Query 037776
Match_columns 716
No_of_seqs 305 out of 1374
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj2_A Probable WRKY transcrip 89.3 0.73 2.5E-05 37.3 5.9 48 191-238 29-77 (78)
2 2ayd_A WRKY transcription fact 88.4 0.79 2.7E-05 36.9 5.6 41 198-238 34-74 (76)
3 3hot_A Transposable element ma 87.4 13 0.00045 38.4 16.3 59 359-420 186-253 (345)
4 1nc8_A Nucleocapsid protein; H 75.0 1.1 3.9E-05 28.8 1.3 18 692-709 3-20 (29)
5 1cxq_A Avian sarcoma virus int 73.5 16 0.00053 33.1 9.5 70 346-422 11-80 (162)
6 3l3u_A POL polyprotein; DNA in 70.4 9.6 0.00033 34.5 7.2 65 346-422 9-73 (163)
7 1c0m_A Protein (integrase); HI 69.4 18 0.00062 35.3 9.5 70 346-422 10-79 (238)
8 2rpr_A Flywch-type zinc finger 67.7 6.7 0.00023 32.2 4.9 46 186-238 26-74 (87)
9 1ex4_A Integrase; SH3-like dom 59.4 26 0.00088 34.1 8.4 64 347-422 10-73 (239)
10 3kks_A Integrase, IN; beta-str 54.3 36 0.0012 29.8 7.8 66 347-424 3-68 (152)
11 1dsq_A Nucleic acid binding pr 51.3 6.1 0.00021 24.6 1.3 15 696-710 3-17 (26)
12 3f9k_A Integrase; protein-prot 50.8 32 0.0011 32.6 7.2 64 347-422 60-123 (210)
13 2ec7_A GAG polyprotein (PR55GA 50.2 7.6 0.00026 28.2 1.9 14 695-708 6-19 (49)
14 1u6p_A GAG polyprotein; MLV, A 42.2 15 0.00052 27.5 2.5 17 693-709 21-37 (56)
15 1k6y_A Integrase; HIV-1, domai 40.1 67 0.0023 30.2 7.6 64 346-421 58-121 (212)
16 1a6b_B Momulv, zinc finger pro 39.6 14 0.00047 25.7 1.8 16 694-709 9-24 (40)
17 1fme_A FSD-EY peptide; beta-BE 35.4 27 0.00093 21.2 2.3 19 164-182 7-25 (28)
18 2ysa_A Retinoblastoma-binding 32.6 17 0.00059 27.2 1.4 16 694-709 6-21 (55)
19 3hph_A Integrase, IN; protein- 32.4 1.2E+02 0.0039 28.7 8.0 66 347-424 61-126 (219)
20 1bco_A MUA domain II, bacterio 32.1 78 0.0027 32.4 7.1 72 346-422 16-95 (327)
21 2a51_A Nucleocapsid protein; s 29.0 21 0.00072 24.3 1.3 13 697-709 2-14 (39)
22 3av9_A Integrase, IN; protein- 28.4 1.3E+02 0.0046 27.4 7.5 66 346-423 29-94 (183)
23 1q1v_A DEK protein; winged-hel 27.2 1.3E+02 0.0044 23.5 5.8 41 246-286 14-57 (70)
24 4fp9_B Mterf domain-containing 27.0 24 0.00083 36.7 2.0 13 63-75 266-278 (335)
25 1pdn_C Protein (PRD paired); p 26.7 83 0.0028 26.5 5.3 37 251-288 82-123 (128)
26 2xzm_5 Ribosomal protein S26E 26.0 46 0.0016 28.8 3.2 26 674-703 2-28 (119)
27 2lju_A Putative oxidoreductase 24.1 88 0.003 26.7 4.6 32 160-195 57-88 (108)
28 2bl6_A Nucleocapsid protein P1 24.1 28 0.00094 23.4 1.2 13 697-709 2-14 (37)
29 2ayu_A Nucleosome assembly pro 23.0 25 0.00087 37.6 1.2 27 53-79 330-356 (417)
30 1k78_A Paired box protein PAX5 23.0 98 0.0034 27.3 5.2 38 251-288 97-138 (149)
31 2x78_A Integrase; viral protei 23.0 1.6E+02 0.0055 27.0 6.9 69 347-423 14-83 (200)
32 2bw3_A Transposase; DNA recomb 22.5 1.8E+02 0.006 31.8 8.2 65 374-443 129-195 (534)
33 2l0z_A Glycoprotein G2; zinc-b 22.2 25 0.00086 24.3 0.6 16 604-619 21-36 (42)
34 1lyp_A CAP18; lipopolysacchari 21.7 71 0.0024 20.0 2.5 16 60-75 2-17 (32)
35 2ca6_A RAN GTPase-activating p 21.6 51 0.0018 34.2 3.3 10 57-66 322-331 (386)
36 1a1t_A Nucleocapsid protein; s 20.2 23 0.0008 26.1 0.2 12 696-707 13-24 (55)
