Query 037778
Match_columns 575
No_of_seqs 461 out of 3247
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-48 9E-53 408.7 33.8 350 2-373 11-388 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-48 4.2E-53 411.3 30.4 323 28-371 3-353 (437)
3 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-43 6.2E-48 360.0 24.9 301 3-375 22-326 (351)
4 4g8k_A 2-5A-dependent ribonucl 100.0 8.6E-43 2.9E-47 353.7 27.5 285 4-329 24-320 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 4.3E-42 1.5E-46 339.1 28.3 266 4-301 4-281 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-40 4.7E-45 328.2 24.3 264 38-360 3-284 (285)
7 3d9h_A CDNA FLJ77766, highly s 100.0 2.8E-40 9.5E-45 327.0 23.4 257 3-299 13-280 (285)
8 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-39 4.5E-44 317.9 22.5 248 4-325 2-253 (261)
9 2fo1_E LIN-12 protein; beta-ba 100.0 9.3E-40 3.2E-44 336.0 18.4 258 1-298 90-371 (373)
10 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-38 6.1E-43 323.1 25.7 266 2-317 55-320 (351)
11 1oy3_D Transcription factor in 100.0 5.6E-39 1.9E-43 316.6 20.6 249 37-323 6-271 (282)
12 2fo1_E LIN-12 protein; beta-ba 100.0 7.3E-40 2.5E-44 336.8 14.2 259 36-329 90-365 (373)
13 4g8k_A 2-5A-dependent ribonucl 100.0 2.9E-38 1E-42 320.4 25.0 272 37-372 22-311 (337)
14 3d9h_A CDNA FLJ77766, highly s 100.0 1.6E-38 5.3E-43 314.4 21.5 244 37-320 12-265 (285)
15 3ljn_A Hypothetical protein; a 100.0 2.9E-39 1E-43 331.3 16.0 252 37-326 17-305 (364)
16 2xai_A ASB-9, ankyrin repeat a 100.0 8.9E-38 3E-42 304.9 20.8 226 2-294 33-259 (261)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 7.8E-38 2.7E-42 303.9 19.8 228 32-296 3-246 (253)
18 3ljn_A Hypothetical protein; a 100.0 3.4E-38 1.1E-42 323.5 18.0 260 2-300 17-316 (364)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 3.7E-38 1.2E-42 306.2 16.7 227 67-329 2-242 (253)
20 1k1a_A B-cell lymphoma 3-encod 100.0 2.5E-37 8.5E-42 297.6 19.6 228 37-329 6-235 (241)
21 3aji_A 26S proteasome non-ATPa 100.0 5.8E-37 2E-41 293.2 22.0 226 4-298 5-230 (231)
22 1k1a_A B-cell lymphoma 3-encod 100.0 3.9E-37 1.3E-41 296.2 19.6 228 1-297 5-240 (241)
23 3b7b_A Euchromatic histone-lys 100.0 1.9E-36 6.6E-41 290.7 22.2 222 31-324 3-224 (237)
24 3b7b_A Euchromatic histone-lys 100.0 2.6E-36 9E-41 289.8 22.2 194 66-329 2-196 (237)
25 1s70_B 130 kDa myosin-binding 100.0 3.6E-37 1.2E-41 306.7 16.2 262 11-319 4-274 (299)
26 1oy3_D Transcription factor in 100.0 4.9E-37 1.7E-41 302.7 16.0 253 68-375 2-271 (282)
27 3eu9_A Huntingtin-interacting 100.0 1.6E-35 5.6E-40 284.2 22.3 231 37-300 6-237 (240)
28 3aji_A 26S proteasome non-ATPa 100.0 8.5E-36 2.9E-40 285.1 19.4 222 37-329 3-224 (231)
29 2dzn_A Probable 26S proteasome 100.0 2.2E-35 7.5E-40 281.5 21.7 76 241-321 142-219 (228)
30 2dzn_A Probable 26S proteasome 100.0 4.8E-35 1.6E-39 279.1 23.0 220 5-294 2-226 (228)
31 4b93_B Ankyrin repeat domain-c 100.0 3E-36 1E-40 294.9 14.9 214 37-322 8-230 (269)
32 4b93_B Ankyrin repeat domain-c 100.0 3.2E-36 1.1E-40 294.7 14.6 220 2-292 8-235 (269)
33 3kea_A K1L; tropism, ANK repea 100.0 3.7E-35 1.3E-39 290.1 20.4 238 13-300 7-248 (285)
34 2f8y_A Notch homolog 1, transl 100.0 1.5E-34 5E-39 274.9 19.8 217 16-300 2-218 (223)
35 1s70_B 130 kDa myosin-binding 100.0 5.8E-35 2E-39 290.7 17.1 245 4-294 39-285 (299)
36 1sw6_A Regulatory protein SWI6 100.0 1.3E-35 4.4E-40 299.3 9.2 253 15-321 29-327 (327)
37 3kea_A K1L; tropism, ANK repea 100.0 6.3E-34 2.2E-38 281.2 20.2 230 49-329 8-240 (285)
38 3eu9_A Huntingtin-interacting 100.0 4.1E-33 1.4E-37 267.5 24.2 226 2-264 6-235 (240)
39 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-34 7.7E-39 276.3 11.2 225 36-322 4-231 (236)
40 2f8y_A Notch homolog 1, transl 100.0 7.7E-33 2.6E-37 263.0 15.1 208 51-329 2-210 (223)
41 2rfa_A Transient receptor pote 100.0 8.1E-32 2.8E-36 257.6 22.1 197 4-232 2-227 (232)
42 2rfa_A Transient receptor pote 100.0 8.3E-32 2.8E-36 257.5 21.6 209 39-300 2-224 (232)
43 3hra_A Ankyrin repeat family p 100.0 2.7E-31 9.3E-36 248.0 21.6 199 3-296 3-201 (201)
44 1sw6_A Regulatory protein SWI6 100.0 2.1E-33 7.2E-38 283.1 6.3 261 38-371 21-325 (327)
45 3hra_A Ankyrin repeat family p 100.0 2.9E-31 9.8E-36 247.8 20.4 158 2-163 36-200 (201)
46 1ikn_D Protein (I-kappa-B-alph 100.0 1.4E-32 4.9E-37 263.7 9.3 214 2-283 5-229 (236)
47 2etb_A Transient receptor pote 100.0 1.8E-31 6E-36 259.4 15.8 199 5-300 2-248 (256)
48 2etb_A Transient receptor pote 100.0 4.5E-31 1.5E-35 256.5 15.4 167 2-232 40-251 (256)
49 2pnn_A Transient receptor pote 100.0 1.1E-30 3.9E-35 256.3 15.5 211 37-297 10-257 (273)
50 2pnn_A Transient receptor pote 100.0 2.4E-30 8.3E-35 253.9 16.2 198 2-230 10-262 (273)
51 4gpm_A Engineered protein OR26 100.0 8.6E-30 2.9E-34 230.4 18.2 157 7-170 6-163 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 5.1E-30 1.7E-34 249.6 16.2 199 2-231 2-254 (260)
53 3jxi_A Vanilloid receptor-rela 100.0 3.5E-30 1.2E-34 250.8 13.3 212 37-300 2-252 (260)
54 4gpm_A Engineered protein OR26 100.0 3.6E-29 1.2E-33 226.3 17.5 158 42-230 6-164 (169)
55 2aja_A Ankyrin repeat family p 100.0 3.7E-31 1.3E-35 269.8 4.5 261 6-328 66-367 (376)
56 3v30_A DNA-binding protein rfx 100.0 1.2E-28 4.2E-33 224.0 17.4 169 5-179 2-171 (172)
57 3v31_A Ankyrin repeat family A 100.0 1.6E-27 5.6E-32 215.5 17.8 155 4-163 2-157 (167)
58 4hbd_A KN motif and ankyrin re 100.0 3.8E-28 1.3E-32 238.6 13.4 190 40-296 76-273 (276)
59 3v30_A DNA-binding protein rfx 100.0 1.9E-27 6.4E-32 216.2 16.9 170 40-313 2-171 (172)
60 4hbd_A KN motif and ankyrin re 100.0 5.1E-28 1.7E-32 237.7 13.9 190 5-225 76-273 (276)
61 2vge_A RELA-associated inhibit 99.9 1.6E-29 5.4E-34 241.1 2.7 203 22-329 2-207 (229)
62 2rfm_A Putative ankyrin repeat 99.9 2.2E-27 7.5E-32 219.9 16.6 157 2-163 32-189 (192)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.6E-27 1.6E-31 213.0 17.8 157 2-163 11-168 (169)
64 2rfm_A Putative ankyrin repeat 99.9 3.8E-27 1.3E-31 218.3 16.7 163 31-225 27-190 (192)
65 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.1E-27 1.7E-31 209.6 16.2 154 4-163 1-155 (156)
66 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.7E-27 1.6E-31 211.2 15.6 154 4-163 4-159 (162)
67 3f6q_A Integrin-linked protein 99.9 3.7E-27 1.3E-31 215.8 14.5 168 3-176 3-171 (179)
68 3v31_A Ankyrin repeat family A 99.9 1.3E-26 4.5E-31 209.5 17.5 160 39-229 2-162 (167)
69 3twr_A Tankyrase-2; ankyrin re 99.9 3.3E-27 1.1E-31 212.9 13.5 157 2-163 5-162 (165)
70 2aja_A Ankyrin repeat family p 99.9 1.3E-28 4.4E-33 250.9 2.8 266 4-295 91-371 (376)
71 1awc_B Protein (GA binding pro 99.9 2.5E-26 8.5E-31 204.5 17.1 150 5-160 2-152 (153)
72 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.2E-26 4E-31 208.6 14.9 159 38-227 3-162 (162)
73 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.8E-26 1.3E-30 206.9 16.5 147 37-188 11-158 (169)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.8E-27 2.3E-31 224.6 8.2 180 1-188 1-193 (239)
75 3f6q_A Integrin-linked protein 99.9 6.4E-26 2.2E-30 207.5 14.3 166 37-232 2-168 (179)
76 2vge_A RELA-associated inhibit 99.9 8E-28 2.7E-32 229.2 1.2 177 2-188 18-200 (229)
77 3twr_A Tankyrase-2; ankyrin re 99.9 4.5E-26 1.5E-30 205.5 12.3 159 37-226 5-164 (165)
78 1awc_B Protein (GA binding pro 99.9 2.6E-25 9.1E-30 197.8 16.6 143 40-188 2-145 (153)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.1E-26 1.1E-30 219.9 10.3 183 38-322 3-193 (239)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.1E-25 2.4E-29 195.6 15.2 143 40-188 2-145 (156)
81 3t8k_A Uncharacterized protein 99.9 6.7E-25 2.3E-29 201.6 8.4 155 3-163 4-176 (186)
82 1d9s_A Cyclin-dependent kinase 99.9 3E-24 1E-28 186.9 12.2 124 3-132 10-134 (136)
83 2jab_A H10-2-G3; HER2, darpin, 99.9 7.1E-24 2.4E-28 184.5 14.1 126 2-132 11-136 (136)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 3.5E-24 1.2E-28 191.2 11.0 138 3-146 10-149 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 1.2E-23 4E-28 183.2 12.6 130 29-163 2-133 (136)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 6.9E-24 2.4E-28 189.3 10.0 142 37-184 9-152 (156)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.4E-23 2.5E-27 175.0 14.6 125 4-133 1-125 (126)
88 3t8k_A Uncharacterized protein 99.9 5.5E-23 1.9E-27 188.8 10.3 160 40-231 6-183 (186)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 2.1E-22 7.3E-27 175.1 12.5 124 37-163 11-135 (136)
90 3deo_A Signal recognition part 99.9 1.6E-22 5.4E-27 185.6 11.7 139 3-163 42-181 (183)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.7E-22 2.3E-26 169.0 14.5 122 39-163 1-123 (126)
92 3c5r_A BARD-1, BRCA1-associate 99.9 5.7E-23 2E-27 179.0 7.9 126 2-132 7-132 (137)
93 3ui2_A Signal recognition part 99.9 2.6E-22 9E-27 193.1 12.4 139 3-163 43-182 (244)
94 3aaa_C Myotrophin, protein V-1 99.9 5E-22 1.7E-26 169.5 9.8 110 4-118 6-115 (123)
95 3deo_A Signal recognition part 99.9 8E-23 2.7E-27 187.6 4.1 138 39-261 43-181 (183)
96 3c5r_A BARD-1, BRCA1-associate 99.9 2.9E-22 1E-26 174.4 7.1 125 36-163 6-131 (137)
97 2b0o_E UPLC1; arfgap, structur 99.9 1E-21 3.5E-26 194.8 11.4 141 37-188 148-298 (301)
98 3ui2_A Signal recognition part 99.9 9.5E-23 3.2E-27 196.2 3.4 112 38-187 43-155 (244)
99 3ehr_A Osteoclast-stimulating 99.9 8.3E-22 2.8E-26 186.7 8.9 126 4-133 72-197 (222)
100 3aaa_C Myotrophin, protein V-1 99.8 1.8E-21 6.2E-26 166.0 9.7 114 37-153 4-118 (123)
101 3ehr_A Osteoclast-stimulating 99.8 2.8E-21 9.4E-26 183.1 7.9 135 37-176 70-206 (222)
102 2b0o_E UPLC1; arfgap, structur 99.8 1.8E-20 6.1E-25 185.8 14.0 141 5-154 151-299 (301)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5E-20 1.7E-24 148.6 10.9 92 39-133 1-92 (93)
104 3jue_A Arfgap with coiled-coil 99.8 5.7E-20 1.9E-24 186.4 13.4 123 6-133 200-325 (368)
105 1dcq_A PYK2-associated protein 99.8 1E-19 3.5E-24 178.3 14.6 124 6-133 131-262 (278)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.4E-19 8.3E-24 144.6 11.0 93 4-100 1-93 (93)
107 3lvq_E ARF-GAP with SH3 domain 99.8 3.2E-19 1.1E-23 189.8 14.6 135 6-150 133-276 (497)
108 1dcq_A PYK2-associated protein 99.8 6E-19 2.1E-23 172.8 15.1 191 71-298 62-263 (278)
109 3jue_A Arfgap with coiled-coil 99.8 9.1E-19 3.1E-23 177.6 12.8 146 38-187 197-348 (368)
110 2l6b_A NR1C; ankyrin, consensu 99.8 4.7E-19 1.6E-23 149.0 8.5 105 37-144 6-111 (115)
111 2l6b_A NR1C; ankyrin, consensu 99.8 4.6E-19 1.6E-23 149.0 8.0 108 1-113 5-112 (115)
112 3lvq_E ARF-GAP with SH3 domain 99.8 4.5E-18 1.5E-22 180.8 14.9 136 40-186 132-277 (497)
113 2zgd_A 3 repeat synthetic anky 99.7 2.5E-17 8.5E-22 137.2 9.7 90 36-128 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2.4E-16 8.2E-21 131.2 10.3 89 2-94 21-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 66.5 16 0.00055 35.7 8.3 148 8-155 40-195 (351)
116 2l8s_A Integrin alpha-1; trans 60.7 10 0.00035 25.5 3.7 19 497-515 4-22 (54)
117 3k49_A MRNA-binding protein PU 54.3 77 0.0026 31.0 10.8 184 4-187 41-233 (369)
118 2knc_A Integrin alpha-IIB; tra 53.6 16 0.00055 24.7 3.7 17 499-515 9-25 (54)
119 2k1a_A Integrin alpha-IIB; sin 52.9 30 0.001 22.0 4.7 16 500-515 8-23 (42)
120 3gvo_A Pumilio 2, pumilio homo 46.1 54 0.0019 31.8 8.1 58 104-161 212-273 (351)
121 4g26_A Pentatricopeptide repea 37.0 76 0.0026 32.5 7.9 91 142-261 109-200 (501)
122 3k49_A MRNA-binding protein PU 27.6 3.4E+02 0.012 26.2 10.5 149 3-153 76-234 (369)
123 3bwt_A Protein PUF4; pumilio, 24.0 97 0.0033 29.6 5.7 158 4-163 23-191 (333)
124 4ev6_A Magnesium transport pro 23.6 90 0.0031 30.1 5.3 22 475-496 281-302 (339)
125 1gp8_A Protein (scaffolding pr 21.9 60 0.0021 19.9 2.2 17 8-24 16-32 (40)
126 3k62_A FEM-3 mRNA-binding fact 21.3 4.8E+02 0.016 25.7 10.2 181 4-187 122-334 (412)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-48 Score=408.75 Aligned_cols=350 Identities=16% Similarity=0.151 Sum_probs=290.0
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
...|.||||.|+..|+.++|+.|++. +.+++.. +..|.||||+|+..|+.++|++|++. +.+++.+|.+|.||||+
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHH
Confidence 45789999999999999999999984 8888887 88999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV 160 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L 160 (575)
|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+. ....+..|.||||.|+..|+.+++++|
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999996 8899999999999999999999999999988 677888999999999999999999999
Q ss_pred HHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhcc---------chhhhHhhHHH----HHHHHHHHHHhhh
Q 037778 161 FEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFS---------AKDIENKRQKA----LKLVQRLWEKVVL 227 (575)
Q Consensus 161 l~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~e~v~~L~~~~~~ 227 (575)
+++ +.+++..+.+|.||||+|+..++ ...++.+++ ....++.|.++ .++++.|++.|.+
T Consensus 166 l~~--g~~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 237 (437)
T 1n11_A 166 LER--DAHPNAAGKNGLTPLHVAVHHNN------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237 (437)
T ss_dssp HHT--TCCTTCCCSSCCCHHHHHHHTTC------HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HhC--CCCCCCCCCCCCCHHHHHHHcCC------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 997 88888999999999999999885 222222221 11233444433 6788888888887
Q ss_pred CChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhccc
Q 037778 228 LSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFED 307 (575)
Q Consensus 228 ~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d 307 (575)
++..+ ..+.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|+++|++++. +|
T Consensus 238 ~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----~~ 308 (437)
T 1n11_A 238 ANAES----VQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA----TT 308 (437)
T ss_dssp TTCCC----TTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC----CC
T ss_pred CCCCC----CCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC----CC
Confidence 77654 3345888888888888888888888888 678888888888888888888888888888887754 78
Q ss_pred CCCCcHHHHHhhCCCCCcccccc-------------chhHhhHHHHHHHHHHHHhh-cccccccccCCCCChhHHHHHhh
Q 037778 308 PKKNNILHLAAMLPPQDRLNIVS-------------GAALQMQRELLWFEEVEKAV-QRRSAEAKNEDGLSPRALFTRKH 373 (575)
Q Consensus 308 ~~G~T~LHlAa~~~~~~~~~~l~-------------~~~l~~~~~l~w~~~v~~~~-~~~~~~~~n~~G~Tpl~~a~~~~ 373 (575)
..|+||||+|+..|+.+++++|. .++++.+......+.|+.++ .|++++.+|.+|+||+++|.+..
T Consensus 309 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 88888888888888887776652 13566666666667777666 78889999999999999987643
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-48 Score=411.30 Aligned_cols=323 Identities=19% Similarity=0.159 Sum_probs=235.7
Q ss_pred CCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCC
Q 037778 28 HEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDD 107 (575)
Q Consensus 28 ~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 107 (575)
.+.+++.. +..|.||||+|+..|+.++|++|+++ +.+++.+|..|.||||+|++.|+.+++++|++.++++ +.++.
T Consensus 3 ~g~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~ 78 (437)
T 1n11_A 3 PGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAK 78 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCT
T ss_pred CCCCcccc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCC
Confidence 46677776 89999999999999999999999999 8999999999999999999999999999999999997 89999
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778 108 KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK 186 (575)
Q Consensus 108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~ 186 (575)
.|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +...+..+..|.||||+|+..
T Consensus 79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~ 156 (437)
T 1n11_A 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKY 156 (437)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHc
Confidence 99999999999999999999999999 788999999999999999999999999997 777888899999999999999
Q ss_pred CCCCcccchhhhhhhcc---------chhhhHhhHHH----HHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHH
Q 037778 187 NLNYSHFTKQYQRGFFS---------AKDIENKRQKA----LKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLE 253 (575)
Q Consensus 187 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~ 253 (575)
|+ ...++.+++ ....++.|.++ .+++++|++.+.+++..+ ..+.||||.|+..|+.+
T Consensus 157 g~------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~ 226 (437)
T 1n11_A 157 GK------VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA----WNGYTPLHIAAKQNQVE 226 (437)
T ss_dssp TC------HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC----TTCCCHHHHHHHTTCHH
T ss_pred CC------HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcC----CCCCCHHHHHHHcCCHH
Confidence 85 111111111 11122333322 456666666666555433 23347777777777777
Q ss_pred HHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCcccccc---
Q 037778 254 FLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVS--- 330 (575)
Q Consensus 254 iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~--- 330 (575)
+++.|++.+++ ++..|..|+||||+|+..|+.+++++|++++++.+. +|..|+||||+|+..++.+++++|.
T Consensus 227 ~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 301 (437)
T 1n11_A 227 VARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL----GNKSGLTPLHLVAQEGHVPVADVLIKHG 301 (437)
T ss_dssp HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 77777777766 566666777777777777777777777777666543 6677777777777776666554442
Q ss_pred ----------chhHhhHHHHHHHHHHHHhh-cccccccccCCCCChhHHHHH
Q 037778 331 ----------GAALQMQRELLWFEEVEKAV-QRRSAEAKNEDGLSPRALFTR 371 (575)
Q Consensus 331 ----------~~~l~~~~~l~w~~~v~~~~-~~~~~~~~n~~G~Tpl~~a~~ 371 (575)
.++++.+......+.|+.++ .+++++.+|..|+||+++|.+
T Consensus 302 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~ 353 (437)
T 1n11_A 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353 (437)
T ss_dssp CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence 12455555545555555555 566666666667777766654
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-43 Score=360.00 Aligned_cols=301 Identities=17% Similarity=0.176 Sum_probs=216.0
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA 82 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A 82 (575)
..+.++||.||..|+.+.++.++.+.+.+++.+ |..|.||||+|+..|+.++|++|+++ |.+++.+|..|.||||+|
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHH
Confidence 467899999999999999999999888888887 99999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++++ .+..+..|.++++.++..+..+......
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 9999999999999999997 8899999999999999999999999999998 7888899999988877666555555444
Q ss_pred HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778 162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE 241 (575)
Q Consensus 162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t 241 (575)
.. +++..++..++ .+.++.++......... ...+.|
T Consensus 178 ~~--------------~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~----~~~~~t 213 (351)
T 3utm_A 178 KG--------------HSLLQAAREAD--------------------------LAKVKKTLALEIINFKQ----PQSHET 213 (351)
T ss_dssp HH--------------HHHHHHHHTTC--------------------------HHHHHHHTTTCCTTCCC----TTTCCC
T ss_pred cc--------------cHHHHHHHhcc--------------------------HHHHHHHHHhhcccccC----CCCCCC
Confidence 33 23333333331 23333333222111111 122336
Q ss_pred HHHHHHHc---CCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778 242 LIFDAARQ---GNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA 318 (575)
Q Consensus 242 pLh~Aa~~---g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa 318 (575)
|||.|+.. ++.+++++|++.+++ ++.+|..|+||||+|+.+|+.+++++|+++|++++. +|..|+||||+|+
T Consensus 214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~----~d~~g~t~L~~A~ 288 (351)
T 3utm_A 214 ALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRAA 288 (351)
T ss_dssp HHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHH
Confidence 66666665 335566666666665 555566666666666666666666666666655533 5666666666666
Q ss_pred hCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHHhhHH
Q 037778 319 MLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHEN 375 (575)
Q Consensus 319 ~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~~~~~ 375 (575)
..++.+++++| +..|++++.+|.+|+||+++|.+...+
T Consensus 289 ~~~~~~~v~~L-------------------l~~gad~~~~~~~g~tal~~a~~~~~~ 326 (351)
T 3utm_A 289 LAGHLQTCRLL-------------------LSYGSDPSIISLQGFTAAQMGNEAVQQ 326 (351)
T ss_dssp HHTCHHHHHHH-------------------HHTTCCTTCCCTTSCCHHHHSCHHHHH
T ss_pred HcCcHHHHHHH-------------------HHcCCCCCCcCCCCCChhhhhhHHHHH
Confidence 66655444433 334555666666666666665444333
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=8.6e-43 Score=353.73 Aligned_cols=285 Identities=16% Similarity=0.153 Sum_probs=255.8
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
+|.|+||.|++.|+.++|+.||+. +++++.+.+..|.||||+|++.|+.++|++|+++ |++++.+|..+.+|++.++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHHHH
Confidence 578999999999999999999985 8999987455699999999999999999999999 9999999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-ccc----------CcCchhhHHHHHHHhC
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSL----------NDEDRSHLLVTLIQTD 152 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~----------~~~~g~t~L~~a~~~~ 152 (575)
..++.++++.+++.++++ +..|..|.||||+|+..|+.+++++|++.++ .+. .+..|.||||.|+..|
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred hcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 999999999999999997 8999999999999999999999999999987 332 3567899999999999
Q ss_pred cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778 153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR 232 (575)
Q Consensus 153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~ 232 (575)
+.++++.||++ .+.+++.+|..|.||+|.++..+. .....+++++|++.|++++..+
T Consensus 180 ~~~~v~~LL~~-~gad~n~~d~~g~t~l~~~~~~~~----------------------~~~~~~i~~lLl~~gad~n~~d 236 (337)
T 4g8k_A 180 HVEVLKILLDE-MGADVNACDNMGRNALIHALLSSD----------------------DSDVEAITHLLLDHGADVNVRG 236 (337)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHHSC----------------------TTTHHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHHhc-cCCCcCccCCCCCcHHHHHHHHcC----------------------cccHHHHHHHHHHCCCCCCCcC
Confidence 99999999987 799999999999999998886552 1113568899999999998766
Q ss_pred hhcccCCChHHHHHHHcCCHHHHHHHHHH-CCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCC
Q 037778 233 ISNLIAEPELIFDAARQGNLEFLLILIRE-YPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKN 311 (575)
Q Consensus 233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~-~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~ 311 (575)
..|.||||.|+..|+.++++.|++. +.+ ++.+|.+|+||||+|+++|+.+++++|+++|++++ +.
