BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037779
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZBT|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|D Chain D, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
Length = 297
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/291 (63%), Positives = 223/291 (76%), Gaps = 1/291 (0%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
+K F +K G A+M +GGVIMDV TPEQA IAEEAGA AVMALERVPADIRAQGGVARMS
Sbjct: 6 EKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMS 65
Query: 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
DP++IK+I ++V+IPVMAK RIGHFVEA ILEAIGVD++DESEVLTPADEE+HI+K F+
Sbjct: 66 DPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFK 125
Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
VPFVCG RNLGE+LRRI EGAAMIRTKGEAGTGN+VEAVRH R++ +IR ++++ +DE+
Sbjct: 126 VPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDEL 185
Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXX 259
+AK I AP++LV GRLPVV+F +MM LG D
Sbjct: 186 MAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSG 245
Query: 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVK-VERYANRS 309
DP +RARAIV+AV +Y+DP+VLAEVS LGE MVGI+L+ +K ER A R
Sbjct: 246 DPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKRG 296
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 333 bits (854), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 161/279 (57%), Positives = 215/279 (77%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
VK G+A+M +GGVIMDV+ EQA+IAEEAGA AVMALERVPADIRA GGVARM+DP +++
Sbjct: 12 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVE 71
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
++ ++V+IPVMAKARIGH VEA++LEA+GVDY+DESEVLTPADEE H+NK+ + VPFVCG
Sbjct: 72 EVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCG 131
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
CR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V +R + M +DE+ T AKN
Sbjct: 132 CRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKN 191
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
+ APY+L++Q K+ G+LPVV+F +MMQLG D +P + A
Sbjct: 192 LGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFA 251
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVER 304
+AIV+A T+++D ++AE+S LG AM GI+++++ E+
Sbjct: 252 KAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQ 290
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 333 bits (853), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 161/279 (57%), Positives = 215/279 (77%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
VK G+A+M +GGVIMDV+ EQA+IAEEAGA AVMALERVPADIRA GGVARM+DP +++
Sbjct: 9 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVE 68
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
++ ++V+IPVMAKARIGH VEA++LEA+GVDY+DESEVLTPADEE H+NK+ + VPFVCG
Sbjct: 69 EVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCG 128
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
CR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V +R + M +DE+ T AKN
Sbjct: 129 CRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKN 188
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
+ APY+L++Q K+ G+LPVV+F +MMQLG D +P + A
Sbjct: 189 LGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFA 248
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVER 304
+AIV+A T+++D ++AE+S LG AM GI+++++ E+
Sbjct: 249 KAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQ 287
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/272 (59%), Positives = 205/272 (75%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
VK G+A+M +GGVIMDVV EQA+IAE AGA AVMALERVPADIRA GGVARM+DP +I+
Sbjct: 40 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIE 99
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
++ ++V+IPVMAK RIGH+VEA++LEA+GVDY+DESEVLTPADEE HI+K F VPFVCG
Sbjct: 100 EVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCG 159
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
CR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V IR + NM +DE+ AK
Sbjct: 160 CRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQ 219
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
+ AP +++ + K+LGRLPVV+F +MM LG D +P + A
Sbjct: 220 LGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYA 279
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDL 297
RAIV+A T+Y D +++A +S GLG AM GID+
Sbjct: 280 RAIVEATTHYEDYELIAHLSKGLGGAMRGIDI 311
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 206/283 (72%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
KK + +K G A+M +GGVIMDV + EQA+IAEEAGA AVMALERVPADIR +GGVARM+
Sbjct: 24 KKGTWIIKKGFAEMFKGGVIMDVTSAEQAKIAEEAGAVAVMALERVPADIRKEGGVARMA 83
Query: 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
I++I +V+IPVMAK RIGH EA+ILE +GVD++DESEVLTPAD+ HINKH F+
Sbjct: 84 SIAKIREIMEAVSIPVMAKVRIGHIAEAKILEELGVDFIDESEVLTPADDRFHINKHEFK 143
Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
VPFVCG R+LGE+LRRI EGAAMIRTKGEAGTGN+VEAV+H+R VM I+ + M+D+E+
Sbjct: 144 VPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQIKQVTKMEDEEL 203
Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXX 259
+ K I AP +L+ + K+LGRLPVV+F +MM LG D
Sbjct: 204 VAYGKEIGAPVELLREVKRLGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFKSK 263
Query: 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV 302
DP + A+A+V AVT + +P +L ++S +GE M G+D+ +++V
Sbjct: 264 DPRKMAKAMVLAVTYWDNPRILLKISEDIGEPMRGLDVEELEV 306
>pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|B Chain B, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|C Chain C, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|D Chain D, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|E Chain E, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|F Chain F, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
Length = 297
Score = 315 bits (807), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/278 (54%), Positives = 200/278 (71%), Gaps = 1/278 (0%)
Query: 24 FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL 83
F +K GLAQML+GGVIMDVVTPEQA+IAE++GACAVMALE +PAD+R G V RMSDP++
Sbjct: 6 FKIKSGLAQMLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKM 65
Query: 84 IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV 143
IK I +SV+IPVMAK RIGHFVEAQI+EA+ VDY+DESEVLTPAD +HI K F+VPFV
Sbjct: 66 IKDIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFV 125
Query: 144 CGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM-DDDEVFTF 202
CG ++LGE+LRRI EGAAMIRTKGEAGTG++ EAV+H+R + +I+ + + +D++
Sbjct: 126 CGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKV 185
Query: 203 AKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPV 262
A+ + P L+ + G+LPVV+F ++MQLGCD +PV
Sbjct: 186 AEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPV 245
Query: 263 RRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
R A A+V+A T++ +P L EVS LGE M G+ + +
Sbjct: 246 RLATAVVEATTHFDNPSKLLEVSSDLGELMGGVSIESI 283
>pdb|2YZR|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
Length = 330
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/329 (51%), Positives = 207/329 (62%), Gaps = 38/329 (11%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
KK +K G A+M++ GV+MDV EQA+IAEEAGA AVMALERVPADIRA GGVARMS
Sbjct: 2 KKGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS 61
Query: 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
DP LI++I +V+IPVMAK RIGH EA +LEAIGVD +DESEVLT AD HI K F
Sbjct: 62 DPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFN 121
Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
VPFVCG RNLGE++RRI EGAAMIRTKGEAGTGNIVEAVRH+R + I L+ M D+EV
Sbjct: 122 VPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEV 181
Query: 200 -------------------------------------FTFAKNIAAPYDLVMQTKQLGRL 222
FT A+ I Y+++++ K+LGRL
Sbjct: 182 YGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRL 241
Query: 223 PVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRARAIVQAVTNYSDPDVLA 282
PVV+F +MMQLG D +P+ RARAIV+A NY PD++A
Sbjct: 242 PVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVA 301
Query: 283 EVSCGLGEAMVGIDLNDV-KVERYANRSD 310
EVS LGEAM GID+ + + E+ R D
Sbjct: 302 EVSKNLGEAMKGIDITQISEAEKMQYRGD 330
>pdb|4ADT|A Chain A, Crystal Structure Of Plasmodial Plp Synthase
pdb|4ADT|B Chain B, Crystal Structure Of Plasmodial Plp Synthase
pdb|4ADU|A Chain A, Crystal Structure Of Plasmodial Plp Synthase With Bound
R5p Intermediate
pdb|4ADU|B Chain B, Crystal Structure Of Plasmodial Plp Synthase With Bound
R5p Intermediate
Length = 297
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 200/285 (70%), Gaps = 3/285 (1%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
+K G +ML+GGVIMDV EQA+IAE+AGA VM LE +P+++R GVAR DP I+
Sbjct: 12 LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIE 71
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
+I+ ++I V+AK RIGHFVEAQILE + VD +DESEVLT ADE NHINKH F+ PFVCG
Sbjct: 72 EIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCG 131
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
C NLGE+LRRI EGA+MIRTKGEAGTGNI+EA++H+R+V +I+ L ++D+ EV+ FAK
Sbjct: 132 CTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKK 191
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
+ AP DL++ T++L RLPVV+F M MQLG D +P + A
Sbjct: 192 LRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMA 251
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD 310
+IV AV+N+++P +L VS GLG+AM G N ++ N+S+
Sbjct: 252 SSIVMAVSNFNNPKILLNVSLGLGKAMHG---NTKVSNKWKNKSE 293
>pdb|4ADS|A Chain A, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|B Chain B, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|C Chain C, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|D Chain D, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|E Chain E, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|F Chain F, Crystal Structure Of Plasmodial Plp Synthase Complex
