Query 037779
Match_columns 310
No_of_seqs 177 out of 1546
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1606 Stationary phase-induc 100.0 2.5E-52 5.4E-57 356.7 18.8 296 15-310 1-296 (296)
2 TIGR00343 pyridoxal 5'-phospha 100.0 2E-45 4.4E-50 330.8 25.7 282 27-309 2-286 (287)
3 PRK04180 pyridoxal biosynthesi 100.0 1.9E-44 4.1E-49 325.4 22.0 288 21-309 3-292 (293)
4 COG0214 SNZ1 Pyridoxine biosyn 100.0 9.6E-45 2.1E-49 314.2 19.1 284 25-308 10-294 (296)
5 cd04727 pdxS PdxS is a subunit 100.0 4.8E-41 1E-45 302.4 26.0 279 29-308 2-282 (283)
6 COG0134 TrpC Indole-3-glycerol 100.0 4.6E-35 9.9E-40 261.9 18.4 205 10-269 44-253 (254)
7 PLN02460 indole-3-glycerol-pho 100.0 9.6E-35 2.1E-39 269.7 18.7 204 12-269 119-334 (338)
8 PF00218 IGPS: Indole-3-glycer 100.0 2.4E-34 5.2E-39 259.9 15.8 206 10-268 46-254 (254)
9 PRK13957 indole-3-glycerol-pho 100.0 7.5E-33 1.6E-37 248.4 21.0 204 11-268 40-246 (247)
10 PRK09427 bifunctional indole-3 100.0 1.3E-31 2.7E-36 260.4 20.1 230 11-297 49-285 (454)
11 PRK00278 trpC indole-3-glycero 100.0 8.2E-31 1.8E-35 239.4 23.4 205 11-270 49-258 (260)
12 PRK13802 bifunctional indole-3 100.0 6.4E-31 1.4E-35 265.8 20.8 208 12-274 50-262 (695)
13 PF01680 SOR_SNZ: SOR/SNZ fami 100.0 1.8E-29 3.8E-34 211.0 13.1 204 25-228 4-207 (208)
14 cd00331 IGPS Indole-3-glycerol 100.0 8.8E-28 1.9E-32 213.9 22.6 203 11-268 10-217 (217)
15 KOG4201 Anthranilate synthase 100.0 1E-27 2.2E-32 206.2 12.9 205 11-270 70-284 (289)
16 PF04131 NanE: Putative N-acet 99.9 3.7E-21 8.1E-26 164.5 18.3 174 46-273 3-191 (192)
17 COG3010 NanE Putative N-acetyl 99.9 5.4E-20 1.2E-24 157.9 18.1 195 29-274 8-228 (229)
18 COG0352 ThiE Thiamine monophos 99.8 1.2E-18 2.6E-23 153.6 18.5 183 45-275 24-209 (211)
19 PRK01130 N-acetylmannosamine-6 99.7 1.4E-16 3E-21 142.3 19.5 188 35-273 15-220 (221)
20 COG0106 HisA Phosphoribosylfor 99.7 4.1E-16 9E-21 138.5 21.2 213 27-264 11-234 (241)
21 cd04729 NanE N-acetylmannosami 99.7 3.2E-16 7E-21 139.8 19.1 184 32-263 16-217 (219)
22 PRK06512 thiamine-phosphate py 99.7 1E-15 2.3E-20 136.6 18.8 185 45-276 29-216 (221)
23 PRK03512 thiamine-phosphate py 99.7 1.8E-15 3.9E-20 134.2 18.5 197 32-275 11-209 (211)
24 PRK14114 1-(5-phosphoribosyl)- 99.7 6.3E-15 1.4E-19 133.2 21.1 213 28-267 11-238 (241)
25 PRK02615 thiamine-phosphate py 99.7 3.4E-15 7.3E-20 141.0 19.3 184 46-275 161-345 (347)
26 PRK12290 thiE thiamine-phospha 99.7 2.3E-15 5E-20 144.4 17.5 188 45-277 220-417 (437)
27 PRK14024 phosphoribosyl isomer 99.7 1.1E-14 2.4E-19 131.8 20.7 199 28-266 14-236 (241)
28 COG0107 HisF Imidazoleglycerol 99.7 2.4E-15 5.3E-20 131.6 15.4 211 39-268 26-245 (256)
29 PRK13585 1-(5-phosphoribosyl)- 99.7 2.1E-14 4.5E-19 129.7 20.6 199 28-265 13-235 (241)
30 PRK00748 1-(5-phosphoribosyl)- 99.6 2E-14 4.3E-19 129.2 20.3 192 29-260 12-228 (233)
31 TIGR00007 phosphoribosylformim 99.6 2.4E-14 5.2E-19 128.4 20.4 193 29-260 10-226 (230)
32 PLN02446 (5-phosphoribosyl)-5- 99.6 3.1E-14 6.6E-19 129.1 20.3 206 28-259 11-247 (262)
33 PRK13587 1-(5-phosphoribosyl)- 99.6 1.4E-14 3E-19 130.5 17.9 205 28-257 12-226 (234)
34 cd04732 HisA HisA. Phosphorib 99.6 4.9E-14 1.1E-18 126.6 21.5 194 28-261 10-228 (234)
35 cd04723 HisA_HisF Phosphoribos 99.6 5.7E-14 1.2E-18 126.5 19.3 205 28-262 10-228 (233)
36 PRK00043 thiE thiamine-phospha 99.6 3.9E-14 8.4E-19 125.2 17.4 186 45-274 24-210 (212)
37 PRK09140 2-dehydro-3-deoxy-6-p 99.6 1.7E-13 3.7E-18 121.1 20.6 172 46-273 26-204 (206)
38 PF05690 ThiG: Thiazole biosyn 99.6 7.5E-15 1.6E-19 129.3 10.9 154 128-284 53-236 (247)
39 TIGR02129 hisA_euk phosphoribo 99.6 1E-13 2.2E-18 125.2 18.3 202 28-257 11-237 (253)
40 TIGR01919 hisA-trpF 1-(5-phosp 99.6 2.1E-13 4.5E-18 123.6 20.3 209 28-259 13-232 (243)
41 cd04731 HisF The cyclase subun 99.6 3E-13 6.4E-18 122.5 21.4 184 44-266 28-237 (243)
42 PF00977 His_biosynth: Histidi 99.6 9.6E-15 2.1E-19 131.2 10.9 207 28-258 10-226 (229)
43 PRK13586 1-(5-phosphoribosyl)- 99.6 1.7E-13 3.8E-18 123.2 19.0 204 28-258 12-224 (232)
44 PRK00208 thiG thiazole synthas 99.6 6.8E-14 1.5E-18 124.8 15.9 151 127-280 52-232 (250)
45 PRK01033 imidazole glycerol ph 99.6 4.7E-13 1E-17 122.4 21.9 211 30-260 16-234 (258)
46 PRK02083 imidazole glycerol ph 99.6 4.5E-13 9.8E-18 122.1 21.1 187 42-267 29-242 (253)
47 cd04728 ThiG Thiazole synthase 99.6 7.1E-14 1.5E-18 124.5 15.3 152 127-280 52-232 (248)
48 PRK07695 transcriptional regul 99.6 3.2E-13 6.8E-18 119.0 18.9 179 46-275 19-200 (201)
49 CHL00162 thiG thiamin biosynth 99.6 1.1E-13 2.5E-18 123.2 16.0 155 127-284 60-250 (267)
50 TIGR00693 thiE thiamine-phosph 99.5 2.6E-13 5.6E-18 118.7 16.7 179 45-268 16-196 (196)
51 TIGR03151 enACPred_II putative 99.5 7.2E-13 1.6E-17 124.0 19.9 179 37-260 17-198 (307)
52 PLN02334 ribulose-phosphate 3- 99.5 1.5E-12 3.3E-17 117.0 19.7 188 46-274 24-224 (229)
53 PRK08883 ribulose-phosphate 3- 99.5 2.1E-12 4.6E-17 115.3 19.8 187 46-274 16-217 (220)
54 TIGR00735 hisF imidazoleglycer 99.5 2.6E-12 5.6E-17 117.3 20.2 204 43-263 30-240 (254)
55 PLN02617 imidazole glycerol ph 99.5 1.3E-12 2.9E-17 130.1 19.3 221 38-270 262-530 (538)
56 PLN02898 HMP-P kinase/thiamin- 99.5 9E-13 2E-17 131.3 18.1 183 46-274 311-497 (502)
57 TIGR03572 WbuZ glycosyl amidat 99.5 4.8E-12 1E-16 113.8 20.6 175 43-256 30-231 (232)
58 PRK07455 keto-hydroxyglutarate 99.5 5.2E-12 1.1E-16 110.1 19.7 158 46-258 28-186 (187)
59 PRK04128 1-(5-phosphoribosyl)- 99.5 3.6E-12 7.7E-17 114.5 19.2 204 28-263 12-222 (228)
60 COG2022 ThiG Uncharacterized e 99.5 1.3E-12 2.7E-17 114.6 15.4 153 127-282 59-241 (262)
61 PRK06552 keto-hydroxyglutarate 99.5 5.8E-12 1.3E-16 111.8 19.7 172 46-273 29-210 (213)
62 cd00564 TMP_TenI Thiamine mono 99.5 5.7E-12 1.2E-16 109.2 19.2 178 45-269 15-195 (196)
63 PF02581 TMP-TENI: Thiamine mo 99.5 3.1E-12 6.7E-17 110.8 16.5 165 45-255 15-180 (180)
64 cd04726 KGPDC_HPS 3-Keto-L-gul 99.5 6.3E-12 1.4E-16 110.3 18.4 176 46-267 17-201 (202)
65 PRK04302 triosephosphate isome 99.5 5.3E-12 1.2E-16 113.0 18.0 165 80-272 44-222 (223)
66 PRK09517 multifunctional thiam 99.4 3.2E-12 6.9E-17 132.9 18.5 195 46-286 23-228 (755)
67 TIGR01163 rpe ribulose-phospha 99.4 9.4E-12 2E-16 109.7 18.7 186 45-268 14-209 (210)
68 PRK05581 ribulose-phosphate 3- 99.4 8.5E-12 1.8E-16 110.9 18.2 189 45-272 19-218 (220)
69 TIGR00734 hisAF_rel hisA/hisF 99.4 1.2E-11 2.5E-16 110.7 18.3 195 28-258 11-219 (221)
70 PRK08745 ribulose-phosphate 3- 99.4 5.6E-11 1.2E-15 106.2 22.4 185 46-274 20-221 (223)
71 COG0036 Rpe Pentose-5-phosphat 99.4 6.7E-11 1.5E-15 104.1 21.1 188 46-273 20-218 (220)
72 COG0042 tRNA-dihydrouridine sy 99.4 5.7E-12 1.2E-16 118.6 15.4 149 46-265 83-241 (323)
73 cd04730 NPD_like 2-Nitropropan 99.4 3.9E-11 8.5E-16 107.8 20.2 181 37-260 8-193 (236)
74 cd00429 RPE Ribulose-5-phospha 99.4 3E-11 6.6E-16 106.4 19.0 182 46-268 16-210 (211)
75 TIGR03128 RuMP_HxlA 3-hexulose 99.4 3.2E-11 6.9E-16 106.4 19.0 178 46-271 16-205 (206)
76 TIGR00262 trpA tryptophan synt 99.4 2.2E-11 4.8E-16 111.2 18.5 181 46-257 28-232 (256)
77 PRK11840 bifunctional sulfur c 99.4 8E-12 1.7E-16 115.8 15.5 175 107-284 100-310 (326)
78 PF03060 NMO: Nitronate monoox 99.4 1.7E-11 3.8E-16 115.9 17.9 196 36-274 16-240 (330)
79 cd00452 KDPG_aldolase KDPG and 99.4 4.5E-11 9.9E-16 104.4 19.1 154 46-256 20-175 (190)
80 PRK08999 hypothetical protein; 99.4 1.3E-11 2.7E-16 115.8 15.6 164 46-256 148-312 (312)
81 CHL00200 trpA tryptophan synth 99.4 4.1E-11 8.9E-16 109.6 18.3 180 46-257 33-236 (263)
82 PLN02591 tryptophan synthase 99.4 4.6E-11 1E-15 108.4 18.1 180 46-257 20-223 (250)
83 cd00958 DhnA Class I fructose- 99.3 2.6E-11 5.7E-16 109.2 14.6 184 43-272 21-234 (235)
84 PRK07028 bifunctional hexulose 99.3 1.9E-10 4.1E-15 112.6 20.4 183 46-275 20-213 (430)
85 PRK13125 trpA tryptophan synth 99.3 2E-10 4.3E-15 104.3 19.0 174 46-257 22-219 (244)
86 TIGR01182 eda Entner-Doudoroff 99.3 8.7E-10 1.9E-14 97.1 21.2 157 46-259 24-183 (204)
87 PRK08005 epimerase; Validated 99.3 5.9E-10 1.3E-14 98.6 19.8 181 46-268 17-207 (210)
88 PRK10415 tRNA-dihydrouridine s 99.3 5.7E-11 1.2E-15 111.9 14.1 153 46-269 81-241 (321)
89 PF01207 Dus: Dihydrouridine s 99.3 2.1E-11 4.6E-16 114.3 11.0 154 46-270 70-231 (309)
90 COG0159 TrpA Tryptophan syntha 99.3 3.1E-10 6.8E-15 102.8 16.7 180 46-257 35-238 (265)
91 PRK13111 trpA tryptophan synth 99.3 4.2E-10 9E-15 102.8 17.6 180 46-258 30-234 (258)
92 PRK08091 ribulose-phosphate 3- 99.3 1.5E-09 3.3E-14 97.0 20.8 185 46-272 29-227 (228)
93 PRK10550 tRNA-dihydrouridine s 99.2 2.1E-10 4.5E-15 107.6 15.8 150 46-266 79-238 (312)
94 PRK06843 inosine 5-monophospha 99.2 8.4E-10 1.8E-14 106.2 20.0 125 105-259 156-292 (404)
95 PTZ00170 D-ribulose-5-phosphat 99.2 6.1E-10 1.3E-14 100.1 17.8 186 46-274 23-223 (228)
96 PRK09722 allulose-6-phosphate 99.2 2.7E-09 5.8E-14 95.7 21.7 189 46-274 19-221 (229)
97 COG0269 SgbH 3-hexulose-6-phos 99.2 1.9E-09 4E-14 94.5 19.6 162 81-275 44-215 (217)
98 cd04743 NPD_PKS 2-Nitropropane 99.2 8.3E-10 1.8E-14 103.2 18.3 182 37-260 8-210 (320)
99 TIGR00742 yjbN tRNA dihydrouri 99.2 3.3E-10 7.2E-15 106.5 15.7 159 46-269 71-240 (318)
100 PRK05458 guanosine 5'-monophos 99.2 8.6E-10 1.9E-14 103.6 17.7 176 42-259 48-237 (326)
101 PRK14057 epimerase; Provisiona 99.2 4.3E-09 9.4E-14 95.2 21.6 187 46-274 36-243 (254)
102 cd00381 IMPDH IMPDH: The catal 99.2 1.1E-09 2.5E-14 103.3 18.2 184 37-260 40-234 (325)
103 COG2070 Dioxygenases related t 99.2 5E-10 1.1E-14 105.9 15.3 197 37-274 20-234 (336)
104 KOG2335 tRNA-dihydrouridine sy 99.2 8.2E-10 1.8E-14 103.0 15.9 171 28-276 74-267 (358)
105 cd04724 Tryptophan_synthase_al 99.2 1.2E-09 2.5E-14 99.1 16.7 178 46-257 18-220 (242)
106 TIGR00737 nifR3_yhdG putative 99.2 7.8E-10 1.7E-14 104.2 15.9 151 46-267 79-237 (319)
107 cd00405 PRAI Phosphoribosylant 99.2 2.6E-09 5.7E-14 94.1 17.9 182 42-270 6-201 (203)
108 PF00290 Trp_syntA: Tryptophan 99.2 1.1E-09 2.5E-14 99.7 15.8 195 45-272 27-251 (259)
109 TIGR00736 nifR3_rel_arch TIM-b 99.2 6.4E-10 1.4E-14 99.7 13.9 135 47-258 85-226 (231)
110 PRK06015 keto-hydroxyglutarate 99.1 1.3E-08 2.7E-13 89.5 21.1 156 46-258 20-178 (201)
111 PF00478 IMPDH: IMP dehydrogen 99.1 1.8E-09 4E-14 102.0 16.4 178 41-259 47-247 (352)
112 PF03437 BtpA: BtpA family; I 99.1 7.9E-09 1.7E-13 93.8 19.9 182 46-273 33-253 (254)
113 cd04722 TIM_phosphate_binding 99.1 3.3E-09 7.1E-14 91.1 16.4 174 45-253 15-200 (200)
114 PF01081 Aldolase: KDPG and KH 99.1 2.2E-09 4.8E-14 93.9 15.3 158 45-259 23-183 (196)
115 PLN02274 inosine-5'-monophosph 99.1 1.2E-09 2.5E-14 108.7 14.8 130 104-259 250-387 (505)
116 COG0434 SgcQ Predicted TIM-bar 99.1 4.3E-09 9.4E-14 93.0 16.6 189 46-275 38-260 (263)
117 PRK11815 tRNA-dihydrouridine s 99.1 2E-09 4.4E-14 102.0 15.7 161 46-269 81-250 (333)
118 PRK07565 dihydroorotate dehydr 99.1 5E-10 1.1E-14 106.2 10.7 181 46-290 118-304 (334)
119 PRK07114 keto-hydroxyglutarate 99.1 1.7E-08 3.8E-13 90.0 19.9 158 46-259 31-195 (222)
120 PRK13307 bifunctional formalde 99.1 1.1E-08 2.3E-13 98.4 19.4 155 81-272 214-378 (391)
121 cd04739 DHOD_like Dihydroorota 99.1 7.3E-10 1.6E-14 104.6 11.2 181 46-289 116-301 (325)
122 PRK05096 guanosine 5'-monophos 99.1 5.4E-09 1.2E-13 97.5 16.3 178 41-259 56-249 (346)
123 PRK05718 keto-hydroxyglutarate 99.1 3.4E-08 7.4E-13 87.6 20.8 158 46-259 31-190 (212)
124 TIGR01305 GMP_reduct_1 guanosi 99.0 1.6E-08 3.5E-13 94.4 18.1 178 41-259 55-248 (343)
125 KOG3111 D-ribulose-5-phosphate 99.0 3.7E-08 8E-13 84.4 18.1 189 46-276 21-221 (224)
126 TIGR00259 thylakoid_BtpA membr 99.0 5.3E-08 1.1E-12 88.5 20.3 189 46-274 32-254 (257)
127 TIGR01304 IMP_DH_rel_2 IMP deh 99.0 1.2E-08 2.5E-13 97.5 16.7 144 82-259 123-291 (369)
128 PRK07807 inosine 5-monophospha 99.0 3.6E-09 7.9E-14 104.5 13.2 126 105-259 230-366 (479)
129 cd02940 DHPD_FMN Dihydropyrimi 99.0 1.1E-08 2.3E-13 95.7 14.9 158 46-260 117-290 (299)
130 PF00834 Ribul_P_3_epim: Ribul 99.0 7.5E-09 1.6E-13 91.2 13.0 174 45-258 15-200 (201)
131 PRK08318 dihydropyrimidine deh 99.0 4.1E-09 8.8E-14 102.9 12.1 185 46-289 117-317 (420)
132 TIGR01037 pyrD_sub1_fam dihydr 99.0 1.6E-08 3.6E-13 94.3 15.7 75 210-289 223-297 (300)
133 PRK07226 fructose-bisphosphate 99.0 1.2E-07 2.6E-12 87.2 21.0 69 211-281 186-260 (267)
134 cd04742 NPD_FabD 2-Nitropropan 99.0 5E-08 1.1E-12 94.3 18.8 181 37-260 19-256 (418)
135 COG0800 Eda 2-keto-3-deoxy-6-p 99.0 9E-08 2E-12 83.9 18.6 156 46-258 29-187 (211)
136 TIGR01949 AroFGH_arch predicte 99.0 5.2E-08 1.1E-12 89.1 17.8 194 28-278 21-253 (258)
137 cd02809 alpha_hydroxyacid_oxid 99.0 6.9E-08 1.5E-12 90.2 18.9 165 45-258 84-262 (299)
138 PF04481 DUF561: Protein of un 99.0 8.8E-08 1.9E-12 83.7 17.9 185 46-273 31-235 (242)
139 cd02911 arch_FMN Archeal FMN-b 98.9 2.3E-08 5E-13 90.1 14.6 128 46-254 89-222 (233)
140 PRK08649 inosine 5-monophospha 98.9 2.3E-08 4.9E-13 95.8 15.1 190 37-259 53-292 (368)
141 TIGR01302 IMP_dehydrog inosine 98.9 1.8E-08 3.8E-13 99.3 14.3 129 104-260 226-364 (450)
142 cd02801 DUS_like_FMN Dihydrour 98.9 3.6E-08 7.8E-13 88.2 15.0 148 46-265 71-226 (231)
143 TIGR01303 IMP_DH_rel_1 IMP deh 98.9 1.7E-08 3.7E-13 99.7 12.8 132 105-259 228-364 (475)
144 PRK06806 fructose-bisphosphate 98.9 3.5E-07 7.6E-12 84.6 20.5 188 47-271 34-247 (281)
145 PRK07259 dihydroorotate dehydr 98.9 2.5E-08 5.4E-13 93.1 13.0 181 46-289 108-297 (301)
146 TIGR01306 GMP_reduct_2 guanosi 98.9 1.6E-07 3.4E-12 88.1 17.4 176 42-259 45-234 (321)
147 cd02810 DHOD_DHPD_FMN Dihydroo 98.9 7E-08 1.5E-12 89.5 15.0 54 209-264 229-285 (289)
148 PTZ00314 inosine-5'-monophosph 98.8 4.8E-08 1E-12 97.1 14.4 125 105-259 244-380 (495)
149 cd04740 DHOD_1B_like Dihydroor 98.8 4E-07 8.7E-12 84.8 18.4 181 89-286 86-291 (296)
150 TIGR01859 fruc_bis_ald_ fructo 98.8 7.8E-07 1.7E-11 82.4 19.9 178 46-257 31-235 (282)
151 PRK05567 inosine 5'-monophosph 98.8 1.5E-07 3.2E-12 93.7 14.5 126 104-259 230-367 (486)
152 COG1830 FbaB DhnA-type fructos 98.8 7.2E-07 1.5E-11 80.7 17.2 192 27-277 26-262 (265)
153 PLN02495 oxidoreductase, actin 98.7 5E-08 1.1E-12 93.8 9.6 197 46-294 131-339 (385)
154 TIGR02814 pfaD_fam PfaD family 98.7 1.2E-06 2.6E-11 85.4 19.1 179 37-260 24-261 (444)
155 PRK07315 fructose-bisphosphate 98.7 2.7E-06 5.8E-11 79.2 20.4 190 47-272 34-250 (293)
156 cd04741 DHOD_1A_like Dihydroor 98.7 2E-07 4.3E-12 87.0 11.4 52 210-263 230-284 (294)
157 PRK04169 geranylgeranylglycery 98.6 2.4E-06 5.1E-11 76.8 17.4 61 207-271 169-230 (232)
158 PRK05437 isopentenyl pyrophosp 98.6 8.2E-07 1.8E-11 84.8 15.3 190 45-258 80-296 (352)
159 PRK08227 autoinducer 2 aldolas 98.6 3.8E-06 8.3E-11 76.8 18.6 203 22-286 21-260 (264)
160 COG0167 PyrD Dihydroorotate de 98.6 1.6E-07 3.4E-12 87.6 8.9 182 46-290 113-306 (310)
161 PRK13306 ulaD 3-keto-L-gulonat 98.6 1.5E-06 3.2E-11 77.5 14.9 145 128-274 45-213 (216)
162 PRK06852 aldolase; Validated 98.6 7.8E-06 1.7E-10 76.1 19.6 210 20-283 28-298 (304)
163 KOG4175 Tryptophan synthase al 98.6 1.5E-06 3.3E-11 75.2 13.6 179 46-257 36-240 (268)
164 PRK05286 dihydroorotate dehydr 98.6 3.5E-07 7.6E-12 87.1 9.8 55 209-265 275-332 (344)
165 PRK07107 inosine 5-monophospha 98.5 1.3E-06 2.8E-11 87.0 13.4 126 104-259 244-388 (502)
166 cd04738 DHOD_2_like Dihydrooro 98.5 6.3E-07 1.4E-11 84.8 10.5 52 209-262 266-320 (327)
167 cd02803 OYE_like_FMN_family Ol 98.5 3.9E-06 8.5E-11 79.1 15.6 55 209-265 269-324 (327)
168 TIGR02151 IPP_isom_2 isopenten 98.5 1E-06 2.2E-11 83.6 10.9 45 212-258 244-289 (333)
169 PRK02506 dihydroorotate dehydr 98.5 3.1E-07 6.6E-12 86.3 7.0 76 210-289 228-305 (310)
170 PRK13813 orotidine 5'-phosphat 98.5 9.7E-06 2.1E-10 72.0 16.2 46 228-274 167-214 (215)
171 cd04736 MDH_FMN Mandelate dehy 98.5 2E-06 4.3E-11 82.0 12.1 98 128-257 226-323 (361)
172 cd02922 FCB2_FMN Flavocytochro 98.4 2.3E-05 5E-10 74.6 18.7 89 139-259 213-307 (344)
173 cd02811 IDI-2_FMN Isopentenyl- 98.4 6.6E-06 1.4E-10 77.9 14.8 194 44-258 71-290 (326)
174 TIGR02708 L_lactate_ox L-lacta 98.4 3.1E-06 6.6E-11 80.9 12.3 100 125-258 216-318 (367)
175 PLN02535 glycolate oxidase 98.4 3.5E-06 7.7E-11 80.5 12.3 100 125-258 211-313 (364)
176 TIGR00078 nadC nicotinate-nucl 98.4 2.9E-06 6.3E-11 77.9 11.1 90 127-258 165-255 (265)
177 cd04734 OYE_like_3_FMN Old yel 98.4 7.6E-06 1.6E-10 78.0 14.3 55 209-265 273-328 (343)
178 KOG0623 Glutamine amidotransfe 98.4 1.6E-05 3.6E-10 73.8 15.3 215 45-270 272-533 (541)
179 cd01572 QPRTase Quinolinate ph 98.4 3.9E-06 8.5E-11 77.2 11.3 90 127-259 169-261 (268)
180 PRK08072 nicotinate-nucleotide 98.4 5E-06 1.1E-10 76.7 11.7 90 126-258 174-266 (277)
181 PLN02826 dihydroorotate dehydr 98.4 3.4E-06 7.4E-11 81.9 11.1 76 210-289 328-405 (409)
182 PRK13523 NADPH dehydrogenase N 98.3 1.3E-05 2.7E-10 76.2 14.8 55 209-265 263-318 (337)
183 cd04735 OYE_like_4_FMN Old yel 98.3 6.4E-06 1.4E-10 78.8 12.5 54 211-266 272-327 (353)
184 cd01568 QPRTase_NadC Quinolina 98.3 4.7E-06 1E-10 76.7 11.1 94 126-258 167-261 (269)
185 PLN02979 glycolate oxidase 98.3 3.8E-05 8.3E-10 73.1 17.4 95 130-257 215-312 (366)
186 TIGR01768 GGGP-family geranylg 98.3 3.2E-05 6.9E-10 69.0 15.4 49 208-258 165-214 (223)
187 PRK05742 nicotinate-nucleotide 98.3 6.8E-06 1.5E-10 75.8 11.4 90 127-259 177-268 (277)
188 cd01573 modD_like ModD; Quinol 98.3 4.2E-06 9.1E-11 77.2 9.9 92 127-258 171-263 (272)
189 PRK05848 nicotinate-nucleotide 98.3 7.4E-06 1.6E-10 75.4 11.4 96 125-259 167-264 (273)
190 PRK07428 nicotinate-nucleotide 98.3 7.1E-06 1.5E-10 76.1 11.3 95 126-259 182-278 (288)
191 cd04737 LOX_like_FMN L-Lactate 98.3 6.3E-06 1.4E-10 78.5 11.1 96 130-258 213-311 (351)
192 TIGR01036 pyrD_sub2 dihydrooro 98.3 1.5E-06 3.3E-11 82.5 6.8 51 210-262 275-328 (335)
193 PRK06801 hypothetical protein; 98.3 0.00019 4E-09 66.7 20.4 175 46-257 33-238 (286)
194 PLN02493 probable peroxisomal 98.3 9.3E-06 2E-10 77.6 11.6 99 125-257 212-313 (367)
195 TIGR01769 GGGP geranylgeranylg 98.2 3.9E-05 8.5E-10 67.7 14.5 43 208-252 163-205 (205)
196 PF01070 FMN_dh: FMN-dependent 98.2 1.3E-05 2.8E-10 76.7 10.6 100 125-258 213-315 (356)
197 PRK11197 lldD L-lactate dehydr 98.2 1.8E-05 3.9E-10 76.0 11.5 96 130-258 237-335 (381)
198 COG1646 Predicted phosphate-bi 98.2 0.00016 3.4E-09 64.3 16.4 57 209-272 181-237 (240)
199 cd03332 LMO_FMN L-Lactate 2-mo 98.2 1.9E-05 4.2E-10 75.9 11.6 96 129-257 244-342 (383)
200 cd02933 OYE_like_FMN Old yello 98.1 9.3E-05 2E-09 70.4 15.0 54 209-265 273-327 (338)
201 cd00945 Aldolase_Class_I Class 98.1 0.00024 5.2E-09 61.3 16.4 153 46-252 17-201 (201)
202 PF01180 DHO_dh: Dihydroorotat 98.1 3.8E-06 8.3E-11 78.2 5.3 59 210-273 231-292 (295)
203 PRK04128 1-(5-phosphoribosyl)- 98.1 1.4E-05 3E-10 71.9 8.2 47 208-256 60-106 (228)
204 PRK09250 fructose-bisphosphate 98.1 0.00026 5.5E-09 66.9 16.9 203 26-263 68-329 (348)
205 PRK00230 orotidine 5'-phosphat 98.1 0.00011 2.5E-09 66.0 14.0 45 228-273 173-228 (230)
206 cd02932 OYE_YqiM_FMN Old yello 98.1 0.00015 3.2E-09 68.9 15.4 53 210-264 279-332 (336)
207 PRK01222 N-(5'-phosphoribosyl) 98.0 0.0023 4.9E-08 56.9 21.8 185 42-274 10-207 (210)
208 KOG2550 IMP dehydrogenase/GMP 98.0 2.6E-05 5.6E-10 74.1 9.7 129 106-258 255-389 (503)
209 PF01729 QRPTase_C: Quinolinat 98.0 3.4E-05 7.4E-10 66.2 9.2 95 126-259 66-162 (169)
210 PRK13305 sgbH 3-keto-L-gulonat 98.0 9.3E-05 2E-09 66.1 12.3 144 128-274 45-213 (218)
211 TIGR00735 hisF imidazoleglycer 98.0 2.5E-05 5.5E-10 71.3 8.8 49 208-258 61-109 (254)
212 cd02931 ER_like_FMN Enoate red 98.0 0.0002 4.3E-09 69.3 14.8 54 210-265 294-348 (382)
213 COG0135 TrpF Phosphoribosylant 97.9 0.0029 6.4E-08 55.9 20.2 186 42-274 9-207 (208)
214 cd02930 DCR_FMN 2,4-dienoyl-Co 97.9 0.00017 3.7E-09 69.0 12.9 54 210-265 265-319 (353)
215 TIGR01334 modD putative molybd 97.9 0.00042 9.2E-09 63.9 14.9 93 125-256 174-267 (277)
216 cd04733 OYE_like_2_FMN Old yel 97.9 0.0003 6.5E-09 66.9 14.2 55 210-266 281-336 (338)
217 PRK13958 N-(5'-phosphoribosyl) 97.9 0.0034 7.4E-08 55.6 19.9 188 42-275 8-206 (207)
218 PRK07896 nicotinate-nucleotide 97.9 0.00015 3.3E-09 67.2 11.1 96 125-259 185-281 (289)
219 cd04731 HisF The cyclase subun 97.9 6.8E-05 1.5E-09 67.8 8.6 51 208-260 58-108 (243)
220 PRK08185 hypothetical protein; 97.8 0.0045 9.7E-08 57.4 20.6 177 46-257 28-233 (283)
221 COG1411 Uncharacterized protei 97.8 0.0012 2.6E-08 57.4 15.4 58 207-266 167-224 (229)
222 cd02929 TMADH_HD_FMN Trimethyl 97.8 0.00064 1.4E-08 65.5 15.5 55 209-265 277-332 (370)
223 KOG0538 Glycolate oxidase [Ene 97.8 0.00012 2.5E-09 67.5 9.6 95 131-258 216-313 (363)
224 PRK08385 nicotinate-nucleotide 97.8 0.00016 3.5E-09 66.7 10.7 97 126-259 169-266 (278)
225 cd02812 PcrB_like PcrB_like pr 97.8 3.7E-05 7.9E-10 68.5 5.9 49 208-258 161-210 (219)
226 PRK02083 imidazole glycerol ph 97.8 0.00015 3.4E-09 66.0 9.9 52 207-260 60-111 (253)
227 PRK06978 nicotinate-nucleotide 97.8 0.00033 7.1E-09 65.0 12.0 95 125-260 191-285 (294)
228 PF09370 TIM-br_sig_trns: TIM- 97.8 0.0018 3.8E-08 59.0 16.2 193 45-258 25-252 (268)
229 PRK09016 quinolinate phosphori 97.8 0.00034 7.4E-09 65.0 11.8 93 126-259 195-287 (296)
230 PRK08255 salicylyl-CoA 5-hydro 97.7 0.00083 1.8E-08 70.6 15.7 49 211-261 677-726 (765)
231 PRK09427 bifunctional indole-3 97.7 0.0058 1.3E-07 60.3 20.4 182 42-275 264-454 (454)
232 PRK06559 nicotinate-nucleotide 97.7 0.00056 1.2E-08 63.4 11.9 94 125-259 182-276 (290)
233 cd02808 GltS_FMN Glutamate syn 97.7 0.00037 8.1E-09 67.6 11.0 106 128-258 203-320 (392)
234 PF01884 PcrB: PcrB family; I 97.7 4.4E-05 9.6E-10 68.4 4.0 56 210-267 171-226 (230)
235 PRK06096 molybdenum transport 97.6 0.0013 2.7E-08 61.0 13.5 93 126-258 176-269 (284)
236 PRK00507 deoxyribose-phosphate 97.6 0.0011 2.3E-08 59.4 12.6 42 210-253 166-209 (221)
237 PF01791 DeoC: DeoC/LacD famil 97.6 0.00053 1.2E-08 61.8 10.8 163 46-257 23-235 (236)
238 PLN02363 phosphoribosylanthran 97.6 0.023 4.9E-07 52.0 21.3 186 42-274 54-253 (256)
239 PRK06106 nicotinate-nucleotide 97.6 0.00064 1.4E-08 62.8 11.3 92 126-258 180-272 (281)
240 COG1902 NemA NADH:flavin oxido 97.6 0.0014 3.1E-08 62.8 13.9 55 211-267 278-333 (363)
241 PRK06543 nicotinate-nucleotide 97.6 0.00085 1.9E-08 62.0 11.6 93 126-259 179-272 (281)
242 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00064 1.4E-08 61.4 10.5 49 208-258 63-111 (234)
243 cd04732 HisA HisA. Phosphorib 97.6 0.00056 1.2E-08 61.2 9.9 50 208-259 60-109 (234)
244 cd02809 alpha_hydroxyacid_oxid 97.5 0.0019 4.2E-08 60.3 13.6 112 46-166 133-256 (299)
245 PRK00748 1-(5-phosphoribosyl)- 97.5 0.00038 8.3E-09 62.3 8.2 50 208-259 61-110 (233)
246 PRK07998 gatY putative fructos 97.5 0.02 4.3E-07 53.1 19.6 174 46-257 33-234 (283)
247 PRK01033 imidazole glycerol ph 97.5 0.00046 9.9E-09 63.2 8.6 51 207-259 60-110 (258)
248 cd00956 Transaldolase_FSA Tran 97.5 0.021 4.6E-07 50.7 18.9 190 41-272 5-209 (211)
249 PRK06552 keto-hydroxyglutarate 97.4 0.0061 1.3E-07 54.2 14.8 124 83-251 6-135 (213)
250 PRK13585 1-(5-phosphoribosyl)- 97.4 0.0007 1.5E-08 61.0 8.7 50 209-260 64-113 (241)
251 PRK11572 copper homeostasis pr 97.4 0.023 5E-07 51.6 18.2 165 43-252 9-198 (248)
252 TIGR03572 WbuZ glycosyl amidat 97.4 0.00072 1.6E-08 60.7 8.5 51 207-259 60-110 (232)
253 TIGR01182 eda Entner-Doudoroff 97.4 0.006 1.3E-07 53.9 13.8 114 93-251 11-127 (204)