T Consensus 237 ----~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n---------~~ 302 (337)
T 4g8k_A 237 ----ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD---------CG 302 (337)
T ss_dssp ----GGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST---------TC
T ss_pred ----CCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------CC
Confidence 3445999999999999999999986 667 89999999999999999999999999999998764 34
Q ss_pred cHHHHHhhCCCCCccccc
Q 037778 312 NILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 312 T~LHlAa~~~~~~~~~~l 329 (575)
||||+|++.++.++++.|
T Consensus 303 ~~L~~A~~~~~~~iv~~L 320 (337)
T 4g8k_A 303 DLVMTARRNYDHSLVKVL 320 (337)
T ss_dssp CHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHH
Confidence 699999999998876665
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-42 Score=339.05 Aligned_cols=266 Identities=17% Similarity=0.167 Sum_probs=244.7
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
+|.||||.|+..|+.++++.+++. +.+++...+..|.||||+|+..|+.+++++|+++ |.+++.+|.+|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence 688999999999999999999985 6778876678899999999999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccC----------cCchhhHHHHHHHhC
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLN----------DEDRSHLLVTLIQTD 152 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~----------~~~g~t~L~~a~~~~ 152 (575)
..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.++ .+.. +..|.||||.|+..+
T Consensus 81 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 999999999999999996 8899999999999999999999999999988 4444 778999999999999
Q ss_pred cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778 153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR 232 (575)
Q Consensus 153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~ 232 (575)
+.++++.|++. .+.+++.+|..|.||||+|+..++ .....+++++|++.|++++..+
T Consensus 160 ~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----------------------~~~~~~i~~~Ll~~g~~~~~~~ 216 (285)
T 1wdy_A 160 HVEVLKILLDE-MGADVNACDNMGRNALIHALLSSD----------------------DSDVEAITHLLLDHGADVNVRG 216 (285)
T ss_dssp CHHHHHHHHHT-SCCCTTCCCTTSCCHHHHHHHCSC----------------------TTTHHHHHHHHHHTTCCSSCCC
T ss_pred CHHHHHHHHHh-cCCCCCccCCCCCCHHHHHHHccc----------------------cchHHHHHHHHHHcCCCCCCcC
Confidence 99999999998 799999999999999999999883 1112689999999999988765
Q ss_pred hhcccCCChHHHHHHHcCCHHHHHHHHH-HCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhh
Q 037778 233 ISNLIAEPELIFDAARQGNLEFLLILIR-EYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDL 301 (575)
Q Consensus 233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~-~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~ 301 (575)
..|.||||+|+..|+.+++++|++ .+.+ ++.+|.+|+||||+|+++|+.+++++|+++|++++.
T Consensus 217 ----~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 217 ----ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp ----TTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred ----CCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 345599999999999999999999 7888 899999999999999999999999999999999865
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-40 Score=328.24 Aligned_cols=264 Identities=14% Similarity=0.113 Sum_probs=240.7
Q ss_pred CCCChHHhHHHHcCCHHHHHHHHHcCCCCCcccc-ccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQE-NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
.+|+||||.|++.|+.+++++|++. +.+++.+ +..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 3578999999999999999999999 8898887 788999999999999999999999999996 88999999999999
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccc----------cCCCCcHHHHHHh
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGR----------AANEETALHALAR 185 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~----------d~~g~tpLh~a~~ 185 (575)
+..|+.+++++|++.++ .+..+..|.||||.|+..++.+++++|++. +..++.+ +..|.||||+|+.
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 99999999999999998 788899999999999999999999999997 7776666 7889999999999
Q ss_pred cCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH-hhhCChhhhhcccCCChHHHHHHHcCC----HHHHHHHHH
Q 037778 186 KNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK-VVLLSDSRISNLIAEPELIFDAARQGN----LEFLLILIR 260 (575)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~-~~~~~~~~~~~~~~~~tpLh~Aa~~g~----~~iv~~Ll~ 260 (575)
.++ .+++++|++. +.+++..+ ..+.||||.|+..|+ .++++.|++
T Consensus 158 ~~~--------------------------~~~v~~Ll~~~~~~~~~~~----~~g~t~l~~a~~~~~~~~~~~i~~~Ll~ 207 (285)
T 1wdy_A 158 KGH--------------------------VEVLKILLDEMGADVNACD----NMGRNALIHALLSSDDSDVEAITHLLLD 207 (285)
T ss_dssp HTC--------------------------HHHHHHHHHTSCCCTTCCC----TTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred cCC--------------------------HHHHHHHHHhcCCCCCccC----CCCCCHHHHHHHccccchHHHHHHHHHH
Confidence 984 8999999998 88887765 345599999999999 999999999
Q ss_pred HCCCccccccCCCCchHHHHHHcCChhHHHHHHh-cCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHH
Q 037778 261 EYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ-IGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRE 339 (575)
Q Consensus 261 ~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~ 339 (575)
++++ ++.+|..|+||||+|+.+|+.+++++|++ .|++++. +|.+|+||||+|+..++.+++++|
T Consensus 208 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~----~~~~g~t~l~~A~~~~~~~i~~~L---------- 272 (285)
T 1wdy_A 208 HGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND----TDSDGKTALLLAVELKLKKIAELL---------- 272 (285)
T ss_dssp TTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC----CCTTSCCHHHHHHHTTCHHHHHHH----------
T ss_pred cCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc----cCCCCCcHHHHHHHcCcHHHHHHH----------
Confidence 9999 89999999999999999999999999999 8888754 999999999999999998776665
Q ss_pred HHHHHHHHHhhcccccccccC
Q 037778 340 LLWFEEVEKAVQRRSAEAKNE 360 (575)
Q Consensus 340 l~w~~~v~~~~~~~~~~~~n~ 360 (575)
+..|++++.+|.
T Consensus 273 ---------l~~Ga~~~~~d~ 284 (285)
T 1wdy_A 273 ---------CKRGASTDCGDL 284 (285)
T ss_dssp ---------HHHSSCSCCSSC
T ss_pred ---------HHcCCCCCcccc
Confidence 447888877763
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=326.97 Aligned_cols=257 Identities=12% Similarity=0.057 Sum_probs=196.6
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCC----------CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHE----------GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN 72 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~----------~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d 72 (575)
.+|.|+||+|+..|+.+.+..++...+ ..++.+ |.+|+||||+|+..|+.+++++|++. +.+++.+|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~ 89 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIIT 89 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEEC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence 468999999999999988888655422 223444 88999999999999999999999999 89999999
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhC
Q 037778 73 NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTD 152 (575)
Q Consensus 73 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~ 152 (575)
.+|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.++....+.+|.||||.|+..+
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRG 168 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHT
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcC
Confidence 99999999999999999999999999997 89999999999999999999999999999882223455889999999999
Q ss_pred cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778 153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR 232 (575)
Q Consensus 153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~ 232 (575)
+.++++.|++. +.+++.+|.+|.||||+|+..++ .+++++|++.|++++. +
T Consensus 169 ~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~ga~~~~-~ 219 (285)
T 3d9h_A 169 HVECVNSLIAY--GGNIDHKISHLGTPLYLACENQQ--------------------------RACVKKLLESGADVNQ-G 219 (285)
T ss_dssp CHHHHHHHHHT--TCCTTCCBTTTBCHHHHHHHTTC--------------------------HHHHHHHHHTTCCTTC-C
T ss_pred CHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCc--------------------------HHHHHHHHHCCCCCCC-C
Confidence 99999999987 78888888899999999988884 7888888888887773 2
Q ss_pred hhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhc-Ccch
Q 037778 233 ISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI-GAAK 299 (575)
Q Consensus 233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-~~~~ 299 (575)
..+.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+ ++.+++++|+++ +++.
T Consensus 220 ----~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 220 ----KGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp ----BTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred ----CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 3445888888888888888888888888 7888888888888888 456888888887 5544
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=317.93 Aligned_cols=248 Identities=17% Similarity=0.127 Sum_probs=175.0
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
+|+||||.|+..|+.++++.+++. +.+++.+ |.+|.||||+|+..|+.+++++|+++ |.+++.+|.+|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNII-TADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH
Confidence 456666666666666666666553 5555555 55666666666666666666666665 5666666666666666666
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 163 (575)
..|+.+++++|+++++++ + .+..|.||||+|+..|+.+++++|++.
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------------------- 123 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAY-------------------------------- 123 (261)
T ss_dssp HHTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHT--------------------------------
T ss_pred HcCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHc--------------------------------
Confidence 666666666666666554 2 233456666666666666666655554
Q ss_pred hhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHH
Q 037778 164 LHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELI 243 (575)
Q Consensus 164 ~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpL 243 (575)
+.+++.+|.+|.||||+|+..++ .+++++|++.|++++. + ..|.|||
T Consensus 124 --g~~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~-~----~~g~t~L 170 (261)
T 2xai_A 124 --GGNIDHKISHLGTPLYLACENQQ--------------------------RACVKKLLESGADVNQ-G----KGQDSPL 170 (261)
T ss_dssp --TCCTTCCBTTTBCHHHHHHHTTC--------------------------HHHHHHHHHHTCCTTC-C----BTTBCHH
T ss_pred --CCCCCcCCCCCCCHHHHHHHhCC--------------------------HHHHHHHHHcCCCCCC-C----CCCCChH
Confidence 55566778888888888888873 7888888888888774 2 3455999
Q ss_pred HHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhh----hhhcccCCCCcHHHHHhh
Q 037778 244 FDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDL----ILKFEDPKKNNILHLAAM 319 (575)
Q Consensus 244 h~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~----l~~~~d~~G~T~LHlAa~ 319 (575)
|.|+..|+.++++.|+++|+| ++.+|.+|+||||+|+.+ .+++++|++++..... -.+.+|..|+||+|+|++
T Consensus 171 h~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~ 247 (261)
T 2xai_A 171 HAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITK 247 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGG
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcc
Confidence 999999999999999999999 899999999999999954 4699999998765421 124589999999999998
Q ss_pred CCCCCc
Q 037778 320 LPPQDR 325 (575)
Q Consensus 320 ~~~~~~ 325 (575)
...++.
T Consensus 248 ~~~p~~ 253 (261)
T 2xai_A 248 LVLPED 253 (261)
T ss_dssp SSSCHH
T ss_pred cCCcHH
Confidence 876653
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.3e-40 Score=335.98 Aligned_cols=258 Identities=18% Similarity=0.145 Sum_probs=215.8
Q ss_pred CCcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHH--------HcCCCCCccccc
Q 037778 1 PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELV--------QRMEPGDLAQEN 72 (575)
Q Consensus 1 p~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll--------~~~~~~~l~~~d 72 (575)
|+..|.||||.|+..|+ ++++.++. .+++...+..|+||||+|+..|+.+++++|+ +. |.+++.+|
T Consensus 90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~d 163 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAMD 163 (373)
T ss_dssp ----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCCC
T ss_pred CCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCCC
Confidence 35678999999999654 67765543 4667662378999999999999999888877 56 89999999
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc---c-cccCcCchhhHHHHH
Q 037778 73 NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT---K-NSLNDEDRSHLLVTL 148 (575)
Q Consensus 73 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~-~~~~~~~g~t~L~~a 148 (575)
.+|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+ . .+..+.+|.||||+|
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A 242 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence 99999999999999999999999999997 889999999999999999999999999987 3 677899999999999
Q ss_pred HHhC---cHHHHHHHHHhhhcccccc--------ccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHH
Q 037778 149 IQTD---LYDVALRVFEDLHEKSAIG--------RAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKL 217 (575)
Q Consensus 149 ~~~~---~~~~~~~Ll~~~~~~~~~~--------~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 217 (575)
+..+ +.++++.|++. +.+++. +|..|.||||+|+..++ .++
T Consensus 243 ~~~~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~--------------------------~~~ 294 (373)
T 2fo1_E 243 AHNEGRDQVASAKLLVEK--GAKVDYDGAARKDSEKYKGRTALHYAAQVSN--------------------------MPI 294 (373)
T ss_dssp HHSCSTTHHHHHHHHHHH--TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC--------------------------HHH
T ss_pred HHhCCcchHHHHHHHHHC--CCCcccccccccCcccccCCCHHHHHHHhCC--------------------------HHH
Confidence 9988 89999999997 666654 56688888888888884 788
Q ss_pred HHHHHHHh-hhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778 218 VQRLWEKV-VLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG 296 (575)
Q Consensus 218 v~~L~~~~-~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 296 (575)
+++|++.+ .+++..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++
T Consensus 295 v~~Ll~~~~~~~n~~d----~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 295 VKYLVGEKGSNKDKQD----EDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp HHHHHHHSCCCTTCCC----TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHhcCCCccCcC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 88888876 7777655 3445888888888888888888888888 7888888888888888888888888888887
Q ss_pred cc
Q 037778 297 AA 298 (575)
Q Consensus 297 ~~ 298 (575)
++
T Consensus 370 a~ 371 (373)
T 2fo1_E 370 PE 371 (373)
T ss_dssp --
T ss_pred cc
Confidence 65
No 10
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=323.07 Aligned_cols=266 Identities=17% Similarity=0.167 Sum_probs=240.1
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+..|.||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 55 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~ 130 (351)
T 3utm_A 55 DGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHE 130 (351)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 4678999999999999999999998 58899987 99999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
|+..|+.+++++|+++|++. +..+..|.||+++|+..+..+.+++.... .++..++..+..+.+..++
T Consensus 131 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l 198 (351)
T 3utm_A 131 AASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKG-----------HSLLQAAREADLAKVKKTL 198 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcc-----------cHHHHHHHhccHHHHHHHH
Confidence 99999999999999999996 88999999999999988888888776543 4567777888888888888
Q ss_pred HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778 162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE 241 (575)
Q Consensus 162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t 241 (575)
.. .......+..|.||||+|+..++ ....+++++|++.|++++..+ ..|.|
T Consensus 199 ~~--~~~~~~~~~~~~t~L~~A~~~~~-----------------------~~~~~~~~~Ll~~g~~~~~~~----~~g~t 249 (351)
T 3utm_A 199 AL--EIINFKQPQSHETALHCAVASLH-----------------------PKRKQVAELLLRKGANVNEKN----KDFMT 249 (351)
T ss_dssp TT--CCTTCCCTTTCCCHHHHHHHCCS-----------------------TTHHHHHHHHHHTTCCTTCCC----TTCCC
T ss_pred Hh--hcccccCCCCCCCHHHHHHHHhC-----------------------ccHHHHHHHHHHcCCCcCCcC----CCCCC
Confidence 87 44555678899999999999852 125789999999999998766 34559
Q ss_pred HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHH
Q 037778 242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLA 317 (575)
Q Consensus 242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlA 317 (575)
|||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++. +|.+|+||+|+|
T Consensus 250 ~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~~~~g~tal~~a 320 (351)
T 3utm_A 250 PLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI----ISLQGFTAAQMG 320 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC----cCCCCCChhhhh
Confidence 99999999999999999999999 899999999999999999999999999999999865 999999999998
No 11
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.6e-39 Score=316.64 Aligned_cols=249 Identities=16% Similarity=0.118 Sum_probs=181.8
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCC---ccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGD---LAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPI 113 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~---l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 113 (575)
|.+|+||||+|++.|+.++|++|++. +.+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL 82 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL 82 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 78888888888888888888888887 555 7788888888888888888888888888888886 77888888888
Q ss_pred HHHHHcCChHHHHHHHhccc-cc-------------cCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcH
Q 037778 114 DLAASLGHEDMVVYLYGQTK-NS-------------LNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETA 179 (575)
Q Consensus 114 ~~A~~~g~~~~v~~Ll~~~~-~~-------------~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tp 179 (575)
|+|+..|+.+++++|++.++ .. .....+.++++.+...+........+.. .+.+++.+|..|.||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED-WRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC-GGGGTTCCCTTSCCH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh-hhhcCCCcCCCCcCH
Confidence 88888888888888888765 11 1223445666666665555444445544 578888999999999
Q ss_pred HHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHH
Q 037778 180 LHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILI 259 (575)
Q Consensus 180 Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll 259 (575)
||+|+..++ .+++++|++.|++++..+ ...|.||||+|+..|+.+++++|+
T Consensus 162 L~~A~~~g~--------------------------~~~v~~Ll~~g~~~~~~~---~~~g~tpL~~A~~~~~~~~v~~Ll 212 (282)
T 1oy3_D 162 LHVAVIHKD--------------------------AEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELLL 212 (282)
T ss_dssp HHHHHHTTC--------------------------HHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCC--------------------------HHHHHHHHHcCCCCCCCC---CCCCcCHHHHHHHcCCHHHHHHHH
Confidence 999999994 899999999999988765 333669999999999999999999
Q ss_pred HHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCC
Q 037778 260 REYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQ 323 (575)
Q Consensus 260 ~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~ 323 (575)
++|++ ++.+|..|+||||+|+.+++.+++++|+++|++++. +|.+|.|||++|......
T Consensus 213 ~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 213 KAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE----DGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCC----CC----------------
T ss_pred HcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCc----CCCcccccccccCCcccc
Confidence 99999 899999999999999999999999999999999864 999999999999886653
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.3e-40 Score=336.77 Aligned_cols=259 Identities=17% Similarity=0.169 Sum_probs=224.9
Q ss_pred CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHHHHHcCCHHHHHHHH--------hcCccccccCC
Q 037778 36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFFAAASGMVELAREIM--------THNKAIATEQD 106 (575)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~~~~~~~~ 106 (575)
.+..|.||||+|+..|+ ++++.|+ ..+++.+| ..|+||||+|+..|+.++++.|+ +.|+++ +.+|
T Consensus 90 ~~~~g~t~L~~Aa~~~~-~~~~~L~----~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d 163 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGSY-AITEPIT----RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMD 163 (373)
T ss_dssp ----CCCHHHHHHHSSS-CCCSCCS----TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCC
T ss_pred CCCCCccHHHHHhcCCc-hHHHHhc----cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Confidence 37889999999999654 7777765 35788888 78999999999999998887776 788886 8999
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhc--cccccccCCCCcHHHHH
Q 037778 107 DKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHE--KSAIGRAANEETALHAL 183 (575)
Q Consensus 107 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~--~~~~~~d~~g~tpLh~a 183 (575)
..|.||||+|+..|+.++|++|++.++ .+..+.+|.||||+|+..++.++++.|++. .. .+++.+|.+|.||||+|
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~L~~A 242 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS-TKLKGDIEELDRNGMTALMIV 242 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS-HHHHHTTSCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc-CccccChhhcCCCCCCHHHHH
Confidence 999999999999999999999999999 788899999999999999999999999997 32 68889999999999999
Q ss_pred HhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhh----hcccCCChHHHHHHHcCCHHHHHHHH
Q 037778 184 ARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRI----SNLIAEPELIFDAARQGNLEFLLILI 259 (575)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~----~~~~~~~tpLh~Aa~~g~~~iv~~Ll 259 (575)
+..+. ....+++++|++.|++++.... ..+..|.||||.|+..|+.+++++|+
T Consensus 243 ~~~~~-----------------------~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll 299 (373)
T 2fo1_E 243 AHNEG-----------------------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299 (373)
T ss_dssp HHSCS-----------------------TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred HHhCC-----------------------cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH
Confidence 98762 1137899999999999875321 01234569999999999999999999
Q ss_pred HHC-CCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778 260 REY-PDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 260 ~~~-~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
+++ .+ ++.+|..|+||||+|+.+|+.+++++|+++|++++. +|..|+||||+|+..++.+++++|
T Consensus 300 ~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~----~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 300 GEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp HHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----CCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred HhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC----CCCCCCCHHHHHHHcCCHHHHHHH
Confidence 997 66 899999999999999999999999999999999865 999999999999999998877665
No 13
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.9e-38 Score=320.37 Aligned_cols=272 Identities=13% Similarity=0.096 Sum_probs=238.4
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccC-CChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNV-GYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL 115 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~-g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 115 (575)
+.+|+||||.|++.|+.++|++||++ |++++.++.+ |.||||+|+..|+.++|++|+++|+++ +.++..+.+|++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHH
Confidence 34578999999999999999999999 9999998764 999999999999999999999999996 8999999999999
Q ss_pred HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhcccccc----------ccCCCCcHHHHHH
Q 037778 116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIG----------RAANEETALHALA 184 (575)
Q Consensus 116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~----------~d~~g~tpLh~a~ 184 (575)
++..++.+++..+++.+. .+..+..|.||+|.|+..++.++++.+++. +.+++. .+..|.||||+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~--ga~~~~~~~~~~~~~~~~~~g~T~L~~A~ 176 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAA 176 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc--CCCcchhhccccccccccCCCCcHHHHHH
Confidence 999999999999999998 888999999999999999999999999987 655543 3567999999999
Q ss_pred hcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH-hhhCChhhhhcccCCChHHHHHHHcCC----HHHHHHHH
Q 037778 185 RKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK-VVLLSDSRISNLIAEPELIFDAARQGN----LEFLLILI 259 (575)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~-~~~~~~~~~~~~~~~~tpLh~Aa~~g~----~~iv~~Ll 259 (575)
+.|+ .+++++|+++ |++++..+ ..+.||+|.++..++ .++++.|+
T Consensus 177 ~~g~--------------------------~~~v~~LL~~~gad~n~~d----~~g~t~l~~~~~~~~~~~~~~i~~lLl 226 (337)
T 4g8k_A 177 EKGH--------------------------VEVLKILLDEMGADVNACD----NMGRNALIHALLSSDDSDVEAITHLLL 226 (337)
T ss_dssp HHTC--------------------------HHHHHHHHHHSCCCTTCCC----TTSCCHHHHHHHHSCTTTHHHHHHHHH
T ss_pred HCCC--------------------------HHHHHHHHhccCCCcCccC----CCCCcHHHHHHHHcCcccHHHHHHHHH
Confidence 9994 7999999965 88888765 344599988776544 46889999
Q ss_pred HHCCCccccccCCCCchHHHHHHcCChhHHHHHHhc-CcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHH
Q 037778 260 REYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI-GAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQR 338 (575)
Q Consensus 260 ~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~ 338 (575)
++|++ ++.+|.+|+||||+|+..|+.+++++|++. |++++ .+|.+|+||||+|++.|+.++++.|
T Consensus 227 ~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn----~~d~~G~TpL~~A~~~g~~~iv~~L--------- 292 (337)
T 4g8k_A 227 DHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL--------- 292 (337)
T ss_dssp HTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT----CBCTTSCBHHHHHHHTTCHHHHHHH---------
T ss_pred HCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc----CcCCCCCCHHHHHHHcCCHHHHHHH---------
Confidence 99999 899999999999999999999999999985 67764 5999999999999999998776665
Q ss_pred HHHHHHHHHHhhcccccccccCCCCChhHHHHHh
Q 037778 339 ELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRK 372 (575)
Q Consensus 339 ~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~~ 372 (575)
+..|++++ +++|+++|.+.
T Consensus 293 ----------l~~GAd~n-----~~~~L~~A~~~ 311 (337)
T 4g8k_A 293 ----------CKRGASTD-----CGDLVMTARRN 311 (337)
T ss_dssp ----------HTTSCSST-----TCCHHHHHHHT
T ss_pred ----------HHCCCCCC-----CCCHHHHHHHc
Confidence 44677665 45799999764
No 14
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=314.42 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=196.9
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcC---------CCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCC
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRM---------EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDD 107 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~---------~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 107 (575)
...|.|+||+|+..|+.+.+..++... -...++.+|..|+||||+|+..|+.++++.|++.++++ +.+|.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence 578999999999999987777765542 02236778999999999999999999999999999996 89999
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778 108 KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK 186 (575)
Q Consensus 108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~ 186 (575)
.|.||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|++. +..++. +.+|.||||+|+..
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHEAARR 167 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHc
Confidence 99999999999999999999999998 788999999999999999999999999997 666654 44599999999999
Q ss_pred CCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcc
Q 037778 187 NLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLI 266 (575)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~ 266 (575)
++ .+++++|++.|++++..+ ..+.||||+|+..|+.+++++|++.+++ +
T Consensus 168 g~--------------------------~~~v~~Ll~~g~~~~~~d----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~ 216 (285)
T 3d9h_A 168 GH--------------------------VECVNSLIAYGGNIDHKI----SHLGTPLYLACENQQRACVKKLLESGAD-V 216 (285)
T ss_dssp TC--------------------------HHHHHHHHHTTCCTTCCB----TTTBCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred CC--------------------------HHHHHHHHHCCCCCCCcC----CCCCCHHHHHHHcCcHHHHHHHHHCCCC-C
Confidence 94 899999999999988765 3455999999999999999999999999 5
Q ss_pred ccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhC
Q 037778 267 WNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAML 320 (575)
Q Consensus 267 ~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~ 320 (575)
+ .|..|+||||+|+..++.+++++|+++|++++. +|.+|+||||+|+..
