAMHEKYNVEKCGDIGGGGEYIP--------QTGFGWSNGVVL 451 (472)
Q Consensus 416 tG~m~EKYd~~~~g~~GgGGEY~~--------Q~GFGWTNgVvL 451 (472)
||.+||-|....+...++||.|.- ..+-|++-|+-.
T Consensus 272 tG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAvGfai~ldr 315 (391)
T PRK12292 272 TGIVFEGYVDGVGNPIASGGRYDDLLGRFGRARPATGFSLDLDR 315 (391)
T ss_pred cceEEEEEECCCCCcccCCcchhhHHHHcCCCCCCceEEeeHHH
Confidence 699999998766656899999943 567788777543
No 48
>PF03475 3-alpha: 3-alpha domain; InterPro: IPR005163 This small triple helical domain has been predicted to assume a topology similar to helix-turn-helix domains. These domains are found at the C terminus of proteins related to the YiiM protein (P32157 from SWISSPROT) from Escherichia coli.; PDB: 1O67_C 1O65_C.
Probab=21.17 E-value=60 Score=23.73 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=25.6
Q ss_pred ceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 037772 237 LNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKA 280 (472)
Q Consensus 237 LNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~ 280 (472)
+|.++|. ...+.+.+.+++.-..-+..|++.+++|.+
T Consensus 7 ~~~~~~~-------~~~n~~~l~~ll~~~~La~~Wr~~~~kRL~ 43 (47)
T PF03475_consen 7 VNRLLYH-------DRLNPEALERLLALPALAESWRKSFEKRLE 43 (47)
T ss_dssp HHHHHHT-------S---HHHHHHHHTSTT--HHHHHHHHHHHH
T ss_pred HHHHHhC-------CCCCHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 4666777 666778888888888899999999888765
Done!