254 COG0107 HisF Imidazoleglycerol 97.4 0.0011 2.4E-08 58.9 9.0 50 209-260 62-111 (256)
255 TIGR02129 hisA_euk phosphoribo 97.4 0.0007 1.5E-08 61.6 8.0 71 209-297 64-136 (253)
256 COG0157 NadC Nicotinate-nucleo 97.4 0.0029 6.2E-08 58.0 11.7 96 125-259 173-269 (280)
257 TIGR01740 pyrF orotidine 5'-ph 97.3 0.0018 3.9E-08 57.5 10.3 137 128-268 40-212 (213)
258 PRK08649 inosine 5-monophospha 97.3 0.006 1.3E-07 58.7 14.3 40 211-254 178-217 (368)
259 PRK06015 keto-hydroxyglutarate 97.3 0.0061 1.3E-07 53.7 13.2 102 105-251 20-123 (201)
260 PF03932 CutC: CutC family; I 97.3 0.025 5.4E-07 49.9 16.7 163 43-250 8-197 (201)
261 PLN02716 nicotinate-nucleotide 97.3 0.0036 7.8E-08 58.5 11.8 101 125-258 185-296 (308)
262 PRK05718 keto-hydroxyglutarate 97.3 0.012 2.5E-07 52.4 14.6 123 84-251 9-134 (212)
263 PRK14024 phosphoribosyl isomer 97.3 0.0012 2.6E-08 59.8 8.5 51 208-260 62-112 (241)
264 cd04747 OYE_like_5_FMN Old yel 97.2 0.0071 1.5E-07 58.1 13.3 55 209-265 268-341 (361)
265 cd04723 HisA_HisF Phosphoribos 97.2 0.0023 4.9E-08 57.7 9.4 49 208-258 65-113 (233)
266 PRK07114 keto-hydroxyglutarate 97.2 0.015 3.3E-07 52.0 14.4 126 81-251 6-138 (222)
267 cd00377 ICL_PEPM Members of th 97.2 0.089 1.9E-06 47.7 19.6 174 41-257 15-231 (243)
268 PF04131 NanE: Putative N-acet 97.2 0.015 3.3E-07 50.5 13.7 109 45-167 54-174 (192)
269 cd04740 DHOD_1B_like Dihydroor 97.2 0.0076 1.6E-07 56.0 12.9 117 46-166 106-260 (296)
270 PF01081 Aldolase: KDPG and KH 97.2 0.0059 1.3E-07 53.6 11.2 114 93-251 11-127 (196)
271 PLN02617 imidazole glycerol ph 97.2 0.0025 5.4E-08 64.2 10.0 84 209-301 302-398 (538)
272 PF00697 PRAI: N-(5'phosphorib 97.2 0.0044 9.5E-08 54.4 10.5 182 42-270 6-196 (197)
273 COG0149 TpiA Triosephosphate i 97.1 0.0059 1.3E-07 55.4 11.3 47 221-270 202-249 (251)
274 PRK13586 1-(5-phosphoribosyl)- 97.1 0.0028 6.2E-08 57.1 9.3 48 209-258 61-108 (232)
275 PRK12737 gatY tagatose-bisphos 97.1 0.11 2.4E-06 48.3 20.0 177 46-257 33-237 (284)
276 TIGR00126 deoC deoxyribose-pho 97.1 0.0054 1.2E-07 54.5 10.7 31 221-253 175-205 (211)
277 TIGR01919 hisA-trpF 1-(5-phosp 97.1 0.0014 3.1E-08 59.4 7.2 50 208-259 61-110 (243)
278 COG0106 HisA Phosphoribosylfor 97.1 0.0038 8.3E-08 56.1 9.6 70 209-299 63-133 (241)
279 TIGR01858 tag_bisphos_ald clas 97.1 0.12 2.7E-06 47.9 19.9 176 47-257 32-235 (282)
280 PRK14114 1-(5-phosphoribosyl)- 97.1 0.0032 7E-08 57.1 9.3 48 209-259 62-109 (241)
281 PRK12738 kbaY tagatose-bisphos 97.1 0.099 2.1E-06 48.6 19.3 176 47-257 34-237 (286)
282 PRK04180 pyridoxal biosynthesi 97.1 0.0085 1.8E-07 55.3 12.0 139 5-168 56-236 (293)
283 PRK09195 gatY tagatose-bisphos 97.1 0.12 2.5E-06 48.1 19.5 176 47-257 34-237 (284)
284 TIGR00007 phosphoribosylformim 97.1 0.0041 8.9E-08 55.6 9.6 48 209-258 60-107 (230)
285 PF01645 Glu_synthase: Conserv 97.1 0.0026 5.7E-08 60.9 8.7 120 113-258 171-309 (368)
286 cd04725 OMP_decarboxylase_like 97.0 0.025 5.4E-07 50.4 14.2 159 81-267 39-215 (216)
287 TIGR01304 IMP_DH_rel_2 IMP deh 97.0 0.011 2.3E-07 56.9 12.4 161 37-253 50-217 (369)
288 cd02922 FCB2_FMN Flavocytochro 97.0 0.021 4.7E-07 54.4 14.2 87 79-166 200-300 (344)
289 PRK12857 fructose-1,6-bisphosp 97.0 0.2 4.3E-06 46.6 20.1 175 46-257 33-237 (284)
290 TIGR00167 cbbA ketose-bisphosp 97.0 0.17 3.8E-06 47.1 19.6 177 46-257 33-241 (288)
291 PRK10605 N-ethylmaleimide redu 96.9 0.023 5E-07 54.6 14.1 53 210-265 281-334 (362)
292 COG0800 Eda 2-keto-3-deoxy-6-p 96.9 0.024 5.2E-07 50.0 12.9 119 86-249 9-130 (211)
293 PRK05437 isopentenyl pyrophosp 96.9 0.016 3.4E-07 55.5 12.8 120 46-166 139-290 (352)
294 PRK07709 fructose-bisphosphate 96.9 0.22 4.7E-06 46.3 19.9 177 47-257 34-238 (285)
295 cd00959 DeoC 2-deoxyribose-5-p 96.9 0.053 1.2E-06 47.7 15.2 28 220-249 173-200 (203)
296 TIGR01302 IMP_dehydrog inosine 96.9 0.014 3E-07 57.8 12.5 124 33-166 213-356 (450)
297 PRK12656 fructose-6-phosphate 96.9 0.17 3.8E-06 45.3 18.3 189 41-273 6-214 (222)
298 PRK08610 fructose-bisphosphate 96.9 0.3 6.4E-06 45.5 20.3 178 46-257 33-238 (286)
299 COG1304 idi Isopentenyl diphos 96.9 0.0017 3.8E-08 62.1 5.7 97 129-258 209-308 (360)
300 PF00977 His_biosynth: Histidi 96.9 0.00086 1.9E-08 60.3 3.4 50 209-260 61-110 (229)
301 TIGR02317 prpB methylisocitrat 96.9 0.043 9.4E-07 51.0 14.7 174 42-258 20-235 (285)
302 cd00947 TBP_aldolase_IIB Tagat 96.8 0.28 6.1E-06 45.4 19.8 187 46-273 28-242 (276)
303 TIGR01306 GMP_reduct_2 guanosi 96.8 0.026 5.7E-07 53.2 13.3 124 91-252 33-165 (321)
304 COG0274 DeoC Deoxyribose-phosp 96.8 0.014 3E-07 51.9 10.7 41 211-253 171-213 (228)
305 PRK05096 guanosine 5'-monophos 96.8 0.019 4.2E-07 54.1 11.9 124 91-253 45-180 (346)
306 TIGR00875 fsa_talC_mipB fructo 96.8 0.21 4.6E-06 44.4 18.0 192 41-273 6-210 (213)
307 PF13714 PEP_mutase: Phosphoen 96.8 0.066 1.4E-06 48.5 14.9 172 41-257 15-224 (238)
308 TIGR01305 GMP_reduct_1 guanosi 96.8 0.02 4.4E-07 54.0 11.8 123 91-252 44-178 (343)
309 PRK12858 tagatose 1,6-diphosph 96.8 0.012 2.5E-07 56.1 10.4 49 211-261 231-285 (340)
310 cd02811 IDI-2_FMN Isopentenyl- 96.8 0.021 4.6E-07 54.0 12.2 86 82-167 168-285 (326)
311 PRK01362 putative translaldola 96.8 0.21 4.6E-06 44.4 17.7 192 41-273 6-210 (214)
312 PRK06843 inosine 5-monophospha 96.7 0.028 6.1E-07 54.6 13.0 40 210-252 182-222 (404)
313 PRK05458 guanosine 5'-monophos 96.7 0.042 9.1E-07 52.0 13.9 123 91-252 36-168 (326)
314 PLN02446 (5-phosphoribosyl)-5- 96.7 0.0071 1.5E-07 55.3 8.3 46 209-258 72-117 (262)
315 TIGR00736 nifR3_rel_arch TIM-b 96.7 0.0067 1.5E-07 54.6 8.0 85 27-120 134-219 (231)
316 PF00478 IMPDH: IMP dehydrogen 96.7 0.021 4.5E-07 54.5 11.5 169 91-298 36-244 (352)
317 cd00452 KDPG_aldolase KDPG and 96.7 0.11 2.3E-06 45.2 15.1 102 105-251 20-123 (190)
318 COG2513 PrpB PEP phosphonomuta 96.6 0.16 3.5E-06 46.9 16.4 176 40-258 23-240 (289)
319 PRK11320 prpB 2-methylisocitra 96.6 0.19 4.1E-06 46.9 16.7 174 42-258 24-240 (292)
320 PF01116 F_bP_aldolase: Fructo 96.6 0.25 5.3E-06 46.0 17.4 190 46-275 32-253 (287)
321 PTZ00314 inosine-5'-monophosph 96.5 0.034 7.4E-07 55.6 12.4 112 45-166 243-373 (495)
322 PRK00042 tpiA triosephosphate 96.5 0.047 1E-06 49.8 12.3 43 221-266 203-246 (250)
323 PRK10415 tRNA-dihydrouridine s 96.5 0.018 3.9E-07 54.4 9.7 88 28-120 134-223 (321)
324 TIGR00343 pyridoxal 5'-phospha 96.5 0.054 1.2E-06 49.9 12.3 140 4-168 48-230 (287)
325 cd04737 LOX_like_FMN L-Lactate 96.5 0.028 6.2E-07 53.7 10.9 86 80-166 209-305 (351)
326 TIGR00419 tim triosephosphate 96.5 0.065 1.4E-06 47.4 12.4 148 81-258 41-204 (205)
327 PRK07084 fructose-bisphosphate 96.5 0.51 1.1E-05 44.6 18.9 181 47-257 40-273 (321)
328 PRK14565 triosephosphate isome 96.5 0.055 1.2E-06 48.9 12.1 44 221-267 189-233 (237)
329 PRK13803 bifunctional phosphor 96.4 0.5 1.1E-05 48.6 20.4 188 42-274 10-214 (610)
330 PRK05283 deoxyribose-phosphate 96.4 0.045 9.7E-07 50.0 11.4 25 221-247 195-219 (257)
331 TIGR02319 CPEP_Pphonmut carbox 96.4 0.21 4.6E-06 46.6 16.0 176 41-258 22-239 (294)
332 cd04728 ThiG Thiazole synthase 96.4 0.032 6.9E-07 50.4 10.0 79 35-119 121-202 (248)
333 PRK02227 hypothetical protein; 96.4 0.65 1.4E-05 41.9 18.3 199 39-273 4-234 (238)
334 PRK05567 inosine 5'-monophosph 96.4 0.086 1.9E-06 52.7 14.2 113 44-166 229-360 (486)
335 KOG2333 Uncharacterized conser 96.4 0.051 1.1E-06 53.3 11.9 147 48-264 338-497 (614)
336 cd00381 IMPDH IMPDH: The catal 96.4 0.13 2.8E-06 48.7 14.7 124 91-252 33-163 (325)
337 PLN02979 glycolate oxidase 96.3 0.029 6.4E-07 53.6 10.1 87 80-167 211-308 (366)
338 cd06556 ICL_KPHMT Members of t 96.3 0.21 4.6E-06 45.2 15.3 101 41-146 18-132 (240)
339 TIGR01303 IMP_DH_rel_1 IMP deh 96.3 0.05 1.1E-06 54.2 12.0 112 45-168 227-359 (475)
340 PRK10550 tRNA-dihydrouridine s 96.3 0.021 4.6E-07 53.7 8.9 112 17-134 125-238 (312)
341 cd02911 arch_FMN Archeal FMN-b 96.3 0.036 7.8E-07 50.0 9.9 82 27-121 139-220 (233)
342 cd04736 MDH_FMN Mandelate dehy 96.3 0.037 8.1E-07 53.0 10.4 87 80-168 224-320 (361)
343 PRK10128 2-keto-3-deoxy-L-rham 96.2 0.42 9E-06 44.0 16.9 87 40-135 24-111 (267)
344 cd03332 LMO_FMN L-Lactate 2-mo 96.2 0.047 1E-06 52.8 11.0 87 79-166 240-337 (383)
345 cd04727 pdxS PdxS is a subunit 96.2 0.25 5.4E-06 45.6 14.8 135 8-167 50-226 (283)
346 PRK00208 thiG thiazole synthas 96.2 0.047 1E-06 49.4 10.0 79 35-119 121-202 (250)
347 PRK11197 lldD L-lactate dehydr 96.1 0.042 9.1E-07 53.1 9.9 87 80-167 233-330 (381)
348 PF00215 OMPdecase: Orotidine 96.1 0.028 6.1E-07 50.3 8.3 137 127-268 45-226 (226)
349 CHL00162 thiG thiamin biosynth 96.1 0.064 1.4E-06 48.6 10.3 80 33-119 133-216 (267)
350 PRK05835 fructose-bisphosphate 96.0 1.3 2.9E-05 41.5 20.0 178 47-257 33-260 (307)
351 PRK12653 fructose-6-phosphate 96.0 1 2.2E-05 40.2 18.2 192 41-273 6-212 (220)
352 cd00311 TIM Triosephosphate is 96.0 0.079 1.7E-06 48.1 10.9 37 221-260 199-236 (242)
353 PF05690 ThiG: Thiazole biosyn 96.0 0.05 1.1E-06 48.8 9.1 81 33-119 119-202 (247)
354 PRK14567 triosephosphate isome 96.0 0.18 3.9E-06 46.0 12.9 43 221-266 202-245 (253)
355 COG3142 CutC Uncharacterized p 96.0 1 2.3E-05 40.3 17.1 116 43-166 9-148 (241)
356 COG0042 tRNA-dihydrouridine sy 95.9 0.04 8.8E-07 52.1 8.9 95 18-120 130-227 (323)
357 PRK09140 2-dehydro-3-deoxy-6-p 95.9 0.56 1.2E-05 41.4 15.5 114 93-251 13-130 (206)
358 PRK10558 alpha-dehydro-beta-de 95.9 1.3 2.8E-05 40.5 18.4 95 30-135 10-112 (256)
359 PRK12655 fructose-6-phosphate 95.8 1.3 2.8E-05 39.7 18.1 193 41-274 6-213 (220)
360 PTZ00333 triosephosphate isome 95.8 0.26 5.7E-06 45.0 13.4 40 221-264 207-247 (255)
361 cd01571 NAPRTase_B Nicotinate 95.8 0.082 1.8E-06 49.6 10.4 35 224-259 246-280 (302)
362 COG0191 Fba Fructose/tagatose 95.8 1.6 3.4E-05 40.4 19.4 196 47-282 34-262 (286)
363 cd00331 IGPS Indole-3-glycerol 95.8 0.067 1.4E-06 47.4 9.2 58 209-272 60-117 (217)
364 TIGR00737 nifR3_yhdG putative 95.8 0.061 1.3E-06 50.7 9.4 101 28-133 132-235 (319)
365 PLN02429 triosephosphate isome 95.7 0.17 3.6E-06 47.6 11.7 43 221-266 263-306 (315)
366 TIGR03239 GarL 2-dehydro-3-deo 95.7 1.5 3.2E-05 39.9 17.7 88 37-135 15-105 (249)
367 PRK12376 putative translaldola 95.7 1.6 3.4E-05 39.5 18.0 173 41-257 11-204 (236)
368 PF04309 G3P_antiterm: Glycero 95.7 0.064 1.4E-06 46.2 8.2 127 81-253 34-170 (175)
369 COG2876 AroA 3-deoxy-D-arabino 95.6 0.52 1.1E-05 43.1 14.1 171 46-252 63-249 (286)
370 PLN02274 inosine-5'-monophosph 95.6 0.22 4.8E-06 50.0 13.0 111 45-166 250-380 (505)
371 PRK07455 keto-hydroxyglutarate 95.6 1.1 2.4E-05 38.9 15.8 126 81-251 3-131 (187)
372 PRK07807 inosine 5-monophospha 95.4 0.17 3.6E-06 50.5 11.5 112 45-166 229-359 (479)
373 COG3010 NanE Putative N-acetyl 95.4 1.8 3.8E-05 38.3 16.4 112 45-168 88-211 (229)
374 PRK13396 3-deoxy-7-phosphohept 95.4 1.4 3.1E-05 42.1 17.1 177 46-257 119-311 (352)
375 PRK13957 indole-3-glycerol-pho 95.4 0.42 9.2E-06 43.5 12.9 86 208-300 89-182 (247)
376 PF00701 DHDPS: Dihydrodipicol 95.4 2.1 4.6E-05 39.5 18.0 83 45-135 25-121 (289)
377 PRK09196 fructose-1,6-bisphosp 95.3 2.7 5.9E-05 40.1 18.9 179 47-257 34-282 (347)
378 COG5564 Predicted TIM-barrel e 95.3 0.85 1.8E-05 40.6 14.1 136 104-259 104-259 (276)
379 cd00408 DHDPS-like Dihydrodipi 95.3 2.2 4.9E-05 39.1 19.0 82 46-135 22-117 (281)
380 PRK13399 fructose-1,6-bisphosp 95.3 2.8 6E-05 40.1 19.5 179 47-257 34-282 (347)
381 cd02801 DUS_like_FMN Dihydrour 95.3 0.082 1.8E-06 47.0 8.0 88 28-120 124-212 (231)
382 PRK14905 triosephosphate isome 95.2 0.27 5.7E-06 47.2 11.6 53 221-276 213-266 (355)
383 TIGR02320 PEP_mutase phosphoen 95.2 1.1 2.4E-05 41.6 15.5 176 42-257 16-245 (285)
384 PRK11750 gltB glutamate syntha 95.2 0.16 3.5E-06 56.3 11.1 118 113-257 964-1101(1485)
385 COG0069 GltB Glutamate synthas 95.0 0.14 3.1E-06 50.6 9.3 121 113-257 271-408 (485)
386 PRK08508 biotin synthase; Prov 95.0 1.9 4E-05 39.9 16.3 209 46-271 47-269 (279)
387 TIGR01769 GGGP geranylgeranylg 95.0 0.17 3.7E-06 44.7 8.9 66 46-119 138-203 (205)
388 cd02812 PcrB_like PcrB_like pr 94.9 0.4 8.6E-06 42.9 11.2 66 47-123 140-207 (219)
389 PF04476 DUF556: Protein of un 94.9 2.7 5.9E-05 37.8 17.6 185 40-260 5-216 (235)
390 cd06557 KPHMT-like Ketopantoat 94.9 1.2 2.6E-05 40.7 14.5 90 41-135 18-125 (254)
391 COG2022 ThiG Uncharacterized e 94.9 0.21 4.6E-06 44.7 9.1 79 34-119 127-209 (262)
392 cd00516 PRTase_typeII Phosphor 94.8 0.24 5.2E-06 45.6 10.0 34 224-258 240-273 (281)
393 PRK08673 3-deoxy-7-phosphohept 94.8 2.6 5.6E-05 40.1 16.9 177 46-258 111-303 (335)
394 PF00724 Oxidored_FMN: NADH:fl 94.8 0.04 8.6E-07 52.5 4.7 55 210-266 280-335 (341)
395 PF01207 Dus: Dihydrouridine s 94.6 0.056 1.2E-06 50.8 5.2 88 28-120 123-212 (309)
396 COG4981 Enoyl reductase domain 94.5 0.83 1.8E-05 45.7 13.1 88 212-301 204-313 (717)
397 PRK01130 N-acetylmannosamine-6 94.5 0.3 6.5E-06 43.3 9.5 90 40-132 124-214 (221)
398 PRK13397 3-deoxy-7-phosphohept 94.5 3.7 8E-05 37.4 16.8 175 46-255 33-222 (250)
399 TIGR03151 enACPred_II putative 94.5 0.18 3.8E-06 47.4 8.2 74 40-119 114-188 (307)
400 COG0269 SgbH 3-hexulose-6-phos 94.3 0.3 6.5E-06 43.3 8.7 60 128-187 45-108 (217)
401 COG0329 DapA Dihydrodipicolina 94.3 4.7 0.0001 37.7 18.5 66 46-119 29-104 (299)
402 PRK00311 panB 3-methyl-2-oxobu 94.3 3.2 7E-05 38.1 15.8 90 41-135 21-128 (264)
403 TIGR02134 transald_staph trans 94.3 4 8.8E-05 36.9 17.8 173 41-257 11-204 (236)
404 TIGR02321 Pphn_pyruv_hyd phosp 94.2 3 6.5E-05 38.9 15.7 88 30-120 7-109 (290)
405 COG0502 BioB Biotin synthase a 94.2 1.8 4E-05 41.0 14.3 69 46-119 91-159 (335)
406 cd00951 KDGDH 5-dehydro-4-deox 94.2 4.7 0.0001 37.4 19.1 83 46-135 25-119 (289)
407 PRK02227 hypothetical protein; 94.2 4.2 9.1E-05 36.7 16.3 144 103-276 9-180 (238)
408 PLN02411 12-oxophytodienoate r 94.1 0.1 2.2E-06 50.7 6.0 54 211-267 303-357 (391)
409 PRK06256 biotin synthase; Vali 94.0 5.5 0.00012 37.6 17.8 204 46-271 98-319 (336)
410 COG2089 SpsE Sialic acid synth 94.0 2.1 4.5E-05 40.3 14.0 121 138-298 102-228 (347)
411 PLN02561 triosephosphate isome 94.0 0.68 1.5E-05 42.3 10.8 34 221-257 204-238 (253)
412 cd02940 DHPD_FMN Dihydropyrimi 94.0 0.19 4.2E-06 46.9 7.4 89 28-119 169-279 (299)
413 COG1954 GlpP Glycerol-3-phosph 93.9 3.7 7.9E-05 35.2 14.7 150 44-250 12-171 (181)
414 cd03174 DRE_TIM_metallolyase D 93.9 4.6 0.0001 36.3 16.9 71 46-121 23-94 (265)
415 PRK11320 prpB 2-methylisocitra 93.9 1.2 2.7E-05 41.5 12.5 119 139-278 17-149 (292)
416 PRK08662 nicotinate phosphorib 93.9 0.6 1.3E-05 44.6 10.6 34 224-259 262-295 (343)
417 PRK11840 bifunctional sulfur c 93.9 0.61 1.3E-05 44.0 10.3 79 35-119 195-276 (326)
418 TIGR02313 HpaI-NOT-DapA 2,4-di 93.9 5.5 0.00012 37.0 19.0 67 45-119 24-100 (294)
419 PRK12595 bifunctional 3-deoxy- 93.8 6.1 0.00013 38.0 17.3 175 46-255 136-325 (360)
420 KOG2334 tRNA-dihydrouridine sy 93.7 0.9 2E-05 44.1 11.4 155 48-276 100-275 (477)
421 TIGR00742 yjbN tRNA dihydrouri 93.7 0.39 8.4E-06 45.4 8.8 106 27-134 123-237 (318)
422 TIGR00284 dihydropteroate synt 93.6 9 0.0002 38.5 20.1 82 46-136 169-250 (499)
423 PF03740 PdxJ: Pyridoxal phosp 93.6 2.6 5.6E-05 38.1 13.4 186 45-272 25-237 (239)
424 TIGR01768 GGGP-family geranylg 93.4 0.89 1.9E-05 40.7 10.3 57 55-119 149-206 (223)
425 cd04729 NanE N-acetylmannosami 93.4 0.43 9.4E-06 42.3 8.3 80 41-123 129-209 (219)
426 PRK07107 inosine 5-monophospha 93.4 1.3 2.9E-05 44.4 12.6 113 45-166 244-381 (502)
427 cd04722 TIM_phosphate_binding 93.4 1.5 3.2E-05 36.9 11.3 109 48-166 77-199 (200)
428 PF04476 DUF556: Protein of un 93.3 5.9 0.00013 35.7 16.3 143 103-275 9-179 (235)
429 COG0284 PyrF Orotidine-5'-phos 93.3 4.5 9.7E-05 36.7 14.6 35 239-273 201-235 (240)
430 TIGR00674 dapA dihydrodipicoli 93.2 6.8 0.00015 36.1 20.3 67 45-119 22-98 (285)
431 PRK07188 nicotinate phosphorib 93.2 1.2 2.5E-05 42.8 11.3 34 225-259 282-317 (352)
432 TIGR01361 DAHP_synth_Bsub phos 93.1 6.6 0.00014 36.0 15.8 178 46-259 43-236 (260)
433 PRK03620 5-dehydro-4-deoxygluc 93.1 7.6 0.00016 36.3 18.8 82 46-135 32-126 (303)
434 cd08205 RuBisCO_IV_RLP Ribulos 93.1 8.1 0.00018 37.3 17.0 45 222-270 319-366 (367)
435 TIGR02319 CPEP_Pphonmut carbox 93.1 1.6 3.4E-05 40.8 11.7 138 28-166 78-233 (294)
436 PLN02858 fructose-bisphosphate 92.9 7.2 0.00016 44.1 18.4 174 47-257 1130-1336(1378)
437 TIGR03249 KdgD 5-dehydro-4-deo 92.8 8 0.00017 35.9 19.7 83 46-135 30-124 (296)
438 PRK04147 N-acetylneuraminate l 92.8 5.3 0.00011 37.1 15.0 179 22-270 13-225 (293)
439 TIGR02317 prpB methylisocitrat 92.8 1.1 2.5E-05 41.6 10.4 118 139-278 13-144 (285)
440 PF01487 DHquinase_I: Type I 3 92.8 0.6 1.3E-05 41.5 8.3 114 47-166 15-150 (224)
441 COG2513 PrpB PEP phosphonomuta 92.7 1.6 3.6E-05 40.4 11.0 120 138-279 17-150 (289)
442 PRK07259 dihydroorotate dehydr 92.5 0.68 1.5E-05 43.1 8.6 75 45-119 172-261 (301)
443 TIGR01521 FruBisAldo_II_B fruc 92.5 10 0.00022 36.3 18.9 181 47-257 32-280 (347)
444 PRK05500 bifunctional orotidin 92.4 2.1 4.6E-05 42.7 12.3 170 83-276 77-262 (477)
445 TIGR00222 panB 3-methyl-2-oxob 92.4 7.2 0.00016 35.8 14.8 98 41-143 21-133 (263)
446 TIGR01037 pyrD_sub1_fam dihydr 92.2 0.63 1.4E-05 43.3 8.0 88 28-119 158-261 (300)
447 PRK15452 putative protease; Pr 92.1 3.2 7E-05 41.1 13.1 46 211-256 99-145 (443)
448 TIGR00734 hisAF_rel hisA/hisF 92.1 0.74 1.6E-05 41.1 8.0 68 46-120 145-212 (221)
449 cd08209 RLP_DK-MTP-1-P-enolase 92.1 9.3 0.0002 37.2 16.0 52 222-277 315-369 (391)
450 PRK09197 fructose-bisphosphate 92.1 12 0.00025 35.9 21.2 48 209-257 228-284 (350)
451 PRK08318 dihydropyrimidine deh 92.0 0.64 1.4E-05 45.5 8.1 89 27-119 168-280 (420)
452 PRK12331 oxaloacetate decarbox 91.9 12 0.00026 37.2 16.8 169 46-251 30-228 (448)
453 TIGR01362 KDO8P_synth 3-deoxy- 91.9 9.6 0.00021 34.8 14.7 170 46-253 20-222 (258)
454 PF13714 PEP_mutase: Phosphoen 91.8 3.1 6.7E-05 37.6 11.7 118 139-278 9-136 (238)
455 TIGR01949 AroFGH_arch predicte 91.7 4.9 0.00011 36.5 13.2 111 46-166 94-227 (258)
456 PRK05848 nicotinate-nucleotide 91.7 1.9 4.2E-05 39.8 10.3 82 81-166 169-257 (273)
457 cd00958 DhnA Class I fructose- 91.7 3.5 7.6E-05 36.7 11.9 111 46-166 80-214 (235)
458 KOG2335 tRNA-dihydrouridine sy 91.6 0.94 2E-05 43.1 8.3 88 27-120 141-232 (358)
459 COG0329 DapA Dihydrodipicolina 91.6 1.7 3.7E-05 40.6 10.2 73 211-284 61-138 (299)
460 PRK15492 triosephosphate isome 91.6 2.3 5.1E-05 39.0 10.8 35 221-258 212-247 (260)
461 PRK05265 pyridoxine 5'-phospha 91.6 10 0.00022 34.3 19.2 184 45-273 27-237 (239)
462 PRK05198 2-dehydro-3-deoxyphos 91.6 11 0.00023 34.6 14.8 115 46-165 28-158 (264)
463 COG2185 Sbm Methylmalonyl-CoA 91.5 0.95 2.1E-05 37.6 7.3 56 211-274 82-139 (143)
464 cd04739 DHOD_like Dihydroorota 91.4 0.95 2.1E-05 42.8 8.3 88 28-119 164-264 (325)
465 cd04730 NPD_like 2-Nitropropan 91.3 3 6.5E-05 37.0 11.1 72 43-120 110-184 (236)
466 cd00954 NAL N-Acetylneuraminic 91.3 12 0.00026 34.6 18.0 67 46-119 25-101 (288)
467 PF00218 IGPS: Indole-3-glycer 91.2 1.9 4.1E-05 39.5 9.6 84 209-299 97-188 (254)
468 COG0826 Collagenase and relate 91.1 4.7 0.0001 38.6 12.7 46 211-256 102-148 (347)
469 PRK13398 3-deoxy-7-phosphohept 91.1 12 0.00027 34.3 18.4 177 46-258 45-237 (266)
470 PF03932 CutC: CutC family; I 91.0 1.4 3E-05 38.9 8.3 95 144-272 5-112 (201)
471 PLN02424 ketopantoate hydroxym 91.0 14 0.0003 35.1 15.4 98 41-143 41-155 (332)
472 PRK05286 dihydroorotate dehydr 91.0 0.55 1.2E-05 44.8 6.3 91 28-119 212-316 (344)
473 cd04733 OYE_like_2_FMN Old yel 91.0 2.9 6.3E-05 39.7 11.2 118 46-166 153-322 (338)
474 PRK11613 folP dihydropteroate 90.9 13 0.00029 34.5 15.7 84 46-137 42-133 (282)
475 PLN02493 probable peroxisomal 90.9 0.47 1E-05 45.7 5.7 44 208-254 211-254 (367)
476 PRK00278 trpC indole-3-glycero 90.9 2.4 5.3E-05 38.8 10.2 81 209-296 99-187 (260)
477 cd04741 DHOD_1A_like Dihydroor 90.9 0.79 1.7E-05 42.7 7.1 91 27-119 157-270 (294)
478 TIGR03128 RuMP_HxlA 3-hexulose 90.9 2.8 6E-05 36.5 10.2 91 128-255 41-136 (206)
479 PRK07565 dihydroorotate dehydr 90.8 1.3 2.8E-05 42.0 8.6 88 28-119 166-266 (334)
480 PRK11572 copper homeostasis pr 90.6 1.6 3.6E-05 39.6 8.6 77 144-253 6-94 (248)
481 PRK03170 dihydrodipicolinate s 90.5 14 0.00031 34.0 20.6 82 46-135 26-121 (292)
482 TIGR03326 rubisco_III ribulose 90.5 19 0.00041 35.4 17.6 51 222-276 337-390 (412)
483 PRK11815 tRNA-dihydrouridine s 90.4 1.8 3.9E-05 41.1 9.2 91 28-120 134-232 (333)
484 cd00003 PNPsynthase Pyridoxine 90.4 8.9 0.00019 34.5 12.9 174 45-257 24-216 (234)
485 cd04738 DHOD_2_like Dihydrooro 90.4 0.87 1.9E-05 43.1 7.0 91 28-119 203-307 (327)
486 TIGR00559 pdxJ pyridoxine 5'-p 90.4 8.9 0.00019 34.6 12.9 186 45-272 24-235 (237)
487 TIGR02311 HpaI 2,4-dihydroxyhe 90.4 14 0.00029 33.6 18.3 85 39-135 17-105 (249)
488 PRK07535 methyltetrahydrofolat 90.4 1.8 3.9E-05 39.7 8.9 81 46-137 29-116 (261)
489 cd08210 RLP_RrRLP Ribulose bis 90.3 18 0.00039 34.9 18.8 47 222-272 315-364 (364)
490 PLN02460 indole-3-glycerol-pho 90.2 0.87 1.9E-05 43.3 6.7 86 209-300 168-262 (338)
491 cd00945 Aldolase_Class_I Class 90.1 4.6 0.0001 34.3 10.8 115 45-164 68-199 (201)
492 cd00423 Pterin_binding Pterin 90.1 4.1 8.8E-05 37.2 10.9 89 46-137 28-120 (258)
493 TIGR00640 acid_CoA_mut_C methy 90.0 1.3 2.7E-05 36.4 6.7 55 211-273 72-128 (132)
494 COG0352 ThiE Thiamine monophos 89.8 1.9 4E-05 38.4 8.2 75 41-119 110-184 (211)
495 cd00956 Transaldolase_FSA Tran 89.8 2.9 6.3E-05 37.1 9.4 84 81-166 91-185 (211)
496 PRK12457 2-dehydro-3-deoxyphos 89.8 17 0.00036 33.7 17.4 172 46-253 34-238 (281)
497 COG5016 Pyruvate/oxaloacetate 89.7 3.1 6.7E-05 40.4 9.9 152 53-249 48-228 (472)
498 cd00946 FBP_aldolase_IIA Class 89.7 19 0.00042 34.4 20.9 48 209-257 223-280 (345)
499 TIGR02708 L_lactate_ox L-lacta 89.7 1.5 3.2E-05 42.3 7.9 62 208-272 215-280 (367)
500 PRK09549 mtnW 2,3-diketo-5-met 89.7 22 0.00047 34.9 16.2 50 227-277 328-380 (407)
No 1
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.5e-52 Score=356.74 Aligned_cols=296 Identities=82% Similarity=1.251 Sum_probs=286.9
Q ss_pred EEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcc
Q 037779 15 IYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP 94 (310)
Q Consensus 15 i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP 94 (310)
|.|-|.+|||+.++++.|+|+||.|+++.++++|+.++++||++++.|+++|.|+|..+|..+++++..|++|++++.+|
T Consensus 1 ~t~a~~k~pfsvK~GLAQmLkGGvImdVv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~aVsiP 80 (296)
T KOG1606|consen 1 ITEAKFKSPFSVKVGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIP 80 (296)
T ss_pred CccccccCCchhhHHHHHHhcCCeEEEecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccch
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCch
Q 037779 95 VMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 95 v~~kd~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~ 174 (310)
|+.|.+++||.++|++++.|+|+|..++.+++.+....+.+|.+.+++++++++.-|+.+-++.||.+|.+.|+.+|+++
T Consensus 81 VMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v 160 (296)
T KOG1606|consen 81 VMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDV 160 (296)
T ss_pred hhhhhhhhhhhHHHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779 175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa 254 (310)
.+++++.+++..+++.+..+++|.++.+++.+..|++++++.++..++||+-+|+||+.||.|+.-++++|||||.|||.