T Consensus 217 ~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 217 N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA----KNAEGKRPVELVPPE 265 (285)
T ss_dssp T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTT
T ss_pred C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHhcCc
Confidence 5 489999999999999999999999999999865 999999999999943
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.9e-39 Score=331.34 Aligned_cols=252 Identities=16% Similarity=0.062 Sum_probs=223.1
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
|.+|.||||+|+..|+.++|++|++. |.+++.+|..|.||||+|+..|+.+++++|++.+++. .+.+|.||||+|
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A 91 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLA 91 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHH
Confidence 78899999999999999999999998 8999999999999999999999999999999999854 345799999999
Q ss_pred HHcCChHHHHHHHhc----cc-ccc-----------------CcCchhhHHHHHHHhC--cHHHHHHHHHhhhccccccc
Q 037778 117 ASLGHEDMVVYLYGQ----TK-NSL-----------------NDEDRSHLLVTLIQTD--LYDVALRVFEDLHEKSAIGR 172 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~----~~-~~~-----------------~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~ 172 (575)
+..|+.+++++|++. +. .+. .+.+|.||||+|+..| +.++++.|++. +.+++.+
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~ 169 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAK 169 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCC
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCccc
Confidence 999999999999998 44 333 6778999999999999 99999999998 8999999
Q ss_pred cCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhh-----CChhhhhcccCCChHHHHHH
Q 037778 173 AANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVL-----LSDSRISNLIAEPELIFDAA 247 (575)
Q Consensus 173 d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~-----~~~~~~~~~~~~~tpLh~Aa 247 (575)
|.+|.||||+|+..++ .+++++|++.|++ ++..+ ..+.||||+|+
T Consensus 170 d~~g~t~L~~A~~~g~--------------------------~~~v~~Ll~~g~~~~~~~~~~~~----~~g~t~L~~A~ 219 (364)
T 3ljn_A 170 DKADETPLMRAMEFRN--------------------------REALDLMMDTVPSKSSLRLDYAN----KQGNSHLHWAI 219 (364)
T ss_dssp CTTSCCHHHHHHHTTC--------------------------HHHHHHHHHHCSCSSSCCTTCCC----TTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCC--------------------------HHHHHHHHhcccccccccccccC----CCCCcHHHHHH
Confidence 9999999999999994 8999999999988 66554 34559999999
Q ss_pred HcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhh--------hcccCCCCcHHHHHhh
Q 037778 248 RQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLIL--------KFEDPKKNNILHLAAM 319 (575)
Q Consensus 248 ~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~--------~~~d~~G~T~LHlAa~ 319 (575)
..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++.+... ...+..|+|||+.|+.
T Consensus 220 ~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~ 298 (364)
T 3ljn_A 220 LINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA 298 (364)
T ss_dssp TTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC
T ss_pred HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhh
Confidence 99999999999999999 89999999999999999999999999999998764310 1157788999999998
Q ss_pred CCCCCcc
Q 037778 320 LPPQDRL 326 (575)
Q Consensus 320 ~~~~~~~ 326 (575)
.++.+.+
T Consensus 299 ~~~~~~v 305 (364)
T 3ljn_A 299 DPSKQEV 305 (364)
T ss_dssp CHHHHHH
T ss_pred ccCHHHH
Confidence 8865543
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.9e-38 Score=304.95 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=193.0
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+..|.||||.|+..|+.++++.|++ .+.+++.+ |.+|.||||+|+..|+.+++++|+++ +.+++. +.+|.||||+
T Consensus 33 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~ 107 (261)
T 2xai_A 33 TADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHE 107 (261)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCC-CCCCCCHHHH
Confidence 4689999999999999999999998 58899987 99999999999999999999999999 888875 5569999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV 160 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L 160 (575)
|+..|+.++++.|++.|+++ +..|..|.||||+|+..|+.+++++|++.++ .+ .+..|.||||+|+..++.++++.|
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~Lh~A~~~~~~~~v~~L 185 (261)
T 2xai_A 108 AARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLL 185 (261)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT-CCBTTBCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHcCCHHHHHHH
Confidence 99999999999999999997 8999999999999999999999999999998 44 488899999999999999999999
Q ss_pred HHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCC
Q 037778 161 FEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEP 240 (575)
Q Consensus 161 l~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~ 240 (575)
++. +.+++.+|.+|.||+|+|+..+ ++++.|++.+.......
T Consensus 186 l~~--gad~~~~d~~g~tpl~~A~~~~----------------------------~~~~~ll~~~~~~~l~~-------- 227 (261)
T 2xai_A 186 MDF--GADTQAKNAEGKRPVELVPPES----------------------------PLAQLFLEREGPPSLMQ-------- 227 (261)
T ss_dssp HHT--TCCTTCCCTTSCCGGGGSCTTC----------------------------THHHHHHHC-CCCCHHH--------
T ss_pred HHc--CCCCCCcCCCCCChhhhccccc----------------------------cHHHHHHhccCCccHHH--------
Confidence 997 8999999999999999998665 36666666543222111
Q ss_pred hHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778 241 ELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ 294 (575)
Q Consensus 241 tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~ 294 (575)
..+ ...+|..|+|++|.|.+....+.++-++.
T Consensus 228 ---------------------~~~-~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 228 ---------------------LCR-LRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp ---------------------HHH-HHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred ---------------------HHH-HHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 011 44678889999999888877776665543
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.8e-38 Score=303.88 Aligned_cols=228 Identities=17% Similarity=0.133 Sum_probs=123.2
Q ss_pred ccccCCCCCChHHhHHHHcC-------------CHHHHHHHHHcCCCCCcc-ccccCCChHHHHHHHcCCHHHHHHHHhc
Q 037778 32 IRAPISKRKDTALHIAAAAK-------------QYGFVKELVQRMEPGDLA-QENNVGYTALFFAAASGMVELAREIMTH 97 (575)
Q Consensus 32 ~~~~~~~~g~TpLh~Aa~~g-------------~~~~v~~Ll~~~~~~~l~-~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ 97 (575)
++.+ |.+|.||||+|+..| +.+++++|++. +.+++ ..|..|.||||+|+..|+.+++++|+++
T Consensus 3 vn~~-d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 3 VNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 79 (253)
T ss_dssp ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCC-CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 3444 556666666666655 56666666666 55543 3356666666666666666666666666
Q ss_pred CccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCC
Q 037778 98 NKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAAN 175 (575)
Q Consensus 98 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~ 175 (575)
|+++ +..|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||.|+..++.++++.|++. +.+++.+|.+
T Consensus 80 g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~ 156 (253)
T 1yyh_A 80 SADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVNAVDDL 156 (253)
T ss_dssp TCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT--TCCTTCBCTT
T ss_pred CCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc--CCCCCCcCCC
Confidence 6664 5666666666666666666666666666554 344445555555555555555555555554 5556666667
Q ss_pred CCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHH
Q 037778 176 EETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFL 255 (575)
Q Consensus 176 g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv 255 (575)
|.||||+|+..++ .+++++|++.|++++..+ ..|.||||+|+..|+.+++
T Consensus 157 g~t~L~~A~~~~~--------------------------~~~v~~Ll~~ga~~~~~~----~~g~tpL~~A~~~~~~~~v 206 (253)
T 1yyh_A 157 GKSALHWAAAVNN--------------------------VDAAVVLLKNGANKDMQN----NREETPLFLAAREGSYETA 206 (253)
T ss_dssp SCBHHHHHHHHTC--------------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC----CCCCCHHHHHHHCCCHHHH
Confidence 7777777776663 566666666666665544 2334777777777777777
Q ss_pred HHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778 256 LILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG 296 (575)
Q Consensus 256 ~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 296 (575)
++|+++|++ ++.+|..|+||+|+|+++|+.+++++|.+..
T Consensus 207 ~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 207 KVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 777777777 6677777777777777777777777776644
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.4e-38 Score=323.46 Aligned_cols=260 Identities=13% Similarity=0.030 Sum_probs=232.4
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+..|+||||+||..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.++|++|++. +.+++ +.+|.||||+
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~--~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASV--GEVHS--LWHGQKPIHL 90 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCCC--CBTTBCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCcc--ccCCCCHHHH
Confidence 4578999999999999999999998 48899987 99999999999999999999999999 66444 4589999999
Q ss_pred HHHcCCHHHHHHHHhc----Ccccccc-----------------CCCCCCcHHHHHHHcC--ChHHHHHHHhccc-cccC
Q 037778 82 AAASGMVELAREIMTH----NKAIATE-----------------QDDKRVLPIDLAASLG--HEDMVVYLYGQTK-NSLN 137 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~~ 137 (575)
|+..|+.+++++|++. +.+. +. .|..|.||||+|+..| +.+++++|++.++ .+..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~ 169 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence 9999999999999998 5554 44 7889999999999999 9999999999998 8889
Q ss_pred cCchhhHHHHHHHhCcHHHHHHHHHhhhccc-----cccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhH
Q 037778 138 DEDRSHLLVTLIQTDLYDVALRVFEDLHEKS-----AIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQ 212 (575)
Q Consensus 138 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~-----~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (575)
+..|.||||+|+..++.++++.|++. +.+ ++.+|..|.||||+|+..++
T Consensus 170 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~~~g~t~L~~A~~~g~------------------------ 223 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNREALDLMMDT--VPSKSSLRLDYANKQGNSHLHWAILINW------------------------ 223 (364)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHH--CSCSSSCCTTCCCTTCCCTTHHHHTTTC------------------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhc--ccccccccccccCCCCCcHHHHHHHcCC------------------------
Confidence 99999999999999999999999997 666 88999999999999999994
Q ss_pred HHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCc-----------cccccCCCCchHHHHH
Q 037778 213 KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDL-----------IWNIDENGYTIFHTAV 281 (575)
Q Consensus 213 ~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~-----------~~~~d~~G~t~Lh~A~ 281 (575)
.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++++++. ....+..|+++++.|+
T Consensus 224 --~~~v~~Ll~~gad~~~~d----~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa 297 (364)
T 3ljn_A 224 --EDVAMRFVEMGIDVNMED----NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297 (364)
T ss_dssp --HHHHHHHHTTTCCTTCCC----TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSS
T ss_pred --HHHHHHHHHcCCCCCCCC----CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhh
Confidence 899999999999998766 44569999999999999999999998762 1125778999999999
Q ss_pred HcCChhHHHHHHhcCcchh
Q 037778 282 LHRRKRIFKLIYQIGAAKD 300 (575)
Q Consensus 282 ~~~~~~iv~~Ll~~~~~~~ 300 (575)
..++.+.+..|++.+.+..
T Consensus 298 ~~~~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 298 ADPSKQEVLQLLQEKLDEV 316 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHH
Confidence 9998888888888776653
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.7e-38 Score=306.19 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=177.4
Q ss_pred CccccccCCChHHHHHHHcC-------------CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778 67 DLAQENNVGYTALFFAAASG-------------MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK 133 (575)
Q Consensus 67 ~l~~~d~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 133 (575)
|+|.+|.+|+||||+|+..| +.++++.|++.++++....|..|.||||+|+..|+.+++++|++.++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 57889999999999999977 89999999999999866779999999999999999999999999998
Q ss_pred -cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhH
Q 037778 134 -NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQ 212 (575)
Q Consensus 134 -~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (575)
.+..+..|.||||+|+..++.++++.|++. .+.+++.++.+|.||||+|+..++
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~------------------------ 136 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATDLDARMHDGTTPLILAARLAV------------------------ 136 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHS-TTSCTTCCCTTCCCHHHHHHHHTC------------------------
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCcHHHHHHHcCh------------------------
Confidence 888899999999999999999999999998 566889999999999999999984
Q ss_pred HHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHH
Q 037778 213 KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLI 292 (575)
Q Consensus 213 ~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~L 292 (575)
.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|
T Consensus 137 --~~~v~~Ll~~g~~~~~~d----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~L 209 (253)
T 1yyh_A 137 --EGMLEDLINSHADVNAVD----DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVL 209 (253)
T ss_dssp --SSHHHHHHHTTCCTTCBC----TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred --HHHHHHHHHcCCCCCCcC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 689999999999988766 3456999999999999999999999999 899999999999999999999999999
Q ss_pred HhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778 293 YQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 293 l~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
+++|++++. +|..|+||||+|++.|+.+++.++
T Consensus 210 l~~ga~~~~----~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 210 LDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCCccc----cccCCCCHHHHHHHcCCHHHHHHH
Confidence 999999865 999999999999999998877665
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.5e-37 Score=297.55 Aligned_cols=228 Identities=19% Similarity=0.171 Sum_probs=189.2
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcC--CCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRM--EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPID 114 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 114 (575)
|.+|+||||+|++.|+.+++++|++.. .+.+++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~ 84 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH 84 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence 888999999999999999999998721 17889999999999999999999999999999999886 888889999999
Q ss_pred HHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccc
Q 037778 115 LAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFT 194 (575)
Q Consensus 115 ~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~ 194 (575)
+|+..|+.+++++|++.++. ...+++.+|.+|.||||+|+..++
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~------------------------------~~~~~~~~~~~g~t~L~~A~~~~~------ 128 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAP------------------------------GTLDLEARNYDGLTALHVAVNTEC------ 128 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCT------------------------------TSCCTTCCCTTSCCHHHHHHHHTC------
T ss_pred HHHHcCCHHHHHHHHHcCCC------------------------------ccccccccCcCCCcHHHHHHHcCC------
Confidence 99999999999999887651 122445567777788888877773
Q ss_pred hhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCC
Q 037778 195 KQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGY 274 (575)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~ 274 (575)
.+++++|++.|++++..+ ...+.||||.|+..|+.+++++|+++|++ ++.+|..|+
T Consensus 129 --------------------~~~~~~Ll~~g~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 184 (241)
T 1k1a_A 129 --------------------QETVQLLLERGADIDAVD---IKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGS 184 (241)
T ss_dssp --------------------HHHHHHHHHTTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSC
T ss_pred --------------------HHHHHHHHHcCCCccccc---ccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCC
Confidence 677778887777766543 23455899999999999999999999999 788999999
Q ss_pred chHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778 275 TIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 275 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
||||+|+.+|+.+++++|+++|++++. +|..|+||||+|+..++.++++.+
T Consensus 185 t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 185 SALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred CHHHHHHHcCCHHHHHHHHhcCCCCCC----cCCCCCCHHHHHHhcCcHHHHhhh
Confidence 999999999999999999999998864 899999999999998887776665
No 21
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.8e-37 Score=293.19 Aligned_cols=226 Identities=18% Similarity=0.171 Sum_probs=180.7
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
.+.+|||.|+..|+.+.++.+++..+..++.. |.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHHH
Confidence 46788999999999999998888776666665 88889999999999999999999988 8888888888999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 163 (575)
..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.+.
T Consensus 82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------------------------ 130 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA------------------------------ 130 (231)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------------------------------
T ss_pred HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------------------------------
Confidence 999999999999988886 7888888999999998888888888888755
Q ss_pred hhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHH
Q 037778 164 LHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELI 243 (575)
Q Consensus 164 ~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpL 243 (575)
+++.+|..|.||||+|+..++ .+++++|++.|++++..+ ..|.|||
T Consensus 131 ----~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~----~~g~t~L 176 (231)
T 3aji_A 131 ----NPDAKDHYDATAMHRAAAKGN--------------------------LKMVHILLFYKASTNIQD----TEGNTPL 176 (231)
T ss_dssp ----CTTCCCTTSCCHHHHHHHHTC--------------------------HHHHHHHHHTTCCSCCCC----TTSCCHH
T ss_pred ----CCCCcCCCCCcHHHHHHHcCC--------------------------HHHHHHHHhcCCCccccC----CCCCCHH
Confidence 333455556666666665552 555666666655555443 2334777
Q ss_pred HHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcc
Q 037778 244 FDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA 298 (575)
Q Consensus 244 h~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~ 298 (575)
|+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++|++
T Consensus 177 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 177 HLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 777777888999999999988 788899999999999998999999999888764
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.9e-37 Score=296.16 Aligned_cols=228 Identities=16% Similarity=0.125 Sum_probs=187.4
Q ss_pred CCcccchHHHHHHHcCCHHHHHHHHh---hCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCCh
Q 037778 1 PIRRRRLKLYRAALTGDWAVARGIYD---VHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYT 77 (575)
Q Consensus 1 p~~~~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~T 77 (575)
++.+|+||||.|+..|+.++++.+++ +.+.+++.. |..|.||||+|+..|+.+++++|++. |.+++.+|..|.|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCC
Confidence 46789999999999999999999997 468888887 89999999999999999999999999 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCc----cccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCc
Q 037778 78 ALFFAAASGMVELAREIMTHNK----AIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDL 153 (575)
Q Consensus 78 pLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~ 153 (575)
|||+|+..|+.++++.|++.++ ++ +..|..|.||||+|+..|+.+++++|++.++
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-------------------- 140 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGA-------------------- 140 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCC--------------------
Confidence 9999999999999999999987 54 7888999999999999999999999998866
Q ss_pred HHHHHHHHHhhhcccccccc-CCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778 154 YDVALRVFEDLHEKSAIGRA-ANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR 232 (575)
Q Consensus 154 ~~~~~~Ll~~~~~~~~~~~d-~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~ 232 (575)
+++.++ ..|.||||+|+..++ .+++++|++.|++++..+
T Consensus 141 --------------~~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~ 180 (241)
T 1k1a_A 141 --------------DIDAVDIKSGRSPLIHAVENNS--------------------------LSMVQLLLQHGANVNAQM 180 (241)
T ss_dssp --------------CTTCCCTTTCCCHHHHHHHTTC--------------------------HHHHHHHHHTTCCTTCBC
T ss_pred --------------CcccccccCCCcHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC
Confidence 222333 456666666666552 556666666666655543
Q ss_pred hhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCc
Q 037778 233 ISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA 297 (575)
Q Consensus 233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~ 297 (575)
..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.++++.|.++++
T Consensus 181 ----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 181 ----YSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp ----TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred ----CCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 2334777777888889999999999999 78899999999999999999999999988764
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.9e-36 Score=290.74 Aligned_cols=222 Identities=19% Similarity=0.182 Sum_probs=170.9
Q ss_pred cccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCC
Q 037778 31 EIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRV 110 (575)
Q Consensus 31 ~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~ 110 (575)
+++.+ |.+|.||||+|+..|+.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|++.++++ +.++..|.
T Consensus 3 ~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 78 (237)
T 3b7b_A 3 NFKME-HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGS 78 (237)
T ss_dssp CCCCS-SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSC
T ss_pred Ccccc-cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCC
Confidence 34444 78888999999999999999999988 8888888888999999999999999999999988886 77888888
Q ss_pred cHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCC
Q 037778 111 LPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNY 190 (575)
Q Consensus 111 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~ 190 (575)
||||+|+..|+.+++++|++.++ .+++.++..|.||||+|+..++
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~-- 123 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQ---------------------------------MDVNCQDDGGWTPMIWATEYKH-- 123 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTC---------------------------------CCTTCCCTTSCCHHHHHHHTTC--
T ss_pred cHHHHHHHcCCHHHHHHHHhCCC---------------------------------CCcccCCCCCCCHHHHHHHcCC--
Confidence 99999998888888888888753 2333445555555555555552
Q ss_pred cccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcccccc
Q 037778 191 SHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNID 270 (575)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d 270 (575)
.+++++|++.|++++..+ ..+.||||.|+..|+.+++++|++++++ ++.+|
T Consensus 124 ------------------------~~~~~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~ 174 (237)
T 3b7b_A 124 ------------------------VDLVKLLLSKGSDINIRD----NEENICLHWAAFSGCVDIAEILLAAKCD-LHAVN 174 (237)
T ss_dssp ------------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCC
T ss_pred ------------------------HHHHHHHHHCCCCCCccC----CCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcC
Confidence 455555555555555433 2334777777777788888888888888 77788
Q ss_pred CCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCC
Q 037778 271 ENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQD 324 (575)
Q Consensus 271 ~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~ 324 (575)
..|+||||+|+++++.+++++|+++|++++. +|.+|+||||+|+..++.+
T Consensus 175 ~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTL----KNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTSCCHHHHSCTTCHHH
T ss_pred CCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----cCCCCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888754 7888888888888887654
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.6e-36 Score=289.79 Aligned_cols=194 Identities=19% Similarity=0.166 Sum_probs=171.5
Q ss_pred CCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHH
Q 037778 66 GDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLL 145 (575)
Q Consensus 66 ~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L 145 (575)
.+++.+|.+|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.++
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------ 68 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGA------------ 68 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC------------
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCC------------
Confidence 367888999999999999999999999999999986 8889999999999999999999999988644
Q ss_pred HHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh
Q 037778 146 VTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV 225 (575)
Q Consensus 146 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~ 225 (575)
.++.++..|.||||+|+..++ .+++++|++.+
T Consensus 69 ----------------------~~~~~~~~g~t~L~~A~~~~~--------------------------~~~~~~Ll~~~ 100 (237)
T 3b7b_A 69 ----------------------LVDPKDAEGSTCLHLAAKKGH--------------------------YEVVQYLLSNG 100 (237)
T ss_dssp ----------------------CCCCCCTTSCCHHHHHHHTTC--------------------------HHHHHHHHTTT
T ss_pred ----------------------CCCCCCCCCCcHHHHHHHcCC--------------------------HHHHHHHHhCC
Confidence 445677788899999998884 78899999888
Q ss_pred -hhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhh
Q 037778 226 -VLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILK 304 (575)
Q Consensus 226 -~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~ 304 (575)
.+++..+ ..+.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 101 ~~~~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--- 172 (237)
T 3b7b_A 101 QMDVNCQD----DGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA--- 172 (237)
T ss_dssp CCCTTCCC----TTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC---
T ss_pred CCCcccCC----CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC---
Confidence 5666544 3455999999999999999999999999 889999999999999999999999999999998864
Q ss_pred cccCCCCcHHHHHhhCCCCCccccc
Q 037778 305 FEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 305 ~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
+|..|+||||+|+..++.++++.|
T Consensus 173 -~~~~g~t~L~~A~~~~~~~~v~~L 196 (237)
T 3b7b_A 173 -VNIHGDSPLHIAARENRYDCVVLF 196 (237)
T ss_dssp -CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred -cCCCCCCHHHHHHHhCCHhHHHHH
Confidence 899999999999999998887765
No 25
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-37 Score=306.71 Aligned_cols=262 Identities=16% Similarity=0.165 Sum_probs=220.8
Q ss_pred HHHHcCCHHHHHHHHhhCCCcccc--------cCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778 11 RAALTGDWAVARGIYDVHEGEIRA--------PISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA 82 (575)
Q Consensus 11 ~Aa~~g~~~~v~~lL~~~~~~~~~--------~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A 82 (575)
.+|..|..+.++.++.... .+.. ..+.+|.||||.|+..|+.++|++|++. |.+++.+|.+|.||||+|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 80 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQA 80 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHH
T ss_pred hHHHHHHHHHHHHHHcccc-ccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHH
Confidence 5788888899998888532 2221 1234678999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.++
T Consensus 81 ~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 81 CIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159 (299)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence 9999999999999999997 8999999999999999999999999999998 7888999999999999999999999999
Q ss_pred HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778 162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE 241 (575)
Q Consensus 162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t 241 (575)
.. .+...+..+..+.+++ .+.+..++..+...+... ...+.|
T Consensus 160 ~~-~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~~~~~~~~~~---~~~g~t 201 (299)
T 1s70_B 160 NR-QGVDIEAARKEEERIM----------------------------------LRDARQWLNSGHINDVRH---AKSGGT 201 (299)
T ss_dssp HH-HTCCHHHHHHHHHHHH----------------------------------HHHHHHHHHHTCCCCCCC---TTTCCC
T ss_pred hh-cCCCchhhhhhhhhHH----------------------------------HHHHHHHHhccCcchhhh---cCCCCC
Confidence 87 5555443332222222 233444555554333222 234569
Q ss_pred HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhh
Q 037778 242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM 319 (575)
Q Consensus 242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~ 319 (575)
|||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++. +|..|+||||+|++
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 202 ALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTTTSCCS
T ss_pred HHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC----cCCCCCCHHHHHHH
Confidence 99999999999999999999999 899999999999999999999999999999999865 99999999999965
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.9e-37 Score=302.69 Aligned_cols=253 Identities=16% Similarity=0.098 Sum_probs=186.8
Q ss_pred ccccccCCChHHHHHHHcCCHHHHHHHHhcCccc--cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhH
Q 037778 68 LAQENNVGYTALFFAAASGMVELAREIMTHNKAI--ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHL 144 (575)
Q Consensus 68 l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 144 (575)
++.+|.+|+||||+|++.|+.+++++|++.+++. .+.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4678999999999999999999999999988872 48899999999999999999999999999999 88889999999
Q ss_pred HHHHHHhCcHHHHHHHHHhhhccccc-------------cccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhh
Q 037778 145 LVTLIQTDLYDVALRVFEDLHEKSAI-------------GRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKR 211 (575)
Q Consensus 145 L~~a~~~~~~~~~~~Ll~~~~~~~~~-------------~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (575)
||+|+..++.++++.|++. +.... .....+.++++.++..+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 136 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQP--RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP----------------------- 136 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSS--CCSSCCCC---------------------------------------------------
T ss_pred HHHHHHcCCcchhHhhhcc--CCCCchhhHHHHhhcccccCcchhcchhhhcccccc-----------------------
Confidence 9999999999999999987 32211 112334455555544331
Q ss_pred HHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccC-CCCchHHHHHHcCChhHHH
Q 037778 212 QKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDE-NGYTIFHTAVLHRRKRIFK 290 (575)
Q Consensus 212 ~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~-~G~t~Lh~A~~~~~~~iv~ 290 (575)
.......+...+.+++..+ ..+.||||.|+..|+.+++++|+++|++ ++..+. .|+||||+|+.+|+.++++
T Consensus 137 --~~~~~~~~~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~ 209 (282)
T 1oy3_D 137 --ENEEEPRDEDWRLQLEAEN----YDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLE 209 (282)
T ss_dssp ---------CCCGGGGTTCCC----TTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred --chhhhhhhhhhhhcCCCcC----CCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHH
Confidence 1223333344455555544 3455999999999999999999999999 677775 5999999999999999999
Q ss_pred HHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHH
Q 037778 291 LIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFT 370 (575)
Q Consensus 291 ~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~ 370 (575)
+|+++|++++. +|..|+||||+|+..++.+++++| +..|++++.+|.+|+||++++.