37 2li8_A Protein LIN-28 homolog 20.0 62 0.0021 25.6 2.7 14 695-708 46-59 (74)
38 2k27_A Paired box protein PAX- 20.0 1.5E+02 0.0051 26.5 5.8 41 251-291 90-134 (159)
No 1
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=89.31 E-value=0.73 Score=37.26 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=37.9
Q ss_pred EEEeecC-eEEEEEeccCCCceEEEEEEecCcceEEEEEecCccccccc
Q 037776 191 CVMENRA-HAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR 238 (716)
Q Consensus 191 ~~~kS~~-~r~~~~C~~~gCpwri~as~~~~~~~w~V~~~~~~HtC~~~ 238 (716)
+.++.++ -|--++|+..+|+.+-.+.+........+++|..+|||+..
T Consensus 29 K~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 29 KVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp ECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred cccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 3334433 46669999999999999998877777788899999999864
No 2
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=88.43 E-value=0.79 Score=36.86 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=35.4
Q ss_pred eEEEEEeccCCCceEEEEEEecCcceEEEEEecCccccccc
Q 037776 198 HAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR 238 (716)
Q Consensus 198 ~r~~~~C~~~gCpwri~as~~~~~~~w~V~~~~~~HtC~~~ 238 (716)
-|--++|+..||+.+=.+.+..+.....++++..+|||...
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 35569999999999999998777777888999999999864
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=87.40 E-value=13 Score=38.37 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=38.9
Q ss_pred ccCceeEEEEEEcCCCceEEEEEEEee---cCCchhHHHHHHHHHHHcc--cCC----CCCeEEEcCCcch
Q 037776 359 PYNSVMLVAAALDGNNGILPIAFCEVH---VEDLDSWVFFIKNINNALR--LDH----GEGLCIMGDGDNG 420 (716)
Q Consensus 359 ~y~~~ll~avg~d~~~~~~pla~alv~---~E~~es~~Wfl~~l~~~~~--~~~----~~~~~iitD~~~a 420 (716)
.+.+.++++.+.+..| .+++.++. .-+.+.|.-+|+.+...+. .+. ..+.+|+.|....
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~ 253 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPS 253 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCc
Confidence 3556677777777777 56777776 4577788888877655432 011 3477899999653
No 4
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=75.04 E-value=1.1 Score=28.84 Aligned_cols=18 Identities=6% Similarity=0.281 Sum_probs=14.5
Q ss_pred CCCeeeCCcCCcCCCCCC
Q 037776 692 SSRARQCIENNSDAATNN 709 (716)
Q Consensus 692 ~k~~~~Cs~C~~~GHn~~ 709 (716)
+++.+.|.+|++.||..+
T Consensus 3 ~r~~~~C~nCgk~GH~ar 20 (29)
T 1nc8_A 3 QRKVIRCWNCGKEGHSAR 20 (29)
T ss_dssp CCCCCBCTTTSCBSSCGG
T ss_pred CCCCCEEEECCccccCHh
Confidence 445689999999999754
No 5
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=73.46 E-value=16 Score=33.14 Aligned_cols=70 Identities=10% Similarity=-0.070 Sum_probs=45.6
Q ss_pred ccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHH
Q 037776 346 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGID 422 (716)
Q Consensus 346 r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~ 422 (716)
..++.+|-|+.... +|..+.++.+|...+. ++|+.+- +.+.+.-.-+|+.+.... +.|.+|.||+.....