T Consensus 161 ~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSg 240 (296)
T KOG1606|consen 161 SEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSG 240 (296)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccc
Confidence 99999999999999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCChhhHHhhhhccCCceeccccccchhhhhhccCC
Q 037779 255 VFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD 310 (310)
Q Consensus 255 i~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (310)
|+++.||.+.++++.+++.+|.+|.++.|+++.+|+.|.|+++++.++++|+|+|.
T Consensus 241 iFks~dP~k~a~aiVqAvthy~dp~~L~evS~~Lg~aM~g~~i~~~~~~~f~ngs~ 296 (296)
T KOG1606|consen 241 IFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSGLGEAMVGISIQSIKEARFANGSR 296 (296)
T ss_pred cccCCCHHHHHHHHHHHHHccCCHHHHHHHhccHHHHhhcccccchhhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999973
No 2
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=100.00 E-value=2e-45 Score=330.78 Aligned_cols=282 Identities=68% Similarity=1.052 Sum_probs=256.1
Q ss_pred cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779 27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE 106 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~ 106 (310)
+.++.+||+||.|+++.++++|+.++++||.+++.|+++|.|+|..+|..++++++.|++|++.+++||+.+.+++|+.+
T Consensus 2 k~~~a~~~kggvimdv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh~~E 81 (287)
T TIGR00343 2 KKGLAQMLKGGVIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFVE 81 (287)
T ss_pred chhHHHHhcCCeEEEeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeecCCCChh-HHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhh
Q 037779 107 AQILEAIGVDYVDESEVLTPA-DEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVM 185 (310)
Q Consensus 107 ~~~~~~aGad~v~~~~~~~~~-~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~ 185 (310)
++.+.++|+|+|..+..+.|. ++...++.+ ++++++++++|+.|+.++.+.|+|+|++.+.+||++..+++++.+.+.
T Consensus 82 a~~L~~~GvDiIDeTe~lrPade~~~~~K~~-f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~ 160 (287)
T TIGR00343 82 AQILEALGVDYIDESEVLTPADWTFHIDKKK-FKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKIN 160 (287)
T ss_pred HHHHHHcCCCEEEccCCCCcHHHHHHHHHHH-cCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHH
Confidence 999999999999877766664 455555444 499999999999999999999999999999999999999999999999
Q ss_pred cceeccccc-CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 037779 186 GDIRVLRNM-DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264 (310)
Q Consensus 186 ~~~~~l~~~-~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~ 264 (310)
.+.+.+..+ +.+.+..+++...+++++++++.+..++||+-||+|||+||+++..++++||+||+|||+|++++||...
T Consensus 161 ~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ 240 (287)
T TIGR00343 161 EEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240 (287)
T ss_pred HHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHH
Confidence 988777655 3344554555667899999999998789996448999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhHHhhhhccCCceeccccccchh-hhhhccC
Q 037779 265 ARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANRS 309 (310)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 309 (310)
+++|++++.+|.+|++++|+++.+|++|.||+....+- ||++.|.
T Consensus 241 akafv~ai~~~~~~~~~~e~s~~~~~~m~g~~~~~~~~~~~~~~r~ 286 (287)
T TIGR00343 241 AKAIVEATTHYDNPEKLAEVSKDLGEAMKGISISSISEAERLQERG 286 (287)
T ss_pred HHHHHHHHHHcCCHHHHHHHHccccccCCCCccccCCHHHHhhhcC
Confidence 99999999999999999999999999999999998875 7888885
No 3
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=100.00 E-value=1.9e-44 Score=325.36 Aligned_cols=288 Identities=72% Similarity=1.104 Sum_probs=258.4
Q ss_pred CCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecc
Q 037779 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR 100 (310)
Q Consensus 21 ~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~ 100 (310)
.++++.+.++.+||+||.|+++.+++.|+.++++|+++|..+..||.|.+..+|..++.++++|++|++.+++||+.+.+
T Consensus 3 ~~~~~~k~g~a~m~kggvimdv~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~R 82 (293)
T PRK04180 3 TGTERVKRGFAEMLKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKAR 82 (293)
T ss_pred CccHHHHHHHHHHhcCCeEEEeCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeeh
Confidence 45677889999999999999999999999999999999844449999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHcCCCeeeecCCCChhH-HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779 101 IGHFVEAQILEAIGVDYVDESEVLTPAD-EENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR 179 (310)
Q Consensus 101 i~~~~~~~~~~~aGad~v~~~~~~~~~~-~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~ 179 (310)
++|+.+++.+.++|+|+|..+..+.|.+ +...++ +.++++++++++|+.|+.++.++|+|+|++.|+.+||+..++++
T Consensus 83 igh~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K-~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~ 161 (293)
T PRK04180 83 IGHFVEAQILEALGVDYIDESEVLTPADEEYHIDK-WDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVR 161 (293)
T ss_pred hhHHHHHHHHHHcCCCEEeccCCCCchHHHHHHHH-HHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHH
Confidence 9999999999999999998776666643 444444 34599999999999999999999999999999999999999999
Q ss_pred HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
+.|.+..+++.+...+.+.....++...+++++++.+++..++||+-|++|||+||+++..++++||++|+|||+|++++
T Consensus 162 h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 162 HMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG 241 (293)
T ss_pred HHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence 99999999888887776655433444567899999999987899964488999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCChhhHHhhhhccCCceeccccccch-hhhhhccC
Q 037779 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVK-VERYANRS 309 (310)
Q Consensus 260 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 309 (310)
||.+.+++|++++.+|.+|.+++|+++.+|++|.||+..+.+ -|+++.|.
T Consensus 242 dP~~~akafv~ai~~~~~~~~~~~~s~~~~~~m~g~~~~~~~~~~~~~~r~ 292 (293)
T PRK04180 242 DPEKRARAIVEATTHYDDPEVLAEVSKGLGEAMVGIDIDELPPEERLQERG 292 (293)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHcccccccCCCccccCCHHHHhhhcC
Confidence 999999999999999999999999999999999999999875 57888775
No 4
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=9.6e-45 Score=314.25 Aligned_cols=284 Identities=73% Similarity=1.123 Sum_probs=269.6
Q ss_pred cccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch
Q 037779 25 SVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF 104 (310)
Q Consensus 25 ~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~ 104 (310)
..+.++.+|+++|.|+++.++++|+.++++||.+++.|+++|.|+|.-+|..++.++..+++|-+++.+||+.|.+|+|+
T Consensus 10 ~vK~g~a~m~KGGVIMDV~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAKvRIGH~ 89 (296)
T COG0214 10 RVKRGFAQMLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKVRIGHF 89 (296)
T ss_pred HHHhhHHHHhcCCeEEEecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeeeeecchh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHh
Q 037779 105 VEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSV 184 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~ 184 (310)
.+++++++.|+|+|..++.++|.+..-.+.+..+.++++++++|+-|+.+-+..||..|.+.|+.+||++.+++++.+.+
T Consensus 90 ~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i 169 (296)
T COG0214 90 VEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKI 169 (296)
T ss_pred HHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999988888887788999999999999999999999999999999999999999999999
Q ss_pred hcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 037779 185 MGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264 (310)
Q Consensus 185 ~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~ 264 (310)
..+++.+..++.|.+...++++..|++++..+.+..++||+-+++|||.||.|+.-.+++|||||.|||.||+++||.++
T Consensus 170 ~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~ 249 (296)
T COG0214 170 NGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKR 249 (296)
T ss_pred HHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHH
Confidence 99999888888888876678888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhHHhhhhccCCceeccccccchh-hhhhcc
Q 037779 265 ARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308 (310)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (310)
++++.++..+|.+|+++++++..+|++|.||+.++++- +|++.|
T Consensus 250 A~AIV~A~~~yddp~~laevs~~lg~~M~Gi~i~~l~~~~rlq~R 294 (296)
T COG0214 250 AKAIVEATTHYDDPEVLAEVSEGLGEAMKGIDISELPEEERLQER 294 (296)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhccccCCCChhhCCHHHHHHhc
Confidence 99999999999999999999999999999999999875 566655
No 5
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=100.00 E-value=4.8e-41 Score=302.44 Aligned_cols=279 Identities=72% Similarity=1.114 Sum_probs=250.3
Q ss_pred cceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHH
Q 037779 29 GLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 29 ~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~ 108 (310)
++.+||++|.|+++.++++|+.++++||.+++.|+++|.|+|..+|..+++.+++|++|++.+++||+.+.+.+|+.+++
T Consensus 2 ~~~~~~~~g~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~ 81 (283)
T cd04727 2 GFAQMLKGGVIMDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQ 81 (283)
T ss_pred cHHHHhcCCeEEEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHcCCCeeeecCCCCh-hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779 109 ILEAIGVDYVDESEVLTP-ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD 187 (310)
Q Consensus 109 ~~~~aGad~v~~~~~~~~-~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~ 187 (310)
.+.++|+|.|..+..+.| .++...++.++ ++++++++.|++|+.++.++|+|+|++.+..||++..+++++.+.++..
T Consensus 82 ~L~eaGvDiIDaT~r~rP~~~~~~~iK~~~-~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~ 160 (283)
T cd04727 82 ILEALGVDMIDESEVLTPADEEHHIDKHKF-KVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGE 160 (283)
T ss_pred HHHHcCCCEEeccCCCCcHHHHHHHHHHHc-CCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999975555444 56777776654 9999999999999999999999999999999999999999999999999
Q ss_pred eecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779 188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~ 267 (310)
++.+...+.+..+.+++...+++++++.+.+..++||+.||+|||+||+++.+++++||++|+|||+|++++||...+++
T Consensus 161 i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~ 240 (283)
T cd04727 161 IRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARA 240 (283)
T ss_pred HHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHH
Confidence 88777776655433333346789999999998789996447899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhhHHhhhhccCCceeccccccchh-hhhhcc
Q 037779 268 IVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308 (310)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (310)
|++.++.|.+|.++.|+++.+|++|.|+++...|. ||+..|
T Consensus 241 f~~ai~~~~~~~~~~e~~~~~~~~m~~~~~~~~~~~~~~~~~ 282 (283)
T cd04727 241 IVEAVTHYDDPEILAEVSEGLGEAMVGIDIASLKEEERMQER 282 (283)
T ss_pred HHHHHHhcCCHHHHHHHHcccccCCCCcccccCCHHHHhccC
Confidence 99999999999999999999999999999988665 455443
No 6
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-35 Score=261.86 Aligned_cols=205 Identities=27% Similarity=0.393 Sum_probs=175.2
Q ss_pred ecceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH
Q 037779 10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK 88 (310)
Q Consensus 10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~ 88 (310)
.++++|+|+||+|||+ |.|....+| ++|+.|+++||.+||+| ||+++|.|+ ++.++.++
T Consensus 44 ~~~~vIAEvKkaSPS~-----------G~ir~d~dp~~ia~~Ye~~GAa~iSVL----Td~~~F~Gs-----~e~L~~v~ 103 (254)
T COG0134 44 GKPAVIAEVKKASPSK-----------GLIREDFDPVEIAKAYEEGGAAAISVL----TDPKYFQGS-----FEDLRAVR 103 (254)
T ss_pred CCceEEEEeecCCCCC-----------CcccccCCHHHHHHHHHHhCCeEEEEe----cCccccCCC-----HHHHHHHH
Confidence 4789999999999999 999988886 68999999999999999 999999999 99999999
Q ss_pred hhcCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEE
Q 037779 89 SSVTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIR 164 (310)
Q Consensus 89 ~~~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~ 164 (310)
+.+++||++|||+.+ ++|+..+ +|||.|+ +...++..++.+.+.. +..|+.+++++||.+|++++.+.|+++|+
T Consensus 104 ~~v~~PvL~KDFiiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIG 181 (254)
T COG0134 104 AAVDLPVLRKDFIID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIG 181 (254)
T ss_pred HhcCCCeeeccCCCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEE
Confidence 999999999999984 5555544 9999998 6677777777777766 67899999999999999999999999999
Q ss_pred EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779 165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL 244 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~ 244 (310)
+|. |++.+++.| +....++.+.+++. ++.|+++||++++|+.++.+.
T Consensus 182 INn---------------------RdL~tf~vd--------l~~t~~la~~~p~~----~~~IsESGI~~~~dv~~l~~~ 228 (254)
T COG0134 182 INN---------------------RDLTTLEVD--------LETTEKLAPLIPKD----VILISESGISTPEDVRRLAKA 228 (254)
T ss_pred EeC---------------------CCcchheec--------HHHHHHHHhhCCCC----cEEEecCCCCCHHHHHHHHHc
Confidence 995 355555432 23345565555542 444899999999999999999
Q ss_pred CCCEEEEccccccCCCHHHHHHHHH
Q 037779 245 GCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 245 GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
|++|++||++||+++||.+.++++.
T Consensus 229 ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 229 GADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred CCCEEEecHHHhcCCCHHHHHHHhh
Confidence 9999999999999999988888764
No 7
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=100.00 E-value=9.6e-35 Score=269.73 Aligned_cols=204 Identities=25% Similarity=0.347 Sum_probs=174.2
Q ss_pred ceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779 12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS 90 (310)
Q Consensus 12 ~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~ 90 (310)
+++|+|+||+|||+ |.|++..+| ++|+.|+++||.+||+| ||.++|+|+ ++.++++|+.
T Consensus 119 ~~vIAEvKrASPSk-----------G~I~~~~dp~~iA~~Ye~~GA~aISVL----Td~~~F~Gs-----~e~L~~vr~~ 178 (338)
T PLN02460 119 PGLIAEVKKASPSR-----------GVLRENFDPVEIAQAYEKGGAACLSVL----TDEKYFQGS-----FENLEAIRNA 178 (338)
T ss_pred cceEeeeccCCCCC-----------CccCCCCCHHHHHHHHHhCCCcEEEEe----cCcCcCCCC-----HHHHHHHHHc
Confidence 79999999999999 999998886 78999999999999999 999999999 9999999998
Q ss_pred -cCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHh-CCCEEE
Q 037779 91 -VTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIRE-GAAMIR 164 (310)
Q Consensus 91 -~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~-Gad~I~ 164 (310)
+++||++|||+. +.+|++++ +|||.|+ +...+++.++..++.. +..|+.+++++||.+|++++.+. |+++|+
T Consensus 179 ~v~lPvLrKDFII--D~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIG 256 (338)
T PLN02460 179 GVKCPLLCKEFIV--DAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIG 256 (338)
T ss_pred CCCCCEeeccccC--CHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEE
Confidence 999999999998 46676666 9999998 7778887777777766 77899999999999999999998 999999
Q ss_pred EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHH-----HHHhcCCCCEEEEccCCCCCHHHHH
Q 037779 165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVM-----QTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~-----~i~~~~~iPVv~ia~GGI~t~~di~ 239 (310)
+|+ |++.+++.| +....++.+ .++. . -++.|+++||+|++|+.
T Consensus 257 INN---------------------RdL~Tf~vD--------l~~t~~L~~~~~~~~i~~-~--~~~~VsESGI~t~~Dv~ 304 (338)
T PLN02460 257 INN---------------------RSLETFEVD--------ISNTKKLLEGERGEQIRE-K--GIIVVGESGLFTPDDVA 304 (338)
T ss_pred EeC---------------------CCCCcceEC--------HHHHHHHhhhccccccCC-C--CeEEEECCCCCCHHHHH
Confidence 995 356665432 222444544 2211 1 24447999999999999
Q ss_pred HHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779 240 MMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 240 ~~~~~GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
.+.++|+|+|+||++||+++||...+++|.
T Consensus 305 ~l~~~GadAvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 305 YVQNAGVKAVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred HHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999888875
No 8
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=100.00 E-value=2.4e-34 Score=259.94 Aligned_cols=206 Identities=27% Similarity=0.372 Sum_probs=160.8
Q ss_pred ecceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH
Q 037779 10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK 88 (310)
Q Consensus 10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~ 88 (310)
.+.++|+|+||+|||+ |.+....++ ++|+.|.++||++||++ ||+++|+|+ ++++..++
T Consensus 46 ~~~~vIAEiKraSPs~-----------G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~dL~~v~ 105 (254)
T PF00218_consen 46 GRISVIAEIKRASPSK-----------GDIREDFDPAEIAKAYEEAGAAAISVL----TEPKFFGGS-----LEDLRAVR 105 (254)
T ss_dssp SS-EEEEEE-SEETTT-----------EESBSS-SHHHHHHHHHHTT-SEEEEE------SCCCHHH-----HHHHHHHH
T ss_pred CCCeEEEEeecCCCCC-----------CccCccCCHHHHHHHHHhcCCCEEEEE----CCCCCCCCC-----HHHHHHHH
Confidence 5689999999999999 999998886 78999999999999999 999999999 99999999
Q ss_pred hhcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779 89 SSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 89 ~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
+.+++|+++|||+.+..++.....+|||.|+ +...+++.++.+++.. +..|+.+++++||.+|++++.+.|+++|++|
T Consensus 106 ~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGIN 185 (254)
T PF00218_consen 106 KAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGIN 185 (254)
T ss_dssp HHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE
T ss_pred HHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEe
Confidence 9999999999999853333344449999998 7777777777777766 6789999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779 167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC 246 (310)
Q Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga 246 (310)
. |++.++..| .....++.+.+++ + ++.|++|||++++|+.++..+|+
T Consensus 186 n---------------------RdL~tf~vd--------~~~~~~l~~~ip~--~--~~~iseSGI~~~~d~~~l~~~G~ 232 (254)
T PF00218_consen 186 N---------------------RDLKTFEVD--------LNRTEELAPLIPK--D--VIVISESGIKTPEDARRLARAGA 232 (254)
T ss_dssp S---------------------BCTTTCCBH--------THHHHHHHCHSHT--T--SEEEEESS-SSHHHHHHHCTTT-
T ss_pred C---------------------ccccCcccC--------hHHHHHHHhhCcc--c--eeEEeecCCCCHHHHHHHHHCCC
Confidence 4 355665533 2224556666664 2 34479999999999999999999
Q ss_pred CEEEEccccccCCCHHHHHHHH
Q 037779 247 DGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 247 dgV~VGsai~~~~dp~~~~~~~ 268 (310)
|||+||++||+++||.+.++++
T Consensus 233 davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 233 DAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp SEEEESHHHHTSSSHHHHHHHH
T ss_pred CEEEECHHHhCCCCHHHHHhcC
Confidence 9999999999999999988765
No 9
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=100.00 E-value=7.5e-33 Score=248.35 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=172.9
Q ss_pred cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779 11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89 (310)
Q Consensus 11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~ 89 (310)
+.++|+|+||+|||+ |.+....++ ++|+.|+++||.+||++ ||.++|+|+ .++++.+++
T Consensus 40 ~~~vIaEiKr~SPs~-----------G~i~~~~d~~~~A~~y~~~GA~aISVl----Te~~~F~Gs-----~~~l~~v~~ 99 (247)
T PRK13957 40 SFSIIAECKRKSPSA-----------GELRADYHPVQIAKTYETLGASAISVL----TDQSYFGGS-----LEDLKSVSS 99 (247)
T ss_pred CCeEEEEEecCCCCC-----------CCcCCCCCHHHHHHHHHHCCCcEEEEE----cCCCcCCCC-----HHHHHHHHH
Confidence 479999999999999 999987776 79999999999999999 999999999 999999999
Q ss_pred hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779 90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g 167 (310)
.+++||++|||+.+..++.....+|||.|+ +...+++.++.+++.. +..|+.+++++||.+|++++.+.|+++|++|.
T Consensus 100 ~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINn 179 (247)
T PRK13957 100 ELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINT 179 (247)
T ss_pred hcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeC
Confidence 999999999999964444444459999998 7777777778877776 77899999999999999999999999999995
Q ss_pred CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779 168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad 247 (310)
+ ++.++..| .....++.+.+++ +. +.|++|||+|++|+.++... +|
T Consensus 180 R---------------------dL~t~~vd--------~~~~~~L~~~ip~--~~--~~IsESGI~t~~d~~~l~~~-~d 225 (247)
T PRK13957 180 R---------------------DLDTFQIH--------QNLVEEVAAFLPP--NI--VKVGESGIESRSDLDKFRKL-VD 225 (247)
T ss_pred C---------------------CCccceEC--------HHHHHHHHhhCCC--Cc--EEEEcCCCCCHHHHHHHHHh-CC
Confidence 4 55555432 2334666666654 22 33789999999999999887 99
Q ss_pred EEEEccccccCCCHHHHHHHH
Q 037779 248 GVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 248 gV~VGsai~~~~dp~~~~~~~ 268 (310)
||+||+++|+++||.+.+++|
T Consensus 226 avLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 226 AALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred EEEECHHHhCCCCHHHHHHHh
Confidence 999999999999999888775
No 10
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=99.98 E-value=1.3e-31 Score=260.44 Aligned_cols=230 Identities=23% Similarity=0.254 Sum_probs=188.5
Q ss_pred cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779 11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89 (310)
Q Consensus 11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~ 89 (310)
++++|+|+||+|||+ |.+....+| ++|+.| +.||++||+| ||.++|+|+ +++++.+++
T Consensus 49 ~~~vIaEiKraSPs~-----------G~i~~~~d~~~~a~~y-~~gA~aiSVl----Te~~~F~Gs-----~~~l~~vr~ 107 (454)
T PRK09427 49 KTAFILECKKASPSK-----------GLIRDDFDPAEIARVY-KHYASAISVL----TDEKYFQGS-----FDFLPIVRA 107 (454)
T ss_pred CCceEEEeecCCCCC-----------CccCCCCCHHHHHHHH-HcCCeEEEEe----cCcCcCCCC-----HHHHHHHHH
Confidence 579999999999999 999988886 789999 8889999999 999999999 999999999
Q ss_pred hcCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEE
Q 037779 90 SVTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRT 165 (310)
Q Consensus 90 ~~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v 165 (310)
.+++||++|||+.+ ++|++++ +|||.|+ +...+++.++.+++.. +..|+.+++++||.+|++++.+.|+++|++
T Consensus 108 ~v~~PvLrKDFiid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGi 185 (454)
T PRK09427 108 IVTQPILCKDFIID--PYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGI 185 (454)
T ss_pred hCCCCEEeccccCC--HHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEE
Confidence 99999999999985 5555555 9999998 7777777777777766 678999999999999999999999999999
Q ss_pred ecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779 166 KGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G 245 (310)
|++ ++.+++-| .....++.+.+++ ++ +.|++|||+|++|+..+.. |
T Consensus 186 NnR---------------------dL~t~~vd--------~~~~~~l~~~ip~--~~--~~vseSGI~t~~d~~~~~~-~ 231 (454)
T PRK09427 186 NNR---------------------NLRDLSID--------LNRTRELAPLIPA--DV--IVISESGIYTHAQVRELSP-F 231 (454)
T ss_pred eCC---------------------CCccceEC--------HHHHHHHHhhCCC--Cc--EEEEeCCCCCHHHHHHHHh-c
Confidence 953 55665432 2335667666664 23 3478999999999999765 7
Q ss_pred CCEEEEccccccCCCHHHHHHHHHHHHHc--CCChhhHHhhhhccCCceecccc
Q 037779 246 CDGVFVGSGVFKSGDPVRRARAIVQAVTN--YSDPDVLAEVSCGLGEAMVGIDL 297 (310)
Q Consensus 246 adgV~VGsai~~~~dp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 297 (310)
+|||+||++||+++||.+.+++|....-+ +..-.--.+.+...|.++.|+.|
T Consensus 232 ~davLiG~~lm~~~d~~~~~~~L~~~~vKICGit~~eda~~a~~~GaD~lGfIf 285 (454)
T PRK09427 232 ANGFLIGSSLMAEDDLELAVRKLILGENKVCGLTRPQDAKAAYDAGAVYGGLIF 285 (454)
T ss_pred CCEEEECHHHcCCCCHHHHHHHHhccccccCCCCCHHHHHHHHhCCCCEEeeEe
Confidence 99999999999999999999988664111 01112235567778999999986
No 11
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.98 E-value=8.2e-31 Score=239.38 Aligned_cols=205 Identities=23% Similarity=0.338 Sum_probs=169.9
Q ss_pred cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779 11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89 (310)
Q Consensus 11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~ 89 (310)
+.++|+|+||+||++ |++....++ ++|+.|.++||++|+++ ||+++|+|+ +++++.+++
T Consensus 49 ~~~vIaeik~~sps~-----------g~i~~~~~~~~~A~~~~~~GA~aisvl----te~~~f~g~-----~~~l~~v~~ 108 (260)
T PRK00278 49 KPAVIAEVKKASPSK-----------GVIREDFDPVEIAKAYEAGGAACLSVL----TDERFFQGS-----LEYLRAARA 108 (260)
T ss_pred CCeEEEEeeCCCCCC-----------CccCCCCCHHHHHHHHHhCCCeEEEEe----cccccCCCC-----HHHHHHHHH
Confidence 379999999999999 999988885 79999999999999988 999999988 999999999
Q ss_pred hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779 90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g 167 (310)
.+++||+++||+.+..+++.+.++|||.|+ +...+++..+.+.+.. +..|+.+++++||.+|++++.++|+|+|++|+
T Consensus 109 ~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 109 AVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred hcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999866677788889999998 4444566666666665 56789999999999999999999999999984
Q ss_pred CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-C-CCCEEEEccCCCCCHHHHHHHHHcC
Q 037779 168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-G-RLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~-~iPVv~ia~GGI~t~~di~~~~~~G 245 (310)
+ ++.++. .+.+....+.+. . ..|+ |++|||+|++++.+++++|
T Consensus 189 r---------------------dl~~~~------------~d~~~~~~l~~~~p~~~~v--IaegGI~t~ed~~~~~~~G 233 (260)
T PRK00278 189 R---------------------NLKTFE------------VDLETTERLAPLIPSDRLV--VSESGIFTPEDLKRLAKAG 233 (260)
T ss_pred C---------------------Cccccc------------CCHHHHHHHHHhCCCCCEE--EEEeCCCCHHHHHHHHHcC
Confidence 3 222222 123333333332 1 2466 6789999999999999999
Q ss_pred CCEEEEccccccCCCHHHHHHHHHH
Q 037779 246 CDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 246 adgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
+|+|+|||+||+++||.+.+++|..
T Consensus 234 ad~vlVGsaI~~~~dp~~~~~~l~~ 258 (260)
T PRK00278 234 ADAVLVGESLMRADDPGAALRELLG 258 (260)
T ss_pred CCEEEECHHHcCCCCHHHHHHHHhc
Confidence 9999999999999999999888753
No 12
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=6.4e-31 Score=265.78 Aligned_cols=208 Identities=26% Similarity=0.342 Sum_probs=178.5
Q ss_pred ceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779 12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS 90 (310)
Q Consensus 12 ~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~ 90 (310)
.+||+|+||+|||+ |.|.+..++ ++|+.|+++||++||+| ||.++|+|+ +++++.+++.