T Consensus 210 ~Ll~~gad~~~----~d~~g~tpL~~A~~~~~~~~v~~L-------------------l~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 210 LLLKAGADPTA----RMYGGRTPLGSALLRPNPILARLL-------------------RAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp HHHHTTCCTTC----CCTTSCCHHHHHHTSSCHHHHHHH-------------------HHTTCCCCCCC-----------
T ss_pred HHHHcCCCCcc----cccCCCCHHHHHHHcCCcHHHHHH-------------------HHcCCCcCcCCCcccccccccC
Confidence 99999999865 999999999999999998776665 5589999999999999999997
Q ss_pred HhhHH
Q 037778 371 RKHEN 375 (575)
Q Consensus 371 ~~~~~ 375 (575)
....+
T Consensus 267 ~~~~~ 271 (282)
T 1oy3_D 267 SDSDS 271 (282)
T ss_dssp -----
T ss_pred Ccccc
Confidence 65543
No 27
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=284.24 Aligned_cols=231 Identities=17% Similarity=0.130 Sum_probs=188.9
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
|..|.||||.|++.|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 66777888888888888888888887 7777777888888888888888888888888887776455555678888888
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK 195 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~ 195 (575)
+..|+.+++++|++.++ .+..+..|.||||.|+..++.++++.|++. +.+++.+|.+|.||||+|+..++
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~g~t~l~~a~~~~~------- 154 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK--GQDVDMMDQNGMTPLMWAAYRTH------- 154 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCC-------
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc--CCCccccCCCCCcHHHHHHHhCC-------
Confidence 88888888888888777 666777788888888888888888888876 77788889999999999997663
Q ss_pred hhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCc
Q 037778 196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYT 275 (575)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t 275 (575)
..++++.|++.+.+++..+ ...+.||||.|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus 155 ------------------~~~~~~~L~~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 212 (240)
T 3eu9_A 155 ------------------SVDPTRLLLTFNVSVNLGD---KYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGES 212 (240)
T ss_dssp ------------------SSTTHHHHHHTTCCTTCCC---TTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCB
T ss_pred ------------------hHHHHHHHHhcCCCcchhh---ccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence 2568888999998888765 33556999999999999999999999999 8899999999
Q ss_pred hHHHHHHcCChhHHHHHHhcCcchh
Q 037778 276 IFHTAVLHRRKRIFKLIYQIGAAKD 300 (575)
Q Consensus 276 ~Lh~A~~~~~~~iv~~Ll~~~~~~~ 300 (575)
|||+|+++|+.+++++|++.+....
T Consensus 213 ~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 213 ALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHcCcHHHHHHHHHhhhccC
Confidence 9999999999999999999987654
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.5e-36 Score=285.07 Aligned_cols=222 Identities=21% Similarity=0.173 Sum_probs=193.0
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
+..++||||.|++.|+.+.++.|++.. +..++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence 345788999999999999999999874 4557888888999999999999999999999998886 78888899999999
Q ss_pred HHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh
Q 037778 117 ASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ 196 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~ 196 (575)
+..|+.+++++|++.++ +++.+|.+|.||||+|+..++
T Consensus 81 ~~~~~~~~v~~Ll~~g~----------------------------------~~~~~~~~g~t~L~~A~~~~~-------- 118 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGA----------------------------------HVNAVNQNGCTPLHYAASKNR-------- 118 (231)
T ss_dssp HHHTCHHHHHHHHHTTC----------------------------------CTTCCCTTSCCHHHHHHHTTC--------
T ss_pred HHcCHHHHHHHHHHcCC----------------------------------CCCCCCCCCCCHHHHHHHcCC--------
Confidence 99988888888887644 445678889999999999884
Q ss_pred hhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch
Q 037778 197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI 276 (575)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~ 276 (575)
.+++++|++.|.+++..+ ..+.||||.|+..|+.++++.|++++++ ++.+|..|+||
T Consensus 119 ------------------~~~~~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 175 (231)
T 3aji_A 119 ------------------HEIAVMLLEGGANPDAKD----HYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTP 175 (231)
T ss_dssp ------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCH
T ss_pred ------------------HHHHHHHHHcCCCCCCcC----CCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCH
Confidence 789999999999888765 3455999999999999999999999999 88999999999
Q ss_pred HHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778 277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 277 Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
||+|+.+++.+++++|+++|++++. +|..|+||||+|+..++.+++++|
T Consensus 176 L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 176 LHLACDEERVEEAKFLVTQGASIYI----ENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999865 999999999999988876655544
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.2e-35 Score=281.53 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=62.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHC-CCccccccCCCCchHHHHHHcCChhHHHHHH-hcCcchhhhhhcccCCCCcHHHHHh
Q 037778 241 ELIFDAARQGNLEFLLILIREY-PDLIWNIDENGYTIFHTAVLHRRKRIFKLIY-QIGAAKDLILKFEDPKKNNILHLAA 318 (575)
Q Consensus 241 tpLh~Aa~~g~~~iv~~Ll~~~-~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~l~~~~d~~G~T~LHlAa 318 (575)
||||.|+..|+.++++.|++.+ .+ ++.+|..|+||||+|+.+++.+++++|+ +.|++++. +|.+|+||||+|+
T Consensus 142 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~----~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 142 IPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVAL 216 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----BCTTSCBGGGGCS
T ss_pred CHHHHHHHcCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc----cCCCCCcHHHHHH
Confidence 6666666667788888888888 55 7888899999999999999999999999 88888764 8899999999987
Q ss_pred hCC
Q 037778 319 MLP 321 (575)
Q Consensus 319 ~~~ 321 (575)
+.+
T Consensus 217 ~~~ 219 (228)
T 2dzn_A 217 NEQ 219 (228)
T ss_dssp STT
T ss_pred HHH
Confidence 653
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.8e-35 Score=279.14 Aligned_cols=220 Identities=15% Similarity=0.189 Sum_probs=160.1
Q ss_pred cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccc-cccCCChHHHHHH
Q 037778 5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQ-ENNVGYTALFFAA 83 (575)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~d~~g~TpLh~Aa 83 (575)
|+||||.|+..|+.+.++.+++..+...+.. |.+|.||||+|+..|+.+++++|++.....+++. +|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 6788888888888888888888654444434 7888888888888888888888888821255555 7788888888888
Q ss_pred HcCCHHHHHHHHhcC--ccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 84 ASGMVELAREIMTHN--KAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
..|+.+++++|++++ +++ +..+..|.||||+|+..|+.+++++|++.+.
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------- 131 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGA---------------------------- 131 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----------------------------
Confidence 888888888888887 665 7778888888888888888888888887765
Q ss_pred HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh-hhCChhhhhcccCCC
Q 037778 162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV-VLLSDSRISNLIAEP 240 (575)
Q Consensus 162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~-~~~~~~~~~~~~~~~ 240 (575)
+++.+|.+|.||||+|+..++ .+++++|++.| .+++..+ ..|.
T Consensus 132 ------~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~d----~~g~ 175 (228)
T 2dzn_A 132 ------SVRIKDKFNQIPLHRAASVGS--------------------------LKLIELLCGLGKSAVNWQD----KQGW 175 (228)
T ss_dssp ------CSCCCCTTSCCHHHHHHHTTC--------------------------HHHHHHHHTTTCCCSCCCC----TTSC
T ss_pred ------CccccCCCCCCHHHHHHHcCC--------------------------HHHHHHHHhcCcccccCcC----CCCC
Confidence 333444445555555554442 44555555554 4444333 2333
Q ss_pred hHHHHHHHcCCHHHHHHHH-HHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778 241 ELIFDAARQGNLEFLLILI-REYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ 294 (575)
Q Consensus 241 tpLh~Aa~~g~~~iv~~Ll-~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~ 294 (575)
||||+|+..|+.+++++|+ +.|++ ++.+|.+|+||||+|+.. ++.++|++
T Consensus 176 t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 176 TPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 7777777777899999999 88999 889999999999999654 56666665
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=294.93 Aligned_cols=214 Identities=16% Similarity=0.218 Sum_probs=117.3
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCC--------ccccccCCChHHHHHHHcCCH-HHHHHHHhcCccccccCCC
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGD--------LAQENNVGYTALFFAAASGMV-ELAREIMTHNKAIATEQDD 107 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--------l~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~ 107 (575)
|..+.+||+.|++.|+.++|++|++. +.+ ++..|..|.||||.|+..++. ++++.|++.|+++ +.+|.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~--~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~ 84 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEW--TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ 84 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTC--C----------------------------------------CCCCT-TCCCT
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHC--CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence 44455666666666666666666655 221 344555566666666655543 3556666666664 56666
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcC
Q 037778 108 KRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187 (575)
Q Consensus 108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~ 187 (575)
+|.||||+|+..|+.+++++|++.++ +++.++.+|.||+|.|+..+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a----------------------------------~~~~~~~~g~t~l~~a~~~~ 130 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGA----------------------------------NAGARNADQAVPLHLACQQG 130 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTC----------------------------------CTTCCCTTCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCC----------------------------------CcCccCCCCCCccccccccC
Confidence 66666666666666666666665544 12223333333333333333
Q ss_pred CCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccc
Q 037778 188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIW 267 (575)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~ 267 (575)
+ .++++.|++.|++++..+ ..|.||||+|+..|+.++++.|+++|++ ++
T Consensus 131 ~--------------------------~~~~~~Ll~~g~~~n~~d----~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn 179 (269)
T 4b93_B 131 H--------------------------FQVVKCLLDSNAKPNKKD----LSGNTPLIYACSGGHHELVALLLQHGAS-IN 179 (269)
T ss_dssp C--------------------------HHHHHHHHHTTCCSCCCC----TTCCCHHHHHHHTTCGGGHHHHHHTTCC-TT
T ss_pred h--------------------------HHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CC
Confidence 1 333333333333333322 1223566666666678888888888888 78
Q ss_pred cccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCC
Q 037778 268 NIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPP 322 (575)
Q Consensus 268 ~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~ 322 (575)
.+|..|+||||+|+.+|+.+++++|+++|++++. +|.+|+||||+|+++++
T Consensus 180 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----LNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCSGGGSCTTCH
T ss_pred ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHhCCc
Confidence 8899999999999999999999999999988754 89999999999987664
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=294.65 Aligned_cols=220 Identities=17% Similarity=0.183 Sum_probs=158.3
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCc-------ccccCCCCCChHHhHHHHcCCHH-HHHHHHHcCCCCCcccccc
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGE-------IRAPISKRKDTALHIAAAAKQYG-FVKELVQRMEPGDLAQENN 73 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~-------~~~~~~~~g~TpLh~Aa~~g~~~-~v~~Ll~~~~~~~l~~~d~ 73 (575)
+.++.++|+.||..|+.++|+.||+..... ++.. +..|.||||.|+..++.+ +++.|++. |+++|.+|.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~ 84 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQ 84 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C--CCCTTCCCT
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCC
Confidence 456789999999999999999999853322 3344 778999999999988764 88999998 999999999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCc
Q 037778 74 VGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDL 153 (575)
Q Consensus 74 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~ 153 (575)
+|+||||+|+..|+.+++++|++.++++ +..+..|.||+|.|+..++.+++++|++.++
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-------------------- 143 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA-------------------- 143 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--------------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC--------------------
Confidence 9999999999999999999999999996 8899999999999999999999999998755
Q ss_pred HHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhh
Q 037778 154 YDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRI 233 (575)
Q Consensus 154 ~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~ 233 (575)
+++.+|.+|.||||+|+..|+ .+++++|++.|++++..+
T Consensus 144 --------------~~n~~d~~g~TpL~~A~~~g~--------------------------~~~v~~Ll~~gadvn~~~- 182 (269)
T 4b93_B 144 --------------KPNKKDLSGNTPLIYACSGGH--------------------------HELVALLLQHGASINASN- 182 (269)
T ss_dssp --------------CSCCCCTTCCCHHHHHHHTTC--------------------------GGGHHHHHHTTCCTTCBC-
T ss_pred --------------CCCCCCCCCCCHHHHHHHCCC--------------------------HHHHHHHHHCCCCCCccc-
Confidence 344566666777777776663 566667777776666554
Q ss_pred hcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHH
Q 037778 234 SNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLI 292 (575)
Q Consensus 234 ~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~L 292 (575)
..|.||||+|+..|+.++++.|+++|+| ++.+|.+|+||||+|+++++ ++++|
T Consensus 183 ---~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 183 ---NKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp ---TTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred ---cCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence 3344888888888899999999999999 89999999999999988764 44444
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.7e-35 Score=290.08 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=212.0
Q ss_pred HHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHH
Q 037778 13 ALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAR 92 (575)
Q Consensus 13 a~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~ 92 (575)
+..++.+.++.+|.+. +++.+ |.+|.||||+|+..|+.++|++|++. |.+++.+| |.||||+|+..|+.++++
T Consensus 7 i~~~~~~~v~~lL~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~--g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGGCCHHHHHHHHHST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCCT--TCCHHHHHTTSSSCHHHH
T ss_pred HHhcCHHHHHHHHHhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCC--CCCHHHHHHHcCCHHHHH
Confidence 4567788888888864 57776 99999999999999999999999999 89988874 999999999999999999
Q ss_pred HHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCch-hhHHHHHHHhCcHHHHHHHHHhhhccccc
Q 037778 93 EIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDR-SHLLVTLIQTDLYDVALRVFEDLHEKSAI 170 (575)
Q Consensus 93 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 170 (575)
+|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..| .||||.|+..++.+++++|+++ +...
T Consensus 80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~--g~~~- 155 (285)
T 3kea_A 80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPST- 155 (285)
T ss_dssp HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT--SCTT-
T ss_pred HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCcc-
Confidence 999999996 8899999999999999999999999999998 78888888 8999999999999999999998 4433
Q ss_pred cccC-CCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChH-HHHHHH
Q 037778 171 GRAA-NEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPEL-IFDAAR 248 (575)
Q Consensus 171 ~~d~-~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tp-Lh~Aa~ 248 (575)
.+. .|.||||+|+..++ .+++++|++.|++++..+ ..|.|| ||+|+.
T Consensus 156 -~~~~~g~t~L~~A~~~g~--------------------------~~~v~~Ll~~gad~n~~~----~~g~t~~L~~A~~ 204 (285)
T 3kea_A 156 -FDLAILLSCIHITIKNGH--------------------------VDMMILLLDYMTSTNTNN----SLLFIPDIKLAID 204 (285)
T ss_dssp -CCCSTHHHHHHHHHHTTC--------------------------HHHHHHHHHHHHHTCTTC----CCBCCTTHHHHHH
T ss_pred -ccccCCccHHHHHHHcCh--------------------------HHHHHHHHHcCCCCCccc----CCCCChHHHHHHH
Confidence 333 89999999999994 899999999999998876 344476 999999
Q ss_pred cCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778 249 QGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD 300 (575)
Q Consensus 249 ~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 300 (575)
.|+.+++++|+++|++ ++..| +.|+..|+.+++++|+++|++.+
T Consensus 205 ~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 205 NKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp HTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999 67766 46678999999999999998774
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.5e-34 Score=274.88 Aligned_cols=217 Identities=19% Similarity=0.162 Sum_probs=174.9
Q ss_pred CCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHH
Q 037778 16 GDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIM 95 (575)
Q Consensus 16 g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll 95 (575)
|+.++++.+++. +.+++...|.+|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 567778877774 6677766588899999999999999999999998 8899999999999999999999999999999
Q ss_pred hcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCC
Q 037778 96 THNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAAN 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~ 175 (575)
+.++...+..+..|.||||+|+..|+.+++++|++.++ +++.+|.+
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------------~~~~~~~~ 124 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA----------------------------------DVNAVDDL 124 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----------------------------------CTTCBCTT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC----------------------------------CCcCcCCC
Confidence 99884458888999999999999999999999888755 33445556
Q ss_pred CCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHH
Q 037778 176 EETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFL 255 (575)
Q Consensus 176 g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv 255 (575)
|.||||+|+..++ .+++++|++.|++++..+ ..+.||||+|++.|+.+++
T Consensus 125 g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v 174 (223)
T 2f8y_A 125 GKSALHWAAAVNN--------------------------VDAAVVLLKNGANKDMQN----NREETPLFLAAREGSYETA 174 (223)
T ss_dssp SCBHHHHHHHTTC--------------------------HHHHHHHHHTTCCTTCCC----TTCCCHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC----CCCcCHHHHHHHcCCHHHH
Confidence 6666666666652 566666666666665543 2334788888888889999
Q ss_pred HHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778 256 LILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD 300 (575)
Q Consensus 256 ~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 300 (575)
++|++++++ ++.+|..|+||||+|+++++.+++++|+++|+...
T Consensus 175 ~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 175 KVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 999999998 78899999999999999999999999999988653
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.8e-35 Score=290.69 Aligned_cols=245 Identities=18% Similarity=0.207 Sum_probs=209.2
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
.|.||||.|+..|+.+.++.|++. +.+++.. |.+|.||||+|+..|+.++|++|+++ |++++.+|..|.||||+|+
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHH
Confidence 578999999999999999999985 7889887 89999999999999999999999998 9999999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.++.... .+..+..+.++++ ..+..++
T Consensus 115 ~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l 185 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWL 185 (299)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHH
Confidence 999999999999999996 8899999999999999999999999987655 2222223333332 3344556
Q ss_pred HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778 162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE 241 (575)
Q Consensus 162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t 241 (575)
.. ........+..|.||||+|+..|+ .+++++|++.|++++..+ ..|.|
T Consensus 186 ~~-~~~~~~~~~~~g~t~L~~A~~~g~--------------------------~~~v~~Ll~~g~d~~~~d----~~g~t 234 (299)
T 1s70_B 186 NS-GHINDVRHAKSGGTALHVAAAKGY--------------------------TEVLKLLIQARYDVNIKD----YDGWT 234 (299)
T ss_dssp HH-TCCCCCCCTTTCCCHHHHHHHHTC--------------------------HHHHHHHHTTTCCTTCCC----TTCCC
T ss_pred hc-cCcchhhhcCCCCCHHHHHHHCCc--------------------------HHHHHHHHHcCCCCCCcC----CCCCc
Confidence 65 455556678899999999999994 799999999999998766 34569
Q ss_pred HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778 242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ 294 (575)
Q Consensus 242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~ 294 (575)
|||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.. .+.++.+++
T Consensus 235 pL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~-~~~l~~l~~ 285 (299)
T 1s70_B 235 PLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADEDI-LGYLEELQK 285 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSGG-GHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999999999 8999999999999997643 344444444
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-35 Score=299.35 Aligned_cols=253 Identities=13% Similarity=0.048 Sum_probs=204.0
Q ss_pred cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcccc-----------------ccCCCh
Q 037778 15 TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQE-----------------NNVGYT 77 (575)
Q Consensus 15 ~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-----------------d~~g~T 77 (575)
....++++.+++ .|.+++.. +..|.|++| |+.++|+.|+++ |.+.+.. .....+
T Consensus 29 ~~~~dlv~~ll~-~ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (327)
T 1sw6_A 29 TFTHDLTSDFLS-SPLKIMKA-LPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99 (327)
T ss_dssp ECCTTCCCSTTT-SSCCCEEC-BCCCCCCCH-----HHHHHHHHHHHH--HHC---------------------------
T ss_pred hhcCchHHHHhh-CCcccccC-CCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhcccccccccccCCccc
Confidence 455667877777 69999998 899999988 999999999998 6665431 111223
Q ss_pred HHHHHHHcCCHHHHHHHHhcCcccccc-CCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc--
Q 037778 78 ALFFAAASGMVELAREIMTHNKAIATE-QDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL-- 153 (575)
Q Consensus 78 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~-- 153 (575)
.+|.|+..+..++++.|++.+.++ +. +|..|.||||+|+..|+.++|++|+++++ .+..+.+|.||||+|+..|+
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence 458888888999999999999997 77 89999999999999999999999999999 88899999999999999988
Q ss_pred -HHHHHHHHHhhhccccccccCCCCcHHHHHHh----cCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH----
Q 037778 154 -YDVALRVFEDLHEKSAIGRAANEETALHALAR----KNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK---- 224 (575)
Q Consensus 154 -~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~---- 224 (575)
.++++.|++. ...+++.+|.+|+||||+|+. .++ .+++++|++.
T Consensus 179 ~~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~g~--------------------------~~~v~~Ll~~~~~~ 231 (327)
T 1sw6_A 179 DSGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGC--------------------------SAAAKYYLDILMGW 231 (327)
T ss_dssp HTTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTC--------------------------HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHh-hhccccCCCCCCCCHHHHHHHHcccccc--------------------------HHHHHHHHHHHHHH
Confidence 7888999988 668899999999999999998 553 6788888877
Q ss_pred ----------------hhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhH
Q 037778 225 ----------------VVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRI 288 (575)
Q Consensus 225 ----------------~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~i 288 (575)
+++++..+ ..+.||||.|+. +++|+++ + ++.+|.+|+||||+|+++|+.++
T Consensus 232 ~~~~~~~~i~~~~~~~g~~~~~~~----~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~ 298 (327)
T 1sw6_A 232 IVKKQNRPIQSGTNEKESKPNDKN----GERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISI 298 (327)
T ss_dssp HHHGGGCCEEEC--------------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HhcccchHHHhhhhcccCCccccc----ccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHH
Confidence 45555444 345599999986 8999998 4 67899999999999999999999
Q ss_pred HHHHHhcCcchhhhhhcccCCCCcHHHHHhhCC
Q 037778 289 FKLIYQIGAAKDLILKFEDPKKNNILHLAAMLP 321 (575)
Q Consensus 289 v~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~ 321 (575)
+++|+++|++++. +|.+|+||||+|++.|
T Consensus 299 v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 299 VDALLDYGADPFI----ANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHTTCCTTC----CCTTSCCGGGGTCC--
T ss_pred HHHHHHcCCCCcc----cCCCCCCHHHHHHhcC
Confidence 9999999999865 9999999999999865
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.3e-34 Score=281.25 Aligned_cols=230 Identities=11% Similarity=0.115 Sum_probs=202.6
Q ss_pred HcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHH
Q 037778 49 AAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128 (575)
Q Consensus 49 ~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 128 (575)
...+.+-+..++.. + +++.+|.+|.||||+|+..|+.+++++|++.|+++ +.. +|.||||+|+..|+.+++++|
T Consensus 8 ~~~~~~~v~~lL~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSS--K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGCCHHHHHHHHHS--T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred HhcCHHHHHHHHHh--C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHH
Confidence 34455555555554 2 68999999999999999999999999999999986 555 499999999999999999999
Q ss_pred Hhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCC-CcHHHHHHhcCCCCcccchhhhhhhccchh
Q 037778 129 YGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANE-ETALHALARKNLNYSHFTKQYQRGFFSAKD 206 (575)
Q Consensus 129 l~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g-~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~ 206 (575)
++.++ .+..+..|.||||+|+..++.++++.|+++ +.+++.+|..| .||||+|+..++
T Consensus 82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~------------------ 141 (285)
T 3kea_A 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLND------------------ 141 (285)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTC------------------
T ss_pred HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCC------------------
Confidence 99999 788899999999999999999999999998 99999999999 899999999994
Q ss_pred hhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch-HHHHHHcCC
Q 037778 207 IENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI-FHTAVLHRR 285 (575)
Q Consensus 207 ~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~-Lh~A~~~~~ 285 (575)
.+++++|++.|++.... ..|.||||.|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+.+++
T Consensus 142 --------~~~v~~Ll~~g~~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~ 207 (285)
T 3kea_A 142 --------VSIVSYFLSEIPSTFDL-----AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKD 207 (285)
T ss_dssp --------HHHHHHHHTTSCTTCCC-----STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTC
T ss_pred --------HHHHHHHHhCCCccccc-----cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCC
Confidence 89999999998776332 1445999999999999999999999999 89999999998 999999999
Q ss_pred hhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778 286 KRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 286 ~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
.+++++|+++|++++. +| +.|+..++.+++++|
T Consensus 208 ~~~v~~Ll~~gad~~~----~~-------~~a~~~~~~~iv~~L 240 (285)
T 3kea_A 208 IEMLQALFKYDINIYS----AN-------LENVLLDDAEIAKMI 240 (285)
T ss_dssp HHHHHHHTTSCBCSTT----TT-------GGGGTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC----CC-------hhhhhcCCHHHHHHH
Confidence 9999999999999865 55 466777877766655
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=267.53 Aligned_cols=226 Identities=19% Similarity=0.183 Sum_probs=203.7
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALF 80 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh 80 (575)
+.+|.++||.|+..|+.+.++.+++ .+.+++.+ +..|.||||+|+..|+.+++++|++. +.+++..+ ..|.||||
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVE-AGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHH-cCCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhH
Confidence 3578899999999999999999998 47888887 89999999999999999999999999 77766544 55999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc-HHHHH
Q 037778 81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL-YDVAL 158 (575)
Q Consensus 81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~-~~~~~ 158 (575)
+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++.+. .+..+.+|.||||.|+..+. .++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence 999999999999999999996 8899999999999999999999999999998 78889999999999997666 78888
Q ss_pred HHHHhhhccccccccC-CCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhccc
Q 037778 159 RVFEDLHEKSAIGRAA-NEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLI 237 (575)
Q Consensus 159 ~Ll~~~~~~~~~~~d~-~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~ 237 (575)
.|++. +.+++..+. .|.||||+|+..++ .+++++|++.|++++..+ .
T Consensus 161 ~L~~~--~~~~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~----~ 208 (240)
T 3eu9_A 161 LLLTF--NVSVNLGDKYHKNTALHWAVLAGN--------------------------TTVISLLLEAGANVDAQN----I 208 (240)
T ss_dssp HHHHT--TCCTTCCCTTTCCCHHHHHHHHTC--------------------------HHHHHHHHHHTCCTTCBC----T
T ss_pred HHHhc--CCCcchhhccCCCcHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC----C
Confidence 88887 888888887 99999999999994 899999999999988765 4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHCCC
Q 037778 238 AEPELIFDAARQGNLEFLLILIREYPD 264 (575)
Q Consensus 238 ~~~tpLh~Aa~~g~~~iv~~Ll~~~~d 264 (575)
.|.||+|+|++.|+.+++++|++.+++
T Consensus 209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 209 KGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 456999999999999999999999877
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.3e-34 Score=276.29 Aligned_cols=225 Identities=16% Similarity=0.161 Sum_probs=189.8
Q ss_pred CCCCCChHHhHHHHcCCHHHHHHHHHcCC--CCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHH
Q 037778 36 ISKRKDTALHIAAAAKQYGFVKELVQRME--PGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPI 113 (575)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~--~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 113 (575)
.|.+|.||||+|+..|+.+++++|++... +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L 82 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL 82 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHH
Confidence 38899999999999999999999998741 2378999999999999999999999999999999996 88999999999
Q ss_pred HHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcc
Q 037778 114 DLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSH 192 (575)
Q Consensus 114 ~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~ 192 (575)
|+|+..|+.+++++|++.++ .. .+...+..+..|.||||+|+..++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~-----------------------------~~~~~~~~~~~g~t~L~~A~~~~~---- 129 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPH-----------------------------LHSILKATNYNGHTCLHLASIHGY---- 129 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTS-----------------------------SSCGGGCCCTTCCCHHHHHHHTTC----
T ss_pred HHHHHcCCHHHHHHHHhcccchh-----------------------------HHHHhhccCCCCCCHHHHHHHcCC----
Confidence 99999999999999999876 11 133445678889999999999884
Q ss_pred cchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCC
Q 037778 193 FTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDEN 272 (575)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~ 272 (575)
.+++++|++.|++++..+ ...|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 130 ----------------------~~~v~~Ll~~g~~~~~~~---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 183 (236)
T 1ikn_D 130 ----------------------LGIVELLVSLGADVNAQE---PCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQ 183 (236)
T ss_dssp ----------------------HHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTT
T ss_pred ----------------------HHHHHHHHHcCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCC
Confidence 789999999998888765 32456999999999999999999999999 8999999
Q ss_pred CCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCC
Q 037778 273 GYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPP 322 (575)
Q Consensus 273 G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~ 322 (575)
|+||||+|+.+++.+++++|+++|++... ..++.+|.||.+.+.....