T Consensus 11 ~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~ 80 (162)
T 1cxq_A 11 LQIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFT 80 (162)
T ss_dssp CCEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHH
T ss_pred CCEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHH----CCCeEEEeCCchhhh
Confidence 34789999887543 3445566777776554 5667665 566665555555555544 246799999998764
No 6
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=70.40 E-value=9.6 Score=34.53 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=44.4
Q ss_pred ccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHH
Q 037776 346 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGID 422 (716)
Q Consensus 346 r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~ 422 (716)
-.++.+|.|+..++ ++++.+|...+.. +++.+ ..++.+...-+|..+....+ +.+|.||+.....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f~ 73 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNFT 73 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhhh
Confidence 35889999998653 4666777766654 66665 45677666666666666652 3689999988653
No 7
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=69.44 E-value=18 Score=35.30 Aligned_cols=70 Identities=9% Similarity=-0.103 Sum_probs=47.6
Q ss_pred ccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHH
Q 037776 346 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGID 422 (716)
Q Consensus 346 r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~ 422 (716)
..++.+|.|+.... ++..+.++.+|..-+ +++|+.+- .++.+.-.-+|..+....+ .|.+|.||+.....
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG----RPKAIKTDNGSCFT 79 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEEECSCHHHH
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC----CCcEEEECCCCccc
Confidence 35889999987643 334555666776554 55677765 7777776666666666552 46799999998764
No 8
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=67.74 E-value=6.7 Score=32.21 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=33.3
Q ss_pred cCceEEEEeecCeEEEEEecc---CCCceEEEEEEecCcceEEEEEecCccccccc
Q 037776 186 DGFKLCVMENRAHAVSYECSD---LRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR 238 (716)
Q Consensus 186 ~gf~~~~~kS~~~r~~~~C~~---~gCpwri~as~~~~~~~w~V~~~~~~HtC~~~ 238 (716)
.||.|...+....+....|.. .+|+.+|.... . . | .....|||++.
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~--~--~--~-~~~~~HnH~p~ 74 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG--H--R--I-MVMRSHCHQPD 74 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET--T--E--E-EECSCCSSCCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC--C--C--E-ECCCCcCCCCc
Confidence 477777777667778899986 58999988653 2 2 2 24677999874
No 9
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=59.41 E-value=26 Score=34.15 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=38.2
Q ss_pred cEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHH
Q 037776 347 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGID 422 (716)
Q Consensus 347 ~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~ 422 (716)
.++.+|.|+..++| +++ .+|..-+ +++|+.+- .++.....-++..+.... ++.+|.||+.....
T Consensus 10 ~~w~~D~t~~~g~~---~l~--~vD~~Sr-~i~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~eF~ 73 (239)
T 1ex4_A 10 GIWQLDCTHLEGKV---ILV--AVHVASG-YIEAEVIP-AETGQETAYFLLKLAGRW-----PVKTIHTDNGSNFT 73 (239)
T ss_dssp GEEEEEEEEETTEE---EEE--EECTTTC-CEEEECCS-SSSTTHHHHHHHHHHHHS-----CCCEEEECCCHHHH
T ss_pred CEEEEeccccCCeE---EEE--EEECCCC-eEEEEEeC-CCCHHHHHHHHHHHHHhc-----CCcEEEecCcHHHH
Confidence 48899999983332 333 3465444 55677554 455544444444443333 35899999998764
No 10
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=54.28 E-value=36 Score=29.81 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=45.4
Q ss_pred cEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHH
Q 037776 347 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYA 424 (716)
Q Consensus 347 ~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~A 424 (716)
.++.+|.|+..++ ++++.+|..-+.. +++.+ .+++.+...-+|..+.... + |..|.||+.......