T Consensus 50 ~~vIaEiKraSPs~-----------G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~~l~~vr~~ 109 (695)
T PRK13802 50 IPVIAEIKRASPSK-----------GHLSDIPDPAALAREYEQGGASAISVL----TEGRRFLGS-----LDDFDKVRAA 109 (695)
T ss_pred CeEEEEeecCCCCC-----------CcCCCCCCHHHHHHHHHHcCCcEEEEe----cCcCcCCCC-----HHHHHHHHHh
Confidence 68999999999999 999988786 78999999999999999 999999999 9999999999
Q ss_pred cCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779 91 VTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 91 ~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
+++||++|||+.+ ++|++++ +|||.|+ +...++..++.+++.. +..|+.+++++||.+|++++.+.|+++|++|
T Consensus 110 v~~PvLrKDFIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGIN 187 (695)
T PRK13802 110 VHIPVLRKDFIVT--DYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGIN 187 (695)
T ss_pred CCCCEEeccccCC--HHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEe
Confidence 9999999999985 5555554 9999998 7777777777777766 6789999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779 167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC 246 (310)
Q Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga 246 (310)
. |++.++..| +....++.+.+++ ++ +.|+++||++++|+..+.++|+
T Consensus 188 n---------------------RdL~tf~vd--------~~~t~~L~~~ip~--~~--~~VsESGI~~~~d~~~l~~~G~ 234 (695)
T PRK13802 188 A---------------------RNLKDLKVD--------VNKYNELAADLPD--DV--IKVAESGVFGAVEVEDYARAGA 234 (695)
T ss_pred C---------------------CCCccceeC--------HHHHHHHHhhCCC--Cc--EEEEcCCCCCHHHHHHHHHCCC
Confidence 5 456665432 2335667666654 23 3378999999999999999999
Q ss_pred CEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 247 DGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 247 dgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
|+|+||++||+++||...+++|..+-..
T Consensus 235 davLIGeslm~~~dp~~~~~~l~~~~~~ 262 (695)
T PRK13802 235 DAVLVGEGVATADDHELAVERLVKAGAR 262 (695)
T ss_pred CEEEECHHhhCCCCHHHHHHHHHhcccc
Confidence 9999999999999999999998766433
No 13
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=99.96 E-value=1.8e-29 Score=211.03 Aligned_cols=204 Identities=78% Similarity=1.208 Sum_probs=171.6
Q ss_pred cccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch
Q 037779 25 SVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF 104 (310)
Q Consensus 25 ~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~ 104 (310)
..+.++.+||+||.|+++.++++|+.++++||.+++.|+++|.|+|.-+|..+|+++..|++|.+++.+||+.|.++||+
T Consensus 4 ~~k~gla~mlkGGVIMDV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPVMAK~RIGHf 83 (208)
T PF01680_consen 4 RVKRGLAQMLKGGVIMDVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHF 83 (208)
T ss_dssp HHHHHHHHTTTTEEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEEEEEEETT-H
T ss_pred hHHhhHHHHhcCCeEEEecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEeceeecccccee
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHh
Q 037779 105 VEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSV 184 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~ 184 (310)
.++|++++.|+|+|..++.++|.+-...+.++.+.++++++++|+-|+.+-+..||.+|.+.|+.+||+..+++++.+.+
T Consensus 84 vEAqiLealgVD~IDESEVLTpAD~~~HI~K~~F~vPFVcGarnLGEALRRI~EGAaMIRtKGEaGTGnvveAVrH~R~i 163 (208)
T PF01680_consen 84 VEAQILEALGVDYIDESEVLTPADEENHIDKHNFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRTI 163 (208)
T ss_dssp HHHHHHHHTT-SEEEEETTS--S-SS----GGG-SS-EEEEESSHHHHHHHHHTT-SEEEEETTTTST-THHHHHHHHHH
T ss_pred ehhhhHHHhCCceeccccccccccccccccchhCCCCeEecCCCHHHHHhhHHhhhhhhcccCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999888889888899999999999999999999999999999999999999999999999
Q ss_pred hcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEc
Q 037779 185 MGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 185 ~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia 228 (310)
+.+++.+..++.|.+..+++.+..|++++.++++..++||+-++
T Consensus 164 ~~eI~~l~~~~~~el~~~Ak~~~ap~eLv~~~~~~grLPVvnFa 207 (208)
T PF01680_consen 164 NGEIRRLQNMDDEELFAFAKEIGAPYELVKEVAELGRLPVVNFA 207 (208)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHTCGHHHHHHHHHHTSSSSEEEE
T ss_pred HHHHHHHHcCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCcccCC
Confidence 99999999999999988888889999999999999999997553
No 14
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.96 E-value=8.8e-28 Score=213.94 Aligned_cols=203 Identities=22% Similarity=0.323 Sum_probs=165.9
Q ss_pred cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779 11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89 (310)
Q Consensus 11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~ 89 (310)
+.++|+|+||+||+. |.+....++ ++|+.|.++||++|+.. ++...|+|+ ++.++.+++
T Consensus 10 ~~~vIae~k~~sp~~-----------~~~~~~~~~~~~A~~~~~~GA~~l~v~----~~~~~~~g~-----~~~~~~i~~ 69 (217)
T cd00331 10 GLGVIAEVKRASPSK-----------GLIREDFDPVEIAKAYEKAGAAAISVL----TEPKYFQGS-----LEDLRAVRE 69 (217)
T ss_pred CceEEEEecCCCCCC-----------CcCCCCCCHHHHHHHHHHcCCCEEEEE----eCccccCCC-----HHHHHHHHH
Confidence 379999999999999 999888886 89999999999999876 667777777 899999999
Q ss_pred hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779 90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g 167 (310)
.+++||++++++.+..+++.+.++|||+|+ ....+++..+.+.++. ...++.+++++++.+|++++.+.|++++++++
T Consensus 70 ~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~ 149 (217)
T cd00331 70 AVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINN 149 (217)
T ss_pred hcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeC
Confidence 999999999988765688999999999998 3444455555555554 44688889999999999999999999999874
Q ss_pred CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779 168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~G 245 (310)
...+ . ...+.+.+..+.+. .++|+ +++|||++++|+.+++++|
T Consensus 150 ~~~~---------------------~------------~~~~~~~~~~l~~~~~~~~pv--ia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 150 RDLK---------------------T------------FEVDLNTTERLAPLIPKDVIL--VSESGISTPEDVKRLAEAG 194 (217)
T ss_pred CCcc---------------------c------------cCcCHHHHHHHHHhCCCCCEE--EEEcCCCCHHHHHHHHHcC
Confidence 3211 1 12234566666654 35788 6789999999999999999
Q ss_pred CCEEEEccccccCCCHHHHHHHH
Q 037779 246 CDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 246 adgV~VGsai~~~~dp~~~~~~~ 268 (310)
++||+|||+|++..||.+.+++|
T Consensus 195 a~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 195 ADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred CCEEEECHHHcCCCCHHHHHHhC
Confidence 99999999999999998887653
No 15
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=99.95 E-value=1e-27 Score=206.16 Aligned_cols=205 Identities=22% Similarity=0.276 Sum_probs=171.4
Q ss_pred cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779 11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89 (310)
Q Consensus 11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~ 89 (310)
.+|+|+|.||+|||+ |.+....++ ++|..|.++||.+||+| ||++||.|+ ++++..+|+
T Consensus 70 ~p~liAEVKrASPSk-----------G~ik~d~~~ae~A~~Yak~GAs~iSVL----Te~k~FkGs-----ledL~~irk 129 (289)
T KOG4201|consen 70 RPGLIAEVKRASPSK-----------GIIKLDANAAEQALAYAKGGASCISVL----TEPKWFKGS-----LEDLVAIRK 129 (289)
T ss_pred cchHHHHHhhcCCCC-----------CccccccCHHHHHHHHHhcCceeeeee----cCchhhccc-----HHHHHHHHH
Confidence 589999999999999 999988775 89999999999999999 999999999 888888887
Q ss_pred hc--Ccc---eEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCC
Q 037779 90 SV--TIP---VMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGA 160 (310)
Q Consensus 90 ~~--~lP---v~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Ga 160 (310)
.. ..| +++|+|+. +.+|++++ .|||.|+ +...++..++...++- +..++..++++|+.+|..++++.|+
T Consensus 130 ~~~~k~p~~~lL~KeFiv--d~~QI~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGa 207 (289)
T KOG4201|consen 130 IAGVKCPPKCLLRKEFIV--DPYQIYEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGA 207 (289)
T ss_pred HhcCcCChHhHhHHHHcc--CHHHHHHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCc
Confidence 64 467 99999987 57888888 9999998 6666665555555544 5578999999999999999999999
Q ss_pred CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779 161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~ 240 (310)
..|++|++ ++.+++. ++..+..++..+++ .|+.++.+||.||+|+..
T Consensus 208 kvvGvNNR---------------------nL~sFeV--------DlstTskL~E~i~k----Dvilva~SGi~tpdDia~ 254 (289)
T KOG4201|consen 208 KVVGVNNR---------------------NLHSFEV--------DLSTTSKLLEGIPK----DVILVALSGIFTPDDIAK 254 (289)
T ss_pred EEEeecCC---------------------ccceeee--------chhhHHHHHhhCcc----ceEEEeccCCCCHHHHHH
Confidence 99999853 4555542 34445566666553 455588999999999999
Q ss_pred HHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 241 ~~~~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
..+.|+.+|+||..+|+..||.+.++++..
T Consensus 255 ~q~~GV~avLVGEslmk~sDp~k~i~eL~~ 284 (289)
T KOG4201|consen 255 YQKAGVKAVLVGESLMKQSDPKKFIHELFG 284 (289)
T ss_pred HHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence 999999999999999999999988877643
No 16
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.88 E-value=3.7e-21 Score=164.54 Aligned_cols=174 Identities=27% Similarity=0.384 Sum_probs=131.6
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc---c-------chHHHHHHHHcCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI---G-------HFVEAQILEAIGV 115 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i---~-------~~~~~~~~~~aGa 115 (310)
.+|+++.++||.+| |..+ ++++++|++.+++||+.-... + +.+++..+.++|+
T Consensus 3 ~mA~Aa~~gGA~gi----------R~~~-------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGa 65 (192)
T PF04131_consen 3 RMAKAAEEGGAVGI----------RANG-------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGA 65 (192)
T ss_dssp HHHHHHHHCT-SEE----------EEES-------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-
T ss_pred HHHHHHHHCCceEE----------EcCC-------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCC
Confidence 68999999999997 4443 899999999999999873221 1 3478899999999
Q ss_pred Ceeeec-----CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779 116 DYVDES-----EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV 190 (310)
Q Consensus 116 d~v~~~-----~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (310)
|.|..+ ...+..++++.+++++ ..++++|.|.+|+..+.++|+|+|++...+|++..
T Consensus 66 dIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t---------------- 127 (192)
T PF04131_consen 66 DIIALDATDRPRPETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYT---------------- 127 (192)
T ss_dssp SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS----------------
T ss_pred CEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCC----------------
Confidence 999832 1134567777777755 99999999999999999999999999877776531
Q ss_pred ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
.+..+++++++.+.+. ++|| |++|+|+||+++.+++++||++|+|||+|++ |...++.|.+
T Consensus 128 -------------~~~~pD~~lv~~l~~~-~~pv--IaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ 188 (192)
T PF04131_consen 128 -------------KGDGPDFELVRELVQA-DVPV--IAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVD 188 (192)
T ss_dssp -------------TTSSHHHHHHHHHHHT-TSEE--EEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHH
T ss_pred -------------CCCCCCHHHHHHHHhC-CCcE--eecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHH
Confidence 0124579999999885 7898 7899999999999999999999999999998 8888999998
Q ss_pred HHH
Q 037779 271 AVT 273 (310)
Q Consensus 271 ~~~ 273 (310)
+++
T Consensus 189 ai~ 191 (192)
T PF04131_consen 189 AIK 191 (192)
T ss_dssp HCH
T ss_pred HHh
Confidence 875
No 17
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=5.4e-20 Score=157.94 Aligned_cols=195 Identities=28% Similarity=0.411 Sum_probs=152.5
Q ss_pred cceeeecCCccccCCC------------HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779 29 GLAQMLRGGVIMDVVT------------PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM 96 (310)
Q Consensus 29 ~~~~~l~~g~i~~~~~------------~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~ 96 (310)
.+...+++|.|.+|.. +.+|+++.++||.+| |..+ .++|+++++.+++|++
T Consensus 8 ~~~~~~~gglIVSCQal~~~pl~~~~iv~~mA~Aa~~gGAvgi----------R~~g-------v~dIkai~~~v~vPII 70 (229)
T COG3010 8 KLKEQLKGGLIVSCQALPGEPLDSPEIVAAMALAAEQGGAVGI----------RIEG-------VEDIKAIRAVVDVPII 70 (229)
T ss_pred HHHHHhcCCeEEEeecCCCCCCcchhHHHHHHHHHHhCCcceE----------eecc-------hhhHHHHHhhCCCCeE
Confidence 3445667788877743 268999999999997 4433 7899999999999998
Q ss_pred ee---c------ccc-chHHHHHHHHcCCCeeeec--CCCChh-HHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCE
Q 037779 97 AK---A------RIG-HFVEAQILEAIGVDYVDES--EVLTPA-DEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAM 162 (310)
Q Consensus 97 ~k---d------~i~-~~~~~~~~~~aGad~v~~~--~~~~~~-~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~ 162 (310)
.- | +|. +.++++.+.++|++.|... .-.-|. .+.+.++. +.+++..+++|.|++|...|.++|+|+
T Consensus 71 GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~ 150 (229)
T COG3010 71 GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDI 150 (229)
T ss_pred EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcE
Confidence 73 2 221 2368899999999999843 211233 44444544 678899999999999999999999999
Q ss_pred EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779 163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~ 242 (310)
|++...+||++. . ....+++++++.+.+ ..++| ||+|.++||+++.+++
T Consensus 151 IGTTLsGYT~~~------------------~----------~~~~pDf~lvk~l~~-~~~~v--IAEGr~~tP~~Ak~a~ 199 (229)
T COG3010 151 IGTTLSGYTGYT------------------E----------KPTEPDFQLVKQLSD-AGCRV--IAEGRYNTPEQAKKAI 199 (229)
T ss_pred EecccccccCCC------------------C----------CCCCCcHHHHHHHHh-CCCeE--EeeCCCCCHHHHHHHH
Confidence 998866776531 0 012557999999988 56788 7899999999999999
Q ss_pred HcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 243 QLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 243 ~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
+.||++|+|||+|++ |..-++.|.++++.
T Consensus 200 ~~Ga~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 200 EIGADAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred HhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence 999999999999998 88888999888763
No 18
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.82 E-value=1.2e-18 Score=153.61 Aligned_cols=183 Identities=20% Similarity=0.281 Sum_probs=140.3
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCC--CCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ec
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVA--RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ES 121 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~--~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~ 121 (310)
.+.++.+.++|++.+ +++ .++.+. .......++.+++.+++|++++|.+. .+.+.|||+|| .+
T Consensus 24 ~~~ve~al~~Gv~~v-QlR-------~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~d------lA~~~~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAV-QLR-------EKDLSDEEYLALAEKLRALCQKYGVPLIINDRVD------LALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEE-EEe-------cCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHH------HHHhCCCCEEEcCC
Confidence 688999999999998 553 222110 01224567778888899999997754 67789999999 45
Q ss_pred CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779 122 EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 201 (310)
+.++..+..+.+ +.++.+++++|+.+|++++.+.|+||+++ |+.|.+ .++..
T Consensus 90 ~D~~~~~ar~~~---~~~~iIG~S~h~~eea~~A~~~g~DYv~~-GpifpT---------------------~tK~~--- 141 (211)
T COG0352 90 DDMPLAEARELL---GPGLIIGLSTHDLEEALEAEELGADYVGL-GPIFPT---------------------STKPD--- 141 (211)
T ss_pred cccchHHHHHhc---CCCCEEEeecCCHHHHHHHHhcCCCEEEE-CCcCCC---------------------CCCCC---
Confidence 555555554433 45689999999999999999999999998 454422 21110
Q ss_pred hhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779 202 FAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275 (310)
Q Consensus 202 ~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~ 275 (310)
. ....++.++++.+...+|+++| ||| +++++.+++++|++||.|.|+||.+.||...++++++.++.+
T Consensus 142 --~-~~~G~~~l~~~~~~~~iP~vAI--GGi-~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~ 209 (211)
T COG0352 142 --A-PPLGLEGLREIRELVNIPVVAI--GGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDE 209 (211)
T ss_pred --C-CccCHHHHHHHHHhCCCCEEEE--cCC-CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhh
Confidence 0 1235778888888777999777 999 699999999999999999999999999999999999998754
No 19
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.75 E-value=1.4e-16 Score=142.29 Aligned_cols=188 Identities=22% Similarity=0.291 Sum_probs=135.5
Q ss_pred cCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE---eecc-----c-c-c
Q 037779 35 RGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM---AKAR-----I-G-H 103 (310)
Q Consensus 35 ~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~---~kd~-----i-~-~ 103 (310)
.++.+.+..+ .++++++.++|+.+++.. .++.++++++.+++|++ .+|+ + + +
T Consensus 15 ~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-----------------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~ 77 (221)
T PRK01130 15 PGEPLHSPEIMAAMALAAVQGGAVGIRAN-----------------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT 77 (221)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCeEEEcC-----------------CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence 3445554444 378999999999988421 16789999999999997 4452 2 2 2
Q ss_pred hHHHHHHHHcCCCeeeec-CC------CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHH
Q 037779 104 FVEAQILEAIGVDYVDES-EV------LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVE 176 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~~~-~~------~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~ 176 (310)
.++++.+.++|||.|... .. .+..++++.++++ .+++++++++|.++++++.+.|+|++.++....++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~--- 153 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEE--- 153 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecC---
Confidence 357889999999987632 11 2334566666654 789999999999999999999999998753222211
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
.. . ......++++.+++..++|| +++|||++++++.+++++|||+|++||+|+
T Consensus 154 ---------------~~-~---------~~~~~~~~i~~i~~~~~iPv--ia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 154 ---------------TK-K---------PEEPDFALLKELLKAVGCPV--IAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred ---------------CC-C---------CCCcCHHHHHHHHHhCCCCE--EEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 00 0 01234677888887768999 678999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 037779 257 KSGDPVRRARAIVQAVT 273 (310)
Q Consensus 257 ~~~dp~~~~~~~~~~~~ 273 (310)
+.++| .+.|.+.+.
T Consensus 207 ~~~~~---~~~~~~~~~ 220 (221)
T PRK01130 207 RPEEI---TKWFVDALK 220 (221)
T ss_pred CCHHH---HHHHHHHhh
Confidence 86555 445555543
No 20
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.74 E-value=4.1e-16 Score=138.51 Aligned_cols=213 Identities=22% Similarity=0.259 Sum_probs=161.4
Q ss_pred cccceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779 27 KVGLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI 101 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i 101 (310)
+.+.+++|.+|+... ..+| +.|+.|.+.||.+++.. +.|. +|.|. ..|.+.+++|.+.++.||.+...|
T Consensus 11 ~~G~~VRL~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlV---DLdg-A~~g~--~~n~~~i~~i~~~~~~~vQvGGGI 84 (241)
T COG0106 11 KDGKVVRLVQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLV---DLDG-AKAGG--PRNLEAIKEILEATDVPVQVGGGI 84 (241)
T ss_pred eCCEEEEeecccCCcceEecCCHHHHHHHHHHcCCcEEEEe---eccc-cccCC--cccHHHHHHHHHhCCCCEEeeCCc
Confidence 367899999999865 3344 89999999999998643 2333 45433 567899999999999999999999
Q ss_pred cchHHHHHHHHcCCCeee-ec-CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-CC-chHHH
Q 037779 102 GHFVEAQILEAIGVDYVD-ES-EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-TG-NIVEA 177 (310)
Q Consensus 102 ~~~~~~~~~~~aGad~v~-~~-~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~~-~~~~~ 177 (310)
.+.+.++.+.++|++.|+ .+ ...+|..+.+.+++.+-.+.+.++++.-+. .++||.. ++ ...+.
T Consensus 85 Rs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~v------------av~GW~e~s~~~~~~l 152 (241)
T COG0106 85 RSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKV------------AVSGWQEDSGVELEEL 152 (241)
T ss_pred CCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcc------------ccccccccccCCHHHH
Confidence 888899999999999988 44 445566666666666644777777766322 4556632 22 44455
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVF 256 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~ 256 (310)
.+...+.+.....++.+++|+++ .++++++...+.+..++|| +++|||+|.+|++.+.+. |+.|+++|+||+
T Consensus 153 ~~~~~~~g~~~ii~TdI~~DGtl-----~G~n~~l~~~l~~~~~ipv--iaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 153 AKRLEEVGLAHILYTDISRDGTL-----SGPNVDLVKELAEAVDIPV--IASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred HHHHHhcCCCeEEEEeccccccc-----CCCCHHHHHHHHHHhCcCE--EEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 56666565555666777888774 4668999999998889999 789999999999999999 999999999999
Q ss_pred cCC-CHHHH
Q 037779 257 KSG-DPVRR 264 (310)
Q Consensus 257 ~~~-dp~~~ 264 (310)
... ++.++
T Consensus 226 ~g~~~l~ea 234 (241)
T COG0106 226 EGKFTLEEA 234 (241)
T ss_pred cCCCCHHHH
Confidence 875 34433
No 21
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.73 E-value=3.2e-16 Score=139.80 Aligned_cols=184 Identities=23% Similarity=0.317 Sum_probs=135.4
Q ss_pred eeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe---ecc------c
Q 037779 32 QMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA---KAR------I 101 (310)
Q Consensus 32 ~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~---kd~------i 101 (310)
|.+.+|.+.+..+ .++++++.++|+..++ . + +++.++.+++.+++|++. +++ +
T Consensus 16 ~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~--------~----~-----~~~~~~~i~~~~~iPil~~~~~~~~~~~~~i 78 (219)
T cd04729 16 QALPGEPLHSPEIMAAMALAAVQGGAVGIR--------A----N-----GVEDIRAIRARVDLPIIGLIKRDYPDSEVYI 78 (219)
T ss_pred cCCCCCCcCcHHHHHHHHHHHHHCCCeEEE--------c----C-----CHHHHHHHHHhCCCCEEEEEecCCCCCCcee
Confidence 3444577766555 3789999999999863 1 1 267889999888999973 444 1
Q ss_pred c-chHHHHHHHHcCCCeeeec-CC------CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCc
Q 037779 102 G-HFVEAQILEAIGVDYVDES-EV------LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 102 ~-~~~~~~~~~~aGad~v~~~-~~------~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~ 173 (310)
+ +.++++.+.++|||.|... .. ....++++.+++.+ +++++++++|.+++..+.+.|+|++.++....++.
T Consensus 79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 79 TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEE 157 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHHcCCCEEEccCcccccc
Confidence 2 2347889999999988631 11 13456666666655 68999999999999999999999997752222211
Q ss_pred hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
.. . .....++.++.+++..++|| ++.|||++++++.+++++|||+|++||
T Consensus 158 ------------------~~-~---------~~~~~~~~l~~i~~~~~ipv--ia~GGI~~~~~~~~~l~~GadgV~vGs 207 (219)
T cd04729 158 ------------------TA-K---------TEDPDFELLKELRKALGIPV--IAEGRINSPEQAAKALELGADAVVVGS 207 (219)
T ss_pred ------------------cc-C---------CCCCCHHHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHCCCCEEEEch
Confidence 00 0 01235678888887668999 678999999999999999999999999
Q ss_pred ccccCCCHHH
Q 037779 254 GVFKSGDPVR 263 (310)
Q Consensus 254 ai~~~~dp~~ 263 (310)
+|++.+||..
T Consensus 208 al~~~~~~~~ 217 (219)
T cd04729 208 AITRPEHITG 217 (219)
T ss_pred HHhChHhHhh
Confidence 9999988764
No 22
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.70 E-value=1e-15 Score=136.63 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=130.7
Q ss_pred HHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779 45 PEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E 122 (310)
Q Consensus 45 ~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~ 122 (310)
.+.++.+.++| +++| +++-...+.+.+ ......++.+++..++|++++|+ ++.+.+.|+|+||.. .
T Consensus 29 ~~~l~~al~~G~v~~v-QlR~K~l~~~~~-----~~~a~~l~~l~~~~gv~liINd~------~dlA~~~~adGVHLg~~ 96 (221)
T PRK06512 29 AKLLRAALQGGDVASV-ILPQYGLDEATF-----QKQAEKLVPVIQEAGAAALIAGD------SRIAGRVKADGLHIEGN 96 (221)
T ss_pred HHHHHHHHcCCCccEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEeCH------HHHHHHhCCCEEEECcc
Confidence 47789999999 6988 563111111111 11134455666667899999876 346788999999943 3
Q ss_pred CCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779 123 VLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 201 (310)
.+...+..+. .+.+..+.++ +|+.+++..+.+.|+||+.+. +.++.+ .++
T Consensus 97 d~~~~~~r~~---~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~G-pv~t~t---------------------K~~---- 147 (221)
T PRK06512 97 LAALAEAIEK---HAPKMIVGFGNLRDRHGAMEIGELRPDYLFFG-KLGADN---------------------KPE---- 147 (221)
T ss_pred ccCHHHHHHh---cCCCCEEEecCCCCHHHHHHhhhcCCCEEEEC-CCCCCC---------------------CCC----
Confidence 3333333322 3455777876 678888888889999999984 544321 000
Q ss_pred hhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779 202 FAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS 276 (310)
Q Consensus 202 ~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~ 276 (310)
......++++++.+..++||++| ||| +++++.+++++|++||.+.|+|++++||.+.+++|.+.+..++
T Consensus 148 ---~~p~gl~~l~~~~~~~~iPvvAI--GGI-~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~~~ 216 (221)
T PRK06512 148 ---AHPRNLSLAEWWAEMIEIPCIVQ--AGS-DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDEKA 216 (221)
T ss_pred ---CCCCChHHHHHHHHhCCCCEEEE--eCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhhcc
Confidence 01123567777777778999766 999 6999999999999999999999999999999999999987654
No 23
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.69 E-value=1.8e-15 Score=134.23 Aligned_cols=197 Identities=11% Similarity=0.008 Sum_probs=132.7
Q ss_pred eeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779 32 QMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 32 ~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~ 111 (310)
+.++...+.+. .+.++.+.++|+++| +|+-...+.+.+ ......+..+++..+.+++++++ ++.+.
T Consensus 11 ~~~~ly~i~~~--~~~l~~~l~~G~~~v-qLR~k~~~~~~~-----~~la~~l~~~~~~~~~~liInd~------~~lA~ 76 (211)
T PRK03512 11 FRLGLYPVVDS--VQWIERLLDAGVRTL-QLRIKDRRDEEV-----EADVVAAIALGRRYQARLFINDY------WRLAI 76 (211)
T ss_pred ccceEEEEECC--HHHHHHHHhCCCCEE-EEcCCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEeCH------HHHHH
Confidence 34444444433 367999999999998 563111111111 11123344556677899999865 34677
Q ss_pred HcCCCeeee-cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779 112 AIGVDYVDE-SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV 190 (310)
Q Consensus 112 ~aGad~v~~-~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (310)
+.|+|+||. ...+++.+..+. .+.+..+.+++||.+|+.++.+.|+||+.+. +.+.+
T Consensus 77 ~~~adGVHlg~~d~~~~~~r~~---~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lg-pvf~T------------------ 134 (211)
T PRK03512 77 KHQAYGVHLGQEDLETADLNAI---RAAGLRLGVSTHDDMEIDVALAARPSYIALG-HVFPT------------------ 134 (211)
T ss_pred HcCCCEEEcChHhCCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEEC-CccCC------------------
Confidence 899999983 333333333221 2456789999999999999999999999984 44322
Q ss_pred ccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
.++.+. .....++.+..+.+. .++||++| ||| +++++.+++++|++||.|.|+|++++||.+.+++|+
T Consensus 135 ---~tK~~~-----~~~~G~~~l~~~~~~~~~~PV~Ai--GGI-~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~ 203 (211)
T PRK03512 135 ---QTKQMP-----SAPQGLAQLARHVERLADYPTVAI--GGI-SLERAPAVLATGVGSIAVVSAITQAADWRAATAQLL 203 (211)
T ss_pred ---CCCCCC-----CCCCCHHHHHHHHHhcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHH
Confidence 111000 011234545555443 47899655 999 599999999999999999999999999999999999
Q ss_pred HHHHcC
Q 037779 270 QAVTNY 275 (310)
Q Consensus 270 ~~~~~~ 275 (310)
+.+...
T Consensus 204 ~~~~~~ 209 (211)
T PRK03512 204 ELAEVG 209 (211)
T ss_pred HHHhhc
Confidence 987654
No 24
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.68 E-value=6.3e-15 Score=133.22 Aligned_cols=213 Identities=17% Similarity=0.195 Sum_probs=153.5
Q ss_pred ccceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhh-hcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779 28 VGLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIR-AQGGVARMSDPQLIKQIKSSVTIPVMAKARI 101 (310)
Q Consensus 28 ~~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i 101 (310)
.+.+++|.+|.... ..+| ++|+.|.+.|+++++.. |.. ++.|. ..|.+.++++.+.+ .|+.+...+
T Consensus 11 ~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~~ga~~lhiv-----DLd~a~~g~--~~n~~~i~~i~~~~-~~v~vGGGI 82 (241)
T PRK14114 11 RGKVARMVKGKKENTIFYEKDPAELVEKLIEEGFTLIHVV-----DLSKAIENS--VENLPVLEKLSEFA-EHIQIGGGI 82 (241)
T ss_pred CCEEEEeeccccCcceEECCCHHHHHHHHHHCCCCEEEEE-----ECCCcccCC--cchHHHHHHHHhhc-CcEEEecCC
Confidence 46677787777443 3455 88999999999998654 332 23333 45688999999887 799999999
Q ss_pred cchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-C-CchHHHH
Q 037779 102 GHFVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-T-GNIVEAV 178 (310)
Q Consensus 102 ~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~-~~~~~~~ 178 (310)
.+.+.++.+.++||+.|. .+..++.+++++.+.+.+..+.+.++++. | .+.++|+.. + -...+.+
T Consensus 83 rs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~----------g--~v~~~gw~~~~~~~~~e~~ 150 (241)
T PRK14114 83 RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRG----------G--KVAFKGWLAEEEIDPVSLL 150 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccC----------C--EEeeCCCeecCCCCHHHHH
Confidence 888899999999999976 56555556666666443222434444432 2 344555532 2 1345666
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-----C-CCEEEEc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-----G-CDGVFVG 252 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-----G-adgV~VG 252 (310)
+.+.+++.....+..++.|++ ..+++.++++.+.+..++|| |++|||++.+|+.++.++ | ++|+++|
T Consensus 151 ~~~~~~g~~~ii~tdI~rdGt-----~~G~d~el~~~l~~~~~~pv--iasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg 223 (241)
T PRK14114 151 KRLKEYGLEEIVHTEIEKDGT-----LQEHDFSLTRKIAIEAEVKV--FAAGGISSENSLKTAQRVHRETNGLLKGVIVG 223 (241)
T ss_pred HHHHhcCCCEEEEEeechhhc-----CCCcCHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHhcccccCCcEEEEEEe
Confidence 666667777677777888876 34678999999988788999 789999999999999986 6 9999999
Q ss_pred cccccCCCHHHHHHH
Q 037779 253 SGVFKSGDPVRRARA 267 (310)
Q Consensus 253 sai~~~~dp~~~~~~ 267 (310)
++|+...-..+.++.
T Consensus 224 ~Al~~g~i~~~e~~~ 238 (241)
T PRK14114 224 RAFLEGILTVEVMKR 238 (241)
T ss_pred hHHHCCCCCHHHHHH
Confidence 999998755444433
No 25
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.68 E-value=3.4e-15 Score=141.05 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=132.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~~ 124 (310)
+.++.+.++|+++| +++....+.+.+ ......+..+++..+.+++++|++ +.+.+.|+|+||. ...+
T Consensus 161 ~~l~~al~~Gv~~V-QLR~K~~~~~~~-----~~~a~~L~~l~~~~~~~lIIND~v------dlAl~~~aDGVHLgq~dl 228 (347)
T PRK02615 161 EVVEAALKGGVTLV-QYRDKTADDRQR-----LEEAKKLKELCHRYGALFIVNDRV------DIALAVDADGVHLGQEDL 228 (347)
T ss_pred HHHHHHHHcCCCEE-EECCCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEeChH------HHHHHcCCCEEEeChhhc
Confidence 67889999999988 563111111111 112345667777778999988764 3678899999993 3333
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
++.+..+. .+++..+++++||.+|+..|.+.|+|||++. +.+.+ .++.+
T Consensus 229 ~~~~aR~l---lg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lG-Pvf~T---------------------~tKp~------ 277 (347)
T PRK02615 229 PLAVARQL---LGPEKIIGRSTTNPEEMAKAIAEGADYIGVG-PVFPT---------------------PTKPG------ 277 (347)
T ss_pred CHHHHHHh---cCCCCEEEEecCCHHHHHHHHHcCCCEEEEC-CCcCC---------------------CCCCC------
Confidence 33333222 3456789999999999999999999999985 43321 11100
Q ss_pred cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~ 275 (310)
.....++.++.+.+..++||++ -||| +++++.+++++|++||.|+|+|++++||...++.|.+.+...