T Consensus 184 g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~~~ 231 (236)
T 1ikn_D 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQ--MLPESEDEESYDTESEFTE 231 (236)
T ss_dssp CCCGGGGCTTSSCHHHHHHHHTTSCGGGS--SCCCCCTTTCCCCC-----
T ss_pred CCCHHHHHHccCchHHHHHHHHcchhhhh--cCCccchHHHHhhhccccc
Confidence 99999999999999999999999998763 4589999999988765543
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.7e-33 Score=262.98 Aligned_cols=208 Identities=15% Similarity=0.133 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHcCCCCCcccc-ccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHH
Q 037778 51 KQYGFVKELVQRMEPGDLAQE-NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLY 129 (575)
Q Consensus 51 g~~~~v~~Ll~~~~~~~l~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 129 (575)
|+.+++++|++. +.+++.. |.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 677888888887 6776654 788888888888888888888888888886 778888888888888888888888888
Q ss_pred hccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhH
Q 037778 130 GQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIEN 209 (575)
Q Consensus 130 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (575)
+.++ ..++.++.+|.||||+|+..++
T Consensus 79 ~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~--------------------- 104 (223)
T 2f8y_A 79 RNRA---------------------------------TDLDARMHDGTTPLILAARLAV--------------------- 104 (223)
T ss_dssp HBTT---------------------------------SCTTCCCTTCCCHHHHHHHHTC---------------------
T ss_pred HcCC---------------------------------CCcccCCCCCCcHHHHHHHhCc---------------------
Confidence 7643 3556778899999999999884
Q ss_pred hhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHH
Q 037778 210 KRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIF 289 (575)
Q Consensus 210 ~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv 289 (575)
.+++++|++.+++++..+ ..+.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+.+++.+++
T Consensus 105 -----~~~~~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v 174 (223)
T 2f8y_A 105 -----EGMLEDLINSHADVNAVD----DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETA 174 (223)
T ss_dssp -----HHHHHHHHHTTCCTTCBC----TTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred -----HHHHHHHHHcCCCCcCcC----CCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHH
Confidence 789999999999888765 3455999999999999999999999999 889999999999999999999999
Q ss_pred HHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778 290 KLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 290 ~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
++|+++|++++. +|..|+||||+|++.++.+++++|
T Consensus 175 ~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 175 KVLLDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp HHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCCcc----ccccCCCHHHHHHHhcchHHHHHH
Confidence 999999999865 899999999999999998877665
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=8.1e-32 Score=257.63 Aligned_cols=197 Identities=20% Similarity=0.195 Sum_probs=177.7
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCc-----cccccCCChH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL-----AQENNVGYTA 78 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l-----~~~d~~g~Tp 78 (575)
.|+||||.|+..|+.+.++.+++..+.+++.+ |.+|.||||+|+..|+.+++++|++. +.++ +.+|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEA--APELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CchhccccccccCCCCcCH
Confidence 58999999999999999999999778999988 99999999999999999999999999 6765 6778899999
Q ss_pred HHHHHHcCCHHHHHHHHhcCccccccCCC-------------CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhH
Q 037778 79 LFFAAASGMVELAREIMTHNKAIATEQDD-------------KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHL 144 (575)
Q Consensus 79 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 144 (575)
||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++|++.++ .+..|.+|.||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 99999999999999999999986 55544 79999999999999999999999999 88899999999
Q ss_pred HHHHHHhCcHHHH----HHHHHhhhcccc------ccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHH
Q 037778 145 LVTLIQTDLYDVA----LRVFEDLHEKSA------IGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKA 214 (575)
Q Consensus 145 L~~a~~~~~~~~~----~~Ll~~~~~~~~------~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (575)
||+|+..++.+++ +.|++. +.+. +.+|.+|.||||+|+..++
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~--g~~~~~~~~~~~~~~~g~tpl~~A~~~g~-------------------------- 209 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSY--DGGDHLKSLELVPNNQGLTPFKLAGVEGN-------------------------- 209 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHT--TCSCSSCCGGGCCCTTSCCHHHHHHHHTC--------------------------
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCchhhhhhhccCCCCCCCHHHHHHHcCC--------------------------
Confidence 9999999999988 888887 6555 5889999999999999994
Q ss_pred HHHHHHHHHHhhhCChhh
Q 037778 215 LKLVQRLWEKVVLLSDSR 232 (575)
Q Consensus 215 ~e~v~~L~~~~~~~~~~~ 232 (575)
.+++++|+++|.......
T Consensus 210 ~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 210 IVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCccchhhh
Confidence 899999999998766543
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=8.3e-32 Score=257.54 Aligned_cols=209 Identities=17% Similarity=0.078 Sum_probs=173.8
Q ss_pred CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCcccc----ccCCCCCCcHHH
Q 037778 39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIA----TEQDDKRVLPID 114 (575)
Q Consensus 39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~ 114 (575)
.|+||||+|++.|+.+++++|++.. +.+++.+|..|+||||+|+..|+.+++++|++.++++. +..|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 4899999999999999999999975 88999999999999999999999999999999998853 456778999999
Q ss_pred HHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCccc
Q 037778 115 LAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHF 193 (575)
Q Consensus 115 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~ 193 (575)
+|+..|+.+++++|++.++ .+..+.... .....+..|.+|.||||+|+..++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~----------------------~~~~~~~~~~~g~t~L~~A~~~~~----- 133 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSV----------------------FHYRPHNLIYYGEHPLSFAACVGS----- 133 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGG----------------------GSCCTTCSCCCCSSHHHHHHHHTC-----
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcc----------------------eeecccccccCCCCHHHHHHHcCC-----
Confidence 9999999999999999988 444333211 122233556778888888888773
Q ss_pred chhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHH----HHHHHHCCCcc---
Q 037778 194 TKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFL----LILIREYPDLI--- 266 (575)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv----~~Ll~~~~d~~--- 266 (575)
.+++++|++.|++++..+ ..|.||||+|+..|+.+++ +.|++++++..
T Consensus 134 ---------------------~~~v~~Ll~~ga~~~~~d----~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 188 (232)
T 2rfa_A 134 ---------------------EEIVRLLIEHGADIRAQD----SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188 (232)
T ss_dssp ---------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC
T ss_pred ---------------------HHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh
Confidence 778888888888877665 3445888888888888877 88999988732
Q ss_pred --ccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778 267 --WNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD 300 (575)
Q Consensus 267 --~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 300 (575)
+.+|..|+||||+|+++|+.+++++|+++|....
T Consensus 189 ~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 6889999999999999999999999999987654
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=2.7e-31 Score=247.95 Aligned_cols=199 Identities=20% Similarity=0.153 Sum_probs=147.3
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA 82 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A 82 (575)
.++.||||.|+..|+.+.++.++++.+.+++.. |.+|.||||+|+..|+.+++++|+++ |.+++.+|..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A 79 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYLYA 79 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence 356677777777777777777777666567666 77777777777777777777777777 777777777777777777
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778 83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFE 162 (575)
Q Consensus 83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~ 162 (575)
+..|+.+++++|++.+...++..|..|.||||+|+..|+.+++++|++.+
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------------------------------ 129 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG------------------------------ 129 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC------------------------------
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC------------------------------
Confidence 77777777777775444323667777777777777777777777776653
Q ss_pred hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChH
Q 037778 163 DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPEL 242 (575)
Q Consensus 163 ~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tp 242 (575)
+.+++.+|.+|.||||+|+..++ +
T Consensus 130 ---~~~~~~~~~~g~t~L~~A~~~~~-------------------------------------------------~---- 153 (201)
T 3hra_A 130 ---REDIDFQNDFGYTALIEAVGLRE-------------------------------------------------G---- 153 (201)
T ss_dssp ---CCCTTCCCTTSCCHHHHHHHSSC-------------------------------------------------C----
T ss_pred ---CCCcCCCCCCCCCHHHHHHHhcc-------------------------------------------------c----
Confidence 24556677778888888776651 0
Q ss_pred HHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778 243 IFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG 296 (575)
Q Consensus 243 Lh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 296 (575)
..++.+++++|+++|++ ++.+|..|+||||+|+++|+.+++++|+++|
T Consensus 154 -----~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 154 -----NQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp -----SHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred -----hhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 01237888899999888 7888999999999999999999999998875
No 44
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=2.1e-33 Score=283.13 Aligned_cols=261 Identities=8% Similarity=-0.022 Sum_probs=201.3
Q ss_pred CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCcccccc-------------
Q 037778 38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATE------------- 104 (575)
Q Consensus 38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~------------- 104 (575)
....+|+| ..+.++|++|++. |++++.+|..|.|+++ |+.++++.|+++|.+. +.
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~--ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~~ 88 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSS--PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP-EIQEMPTSLNNDSSN 88 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTS--SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------
T ss_pred cccccchh----hhcCchHHHHhhC--CcccccCCCCCCcccC-----chhHHHHHHHHhccCC-ccccchHhhhccccc
Confidence 34566666 4667889999999 9999999999999988 9999999999998763 22
Q ss_pred ----CCCCCCcHHHHHHHcCChHHHHHHHhccc-ccc-CcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCc
Q 037778 105 ----QDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSL-NDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEET 178 (575)
Q Consensus 105 ----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~-~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~t 178 (575)
......+.+|+|+..+..++++.|++.+. .+. .+.+|.||||+|+..|+.+++++|+++ +.+++.+|.+|+|
T Consensus 89 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~T 166 (327)
T 1sw6_A 89 RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGES 166 (327)
T ss_dssp ---------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCC
T ss_pred ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence 11122234588888888999999999998 777 899999999999999999999999998 8999999999999
Q ss_pred HHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh-hhCChhhhhcccCCChHHHHHHH----cCCHH
Q 037778 179 ALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV-VLLSDSRISNLIAEPELIFDAAR----QGNLE 253 (575)
Q Consensus 179 pLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~-~~~~~~~~~~~~~~~tpLh~Aa~----~g~~~ 253 (575)
|||+|+..+ +....+.++.|++.+ .+++..+ ..|.||||+|+. .|+.+
T Consensus 167 pLh~A~~~g-----------------------~~~~~~~~~~ll~~~~~~~~~~d----~~g~tpLh~A~~~~~~~g~~~ 219 (327)
T 1sw6_A 167 CLVKAVKSV-----------------------NNYDSGTFEALLDYLYPCLILED----SMNRTILHHIIITSGMTGCSA 219 (327)
T ss_dssp HHHHHHHSS-----------------------HHHHTTCHHHHHHHHGGGGGEEC----TTCCCHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHhc-----------------------ccccHHHHHHHHHhhhccccCCC----CCCCCHHHHHHHHccccccHH
Confidence 999999988 111245667777776 4555544 445699999999 99999
Q ss_pred HHHHHHHH--------------------CCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcH
Q 037778 254 FLLILIRE--------------------YPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNI 313 (575)
Q Consensus 254 iv~~Ll~~--------------------~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~ 313 (575)
+++.|++. +++ ++.+|..|+||||.|+. +++|++++ + |.+|.+|+||
T Consensus 220 ~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~--~----n~~d~~G~Tp 286 (327)
T 1sw6_A 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM--L----NAQDSNGDTC 286 (327)
T ss_dssp HHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHT--T----TCCCTTSCCH
T ss_pred HHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC--C----CCCCCCCCCH
Confidence 99999988 677 78899999999999985 89999883 3 5699999999
Q ss_pred HHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHH
Q 037778 314 LHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTR 371 (575)
Q Consensus 314 LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~ 371 (575)
||+|+..|+.++++.| +..|++++.+|++|+||+++|.+
T Consensus 287 Lh~A~~~g~~~~v~~L-------------------l~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 287 LNIAARLGNISIVDAL-------------------LDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHHHHHHCCHHHHHHH-------------------HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred HHHHHHcCCHHHHHHH-------------------HHcCCCCcccCCCCCCHHHHHHh
Confidence 9999999998776665 45799999999999999999864
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.9e-31 Score=247.81 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=145.5
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+..|+||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|++.. +.+++.+|..|.||||+
T Consensus 36 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~ 112 (201)
T 3hra_A 36 DTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHA-TPDLNKHNRYGGNALIP 112 (201)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCSHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcc-CcccccccCCCCcHHHH
Confidence 4678999999999999999999998 58899987 899999999999999999999999764 78999999999999999
Q ss_pred HHHcCCHHHHHHHHhcC-ccccccCCCCCCcHHHHHHHcCC-----hHHHHHHHhccc-cccCcCchhhHHHHHHHhCcH
Q 037778 82 AAASGMVELAREIMTHN-KAIATEQDDKRVLPIDLAASLGH-----EDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLY 154 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~ 154 (575)
|+..|+.+++++|++.+ .++ +.+|..|.||||+|+..++ .+++++|++.++ .+..+.+|.||||+|+..++.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 191 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Confidence 99999999999999999 564 8999999999999999998 899999999988 777888888999999999999
Q ss_pred HHHHHHHHh
Q 037778 155 DVALRVFED 163 (575)
Q Consensus 155 ~~~~~Ll~~ 163 (575)
++++.|+++
T Consensus 192 ~~~~~Ll~~ 200 (201)
T 3hra_A 192 EISKILAQY 200 (201)
T ss_dssp HHHHHHHTC
T ss_pred hHHHHHHhc
Confidence 988888864
No 46
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.4e-32 Score=263.70 Aligned_cols=214 Identities=12% Similarity=0.018 Sum_probs=162.3
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCC---CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHE---GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTA 78 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~---~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~Tp 78 (575)
+.+|+||||.|+..|+.++++.+++... .+++.+ |..|.||||+|+..|+.+++++|+++ |++++.+|..|.||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTP 81 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence 5789999999999999999999988643 367777 89999999999999999999999998 89999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCcc-----ccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcC-chhhHHHHHHHh
Q 037778 79 LFFAAASGMVELAREIMTHNKA-----IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDE-DRSHLLVTLIQT 151 (575)
Q Consensus 79 Lh~Aa~~g~~~iv~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~-~g~t~L~~a~~~ 151 (575)
||+|+..|+.+++++|++.+++ ..+..+..|.||||+|+..|+.+++++|++.++ .+..+. .|.||||+|+..
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 161 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 9999999999999999999864 236788889999999999999999999998876 444443 555555555555
Q ss_pred CcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChh
Q 037778 152 DLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDS 231 (575)
Q Consensus 152 ~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~ 231 (575)
++.+++++|++. +.+++.+|..|.
T Consensus 162 ~~~~~v~~Ll~~--ga~~~~~~~~g~------------------------------------------------------ 185 (236)
T 1ikn_D 162 QNPDLVSLLLKC--GADVNRVTYQGY------------------------------------------------------ 185 (236)
T ss_dssp TCHHHHHHHHTT--TCCSCCCCTTCC------------------------------------------------------
T ss_pred CCHHHHHHHHHc--CCCCCcccCCCC------------------------------------------------------
Confidence 555555555554 444444444444
Q ss_pred hhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcc-ccccCCCCchHHHHHHc
Q 037778 232 RISNLIAEPELIFDAARQGNLEFLLILIREYPDLI-WNIDENGYTIFHTAVLH 283 (575)
Q Consensus 232 ~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~-~~~d~~G~t~Lh~A~~~ 283 (575)
||||+|+..|+.+++++|+++|++.. ...+..|.|+.+.+...
T Consensus 186 ---------tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 186 ---------SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp ---------CGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred ---------CHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 55555555667777777777777632 35677788877665443
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.8e-31 Score=259.42 Aligned_cols=199 Identities=20% Similarity=0.176 Sum_probs=115.1
Q ss_pred cchHHHHHHHcCCHHHHHHHHh---hCCCcccc----cCCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccc----
Q 037778 5 RRLKLYRAALTGDWAVARGIYD---VHEGEIRA----PISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQ---- 70 (575)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~---- 70 (575)
|+||||.|+..|+.+.++.+++ +.+.+++. + |.+|.||||+|+.. |+.++|++|++. +.+++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~~~ 78 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQI--DKDSGNPKPL 78 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHH--HHHTTCSSCG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhc--CCcccchhhh
Confidence 5566666666666653332222 23455554 3 55566666666665 666666666655 444332
Q ss_pred -------cccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCC-------------CCcHHHHHHHcCChHHHHHHHh
Q 037778 71 -------ENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDK-------------RVLPIDLAASLGHEDMVVYLYG 130 (575)
Q Consensus 71 -------~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~v~~Ll~ 130 (575)
+|..|.||||+|+..|+.+++++|+++|+++ +..+.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2244556666666666666666666555554 444443 4444444444444444444444
Q ss_pred ccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHh
Q 037778 131 QTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENK 210 (575)
Q Consensus 131 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (575)
.+. . +.+++.+|.+|+||||+|+..+
T Consensus 158 ~~~-----------------------------~--ga~~n~~d~~g~TpLh~A~~~~----------------------- 183 (256)
T 2etb_A 158 NPH-----------------------------Q--PASLEATDSLGNTVLHALVMIA----------------------- 183 (256)
T ss_dssp CSS-----------------------------C--CCCTTCCCTTSCCHHHHHHHHC-----------------------
T ss_pred ccc-----------------------------c--CCCcCccCCCCCCHHHHHHHcc-----------------------
Confidence 210 2 5566677777777777777632
Q ss_pred hHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHH-------HHHHHHHHCCCcc-------ccccCCCCch
Q 037778 211 RQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLE-------FLLILIREYPDLI-------WNIDENGYTI 276 (575)
Q Consensus 211 ~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~-------iv~~Ll~~~~d~~-------~~~d~~G~t~ 276 (575)
.|+.+ +++.|+++|++ + +.+|..|+||
T Consensus 184 --------------------------------------~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tp 224 (256)
T 2etb_A 184 --------------------------------------DNSPENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTP 224 (256)
T ss_dssp --------------------------------------CSCHHHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCH
T ss_pred --------------------------------------cCCchhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCH
Confidence 12222 55555555555 3 6778888888
Q ss_pred HHHHHHcCChhHHHHHHhcCcchh
Q 037778 277 FHTAVLHRRKRIFKLIYQIGAAKD 300 (575)
Q Consensus 277 Lh~A~~~~~~~iv~~Ll~~~~~~~ 300 (575)
||+|+++|+.+++++|+++|.+..
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCC
Confidence 888888888888888888877654
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4.5e-31 Score=256.52 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=145.4
Q ss_pred CcccchHHHHHHHc---CCHHHHHHHHhhCCCccccc----------CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCc
Q 037778 2 IRRRRLKLYRAALT---GDWAVARGIYDVHEGEIRAP----------ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~---g~~~~v~~lL~~~~~~~~~~----------~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l 68 (575)
+..|+||||+|+.. |+.++++.|++. +.+++.. .|..|.||||+|+..|+.+++++|+++ |+++
T Consensus 40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~ 116 (256)
T 2etb_A 40 GSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADV 116 (256)
T ss_dssp TTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred CCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence 45799999999999 999999999985 6666532 136799999999999999999999999 8999
Q ss_pred cccccC-------------CChHHHHHHHcCCHHHHHHHHh---cCccccccCCCCCCcHHHHHHH--cCChH-------
Q 037778 69 AQENNV-------------GYTALFFAAASGMVELAREIMT---HNKAIATEQDDKRVLPIDLAAS--LGHED------- 123 (575)
Q Consensus 69 ~~~d~~-------------g~TpLh~Aa~~g~~~iv~~Ll~---~~~~~~~~~~~~g~tpL~~A~~--~g~~~------- 123 (575)
+.+|.. |.||||+|+..|+.+++++|++ .|+++ +.+|..|.||||+|+. .++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 999886 9999999999999999999999 89996 9999999999999999 77877
Q ss_pred HHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhcccc-------ccccCCCCcHHHHHHhcCCCCcccchh
Q 037778 124 MVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSA-------IGRAANEETALHALARKNLNYSHFTKQ 196 (575)
Q Consensus 124 ~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~-------~~~d~~g~tpLh~a~~~~~~~~~~~~~ 196 (575)
++++|++.+ .++ +.+|.+|.||||+|+..|+
T Consensus 196 iv~~Ll~~g----------------------------------a~~~~~~~~~~~~d~~g~tpL~~A~~~g~-------- 233 (256)
T 2etb_A 196 MYDGLLQMG----------------------------------ARLCPTVQLEEISNHQGLTPLKLAAKEGK-------- 233 (256)
T ss_dssp HHHHHHHHH----------------------------------HHHSTTCCGGGCCCTTSCCHHHHHHHTTC--------
T ss_pred HHHHHHHcC----------------------------------CCcccccccccccCCCCCCHHHHHHHhCC--------
Confidence 666666554 344 6889999999999999994
Q ss_pred hhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778 197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR 232 (575)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~ 232 (575)
.+++++|+++|.+.....
T Consensus 234 ------------------~~~v~~Ll~~g~~~~~~~ 251 (256)
T 2etb_A 234 ------------------IEIFRHILQREFSGAAAH 251 (256)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHhCCCCCCCcc
Confidence 899999999998765443
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.1e-30 Score=256.26 Aligned_cols=211 Identities=14% Similarity=0.083 Sum_probs=134.5
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcC--CCCCcc----ccccCCChHHHHHHHc---CCHHHHHHHHhcCccc------
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRM--EPGDLA----QENNVGYTALFFAAAS---GMVELAREIMTHNKAI------ 101 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~l~----~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~------ 101 (575)
|..|+||||.|++.|+.++|+.|++.. .+.+++ .+|..|.||||+|+.. |+.+++++|++.|++.
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 666777777777777777776666531 133333 3466677777777765 7777777777766542
Q ss_pred cc----cCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcC--------------chhhHHHHHHHhCcHHHHHHHHH
Q 037778 102 AT----EQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDE--------------DRSHLLVTLIQTDLYDVALRVFE 162 (575)
Q Consensus 102 ~~----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~--------------~g~t~L~~a~~~~~~~~~~~Ll~ 162 (575)
.+ ..|..|.||||+|+..|+.+++++|++.++ .+..+. .|.||||+|+..++.+++++|++
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 01 145567777777777777777777777766 444444 67788888888888888888887
Q ss_pred ---hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCC
Q 037778 163 ---DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAE 239 (575)
Q Consensus 163 ---~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~ 239 (575)
. +.+++.+|.+|+||||+|+..++.. ........+++++|++.|++++...
T Consensus 170 ~~~~--gad~~~~d~~g~tpLh~A~~~~~~~-----------------~~~~~~~~~~v~~Ll~~ga~~n~~~------- 223 (273)
T 2pnn_A 170 NSWQ--PADISARDSVGNTVLHALVEVADNT-----------------VDNTKFVTSMYNEILILGAKLHPTL------- 223 (273)
T ss_dssp CSSC--CCCTTCCCTTSCCHHHHHHHHCCSC-----------------HHHHHHHHHHHHHHHHHHHHHCTTC-------
T ss_pred cccC--CCCceeeCCCCCcHHHHHHHccCcc-----------------hhHHHHHHHHHHHHHHhhhhccccc-------
Confidence 6 7888899999999999999877300 0001112466667777766655311
Q ss_pred ChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCc
Q 037778 240 PELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA 297 (575)
Q Consensus 240 ~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~ 297 (575)
+.++.+|..|+||||+|+++|+.+++++|+++|+
T Consensus 224 ------------------------~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 224 ------------------------KLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp ------------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ------------------------ccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 0013455566666666666666666666666665
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2.4e-30 Score=253.93 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=170.7
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhh---CCCcccc---cCCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCC-----
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDV---HEGEIRA---PISKRKDTALHIAAAA---KQYGFVKELVQRMEPGD----- 67 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~---~~~~~~~---~~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~----- 67 (575)
+..|.||||.|+..|+.++|+.|++. .+.+++. ..|..|.||||+|+.. |+.++|++|++. +++
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~--ga~~~~~~ 87 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV--ARKTDSLK 87 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH--HHHTTCHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh--hccccchh
Confidence 56899999999999999999998873 4444432 3378999999999987 999999999998 544
Q ss_pred --cc----ccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCC--------------CCCcHHHHHHHcCChHHHHH
Q 037778 68 --LA----QENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDD--------------KRVLPIDLAASLGHEDMVVY 127 (575)
Q Consensus 68 --l~----~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~~v~~ 127 (575)
++ .+|..|.||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 22 26778999999999999999999999999997 77776 79999999999999999999
Q ss_pred HHh---ccc-cccCcCchhhHHHHHHHhCc---------HHHHHHHHHhhhccccc-------cccCCCCcHHHHHHhcC
Q 037778 128 LYG---QTK-NSLNDEDRSHLLVTLIQTDL---------YDVALRVFEDLHEKSAI-------GRAANEETALHALARKN 187 (575)
Q Consensus 128 Ll~---~~~-~~~~~~~g~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~~~-------~~d~~g~tpLh~a~~~~ 187 (575)
|++ .++ .+..|.+|.||||+|+..++ .++++.|++. +.+++ .+|.+|.||||+|+..+
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~~n~~~~~~~~~d~~g~TpL~~A~~~g 244 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL--GAKLHPTLKLEEITNRKGLTPLALAASSG 244 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh--hhhcccccccccccCCCCCCHHHHHHHhC
Confidence 999 777 88899999999999999887 7999999997 77775 58999999999999999
Q ss_pred CCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhh-hCCh
Q 037778 188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVV-LLSD 230 (575)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~-~~~~ 230 (575)
+ .+++++|+++|+ ++..