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--g---p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRY--T---VLHLHSDNGPCFTAH 68 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHS--C---CSEEEECSCHHHHSH
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHh--C---CcEEecCCchHhhHH
Confidence 5788999988432 4556677666554 56655 4677777666666666555 2 889999999887543
No 11
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=51.35 E-value=6.1 Score=24.62 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=12.8
Q ss_pred eeCCcCCcCCCCCCC
Q 037776 696 RQCIENNSDAATNNP 710 (716)
Q Consensus 696 ~~Cs~C~~~GHn~~~ 710 (716)
.+|-+|++.||..+.
T Consensus 3 ~~Cf~CG~~GH~ard 17 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRD 17 (26)
T ss_dssp CBCTTTCCBSSCTTT
T ss_pred CeeEeCCCCCccccc
Confidence 579999999998763
No 12
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=50.85 E-value=32 Score=32.63 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=41.2
Q ss_pred cEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHH
Q 037776 347 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGID 422 (716)
Q Consensus 347 ~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~ 422 (716)
.++.+|-|+..++| +++.+|..-+ ++.++.+- +++.+...-+|..+.... + .| +|.||+.....
T Consensus 60 ~~w~~D~~~~~~~y-----~l~~vD~~sr-~~~~~~~~-~~~~~~~~~~l~~~~~~~--g--~~-~i~sDnG~~F~ 123 (210)
T 3f9k_A 60 GTWQMDCTHLEGKI-----IIVAVHVASG-FIEAEVIP-QESGRQTALFLLKLASRW--P--IT-HLHTDNGANFT 123 (210)
T ss_dssp TEEEEEEEEETTEE-----EEEEEETTTT-EEEEEEES-SCCHHHHHHHHHHHHTTS--C--CS-EEEECCCTTTS
T ss_pred CeEeEeecccCCeE-----EEEEEEcCCC-cEEEEEeC-CcchHHHHHHHHHHHHHc--C--CC-EEEeCCCchhh
Confidence 47889988886543 5566677666 56666554 466666665555554444 2 24 59999998653
No 13
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=50.19 E-value=7.6 Score=28.18 Aligned_cols=14 Identities=7% Similarity=0.290 Sum_probs=7.2
Q ss_pred eeeCCcCCcCCCCC
Q 037776 695 ARQCIENNSDAATN 708 (716)
Q Consensus 695 ~~~Cs~C~~~GHn~ 708 (716)
..+|-+|++.||..
T Consensus 6 ~~~C~~Cg~~GH~a 19 (49)
T 2ec7_A 6 VIRCWNCGKEGHSA 19 (49)
T ss_dssp CCBCTTTCCBTCCT
T ss_pred cCeeeecCCCCcCh
Confidence 34555555555543
No 14
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=42.25 E-value=15 Score=27.54 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=13.5
Q ss_pred CCeeeCCcCCcCCCCCC
Q 037776 693 SRARQCIENNSDAATNN 709 (716)
Q Consensus 693 k~~~~Cs~C~~~GHn~~ 709 (716)
....+|-+|++.||-.+
T Consensus 21 ~~~~~C~~Cge~GH~ar 37 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAK 37 (56)
T ss_dssp CCTTBCSSSCCBSSCGG
T ss_pred CCCCcceeCCCCCcccc
Confidence 35579999999999643
No 15
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=40.11 E-value=67 Score=30.20 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=36.8
Q ss_pred ccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchH
Q 037776 346 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGI 421 (716)
Q Consensus 346 r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al 421 (716)
..++.+|.|+..++| +++ .+|..-+ +++++.+- +.+.+...-++..+.... .+.+|.||+....