T Consensus 278 ~~~~Gle~l~~~~~~~~iPv~A--iGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~ 345 (347)
T PRK02615 278 KAPAGLEYLKYAAKEAPIPWFA--IGGI-DKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE 345 (347)
T ss_pred CCCCCHHHHHHHHHhCCCCEEE--ECCC-CHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence 0123477788887767899954 5999 599999999999999999999999999999999999988754
No 26
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.67 E-value=2.3e-15 Score=144.43 Aligned_cols=188 Identities=14% Similarity=0.051 Sum_probs=131.5
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~ 123 (310)
.+.++.+.++|++.| +||....+.+.+ ......+.++++..+.+++++|+ ++.+.+.||++|| ..+.
T Consensus 220 ~~~ve~aL~aGv~~V-QLReK~ls~~el-----~~la~~l~~l~~~~gv~LiIND~------~dlAl~~gAdGVHLGQeD 287 (437)
T PRK12290 220 VEWIERLLPLGINTV-QLRIKDPQQADL-----EQQIIRAIALGREYNAQVFINDY------WQLAIKHQAYGVHLGQED 287 (437)
T ss_pred HHHHHHHHhCCCCEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEECH------HHHHHHcCCCEEEcChHH
Confidence 467999999999998 564111111111 11123344555667899988865 4577889999998 4444
Q ss_pred CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
++..+..+. .+.+..+++++|+.+|+.+|.+.|+|||++ |+.+.+ .++..
T Consensus 288 L~~~~aR~i---lg~~~iIGvStHs~eEl~~A~~~gaDYI~l-GPIFpT---------------------~TK~~----- 337 (437)
T PRK12290 288 LEEANLAQL---TDAGIRLGLSTHGYYELLRIVQIQPSYIAL-GHIFPT---------------------TTKQM----- 337 (437)
T ss_pred cchhhhhhh---cCCCCEEEEecCCHHHHHHHhhcCCCEEEE-CCccCC---------------------CCCCC-----
Confidence 443333322 245688999999999999999999999998 454322 11100
Q ss_pred ccCCCcHHHHHHHHhc---------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 204 KNIAAPYDLVMQTKQL---------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~---------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
....-.++.++.+.+. .++||++| ||| +++++.+++++|++||.|-|+|++++||.+.+++|.+.++.
T Consensus 338 ~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI--GGI-~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 338 PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI--GGI-DQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE 414 (437)
T ss_pred CCCCCCHHHHHHHHHHhhhccccccCCCCEEEE--CCc-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence 0011134444444332 26899776 999 69999999999999999999999999999999999999988
Q ss_pred CCC
Q 037779 275 YSD 277 (310)
Q Consensus 275 ~~~ 277 (310)
+..
T Consensus 415 ~~~ 417 (437)
T PRK12290 415 NQL 417 (437)
T ss_pred cCC
Confidence 765
No 27
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.67 E-value=1.1e-14 Score=131.81 Aligned_cols=199 Identities=22% Similarity=0.228 Sum_probs=136.3
Q ss_pred ccceeeecCCccc---cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779 28 VGLAQMLRGGVIM---DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH 103 (310)
Q Consensus 28 ~~~~~~l~~g~i~---~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~ 103 (310)
.+.++++.+|... ...+| ++|+.|.+.|++++++. |...-.| ...|.+.++++++.+++|+++...+.+
T Consensus 14 ~G~~V~~~~g~~~~~~~~~dp~~~a~~~~~~g~~~l~iv-----DLd~~~g--~~~n~~~i~~i~~~~~~pv~vgGGirs 86 (241)
T PRK14024 14 DGQAVRLVQGEAGSETSYGSPLDAALAWQRDGAEWIHLV-----DLDAAFG--RGSNRELLAEVVGKLDVKVELSGGIRD 86 (241)
T ss_pred CCEEEEeecccccCceECCCHHHHHHHHHHCCCCEEEEE-----eccccCC--CCccHHHHHHHHHHcCCCEEEcCCCCC
Confidence 4667777776632 23355 89999999999998654 2221112 245689999999999999999999988
Q ss_pred hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecC--------------CHHH-HHHHHHhCCCEEEEe
Q 037779 104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCR--------------NLGE-SLRRIREGAAMIRTK 166 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~--------------t~~e-a~~a~~~Gad~I~v~ 166 (310)
.++++.+.++||+.+. .+..+..+++.+.+.+ .+-.+.+.++++ ++.+ +++..+.|++.+.++
T Consensus 87 ~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~ 166 (241)
T PRK14024 87 DESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVT 166 (241)
T ss_pred HHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEE
Confidence 8999999999999977 5555554444444433 221222222331 1122 333445566655555
Q ss_pred cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH---
Q 037779 167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ--- 243 (310)
Q Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~--- 243 (310)
+. +.++. ..++++++++.+++..++|| |++|||.|++|+.++.+
T Consensus 167 ~~--------------------------~~~g~-----~~G~d~~~i~~i~~~~~ipv--iasGGi~s~~D~~~l~~~~~ 213 (241)
T PRK14024 167 DV--------------------------TKDGT-----LTGPNLELLREVCARTDAPV--VASGGVSSLDDLRALAELVP 213 (241)
T ss_pred ee--------------------------cCCCC-----ccCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHhhhcc
Confidence 32 22222 12457999999998888999 78999999999999864
Q ss_pred cCCCEEEEccccccCCCHHHHHH
Q 037779 244 LGCDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 244 ~GadgV~VGsai~~~~dp~~~~~ 266 (310)
.|++||++|++++....+.+.+.
T Consensus 214 ~GvdgV~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 214 LGVEGAIVGKALYAGAFTLPEAL 236 (241)
T ss_pred CCccEEEEeHHHHcCCCCHHHHH
Confidence 49999999999999886655443
No 28
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=99.66 E-value=2.4e-15 Score=131.60 Aligned_cols=211 Identities=21% Similarity=0.247 Sum_probs=155.0
Q ss_pred cccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779 39 IMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY 117 (310)
Q Consensus 39 i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~ 117 (310)
+++.+|| ++|+.|.+.|||.+..| |+.+.. ..+....+.++++.+.+.+|+.+...+...+.++.++.+|||.
T Consensus 26 lrd~GDpVelA~~Y~e~GADElvFl-----DItAs~-~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADK 99 (256)
T COG0107 26 LRDAGDPVELAKRYNEEGADELVFL-----DITASS-EGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADK 99 (256)
T ss_pred hhhcCChHHHHHHHHHcCCCeEEEE-----eccccc-ccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCe
Confidence 4566775 89999999999999666 665543 1234457889999999999999999998888999999999999
Q ss_pred ee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHH-hCCC-EEEEe-cCCCCCchHHHHHHHHH---hhcceec
Q 037779 118 VD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIR-EGAA-MIRTK-GEAGTGNIVEAVRHVRS---VMGDIRV 190 (310)
Q Consensus 118 v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~-~Gad-~I~v~-g~~~~~~~~~~~~~~~~---~~~~~~~ 190 (310)
|. .++.+..++++..+...+-.+.+++.+..... .. .... .|.++ |...++ .++++|+++ +++....
T Consensus 100 VSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~----~~g~~~~~~v~~~gGr~~t~--~d~~~Wa~~~e~~GAGEIl 173 (256)
T COG0107 100 VSINSAAVKDPELITEAADRFGSQCIVVAIDAKRV----PDGENGWYEVFTHGGREDTG--LDAVEWAKEVEELGAGEIL 173 (256)
T ss_pred eeeChhHhcChHHHHHHHHHhCCceEEEEEEeeec----cCCCCCcEEEEecCCCcCCC--cCHHHHHHHHHHcCCceEE
Confidence 97 45445556677666654323666666533211 10 1112 23333 333333 456666665 6667889
Q ss_pred ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHH
Q 037779 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~~ 268 (310)
++.++.|++ ..+.+.++++.+++..++|| ||+||.+++++..+++..| ||+++..|-|...+-....++++
T Consensus 174 LtsmD~DGt-----k~GyDl~l~~~v~~~v~iPv--IASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~y 245 (256)
T COG0107 174 LTSMDRDGT-----KAGYDLELTRAVREAVNIPV--IASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEY 245 (256)
T ss_pred Eeeeccccc-----ccCcCHHHHHHHHHhCCCCE--EecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHH
Confidence 999998876 35778999999999999999 7899999999999999776 99999999999987654444444
No 29
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.65 E-value=2.1e-14 Score=129.75 Aligned_cols=199 Identities=23% Similarity=0.229 Sum_probs=133.9
Q ss_pred ccceeeecCCccc----cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779 28 VGLAQMLRGGVIM----DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG 102 (310)
Q Consensus 28 ~~~~~~l~~g~i~----~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~ 102 (310)
.+.++++.+|... ...+| ++++.|.+.|+++++... .+. ... ....+.+.++++++.+++|+++...+.
T Consensus 13 ~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~~G~~~l~i~d---l~~-~~~--~~~~~~~~i~~i~~~~~~~l~v~GGi~ 86 (241)
T PRK13585 13 GGKCVQLVQGEPGTETVSYGDPVEVAKRWVDAGAETLHLVD---LDG-AFE--GERKNAEAIEKIIEAVGVPVQLGGGIR 86 (241)
T ss_pred CCeEEEeeccccCCceEECCCHHHHHHHHHHcCCCEEEEEe---chh-hhc--CCcccHHHHHHHHHHcCCcEEEcCCcC
Confidence 4556666666422 23454 899999999999985441 111 111 124568899999999999999988888
Q ss_pred chHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCC-CcEEeecC---------------CH-HHHHHHHHhCCCEE
Q 037779 103 HFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFR-VPFVCGCR---------------NL-GESLRRIREGAAMI 163 (310)
Q Consensus 103 ~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~-l~v~~~v~---------------t~-~ea~~a~~~Gad~I 163 (310)
+.+.++.+.++||+.|+ .+..+..+++...+.+ .+.+ +.+.++++ ++ +.++.+.+.|++.+
T Consensus 87 ~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i 166 (241)
T PRK13585 87 SAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSI 166 (241)
T ss_pred CHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 77889999999999988 4433333333444433 2222 33444543 22 23445556677766
Q ss_pred EEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH
Q 037779 164 RTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 164 ~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~ 243 (310)
.++.. +.++. ..+.++++++.+.+..++|| +++|||.+++|+.++.+
T Consensus 167 ~~~~~--------------------------~~~g~-----~~g~~~~~i~~i~~~~~iPv--ia~GGI~~~~di~~~~~ 213 (241)
T PRK13585 167 LFTNV--------------------------DVEGL-----LEGVNTEPVKELVDSVDIPV--IASGGVTTLDDLRALKE 213 (241)
T ss_pred EEEee--------------------------cCCCC-----cCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHH
Confidence 65422 11110 12346888888888778999 67899999999999999
Q ss_pred cCCCEEEEccccccCCCHHHHH
Q 037779 244 LGCDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 244 ~GadgV~VGsai~~~~dp~~~~ 265 (310)
+|+++|++||+++..+.....+
T Consensus 214 ~Ga~gv~vgsa~~~~~~~~~~~ 235 (241)
T PRK13585 214 AGAAGVVVGSALYKGKFTLEEA 235 (241)
T ss_pred cCCCEEEEEHHHhcCCcCHHHH
Confidence 9999999999999987654443
No 30
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.65 E-value=2e-14 Score=129.16 Aligned_cols=192 Identities=22% Similarity=0.260 Sum_probs=129.1
Q ss_pred cceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhh-hcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779 29 GLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIR-AQGGVARMSDPQLIKQIKSSVTIPVMAKARIG 102 (310)
Q Consensus 29 ~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~ 102 (310)
+.++++..|+... ..+| +.++.|.+.|++++++. |.. .+.|. ..+.+.++++++.+++|+++.+++.
T Consensus 12 g~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~-----dld~~~~g~--~~~~~~i~~i~~~~~~pv~~~GGI~ 84 (233)
T PRK00748 12 GKCVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLV-----DLDGAKAGK--PVNLELIEAIVKAVDIPVQVGGGIR 84 (233)
T ss_pred CeEEEccccccccceEecCCHHHHHHHHHHcCCCEEEEE-----eCCccccCC--cccHHHHHHHHHHCCCCEEEcCCcC
Confidence 3444455555443 2354 78999999999998665 332 22332 4578899999999999999999998
Q ss_pred chHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecC---------------CHHHHH-HHHHhCCCEEE
Q 037779 103 HFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCR---------------NLGESL-RRIREGAAMIR 164 (310)
Q Consensus 103 ~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~---------------t~~ea~-~a~~~Gad~I~ 164 (310)
+.++++.+.++||+.|+ .+..++.++..+.+.+ ..-.+.+.++++ ++.|.. ...+.|++.+.
T Consensus 85 ~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii 164 (233)
T PRK00748 85 SLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAII 164 (233)
T ss_pred CHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEE
Confidence 88889999999999987 4444443333443433 211244444442 112222 22334555444
Q ss_pred EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779 165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL 244 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~ 244 (310)
++. .++++. ..+.++++++.+++..++|+ |++|||.|++|+.++++.
T Consensus 165 ~~~--------------------------~~~~g~-----~~G~d~~~i~~l~~~~~ipv--ia~GGi~~~~di~~~~~~ 211 (233)
T PRK00748 165 YTD--------------------------ISRDGT-----LSGPNVEATRELAAAVPIPV--IASGGVSSLDDIKALKGL 211 (233)
T ss_pred Eee--------------------------ecCcCC-----cCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHc
Confidence 431 122211 12457899999988778999 789999999999999998
Q ss_pred C-CCEEEEccccccCCC
Q 037779 245 G-CDGVFVGSGVFKSGD 260 (310)
Q Consensus 245 G-adgV~VGsai~~~~d 260 (310)
| ++||++|++|+....
T Consensus 212 g~~~gv~vg~a~~~~~~ 228 (233)
T PRK00748 212 GAVEGVIVGRALYEGKF 228 (233)
T ss_pred CCccEEEEEHHHHcCCc
Confidence 8 999999999998753
No 31
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.65 E-value=2.4e-14 Score=128.45 Aligned_cols=193 Identities=23% Similarity=0.262 Sum_probs=129.9
Q ss_pred cceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779 29 GLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH 103 (310)
Q Consensus 29 ~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~ 103 (310)
+.++++.+|.... ..+| +.|+.|.+.|+++++++ +....+.|. ..+.+.++++++.+++|+++++++.+
T Consensus 10 g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~----dl~~~~~g~--~~~~~~i~~i~~~~~~pi~~ggGI~~ 83 (230)
T TIGR00007 10 GKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVV----DLDGAKEGG--PVNLPVIKKIVRETGVPVQVGGGIRS 83 (230)
T ss_pred CEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEE----eCCccccCC--CCcHHHHHHHHHhcCCCEEEeCCcCC
Confidence 4445555555332 2355 78999999999999776 222233333 45688999999999999999999988
Q ss_pred hHHHHHHHHcCCCeee-ecCCCC-hhHHHHHHHhcCCC-CcEEeecC---------------CHHH-HHHHHHhCCCEEE
Q 037779 104 FVEAQILEAIGVDYVD-ESEVLT-PADEENHINKHNFR-VPFVCGCR---------------NLGE-SLRRIREGAAMIR 164 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~-~~~~~~-~~~~~~~~~~~~~~-l~v~~~v~---------------t~~e-a~~a~~~Gad~I~ 164 (310)
.++++.+.++||+.++ .+..+. +..+.+..+..+.. +.+.++++ ++.+ ++...+.|++.+.
T Consensus 84 ~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii 163 (230)
T TIGR00007 84 LEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGII 163 (230)
T ss_pred HHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEE
Confidence 8889999999999987 433333 34444444444322 33333322 2222 3334456666544
Q ss_pred EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779 165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL 244 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~ 244 (310)
++.. +.++. ..+.++++++.+.+..++|+ +++|||.+++|+.+++++
T Consensus 164 ~~~~--------------------------~~~g~-----~~g~~~~~i~~i~~~~~ipv--ia~GGi~~~~di~~~~~~ 210 (230)
T TIGR00007 164 YTDI--------------------------SRDGT-----LSGPNFELTKELVKAVNVPV--IASGGVSSIDDLIALKKL 210 (230)
T ss_pred EEee--------------------------cCCCC-----cCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHC
Confidence 4311 11111 12446888888888778999 789999999999999999
Q ss_pred CCCEEEEccccccCCC
Q 037779 245 GCDGVFVGSGVFKSGD 260 (310)
Q Consensus 245 GadgV~VGsai~~~~d 260 (310)
||+||++||+++...-
T Consensus 211 Gadgv~ig~a~~~~~~ 226 (230)
T TIGR00007 211 GVYGVIVGKALYEGKI 226 (230)
T ss_pred CCCEEEEeHHHHcCCC
Confidence 9999999999998653
No 32
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.64 E-value=3.1e-14 Score=129.06 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=148.7
Q ss_pred ccceeeecCCcccc-------------C----CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779 28 VGLAQMLRGGVIMD-------------V----VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89 (310)
Q Consensus 28 ~~~~~~l~~g~i~~-------------~----~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~ 89 (310)
.+.+++|.+|.... . .+| ++|+.|.+.|+++++.. |... | ...|.+.+++|++
T Consensus 11 ~Gk~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvV-----DLdg--g--~~~n~~~i~~i~~ 81 (262)
T PLN02446 11 KGKVKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVI-----MLGA--D--DASLAAALEALRA 81 (262)
T ss_pred CCEEEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEE-----ECCC--C--CcccHHHHHHHHh
Confidence 57788999998844 1 355 89999999999998765 2221 2 2456889999998
Q ss_pred hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCC-----hhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCE
Q 037779 90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLT-----PADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAM 162 (310)
Q Consensus 90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~-----~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~ 162 (310)
+.+||.+...+.. +.++.++++||+.|. .+...+ |..+.+.+++.+.. +.+.++++- ..|--.
T Consensus 82 -~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~--------~~g~~~ 151 (262)
T PLN02446 82 -YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK--------KDGRYY 151 (262)
T ss_pred -CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe--------cCCCEE
Confidence 8899999988875 889999999999998 443333 44444444444443 455555531 113225
Q ss_pred EEEecCCC-CC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779 163 IRTKGEAG-TG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 163 I~v~g~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~ 240 (310)
|.++|+.. ++ +..+.+....+.+.....++.+++|+++ .+++.++++.+.+..++|| ||+|||+|.+|+.+
T Consensus 152 Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl-----~G~d~el~~~l~~~~~ipV--IASGGv~sleDi~~ 224 (262)
T PLN02446 152 VVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKR-----LGIDEELVALLGEHSPIPV--TYAGGVRSLDDLER 224 (262)
T ss_pred EEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcc-----cCCCHHHHHHHHhhCCCCE--EEECCCCCHHHHHH
Confidence 67777743 22 3334445555555566677778888763 5778999999999889999 78999999999999
Q ss_pred HHHc--CCCEEEEcccc--ccCC
Q 037779 241 MMQL--GCDGVFVGSGV--FKSG 259 (310)
Q Consensus 241 ~~~~--GadgV~VGsai--~~~~ 259 (310)
+.++ |..++++|++| |...
T Consensus 225 L~~~g~g~~gvIvGkAl~~y~g~ 247 (262)
T PLN02446 225 VKVAGGGRVDVTVGSALDIFGGN 247 (262)
T ss_pred HHHcCCCCEEEEEEeeHHHhCCC
Confidence 9997 58999999999 7655
No 33
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.64 E-value=1.4e-14 Score=130.54 Aligned_cols=205 Identities=14% Similarity=0.123 Sum_probs=145.1
Q ss_pred ccceeeecCCccccC----CCH-HHHHHHHH-cCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779 28 VGLAQMLRGGVIMDV----VTP-EQARIAEE-AGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI 101 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~----~~~-~~a~~~~~-~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i 101 (310)
.+.+++|++|..... .+| +.|+.|.+ .||+++++. +.|. .+.|. ..|.+.++++++.+++|+.+...+
T Consensus 12 ~G~~Vr~~~G~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~iv---DLd~-a~~~~--~~n~~~I~~i~~~~~~pi~vGGGI 85 (234)
T PRK13587 12 GSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIV---DLIG-AKAQH--AREFDYIKSLRRLTTKDIEVGGGI 85 (234)
T ss_pred CCEEEEcCcccCCCceEeCCCHHHHHHHHHhccCCCEEEEE---ECcc-cccCC--cchHHHHHHHHhhcCCeEEEcCCc
Confidence 577888988887653 355 89999999 799998654 1121 22222 467899999999999999999999
Q ss_pred cchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCC--CCchHHH
Q 037779 102 GHFVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAG--TGNIVEA 177 (310)
Q Consensus 102 ~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~--~~~~~~~ 177 (310)
.+.+.++.+.++||+.+. .+..++.+++.+.+.+.+.+ +.+.++++. | .+.++|+.. ..+..+.
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~----------g--~v~~~gw~~~~~~~~~~~ 153 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYG----------E--DIKVNGWEEDTELNLFSF 153 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeC----------C--EEEecCCcccCCCCHHHH
Confidence 888999999999999987 55555555666666553323 334444322 1 334444421 1233455
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++...+++.....+..++.|++ ..+.+.++++.+.+..++|| +++|||.+++|+.+++++|+++|++||++++
T Consensus 154 ~~~~~~~g~~~ii~tdi~~dGt-----~~G~~~~li~~l~~~~~ipv--i~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 154 VRQLSDIPLGGIIYTDIAKDGK-----MSGPNFELTGQLVKATTIPV--IASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHcCCCEEEEecccCcCC-----CCccCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 5555555544445555666654 24667888999988778999 7799999999999999999999999999997
No 34
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.64 E-value=4.9e-14 Score=126.57 Aligned_cols=194 Identities=25% Similarity=0.294 Sum_probs=131.0
Q ss_pred ccceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchh-hhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779 28 VGLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADI-RAQGGVARMSDPQLIKQIKSSVTIPVMAKARI 101 (310)
Q Consensus 28 ~~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~-r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i 101 (310)
.+.++++.+|.... ..+| ++|+.|.+.|++++++. |. +.+.| ...+.+.++++++.+++|+++..++
T Consensus 10 ~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~d~l~v~-----dl~~~~~~--~~~~~~~i~~i~~~~~~pv~~~GgI 82 (234)
T cd04732 10 DGKCVRLYQGDYDKKTVYSDDPVEVAKKWEEAGAKWLHVV-----DLDGAKGG--EPVNLELIEEIVKAVGIPVQVGGGI 82 (234)
T ss_pred CCEEEEeecccCCCCeEECCCHHHHHHHHHHcCCCEEEEE-----CCCccccC--CCCCHHHHHHHHHhcCCCEEEeCCc
Confidence 45566666666532 3454 89999999999998655 22 12222 2346889999999999999999999
Q ss_pred cchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCC-CCcEEeec---------------CCHHHHH-HHHHhCCCE
Q 037779 102 GHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNF-RVPFVCGC---------------RNLGESL-RRIREGAAM 162 (310)
Q Consensus 102 ~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~-~l~v~~~v---------------~t~~ea~-~a~~~Gad~ 162 (310)
.+.+.++.+.+.|||.|. .+..+..+++.+.+.+ .+. .+.+.+++ .++.+.. ...+.|++.
T Consensus 83 ~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 83 RSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 888889999999999987 3433333344444433 222 12222221 1222332 334556666
Q ss_pred EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779 163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~ 242 (310)
+.++.. +.++. ..+.++++++.+.+..++|| +++|||.+++|+.+++
T Consensus 163 iii~~~--------------------------~~~g~-----~~g~~~~~i~~i~~~~~ipv--i~~GGi~~~~di~~~~ 209 (234)
T cd04732 163 IIYTDI--------------------------SRDGT-----LSGPNFELYKELAAATGIPV--IASGGVSSLDDIKALK 209 (234)
T ss_pred EEEEee--------------------------cCCCc-----cCCCCHHHHHHHHHhcCCCE--EEecCCCCHHHHHHHH
Confidence 655422 11111 12356889999988778999 6799999999999999
Q ss_pred HcCCCEEEEccccccCCCH
Q 037779 243 QLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 243 ~~GadgV~VGsai~~~~dp 261 (310)
+.|++||++||+++....+
T Consensus 210 ~~Ga~gv~vg~~~~~~~~~ 228 (234)
T cd04732 210 ELGVAGVIVGKALYEGKIT 228 (234)
T ss_pred HCCCCEEEEeHHHHcCCCC
Confidence 9999999999999997643
No 35
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.61 E-value=5.7e-14 Score=126.54 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=139.7
Q ss_pred ccceeeecCCccc----------cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779 28 VGLAQMLRGGVIM----------DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM 96 (310)
Q Consensus 28 ~~~~~~l~~g~i~----------~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~ 96 (310)
.+.++++.+|... ...+| ++|+.|.+.|+++++.. |.....| ...+.+.++++.+.+.+|++
T Consensus 10 ~G~~V~~~~G~~~~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~-----DLd~~~~--~~~n~~~i~~i~~~~~~~v~ 82 (233)
T cd04723 10 DGVVVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKELGFRGLYIA-----DLDAIMG--RGDNDEAIRELAAAWPLGLW 82 (233)
T ss_pred CCEEEEeeccChhhccccccCcccCCCHHHHHHHHHHCCCCEEEEE-----eCccccC--CCccHHHHHHHHHhCCCCEE
Confidence 4667777776643 22355 89999999999998554 2221112 24568899999999999999
Q ss_pred eeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCc
Q 037779 97 AKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 97 ~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~ 173 (310)
+...+...+.++.+..+||+.+. .+...+. ++.+.+.+ .+- .+.+.++++...- . + .....+
T Consensus 83 vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~------------~-~-~~~~~~ 147 (233)
T cd04723 83 VDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQL------------L-K-PTDFIG 147 (233)
T ss_pred EecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCee------------c-c-ccCcCC
Confidence 99999888899999999999987 5555444 55444443 322 3445555533100 0 1 111123
Q ss_pred hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
..+.++...+. .+...+..++.++. ..+.+.++++.+.+..++|| +++|||.|++|+.++++.|+++|++||
T Consensus 148 ~~~~~~~~~~~-~~~li~~di~~~G~-----~~g~~~~~~~~i~~~~~ipv--i~~GGi~s~edi~~l~~~G~~~vivGs 219 (233)
T cd04723 148 PEELLRRLAKW-PEELIVLDIDRVGS-----GQGPDLELLERLAARADIPV--IAAGGVRSVEDLELLKKLGASGALVAS 219 (233)
T ss_pred HHHHHHHHHHh-CCeEEEEEcCcccc-----CCCcCHHHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHcCCCEEEEeh
Confidence 44555555555 44344444444432 23567888888888778999 679999999999999999999999999
Q ss_pred ccccCCCHH
Q 037779 254 GVFKSGDPV 262 (310)
Q Consensus 254 ai~~~~dp~ 262 (310)
+++...-+.
T Consensus 220 al~~g~~~~ 228 (233)
T cd04723 220 ALHDGGLTL 228 (233)
T ss_pred HHHcCCCCH
Confidence 999986443
No 36
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.61 E-value=3.9e-14 Score=125.15 Aligned_cols=186 Identities=21% Similarity=0.276 Sum_probs=122.2
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
.+.++.+.++|+++++ ++ .....+.........++.++...++++++++ .++.+.++|+|+++.+...
T Consensus 24 ~~~~~~~~~~gv~~v~-lr-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~a~~~gad~vh~~~~~ 91 (212)
T PRK00043 24 LEVVEAALEGGVTLVQ-LR-----EKGLDTRERLELARALKELCRRYGVPLIVND------RVDLALAVGADGVHLGQDD 91 (212)
T ss_pred HHHHHHHHhcCCCEEE-Ee-----CCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecCccc
Confidence 3678889999999984 42 1100000000012223333344577887653 4567888999999854221
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
.+....+.+ ++.+..+.+.+||..|+.++.+.|+|+|++.....+.. .++ .
T Consensus 92 ~~~~~~~~~--~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~---------------------~~~------~ 142 (212)
T PRK00043 92 LPVADARAL--LGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPT---------------------KKD------A 142 (212)
T ss_pred CCHHHHHHH--cCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCC---------------------CCC------C
Confidence 121222212 34667888999999999999999999998752211110 000 0
Q ss_pred cCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 205 NIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
.....++.++.+++..+ +|| ++.||| +++++.+++++|+++|++||+|++++||.+.++++++.++.
T Consensus 143 ~~~~g~~~~~~~~~~~~~~~v--~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 143 KAPQGLEGLREIRAAVGDIPI--VAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred CCCCCHHHHHHHHHhcCCCCE--EEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 00112667777776544 899 567999 69999999999999999999999999999999999887764
No 37
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.60 E-value=1.7e-13 Score=121.13 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecc-ccchHHHHHHHHcCCCeeeecCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR-IGHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~-i~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
+.++++.++|+..+ .+ +... ....+.++.+++...-++.+.-. +.+.++++.+.++||++++.+..
T Consensus 26 ~~~~a~~~gGi~~i-Ev-------t~~~----~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~- 92 (206)
T PRK09140 26 AHVGALIEAGFRAI-EI-------PLNS----PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT- 92 (206)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCC----ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC-
Confidence 67999999999988 33 2221 11155788888777544444322 22447889999999999985432
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..++.+.... .+++++.+++|++|+..+.+.|+||++++.. .
T Consensus 93 -~~~v~~~~~~--~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa---~-------------------------------- 134 (206)
T PRK09140 93 -DPEVIRRAVA--LGMVVMPGVATPTEAFAALRAGAQALKLFPA---S-------------------------------- 134 (206)
T ss_pred -CHHHHHHHHH--CCCcEEcccCCHHHHHHHHHcCCCEEEECCC---C--------------------------------
Confidence 3455554543 5789999999999999999999999998521 0
Q ss_pred cCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC----CCHHHHHHHHHHHHH
Q 037779 205 NIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----GDPVRRARAIVQAVT 273 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~----~dp~~~~~~~~~~~~ 273 (310)
....+.++.+++.. ++|++ +.||| +++++.+++++|+++|.+||+|+++ +++.+.++++++.++
T Consensus 135 --~~G~~~l~~l~~~~~~~ipvv--aiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 135 --QLGPAGIKALRAVLPPDVPVF--AVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred --CCCHHHHHHHHhhcCCCCeEE--EECCC-CHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 01244556665543 48995 56999 6999999999999999999999986 678888888877664
No 38
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=99.59 E-value=7.5e-15 Score=129.29 Aligned_cols=154 Identities=27% Similarity=0.417 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCCCC--CchHHHHHHHHHhhcc-eecccccCc
Q 037779 128 DEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEAGT--GNIVEAVRHVRSVMGD-IRVLRNMDD 196 (310)
Q Consensus 128 ~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~~~--~~~~~~~~~~~~~~~~-~~~l~~~~~ 196 (310)
.+.+.+...++. ++...+|+|.+|+.+..+ .|-++|++. +..++ ++..+++++++++.++ |.+++|+++
T Consensus 53 ~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~ 132 (247)
T PF05690_consen 53 NILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD 132 (247)
T ss_dssp HCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred cHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCC
Confidence 344444433444 677788999999987664 366899864 44432 6778999999999997 999999999
Q ss_pred hhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 197 DEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 197 d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
|+++.. .+++. +...++.+.+..++|| |+.+||++|+|+.+++++|||+|++.|+|.+
T Consensus 133 D~v~akrL~d~GcaavMPlgsPIGSg~Gi~-n~~~l~~i~~~~~vPv--IvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 133 DPVLAKRLEDAGCAAVMPLGSPIGSGRGIQ-NPYNLRIIIERADVPV--IVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp -HHHHHHHHHTT-SEBEEBSSSTTT---SS-THHHHHHHHHHGSSSB--EEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred CHHHHHHHHHCCCCEEEecccccccCcCCC-CHHHHHHHHHhcCCcE--EEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 999652 22333 3456667766668999 5589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779 258 SGDPVRRARAIVQAVTNYSDPDVLAEV 284 (310)
Q Consensus 258 ~~dp~~~~~~~~~~~~~~~~~~~~~~~ 284 (310)
+.||..|+++|+.++++.+.......+
T Consensus 210 A~dPv~MA~Af~~AV~AGR~a~~AG~~ 236 (247)
T PF05690_consen 210 AKDPVAMARAFKLAVEAGRLAYLAGRM 236 (247)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999987765544443
No 39
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=99.59 E-value=1e-13 Score=125.18 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=146.0
Q ss_pred ccceeeecCCccccC------C------C-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcc
Q 037779 28 VGLAQMLRGGVIMDV------V------T-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP 94 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~------~------~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP 94 (310)
.+.+++|.+|..... . + .++|+.|.+.||++++.. |. |. . |.+.++++.+.+++|
T Consensus 11 ~Gk~VrL~qG~~~~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~lHvV-----DL----g~--~-n~~~i~~i~~~~~~~ 78 (253)
T TIGR02129 11 NGKVKQIVGGTLTSKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGCHVI-----ML----GP--N-NDDAAKEALHAYPGG 78 (253)
T ss_pred CCEEEEeeCcCccccccCCcceEEecCCCHHHHHHHHHHcCCCEEEEE-----EC----CC--C-cHHHHHHHHHhCCCC
Confidence 577889999887644 2 2 379999999999999765 33 22 2 689999999999999
Q ss_pred eEeeccccchHHHHHHHHcCCCeee-ecCCCC-----hhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779 95 VMAKARIGHFVEAQILEAIGVDYVD-ESEVLT-----PADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 95 v~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~-----~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g 167 (310)
+.+...+.. +.++.++++||+.|. .+...+ +..+.+..++.+.+ +.+.++++-. +.|--.+.++|
T Consensus 79 v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~-------~~g~~~V~~~G 150 (253)
T TIGR02129 79 LQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT-------QDGRWIVAMNK 150 (253)
T ss_pred EEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc-------CCCcEEEEECC
Confidence 999998876 889999999999987 332222 33444444444433 5555555300 01222566666
Q ss_pred CCC-CC-chH-HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779 168 EAG-TG-NIV-EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL 244 (310)
Q Consensus 168 ~~~-~~-~~~-~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~ 244 (310)
+.. ++ +.. +.++...+. .....++.+++|+++ .+++.++++.+.+..++|| ||+||+++.+|+.++.+.