T Consensus 245 ~--------------------------~~iv~~Ll~~ga~dp~~ 262 (273)
T 2pnn_A 245 K--------------------------IGVLAYILQREIHEPEC 262 (273)
T ss_dssp C--------------------------HHHHHHHHHHHTC----
T ss_pred h--------------------------HHHHHHHHHCCCCCchh
Confidence 4 889999999998 4443
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=8.6e-30 Score=230.39 Aligned_cols=157 Identities=21% Similarity=0.260 Sum_probs=147.2
Q ss_pred hHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC
Q 037778 7 LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG 86 (575)
Q Consensus 7 t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g 86 (575)
++|+.||+.|+.++|+.||+ .+++++.+ |.+|+||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcC
Confidence 57999999999999999998 58999998 99999999999999999999999999 9999999999999999999999
Q ss_pred CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhh
Q 037778 87 MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLH 165 (575)
Q Consensus 87 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~ 165 (575)
+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.++ .+..|.+|.||||+|+..++.++++.|+++
T Consensus 82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-- 158 (169)
T 4gpm_A 82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-- 158 (169)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence 999999999999997 9999999999999999999999999999999 888999999999999999999999999997
Q ss_pred ccccc
Q 037778 166 EKSAI 170 (575)
Q Consensus 166 ~~~~~ 170 (575)
|++++
T Consensus 159 GA~ie 163 (169)
T 4gpm_A 159 GGWLE 163 (169)
T ss_dssp -----
T ss_pred CCCcC
Confidence 77654
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=5.1e-30 Score=249.62 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=174.0
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHh---hCCCccccc---CCCCCChHHhHHH---HcCCHHHHHHHHHcCCCC------
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYD---VHEGEIRAP---ISKRKDTALHIAA---AAKQYGFVKELVQRMEPG------ 66 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~~---~~~~g~TpLh~Aa---~~g~~~~v~~Ll~~~~~~------ 66 (575)
++.+.++||.|+..|+.+.++.+++ +.+.+++.. .|..|.||||+|+ +.|+.++|++|++. ++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI--AEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH--HHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh--cccccchH
Confidence 5689999999999999998777776 356677654 1377999999999 77999999999998 43
Q ss_pred -----CccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC--------------CCCCcHHHHHHHcCChHHHHH
Q 037778 67 -----DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD--------------DKRVLPIDLAASLGHEDMVVY 127 (575)
Q Consensus 67 -----~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~~v~~ 127 (575)
+++.+|..|.||||+|+..|+.+++++|+++|+++ +..+ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 35566779999999999999999999999999997 7777 689999999999999999999
Q ss_pred HHh---ccc-cccCcCchhhHHHHHHHhCc---------HHHHHHHHHhhhcccc-------ccccCCCCcHHHHHHhcC
Q 037778 128 LYG---QTK-NSLNDEDRSHLLVTLIQTDL---------YDVALRVFEDLHEKSA-------IGRAANEETALHALARKN 187 (575)
Q Consensus 128 Ll~---~~~-~~~~~~~g~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~~-------~~~d~~g~tpLh~a~~~~ 187 (575)
|++ .++ .+..|.+|.||||+|+..++ .++++.|++. +.++ +.+|.+|.||||+|+..|
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK--CAKLFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH--HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh--CcccccccchhhcccCCCCCHHHHHHHcC
Confidence 999 777 88899999999999998777 6999999997 7777 679999999999999999
Q ss_pred CCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChh
Q 037778 188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDS 231 (575)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~ 231 (575)
+ .+++++|+++|.+....
T Consensus 237 ~--------------------------~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 237 K--------------------------IGIFQHIIRREIADAAA 254 (260)
T ss_dssp C--------------------------HHHHHHHHHHHHHHHC-
T ss_pred C--------------------------HHHHHHHHHhCCCcccc
Confidence 4 89999999999876543
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.5e-30 Score=250.82 Aligned_cols=212 Identities=15% Similarity=0.071 Sum_probs=157.0
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHH----cCCCCCccccc----cCCChHHHHHH---HcCCHHHHHHHHhcCccc----
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQ----RMEPGDLAQEN----NVGYTALFFAA---ASGMVELAREIMTHNKAI---- 101 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~l~~~d----~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~~---- 101 (575)
+..|+||||.|++.|+.+.++.|++ . +.+++.++ ..|.||||+|+ +.|+.+++++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999996555555 7 78888766 67999999999 779999999999987642
Q ss_pred ------cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCc--------------CchhhHHHHHHHhCcHHHHHHH
Q 037778 102 ------ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLND--------------EDRSHLLVTLIQTDLYDVALRV 160 (575)
Q Consensus 102 ------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~--------------~~g~t~L~~a~~~~~~~~~~~L 160 (575)
....|..|.||||+|+..|+.+++++|++.++ .+..+ ..|.||||+|+..|+.++++.|
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 14455689999999999999999999999998 66655 5688888888888888888888
Q ss_pred HH---hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhccc
Q 037778 161 FE---DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLI 237 (575)
Q Consensus 161 l~---~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~ 237 (575)
++ . +.+++.+|.+|+||||+|+..++. .........+++++|++.|++++...
T Consensus 160 l~~~~~--ga~~~~~d~~g~TpLh~A~~~~~~-----------------~~~~~~~~~~~v~~Ll~~ga~~~~~~----- 215 (260)
T 3jxi_A 160 TENGHK--QADLRRQDSRGNTVLHALVAIADN-----------------TRENTKFVTKMYDLLLIKCAKLFPDT----- 215 (260)
T ss_dssp HHCSSC--CCCTTCCCTTSCCHHHHHHHHCCS-----------------SHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred Hhcccc--CCCCcccCCCCCcHHHHHHHhccC-----------------chhHHHHHHHHHHHHHHhCccccccc-----
Confidence 88 6 777778888888888888865520 00000011345555555554443211
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778 238 AEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD 300 (575)
Q Consensus 238 ~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 300 (575)
+..+.+|.+|+||||+|+++|+.+++++|+++|.+..
T Consensus 216 --------------------------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 216 --------------------------NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp --------------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------------------chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 0125677788888888888888888888888777654
No 54
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=3.6e-29 Score=226.29 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=147.1
Q ss_pred hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778 42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH 121 (575)
Q Consensus 42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 121 (575)
++|+.||+.|+.++|+.|++. |++++.+|.+|+||||+|+..|+.++++.|++.|+++ +.+|.+|.||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence 579999999999999999999 9999999999999999999999999999999999997 9999999999999999999
Q ss_pred hHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhh
Q 037778 122 EDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRG 200 (575)
Q Consensus 122 ~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~ 200 (575)
.+++++|++.++ .+..|.+|+||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|++.++
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~g~------------ 148 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNTSDSDGRTPLDLAREHGN------------ 148 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC------------
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCC------------
Confidence 999999999999 888999999999999999999999999997 99999999999999999999994
Q ss_pred hccchhhhHhhHHHHHHHHHHHHHhhhCCh
Q 037778 201 FFSAKDIENKRQKALKLVQRLWEKVVLLSD 230 (575)
Q Consensus 201 ~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~ 230 (575)
.+++++|+++|++++.
T Consensus 149 --------------~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 149 --------------EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp --------------HHHHHHHHTC------
T ss_pred --------------HHHHHHHHHCCCCcCC
Confidence 7899999999998764
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=3.7e-31 Score=269.76 Aligned_cols=261 Identities=14% Similarity=0.041 Sum_probs=175.3
Q ss_pred chHHHHHHH-cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCC---ccccccCCChHHHH
Q 037778 6 RLKLYRAAL-TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGD---LAQENNVGYTALFF 81 (575)
Q Consensus 6 ~t~L~~Aa~-~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~---l~~~d~~g~TpLh~ 81 (575)
.++++.|+. .++.+.++.+++. +.+++||||+|++.|+.++|++|++. +.. .+..|..|.||||+
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~--ga~~~~~~~~~~~~~tpL~~ 134 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCLL--LTSDEIVKVIQAENYQAFRL 134 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHHc--CCcHHHHHHhccCCCCHHHH
Confidence 345666665 4666666666553 34456999999999999999999988 442 23445678889999
Q ss_pred HHHcCCHHHHHHHHhcCccc--cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-ccc--CcCchhhHHHHHH-HhCcHH
Q 037778 82 AAASGMVELAREIMTHNKAI--ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSL--NDEDRSHLLVTLI-QTDLYD 155 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~--~~~~g~t~L~~a~-~~~~~~ 155 (575)
|++.|+.++|++|+++|++. .+..+.+ .||||+|+..|+.++|++|+++++ .+. .+.+|.||||.|+ ..|+.+
T Consensus 135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e 213 (376)
T 2aja_A 135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 213 (376)
T ss_dssp HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence 99999999999999998641 1222222 889999999999999999999888 444 7788899999999 999999
Q ss_pred HHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhc
Q 037778 156 VALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISN 235 (575)
Q Consensus 156 ~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~ 235 (575)
++++|++. +. +|.||||+|+..|+ .+++++|++.|++++..+
T Consensus 214 iv~~Ll~~--ga-------~~~taL~~Aa~~g~--------------------------~evv~lL~~~ga~~~~~~--- 255 (376)
T 2aja_A 214 VINFLLDC--PV-------MLAYAEIHEFEYGE--------------------------KYVNPFIARHVNRLKEMH--- 255 (376)
T ss_dssp HHHHHTTS--HH-------HHHHHHHCTTTTTT--------------------------TTHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHhC--CC-------ccchHHHHHHHCCC--------------------------HHHHHHHHhcCccccccc---
Confidence 99999886 43 27899999998884 678888888888776554
Q ss_pred ccCCChHHHHHHHcCCHH------------HHHHHHHHCCCc-------------------cccccCCCCchHHHHHHcC
Q 037778 236 LIAEPELIFDAARQGNLE------------FLLILIREYPDL-------------------IWNIDENGYTIFHTAVLHR 284 (575)
Q Consensus 236 ~~~~~tpLh~Aa~~g~~~------------iv~~Ll~~~~d~-------------------~~~~d~~G~t~Lh~A~~~~ 284 (575)
++++.|+..|+.+ +++.|+.++... ....+..+.||||+|+..|
T Consensus 256 -----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g 330 (376)
T 2aja_A 256 -----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330 (376)
T ss_dssp -----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHT
T ss_pred -----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcC
Confidence 4455555555544 223333333210 0122346789999999999
Q ss_pred ChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCcccc
Q 037778 285 RKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNI 328 (575)
Q Consensus 285 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~ 328 (575)
+.+++++|++.|. .+|..|+|++.+|-..|..+..+.
T Consensus 331 ~~e~v~lLl~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 331 NQGACALLLSIPS-------VLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp CTTHHHHHTTSHH-------HHHSCC------------------
T ss_pred cHHHHHHHHcChH-------HHHHHHHhccccccccccccHHHH
Confidence 9999999999763 278899999999999998776543
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.2e-28 Score=224.01 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=152.3
Q ss_pred cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778 5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA 84 (575)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~ 84 (575)
+.||||.|+..|+.+.++.++++.+..++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHH
Confidence 5689999999999999999999866667776 89999999999999999999999999 89999999999999999999
Q ss_pred cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778 85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 163 (575)
.|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999997 8999999999999999999999999999999 888999999999999999999999999998
Q ss_pred hhccccccccCCCCcH
Q 037778 164 LHEKSAIGRAANEETA 179 (575)
Q Consensus 164 ~~~~~~~~~d~~g~tp 179 (575)
+.....++..|.||
T Consensus 158 --~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 --ILKLFQSNLVPADP 171 (172)
T ss_dssp --HHHHSCC-------
T ss_pred --HHHHhcccCCCCCC
Confidence 77777788888776
No 57
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.6e-27 Score=215.46 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=148.9
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
.|.||||.|+..|+.+.++.+++. +.+++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence 588999999999999999999986 7788887 99999999999999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFE 162 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~ 162 (575)
..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||+|+|+..++.++++.|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999997 8999999999999999999999999999998 78899999999999999999999999999
Q ss_pred h
Q 037778 163 D 163 (575)
Q Consensus 163 ~ 163 (575)
+
T Consensus 157 ~ 157 (167)
T 3v31_A 157 H 157 (167)
T ss_dssp H
T ss_pred H
Confidence 8
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=238.58 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=135.7
Q ss_pred CChHHhHHHHcCCHHHHHHHHHcCCCCC--ccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778 40 KDTALHIAAAAKQYGFVKELVQRMEPGD--LAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA 117 (575)
Q Consensus 40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 117 (575)
..+++|.|+..|+.+.++.+++. +.+ ++.+|.+|+||||+|+..|+.+++++|++.|+..++..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~--~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSAR--LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHH--HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHH--HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 34566666666777766666665 333 66666677777777777777777777777666223666666777777666
Q ss_pred -----HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcc
Q 037778 118 -----SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSH 192 (575)
Q Consensus 118 -----~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~ 192 (575)
..++.+++++|++. +...+..|..|.||||+|+..|+
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~tpLh~A~~~g~---- 195 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRL----------------------------------GNINAKASQAGQTALMLAVSHGR---- 195 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHH----------------------------------SCTTCCCTTTCCCHHHHHHHTTC----
T ss_pred HHHhhhhhhHHHHHHHHHc----------------------------------CCCccccCCCCCCHHHHHHHcCC----
Confidence 33444444444444 45555666777777777777773
Q ss_pred cchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHH-HCCCccccccC
Q 037778 193 FTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIR-EYPDLIWNIDE 271 (575)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~-~~~d~~~~~d~ 271 (575)
.+++++|++.|++++..+ ..|.||||+|+..|+.++++.|++ .+++ ++.+|.
T Consensus 196 ----------------------~~~v~~Ll~~gad~n~~d----~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~ 248 (276)
T 4hbd_A 196 ----------------------VDVVKALLACEADVNVQD----DDGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDR 248 (276)
T ss_dssp ----------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCT
T ss_pred ----------------------HHHHHHHHhCCCCCCCCC----CCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCC
Confidence 677777777777776655 344588888888889999999999 7888 788999
Q ss_pred CCCchHHHHHHcCChhHHHHHHhcC
Q 037778 272 NGYTIFHTAVLHRRKRIFKLIYQIG 296 (575)
Q Consensus 272 ~G~t~Lh~A~~~~~~~iv~~Ll~~~ 296 (575)
+|+||||+|+.+|+.+++++|++++
T Consensus 249 ~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 249 DGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999999999875
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.9e-27 Score=216.17 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=129.6
Q ss_pred CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778 40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL 119 (575)
Q Consensus 40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 119 (575)
+.||||.|+..|+.++++.|++.. +..++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence 467899999999999999988883 3348888888889999999889999999998888886 78888888888888888
Q ss_pred CChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhh
Q 037778 120 GHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQR 199 (575)
Q Consensus 120 g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~ 199 (575)
|+.+++++|++.++ +++.+|.+|.
T Consensus 80 ~~~~~v~~Ll~~g~----------------------------------~~~~~~~~g~---------------------- 103 (172)
T 3v30_A 80 GYTDIVGLLLERDV----------------------------------DINIYDWNGG---------------------- 103 (172)
T ss_dssp TCHHHHHHHHTTTC----------------------------------CTTCCCTTSC----------------------
T ss_pred CCHHHHHHHHHcCC----------------------------------CCCCCCCCCC----------------------
Confidence 88888888887644 2334444444
Q ss_pred hhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHH
Q 037778 200 GFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHT 279 (575)
Q Consensus 200 ~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~ 279 (575)
||||.|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 104 -----------------------------------------t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~ 141 (172)
T 3v30_A 104 -----------------------------------------TPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDL 141 (172)
T ss_dssp -----------------------------------------CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred -----------------------------------------CHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence 555555556678888888888888 78888999999999
Q ss_pred HHHcCChhHHHHHHhcCcchhhhhhcccCCCCcH
Q 037778 280 AVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNI 313 (575)
Q Consensus 280 A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~ 313 (575)
|+.+++.+++++|++++++... ++..|.||
T Consensus 142 A~~~~~~~~~~~L~~~~~~~~~----~~~~~~~p 171 (172)
T 3v30_A 142 AVALGYRKVQQVIENHILKLFQ----SNLVPADP 171 (172)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSC----C-------
T ss_pred HHHhCcHHHHHHHHHHHHHHhc----ccCCCCCC
Confidence 9999999999999998887643 77788776
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=5.1e-28 Score=237.67 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=173.7
Q ss_pred cchHHHHHHHcCCHHHHHHHHhhCC-CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCC-CccccccCCChHHHHH
Q 037778 5 RRLKLYRAALTGDWAVARGIYDVHE-GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFA 82 (575)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~lL~~~~-~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~-~l~~~d~~g~TpLh~A 82 (575)
..+++|.|+..|+.+.++.+++... ..++.+ |.+|+||||+|+..|+.++|++|++. |. +++.+|..|.||||+|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTCCCTTSCCHHHHG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCCCCCCCCCHHHHH
Confidence 4678899999999999999887522 236666 99999999999999999999999999 66 8999999999999999
Q ss_pred H-----HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHH
Q 037778 83 A-----ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDV 156 (575)
Q Consensus 83 a-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~ 156 (575)
+ ..++.++++.|++.+... +..+..|.||||+|+..|+.+++++|++.++ .+..|.+|.||||+|+..|+.++
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 9 678999999999999875 8889999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh
Q 037778 157 ALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV 225 (575)
Q Consensus 157 ~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~ 225 (575)
++.|++. .+.+++.+|.+|.||||+|+..|+ .+++++|++++
T Consensus 232 v~~Ll~~-~gad~~~~d~~g~TpL~~A~~~g~--------------------------~~iv~~Ll~~~ 273 (276)
T 4hbd_A 232 AGLLLAV-PSCDISLTDRDGSTALMVALDAGQ--------------------------SEIASMLYSRM 273 (276)
T ss_dssp HHHHHTS-TTCCTTCCCTTSCCHHHHHHHHTC--------------------------HHHHHHHHHHC
T ss_pred HHHHHhc-CCCCCcCcCCCCCCHHHHHHHcCC--------------------------HHHHHHHHhcc
Confidence 9999995 599999999999999999999994 78999998764
No 61
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.6e-29 Score=241.07 Aligned_cols=203 Identities=16% Similarity=0.121 Sum_probs=150.4
Q ss_pred HHHHhhCCCcccc--cCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCc
Q 037778 22 RGIYDVHEGEIRA--PISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNK 99 (575)
Q Consensus 22 ~~lL~~~~~~~~~--~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~ 99 (575)
+.+|++ +.+.+. ..+.++.||||.|+..|+.++|++|++. |.+++.+|..|.||||+|+..|+.+++++|++.|+
T Consensus 2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga 78 (229)
T 2vge_A 2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 455654 333332 2256678899999999999999999998 88999999999999999999999999999999999
Q ss_pred cccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhcccccccc-CCCCc
Q 037778 100 AIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRA-ANEET 178 (575)
Q Consensus 100 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d-~~g~t 178 (575)
++ +.+|..|.||||+|+..|+.+++++|++.++ +++.++ .+|.|
T Consensus 79 ~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga----------------------------------~~~~~~~~~g~t 123 (229)
T 2vge_A 79 NV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA----------------------------------AIFATTLSDGAT 123 (229)
T ss_dssp CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----------------------------------CTTCCCSSTTCC
T ss_pred CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----------------------------------CcccccCCCCCC
Confidence 86 8889999999999999999999999888755 333443 46666
Q ss_pred HHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHH
Q 037778 179 ALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLIL 258 (575)
Q Consensus 179 pLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~L 258 (575)
|||+|+. +..|+.+++++|
T Consensus 124 pL~~A~a-------------------------------------------------------------~~~~~~~~v~~L 142 (229)
T 2vge_A 124 AFEKCDP-------------------------------------------------------------YREGYADCATYL 142 (229)
T ss_dssp TGGGCCT-------------------------------------------------------------TSTTHHHHHHHH
T ss_pred HHHHHHH-------------------------------------------------------------HhcChHHHHHHH
Confidence 6666610 233455666666
Q ss_pred HHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778 259 IREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329 (575)
Q Consensus 259 l~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l 329 (575)
+++|++ ++..|..|.|++|.++..+. .++|++.|++.++ +.+|.+|+||||+|+..|+.++++..
T Consensus 143 l~~ga~-~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~--~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 143 ADVEQS-MGLMNSGAVYALWDYSAEFG---DELSFREGESVTV--LRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp HHHHHH-TTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEE--EESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred HHcCCC-cccccCCchHHHHHHhhccc---cccCccccccccc--cccCCCcccHHHHHHHcCCcceeehh
Confidence 666666 56667777788775544433 3567888888655 66999999999999999998877653
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=2.2e-27 Score=219.88 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=131.0
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+..|+||||.|+..|+.++++.|++. +.+++.. |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence 56788888888888888888888875 6677766 77888888888888888888888888 78888888888888888
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV 160 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L 160 (575)
|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||+|+|+..++.+++++|
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence 88888888888888888886 7788888888888888888888888888887 777788888888888888888888888
Q ss_pred HHh
Q 037778 161 FED 163 (575)
Q Consensus 161 l~~ 163 (575)
++.
T Consensus 187 l~~ 189 (192)
T 2rfm_A 187 TEV 189 (192)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=4.6e-27 Score=213.04 Aligned_cols=157 Identities=22% Similarity=0.225 Sum_probs=147.9
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
...+.++||.|+..|+.++++.|++ .+.+++.+ |.+|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRL 86 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHH
Confidence 4567899999999999999999998 48888887 89999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV 160 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L 160 (575)
|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..++.+++++|
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 99999999999999999997 8899999999999999999999999999998 788899999999999999999999999
Q ss_pred HHh
Q 037778 161 FED 163 (575)
Q Consensus 161 l~~ 163 (575)
++.
T Consensus 166 ~~~ 168 (169)
T 2y1l_E 166 QKL 168 (169)
T ss_dssp HTC
T ss_pred HHc
Confidence 874
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=3.8e-27 Score=218.29 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=154.0
Q ss_pred cccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCC
Q 037778 31 EIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRV 110 (575)
Q Consensus 31 ~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~ 110 (575)
.++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.
T Consensus 27 ~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 102 (192)
T 2rfm_A 27 LRNYR-DSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGK 102 (192)
T ss_dssp HHTCC-CTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSC
T ss_pred HHhCc-CCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCC
Confidence 34555 89999999999999999999999999 8999999999999999999999999999999999996 89999999
Q ss_pred cHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCC
Q 037778 111 LPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLN 189 (575)
Q Consensus 111 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~ 189 (575)
||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|++. +.+++.+|..|.||||+|+..++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~- 179 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--GADISARDLTGLTAEASARIFGR- 179 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTC-
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhCc-
Confidence 99999999999999999999999 888999999999999999999999999997 89999999999999999999994
Q ss_pred CcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh
Q 037778 190 YSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV 225 (575)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~ 225 (575)
.+++++|++.+
T Consensus 180 -------------------------~~~v~~Ll~~~ 190 (192)
T 2rfm_A 180 -------------------------QEVIKIFTEVR 190 (192)
T ss_dssp -------------------------HHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHhcc
Confidence 78999998876
No 65
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=5.1e-27 Score=209.58 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=145.8
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
++.||||.|+..|+.+.++.+++..+.+++.. |..|.||||+ +..|+.+++++|++. |.+++.+|..|.||||+|+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAA 76 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH
Confidence 46799999999999999999999755688877 8999999999 999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFE 162 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~ 162 (575)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. + .+..+.+|.||||+|+..++.++++.|++
T Consensus 77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 999999999999999996 89999999999999999999999999999 6 78889999999999999999999999987
Q ss_pred h
Q 037778 163 D 163 (575)
Q Consensus 163 ~ 163 (575)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 5
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=4.7e-27 Score=211.18 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=146.2
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
...||||.|+..|+.+.++.+++ .+.+++.+ |..|.||||+|+. |+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence 46799999999999999999998 57888887 9999999999999 999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||||+|+..++.+++++|+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999999999996 8999999999999999999999999999998 4788999999999999999999999999
Q ss_pred Hh
Q 037778 162 ED 163 (575)
Q Consensus 162 ~~ 163 (575)
++
T Consensus 158 ~~ 159 (162)
T 1ihb_A 158 AN 159 (162)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=3.7e-27 Score=215.77 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=155.1
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA 82 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A 82 (575)
.++.++||.|+..|+.+.++.+++..+.+++.. |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHH
Confidence 467899999999999999999999878888887 99999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||++.|+..++.++++.|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 8999999999999999999999999999999 8889999999999999999999999999
Q ss_pred HhhhccccccccCCC
Q 037778 162 EDLHEKSAIGRAANE 176 (575)
Q Consensus 162 ~~~~~~~~~~~d~~g 176 (575)
+. +.+++..+..+
T Consensus 159 ~~--g~~~~~~~~~~ 171 (179)
T 3f6q_A 159 KM--GQNLNRIPYKD 171 (179)
T ss_dssp HT--TCCCSCBCCCC
T ss_pred Hh--hcCcccCCccc
Confidence 97 77777665543
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.3e-26 Score=209.47 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=151.6
Q ss_pred CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778 39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS 118 (575)
Q Consensus 39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 118 (575)
.|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 578999999999999999999999 8999999999999999999999999999999999996 8899999999999999
Q ss_pred cCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhh
Q 037778 119 LGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQY 197 (575)
Q Consensus 119 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~ 197 (575)
.|+.+++++|++.++ .+..+.+|.||||.|+..++.++++.|++. +.+++.+|.+|.||||+|+..++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~--------- 147 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALGY--------- 147 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTC---------
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCc---------
Confidence 999999999999998 888899999999999999999999999997 89999999999999999999994
Q ss_pred hhhhccchhhhHhhHHHHHHHHHHHHHhhhCC
Q 037778 198 QRGFFSAKDIENKRQKALKLVQRLWEKVVLLS 229 (575)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~ 229 (575)
.+++++|++++.+..
