BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037776
         (716 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6M1B4|Y002_METMP UPF0425 pyridoxal phosphate-dependent protein MMP0002
           OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0002
           PE=3 SV=1
          Length = 354

 Score = 40.8 bits (94), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 307 LNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLV 366
           LN  KD  ER    ++ + E ++ EY +  T +  KN     L     K+   Y  V + 
Sbjct: 258 LNNLKDAFERAEKVDLSVFEAEKIEYKKTPTGFIIKNSSEEKLIETALKLLENYGIVTIT 317

Query: 367 AAALDGNNGILPIAFCEVHVEDL-DSWVFFIKNINNALR 404
           AA + G +  + I FC    E + D +V  I  + N+L+
Sbjct: 318 AAGMPGASKNIRIDFCSKDAERISDEYV--INAVLNSLK 354


>sp|Q98LU4|GFA_RHILO Glutathione-dependent formaldehyde-activating enzyme OS=Rhizobium
           loti (strain MAFF303099) GN=gfa PE=3 SV=2
          Length = 189

 Score = 34.7 bits (78), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 579 VLVEENGNRLKLIDTTSIIFYLNMEAQSCS-CGLRQKSGIPCAHACKGIQLIMGNVEEYV 637
           V V ENG++LK++D +++I     +  +C+ CG+     +   HA KG+  I  + E +V
Sbjct: 72  VTVTENGDKLKVVDASALI-----QRHACTGCGVHMHGPVERDHAFKGLTFI--HPERFV 124

Query: 638 DNMMSVQNFCS 648
           ++  S   F +
Sbjct: 125 EDGWSPPGFTA 135


>sp|B8I1A2|RUVC_CLOCE Crossover junction endodeoxyribonuclease RuvC OS=Clostridium
           cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
           / H10) GN=ruvC PE=3 SV=1
          Length = 166

 Score = 34.3 bits (77), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 393 VFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAV 433
           +FF KNI  AL + HG G+ ++    +GID  I E+ P  V
Sbjct: 69  LFFNKNIKTALTVGHGRGVAVLAAAKSGID--IFEYTPLQV 107


>sp|A3DBU2|RUVC_CLOTH Crossover junction endodeoxyribonuclease RuvC OS=Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237) GN=ruvC PE=3
           SV=1
          Length = 162

 Score = 33.9 bits (76), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 384 VHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAV 433
           + VE+L    FF KNI  AL + HG G+ ++    +GID  + E+ P  V
Sbjct: 64  IAVEEL----FFNKNIKTALAVGHGRGVAVLAAAQSGID--VFEYTPIQV 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,125,116
Number of Sequences: 539616
Number of extensions: 11635388
Number of successful extensions: 39999
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 39848
Number of HSP's gapped (non-prelim): 150
length of query: 716
length of database: 191,569,459
effective HSP length: 125
effective length of query: 591
effective length of database: 124,117,459
effective search space: 73353418269
effective search space used: 73353418269
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)