T Consensus 151 W~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl-----~G~dlel~~~l~~~~~ipV--IASGGv~s~eDi~~l~~~ 222 (253)
T TIGR02129 151 WQTITDLELNAETLEELSKY-CDEFLIHAADVEGLC-----KGIDEELVSKLGEWSPIPI--TYAGGAKSIDDLDLVDEL 222 (253)
T ss_pred CcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcc-----ccCCHHHHHHHHhhCCCCE--EEECCCCCHHHHHHHHHh
Confidence 643 22 334 555666555 566677788888874 5778999999999889999 789999999999999665
Q ss_pred --CCCEEEEcccccc
Q 037779 245 --GCDGVFVGSGVFK 257 (310)
Q Consensus 245 --GadgV~VGsai~~ 257 (310)
|..++++|++|+.
T Consensus 223 ~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 223 SKGKVDLTIGSALDI 237 (253)
T ss_pred cCCCCcEEeeehHHH
Confidence 7888999999886
No 40
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.59 E-value=2.1e-13 Score=123.57 Aligned_cols=209 Identities=14% Similarity=0.039 Sum_probs=149.4
Q ss_pred ccceeeecCCcc---ccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779 28 VGLAQMLRGGVI---MDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH 103 (310)
Q Consensus 28 ~~~~~~l~~g~i---~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~ 103 (310)
.+.+++|.+|.. ....+| +.++.+.+.|+.+++.. ..|. .+ |. ..|.+.++++.+.+.+|+.+...+.+
T Consensus 13 ~G~vVrl~~G~~~~~~~y~~p~~~a~~~~~~g~~~lhiv---DLd~-a~-g~--~~n~~~i~~i~~~~~~~v~vgGGIrs 85 (243)
T TIGR01919 13 GGAAVRLQQGAGGSKTYYGSLESAAKWWEQGGAEWIHLV---DLDA-AF-GG--GNNEMMLEEVVKLLVVVEELSGGRRD 85 (243)
T ss_pred CCEEEEeecCCCCCceecCCHHHHHHHHHhCCCeEEEEE---ECCC-CC-CC--cchHHHHHHHHHHCCCCEEEcCCCCC
Confidence 567888888853 233466 78999999999987432 1122 12 22 45688999999999999999999988
Q ss_pred hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhC-CCEEEEecCCCCC-chHHHHH
Q 037779 104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFR-VPFVCGCRNLGESLRRIREG-AAMIRTKGEAGTG-NIVEAVR 179 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~G-ad~I~v~g~~~~~-~~~~~~~ 179 (310)
.+.++.+.++||+.|. .+...+.+++.+.+.+...+ +.+.++++. .| -..+.++|+..++ .+.+.++
T Consensus 86 ~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~---------~g~~~~v~~~Gw~~~~~~~~~~~~ 156 (243)
T TIGR01919 86 DSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLE---------DGEWHTLGNRGWSDGGGDLEVLER 156 (243)
T ss_pred HHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEec---------CCceEEEECCCeecCCCcHHHHHH
Confidence 8899999999999988 55544555555555443223 444444431 12 1245555664332 4556677
Q ss_pred HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH---HcCCCEEEEccccc
Q 037779 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM---QLGCDGVFVGSGVF 256 (310)
Q Consensus 180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~---~~GadgV~VGsai~ 256 (310)
...+++.....+..++.|++ ..+++.++++.+.+..++|| |++|||++.+|+.++. +.|++||++|++|+
T Consensus 157 ~~~~~g~~~ii~tdI~~dGt-----~~G~d~~l~~~l~~~~~~pv--iasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 157 LLDSGGCSRVVVTDSKKDGL-----SGGPNELLLEVVAARTDAIV--AASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLY 229 (243)
T ss_pred HHHhCCCCEEEEEecCCccc-----CCCcCHHHHHHHHhhCCCCE--EEECCcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence 77777777667777888876 34678999999988888999 7899999999999985 35999999999999
Q ss_pred cCC
Q 037779 257 KSG 259 (310)
Q Consensus 257 ~~~ 259 (310)
...
T Consensus 230 ~g~ 232 (243)
T TIGR01919 230 ARF 232 (243)
T ss_pred cCC
Confidence 876
No 41
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.59 E-value=3e-13 Score=122.48 Aligned_cols=184 Identities=20% Similarity=0.241 Sum_probs=129.1
Q ss_pred CH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ec
Q 037779 44 TP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ES 121 (310)
Q Consensus 44 ~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~ 121 (310)
++ ++++.+.+.|+++++.. |.. ..|.....+.+.++++++.+++|+++...+.+.+.++.+...|++.+. .+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~-----d~~-~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 28 DPVELAKRYNEQGADELVFL-----DIT-ASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEE-----cCC-cccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 54 89999999999998554 221 122223456889999999999999999999888888888889999987 33
Q ss_pred CCCChhHHHHHH-HhcCC-CCcEEeecC---------------------CHHHHHHHHHhCCCEEEEecCCCCCchHHHH
Q 037779 122 EVLTPADEENHI-NKHNF-RVPFVCGCR---------------------NLGESLRRIREGAAMIRTKGEAGTGNIVEAV 178 (310)
Q Consensus 122 ~~~~~~~~~~~~-~~~~~-~l~v~~~v~---------------------t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~ 178 (310)
..+..+++...+ +..+. .+.+.++++ +.+.++.+.+.|++++.+++....++
T Consensus 102 ~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~----- 176 (243)
T cd04731 102 AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT----- 176 (243)
T ss_pred hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC-----
Confidence 333333433334 33221 244444432 23344566678888888764321111
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~ 257 (310)
..+.++++++.+++..++|| +++|||.+++++.++++. |+|+|++|++|+.
T Consensus 177 --------------------------~~g~~~~~i~~i~~~~~~pv--ia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 177 --------------------------KKGYDLELIRAVSSAVNIPV--IASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred --------------------------CCCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 12346888888888778999 679999999999999986 9999999999999
Q ss_pred CCCHHHHHH
Q 037779 258 SGDPVRRAR 266 (310)
Q Consensus 258 ~~dp~~~~~ 266 (310)
.....+.++
T Consensus 229 ~~~~~~~~~ 237 (243)
T cd04731 229 GEYTIAELK 237 (243)
T ss_pred CCCCHHHHH
Confidence 877554433
No 42
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.58 E-value=9.6e-15 Score=131.25 Aligned_cols=207 Identities=26% Similarity=0.324 Sum_probs=141.4
Q ss_pred ccceeeecCCcc----ccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779 28 VGLAQMLRGGVI----MDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG 102 (310)
Q Consensus 28 ~~~~~~l~~g~i----~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~ 102 (310)
.+.+++|.+|.. .+..+| ++|+.|.+.|+++++.. +.|. .+.|. ..|.+.++++++.+.+|+.+...+.
T Consensus 10 ~G~~Vr~~~G~~~~~~~~~~dP~~~a~~~~~~g~~~l~iv---DLda-a~~g~--~~n~~~i~~i~~~~~~~i~vgGGIr 83 (229)
T PF00977_consen 10 NGRVVRLVKGDRFSETVYSGDPVEVAKAFNEQGADELHIV---DLDA-AKEGR--GSNLELIKEIAKETGIPIQVGGGIR 83 (229)
T ss_dssp TTEEEEESTTCCSCEECECCCHHHHHHHHHHTT-SEEEEE---EHHH-HCCTH--HHHHHHHHHHHHHSSSEEEEESSE-
T ss_pred CCEEEECCCeecceeeEECcCHHHHHHHHHHcCCCEEEEE---EccC-cccCc--hhHHHHHHHHHhcCCccEEEeCccC
Confidence 466777777776 334555 89999999999998554 1121 22222 3457889999999999999999998
Q ss_pred chHHHHHHHHcCCCeee-ecCCC-ChhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCC--CchHHH
Q 037779 103 HFVEAQILEAIGVDYVD-ESEVL-TPADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGT--GNIVEA 177 (310)
Q Consensus 103 ~~~~~~~~~~aGad~v~-~~~~~-~~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~--~~~~~~ 177 (310)
..+.++.+.++||+.|+ .+..+ +|..+.+.....+. .+.+.++++. | -.+.++|+... -+..+.
T Consensus 84 s~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~----------g-~~v~~~gw~~~~~~~~~~~ 152 (229)
T PF00977_consen 84 SIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARD----------G-YKVATNGWQESSGIDLEEF 152 (229)
T ss_dssp SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEE----------T-EEEEETTTTEEEEEEHHHH
T ss_pred cHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeee----------c-eEEEecCccccCCcCHHHH
Confidence 88899999999999977 44333 34444443433333 2555555543 2 23445555321 245677
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++...+++.....+.+++.|++ ..+++.++++.+.+..++|+ |++|||++.+|+.++.+.|++||++|++|+.
T Consensus 153 ~~~~~~~g~~~ii~tdi~~dGt-----~~G~d~~~~~~l~~~~~~~v--iasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 153 AKRLEELGAGEIILTDIDRDGT-----MQGPDLELLKQLAEAVNIPV--IASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHHHHTT-SEEEEEETTTTTT-----SSS--HHHHHHHHHHHSSEE--EEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred HHHHHhcCCcEEEEeeccccCC-----cCCCCHHHHHHHHHHcCCCE--EEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 7777777777667777777765 35678999999987778999 7899999999999999999999999999987
Q ss_pred C
Q 037779 258 S 258 (310)
Q Consensus 258 ~ 258 (310)
.
T Consensus 226 g 226 (229)
T PF00977_consen 226 G 226 (229)
T ss_dssp T
T ss_pred C
Confidence 4
No 43
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.58 E-value=1.7e-13 Score=123.21 Aligned_cols=204 Identities=18% Similarity=0.168 Sum_probs=141.9
Q ss_pred ccceeeecCCccc---cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779 28 VGLAQMLRGGVIM---DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH 103 (310)
Q Consensus 28 ~~~~~~l~~g~i~---~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~ 103 (310)
.+.++++.+|... ...+| ++|+.|.+.|+++++.. +.|. .+ | ...+.+.++++.+....|+.+...+.+
T Consensus 12 ~G~~Vr~~~G~~~~~~~~~dP~~~a~~~~~~ga~~lhiv---DLd~-a~-~--~~~n~~~i~~i~~~~~~~v~vGGGIrs 84 (232)
T PRK13586 12 LGKAVKRIRGVKGTGLILGNPIEIASKLYNEGYTRIHVV---DLDA-AE-G--VGNNEMYIKEISKIGFDWIQVGGGIRD 84 (232)
T ss_pred CCEEEEeeecCCCCceEcCCHHHHHHHHHHCCCCEEEEE---ECCC-cC-C--CcchHHHHHHHHhhCCCCEEEeCCcCC
Confidence 4667777777532 12465 89999999999998554 1121 12 2 234678899998854459999999988
Q ss_pred hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCC-CcEEeec-CCHHHHHHHHHhCCCEEEEecCCCCC-chHHHH
Q 037779 104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFR-VPFVCGC-RNLGESLRRIREGAAMIRTKGEAGTG-NIVEAV 178 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~-l~v~~~v-~t~~ea~~a~~~Gad~I~v~g~~~~~-~~~~~~ 178 (310)
.++++.+.+.||+.|. .+.....+++.+.+.+ .+.. +.+.+++ ++ | .+.+.|+..++ .+.+.+
T Consensus 85 ~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~----------~--~v~~~gw~~~~~~~~e~~ 152 (232)
T PRK13586 85 IEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNT----------K--RVLIRGWKEKSMEVIDGI 152 (232)
T ss_pred HHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCC----------C--EEEccCCeeCCCCHHHHH
Confidence 8899999999999987 5544444455555444 3332 3444454 22 2 55665553222 445666
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+...+++.....+..++.|++ ..+.+.++++.+.+. ..|+ +++|||++.+|+.++.++|++|++||++++..
T Consensus 153 ~~l~~~g~~~ii~tdI~~dGt-----~~G~d~el~~~~~~~-~~~v--iasGGv~s~~Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 153 KKVNELELLGIIFTYISNEGT-----TKGIDYNVKDYARLI-RGLK--EYAGGVSSDADLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred HHHHhcCCCEEEEeccccccc-----CcCcCHHHHHHHHhC-CCCE--EEECCCCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence 666666666667777777776 356789999988775 4465 67999999999999999999999999999964
No 44
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.58 E-value=6.8e-14 Score=124.76 Aligned_cols=151 Identities=25% Similarity=0.373 Sum_probs=118.2
Q ss_pred hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCCC--CCchHHHHHHHHHhhcc-eecccccC
Q 037779 127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEAG--TGNIVEAVRHVRSVMGD-IRVLRNMD 195 (310)
Q Consensus 127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~ 195 (310)
..+.+.+...++. ++...+|+|.+|+.+..+ .+-++|++. +..+ -+++.+++++++++.++ |.++++..
T Consensus 52 ~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~ 131 (250)
T PRK00208 52 DNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT 131 (250)
T ss_pred chHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4556666554455 788889999999987664 366888864 4332 35678999999999876 88998888
Q ss_pred chhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 196 DDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 196 ~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
+|+.... ..++. ..++++.+.+..++|| |++|||++++|+.+++++|||||+|||+|+
T Consensus 132 ~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~-~~~~i~~i~e~~~vpV--IveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 132 DDPVLAKRLEEAGCAAVMPLGAPIGSGLGLL-NPYNLRIIIEQADVPV--IVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred CCHHHHHHHHHcCCCEeCCCCcCCCCCCCCC-CHHHHHHHHHhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 7777431 01111 4677888887667899 679999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCChhh
Q 037779 257 KSGDPVRRARAIVQAVTNYSDPDV 280 (310)
Q Consensus 257 ~~~dp~~~~~~~~~~~~~~~~~~~ 280 (310)
+++||..+++.|..++++.+....
T Consensus 209 ka~dP~~ma~af~~Av~aGr~a~~ 232 (250)
T PRK00208 209 VAGDPVAMARAFKLAVEAGRLAYL 232 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997665433
No 45
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.58 E-value=4.7e-13 Score=122.40 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=130.4
Q ss_pred ceeeecCCcccc-CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHH
Q 037779 30 LAQMLRGGVIMD-VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA 107 (310)
Q Consensus 30 ~~~~l~~g~i~~-~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~ 107 (310)
.+++++++.-.. ..+| ++|+.|.+.|+++++.. |...- |.....|.+.++++++.+++|+++...+.+.+++
T Consensus 16 ~~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~-----Dl~~~-~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~ 89 (258)
T PRK01033 16 GLVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVL-----DIDAS-KRGSEPNYELIENLASECFMPLCYGGGIKTLEQA 89 (258)
T ss_pred cEEEeecccCceeCCCHHHHHHHHHHcCCCEEEEE-----ECCCC-cCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHH
Confidence 344444433111 3455 88999999999998543 44222 1223567999999999999999999888877888
Q ss_pred HHHHHcCCCeee-ecCCCChhHHHHHHHh-cCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCC--CCchHHHHHHHH
Q 037779 108 QILEAIGVDYVD-ESEVLTPADEENHINK-HNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAG--TGNIVEAVRHVR 182 (310)
Q Consensus 108 ~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~--~~~~~~~~~~~~ 182 (310)
+.+.++|++.+. .+..+..+++.+.+.+ .+. .+.+.++++.- ..|.-.+.++|+.. .....+..+.+.
T Consensus 90 ~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g-------~~~~~~v~~~gw~~~~~~~~~e~~~~~~ 162 (258)
T PRK01033 90 KKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKN-------LGGKFDVYTHNGTKKLKKDPLELAKEYE 162 (258)
T ss_pred HHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecC-------CCCcEEEEEcCCeecCCCCHHHHHHHHH
Confidence 888899999987 4444443444444433 221 14444443221 00000112222210 111223333333
Q ss_pred HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCC
Q 037779 183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~d 260 (310)
+.+.+...+..++.++. ..+.++++++.+.+..++|| |++|||.+++|+.+++ +.|++||++|++|+..++
T Consensus 163 ~~g~~~ii~~~i~~~G~-----~~G~d~~~i~~~~~~~~ipv--IasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~ 234 (258)
T PRK01033 163 ALGAGEILLNSIDRDGT-----MKGYDLELLKSFRNALKIPL--IALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGV 234 (258)
T ss_pred HcCCCEEEEEccCCCCC-----cCCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCcc
Confidence 33333233333333332 13458999999998888999 7899999999999999 799999999999999844
No 46
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.57 E-value=4.5e-13 Score=122.09 Aligned_cols=187 Identities=19% Similarity=0.204 Sum_probs=126.3
Q ss_pred CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-
Q 037779 42 VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD- 119 (310)
Q Consensus 42 ~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~- 119 (310)
..+| +.++.+.+.|+++++.. |... .+.....+.+.++++++.+++|+++...+.+.+.++.+...|++.+.
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~-----dl~~-~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFL-----DITA-SSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEE-----eCCc-ccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3454 89999999999998554 2211 11112456889999999999999999999888888888889999987
Q ss_pred ecCCCChhHHHHHHHh-cCCC-CcEEeecCC----------------------HHHHHHHHHhCCCEEEEecCCCCCchH
Q 037779 120 ESEVLTPADEENHINK-HNFR-VPFVCGCRN----------------------LGESLRRIREGAAMIRTKGEAGTGNIV 175 (310)
Q Consensus 120 ~~~~~~~~~~~~~~~~-~~~~-l~v~~~v~t----------------------~~ea~~a~~~Gad~I~v~g~~~~~~~~ 175 (310)
.+..+..+++.+.+.+ .+.+ +.+.+++++ .+.+..+.+.|++.+.++..
T Consensus 103 gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i------- 175 (253)
T PRK02083 103 NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM------- 175 (253)
T ss_pred ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCC-------
Confidence 3333333344444444 2212 344444321 12234445566666555421
Q ss_pred HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccc
Q 037779 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSG 254 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsa 254 (310)
+.++. ..+.++++++.+.+..++|| |++|||.+++|+.++++ .|+++|++|++
T Consensus 176 -------------------~~~g~-----~~g~d~~~i~~~~~~~~ipv--ia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 176 -------------------DRDGT-----KNGYDLELTRAVSDAVNVPV--IASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred -------------------cCCCC-----CCCcCHHHHHHHHhhCCCCE--EEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 11111 12447888899988778999 77999999999999997 59999999999
Q ss_pred cccCCCHHHHHHH
Q 037779 255 VFKSGDPVRRARA 267 (310)
Q Consensus 255 i~~~~dp~~~~~~ 267 (310)
|+....+...+++
T Consensus 230 l~~~~~~~~~~~~ 242 (253)
T PRK02083 230 FHFGEITIGELKA 242 (253)
T ss_pred HHcCCCCHHHHHH
Confidence 9987765544433
No 47
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.57 E-value=7.1e-14 Score=124.49 Aligned_cols=152 Identities=26% Similarity=0.387 Sum_probs=118.3
Q ss_pred hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCCC--CCchHHHHHHHHHhhcc-eecccccC
Q 037779 127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEAG--TGNIVEAVRHVRSVMGD-IRVLRNMD 195 (310)
Q Consensus 127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~ 195 (310)
..+.+.+...++. ++...+|+|.+|+.+..+ .|-++|++. +..+ -+.+.+++++++++.++ |.++++..
T Consensus 52 ~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~ 131 (248)
T cd04728 52 ESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCT 131 (248)
T ss_pred chHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4455556544444 788889999999987664 366888864 4322 35678999999999776 88998888
Q ss_pred chhHHhh-----------------hccCCC-cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 196 DDEVFTF-----------------AKNIAA-PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 196 ~d~~~~~-----------------~~~~~~-~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+|+.... ..+.+. +.++++.+.+..++|| |++|||++++|+.+++++|||||+|||+|++
T Consensus 132 dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpV--I~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 132 DDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPV--IVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcE--EEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 7777431 001111 4778888888777899 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCChhh
Q 037779 258 SGDPVRRARAIVQAVTNYSDPDV 280 (310)
Q Consensus 258 ~~dp~~~~~~~~~~~~~~~~~~~ 280 (310)
+.||..+++.|..++++.+....
T Consensus 210 a~dP~~ma~af~~Av~aGr~a~~ 232 (248)
T cd04728 210 AKDPVAMARAFKLAVEAGRLAYL 232 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997665443
No 48
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.56 E-value=3.2e-13 Score=118.95 Aligned_cols=179 Identities=15% Similarity=0.212 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYVDES-E 122 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~ 122 (310)
+.++ ..++|+++| ++| .+..+. ......++++.+.. ..+++++++ ++.+...|+|++|.. .
T Consensus 19 ~~~~-~~~~g~~~i-qlR-------~k~~~~-~~~~~~~~~l~~~~~~~~~liin~~------~~la~~~~~~gvHl~~~ 82 (201)
T PRK07695 19 AVAM-QIHSEVDYI-HIR-------EREKSA-KELYEGVESLLKKGVPASKLIINDR------VDIALLLNIHRVQLGYR 82 (201)
T ss_pred HHHH-HHhCCCCEE-EEc-------CCCCCH-HHHHHHHHHHHHhCCCCCeEEEECH------HHHHHHcCCCEEEeCcc
Confidence 3444 678899998 553 221110 00023344444331 234666644 457788999999843 2
Q ss_pred CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779 123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 202 (310)
.....++ ++..++..+.++++|.+++.++.+.|+||+.. |+.+... ...+
T Consensus 83 ~~~~~~~----r~~~~~~~ig~s~~s~e~a~~a~~~Gadyi~~-g~v~~t~---------------------~k~~---- 132 (201)
T PRK07695 83 SFSVRSV----REKFPYLHVGYSVHSLEEAIQAEKNGADYVVY-GHVFPTD---------------------CKKG---- 132 (201)
T ss_pred cCCHHHH----HHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEE-CCCCCCC---------------------CCCC----
Confidence 2233333 22224678899999999999999999999975 3332211 1000
Q ss_pred hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779 203 AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275 (310)
Q Consensus 203 ~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~ 275 (310)
.....++.++.+.+..++|| ++.||| +++++.++++.|+++|.+||+|+.++||.+.++.+.+.+++|
T Consensus 133 --~~~~g~~~l~~~~~~~~ipv--ia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~ 200 (201)
T PRK07695 133 --VPARGLEELSDIARALSIPV--IAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW 200 (201)
T ss_pred --CCCCCHHHHHHHHHhCCCCE--EEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence 01124667777776667999 567999 799999999999999999999999999999999999988776
No 49
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=99.56 E-value=1.1e-13 Score=123.15 Aligned_cols=155 Identities=17% Similarity=0.306 Sum_probs=121.2
Q ss_pred hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH----h-------CCCEEEEe--cCC--CCCchHHHHHHHHHhhcc-ee
Q 037779 127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR----E-------GAAMIRTK--GEA--GTGNIVEAVRHVRSVMGD-IR 189 (310)
Q Consensus 127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~----~-------Gad~I~v~--g~~--~~~~~~~~~~~~~~~~~~-~~ 189 (310)
..+.+.+...+.. ++...+|+|.+|+.+..+ + +-++|++. +.. .-++..+++++++++.++ |.
T Consensus 60 ~~~l~~i~~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 60 SNLLNGLDWNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred chHHHhhchhccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 4555666544444 788889999999987653 3 35788754 432 335778999999999997 99
Q ss_pred cccccCchhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Q 037779 190 VLRNMDDDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 190 ~l~~~~~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~ 250 (310)
+++|+++|+++.. .+++. +...++.+.+..++|| +..+||++++|+.+++++|+|||+
T Consensus 140 VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~-n~~~l~~i~e~~~vpV--ivdAGIgt~sDa~~AmElGaDgVL 216 (267)
T CHL00162 140 VLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQ-NLLNLQIIIENAKIPV--IIDAGIGTPSEASQAMELGASGVL 216 (267)
T ss_pred EeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCC-CHHHHHHHHHcCCCcE--EEeCCcCCHHHHHHHHHcCCCEEe
Confidence 9999999999652 12222 4556677777778999 568999999999999999999999
Q ss_pred EccccccCCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779 251 VGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV 284 (310)
Q Consensus 251 VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~ 284 (310)
+.|+|.+++||.++++.|+.++++.+.......+
T Consensus 217 ~nSaIakA~dP~~mA~a~~~AV~AGR~A~~AG~~ 250 (267)
T CHL00162 217 LNTAVAQAKNPEQMAKAMKLAVQAGRLAYLAGRM 250 (267)
T ss_pred ecceeecCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999987765444333
No 50
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.55 E-value=2.6e-13 Score=118.75 Aligned_cols=179 Identities=21% Similarity=0.268 Sum_probs=118.8
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
.+.++.+.++|++++ +++-...+...+ ......+..+++..+.|+++++. ++.+.+.|+++|+.. ..
T Consensus 16 ~~~~~~~~~~g~~~v-~lR~~~~~~~~~-----~~~~~~l~~~~~~~~~~l~i~~~------~~la~~~g~~GvHl~~~~ 83 (196)
T TIGR00693 16 LNRVEAALKGGVTLV-QLRDKGSNTRER-----LALAEKLQELCRRYGVPFIVNDR------VDLALALGADGVHLGQDD 83 (196)
T ss_pred HHHHHHHHhcCCCEE-EEecCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEECH------HHHHHHcCCCEEecCccc
Confidence 367888889999988 553100011110 01123344555556899988754 456788999999853 22
Q ss_pred CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+........ .+.+..+.+++||.+|+.++.+.|+||+.+. +.+.. .++..
T Consensus 84 ~~~~~~r~~---~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~-~v~~t---------------------~~k~~----- 133 (196)
T TIGR00693 84 LPASEARAL---LGPDKIIGVSTHNLEELAEAEAEGADYIGFG-PIFPT---------------------PTKKD----- 133 (196)
T ss_pred CCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhHcCCCEEEEC-CccCC---------------------CCCCC-----
Confidence 333232222 2345789999999999999999999999874 33321 11000
Q ss_pred ccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779 204 KNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~ 268 (310)
.......+.++.+.+. .++|| ++.||| +++++.+++++|+++|.+||+|++++||.+.++++
T Consensus 134 ~~~~~g~~~l~~~~~~~~~~pv--~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 134 PAPPAGVELLREIAATSIDIPI--VAIGGI-TLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCCCCHHHHHHHHHhcCCCCE--EEECCc-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 0011246667777654 35898 567999 69999999999999999999999999999887753
No 51
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.54 E-value=7.2e-13 Score=124.01 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=133.7
Q ss_pred CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc--c-hHHHHHHHHc
Q 037779 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--H-FVEAQILEAI 113 (310)
Q Consensus 37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--~-~~~~~~~~~a 113 (310)
+.|....+++++.+..++|.-++.-....+.+ . ..+.|+++++.++.|+-++.+.. . .+.++.+.+.
T Consensus 17 apM~~~s~~~la~avs~aGglG~l~~~~~~~~--~--------l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~ 86 (307)
T TIGR03151 17 GGMAWVATGSLAAAVSNAGGLGIIGAGNAPPD--V--------VRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEE 86 (307)
T ss_pred CCCCCCCCHHHHHHHHhCCCcceeccccCCHH--H--------HHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhC
Confidence 55556778999999999999876221100000 0 12457788887888988876542 2 2345678889
Q ss_pred CCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779 114 GVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 114 Gad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
|++.|..+.. .|.++++.++.+ ++.+++.+.+.++++++.+.|+|+|.++|...+++.
T Consensus 87 ~v~~v~~~~g-~p~~~i~~lk~~--g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~------------------- 144 (307)
T TIGR03151 87 KVPVVTTGAG-NPGKYIPRLKEN--GVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHI------------------- 144 (307)
T ss_pred CCCEEEEcCC-CcHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCC-------------------
Confidence 9999875433 455677888764 688889999999999999999999999877444431
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
....++.+++++.+..++|| |++|||.+++++.+++.+||+||++||.|..+..
T Consensus 145 -----------g~~~~~~ll~~v~~~~~iPv--iaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 145 -----------GELTTMALVPQVVDAVSIPV--IAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred -----------CCCcHHHHHHHHHHHhCCCE--EEECCCCCHHHHHHHHHcCCCEeecchHHhcccc
Confidence 11235788888888778999 6799999999999999999999999999998653
No 52
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.52 E-value=1.5e-12 Score=116.95 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=123.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCC---CCCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCee--e
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVA---RMSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYV--D 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~---~~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v--~ 119 (310)
+.++.+.++|++++| ++ ...|+. ..-.++.++++++.++.|+-+...+.+ .+.++.+.++|||+| |
T Consensus 24 ~~l~~~~~~g~~~ih-ld-------~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH 95 (229)
T PLN02334 24 EEAKRVLDAGADWLH-VD-------VMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFH 95 (229)
T ss_pred HHHHHHHHcCCCEEE-Ee-------cccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEe
Confidence 678999999999994 42 111211 111247889999888877766666632 245678889999999 4
Q ss_pred ec--CCCChhHHHHHHHhcCCCCcEEeecC--CHHHHHHHHHhC--CCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779 120 ES--EVLTPADEENHINKHNFRVPFVCGCR--NLGESLRRIREG--AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 120 ~~--~~~~~~~~~~~~~~~~~~l~v~~~v~--t~~ea~~a~~~G--ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
.. ..-.+....+.++. .++.+++.++ |+.+..+....+ +|++.+. +.+.+.
T Consensus 96 ~~q~~~d~~~~~~~~i~~--~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~-~v~pg~-------------------- 152 (229)
T PLN02334 96 IEQASTIHLHRLIQQIKS--AGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVM-SVEPGF-------------------- 152 (229)
T ss_pred eccccchhHHHHHHHHHH--CCCeEEEEECCCCCHHHHHHHHhccCCCEEEEE-EEecCC--------------------
Confidence 22 11234455555544 4566666665 666655555444 9999764 211111
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~ 272 (310)
+.. .-.....+.++.+++. .++|++ +.||| +++++.++.++|+|++++||+|++++||.+.+++|++.+
T Consensus 153 -~~~------~~~~~~~~~i~~~~~~~~~~~I~--a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~ 222 (229)
T PLN02334 153 -GGQ------SFIPSMMDKVRALRKKYPELDIE--VDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASV 222 (229)
T ss_pred -Ccc------ccCHHHHHHHHHHHHhCCCCcEE--EeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 000 0001124455556554 357884 46999 699999999999999999999999999999999998876
Q ss_pred Hc
Q 037779 273 TN 274 (310)
Q Consensus 273 ~~ 274 (310)
++
T Consensus 223 ~~ 224 (229)
T PLN02334 223 EK 224 (229)
T ss_pred HH
Confidence 64
No 53
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.51 E-value=2.1e-12 Score=115.27 Aligned_cols=187 Identities=17% Similarity=0.175 Sum_probs=132.8
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccchH-HHHHHHHcCCCeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHFV-EAQILEAIGVDYVD 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~~-~~~~~~~aGad~v~ 119 (310)
+.++.+.++|+++++ +.+++|. . .|+ +..++.+|+. +++|+-++-.+.+.+ .++.+.++|||.+.
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn-~-tfg-------~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~ 86 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPN-L-TFG-------APICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMIT 86 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCc-c-ccC-------HHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 678999999999973 2335553 2 344 8899999988 699998888886543 45788889999987
Q ss_pred ec-C-CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccC
Q 037779 120 ES-E-VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 ~~-~-~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (310)
.+ + ...+.+.++.+++.+....+.+...|+-+.....-.-.|.|.+. .+++++- +.