T Consensus 148 -----------------~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 148 -----------------RSVQQVIESHLLKLL 162 (167)
T ss_dssp -----------------HHHHHHHHHHHHHHC
T ss_pred -----------------HHHHHHHHHHHHHHH
Confidence 789999999887654
No 69
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=3.3e-27 Score=212.95 Aligned_cols=157 Identities=22% Similarity=0.246 Sum_probs=147.6
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+.++.|+||.|+..|+.+.++.+++..+.+++.. +..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHN 81 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHHH
Confidence 5678999999999999999999999777777776 88899999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV 160 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L 160 (575)
|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||+|+|.. ++.+++++|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence 99999999999999999997 8999999999999999999999999999999 88899999999999877 888999999
Q ss_pred HHh
Q 037778 161 FED 163 (575)
Q Consensus 161 l~~ 163 (575)
++.
T Consensus 160 ~~~ 162 (165)
T 3twr_A 160 RGD 162 (165)
T ss_dssp HTC
T ss_pred hhc
Confidence 876
No 70
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.3e-28 Score=250.95 Aligned_cols=266 Identities=12% Similarity=0.035 Sum_probs=175.2
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcc--cccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCC---ccccccCCChH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEI--RAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGD---LAQENNVGYTA 78 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~--~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~---l~~~d~~g~Tp 78 (575)
++.||||.||..|+.++++.|++. +... ....+..|.||||+|++.|+.++|++|+++ |++ .+..+.+ .||
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YHA 166 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CCH
Confidence 457999999999999999999985 4311 111255688999999999999999999999 654 2333333 999
Q ss_pred HHHHHHcCCHHHHHHHHhcCcccccc--CCCCCCcHHHHHH-HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHH
Q 037778 79 LFFAAASGMVELAREIMTHNKAIATE--QDDKRVLPIDLAA-SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYD 155 (575)
Q Consensus 79 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~ 155 (575)
||+|+..|+.++|++|+++|+++ +. .|..|.||||+|+ ..|+.++|++|++.++ .|.||||.|+..|+.+
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCHH
Confidence 99999999999999999999986 55 7888999999999 9999999999999654 4899999999999999
Q ss_pred HHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh------hhhhhccchhhhHhhHHHHHHHHHHHHHhh-hC
Q 037778 156 VALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ------YQRGFFSAKDIENKRQKALKLVQRLWEKVV-LL 228 (575)
Q Consensus 156 ~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~-~~ 228 (575)
++++|++. +...+.++ ++++.|+..|+........ ..+.+....+ ....+.+++|++.+. ..
T Consensus 240 vv~lL~~~--ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~-----~~~~~~~~~Ll~~~~vk~ 308 (376)
T 2aja_A 240 VNPFIARH--VNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND-----EVLLDDIRFLLSIPGIKA 308 (376)
T ss_dssp HHHHHHHH--HHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC-----GGGHHHHHHHHTSTTTGG
T ss_pred HHHHHHhc--Cccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch-----hhHHHHHHHHHhChhhhh
Confidence 99999987 66665554 3677777776422110000 0011111000 012445566654321 00
Q ss_pred ChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhc
Q 037778 229 SDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI 295 (575)
Q Consensus 229 ~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 295 (575)
......+.+.+.+|||+|+..|+.++++.|++. ...+|..|+|++.+|-.+|+.++.+.-+.+
T Consensus 309 l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 309 LAPTATIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp GSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC----------------------
T ss_pred hhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhccccccccccccHHHHHHHH
Confidence 000000122334999999999999999999975 356888999999999999999998876543
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.5e-26 Score=204.49 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=140.9
Q ss_pred cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778 5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA 84 (575)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~ 84 (575)
..++||.|+..|+.+.++.+++. +.+++ .+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN-GAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH-TCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc-CCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHH
Confidence 56899999999999999999996 55554 388899999999999999999999998 89999999999999999999
Q ss_pred cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778 85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV 160 (575)
Q Consensus 85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L 160 (575)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||+|+|+..++.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999997 8999999999999999999999999999998 788899999999999999999999876
No 72
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.2e-26 Score=208.57 Aligned_cols=159 Identities=18% Similarity=0.109 Sum_probs=146.4
Q ss_pred CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778 38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA 117 (575)
Q Consensus 38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 117 (575)
....||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+. |+.+++++|++.++++ +.+|..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 4568999999999999999999998 89999999999999999999 9999999999999996 889999999999999
Q ss_pred HcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh
Q 037778 118 SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ 196 (575)
Q Consensus 118 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~ 196 (575)
..|+.+++++|++.++ .+..+.+|.||||+|+..++.+++++|++. ....++.+|..|.||||+|+..++
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~-------- 149 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGR-------- 149 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTC--------
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcCC--------
Confidence 9999999999999998 788999999999999999999999999998 444468999999999999999994
Q ss_pred hhhhhccchhhhHhhHHHHHHHHHHHHHhhh
Q 037778 197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVL 227 (575)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~ 227 (575)
.+++++|+++|++
T Consensus 150 ------------------~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 150 ------------------NEVVSLMQANGAG 162 (162)
T ss_dssp ------------------HHHHHHHHHTC--
T ss_pred ------------------HHHHHHHHHhCCC
Confidence 7899999988764
No 73
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=3.8e-26 Score=206.93 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=139.7
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
...+.||||.|++.|+.++|++|++. +.+++.+|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence 56678999999999999999999999 8999999999999999999999999999999999996 88999999999999
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL 188 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~ 188 (575)
+..|+.+++++|++.++ .+..+.+|.||||.|+..++.+++++|+++ +.+++.+|.+|.||||+|+..++
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhCC
Confidence 99999999999999998 788899999999999999999999999998 88999999999999999999994
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=6.8e-27 Score=224.57 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=131.3
Q ss_pred CCcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH
Q 037778 1 PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF 80 (575)
Q Consensus 1 p~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh 80 (575)
|...|.||||.|+..|+.+.++.+++ ++.+++. ++.|.||||.|+..|+.++|++|++. +.+++.+|..|.||||
T Consensus 1 p~~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~ 75 (239)
T 1ycs_B 1 PEITGQVSLPPGKRTNLRKTGSERIA-HGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALH 75 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHH
T ss_pred CCccccccCchhhhhhhHHHHHHHhc-cCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHH
Confidence 67789999999999999999999988 5888874 57899999999999999999999999 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchh-hHHHHH--HHhCcHHH
Q 037778 81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRS-HLLVTL--IQTDLYDV 156 (575)
Q Consensus 81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~-t~L~~a--~~~~~~~~ 156 (575)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|. ||||.| +..|+.++
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~ 154 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHH
Confidence 999999999999999999997 9999999999999999999999999999999 666666665 999999 78899999
Q ss_pred HHHHHHhhhccccccc---------cCCCCcHHHHHHhcCC
Q 037778 157 ALRVFEDLHEKSAIGR---------AANEETALHALARKNL 188 (575)
Q Consensus 157 ~~~Ll~~~~~~~~~~~---------d~~g~tpLh~a~~~~~ 188 (575)
++.|++. ++..+.. +..+.++++++.+.|.
T Consensus 155 ~~~Ll~~--~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 155 SQFLYGV--QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHH--HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHh--hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999997 6655544 6678888888888774
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=6.4e-26 Score=207.50 Aligned_cols=166 Identities=17% Similarity=0.093 Sum_probs=151.8
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
++++.+|||.|+..|+.+++++|++.. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA 79 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 356789999999999999999999986 7789999999999999999999999999999999997 88999999999999
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK 195 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~ 195 (575)
+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|++. +.+++.+|.+|.||||+|+..+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~-------- 149 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKAPL-------- 149 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSSBCCTTSCCGGGGSCHHH--------
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcchhccCCCCcHHHHHHHH--------
Confidence 99999999999999999 888999999999999999999999999997 8999999999999999999877
Q ss_pred hhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778 196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR 232 (575)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~ 232 (575)
..++++.|++.|++++...
T Consensus 150 ------------------~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 150 ------------------RELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp ------------------HHHHHHHHHHTTCCCSCBC
T ss_pred ------------------HHHHHHHHHHhhcCcccCC
Confidence 4788999999998887654
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=8e-28 Score=229.24 Aligned_cols=177 Identities=21% Similarity=0.195 Sum_probs=157.3
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
...+.||||.|+..|+.++++.|++. +.+++.+ |.+|.||||+|+..|+.+++++|++. |++++.+|..|+||||+
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~ 93 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHC 93 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 34678999999999999999999985 7889887 99999999999999999999999999 99999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCC-CCCCcHHHHH--HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQD-DKRVLPIDLA--ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVA 157 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~ 157 (575)
|+..|+.+++++|++.|+++ +..+ ..|.||||+| +..|+.+++++|++.++ .+..+..+.++++.+...+..
T Consensus 94 A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--- 169 (229)
T 2vge_A 94 AASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD--- 169 (229)
T ss_dssp HHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---
T ss_pred HHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---
Confidence 99999999999999999997 6664 6999999999 99999999999999999 788888999998865544332
Q ss_pred HHHHHhhhccc--cccccCCCCcHHHHHHhcCC
Q 037778 158 LRVFEDLHEKS--AIGRAANEETALHALARKNL 188 (575)
Q Consensus 158 ~~Ll~~~~~~~--~~~~d~~g~tpLh~a~~~~~ 188 (575)
+.+++. +.. ++.+|.+|+||||+|+..|+
T Consensus 170 ~~ll~~--ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 170 ELSFRE--GESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp BCCBCT--TCEEEEEESSCTTCSSEEEEEETTE
T ss_pred ccCccc--cccccccccCCCcccHHHHHHHcCC
Confidence 344554 555 67889999999999999985
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=4.5e-26 Score=205.50 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=146.4
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
|++|.||||.|++.|+.++++.|++.. +.+++..+..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 677899999999999999999999974 7788889999999999999999999999999999996 89999999999999
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK 195 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~ 195 (575)
+..|+.+++++|++.++ .+..+..|.||||+|+..++.++++.|++. +.+++.+|.+|.||||+|++ ++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~a~~-~~------- 152 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKD-GD------- 152 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTGGGSCT-TC-------
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCChhHhHhc-CC-------
Confidence 99999999999999999 888999999999999999999999999997 89999999999999999877 52
Q ss_pred hhhhhhccchhhhHhhHHHHHHHHHHHHHhh
Q 037778 196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVV 226 (575)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~ 226 (575)
.+++++|.+.|+
T Consensus 153 -------------------~~i~~~L~~~gA 164 (165)
T 3twr_A 153 -------------------TDIQDLLRGDAA 164 (165)
T ss_dssp -------------------HHHHHHHHTC--
T ss_pred -------------------hHHHHHHhhccc
Confidence 688888887654
No 78
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=2.6e-25 Score=197.82 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=135.7
Q ss_pred CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778 40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL 119 (575)
Q Consensus 40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 119 (575)
..||||.|++.|+.+++++|++. +.+++ .|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 46899999999999999999999 77776 5889999999999999999999999999996 88999999999999999
Q ss_pred CChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778 120 GHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL 188 (575)
Q Consensus 120 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~ 188 (575)
|+.+++++|++.++ .+..+.+|.||||+|+..++.+++++|++. +.+++.+|.+|.||||+|+..++
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999998 788899999999999999999999999997 89999999999999999999994
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=3.1e-26 Score=219.93 Aligned_cols=183 Identities=12% Similarity=0.098 Sum_probs=116.4
Q ss_pred CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778 38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA 117 (575)
Q Consensus 38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 117 (575)
..|.||||.|++.|+.+.++.|+++ |.+++. +..|.||||.|+..|+.++++.|++.++++ +.+|..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 4578888888888888888888888 777775 367788888888888888888888888875 778888888888888
Q ss_pred HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhh
Q 037778 118 SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQY 197 (575)
Q Consensus 118 ~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~ 197 (575)
..|+.+++++|++.++ +++.+|.+|+
T Consensus 79 ~~g~~~~v~~Ll~~ga----------------------------------~~~~~d~~g~-------------------- 104 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGV----------------------------------NVNAADSDGW-------------------- 104 (239)
T ss_dssp HHTCHHHHHHHHHHTC----------------------------------CTTCCCTTCC--------------------
T ss_pred HcCCHHHHHHHHHcCC----------------------------------CCCccCCCCC--------------------
Confidence 8888888887777543 3444555555
Q ss_pred hhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCC-ch
Q 037778 198 QRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGY-TI 276 (575)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~-t~ 276 (575)
||||+|+..|+.+++++|+++|++ ++..|..|. ||
T Consensus 105 -------------------------------------------tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~ 140 (239)
T 1ycs_B 105 -------------------------------------------TPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTA 140 (239)
T ss_dssp -------------------------------------------CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCH
T ss_pred -------------------------------------------CHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcch
Confidence 455555555678889999999988 677777766 99
Q ss_pred HHHH--HHcCChhHHHHHHhcCcchhhhh-----hcccCCCCcHHHHHhhCCC
Q 037778 277 FHTA--VLHRRKRIFKLIYQIGAAKDLIL-----KFEDPKKNNILHLAAMLPP 322 (575)
Q Consensus 277 Lh~A--~~~~~~~iv~~Ll~~~~~~~~l~-----~~~d~~G~T~LHlAa~~~~ 322 (575)
||+| +.+|+.+++++|+++|++.+... ...|..|.|++|++.+.|.
T Consensus 141 l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 141 ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999 78899999999999998876531 1138889999999999886
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=7.1e-25 Score=195.59 Aligned_cols=143 Identities=21% Similarity=0.144 Sum_probs=135.2
Q ss_pred CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778 40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL 119 (575)
Q Consensus 40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 119 (575)
+.||||.|+..|+.++++.|++.. +.+++.+|..|.||||+ +..|+.++++.|++.|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 579999999999999999999983 77899999999999999 9999999999999999996 89999999999999999
Q ss_pred CChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778 120 GHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL 188 (575)
Q Consensus 120 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~ 188 (575)
|+.+++++|++.++ .+..+.+|.||||.|+..++.+++++|++. .+++.+|.+|.||||+|+..++
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGA 145 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCC
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCc
Confidence 99999999999998 788899999999999999999999999974 6778899999999999999994
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=6.7e-25 Score=201.61 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=138.9
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCH----HHHHHHHHcCCCCCccccccCCChH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQY----GFVKELVQRMEPGDLAQENNVGYTA 78 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~l~~~d~~g~Tp 78 (575)
.+++++||.||+.|+.+.++.++... ++...+..|+||||+|+..|+. +++++|+++ |++++.+|.+|+||
T Consensus 4 ~~~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 4 MSEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTL 78 (186)
T ss_dssp HHHCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCT
T ss_pred cccccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcH
Confidence 35789999999999999999998864 3333236799999999999985 599999999 99999999999999
Q ss_pred HHHHHHcCC------HHHHHHHHhcCccccccCCCCCC-cHHHHHHHcC-----ChHHHHHHHh-ccc-cccCcCchhhH
Q 037778 79 LFFAAASGM------VELAREIMTHNKAIATEQDDKRV-LPIDLAASLG-----HEDMVVYLYG-QTK-NSLNDEDRSHL 144 (575)
Q Consensus 79 Lh~Aa~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~~~-~~~~~~~g~t~ 144 (575)
||+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+ +.+++++|++ .++ .+..|..|.||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence 999999887 68999999999997 99999999 9999999955 3569999999 888 88999999999
Q ss_pred HHHHHHhCcHHHHHHHHHh
Q 037778 145 LVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 145 L~~a~~~~~~~~~~~Ll~~ 163 (575)
||+|.+.++.++++.|++.
T Consensus 158 L~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999876
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=3e-24 Score=186.90 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=73.9
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccC-CChHHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNV-GYTALFF 81 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~-g~TpLh~ 81 (575)
..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+. |+.+++++|+++ +.+++.+|.. |+||||+
T Consensus 10 ~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~ 84 (136)
T 1d9s_A 10 GSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVHD 84 (136)
T ss_dssp CCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHHH
T ss_pred CCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHHH
Confidence 4555666666666666666655553 5555554 5556666666666 666666666665 5566666655 5666666
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT 132 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 132 (575)
|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|+++|
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 85 AAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 66666666666666666554 555556666666666666666666665554
No 83
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=7.1e-24 Score=184.55 Aligned_cols=126 Identities=24% Similarity=0.288 Sum_probs=111.5
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
-..+.||||+|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHL 86 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence 35678999999999999999988884 7888877 88899999999999999999999998 88999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT 132 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 132 (575)
|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999886 888899999999999999999999998764
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=3.5e-24 Score=191.24 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=80.4
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCCh-HHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYT-ALFF 81 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~T-pLh~ 81 (575)
..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+ .|+.+++++|+++ +.+++.+|..|.| |||+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHD 84 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHH
Confidence 3456666666666666666666653 5566655 666666666663 6666666666666 6666666666666 6666
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLV 146 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~ 146 (575)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.|+.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 66666666666666666664 6666666666666666666666666666655 4444455544443
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=1.2e-23 Score=183.21 Aligned_cols=130 Identities=20% Similarity=0.143 Sum_probs=123.7
Q ss_pred CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCC
Q 037778 29 EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDK 108 (575)
Q Consensus 29 ~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 108 (575)
+.+++.. +..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+. |+.+++++|+++++++ +.+|..
T Consensus 2 ~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~ 76 (136)
T 1d9s_A 2 SPGIHML-GGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPA 76 (136)
T ss_dssp CCCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTT
T ss_pred CCCccCC-CCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCC
Confidence 3567776 89999999999999999999999999 89999999999999999999 9999999999999996 889999
Q ss_pred -CCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778 109 -RVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 109 -g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 163 (575)
|.||||+|+..|+.+++++|++.++ .+..+..|.||||+|+..++.+++++|+++
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999 888999999999999999999999999987
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=6.9e-24 Score=189.31 Aligned_cols=142 Identities=18% Similarity=0.101 Sum_probs=118.7
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCc-HHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVL-PIDL 115 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~ 115 (575)
+..|.||||+|+..|+.++|++|+++ +.+++.+|..|+||||+|+ .|+.+++++|++.|+++ +.+|..|.| |||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 67899999999999999999999999 8999999999999999985 99999999999999997 899999999 9999
Q ss_pred HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHH
Q 037778 116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALA 184 (575)
Q Consensus 116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~ 184 (575)
|+..|+.+++++|+++++ .+..+..|.||||+|+..++.+++++|+++ +.+++.++..|.||.+.+.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA--AGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC--C------------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc--CCCCCccCcCcCcccccCC
Confidence 999999999999999999 888999999999999999999999999997 9999999999999988553
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=7.4e-23 Score=175.04 Aligned_cols=125 Identities=26% Similarity=0.378 Sum_probs=114.6
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
+|+||||.|+..|+.++++.+++. +.+++.. +..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence 488999999999999999999885 7778876 88999999999999999999999998 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK 133 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 133 (575)
..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999999986 8889999999999999999999999998875
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=5.5e-23 Score=188.77 Aligned_cols=160 Identities=8% Similarity=0.021 Sum_probs=139.5
Q ss_pred CChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHHHHHcCCH----HHHHHHHhcCccccccCCCCCCcHHH
Q 037778 40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFFAAASGMV----ELAREIMTHNKAIATEQDDKRVLPID 114 (575)
Q Consensus 40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~ 114 (575)
+.++||.|++.|+.+.++.+++. + ++.++ ..|+||||+|+.+|+. +++++|+++|+++ +.+|..|.||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 46889999999999999999987 3 44555 7899999999999975 5999999999997 999999999999
Q ss_pred HHHHcCC------hHHHHHHHhccc-cccCcCchh-hHHHHHHHh-----CcHHHHHHHHHhhhccccccccCCCCcHHH
Q 037778 115 LAASLGH------EDMVVYLYGQTK-NSLNDEDRS-HLLVTLIQT-----DLYDVALRVFEDLHEKSAIGRAANEETALH 181 (575)
Q Consensus 115 ~A~~~g~------~~~v~~Ll~~~~-~~~~~~~g~-t~L~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh 181 (575)
+|+..|+ .+++++|+++|+ .+..|..|. ||||+|+.. +..++++.|++. .+.+++.+|..|.||||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~-~gad~~~~d~~G~TpL~ 159 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ-SGLQLLIKDKWGLTALE 159 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS-TTCCTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh-cCCCCcccCCCCCCHHH
Confidence 9999987 578999999999 888999999 999999984 446799999994 49999999999999999
Q ss_pred HHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChh
Q 037778 182 ALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDS 231 (575)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~ 231 (575)
+|++.++ .+++++|.+...+.+.+
T Consensus 160 ~A~~~~~--------------------------~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 160 FVKRCQK--------------------------PIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHTTTC--------------------------HHHHHHHHHHHHHHTCC
T ss_pred HHHHcCC--------------------------HHHHHHHHHHHHHHhcc
Confidence 9999984 67888887776655544
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=2.1e-22 Score=175.14 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=118.3
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
...+.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 56789999999999999999999999 8999999999999999999999999999999999996 88999999999999
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 163 (575)
+..|+.+++++|++.++ .+..|.+|.||||+|+..++.++++.|++.
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999999998 788899999999999999999999999875
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.6e-22 Score=185.58 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=127.3
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFF 81 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~ 81 (575)
.+|.||||.|+..|+.+.++.+++ +.+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+| ..|+||||+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHH
Confidence 478899999999999999999998 7788887 99999999999999999999999999 89999998 889999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++. ..+.+++++++..+..++++.|.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999997 89999999999999875432 34568999999999999999987
Q ss_pred Hh
Q 037778 162 ED 163 (575)
Q Consensus 162 ~~ 163 (575)
++
T Consensus 180 ~~ 181 (183)
T 3deo_A 180 GQ 181 (183)
T ss_dssp TC
T ss_pred Hh
Confidence 64
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=6.7e-22 Score=169.04 Aligned_cols=122 Identities=24% Similarity=0.334 Sum_probs=117.7
Q ss_pred CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778 39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS 118 (575)
Q Consensus 39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 118 (575)
+|+||||+|++.|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence 589999999999999999999999 8999999999999999999999999999999999996 8899999999999999
Q ss_pred cCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778 119 LGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 119 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 163 (575)
.|+.+++++|++.++ .+..+..|.||||+|+..++.+++++|+++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 999999999999998 788899999999999999999999999987
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=5.7e-23 Score=178.99 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=93.1
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+..|+||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|+||||+
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHH
Confidence 4567777888777777777777776 46677766 77777788888777777777777777 77777777777788888
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT 132 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 132 (575)
|+..|+.+++++|++.|+++ +.+|..|.||||+|+..+..+++++|.+..
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 77777777777777777775 777777777877777777777776665543
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.6e-22 Score=193.07 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=128.7
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFF 81 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~ 81 (575)
.+|.||||.|+..|+.++++.|++ +.+++.+ |..|.||||+|+..|+.++|++|+++ |++++.+| ..|.||||+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHH
Confidence 468999999999999999999998 7788887 99999999999999999999999999 99999998 889999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++ ...+.+|||+|+..|+.++++.|+
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~----------------~~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK----------------TTPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT----------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh----------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence 99999999999999999997 8999999999999986332 256789999999999999999999
Q ss_pred Hh
Q 037778 162 ED 163 (575)
Q Consensus 162 ~~ 163 (575)
+.
T Consensus 181 ~~ 182 (244)
T 3ui2_A 181 GQ 182 (244)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=5e-22 Score=169.53 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=87.4
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
.|.||||.|+..|+.+.++.+++ .+.+++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAV 81 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHH
Confidence 56788888888888888887777 46677776 77788888888888888888888877 7888888888888888888
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS 118 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 118 (575)
..|+.+++++|+++|+++ +.+|..|.||||+|..
T Consensus 82 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCC
T ss_pred HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCC
Confidence 888888888888888875 7788888888888743
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=8e-23 Score=187.57 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=90.8
Q ss_pred CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCcHHHHHH
Q 037778 39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD-DKRVLPIDLAA 117 (575)
Q Consensus 39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~ 117 (575)
+|.||||+|+..|+.++++.|++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence 45666666666666666666665 3566666666666666666666666666666666664 4444 56666666666
Q ss_pred HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhh
Q 037778 118 SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQY 197 (575)
Q Consensus 118 ~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~ 197 (575)
..|+.+++++|+++ +.+++.+|.+|.||||+|++.++
T Consensus 119 ~~~~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~tpl~~A~~~~~--------- 155 (183)
T 3deo_A 119 GYVRPEVVEALVEL----------------------------------GADIEVEDERGLTALELAREILK--------- 155 (183)
T ss_dssp HTTCHHHHHHHHHH----------------------------------TCCTTCCCTTSCCHHHHHHHHHH---------
T ss_pred hcCcHHHHHHHHHc----------------------------------CCCCcCCCCCCCCHHHHHHHhcc---------
Confidence 66666666666654 55566778888888888876551
Q ss_pred hhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHH
Q 037778 198 QRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIRE 261 (575)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~ 261 (575)
.....+||+.|+..|+.++++.|.++
T Consensus 156 --------------------------------------~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 156 --------------------------------------TTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp --------------------------------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------------------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence 11223788888888888888887654
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=2.9e-22 Score=174.44 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=115.1
Q ss_pred CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778 36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL 115 (575)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 115 (575)
.|.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD 82 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence 388999999999999999999999999 8999999999999999999999999999999999996 8899999999999
Q ss_pred HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778 116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED 163 (575)
Q Consensus 116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 163 (575)
|+..|+.+++++|++.++ .+..+.+|.||+|+|+..+..++++.+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 999999999999999998 888899999999999988887777666554
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=194.76 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=101.5
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccc------cccCCChHHHHHHHc---CCHHHHHHHHhcCccccccCCC
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQ------ENNVGYTALFFAAAS---GMVELAREIMTHNKAIATEQDD 107 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~------~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~ 107 (575)
...+.++||.|+..|+.+.++.|++. +.+++. +|..|+||||+|+.. |+.+++++|++.|+++ +.+|.
