BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037778
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 66 GDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMV 125
D+ +N GYT L AA++G +E+ E++ N A D + P+ LAA+ GH ++V
Sbjct: 38 ADVNATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIV 96
Query: 126 VYL--YGQTKNSLNDEDRS--HLLVTLIQTDLYDVALRVFEDLHEKSAIGRAA 174
L +G N+ +++ + HL ++ +V L+ D++ + G+ A
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMT 96
K T LH+A VK L+ R N GYT L AA VE+AR ++
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQ 233
Query: 97 HNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNS 135
+ + A + + V P+ LAA GH +MV L + N
Sbjct: 234 YGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 116/282 (41%), Gaps = 49/282 (17%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGY-TALFFAAASGMVELAREIMTHN-K 99
T LH+A+ VK L+QR G +NV T L AA +G E+A+ ++ + K
Sbjct: 16 TPLHVASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALR 159
A +DD+ P+ AA +GH +MV L L + +L T T L+ A
Sbjct: 73 VNAKAKDDQT--PLHCAARIGHTNMVKLL-------LENNANPNLATTAGHTPLHIAA-- 121
Query: 160 VFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQ 219
R + ET L AL K + + TK+ F+ + K K +++ +
Sbjct: 122 ------------REGHVETVL-ALLEKEASQACMTKK----GFTPLHVAAKYGK-VRVAE 163
Query: 220 RLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIRE--YP-DLIWNIDENGYTI 276
L E+ + + + L + A NL+ + +L+ P W NGYT
Sbjct: 164 LLLERDAHPNAAGKNGLTP----LHVAVHHNNLDIVKLLLPRGGSPHSPAW----NGYTP 215
Query: 277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA 318
H A + + + + Q G + + E + LHLAA
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSAN----AESVQGVTPLHLAA 253
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T HIA + VK L R DL + N G T L A E++ + + N A
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS-QFLIENGAS 132
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDR 141
+D +P+ AAS+G ++ L G K+++N +D+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T HIA + VK L R DL + N G T L A E++ + + N A
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS-QFLIENGAS 132
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDR 141
+D +P+ AAS+G ++ L G K+++N +D+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T HIA + VK L R DL + N G T L A E++ + + N A
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS-QFLIENGAS 132
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDR 141
+D +P+ AAS+G ++ L G K+++N +D+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T LH+AA V+ L++ D+ + +G T L AA G +E+ E++ N A
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKN--GADVNAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGAD 105
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNS 135
+DD + P+ LAA+ GH ++V L YG N+
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 47 AAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD 106
AAAA Q V+ L+ D+ ++ G T L AAA+G +E+ E++ N A D
Sbjct: 13 AAAAGQDDEVRILMAN--GADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASD 69
Query: 107 DKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRS-----HLLVTLIQTDLYDVALRVF 161
+ P+ LAA GH ++V L + +N DR+ HL Q ++ +V L+
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 162 EDLHEKSAIGRAA 174
D++ + A+G A
Sbjct: 129 ADVNAQDALGLTA 141
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHN 98
R +T LHIA+ V+ L+Q D +++ G+T L A G +++ ++ H
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 99 KAIATE--QDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLN 137
+ T Q+D P+ AA GH D+V L YG ++N++N
Sbjct: 67 ALVNTTGYQNDS---PLHDAAKNGHVDIVKLLLSYGASRNAVN 106
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T LH+AA V+ L++ D+ ++++G T L AA G +E+ E++ N A
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKN--GADVNADDSLGVTPLHLAADRGHLEVV-EVLLKNGAD 105
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
D P+ LAA++GH ++V L
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVL 132
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 37 SKRKD--TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREI 94
+K KD T LH+AA V+ L++ D+ ++ GYT L AA G +E+ E+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIV-EV 119
Query: 95 MTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
+ A QD P DLA GHED+ L
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
AAR+G+LE + +L++ D + D++GYT H A I +++ + GA +
Sbjct: 42 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNA 96
Query: 306 EDPKKNNILHLAA 318
+D LHLAA
Sbjct: 97 KDKDGYTPLHLAA 109
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA 297
AAR+G+LE + +L++ D + D++GYT H A I +++ + GA
Sbjct: 75 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T LH+AA V+ L++ D+ +N G T L AA +G +E+ ++ H A
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKY--GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG-AD 105
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNS 135
+D + P+ LAA GH ++V L YG N+
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 72 NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--Y 129
++ G T L AAA G +E+ E++ N A D P+ LAASLGH ++V L Y
Sbjct: 32 DHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 130 GQTKNS 135
G N+
Sbjct: 91 GADVNA 96
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 41 DTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNK 99
