BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037776
         (716 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N6X|A Chain A, Crystal Structure Of A Putative Glutathionylspermidine
           Synth (Mfla_0391) From Methylobacillus Flagellatus Kt At
           2.35 A R
          Length = 474

 Score = 33.5 bits (75), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 7/39 (17%)

Query: 419 NGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHF 457
           +G+ Y +E        R+   ++F E+ +R+P APVEH+
Sbjct: 168 SGVSYXLEN-------RKXXXRLFPELFRRYPVAPVEHY 199


>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
           Kinase From Bacillus Stearothermophilus At 1.65
           Angstroms
          Length = 394

 Score = 29.6 bits (65), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 242 FQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMD-H 300
            +H +K I A +L R K                  G V  E +L   AKR   +L     
Sbjct: 48  IEHGAKVILASHLGRPK------------------GKVVEELRLDAVAKRLGELLERPVA 89

Query: 301 EDGYAILNQFKDEMERINSRNIVLLETKRHEYGEER 336
           +   A+ ++ K  ++R+N  +++LLE  R   GEE+
Sbjct: 90  KTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEK 125


>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
          Length = 1015

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/49 (22%), Positives = 27/49 (55%)

Query: 516 DKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTV 564
           + L ++  Q ++  ++S +V++  L     E +   VW+W+ + +T T+
Sbjct: 529 NTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTI 577


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,212,844
Number of Sequences: 62578
Number of extensions: 857856
Number of successful extensions: 1581
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 9
length of query: 716
length of database: 14,973,337
effective HSP length: 106
effective length of query: 610
effective length of database: 8,340,069
effective search space: 5087442090
effective search space used: 5087442090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)