T Consensus 58 ~~~w~~D~~~~~~~~---~l~--~vD~~Sr-~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~~f 121 (212)
T 1k6y_A 58 PGIWQLDCTHLEGKV---ILV--AVHVASG-YIEAEVIP-AETGQETAYFLLKLAGRW-----PVKTVHTDNGSNF 121 (212)
T ss_dssp TTEEEEEEEEETTEE---EEE--EEETTTT-EEEEEEES-SCCHHHHHHHHHHHHHHS-----CCCEEECCCSTTT
T ss_pred CCeeeEEEecCCCeE---EEE--EEEccCC-cEEEEEec-CcchHHHHHHHHHHHHhc-----CCeEEEcCCCccc
Confidence 357889988873322 333 3465444 45555554 445555444444444444 2379999999865
No 16
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=39.62 E-value=14 Score=25.74 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=13.2
Q ss_pred CeeeCCcCCcCCCCCC
Q 037776 694 RARQCIENNSDAATNN 709 (716)
Q Consensus 694 ~~~~Cs~C~~~GHn~~ 709 (716)
...+|-+|++.||-.+
T Consensus 9 ~~~~C~~Cgk~GH~ar 24 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAK 24 (40)
T ss_dssp CSSSCSSSCCTTCCTT
T ss_pred CCCeeeECCCCCcchh
Confidence 3469999999999754
No 17
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=35.41 E-value=27 Score=21.21 Aligned_cols=19 Identities=42% Similarity=0.817 Sum_probs=17.2
Q ss_pred CCCcEECCHHHHHHHHHHH
Q 037776 164 YHGQRFRDVSHFRKAIEVF 182 (716)
Q Consensus 164 ~vG~~F~s~ee~k~ai~~y 182 (716)
+.|.+|.+..+++.+|..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 6899999999999999765
No 18
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.60 E-value=17 Score=27.17 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=12.7
Q ss_pred CeeeCCcCCcCCCCCC
Q 037776 694 RARQCIENNSDAATNN 709 (716)
Q Consensus 694 ~~~~Cs~C~~~GHn~~ 709 (716)
..+.|-+|++.||--+
T Consensus 6 ~~~~C~kCGk~GH~~k 21 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIK 21 (55)
T ss_dssp SSCCCTTTCCTTSCGG
T ss_pred CCCccccCCCcCcccc
Confidence 3468999999999643
No 19
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=32.44 E-value=1.2e+02 Score=28.68 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=44.1
Q ss_pred cEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHH
Q 037776 347 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYA 424 (716)
Q Consensus 347 ~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~A 424 (716)
.++.+|.|+..++ ++++.+|..-+.. .++.+ .+.+.....-+|..+.... + |.+|.||+......+
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMF--A---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHH--C---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHh--C---CcEEEeCCCchhhhH
Confidence 5778998876543 4566677776655 55554 5556666555665555555 2 789999999887643
No 20
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=32.12 E-value=78 Score=32.38 Aligned_cols=72 Identities=17% Similarity=0.035 Sum_probs=48.6
Q ss_pred ccEEEEeCceecccc---Cc---eeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCe--EEEcCC
Q 037776 346 RRLLAVDGWKINNPY---NS---VMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGL--CIMGDG 417 (716)
Q Consensus 346 r~vi~iD~T~~~~~y---~~---~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~--~iitD~ 417 (716)
..++.+|+|++.... .| ...+++.+|...+ .++|+.+...++.++..-.|....... +.|. .|.+|+
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~----G~P~~~~i~sDn 90 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRY----GIPEDFHITIDN 90 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHH----CEESSCEEECCC
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhc----CCCCCcEEEeeC
Confidence 458888988764320 23 3455666776555 458999998888877776666655554 2455 999999
Q ss_pred cchHH
Q 037776 418 DNGID 422 (716)
Q Consensus 418 ~~al~ 422 (716)
.....