T Consensus 87 ~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq------------------~f-- 146 (220)
T PRK08883 87 FHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ------------------SF-- 146 (220)
T ss_pred EcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc------------------ee--
Confidence 54 2 23456777888887766777777778777666555567766443 2333331 00
Q ss_pred chhHHhhhccCCCcHHHHHHHHhc-----CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 196 DDEVFTFAKNIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~l~~~i~~~-----~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
+....+.++++++. .++|+. +.|||+ ++++.++.++|||++++||+|++++|+.+.++++++
T Consensus 147 ----------i~~~lekI~~l~~~~~~~~~~~~I~--vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 147 ----------IPHTLDKLRAVRKMIDESGRDIRLE--IDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred ----------cHhHHHHHHHHHHHHHhcCCCeeEE--EECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 01123334444332 146774 469995 999999999999999999999999999999999988
Q ss_pred HHHc
Q 037779 271 AVTN 274 (310)
Q Consensus 271 ~~~~ 274 (310)
.+++
T Consensus 214 ~~~~ 217 (220)
T PRK08883 214 ELAK 217 (220)
T ss_pred HHHh
Confidence 7754
No 54
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.51 E-value=2.6e-12 Score=117.26 Aligned_cols=204 Identities=18% Similarity=0.198 Sum_probs=128.6
Q ss_pred CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-e
Q 037779 43 VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-E 120 (310)
Q Consensus 43 ~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~ 120 (310)
.+| ++|+.|.+.|+++++..+ ...- +.....+.+.++++++.+++||++...+.+.+.++.+..+||+.+. .
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~D-----l~~~-~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLD-----ITAS-SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEc-----CCcc-cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 355 899999999999986542 2111 1122356888999999999999999999888889999999999987 4
Q ss_pred cCCCChhHHHHHHHhcCC--CCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-C-CchHHHHHHHHHhhcceecccccCc
Q 037779 121 SEVLTPADEENHINKHNF--RVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-T-GNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~--~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
+..+..+++.+.+.+... .+.+.++++..+.. ..+.--+.+.++.. + ....+..+...+.+.+...+..++.
T Consensus 104 t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~----~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~ 179 (254)
T TIGR00735 104 TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVN----SYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDK 179 (254)
T ss_pred hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCC----CCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCc
Confidence 444444455555544322 24444454321000 00000123333211 1 1122333333333334333333333
Q ss_pred hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHH
Q 037779 197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVR 263 (310)
Q Consensus 197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~ 263 (310)
++. ..+.++++++.+++..++|| |++|||.+++++.++++.| +++|++|++|+.......
T Consensus 180 ~g~-----~~g~~~~~~~~i~~~~~ipv--ia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 180 DGT-----KSGYDLELTKAVSEAVKIPV--IASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIG 240 (254)
T ss_pred ccC-----CCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence 322 23457889999988888999 6799999999999999987 999999999998765443
No 55
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.50 E-value=1.3e-12 Score=130.09 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=151.6
Q ss_pred ccccCCCH-HHHHHHHHcCCcEEEecccccchhhhc-CCC-CCCCChHHHHHHHhhcCcceEeeccccch----------
Q 037779 38 VIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQ-GGV-ARMSDPQLIKQIKSSVTIPVMAKARIGHF---------- 104 (310)
Q Consensus 38 ~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~-~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~---------- 104 (310)
.+++..|| ++|+.|.+.||++++.+ |+..+ .|. .+..+.+.++++.+.+.+|+.+...+.+.
T Consensus 262 ~~~~~gdPve~a~~y~~~Gadel~~~-----Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~ 336 (538)
T PLN02617 262 EVRNLGKPVELAGQYYKDGADEVAFL-----NITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSS 336 (538)
T ss_pred CCCcCCCHHHHHHHHHHcCCCEEEEE-----ECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccch
Confidence 45667776 89999999999999766 44432 111 12334788999999999999999888754
Q ss_pred -HHHHHHHHcCCCeee-ecCC-CCh-----------hHHHHHHHhcCCCCcEEe--ecCCHH--H-------HHHHHH--
Q 037779 105 -VEAQILEAIGVDYVD-ESEV-LTP-----------ADEENHINKHNFRVPFVC--GCRNLG--E-------SLRRIR-- 157 (310)
Q Consensus 105 -~~~~~~~~aGad~v~-~~~~-~~~-----------~~~~~~~~~~~~~l~v~~--~v~t~~--e-------a~~a~~-- 157 (310)
+.++.++.+|||.|. .+.. ..| +++++.+.+......+++ +++... + ..++..
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccC
Confidence 568999999999998 3322 222 466666665332344444 443210 0 000000
Q ss_pred -hCC----CEEEEecCCC-CC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC
Q 037779 158 -EGA----AMIRTKGEAG-TG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 158 -~Ga----d~I~v~g~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G 230 (310)
.|- =.+.++|+.. ++ ...+..+.+.+++.....++.+++|++ ..+.+.++++.+.+..++|| ||+|
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt-----~~G~d~~l~~~v~~~~~ipv--iasG 489 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQ-----GKGFDIELVKLVSDAVTIPV--IASS 489 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccc-----ccCcCHHHHHHHHhhCCCCE--EEEC
Confidence 010 0155555532 22 334555666667777888888888876 35778999999998889999 7899
Q ss_pred CCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 231 GVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 231 GI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
|+++++|+.++++ .|+++++.+|.|...+.+...++++..
T Consensus 490 G~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 490 GAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 9999999999997 689999999999998877666655543
No 56
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.50 E-value=9e-13 Score=131.31 Aligned_cols=183 Identities=22% Similarity=0.283 Sum_probs=127.7
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
+.++.+.++|+.+| +||....+.+.+ ......+.++++..+++++++++ ++.+.+.|+|+||.. ..+
T Consensus 311 ~~l~~~l~~Gv~~v-qlR~k~~~~~~~-----~~~a~~l~~~~~~~~~~liind~------~~lA~~~~adGvHl~~~d~ 378 (502)
T PLN02898 311 DAVRAAIEGGATIV-QLREKEAETREF-----IEEAKACLAICRSYGVPLLINDR------VDVALACDADGVHLGQSDM 378 (502)
T ss_pred HHHHHHHHcCCCEE-EEccCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEcCh------HHHHHhcCCCEEEeChHhc
Confidence 57889999999998 563111111111 11123344455556789888865 346778999999943 333
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
+..+..+. .+.+..+.+++||.+|+.++.+.|+||+.+. +.+... ++..
T Consensus 379 ~~~~~r~~---~~~~~~iG~S~h~~~e~~~a~~~gadyi~~g-pif~t~---------------------tk~~------ 427 (502)
T PLN02898 379 PVRLARSL---LGPGKIIGVSCKTPEQAEQAWKDGADYIGCG-GVFPTN---------------------TKAN------ 427 (502)
T ss_pred CHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEEC-CeecCC---------------------CCCC------
Confidence 33333221 3456789999999999999999999999974 433221 1100
Q ss_pred cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC---EEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD---GVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad---gV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
.....++.++++.+..++||++ -||| +++++.+++++|++ +|.++|+|++++||.+.++.+.+.+..
T Consensus 428 ~~~~g~~~~~~~~~~~~~Pv~a--iGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~ 497 (502)
T PLN02898 428 NKTIGLDGLREVCEASKLPVVA--IGGI-SASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTE 497 (502)
T ss_pred CCCCCHHHHHHHHHcCCCCEEE--ECCC-CHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHH
Confidence 0122467777777767899955 5999 59999999999999 999999999999999999999988764
No 57
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.49 E-value=4.8e-12 Score=113.77 Aligned_cols=175 Identities=22% Similarity=0.257 Sum_probs=120.3
Q ss_pred CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-e
Q 037779 43 VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-E 120 (310)
Q Consensus 43 ~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~ 120 (310)
.+| ++++.|.+.|++.++.. |... .|.....+.+.++++++.+++|+++...+...+.++.+.+.|++.+. .
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~-----dl~~-~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVL-----DIDA-SKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEE-----eCCC-cccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 354 89999999999998543 3321 22222456889999999999999999888877788888889999987 4
Q ss_pred cCCCChhHHHHHHHh-cCCC-CcEEeecCC----------------------HHHHHHHHHhCCCEEEEecCCCCCchHH
Q 037779 121 SEVLTPADEENHINK-HNFR-VPFVCGCRN----------------------LGESLRRIREGAAMIRTKGEAGTGNIVE 176 (310)
Q Consensus 121 ~~~~~~~~~~~~~~~-~~~~-l~v~~~v~t----------------------~~ea~~a~~~Gad~I~v~g~~~~~~~~~ 176 (310)
+..+..+++.+.+.+ .+.. +.+.++++. .+.++.+.+.|++.+.+++.
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i-------- 175 (232)
T TIGR03572 104 TAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSI-------- 175 (232)
T ss_pred hhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCC--------
Confidence 444444455555544 2222 333334322 22334445566666666532
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH-HHHcCCCEEEEcccc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM-MMQLGCDGVFVGSGV 255 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~-~~~~GadgV~VGsai 255 (310)
+.++. ..+.++++++.+++..++|| +++|||++++++.+ +.+.|+++|++||+|
T Consensus 176 ------------------~~~g~-----~~g~~~~~~~~i~~~~~ipv--ia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 176 ------------------DRDGT-----MKGYDLELIKTVSDAVSIPV--IALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred ------------------CccCC-----cCCCCHHHHHHHHhhCCCCE--EEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 11111 12446889999988778999 67999999999999 667999999999998
Q ss_pred c
Q 037779 256 F 256 (310)
Q Consensus 256 ~ 256 (310)
.
T Consensus 231 h 231 (232)
T TIGR03572 231 H 231 (232)
T ss_pred h
Confidence 5
No 58
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.49 E-value=5.2e-12 Score=110.11 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLT 125 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~~ 125 (310)
+.++.+.++|++++ ++ |.+.- ...+.++.+++....-......+-..++++.+.++|||+++.+.. .
T Consensus 28 ~~~~~~~~~Gv~~v-ql-------r~k~~----~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~-~ 94 (187)
T PRK07455 28 QMAEAVAAGGMRLI-EI-------TWNSD----QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV-D 94 (187)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCCC----CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC-C
Confidence 67999999999998 44 32221 114556666655432211111122237889999999999985433 2
Q ss_pred hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779 126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205 (310)
Q Consensus 126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+..... ++..+.+++|+.|+.++.+.|+||++++. +..
T Consensus 95 -~~~~~~~~~~--~~~~i~G~~t~~e~~~A~~~Gadyv~~Fp---t~~-------------------------------- 136 (187)
T PRK07455 95 -PELIEAAVAQ--DIPIIPGALTPTEIVTAWQAGASCVKVFP---VQA-------------------------------- 136 (187)
T ss_pred -HHHHHHHHHc--CCCEEcCcCCHHHHHHHHHCCCCEEEECc---CCc--------------------------------
Confidence 3334444333 34566679999999999999999999851 110
Q ss_pred CCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
....+.++.++... ++|+++ -||| |++++..++++|+++|.+||+|+..
T Consensus 137 -~~G~~~l~~~~~~~~~ipvva--iGGI-~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 137 -VGGADYIKSLQGPLGHIPLIP--TGGV-TLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred -ccCHHHHHHHHhhCCCCcEEE--eCCC-CHHHHHHHHHCCCeEEEEehhcccC
Confidence 11245566666654 589954 5999 6999999999999999999999874
No 59
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.49 E-value=3.6e-12 Score=114.48 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=139.0
Q ss_pred ccceeeecCCccccC---CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779 28 VGLAQMLRGGVIMDV---VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH 103 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~---~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~ 103 (310)
.+.++++.+|+.... .+| ++++.|.+. +++++.. +.|. ...|. ..|.+.++++++.+++|+++...+.+
T Consensus 12 ~G~vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~iv---Dldg-a~~g~--~~n~~~i~~i~~~~~~pv~~gGGIrs 84 (228)
T PRK04128 12 NGKAVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVV---DLDG-AFEGK--PKNLDVVKNIIRETGLKVQVGGGLRT 84 (228)
T ss_pred CCEEEEEEeccccCceECCCHHHHHHHHHHh-CCEEEEE---ECcc-hhcCC--cchHHHHHHHHhhCCCCEEEcCCCCC
Confidence 445566666665432 255 789999998 9988554 2222 22222 35688999999999999999999988
Q ss_pred hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCC--CCCchHHHHHH
Q 037779 104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEA--GTGNIVEAVRH 180 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~--~~~~~~~~~~~ 180 (310)
.++++.+.++|++.++ .+...+| ++.+.+.+...++.+.++++. | -+.+.|+. ......+.+++
T Consensus 85 ~edv~~l~~~G~~~vivGtaa~~~-~~l~~~~~~~g~ivvslD~~~----------g--~v~~~gw~~~~~~~~~~~~~~ 151 (228)
T PRK04128 85 YESIKDAYEIGVENVIIGTKAFDL-EFLEKVTSEFEGITVSLDVKG----------G--RIAVKGWLEESSIKVEDAYEM 151 (228)
T ss_pred HHHHHHHHHCCCCEEEECchhcCH-HHHHHHHHHcCCEEEEEEccC----------C--eEecCCCeEcCCCCHHHHHHH
Confidence 8899999999999977 5555544 455555443333444445432 2 33444442 12244577788
Q ss_pred HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
..++ .....+..+++|++. .+.+ ++.+.+ .++|| |++|||++++|+.++.+.|++|+++|++|+...-
T Consensus 152 ~~~~-~~~ii~t~i~~dGt~-----~G~d-~l~~~~---~~~pv--iasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~~ 219 (228)
T PRK04128 152 LKNY-VNRFIYTSIERDGTL-----TGIE-EIERFW---GDEEF--IYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGRI 219 (228)
T ss_pred HHHH-hCEEEEEeccchhcc-----cCHH-HHHHhc---CCCCE--EEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCCc
Confidence 8777 555566777777763 2323 443332 46899 7899999999999999999999999999999875
Q ss_pred HHH
Q 037779 261 PVR 263 (310)
Q Consensus 261 p~~ 263 (310)
+..
T Consensus 220 ~~~ 222 (228)
T PRK04128 220 SLE 222 (228)
T ss_pred CHH
Confidence 543
No 60
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=99.48 E-value=1.3e-12 Score=114.57 Aligned_cols=153 Identities=24% Similarity=0.353 Sum_probs=120.1
Q ss_pred hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCC--CCCchHHHHHHHHHhhcc-eecccccC
Q 037779 127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEA--GTGNIVEAVRHVRSVMGD-IRVLRNMD 195 (310)
Q Consensus 127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~--~~~~~~~~~~~~~~~~~~-~~~l~~~~ 195 (310)
+.+.+.+...++. ++..++|+|.+|+.+..+ .+-+.|++. +.. .-++..+++++++.+.++ |.+++|++
T Consensus 59 ~~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~ 138 (262)
T COG2022 59 DGILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTT 138 (262)
T ss_pred chHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccC
Confidence 4555666665555 788899999999987764 356888764 332 235678999999999998 99999999
Q ss_pred chhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 196 DDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 196 ~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
+|+++.. +.++. +...++.+.+..++|| |+..||++|+|+.+++++|+|+|++.|+|.
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGSg~G~~-n~~~l~iiie~a~VPv--iVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGSGLGLQ-NPYNLEIIIEEADVPV--IVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccCCcCcC-CHHHHHHHHHhCCCCE--EEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 9999652 11222 3445566666668999 568999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCChhhHH
Q 037779 257 KSGDPVRRARAIVQAVTNYSDPDVLA 282 (310)
Q Consensus 257 ~~~dp~~~~~~~~~~~~~~~~~~~~~ 282 (310)
++.||..|+++|.-++++.+-.....
T Consensus 216 ~A~DPv~MA~Af~~Av~AGrlAylAG 241 (262)
T COG2022 216 RAKDPVAMARAFALAVEAGRLAYLAG 241 (262)
T ss_pred ccCChHHHHHHHHHHHHHhHHHHHcC
Confidence 99999999999999999876544433
No 61
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.48 E-value=5.8e-12 Score=111.83 Aligned_cols=172 Identities=16% Similarity=0.261 Sum_probs=123.5
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCc-c-eEeecc-ccchHHHHHHHHcCCCeeeecC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTI-P-VMAKAR-IGHFVEAQILEAIGVDYVDESE 122 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~l-P-v~~kd~-i~~~~~~~~~~~aGad~v~~~~ 122 (310)
..++.+.++|...+ -+ .... ..-.+.++++++...- | +++.-. +.+.++++.+.++||+++..+.
T Consensus 29 ~~~~al~~~Gi~~i-Ei-------t~~~----~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~ 96 (213)
T PRK06552 29 KISLAVIKGGIKAI-EV-------TYTN----PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS 96 (213)
T ss_pred HHHHHHHHCCCCEE-EE-------ECCC----ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC
Confidence 67999999999987 22 1111 1116678888876532 2 333322 2355788999999999997543
Q ss_pred CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779 123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 202 (310)
. .+++.+..++ .+++++.+++|+.|+..+.+.|+|+++++....
T Consensus 97 ~--~~~v~~~~~~--~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~-------------------------------- 140 (213)
T PRK06552 97 F--NRETAKICNL--YQIPYLPGCMTVTEIVTALEAGSEIVKLFPGST-------------------------------- 140 (213)
T ss_pred C--CHHHHHHHHH--cCCCEECCcCCHHHHHHHHHcCCCEEEECCccc--------------------------------
Confidence 2 4567776665 569999999999999999999999999862100
Q ss_pred hccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC------CCHHHHHHHHHHHHH
Q 037779 203 AKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS------GDPVRRARAIVQAVT 273 (310)
Q Consensus 203 ~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~------~dp~~~~~~~~~~~~ 273 (310)
. ..+.++.++.. .++|+ ++.||| +++++.+++++|++++.+||.|+.. .++.+.++++.+.++
T Consensus 141 ---~--G~~~ik~l~~~~p~ip~--~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 141 ---L--GPSFIKAIKGPLPQVNV--MVTGGV-NLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred ---C--CHHHHHHHhhhCCCCEE--EEECCC-CHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 1 13345555543 35888 467999 5999999999999999999999987 457777777777665
No 62
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.48 E-value=5.7e-12 Score=109.21 Aligned_cols=178 Identities=23% Similarity=0.287 Sum_probs=118.1
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh---hcCcceEeeccccchHHHHHHHHcCCCeeeec
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS---SVTIPVMAKARIGHFVEAQILEAIGVDYVDES 121 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~---~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~ 121 (310)
.+.++.+.++|++++ .++ ...++. ..+...++++++ ..++++++++ .++.+.++|+|+++..
T Consensus 15 ~~~l~~l~~~g~~~i-~lr-------~~~~~~-~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~vh~~ 79 (196)
T cd00564 15 LEVVEAALKGGVTLV-QLR-------EKDLSA-RELLELARALRELCRKYGVPLIIND------RVDLALAVGADGVHLG 79 (196)
T ss_pred HHHHHHHHhcCCCEE-EEe-------CCCCCH-HHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecC
Confidence 467889999999998 442 111110 111234444443 3467777653 3557888999999844
Q ss_pred CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779 122 EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 201 (310)
.........+.+ ...+..+.++++|.+++.++.+.|+|++.+. +.+.+ ....+
T Consensus 80 ~~~~~~~~~~~~--~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~-~~~~~---------------------~~~~~--- 132 (196)
T cd00564 80 QDDLPVAEARAL--LGPDLIIGVSTHSLEEALRAEELGADYVGFG-PVFPT---------------------PTKPG--- 132 (196)
T ss_pred cccCCHHHHHHH--cCCCCEEEeeCCCHHHHHHHhhcCCCEEEEC-CccCC---------------------CCCCC---
Confidence 321122222222 3346788899999999999999999999874 21111 00000
Q ss_pred hhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779 202 FAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 202 ~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
.......+.++.+++..++|| ++.||| +++++.+++++|+++|++||+|+.++||.+.++++.
T Consensus 133 --~~~~~~~~~~~~~~~~~~~pv--~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 133 --AGPPLGLELLREIAELVEIPV--VAIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred --CCCCCCHHHHHHHHHhCCCCE--EEECCC-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 001224667777776667899 567999 589999999999999999999999999988887764
No 63
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.46 E-value=3.1e-12 Score=110.79 Aligned_cols=165 Identities=20% Similarity=0.232 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~ 123 (310)
.+.++++.++|++.+ +||....+...+ ......+.++++..+.+++++++ ++.+.+.|+|+||. ...
T Consensus 15 ~~~l~~~~~~gv~~v-~lR~k~~~~~~~-----~~~a~~l~~~~~~~~~~liin~~------~~la~~~~~dGvHl~~~~ 82 (180)
T PF02581_consen 15 LEQLEAALAAGVDLV-QLREKDLSDEEL-----LELARRLAELCQKYGVPLIINDR------VDLALELGADGVHLGQSD 82 (180)
T ss_dssp HHHHHHHHHTT-SEE-EEE-SSS-HHHH-----HHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT-SEEEEBTTS
T ss_pred HHHHHHHHHCCCcEE-EEcCCCCCccHH-----HHHHHHHHHHhhcceEEEEecCC------HHHHHhcCCCEEEecccc
Confidence 477889999999998 564111111111 11133445555666899998875 34678899999994 344
Q ss_pred CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+++.+..+.+ +.+..+.+++||.+|+..+.+.|+||+.+. +.+.+ .++..
T Consensus 83 ~~~~~~r~~~---~~~~~ig~S~h~~~e~~~a~~~g~dYv~~g-pvf~T---------------------~sk~~----- 132 (180)
T PF02581_consen 83 LPPAEARKLL---GPDKIIGASCHSLEEAREAEELGADYVFLG-PVFPT---------------------SSKPG----- 132 (180)
T ss_dssp SSHHHHHHHH---TTTSEEEEEESSHHHHHHHHHCTTSEEEEE-TSS-----------------------SSSSS-----
T ss_pred cchHHhhhhc---ccceEEEeecCcHHHHHHhhhcCCCEEEEC-CccCC---------------------CCCcc-----
Confidence 4444444333 356899999999999999999999999985 44321 11100
Q ss_pred ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779 204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai 255 (310)
.....++.+.++.+..++||++ -||| +++++.++.++|++||.+.|+|
T Consensus 133 -~~~~g~~~l~~~~~~~~~pv~A--lGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 133 -APPLGLDGLREIARASPIPVYA--LGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp --TTCHHHHHHHHHHHTSSCEEE--ESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred -ccccCHHHHHHHHHhCCCCEEE--EcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 0122466777777777899965 5999 6999999999999999999976
No 64
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.46 E-value=6.3e-12 Score=110.32 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccch--HHHHHHHHcCCCeeeecC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHF--VEAQILEAIGVDYVDESE 122 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~--~~~~~~~~aGad~v~~~~ 122 (310)
+.++.+.+. ++++- +. .|. .+.++ ++.++.+++. .++|+.+...+.+. ..++.+.++|+|++..+.
T Consensus 17 ~~~~~l~~~-i~~ie-ig-~~~-~~~~g-------~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 17 ELAKKVPDG-VDIIE-AG-TPL-IKSEG-------MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred HHHHHhhhc-CCEEE-cC-CHH-HHHhC-------HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 678888887 88862 21 011 22233 6789999886 58898886554322 245778899999998554
Q ss_pred CCC---hhHHHHHHHhcCCCCcEE---eecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779 123 VLT---PADEENHINKHNFRVPFV---CGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 123 ~~~---~~~~~~~~~~~~~~l~v~---~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
..+ ..++.+.++++ ++.++ .++.|+.++.++...|+|++.++ +.+++. +.
T Consensus 86 ~~~~~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~-~~~~~~-------------------~~-- 141 (202)
T cd04726 86 AAPLSTIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILH-RGIDAQ-------------------AA-- 141 (202)
T ss_pred eCCHHHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc-Cccccc-------------------cc--
Confidence 322 23455666554 45544 57889999988888899999885 222111 00
Q ss_pred hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779 197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~ 267 (310)
+.....+.++.+.+..++|+ .+.||| +++++.+++++|+|++++||+|++++||.+.+++
T Consensus 142 --------~~~~~~~~i~~~~~~~~~~i--~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 142 --------GGWWPEDDLKKVKKLLGVKV--AVAGGI-TPDTLPEFKKAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred --------CCCCCHHHHHHHHhhcCCCE--EEECCc-CHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence 00123455566655456899 457999 5999999999999999999999999999877664
No 65
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.46 E-value=5.3e-12 Score=113.01 Aligned_cols=165 Identities=24% Similarity=0.323 Sum_probs=117.5
Q ss_pred ChHHHHHHHhhcCcceEeecccc-----c--hHHHHHHHHcCCCeeeecC---CCChhHHHHHHHh-cCCCCcEEeecCC
Q 037779 80 DPQLIKQIKSSVTIPVMAKARIG-----H--FVEAQILEAIGVDYVDESE---VLTPADEENHINK-HNFRVPFVCGCRN 148 (310)
Q Consensus 80 ~~~~i~~i~~~~~lPv~~kd~i~-----~--~~~~~~~~~aGad~v~~~~---~~~~~~~~~~~~~-~~~~l~v~~~v~t 148 (310)
....++.+++.+++|+..++... + ...++.+.++|+|++++.+ .++..++.+.+.. +..++.+++++++
T Consensus 44 ~~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 44 QALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred CHHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 37788888888899999875432 1 1346788889999998543 2444455444444 4467888899999
Q ss_pred HHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEE
Q 037779 149 LGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVV 225 (310)
Q Consensus 149 ~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv 225 (310)
.+++..+.+.++++|.+.+. .+++. ...+..++ ...+..+.+++. .++||
T Consensus 124 ~~~~~~~~~~~~~~I~~~p~~~igt~~----------------~~~~~~~~----------~i~~~~~~ir~~~~~~pv- 176 (223)
T PRK04302 124 PETSAAAAALGPDYVAVEPPELIGTGI----------------PVSKAKPE----------VVEDAVEAVKKVNPDVKV- 176 (223)
T ss_pred HHHHHHHhcCCCCEEEEeCccccccCC----------------CCCcCCHH----------HHHHHHHHHHhccCCCEE-
Confidence 99999888889999987642 22221 00000110 023444556553 36899
Q ss_pred EEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 226 ~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~ 272 (310)
+++|||++++++.++.+.|+|||+|||++++.+||...+++|.+.+
T Consensus 177 -i~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~~ 222 (223)
T PRK04302 177 -LCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSPL 222 (223)
T ss_pred -EEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhhc
Confidence 6799999999999999999999999999999999999998887643
No 66
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.45 E-value=3.2e-12 Score=132.91 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=132.9
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~~ 124 (310)
+.++.+.++|+++| +||-...+.+.+ ......+..+++..+++++++|+ ++.+.++|+| ||. ...+
T Consensus 23 ~~l~~~l~~g~~~i-qlR~K~~~~~~~-----~~~a~~l~~l~~~~~~~liind~------~~la~~~~~d-VHlg~~dl 89 (755)
T PRK09517 23 GIVDSAISGGVSVV-QLRDKNAGVEDV-----RAAAKELKELCDARGVALVVNDR------LDVAVELGLH-VHIGQGDT 89 (755)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCCC-eecCCCcC
Confidence 56788888999998 563111111111 11133445556666899999876 3467889999 883 3434
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHH----h---CCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCch
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIR----E---GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~----~---Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 197 (310)
+.....+. .+.+..+.++|||.+|+..+.. . |+||+.+. +.+. +.++.
T Consensus 90 ~~~~~r~~---~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~G-pvf~---------------------T~tK~ 144 (755)
T PRK09517 90 PYTQARRL---LPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIG-PVAS---------------------TATKP 144 (755)
T ss_pred CHHHHHHh---cCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEEC-Cccc---------------------cCCCC
Confidence 43333322 3356789999999999876432 2 49999984 4332 11110
Q ss_pred hHHhhhccCCCcHHHHHHHHhcCC---CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 198 EVFTFAKNIAAPYDLVMQTKQLGR---LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~i~~~~~---iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
+. .....++.++++.+..+ +||++| ||| +++++.++.++|++||.+.|+|++++||.+.+++|.+.++.
T Consensus 145 ~~-----~~~lG~~~l~~~~~~~~~~~iPv~Ai--GGI-~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~ 216 (755)
T PRK09517 145 DA-----PPALGVDGIAEIAAVAQDHGIASVAI--GGV-GLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQP 216 (755)
T ss_pred CC-----CCCCCHHHHHHHHHhcCcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHH
Confidence 00 00124677777776655 999665 999 69999999999999999999999999999999999999998
Q ss_pred CCChhhHHhhhh
Q 037779 275 YSDPDVLAEVSC 286 (310)
Q Consensus 275 ~~~~~~~~~~~~ 286 (310)
.+.|..--|.++
T Consensus 217 ~~~~~~~~~~~~ 228 (755)
T PRK09517 217 TRSPETQTELSQ 228 (755)
T ss_pred hhcccccccccc
Confidence 877766555544
No 67
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.45 E-value=9.4e-12 Score=109.71 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=120.1
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHHHHHHHHcCCCeeeecCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVEAQILEAIGVDYVDESEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~~~~~~~aGad~v~~~~~ 123 (310)
.+.++.+.++|++.|...- -|.....+. ...++.++++++.++.|+.+..++. ..+.++.+.++|+|.++.+..
T Consensus 14 ~~~~~~~~~~g~d~i~~~~---~Dg~~~~~~--~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDV---MDGHFVPNL--TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred HHHHHHHHHcCCCEEEEcC---CCCCCCCCc--ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccC
Confidence 4789999999999984310 011111111 1347899999987778875544442 234567788999999775433
Q ss_pred C--ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhH
Q 037779 124 L--TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 124 ~--~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 199 (310)
. ......+.+++++....++++++|..+..+....++|++.+.+. ..++. .+.
T Consensus 89 ~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~~---- 145 (210)
T TIGR01163 89 ASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQ-------------------KFI---- 145 (210)
T ss_pred CchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcc-------------------ccc----
Confidence 2 23344555555665666667788877777777778998765422 11110 000
Q ss_pred HhhhccCCCcHHHHHHHHhc-----CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779 200 FTFAKNIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 200 ~~~~~~~~~~~~l~~~i~~~-----~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~ 268 (310)
....+.++.+++. .++|+ .+.||| +++++.++++.|+|++++||+|++++||.+++++|
T Consensus 146 -------~~~~~~i~~i~~~~~~~~~~~~i--~v~GGI-~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 146 -------PDTLEKIREVRKMIDENGLSILI--EVDGGV-NDDNARELAEAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCceE--EEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 0112233333322 13677 457999 59999999999999999999999999999888776
No 68
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.44 E-value=8.5e-12 Score=110.93 Aligned_cols=189 Identities=14% Similarity=0.156 Sum_probs=111.2
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCC---CCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeee
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVAR---MSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDE 120 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~---~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~ 120 (310)
.+.++.+.++|+++|+ +. . ..|... .-.++.++++++.+..|+.+..++.. .+.++.+.++|+|.+..
T Consensus 19 ~~~~~~~~~~G~~~i~-l~-----~--~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v 90 (220)
T PRK05581 19 GEEVKAVEAAGADWIH-VD-----V--MDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF 90 (220)
T ss_pred HHHHHHHHHcCCCEEE-Ee-----C--ccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 3789999999999994 31 1 111110 01367888888765544433333332 13556677899999654
Q ss_pred cCCC--ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCc
Q 037779 121 SEVL--TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 121 ~~~~--~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
+... .+....+.+++++..+.+.+..+|..+..+....++|++.+.+. ..++. ...
T Consensus 91 h~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~~- 150 (220)
T PRK05581 91 HVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-------------------KFI- 150 (220)
T ss_pred eeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc-------------------ccc-
Confidence 4321 23344444444433333333335666666666667898876421 11110 000
Q ss_pred hhHHhhhccCCCcHHHHHHHHhcC---CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779 197 DEVFTFAKNIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 197 d~~~~~~~~~~~~~~l~~~i~~~~---~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~ 272 (310)
....+.++.+++.. ++|+.+.+.||| +++++.++.+.|+|+|+|||+|++++||.+++++|++.+
T Consensus 151 ----------~~~~~~i~~~~~~~~~~~~~~~i~v~GGI-~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 151 ----------PEVLEKIRELRKLIDERGLDILIEVDGGI-NADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred ----------HHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 00122223332221 223211357999 579999999999999999999999999999999998764
No 69
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=99.43 E-value=1.2e-11 Score=110.65 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=124.3
Q ss_pred ccceeeecCCcccc----------CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779 28 VGLAQMLRGGVIMD----------VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM 96 (310)
Q Consensus 28 ~~~~~~l~~g~i~~----------~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~ 96 (310)
.+.++++.+|.... ..+| ++|+.|.+.|+++++.. |.....| ...+.+.++++++. +|+.