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~ 224 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA 224 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCT
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCC
Confidence 34456778888888888888877777 677766 577778888888776 7778888888887775 77777
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778 108 KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK 186 (575)
Q Consensus 108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~ 186 (575)
.|.||||+|+..|+.+++++|++.++ .+..|.+|.||||+|+..++.+++++|++. +.+ .|.||||+|+..
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~--ga~------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA--QAG------TFAFPLHVDYSW 296 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--HHH------TTSSCCC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh--cCC------CCCChhHHHHhc
Confidence 78888888888888888888888777 667777788888888888888888877776 332 578888888877
Q ss_pred CC
Q 037778 187 NL 188 (575)
Q Consensus 187 ~~ 188 (575)
|+
T Consensus 297 g~ 298 (301)
T 2b0o_E 297 VI 298 (301)
T ss_dssp --
T ss_pred CC
Confidence 63
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=9.5e-23 Score=196.18 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=70.9
Q ss_pred CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCcHHHHH
Q 037778 38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD-DKRVLPIDLA 116 (575)
Q Consensus 38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A 116 (575)
.+|.||||+|++.|+.++++.|++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence 345666666666666666666665 3556666666666666666666666666666666664 4444 5566666666
Q ss_pred HHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcC
Q 037778 117 ASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~ 187 (575)
+..|+.+++++|+++ +.+++.+|.+|.||||+|+..+
T Consensus 119 ~~~g~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~t~l~~A~~~~ 155 (244)
T 3ui2_A 119 AGYVRPEVVEALVEL----------------------------------GADIEVEDERGLTALELAREIL 155 (244)
T ss_dssp HHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHC----------------------------------CCCCCCCCCCCCcHHHHHHHHH
Confidence 666666666655554 5566678888888888887654
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=8.3e-22 Score=186.72 Aligned_cols=126 Identities=21% Similarity=0.220 Sum_probs=85.8
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
.|.||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.++|++|++.. +.+++.+|..|+||||+|+
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHh-CCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHHHHH
Confidence 45677777777777777777766 46666665 667777777777777777777777664 5667777777777777777
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778 84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK 133 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 133 (575)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++++.|++.++
T Consensus 149 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 149 WKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 777777777777777775 6677777777777777777777777776665
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.8e-21 Score=166.01 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=103.6
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
+..|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 56789999999999999999999998 8999999999999999999999999999999999996 89999999999999
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL 153 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~ 153 (575)
+..|+.+++++|++.++ .+..+.+|.||+|+|...+.
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHH
Confidence 99999999999999988 77788888899888854433
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=2.8e-21 Score=183.10 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=114.3
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCcHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTH-NKAIATEQDDKRVLPIDL 115 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~ 115 (575)
+.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++. ++++ +.+|..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence 45689999999999999999999998 899999999999999999999999999999999 8886 8999999999999
Q ss_pred HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCC
Q 037778 116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANE 176 (575)
Q Consensus 116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g 176 (575)
|+..|+.+++++|++.++ .+..+.+|.||||+|+..+..++++.+++. +.....++.+|
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~--~~~~~~~~~~~ 206 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT--DAVRTLSNAED 206 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc--chhhhccchhh
Confidence 999999999999999999 888999999999999999999999999987 55555554443
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=185.78 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=123.2
Q ss_pred cchHHHHHHHcCCHHHHHHHHhhCCCccccc-----CCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccccccCCC
Q 037778 5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAP-----ISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQENNVGY 76 (575)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-----~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~~d~~g~ 76 (575)
+.++||.|+..|+.+.++.+++ .+.+++.. .+..|.||||+|+.. |+.+++++|++. |++++.+|.+|+
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCC
Confidence 3467999999999999999997 57787762 388999999999997 899999999999 899999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcH
Q 037778 77 TALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLY 154 (575)
Q Consensus 77 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~ 154 (575)
||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.++. .|.||||+|+..|+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence 9999999999999999999999997 99999999999999999999999999998872 578999999987753
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=5e-20 Score=148.61 Aligned_cols=92 Identities=27% Similarity=0.405 Sum_probs=67.9
Q ss_pred CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778 39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS 118 (575)
Q Consensus 39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 118 (575)
+|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 367777777777777777777777 6777777777777777777777777777777777775 6777777777777777
Q ss_pred cCChHHHHHHHhccc
Q 037778 119 LGHEDMVVYLYGQTK 133 (575)
Q Consensus 119 ~g~~~~v~~Ll~~~~ 133 (575)
.|+.+++++|++.|+
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 777777777777654
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=5.7e-20 Score=186.41 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=72.8
Q ss_pred chHHHHHHHc-CCHHHHHHHHhhCCCcccccCC--CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778 6 RLKLYRAALT-GDWAVARGIYDVHEGEIRAPIS--KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA 82 (575)
Q Consensus 6 ~t~L~~Aa~~-g~~~~v~~lL~~~~~~~~~~~~--~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A 82 (575)
.|+||.|+.. |+.+.++.|++ .+.+++.. + ..|.||||+|+..|+.++|++|+++ |++++.+|..|+||||+|
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALA-HGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLHHA 275 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHH-TTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred CcHHHHHHHccCCHHHHHHHHH-cCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence 3456666666 66666665555 35555554 3 5556666666666666666666665 566666666666666666
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778 83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK 133 (575)
Q Consensus 83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 133 (575)
+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+.
T Consensus 276 ~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 6666666666666666554 5556666666666666666666666655543
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=1e-19 Score=178.26 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=100.7
Q ss_pred chHHHHHHHcCCHHHHHHHHhhCCCccccc-----CCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccccccCCCh
Q 037778 6 RLKLYRAALTGDWAVARGIYDVHEGEIRAP-----ISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQENNVGYT 77 (575)
Q Consensus 6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-----~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~~d~~g~T 77 (575)
.++|+.|+..|+.+.++.+++. +.+++.. .+..|.||||+|+.. |+.+++++|+++ |++++.+|..|+|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g~T 207 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCC
T ss_pred hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCCCC
Confidence 4578888888888888887774 5553322 167788888888888 788888888888 7888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778 78 ALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK 133 (575)
Q Consensus 78 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 133 (575)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++
T Consensus 208 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 888888888888888888888886 8888888888888888888888888888776
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.4e-19 Score=144.58 Aligned_cols=93 Identities=26% Similarity=0.352 Sum_probs=87.2
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA 83 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa 83 (575)
+|+||||.|+..|+.++++.|++ .+.+++.+ |.+|.||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence 48999999999999999999988 58899988 99999999999999999999999999 9999999999999999999
Q ss_pred HcCCHHHHHHHHhcCcc
Q 037778 84 ASGMVELAREIMTHNKA 100 (575)
Q Consensus 84 ~~g~~~iv~~Ll~~~~~ 100 (575)
..|+.+++++|+++|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999999864
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=3.2e-19 Score=189.78 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=108.8
Q ss_pred chHHHHHHHcCCHHHHHHHHhhCCCccccc-----CCCCCChHHhHHHH---cCCHHHHHHHHHcCCCCCccccccCCCh
Q 037778 6 RLKLYRAALTGDWAVARGIYDVHEGEIRAP-----ISKRKDTALHIAAA---AKQYGFVKELVQRMEPGDLAQENNVGYT 77 (575)
Q Consensus 6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-----~~~~g~TpLh~Aa~---~g~~~~v~~Ll~~~~~~~l~~~d~~g~T 77 (575)
.+.||.|+..|+.+.++.+|+. +.+++.+ .|..|.||||+|++ .|+.++|++|+++ |++++.+|.+|+|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~T 209 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNT 209 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSCC
T ss_pred HHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCCc
Confidence 4679999999999999988884 6777643 26788999999966 8999999999998 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHH
Q 037778 78 ALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQ 150 (575)
Q Consensus 78 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~ 150 (575)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+. +|+|.+..
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 999999999999999999999996 8889999999999999999999999999888 222 56666543
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=6e-19 Score=172.75 Aligned_cols=191 Identities=17% Similarity=0.123 Sum_probs=142.3
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHH
Q 037778 71 ENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTL 148 (575)
Q Consensus 71 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a 148 (575)
.|..+.++++.+...|+..+.+++...-+.....+-..+.... .+...-..+++..... .........++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 4677889999999999988777765443321010111111111 1111112223333322 223344556789999
Q ss_pred HHhCcHHHHHHHHHhhhccc------cccccCCCCcHHHHHHhc---CCCCcccchhhhhhhccchhhhHhhHHHHHHHH
Q 037778 149 IQTDLYDVALRVFEDLHEKS------AIGRAANEETALHALARK---NLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQ 219 (575)
Q Consensus 149 ~~~~~~~~~~~Ll~~~~~~~------~~~~d~~g~tpLh~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~ 219 (575)
+..++.+.++.+++. +.+ ++..|..|.||||+|+.. + ..++++
T Consensus 138 ~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~--------------------------~~~~v~ 189 (278)
T 1dcq_A 138 VKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRT--------------------------SLHIVD 189 (278)
T ss_dssp HHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTT--------------------------THHHHH
T ss_pred hhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccc--------------------------hHHHHH
Confidence 999999999999887 554 445588999999999998 5 388999
Q ss_pred HHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcc
Q 037778 220 RLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA 298 (575)
Q Consensus 220 ~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~ 298 (575)
+|++.|++++..+ ..|.||||+|+..|+.++++.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus 190 ~Ll~~ga~in~~d----~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 190 FLVQNSGNLDKQT----GKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHCSCTTCCC----TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHCCCCccccC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999998776 3456999999999999999999999999 899999999999999999999999999998863
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.77 E-value=9.1e-19 Score=177.57 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=118.0
Q ss_pred CCCChHHhHHHHc-CCHHHHHHHHHcCCCCCccccc--cCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHH
Q 037778 38 KRKDTALHIAAAA-KQYGFVKELVQRMEPGDLAQEN--NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPID 114 (575)
Q Consensus 38 ~~g~TpLh~Aa~~-g~~~~v~~Ll~~~~~~~l~~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 114 (575)
..+.|+||.|+.. |+.++++.|++. |.+++..| ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh 273 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH 273 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 3457899999999 999999999999 89999998 89999999999999999999999999997 899999999999
Q ss_pred HHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhc--cccccccCCCCcHHHHHHhcC
Q 037778 115 LAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHE--KSAIGRAANEETALHALARKN 187 (575)
Q Consensus 115 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~--~~~~~~d~~g~tpLh~a~~~~ 187 (575)
+|+..|+.+++++|+++++ .+..|.+|.||||+|+..++.+++++|++. .. ......+..+.|+++.+....
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~-~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA-KMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HC-----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCcccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999 888999999999999999999999999987 32 222345567788888776543
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=4.7e-19 Score=148.98 Aligned_cols=105 Identities=26% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778 37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA 116 (575)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 116 (575)
|.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA 82 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 45555566666665666666655555 5555555555556666665555556666655555554 55555555666666
Q ss_pred HHcCChHHHHHHHhccc-cccCcCchhhH
Q 037778 117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHL 144 (575)
Q Consensus 117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 144 (575)
+..|+.+++++|+++++ .+..+..|.+|
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 55555566666555555 44444444443
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=4.6e-19 Score=149.01 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=97.3
Q ss_pred CCcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH
Q 037778 1 PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF 80 (575)
Q Consensus 1 p~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh 80 (575)
++++|.||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEH 80 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHH
Confidence 36789999999999999999999888 47888887 89999999999999999999999998 8999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCCCCCCcHH
Q 037778 81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPI 113 (575)
Q Consensus 81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 113 (575)
+|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 999999999999999999997 88888888873
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=4.5e-18 Score=180.84 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=116.9
Q ss_pred CChHHhHHHHcCCHHHHHHHHHcCCCCCcccc------ccCCChHHHHHHH---cCCHHHHHHHHhcCccccccCCCCCC
Q 037778 40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQE------NNVGYTALFFAAA---SGMVELAREIMTHNKAIATEQDDKRV 110 (575)
Q Consensus 40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~------d~~g~TpLh~Aa~---~g~~~iv~~Ll~~~~~~~~~~~~~g~ 110 (575)
..+.||.|+..|+.+.|+.|++. |.+++.+ |..|.||||+|++ .|+.+++++|+++|+++ +.+|..|.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCC
Confidence 45789999999999999999999 8998877 8899999999976 89999999999999997 99999999
Q ss_pred cHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778 111 LPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK 186 (575)
Q Consensus 111 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~ 186 (575)
||||+|+..|+.+++++|+++|+ .+..|.+|.||||+|+..++.++++.|++. +++.+. +|+|.+...
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~--ga~~~~------~~~h~~~~~ 277 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA--QAGTFA------FPLHVDYSW 277 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT--CC-------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh--CCCCCC------Ccceeeccc
Confidence 99999999999999999999999 888999999999999999999999999998 666554 677776543
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=2.5e-17 Score=137.23 Aligned_cols=90 Identities=26% Similarity=0.307 Sum_probs=83.9
Q ss_pred CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778 36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL 115 (575)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 115 (575)
.|.+|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDI 96 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHH
Confidence 478899999999999999999999998 8999999999999999999999999999999999996 8899999999999
Q ss_pred HHHcCChHHHHHH
Q 037778 116 AASLGHEDMVVYL 128 (575)
Q Consensus 116 A~~~g~~~~v~~L 128 (575)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999986
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=2.4e-16 Score=131.20 Aligned_cols=89 Identities=26% Similarity=0.280 Sum_probs=83.8
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778 2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF 81 (575)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~ 81 (575)
+.+|.|+||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDI 96 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHHH
Confidence 4578999999999999999999998 58899987 89999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHH
Q 037778 82 AAASGMVELAREI 94 (575)
Q Consensus 82 Aa~~g~~~iv~~L 94 (575)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999986
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=66.51 E-value=16 Score=35.68 Aligned_cols=148 Identities=7% Similarity=-0.028 Sum_probs=74.7
Q ss_pred HHHHHHHcCCHHHHHHHHhhC-CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcc-ccccCCChHHHHHHHc
Q 037778 8 KLYRAALTGDWAVARGIYDVH-EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLA-QENNVGYTALFFAAAS 85 (575)
Q Consensus 8 ~L~~Aa~~g~~~~v~~lL~~~-~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~-~~d~~g~TpLh~Aa~~ 85 (575)
.|-.....++.+..+.++++- +..+..-.|..|+..+......|+.+....+++...|.-+. ..|..|.-.+.-+...
T Consensus 40 ~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~ 119 (351)
T 3gvo_A 40 FIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALES 119 (351)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHh
Confidence 344445555555555444431 12222234777777777777777777777766654222211 2455666666666655
Q ss_pred CCHHHHHHHHhcC-cc-ccccCCCCCCcHHHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhCcHH
Q 037778 86 GMVELAREIMTHN-KA-IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTDLYD 155 (575)
Q Consensus 86 g~~~iv~~Ll~~~-~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~~~ 155 (575)
...+-...+++.- +. ..-..|.+|...+......+..+..+.+++.-. .-..+..|...+..++.....+
T Consensus 120 ~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~ 195 (351)
T 3gvo_A 120 ISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAE 195 (351)
T ss_dssp SCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred CCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHH
Confidence 5554433333321 11 112355566655555555555544444444322 1224555666665555544443
No 116
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.70 E-value=10 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=12.6
Q ss_pred cCCcchHHHHHHHHHHHHH
Q 037778 497 KDSRLWVAILVTVIASIPV 515 (575)
Q Consensus 497 ~~~~~~~~~~i~~~~~~~~ 515 (575)
+...+|+.+.+++++++.+
T Consensus 4 ~~~vp~WiIi~svl~GLLL 22 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLL 22 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHH
Confidence 3445778888877777544
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=54.30 E-value=77 Score=30.96 Aligned_cols=184 Identities=7% Similarity=-0.013 Sum_probs=103.1
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhC-CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcc-ccccCCChHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVH-EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLA-QENNVGYTALFF 81 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~-~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~-~~d~~g~TpLh~ 81 (575)
+|.-.+-.+...++.+..+.++++- |.-+....|..|+..+......+..+..+.+++...|.-.. ..+..|.-.+.-
T Consensus 41 ~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk 120 (369)
T 3k49_A 41 HGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQK 120 (369)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHH
T ss_pred cchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHH
Confidence 3444555666677766666666542 22233334888999999888889888877777765232211 235566666666
Q ss_pred HHHcCCHHHHHHHHhc-Ccc-ccccCCCCCCcHHHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhCcHH
Q 037778 82 AAASGMVELAREIMTH-NKA-IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTDLYD 155 (575)
Q Consensus 82 Aa~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~~~ 155 (575)
+......+-...+++. .+. ..-..|.+|...+......+..+-.+.+++.-. .-..+..|...+..++..+..+
T Consensus 121 ~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~ 200 (369)
T 3k49_A 121 ALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSE 200 (369)
T ss_dssp HHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHH
Confidence 6655554433333332 111 112466777776766666665544444433322 2336778888888888877766
Q ss_pred HHHHHHHhhhcc-ccccccCCCCcHHHHHHhcC
Q 037778 156 VALRVFEDLHEK-SAIGRAANEETALHALARKN 187 (575)
Q Consensus 156 ~~~~Ll~~~~~~-~~~~~d~~g~tpLh~a~~~~ 187 (575)
.-+.+++...+. ..-..|..|+--+..+...+
T Consensus 201 ~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 201 DQESILNELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp HHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 555565541111 11134555555555555444
No 118
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.60 E-value=16 Score=24.65 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHHHHH
Q 037778 499 SRLWVAILVTVIASIPV 515 (575)
Q Consensus 499 ~~~~~~~~i~~~~~~~~ 515 (575)
..+|+.+.+++++++.+
T Consensus 9 ~vp~wiIi~svl~GLll 25 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLL 25 (54)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH
Confidence 35777777777777543
No 119
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=52.89 E-value=30 Score=21.97 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=10.9
Q ss_pred cchHHHHHHHHHHHHH
Q 037778 500 RLWVAILVTVIASIPV 515 (575)
Q Consensus 500 ~~~~~~~i~~~~~~~~ 515 (575)
.+|+.+.+++++++.+
T Consensus 8 vp~wiIi~s~l~GLll 23 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLL 23 (42)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 4777777777776543
No 120
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=46.05 E-value=54 Score=31.79 Aligned_cols=58 Identities=9% Similarity=-0.005 Sum_probs=29.0
Q ss_pred cCCCCCCcHHHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778 104 EQDDKRVLPIDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTDLYDVALRVF 161 (575)
Q Consensus 104 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 161 (575)
..|.+|.-.+......+..+..+.+++.-. .-..++.|...+..++..+..+.-+.++
T Consensus 212 ~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii 273 (351)
T 3gvo_A 212 VQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLI 273 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHH
Confidence 355556656666666555554444444322 2224555555655555555444333333
No 121
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=37.00 E-value=76 Score=32.54 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=49.8
Q ss_pred hhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCC-cHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHH
Q 037778 142 SHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEE-TALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQR 220 (575)
Q Consensus 142 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~-tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~ 220 (575)
.+.+...+..|..+.+..+++.. ...--..|..-. +.+...++.|. ...+.++.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M-~~~g~~Pd~~tyn~lI~~~~~~g~----------------------~~~A~~l~~~ 165 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQM-KAFGIQPRLRSYGPALFGFCRKGD----------------------ADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTC----------------------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCccceehHHHHHHHHCCC----------------------HHHHHHHHHH
Confidence 44566667777777777776651 110001111111 22333344442 2345677777
Q ss_pred HHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHH
Q 037778 221 LWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIRE 261 (575)
Q Consensus 221 L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~ 261 (575)
+.+.|..++.... .+.+...++.|+.+-+..+++.
T Consensus 166 M~~~G~~Pd~~ty------~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 166 MVESEVVPEEPEL------AALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHTTCCCCHHHH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHH------HHHHHHHhhCCCHHHHHHHHHH
Confidence 7777777776551 1566667778887766666544
No 122
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=27.57 E-value=3.4e+02 Score=26.16 Aligned_cols=149 Identities=11% Similarity=0.026 Sum_probs=73.6
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhhC-CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCC-ccccccCCChHHH
Q 037778 3 RRRRLKLYRAALTGDWAVARGIYDVH-EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGD-LAQENNVGYTALF 80 (575)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~-~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~d~~g~TpLh 80 (575)
..|+..+-.....|+.+....+++.- +.-.....+..|.-.+..+......+-...+++...+.. --.+|.+|+..+.
T Consensus 76 ~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ 155 (369)
T 3k49_A 76 VFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQ 155 (369)
T ss_dssp TTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHH
T ss_pred cccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHH
Confidence 34555566666666666555555542 222222235666666666666666555555554432221 1135666666666
Q ss_pred HHHHcCCHH----HHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhC
Q 037778 81 FAAASGMVE----LAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTD 152 (575)
Q Consensus 81 ~Aa~~g~~~----iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~ 152 (575)
.....+..+ +++.+..+-..+ ..+..|...+.-+...+..+--+.+++.-. .-..|..|.-.+..++..+
T Consensus 156 ~~l~~~~~~~~~~i~~~~~~~~~~l--s~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 156 KAIETIPIEKLPFILSSLTGHIYHL--STHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp HHHHHSCGGGCHHHHHHHTTTHHHH--HTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH--hCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 555554332 333333222222 344555555555555555444444433222 2235666666666666544
Q ss_pred c
Q 037778 153 L 153 (575)
Q Consensus 153 ~ 153 (575)
.
T Consensus 234 ~ 234 (369)
T 3k49_A 234 Q 234 (369)
T ss_dssp T
T ss_pred C
Confidence 3
No 123
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=23.99 E-value=97 Score=29.60 Aligned_cols=158 Identities=8% Similarity=-0.035 Sum_probs=88.9
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhC-CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcc-ccccCCChHHHH
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVH-EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLA-QENNVGYTALFF 81 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~-~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~-~~d~~g~TpLh~ 81 (575)
+|.-.+-.....++.+....++++- +.-+..-.|..|+..+......+..+....+++...|.-.. ..+.+|.-.+.-
T Consensus 23 ~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~ 102 (333)
T 3bwt_A 23 HGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQK 102 (333)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHH
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHH
Confidence 3444555666677777666666542 22223334888888888888888877766666653121111 245556655555
Q ss_pred HHHcCC-HH----HHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhC
Q 037778 82 AAASGM-VE----LAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTD 152 (575)
Q Consensus 82 Aa~~g~-~~----iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~ 152 (575)
+..... .+ +++.|...-.. -..|.+|...+......+..+-.+.+++.-. .-..+..|...+..++..+
T Consensus 103 ~l~~~~~~~~~~~i~~el~~~~~~--L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l~~~ 180 (333)
T 3bwt_A 103 LIECIKTDEEAQIVVDSLRPYTVQ--LSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHG 180 (333)
T ss_dssp HHHHCCSHHHHHHHHHHHGGGHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHHHHC
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHH--HhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhC
Confidence 554432 22 23333222112 2467777777777777676665555544322 2335677877887777766
Q ss_pred cHHHHHHHHHh
Q 037778 153 LYDVALRVFED 163 (575)
Q Consensus 153 ~~~~~~~Ll~~ 163 (575)
..+--+.+++.
T Consensus 181 ~~~~~~~l~~e 191 (333)
T 3bwt_A 181 TTEQCDNLCDK 191 (333)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 65544444443
No 124
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.56 E-value=90 Score=30.08 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhee
Q 037778 475 ATLFVSIAAMMVVFSAAFFIVF 496 (575)
Q Consensus 475 ~~l~~s~~~m~~af~~~~~~v~ 496 (575)
.+..+|++++..+|++|+|-+=
T Consensus 281 ~LTiit~IflP~T~IaGiyGMN 302 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGMN 302 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhccCc
Confidence 3466788889999999999763
No 125
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.94 E-value=60 Score=19.94 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHH
Q 037778 8 KLYRAALTGDWAVARGI 24 (575)
Q Consensus 8 ~L~~Aa~~g~~~~v~~l 24 (575)
.++.|+..||.+.++.|
T Consensus 16 qiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH
Confidence 56788888999888754
No 126
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=21.27 E-value=4.8e+02 Score=25.70 Aligned_cols=181 Identities=7% Similarity=0.017 Sum_probs=98.4
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhhCC---CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCC-CC-cc-ccccCCCh
Q 037778 4 RRRLKLYRAALTGDWAVARGIYDVHE---GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEP-GD-LA-QENNVGYT 77 (575)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~---~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~-~~-l~-~~d~~g~T 77 (575)
.|.-.+-.+...++.+....++++-. ..+....|.+|+..+......+..+..+.+++...+ .. .. ..+..|..
T Consensus 122 ~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~Gcr 201 (412)
T 3k62_A 122 FACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCR 201 (412)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHH
Confidence 44455556666666666666666541 112222388898888888888888777777765311 01 11 13455555
Q ss_pred HHHHHHHcCC----------------H----HHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHH-HHHHHhc---cc
Q 037778 78 ALFFAAASGM----------------V----ELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDM-VVYLYGQ---TK 133 (575)
Q Consensus 78 pLh~Aa~~g~----------------~----~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~-v~~Ll~~---~~ 133 (575)
.+.-+..... . +++..++++... -..|.+|.-.+......|..+- -+.+++. +.
T Consensus 202 VvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~--L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~ 279 (412)
T 3k62_A 202 VVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQE--LATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRN 279 (412)
T ss_dssp HHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHH--HHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5544444322 1 122333333222 2567888888888888877543 2333331 11
Q ss_pred --cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcC
Q 037778 134 --NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187 (575)
Q Consensus 134 --~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~ 187 (575)
.-..++.|...+..++..+..+.-..+++....... .....|..+|...+...
T Consensus 280 ~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~-~~~~~~~~~l~~L~~Dq 334 (412)
T 3k62_A 280 LLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYI-PHPDTGKDALDIMMFHQ 334 (412)
T ss_dssp HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSC-CCTTTCCCHHHHHHHST
T ss_pred HHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhcc-CCccccchHHHHHhcCC
Confidence 334778888888888887776655555543100000 11223455666555544
Done!