D A+ +AA + G +E+++ +E G D+ N G TAL A V++ + + N
Sbjct: 40 DGAVFLAACSS--GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK-FLVENG 96
Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYLYGQ 131
A + D++ +P+ AAS G+ D+ YL Q
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 67 DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVV 126
D+ E+ G+T L AA +G +E+ E++ N A D + P+ LAA GH ++V
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 127 YLY--GQTKNSLNDEDRS--HLLVTLIQTDLYDVALRVFEDLHEKSAIGRAA 174
L G N+ + E + HL ++ +V L+ D++ + G+ A
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
>pdb|3VYW|A Chain A, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
pdb|3VYW|B Chain B, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
pdb|3VYW|C Chain C, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
pdb|3VYW|D Chain D, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
Length = 308
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 269 IDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQD 324
IDE GY + +++ L RK + L +++G+++++ K +K + L A +PP +
Sbjct: 216 IDEKGYWVSYSSSLSVRKSLLTLGFKVGSSREIGRK----RKGTVASLKAPVPPXE 267
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 37 SKRKD--TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREI 94
+K KD T LH+AA V+ L++ D+ ++ GYT L AA G +E+ E+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIV-EV 119
Query: 95 MTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
+ A QD P DLA G+ED+ L
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
AAR+G+LE + +L++ D + D++GYT H A I +++ + GA +
Sbjct: 42 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNA 96
Query: 306 EDPKKNNILHLAA 318
+D LHLAA
Sbjct: 97 KDKDGYTPLHLAA 109
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA 297
AAR+G+LE + +L++ D + D++GYT H A I +++ + GA
Sbjct: 75 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T LH+AA VK L+ + D +++ G T L AA +G E+ + +++
Sbjct: 39 TPLHLAAENGHKEVVKLLLS--QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYLYGQ 131
+ D + P+ LAA GH+++V L Q
Sbjct: 97 NAKDSDGKT-PLHLAAENGHKEVVKLLLSQ 125
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 56 VKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL 115
VK+L++ D+ ++ G T L AA +G E+ + +++ + D + P+ L
Sbjct: 20 VKDLLE--NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT-PLHL 76
Query: 116 AASLGHEDMVVYLYGQ 131
AA GH+++V L Q
Sbjct: 77 AAENGHKEVVKLLLSQ 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T LH+AA V+ L++ D+ + +G T L AA G +E+ E++ N A
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKH--GADVNAADKMGDTPLHLAALYGHLEIV-EVLLKNGAD 105
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNS 135
D P+ LAA GH ++V L YG N+
Sbjct: 106 VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
AAR+G+LE + +L++ D + D++GYT H A I +++ + GA +
Sbjct: 54 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNA 108
Query: 306 EDPKKNNILHLAA 318
+D LHLAA
Sbjct: 109 KDKDGYTPLHLAA 121
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA 297
AAR+G+LE + +L++ D + D++GYT H A I +++ + GA
Sbjct: 87 AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T LH+AA V+ L++ D+ + G+T L AA +G +E+ E++ A
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKH--GADVNARDTDGWTPLHLAADNGHLEIV-EVLLKYGAD 105
Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
QD + P+ LAA GH ++V L
Sbjct: 106 VNAQDAYGLTPLHLAADRGHLEIVEVL 132
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 79 LFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSL 136
L AA +G + R +M N A DD+ P+ LAA +GH ++V L +G N+
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 137 NDEDRS--HLLVTLIQTDLYDVALRVFEDLHEKSAIG 171
+ + + HL ++ +V L+ D++ + A G
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYG 113
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 50 AKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDK 108
A QYG + + +E G D+ Q + T L +AA + ++L + ++ + D
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 109 RVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS 142
P+ A GH MVV L YG + ++ E S
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 19 AVARGIYD-----VHEG-EIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQE- 71
A GIY+ V G ++R P K T LH AA + VK + + G + +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISK---GAIVDQL 71
Query: 72 -NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLY- 129
++ T L +A G + + ++M + A + D + I LAA GH +V YL
Sbjct: 72 GGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 130 -GQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALH 181
GQ + ++ + L+ +T D R+ + +G ++ TALH
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVD-PTRLLLTFNVSVNLGDKYHKNTALH 182
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 74 VGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK 133
G+T L AA G +E+ E++ N A +D V P+ LAA GH ++V L +
Sbjct: 46 TGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNG 103
Query: 134 NSLNDEDRS-----HLLVTLIQTDLYDVALRVFEDLHEKSAIGRAA 174
+N D HL ++ +V L+ D++ + G+ A
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 94 IMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS--HLLVTLI 149
I+ N A DD V P+ LAA GH ++V L +G N+ + R+ HL T+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVG 91
Query: 150 QTDLYDVALRVFEDLHEKSAIGRAA 174