T Consensus 91 G~~f~ 95 (327)
T 1bco_A 91 TRGAA 95 (327)
T ss_dssp TTSTT
T ss_pred chhhc
Confidence 98654
No 21
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=28.95 E-value=21 Score=24.32 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=7.8
Q ss_pred eCCcCCcCCCCCC
Q 037776 697 QCIENNSDAATNN 709 (716)
Q Consensus 697 ~Cs~C~~~GHn~~ 709 (716)
+|-+|++.||..+
T Consensus 2 ~C~~Cg~~GH~a~ 14 (39)
T 2a51_A 2 TCFNCGKPGHTAR 14 (39)
T ss_dssp BCTTTCCBSSCTT
T ss_pred eeeccCCCCcccc
Confidence 4666666666544
No 22
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=28.40 E-value=1.3e+02 Score=27.36 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=39.7
Q ss_pred ccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHH
Q 037776 346 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDY 423 (716)
Q Consensus 346 r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~ 423 (716)
..++.+|.|+..++| +|+ .+|..-+.. +|+.+- +++.....-++..+.... ++.+|.||+.....+
T Consensus 29 ~~~w~~D~~~~~g~~---~l~--~vD~~Sr~~-~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~ef~s 94 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV---ILV--AVHVASGYI-EAEVIP-AETGQETAYFLLKLAGRW-----PVKTVHTDNGSNFTS 94 (183)
T ss_dssp TTEEEEEEEEETTEE---EEE--EEETTTTEE-EEEEES-SCCHHHHHHHHHHHHHHS-----CCCEEECSSHHHHHC
T ss_pred CCEEEEeccccCCcE---EEE--EEECCCCCE-EEEEeC-CccchHHHHHHHHHHHHc-----CCcEEEecCchhcch
Confidence 458899999884432 333 446655554 676554 455554444444444444 238999999987653
No 23
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=27.20 E-value=1.3e+02 Score=23.50 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=32.4
Q ss_pred hhHHHHHHhhhhhc-C-CCCCHHHHHHHHHHHh-CcccCHHHHH
Q 037776 246 SKWISAIYLHRWKL-Q-PNLRTVDIKDEIKATY-GVVCHEAKLL 286 (716)
Q Consensus 246 s~~ia~~~~~~i~~-~-~~~~~~~I~~~l~~~~-g~~~s~~k~~ 286 (716)
-.-|...+.+.|++ + .+++.++|...|.+.+ |++++-.+.+
T Consensus 14 d~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~ 57 (70)
T 1q1v_A 14 DEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDF 57 (70)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHH
Confidence 44567777788875 3 5889999999999999 9999966543
No 24
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=27.02 E-value=24 Score=36.71 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhh
Q 037776 63 KCRRMRRKIAREL 75 (716)
Q Consensus 63 ~~~~~~~~~~~~~ 75 (716)
.|..|++-+.+|+
T Consensus 266 ey~~F~k~~~~e~ 278 (335)
T 4fp9_B 266 EFQVFKKLLAREE 278 (335)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4566666666666
No 25
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.72 E-value=83 Score=26.48 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=29.9
Q ss_pred HHHhhhhhcCCCCCHHHHHHHHHHHhCc-----ccCHHHHHHH
Q 037776 251 AIYLHRWKLQPNLRTVDIKDEIKATYGV-----VCHEAKLLCA 288 (716)
Q Consensus 251 ~~~~~~i~~~~~~~~~~I~~~l~~~~g~-----~~s~~k~~ra 288 (716)
..+.+.+..+|.+++.+|...+.+. |+ .+|++++++.
T Consensus 82 ~~i~~~~~~~~~~s~~~i~~~l~~~-g~~~~~~~~s~~tv~r~ 123 (128)
T 1pdn_C 82 NRIEEYKRSSPGMFSWEIREKLIRE-GVCDRSTAPSVSAISRL 123 (128)
T ss_dssp HHHHHTTTTCTTCCHHHHHHHHHHT-SSSCSTTCCCHHHHHHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHc-CCccccCCcCHHHHHHH
Confidence 4455566778999999999999866 88 6999999875
No 26
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=26.05 E-value=46 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=17.2
Q ss_pred CCCCC-CCCCCcCCCCCCCCCCeeeCCcCCc
Q 037776 674 PMIES-VNTLSMKGSNESASSRARQCIENNS 703 (716)
Q Consensus 674 P~~~r-~GRpkk~Rr~e~~~k~~~~Cs~C~~ 703 (716)
|..++ .||-|+.| ..-..++|..|+.