Length = 282
Score = 303 bits (775), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 193/269 (71%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
+K G +ML+GGVIMDV EQA+IAE+AGA VM LE +P+++R GVAR DP I+
Sbjct: 10 LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIE 69
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
+I+ ++I V+AK RIGHFVEAQILE + VD +DESEVLT ADE NHINKH F+ PFVCG
Sbjct: 70 EIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCG 129
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
C NLGE+LRRI EGA+MIRTKGEAGTGNI+EA++H+R+V +I+ L ++D+ EV+ FAK
Sbjct: 130 CTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKK 189
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
+ AP DL++ T++L RLPVV+F M MQLG D +P + A
Sbjct: 190 LRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMA 249
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVG 294
+IV AV+N+++P +L VS GLG+AM G
Sbjct: 250 SSIVMAVSNFNNPKILLNVSLGLGKAMHG 278
>pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O06|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O07|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
Length = 291
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/269 (54%), Positives = 193/269 (71%), Gaps = 1/269 (0%)
Query: 33 MLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT 92
ML+GGVIMDVVTPEQA+IAE++GACAVMALE +PAD+R G V RMSDP++IK I +SV+
Sbjct: 9 MLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVS 68
Query: 93 IPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGES 152
IPVMAK RIGHFVEAQI+EA+ VDY+DESEVLTPAD +HI K F+VPFVCG ++LGE+
Sbjct: 69 IPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEA 128
Query: 153 LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKNIAAPYD 211
LRRI EGAAMIRTKGEAGTG++ EAV+H+R + +I+ + + +D++ A+ + P
Sbjct: 129 LRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVS 188
Query: 212 LVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRARAIVQA 271
L+ + G+LPVV+F ++MQLGCD +PVR A A+V+A
Sbjct: 189 LLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEA 248
Query: 272 VTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
T++ +P L EVS LGE M G+ + +
Sbjct: 249 TTHFDNPSKLLEVSSDLGELMGGVSIESI 277
>pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIR|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
Length = 335
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/314 (49%), Positives = 200/314 (63%), Gaps = 37/314 (11%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
+K G A+M++GGVIMDV EQARIAEEAGA AVMAL +VPADIR GGVARM+ + I+
Sbjct: 15 LKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQ 74
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
+I +VTIPVMAK RIGH EA+ILEA+GVD +DESEVLTPAD HI K F PFVCG
Sbjct: 75 EIMDAVTIPVMAKCRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCG 134
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
RNLGE++RRI EGAAMIRTKGEAGTGNI+EAVRHVR V +IR+++ M D+E++ A+
Sbjct: 135 ARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEK 194
Query: 206 IAAP-------------------------------------YDLVMQTKQLGRLPVVHFX 228
A P Y ++++ K+LGRLPVV+F
Sbjct: 195 FAEPYLRLAFSVKEISGLPKRVLENEPIYEGFTYREIVEDIYKILLEIKKLGRLPVVNFA 254
Query: 229 XXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRARAIVQAVTNYSDPDVLAEVSCGL 288
+MM +G D +P + ARAIV+AV ++ +PDVLAE+S +
Sbjct: 255 AGGVATPADAALMMAMGMDGVFVGSGIFKSSNPPKMARAIVEAVNHWDEPDVLAEISREI 314
Query: 289 GEAMVGIDLNDVKV 302
GE M G + +++V
Sbjct: 315 GEPMRGQAIEELQV 328
>pdb|1C40|A Chain A, Bar-Headed Goose Hemoglobin (Aquomet Form)
Length = 141
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
++ G+A I+ G+ +VEAV H+ + G + L N+ ++
Sbjct: 48 LQHGSAQIKAHGKKVVAALVEAVNHIDDIAGALSKLSNLHAQKL 91
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain
pdb|1M8Z|A Chain A, Crystal Structure Of A Pumilio-Homology Domain
pdb|1M8W|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-19 Rna
pdb|1M8W|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-19 Rna
pdb|1M8X|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-14 Rna
pdb|1M8X|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-14 Rna
pdb|1M8Y|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre2-10 Rna
pdb|1M8Y|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre2-10 Rna
pdb|3Q0L|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nrea
pdb|3Q0L|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nrea
pdb|3Q0M|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nreb
pdb|3Q0M|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nreb
pdb|3Q0N|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0N|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0O|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0O|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0P|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Hunchback Nre