++ +V L D++ + G+ A
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTA 116
>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
Length = 427
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 252 LEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKL-----IYQIGAAKDLILKFE 306
LE L + EY W + GY I V R+ +L I GA L+ +
Sbjct: 329 LEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLR-Q 387
Query: 307 DPKKNNILHLAAMLPPQDRLNI 328
DP+ N L LA LPP + L +
Sbjct: 388 DPENKN-LRLAPSLPPVEELEV 408
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIM 95
++K +++AL +A+ V L++R ++ N G T L +A V+ ++
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKCVEALL 122
Query: 96 THNKAIATEQDDKRVLPIDLAASLGH 121
+ TE D P+DLA +LG+
Sbjct: 123 ARGADLTTEADSGYT-PMDLAVALGY 147
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIM 95
++K +++AL +A+ V L++R ++ N G T L +A V+ ++
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKCVEALL 122
Query: 96 THNKAIATEQDDKRVLPIDLAASLGH 121
+ TE D P+DLA +LG+
Sbjct: 123 ARGADLTTEADSGYT-PMDLAVALGY 147
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
T L +AA G V++L+ D+ +N G TAL +AAA E ++ H+ A
Sbjct: 120 TPLILAARLAIEGMVEDLIT--ADADINAADNSGKTALHWAAAVNNTEAVNILLMHH-AN 176
Query: 102 ATEQDDKRVLPIDLAASLG 120
QDDK P+ LAA G
Sbjct: 177 RDAQDDKDETPLFLAAREG 195
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 75 GYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKN 134
G T L AA G E+ + ++++ + QDD P+ A H D+V L + +
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 135 -SLNDEDRS---HLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187
++ D + + H D+ ++ L DLH + G ++ LH AR+N
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG-----DSPLHIAAREN 188
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
AAR G+LE + +L+ D+ D+NG T H A + + KL+ + GA +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNA 63
Query: 306 EDPKKNNILHLAA 318
+D LHLAA
Sbjct: 64 KDKNGRTPLHLAA 76
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA 297
AAR G+LE + +L+ D+ D+NG T H A + + KL+ + GA
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
AAR G+LE + +L+ D+ D+NG T H A + + KL+ + GA +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNA 63
Query: 306 EDPKKNNILHLAA 318
+D LHLAA
Sbjct: 64 KDKNGRTPLHLAA 76
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
AAR G+LE + +L+ D+ D+NG T H A + + KL+ + GA +
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNA 96
Query: 306 EDPKKNNILHLAA 318
+D LHLAA
Sbjct: 97 KDKNGRTPLHLAA 109
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 94 IMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS--HLLVTLI 149
I+ N A DD V P+ LAA GH ++V L +G N+ + R+ HL T+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG 91
Query: 150 QTDLYDVALRVFEDLHEKSAIGRAA 174
++ +V L D++ + G+ A
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTA 116
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 94 IMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS--HLLVTLI 149
I+ N A DD V P+ LAA GH ++V L +G N+ + R+ HL T+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG 91
Query: 150 QTDLYDVALRVFEDLHEKSAIGRAA 174
++ +V L D++ + G+ A
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTA 116
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 75 GYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQ 131
G TAL +AA + + ++ + +QD+ PI LAA G ++V YL Q
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ 335
>pdb|3SZ8|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3TMQ|A Chain A, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|B Chain B, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|C Chain C, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|D Chain D, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3UND|A Chain A, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|B Chain B, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|C Chain C, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|D Chain D, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
Length = 285
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 24 IYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83
I DVHE E AP+++ D A A+Q V + + +P ++ + + T L
Sbjct: 95 ITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQL---- 150
Query: 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYG 130
H + E + RV+ + +S G++++VV + G
Sbjct: 151 ------------KHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLG 185
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 33 RAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL-AQENNVGYTALFFAAASGMVELA 91
RA S TAL A K ++ ++Q G++ A+ + G TAL A + G V++
Sbjct: 143 RAGYSPIMLTAL---ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVV 199
Query: 92 REIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYG--QTKNSLNDEDRSHLLVTLI 149
+ ++ +A QDD + A GH+++ L SL D D S L+ +
Sbjct: 200 KALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL 258
Query: 150 QTDLYDVALRVFEDLHEK 167
++A ++ ++ K
Sbjct: 259 DAGQSEIASMLYSRMNIK 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,495,165
Number of Sequences: 62578
Number of extensions: 478675
Number of successful extensions: 1369
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 97
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)