T Consensus 2 ~kKRrN~GR~Kkgr----Ghv~~V~C~nCgr 28 (119)
T 2xzm_5 2 PVKRRNAGRSQKNR----GHTRTVPCTNCGR 28 (119)
T ss_dssp CCCCSSTTCCCCSS----SCCCEEECTTTCC
T ss_pred CcccccCCCCCCCC----CCCccEeeCCccc
Confidence 33455 77777775 1236789999986
No 27
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=24.14 E-value=88 Score=26.73 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=26.7
Q ss_pred CCCcCCCcEECCHHHHHHHHHHHHHHcCceEEEEee
Q 037776 160 KMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMEN 195 (716)
Q Consensus 160 ~~~l~vG~~F~s~ee~k~ai~~yAi~~gf~~~~~kS 195 (716)
|+--.+.+.|.|+|++ ..||.++|..|.|..-
T Consensus 57 D~~~qv~L~F~skE~A----iayAek~G~~y~V~ep 88 (108)
T 2lju_A 57 DTKQQVCLSFTTRELA----IAYAVAHKIDYTVLQD 88 (108)
T ss_dssp CCCCCSCEEESSHHHH----HHHHHHTTCEEEEECS
T ss_pred CccccceEecCCHHHH----HHHHHHcCCEEEEecC
Confidence 5566789999999998 5789999999998743
No 28
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=24.06 E-value=28 Score=23.41 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=8.1
Q ss_pred eCCcCCcCCCCCC
Q 037776 697 QCIENNSDAATNN 709 (716)
Q Consensus 697 ~Cs~C~~~GHn~~ 709 (716)
+|-+|++.||..+
T Consensus 2 ~C~~Cg~~GH~~~ 14 (37)
T 2bl6_A 2 TCYNCGKPGHLSS 14 (37)
T ss_dssp CBSSSCCSSCCTT
T ss_pred cccccCCCCcchh
Confidence 4666666666543
No 29
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=23.00 E-value=25 Score=37.63 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=17.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhCCCC
Q 037776 53 TDRPEQLLKTKCRRMRRKIARELFPSN 79 (716)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (716)
++++++++-..=.++=.-||.+|-+.+
T Consensus 330 ~~ee~e~~l~~DfeIG~~Ikd~IiP~A 356 (417)
T 2ayu_A 330 LEEDLEERLALDYSIGEQLKDKLIPRA 356 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred chHHHHHHHHHHHHHHHHHHhhccccH
Confidence 345666655555677777777765544
No 30
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.99 E-value=98 Score=27.30 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=30.0
Q ss_pred HHHhhhhhcCCCCCHHHHHHHHHHHh----CcccCHHHHHHH
Q 037776 251 AIYLHRWKLQPNLRTVDIKDEIKATY----GVVCHEAKLLCA 288 (716)
Q Consensus 251 ~~~~~~i~~~~~~~~~~I~~~l~~~~----g~~~s~~k~~ra 288 (716)
..+.+.+..++.+++.+|...+...+ |+.+|++++++.
T Consensus 97 ~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~ 138 (149)
T 1k78_A 97 EKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRI 138 (149)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHH
Confidence 34455566788999999999887776 888999998875
No 31
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=22.96 E-value=1.6e+02 Score=27.04 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=43.9
Q ss_pred cEEEEeC-ceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHH
Q 037776 347 RLLAVDG-WKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDY 423 (716)
Q Consensus 347 ~vi~iD~-T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~ 423 (716)
.++.+|- ++.... +|..++++.+|..-+. ++++.+ ...+.+.. ++.|..++ ..+.|.+|.||+.....+
T Consensus 14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~---~~~l~~~~--~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSAT---VKSLNVLT--SIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp SEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHH---HHHHHHHT--TTCCCSEEEECSCHHHHS
T ss_pred cEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHH---HHHHHHHH--HhCCCcEEEecCCcceeh
Confidence 4778886 444433 5566777778876554 456665 55555544 34444444 235688999999987644
No 32
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=22.51 E-value=1.8e+02 Score=31.78 Aligned_cols=65 Identities=8% Similarity=0.070 Sum_probs=43.5
Q ss_pred CceEEEEEEEeec--CCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHHHHhhccccccccchHHHHH
Q 037776 374 NGILPIAFCEVHV--EDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFT 443 (716)
Q Consensus 374 ~~~~pla~alv~~--E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~Ai~~vfP~a~h~~~C~~Hi~ 443 (716)
-+..+|++.-+.. .+.++..-.+..+.+..++....-..++||....+..|+... .| ..|.-|+.