pdb|3Q0P|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Hunchback Nre
Length = 349
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 6 VVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM--ALE 63
+V V+GN I + + K+ LA+ +RG V+ +A + C V+ ALE
Sbjct: 66 MVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVL---------SLALQMYGCRVIQKALE 116
Query: 64 RVPADIRAQGGVARMSDPQLIKQIK 88
+P+D Q + R D ++K +K
Sbjct: 117 FIPSD--QQNEMVRELDGHVLKCVK 139
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With
Cyclinb Reverse Rna
pdb|3BSB|B Chain B, Crystal Structure Of Human Pumilio1 In Complex With
Cyclinb Reverse Rna
pdb|3BSX|A Chain A, Crystal Structure Of Human Pumilio 1 In Complex With Puf5
Rna
pdb|3BSX|B Chain B, Crystal Structure Of Human Pumilio 1 In Complex With Puf5
Rna
Length = 343
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 6 VVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM--ALE 63
+V V+GN I + + K+ LA+ +RG V+ +A + C V+ ALE
Sbjct: 66 MVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVL---------SLALQMYGCRVIQKALE 116
Query: 64 RVPADIRAQGGVARMSDPQLIKQIK 88
+P+D Q + R D ++K +K
Sbjct: 117 FIPSD--QQNEMVRELDGHVLKCVK 139
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine
Recognition In Puf Domains
pdb|2YJY|B Chain B, A Specific And Modular Binding Code For Cytosine
Recognition In Puf Domains
Length = 350
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 6 VVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM--ALE 63
+V V+GN I + + K+ LA+ +RG V+ +A + C V+ ALE
Sbjct: 67 MVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVL---------SLALQMYGCRVIQKALE 117
Query: 64 RVPADIRAQGGVARMSDPQLIKQIK 88
+P+D Q + R D ++K +K
Sbjct: 118 FIPSD--QQNEMVRELDGHVLKCVK 140
>pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 72 QGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEEN 131
Q V+ S PQL Q+ P+ +G + A ++E +G++Y+ E T + ++
Sbjct: 238 QTLVSHGSVPQLFSQM------PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291
Query: 132 HINKHN 137
H + N
Sbjct: 292 HFGEKN 297
>pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 72 QGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEEN 131
Q V+ S PQL Q+ P+ +G + A ++E +G++Y+ E T + ++
Sbjct: 238 QTLVSHGSVPQLFSQM------PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291
Query: 132 HINKHN 137
H + N
Sbjct: 292 HFGEKN 297
>pdb|3BW4|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 30 LAQMLRGGVIMDVV--TPEQARIAEEAGACAVMALERVPADIRAQG--GVARMSDP---- 81
+A++ R G + V TPE+AR E AGA AV+A + A G G R S
Sbjct: 138 IARLRRAGTLTLVTATTPEEARAVEAAGADAVIA-----QGVEAGGHQGTHRDSSEDDGA 192
Query: 82 -----QLIKQIKSSVTIPVMAKARI 101
L+ Q++ +V IPV+A I
Sbjct: 193 GIGLLSLLAQVREAVDIPVVAAGGI 217
>pdb|3BW2|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 30 LAQMLRGGVIMDVV--TPEQARIAEEAGACAVMALERVPADIRAQG--GVARMSDP---- 81
+A++ R G + V TPE+AR E AGA AV+A + A G G R S
Sbjct: 138 IARLRRAGTLTLVTATTPEEARAVEAAGADAVIA-----QGVEAGGHQGTHRDSSEDDGA 192
Query: 82 -----QLIKQIKSSVTIPVMAKARI 101
L+ Q++ +V IPV+A I
Sbjct: 193 GIGLLSLLAQVREAVDIPVVAAGGI 217
>pdb|3BW3|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 30 LAQMLRGGVIMDVV--TPEQARIAEEAGACAVMALERVPADIRAQG--GVARMSDP---- 81
+A++ R G + V TPE+AR E AGA AV+A + A G G R S
Sbjct: 138 IARLRRAGTLTLVTATTPEEARAVEAAGADAVIA-----QGVEAGGDQGTHRDSSEDDGA 192
Query: 82 -----QLIKQIKSSVTIPVMAKARI 101
L+ Q++ +V IPV+A I
Sbjct: 193 GIGLLSLLAQVREAVDIPVVAAGGI 217
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 138 FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD 197
+ VP GC L E++ R+ E +I K TGN+ V ++ ++ D +L + DD
Sbjct: 157 YNVPSRTGCDMLPETVGRLAEIKNIIAIK--EATGNLTR-VHQIKELVSDDFILLSGDDA 213
Query: 198 EVFTFAK 204
F +
Sbjct: 214 SALDFMQ 220
>pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
pdb|2Z6I|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
Length = 332
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 37 GVIMDVVTPE--QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP 94
G+I+ V P A+ E+ GA AV+A A G + +++ L++Q+ ++++IP
Sbjct: 110 GIIVIPVVPSVALAKRXEKIGADAVIA-----EGXEAGGHIGKLTTXTLVRQVATAISIP 164
Query: 95 VMAKARI 101
V+A I
Sbjct: 165 VIAAGGI 171
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 37 GVIMDVVTPE--QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP 94
G+I+ V P A+ E+ GA AV+A + A G + +++ L++Q+ ++++IP
Sbjct: 110 GIIVIPVVPSVALAKRMEKIGADAVIA-----EGMEAGGHIGKLTTMTLVRQVATAISIP 164
Query: 95 VMAKARI 101
V+A I
Sbjct: 165 VIAAGGI 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,711,204
Number of Sequences: 62578
Number of extensions: 271836
Number of successful extensions: 658
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 32
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)