T Consensus 129 ~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~----~~-i~C~~H~l 195 (534)
T 2bw3_A 129 LRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANN----IR-INCSSHLL 195 (534)
T ss_dssp EEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTS----EE-EECHHHHH
T ss_pred eEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcC----cc-cccHHHHH
Confidence 3445677777764 455655555555555554333336678999999888887643 57 89999999
No 33
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=22.22 E-value=25 Score=24.32 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=13.5
Q ss_pred CceeeecccccCCCCc
Q 037776 604 AQSCSCGLRQKSGIPC 619 (716)
Q Consensus 604 ~~tCsC~~~~~~GiPC 619 (716)
...|+|+.|...|.|=
T Consensus 21 ~~~C~CG~y~~~~kp~ 36 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKPT 36 (42)
T ss_dssp TSSBTTTTBCCCCCCC
T ss_pred CceeccccccCCCCcc
Confidence 4679999999999873
No 34
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=21.65 E-value=71 Score=19.98 Aligned_cols=16 Identities=38% Similarity=0.717 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 037776 60 LKTKCRRMRRKIAREL 75 (716)
Q Consensus 60 ~~~~~~~~~~~~~~~~ 75 (716)
+||..|.|+.|||.+|
T Consensus 2 lrkrlrkfrnkikekl 17 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKL 17 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555533
No 35
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=21.58 E-value=51 Score=34.24 Aligned_cols=10 Identities=0% Similarity=-0.041 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 037776 57 EQLLKTKCRR 66 (716)
Q Consensus 57 ~~~~~~~~~~ 66 (716)
++.+.+..+.
T Consensus 322 ~~~l~~~l~~ 331 (386)
T 2ca6_A 322 VDEIREVFST 331 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 4444444433
No 36
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=20.25 E-value=23 Score=26.10 Aligned_cols=12 Identities=8% Similarity=0.374 Sum_probs=6.3
Q ss_pred eeCCcCCcCCCC
Q 037776 696 RQCIENNSDAAT 707 (716)
Q Consensus 696 ~~Cs~C~~~GHn 707 (716)
..|-+|++.||.
T Consensus 13 ~~C~~Cg~~GH~ 24 (55)
T 1a1t_A 13 VKCFNCGKEGHI 24 (55)
T ss_dssp CBCTTTCCBSSC
T ss_pred cceeeeCCCCcC
Confidence 345555555554
No 37
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=20.03 E-value=62 Score=25.61 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=8.5
Q ss_pred eeeCCcCCcCCCCC
Q 037776 695 ARQCIENNSDAATN 708 (716)
Q Consensus 695 ~~~Cs~C~~~GHn~ 708 (716)
...|-+|++.||-.
T Consensus 46 ~~~C~~Cg~~GH~a 59 (74)
T 2li8_A 46 PKKCHFCQSISHMV 59 (74)
T ss_dssp CCCCTTTCCTTSCG
T ss_pred CCccCCcCCcCCcc
Confidence 45666666666653
No 38
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.03 E-value=1.5e+02 Score=26.47 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=31.1
Q ss_pred HHHhhhhhcCCCCCHHHHHHHHHHHh----CcccCHHHHHHHHHH
Q 037776 251 AIYLHRWKLQPNLRTVDIKDEIKATY----GVVCHEAKLLCAAKR 291 (716)
Q Consensus 251 ~~~~~~i~~~~~~~~~~I~~~l~~~~----g~~~s~~k~~rak~~ 291 (716)
..+.+.+..+|.+++.+|...+.+.. |+.+|++++++.-..
T Consensus 90 ~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 90 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 34455566788999999999887765 678999999876443
Done!