T Consensus 11 ~g~~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~iv-----DLd~~~~--~~~n~~~i~~i~~~--~~v~ 81 (221)
T TIGR00734 11 DGIAVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEIGARFIYIA-----DLDRIVG--LGDNFSLLSKLSKR--VELI 81 (221)
T ss_pred CCEEEEccccCcccccccccceecCCCHHHHHHHHHHcCCCEEEEE-----EcccccC--CcchHHHHHHHHhh--CcEE
Confidence 45667777666433 3465 88999999999998544 2222212 24568899999887 4999
Q ss_pred eeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCc
Q 037779 97 AKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 97 ~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~ 173 (310)
+...+.+.++++.+.. .||+.|. .+..+..+++++.+. ..+.+++++.. +..+|+.. .
T Consensus 82 vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~-----~vvslD~~~g~------------v~~~g~~~--~ 142 (221)
T TIGR00734 82 ADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLRECY-----TVVSLDFKEKF------------LDASGLFE--S 142 (221)
T ss_pred EcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHhh-----hEEEEEeECCc------------cccccccc--c
Confidence 8888877777776654 3699986 555544444444331 23333332210 00111110 1
Q ss_pred hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
..+..++....+. ...+..++.|++ ..+.+.++++.+.+..++|+ |++|||+|++|+.++.+.|+++|++||
T Consensus 143 ~~~~~~~~~~~g~-~ii~tdI~~dGt-----~~G~d~eli~~i~~~~~~pv--ia~GGi~s~ed~~~l~~~Ga~~vivgs 214 (221)
T TIGR00734 143 LEEVRDFLNSFDY-GLIVLDIHSVGT-----MKGPNLELLTKTLELSEHPV--MLGGGISGVEDLELLKEMGVSAVLVAT 214 (221)
T ss_pred HHHHHHHHHhcCC-EEEEEECCcccc-----CCCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHCCCCEEEEhH
Confidence 2223333333332 123344555543 24568999999998888999 789999999999999999999999999
Q ss_pred ccccC
Q 037779 254 GVFKS 258 (310)
Q Consensus 254 ai~~~ 258 (310)
+|+..
T Consensus 215 al~~g 219 (221)
T TIGR00734 215 AVHKG 219 (221)
T ss_pred HhhCC
Confidence 99874
No 70
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.43 E-value=5.6e-11 Score=106.19 Aligned_cols=185 Identities=17% Similarity=0.193 Sum_probs=130.5
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccchH-HHHHHHHcCCCeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHFV-EAQILEAIGVDYVD 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~~-~~~~~~~aGad~v~ 119 (310)
+.++.+.++|+++++ +.+++|. . .|+ ++.++.+++. +++|+-++-.+.+.+ .++.+.++|||.|.
T Consensus 20 ~~i~~l~~~g~d~lHiDimDG~FVPN-~-tfg-------~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 20 EEVDNVLKAGADWVHFDVMDNHYVPN-L-TIG-------PMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCC-c-ccC-------HHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 679999999999973 2335553 2 344 8899999998 699999888886543 45788889999987
Q ss_pred ec-C-CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhhcceecccc
Q 037779 120 ES-E-VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 120 ~~-~-~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~~~~~~l~~ 193 (310)
.+ + ...+.+.++.+++++....+.....|+-+...-+-.-.|+|.+. .++++| .+.+
T Consensus 91 ~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~----------------- 153 (223)
T PRK08745 91 FHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPS----------------- 153 (223)
T ss_pred EcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHH-----------------
Confidence 54 2 23466788888887766777777777766665555567876432 344433 1111
Q ss_pred cCchhHHhhhccCCCcHHHHHHHH----hc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~----~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~ 268 (310)
..+.+++++ +. .++.+ -+.||| +.+++.++.++|||.+++||+|++++||.+.++++
T Consensus 154 ---------------~l~KI~~l~~~~~~~~~~~~I--eVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~l 215 (223)
T PRK08745 154 ---------------ALDKLRAIRKKIDALGKPIRL--EIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQM 215 (223)
T ss_pred ---------------HHHHHHHHHHHHHhcCCCeeE--EEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHH
Confidence 122222222 21 12334 458999 59999999999999999999999999999999999
Q ss_pred HHHHHc
Q 037779 269 VQAVTN 274 (310)
Q Consensus 269 ~~~~~~ 274 (310)
++.+.+
T Consensus 216 r~~~~~ 221 (223)
T PRK08745 216 RAAVAA 221 (223)
T ss_pred HHHHHh
Confidence 887643
No 71
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=6.7e-11 Score=104.06 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=134.4
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~ 120 (310)
+.+++++++|+++++ +.+++|. . .|+ +..++++++.+..|+-+.-++...+ .++.+.++|||.|..
T Consensus 20 ~el~~~~~agad~iH~DVMDghFVPN-i-TfG-------p~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~ 90 (220)
T COG0036 20 EELKALEAAGADLIHIDVMDGHFVPN-I-TFG-------PPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITF 90 (220)
T ss_pred HHHHHHHHcCCCEEEEeccCCCcCCC-c-ccC-------HHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEE
Confidence 789999999999973 3336664 2 455 8899999999999999998887544 457888899999874
Q ss_pred c--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhhcceeccccc
Q 037779 121 S--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 121 ~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
+ +...+.+.++.+++++....+.....|+-+.....-.-+|+|.+. .|+++| .+.++++.+
T Consensus 91 H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki------------- 157 (220)
T COG0036 91 HAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKI------------- 157 (220)
T ss_pred EeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHH-------------
Confidence 3 334577888888887666667777888888888777778877432 455544 222222211
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~ 273 (310)
.++.+.+.+ .. ++.+-+.||| +.+++.++.++|||-+++||++++..|-.+.++.++....
T Consensus 158 ---------------~~lr~~~~~-~~-~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 158 ---------------RELRAMIDE-RL-DILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred ---------------HHHHHHhcc-cC-CeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHhh
Confidence 112222222 11 3333568999 5999999999999999999999999997777777766553
No 72
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.7e-12 Score=118.63 Aligned_cols=149 Identities=29% Similarity=0.448 Sum_probs=111.1
Q ss_pred HHHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHHH----Hhhc-CcceEeeccccchHHHHHHHHcCCCe
Q 037779 46 EQARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQI----KSSV-TIPVMAKARIGHFVEAQILEAIGVDY 117 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~i----~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~ 117 (310)
+.|+.+.+.|++.| +|| |.|+-.+...|+.++.+++++.++ ++++ ++||++|.++|+.+.
T Consensus 83 eaA~~~~~~g~~~I-dlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~----------- 150 (323)
T COG0042 83 EAAKIAEELGADII-DLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDD----------- 150 (323)
T ss_pred HHHHHHHhcCCCEE-eeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcc-----------
Confidence 66889999998988 999 555555555689999999987655 5567 499999999984211
Q ss_pred eeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCch
Q 037779 118 VDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 118 v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 197 (310)
+ .. ..+-++.+.+.|++.+.+||+... ..+.
T Consensus 151 ----~-~~----------------------~~~ia~~~~~~g~~~ltVHgRtr~-------------------~~y~--- 181 (323)
T COG0042 151 ----D-IL----------------------ALEIARILEDAGADALTVHGRTRA-------------------QGYL--- 181 (323)
T ss_pred ----c-cc----------------------HHHHHHHHHhcCCCEEEEecccHH-------------------hcCC---
Confidence 0 00 112234455678999999976211 1111
Q ss_pred hHHhhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 037779 198 EVFTFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~ 265 (310)
-..+|+.+..+++..+ +|| |++|+|.|++++.++++ .|+||||+|++.+..++....+
T Consensus 182 --------~~ad~~~I~~vk~~~~~ipv--i~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 182 --------GPADWDYIKELKEAVPSIPV--IANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred --------CccCHHHHHHHHHhCCCCeE--EeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 1247999999999876 899 78999999999999998 5899999999999988876554
No 73
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.41 E-value=3.9e-11 Score=107.80 Aligned_cols=181 Identities=20% Similarity=0.286 Sum_probs=123.7
Q ss_pred CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-----chHHHHHHH
Q 037779 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-----HFVEAQILE 111 (310)
Q Consensus 37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-----~~~~~~~~~ 111 (310)
+.|....++++++.+.++|+-.+...+.++.+ ...+.++++++..+.|+.++.+.. ..+.++.+.
T Consensus 8 a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~----------~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~ 77 (236)
T cd04730 8 APMAGVSTPELAAAVSNAGGLGFIGAGYLTPE----------ALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVAL 77 (236)
T ss_pred CCCCCCCCHHHHHHHHhCCCccccCCCCCCHH----------HHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHH
Confidence 45556678999999999986443111000000 013455666655445655554443 224678888
Q ss_pred HcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecc
Q 037779 112 AIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 112 ~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l 191 (310)
++|+|.|+.+.. .+.++.+.+++ .++.++..+++.++++.+.+.|+|++.+.+...+++.
T Consensus 78 ~~g~d~v~l~~~-~~~~~~~~~~~--~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~----------------- 137 (236)
T cd04730 78 EEGVPVVSFSFG-PPAEVVERLKA--AGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHR----------------- 137 (236)
T ss_pred hCCCCEEEEcCC-CCHHHHHHHHH--cCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCC-----------------
Confidence 999999986554 45666666665 3578888889999999988999999987654222210
Q ss_pred cccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 192 RNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
. . .+ ...+++++.+++..++|| ++.|||++++++.++++.|+|||++||+|++..+
T Consensus 138 -~-~--------~~-~~~~~~i~~i~~~~~~Pv--i~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e 193 (236)
T cd04730 138 -G-T--------FD-IGTFALVPEVRDAVDIPV--IAAGGIADGRGIAAALALGADGVQMGTRFLATEE 193 (236)
T ss_pred -C-c--------cc-cCHHHHHHHHHHHhCCCE--EEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence 0 0 00 124677788777667899 5689999899999999999999999999999764
No 74
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.40 E-value=3e-11 Score=106.37 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=110.1
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCC---CCCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVA---RMSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~---~~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~ 121 (310)
+.++.+.++|+++++ ++ ...|.. ..-.++.++++++.++.|+.+..++.+ .+.++.+.++|+|.++.+
T Consensus 16 ~~~~~~~~~G~~~i~-l~-------~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 16 EELKRLEEAGADWIH-ID-------VMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred HHHHHHHHcCCCEEE-Ee-------cccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 679999999999984 31 111110 001257888888766555544444432 235677789999997654
Q ss_pred CCC--ChhHHHHHHHhcCCCCcEEeec--CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCch
Q 037779 122 EVL--TPADEENHINKHNFRVPFVCGC--RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 122 ~~~--~~~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 197 (310)
... .+.+..+.+++ .++.++..+ ++..+..+....++|++.+.+...+++- ....
T Consensus 88 ~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg-----------------~~~~-- 146 (211)
T cd00429 88 AEATDHLHRTIQLIKE--LGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG-----------------QKFI-- 146 (211)
T ss_pred ccchhhHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC-----------------cccC--
Confidence 332 23344444444 345544444 3444544445556899876432111110 0000
Q ss_pred hHHhhhccCCCcHHHHHHHHhcC-----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779 198 EVFTFAKNIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~i~~~~-----~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~ 268 (310)
....+.++.+++.. ++|+ ++.|||+ ++++.++.+.|+|+|++||+|++.+||.+.+++|
T Consensus 147 ---------~~~~~~i~~~~~~~~~~~~~~pi--~v~GGI~-~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 147 ---------PEVLEKIRKLRELIPENNLNLLI--EVDGGIN-LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred ---------HHHHHHHHHHHHHHHhcCCCeEE--EEECCCC-HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 00123334443322 3788 4579995 8999999999999999999999999999888876
No 75
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.40 E-value=3.2e-11 Score=106.37 Aligned_cols=178 Identities=21% Similarity=0.189 Sum_probs=114.9
Q ss_pred HHHHHHHHcCCcEEEecccccchh-hhcCCCCCCCChHHHHHHHhhc-CcceEeeccccch--HHHHHHHHcCCCeeeec
Q 037779 46 EQARIAEEAGACAVMALERVPADI-RAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHF--VEAQILEAIGVDYVDES 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~-r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~--~~~~~~~~aGad~v~~~ 121 (310)
+.++.+ +.|.++|-+- +.. ..++ ++.++.+++.. +.++.+...+-+. ..++.+.++|||++..+
T Consensus 16 ~~~~~l-~~~v~~iev~----~~l~~~~g-------~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 16 ELAEKV-ADYVDIIEIG----TPLIKNEG-------IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVL 83 (206)
T ss_pred HHHHHc-ccCeeEEEeC----CHHHHHhC-------HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence 567777 6788877321 111 1222 67888888774 5555544322221 24778889999999755
Q ss_pred CCCC---hhHHHHHHHhcCCCCcEEeecCC----HHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779 122 EVLT---PADEENHINKHNFRVPFVCGCRN----LGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 122 ~~~~---~~~~~~~~~~~~~~l~v~~~v~t----~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
...+ +.++++.+++ .++.+++++.+ .++++.+.+.|+|+++++ +.+++. ..
T Consensus 84 ~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~-pg~~~~-------------------~~ 141 (206)
T TIGR03128 84 GVADDATIKGAVKAAKK--HGKEVQVDLINVKDKVKRAKELKELGADYIGVH-TGLDEQ-------------------AK 141 (206)
T ss_pred ccCCHHHHHHHHHHHHH--cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc-CCcCcc-------------------cC
Confidence 3322 3456666655 46777766433 367788888899999986 333221 00
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA 271 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~ 271 (310)
.....+.++.+++.. ..++ .+.||| +++++.+++++|++++++||+|++++||.+.++.|++.
T Consensus 142 -----------~~~~~~~i~~l~~~~~~~~i--~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 142 -----------GQNPFEDLQTILKLVKEARV--AVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred -----------CCCCHHHHHHHHHhcCCCcE--EEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 011233444444432 2344 347999 69999999999999999999999999999999988753
No 76
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.40 E-value=2.2e-11 Score=111.18 Aligned_cols=181 Identities=23% Similarity=0.271 Sum_probs=114.8
Q ss_pred HHHHHHHHcCCcEEEecc-ccc-------c----hhhh-cCCCCCCCChHHHHHHHhh-cCcceEeecccc------chH
Q 037779 46 EQARIAEEAGACAVMALE-RVP-------A----DIRA-QGGVARMSDPQLIKQIKSS-VTIPVMAKARIG------HFV 105 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~-~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~------~~~ 105 (310)
+.++.+.++|++.| -|. |.. . ..|+ ..|.....-++.++++|+. +++|+......+ ...
T Consensus 28 ~~~~~l~~~Gad~i-ElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~ 106 (256)
T TIGR00262 28 EIIKTLIEAGADAL-ELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEE 106 (256)
T ss_pred HHHHHHHHcCCCEE-EECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHH
Confidence 67999999999997 443 221 1 1111 2244434456778888876 789976433322 134
Q ss_pred HHHHHHHcCCCeeeecCCC--ChhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhCCCEEEEec-CCCCCchHHHHHHH
Q 037779 106 EAQILEAIGVDYVDESEVL--TPADEENHINKHNFRVPFVCGCRN-LGESLRRIREGAAMIRTKG-EAGTGNIVEAVRHV 181 (310)
Q Consensus 106 ~~~~~~~aGad~v~~~~~~--~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~Gad~I~v~g-~~~~~~~~~~~~~~ 181 (310)
.++.+.++|++.+++++.. ...++.+.+++++.....++..+| .+.+....+....++.+.+ .++||.-
T Consensus 107 f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~------- 179 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGAR------- 179 (256)
T ss_pred HHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCc-------
Confidence 6788899999999877652 123455556666666555555555 4444444444332443321 1333310
Q ss_pred HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..+. ....+.++.+++..+.|| +++|||+|+++++++.++|||||+|||+|++
T Consensus 180 ----------~~~~-----------~~~~~~i~~lr~~~~~pi--~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 180 ----------NRAA-----------SALNELVKRLKAYSAKPV--LVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred ----------ccCC-----------hhHHHHHHHHHhhcCCCE--EEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0011 124667788887767898 5699999999999999999999999999987
No 77
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=99.40 E-value=8e-12 Score=115.80 Aligned_cols=175 Identities=25% Similarity=0.386 Sum_probs=132.3
Q ss_pred HHHHHHcCCCeeeec----C--CCChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCC--C
Q 037779 107 AQILEAIGVDYVDES----E--VLTPADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEA--G 170 (310)
Q Consensus 107 ~~~~~~aGad~v~~~----~--~~~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~--~ 170 (310)
.+.+.+.|++.|... + ......+.+.+...++. ++-.++|+|.+|+.+..+ .|-+.|++. ++. .
T Consensus 100 ~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~l 179 (326)
T PRK11840 100 AAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTL 179 (326)
T ss_pred HHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCc
Confidence 356777899998521 1 11224677777765555 788999999999987664 266888864 442 2
Q ss_pred CCchHHHHHHHHHhhcc-eecccccCchhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccC
Q 037779 171 TGNIVEAVRHVRSVMGD-IRVLRNMDDDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 171 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~G 230 (310)
.+++.+++++++++.++ |.++++..+|+.... .+++. +.+.++.+.+..++|| +..+
T Consensus 180 lpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~e~~~vpV--ivdA 256 (326)
T PRK11840 180 YPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIVEGATVPV--LVDA 256 (326)
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHHHcCCCcE--EEeC
Confidence 35678999999999776 888899888777431 01111 4666777777678999 5689
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV 284 (310)
Q Consensus 231 GI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~ 284 (310)
||++++|+.+++++|||||++.|+|.+++||..|+++|+.++++.+.......+
T Consensus 257 GIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr~a~~ag~~ 310 (326)
T PRK11840 257 GVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGRLAYLAGRM 310 (326)
T ss_pred CCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999987665444433
No 78
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.39 E-value=1.7e-11 Score=115.88 Aligned_cols=196 Identities=20% Similarity=0.298 Sum_probs=126.2
Q ss_pred CCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch---HH------
Q 037779 36 GGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF---VE------ 106 (310)
Q Consensus 36 ~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~---~~------ 106 (310)
+|.|....++++|.+..++|.-++.-....+.+ .+ -+.|+++++.++-|+.++.+.... ..
T Consensus 16 qapM~~is~~~LaaAVs~aGglG~l~~~~~~~~--~l--------~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~ 85 (330)
T PF03060_consen 16 QAPMGGISTPELAAAVSNAGGLGFLGAGGLTPE--QL--------REEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPK 85 (330)
T ss_dssp E---TTTSSHHHHHHHHHTTSBEEEECTTSSHH--HH--------HHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHH
T ss_pred cCCCCCCChHHHHHHHHhCCCEeeccccccChH--HH--------HHHHHHHHhhccccccccccccCcccchhhhhhhh
Confidence 355666788999999999999886322111111 11 346778888888899887655311 11
Q ss_pred ------HHHHHHcCCC--------------eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779 107 ------AQILEAIGVD--------------YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 107 ------~~~~~~aGad--------------~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
.+...+.|.. .|..+...++.++++.++. .++.++..+.|+++++++.+.|+|.|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~--~gi~v~~~v~s~~~A~~a~~~G~D~iv~q 163 (330)
T PF03060_consen 86 ELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA--AGIKVIPQVTSVREARKAAKAGADAIVAQ 163 (330)
T ss_dssp HTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH--TT-EEEEEESSHHHHHHHHHTT-SEEEEE
T ss_pred hhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHH--cCCccccccCCHHHHHHhhhcCCCEEEEe
Confidence 2344445555 7765556555788888876 46899999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779 167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC 246 (310)
Q Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga 246 (310)
|...+||.. . .....+.+++.+.+..++|| |++|||.+.+++..++.+||
T Consensus 164 G~eAGGH~g------------------~----------~~~~~~~L~~~v~~~~~iPV--iaAGGI~dg~~iaaal~lGA 213 (330)
T PF03060_consen 164 GPEAGGHRG------------------F----------EVGSTFSLLPQVRDAVDIPV--IAAGGIADGRGIAAALALGA 213 (330)
T ss_dssp -TTSSEE-------------------------------SSG-HHHHHHHHHHH-SS-E--EEESS--SHHHHHHHHHCT-
T ss_pred ccccCCCCC------------------c----------cccceeeHHHHHhhhcCCcE--EEecCcCCHHHHHHHHHcCC
Confidence 876666521 0 01135778888888888999 68999999999999999999
Q ss_pred CEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 247 DGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 247 dgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
+||.+||.|+-++.- .....+++.+.+
T Consensus 214 ~gV~~GTrFl~t~Es-~~~~~~K~~l~~ 240 (330)
T PF03060_consen 214 DGVQMGTRFLATEES-GASDAYKQALVD 240 (330)
T ss_dssp SEEEESHHHHTSTTS--S-HHHHHHHHH
T ss_pred CEeecCCeEEecccc-cChHHHHHHHHh
Confidence 999999999987642 122444444443
No 79
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.39 E-value=4.5e-11 Score=104.39 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=111.5
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
+.++.+.++|++++ ++ +..... ..+.++.+++... +++.+.... +.+.++.+..+|+++++.+.
T Consensus 20 ~~~~~l~~~G~~~v-ev-------~~~~~~----~~~~i~~l~~~~~~~~iGag~v~-~~~~~~~a~~~Ga~~i~~p~-- 84 (190)
T cd00452 20 ALAEALIEGGIRAI-EI-------TLRTPG----ALEAIRALRKEFPEALIGAGTVL-TPEQADAAIAAGAQFIVSPG-- 84 (190)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCChh----HHHHHHHHHHHCCCCEEEEEeCC-CHHHHHHHHHcCCCEEEcCC--
Confidence 67999999999998 34 222211 2567888887764 444333332 34788899999999998432
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
...++.+..+. .++.+++++.|++|+..+.+.|+|++++... +
T Consensus 85 ~~~~~~~~~~~--~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~--~--------------------------------- 127 (190)
T cd00452 85 LDPEVVKAANR--AGIPLLPGVATPTEIMQALELGADIVKLFPA--E--------------------------------- 127 (190)
T ss_pred CCHHHHHHHHH--cCCcEECCcCCHHHHHHHHHCCCCEEEEcCC--c---------------------------------
Confidence 23455555554 4678888999999999999999999998521 0
Q ss_pred cCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 205 NIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
.. ..+.++.+++.. ++|+ ++.||| +++++.+++++|+++|.+||.++
T Consensus 128 -~~-g~~~~~~l~~~~~~~p~--~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 128 -AV-GPAYIKALKGPFPQVRF--MPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred -cc-CHHHHHHHHhhCCCCeE--EEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 01 244556665533 5788 567999 79999999999999999999999
No 80
>PRK08999 hypothetical protein; Provisional
Probab=99.38 E-value=1.3e-11 Score=115.78 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=111.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
+.++.+.++|+++| +++-...+.+.+ ......++++++..+++++++++. +.+.+.|+|+||.. ..+
T Consensus 148 ~~~~~~l~~g~~~v-qlR~k~~~~~~~-----~~~~~~l~~~~~~~~~~liind~~------~la~~~~~~GvHl~~~d~ 215 (312)
T PRK08999 148 ARLERALAAGIRLI-QLRAPQLPPAAY-----RALARAALGLCRRAGAQLLLNGDP------ELAEDLGADGVHLTSAQL 215 (312)
T ss_pred HHHHHHHHCCCcEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEECcH------HHHHhcCCCEEEcChhhc
Confidence 45777789999998 553111111111 111344555666678999998764 46788999999933 333
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
+.... ++.+.+..+.+++||.+|+..+.+.|+||+.+. +.+.+. ++..
T Consensus 216 ~~~~~----r~~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~g-pvf~t~---------------------tk~~------ 263 (312)
T PRK08999 216 AALAA----RPLPAGRWVAASCHDAEELARAQRLGVDFAVLS-PVQPTA---------------------SHPG------ 263 (312)
T ss_pred ChHhh----ccCCCCCEEEEecCCHHHHHHHHhcCCCEEEEC-CCcCCC---------------------CCCC------
Confidence 32222 223456889999999999999999999999984 544221 1100
Q ss_pred cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
......+.++.+.+..++||++| ||| +++++.+++++|++||.+-|+|+
T Consensus 264 ~~~~g~~~~~~~~~~~~~Pv~Ai--GGI-~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 264 AAPLGWEGFAALIAGVPLPVYAL--GGL-GPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEE--CCC-CHHHHHHHHHhCCCEEEEEEEeC
Confidence 01123566777777778999665 999 79999999999999999999874
No 81
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.37 E-value=4.1e-11 Score=109.64 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCcEEEecc-ccc-------c----hhhhc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chHH
Q 037779 46 EQARIAEEAGACAVMALE-RVP-------A----DIRAQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFVE 106 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~~ 106 (310)
++++.+.++||+.| -|. |.. + ..|+. +|.....-++.++++|+..++|++.....+ ...+
T Consensus 33 ~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F 111 (263)
T CHL00200 33 KALKILDKKGADII-ELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKF 111 (263)
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHH
Confidence 67999999999987 443 211 1 11221 233333446778888877889977654443 2246
Q ss_pred HHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHHHHHHH-HHhCCCEEEEe-cCCCCCchHHHHHHH
Q 037779 107 AQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLGESLRR-IREGAAMIRTK-GEAGTGNIVEAVRHV 181 (310)
Q Consensus 107 ~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~ea~~a-~~~Gad~I~v~-g~~~~~~~~~~~~~~ 181 (310)
++.+.++|+|++++++. +++ ++.+.+++++.....++..+|..+..+. .+..-.+|..- ..+.||.-
T Consensus 112 ~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~------- 183 (263)
T CHL00200 112 IKKISQAGVKGLIIPDL-PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLK------- 183 (263)
T ss_pred HHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCC-------
Confidence 78899999999998765 334 4445556677777777777776554444 44433466542 22333310
Q ss_pred HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..+. ..-.++++.+++..+.|+ .+.+||+++++++++.+.|||||+|||+|++
T Consensus 184 ----------~~~~-----------~~~~~~i~~ir~~t~~Pi--~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 184 ----------TELD-----------KKLKKLIETIKKMTNKPI--ILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred ----------cccc-----------HHHHHHHHHHHHhcCCCE--EEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0000 113567777777778999 4599999999999999999999999999954
No 82
>PLN02591 tryptophan synthase
Probab=99.37 E-value=4.6e-11 Score=108.43 Aligned_cols=180 Identities=17% Similarity=0.207 Sum_probs=118.0
Q ss_pred HHHHHHHHcCCcEEEecc-ccc-------c----hhhhc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chHH
Q 037779 46 EQARIAEEAGACAVMALE-RVP-------A----DIRAQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFVE 106 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~~ 106 (310)
++++.+.++|++.| -|. |.. + ..|+. .|......++.++++|+..++|++.....+ ...+
T Consensus 20 ~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F 98 (250)
T PLN02591 20 EALRLLDACGADVI-ELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKF 98 (250)
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHH
Confidence 67999999999987 443 211 1 11111 133333447778888877889977654443 2246
Q ss_pred HHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHH-HHHHHHHhCCCEEEEecC-CCCCchHHHHHHH
Q 037779 107 AQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLG-ESLRRIREGAAMIRTKGE-AGTGNIVEAVRHV 181 (310)
Q Consensus 107 ~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~ 181 (310)
++.+.++|+|++++++. +++ ++.+.+++++.....++..+|.+ .+++..+....+|..-+. +-||.-
T Consensus 99 ~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~------- 170 (250)
T PLN02591 99 MATIKEAGVHGLVVPDL-PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR------- 170 (250)
T ss_pred HHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC-------
Confidence 78899999999998765 444 34444555666666666555544 455555666667754322 112210
Q ss_pred HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..+. ....+.++.+++..++|| ++..||++++|++++.+.|||||+|||+|++
T Consensus 171 ----------~~~~-----------~~~~~~i~~vk~~~~~Pv--~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 171 ----------ASVS-----------GRVESLLQELKEVTDKPV--AVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred ----------cCCc-----------hhHHHHHHHHHhcCCCce--EEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0000 112456788888778999 4599999999999999999999999999987
No 83
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.34 E-value=2.6e-11 Score=109.17 Aligned_cols=184 Identities=24% Similarity=0.266 Sum_probs=109.4
Q ss_pred CCH-HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779 43 VTP-EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120 (310)
Q Consensus 43 ~~~-~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~ 120 (310)
.++ +.++.+.++|+++++..- .++.-.+.+.|+ ...+..++..+.+++..++.......++.+.+.||+.+..
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~-----~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~ 95 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALTKGIARAYGREYAGD-----IPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVGV 95 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCC-----CcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCEEEE
Confidence 454 689999999999995430 000000011111 1222222222333332222222234567788899998752
Q ss_pred c-C--CCChhHHH---HHHHh--cCCCCcEEeecCC----------HHHHH----HHHHhCCCEEEEecCCCCCchHHHH
Q 037779 121 S-E--VLTPADEE---NHINK--HNFRVPFVCGCRN----------LGESL----RRIREGAAMIRTKGEAGTGNIVEAV 178 (310)
Q Consensus 121 ~-~--~~~~~~~~---~~~~~--~~~~l~v~~~v~t----------~~ea~----~a~~~Gad~I~v~g~~~~~~~~~~~ 178 (310)
. . ..+..+.. ..+.+ +..+++++++++. .++.. .+.+.|+|||++.. ++
T Consensus 96 ~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~---~~------ 166 (235)
T cd00958 96 TVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY---TG------ 166 (235)
T ss_pred EEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC---CC------
Confidence 1 1 11112222 22221 3467888887643 34433 36788999999851 11
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC--CCH----HHHHHHHHcCCCEEEEc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV--ATP----ADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI--~t~----~di~~~~~~GadgV~VG 252 (310)
+.+.++.+.+..++||+ +.||| .|+ +++.+++++|++||.+|
T Consensus 167 ------------------------------~~~~~~~i~~~~~~pvv--~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 167 ------------------------------DAESFKEVVEGCPVPVV--IAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred ------------------------------CHHHHHHHHhcCCCCEE--EeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 23445666666678985 45777 455 44899999999999999
Q ss_pred cccccCCCHHHHHHHHHHHH
Q 037779 253 SGVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 253 sai~~~~dp~~~~~~~~~~~ 272 (310)
+.|++++||.+.+++|+..+
T Consensus 215 ~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 215 RNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred hhhhcCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 84
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.32 E-value=1.9e-10 Score=112.63 Aligned_cols=183 Identities=22% Similarity=0.283 Sum_probs=125.3
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecc----ccchHHHHHHHHcCCCeeeec
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR----IGHFVEAQILEAIGVDYVDES 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~----i~~~~~~~~~~~aGad~v~~~ 121 (310)
+.++.+.++|+++|..- .|. ...++ .+.++++++....+.++.|. ++ ...++.+.++|||+++.+
T Consensus 20 ~~~~~~~~~Gv~~ie~g--~p~-~~~~~-------~~~i~~l~~~~~~~~ii~D~kl~d~g-~~~v~~a~~aGAdgV~v~ 88 (430)
T PRK07028 20 EIAKEAVAGGADWIEAG--TPL-IKSEG-------MNAIRTLRKNFPDHTIVADMKTMDTG-AIEVEMAAKAGADIVCIL 88 (430)
T ss_pred HHHHHHHhcCCcEEEeC--CHH-HHHhh-------HHHHHHHHHHCCCCEEEEEeeeccch-HHHHHHHHHcCCCEEEEe
Confidence 56888888999998421 111 11111 66788888776666766651 12 236788999999999853
Q ss_pred CCC---ChhHHHHHHHhcCCCCcEEe---ecCC-HHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779 122 EVL---TPADEENHINKHNFRVPFVC---GCRN-LGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 122 ~~~---~~~~~~~~~~~~~~~l~v~~---~v~t-~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
... ++.+.++.++++ ++.++. +++| .+.++.+.+.|+|+++++ +.+++. ..
T Consensus 89 g~~~~~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~-------------------~~ 146 (430)
T PRK07028 89 GLADDSTIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQ-------------------ML 146 (430)
T ss_pred cCCChHHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchh-------------------hc
Confidence 221 233555666654 444443 5555 455677788999999875 333210 00
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
.....+.++.+++..++||+ +.||| +++++.+++++|++++++||+|++++||.+.++.|++.++.
T Consensus 147 -----------~~~~~~~l~~l~~~~~iPI~--a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 147 -----------GKDPLELLKEVSEEVSIPIA--VAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred -----------CCChHHHHHHHHhhCCCcEE--EECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 01235667777765678994 56999 69999999999999999999999999999999999998877
Q ss_pred C
Q 037779 275 Y 275 (310)
Q Consensus 275 ~ 275 (310)
+
T Consensus 213 ~ 213 (430)
T PRK07028 213 G 213 (430)
T ss_pred c
Confidence 4
No 85
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.31 E-value=2e-10 Score=104.27 Aligned_cols=174 Identities=16% Similarity=0.131 Sum_probs=110.3
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCC---------CChHHHHHHHhhcCcceEee----ccc-cchHHHHHH
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARM---------SDPQLIKQIKSSVTIPVMAK----ARI-GHFVEAQIL 110 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~---------~~~~~i~~i~~~~~lPv~~k----d~i-~~~~~~~~~ 110 (310)
++++.+.++ ++.+ .|| |++. +.. .|.... .-++.++++++.+++|+.+. .+. +....++.+
T Consensus 22 ~~~~~l~~~-ad~i-Elgip~sd-p~a-dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~ 97 (244)
T PRK13125 22 EFIIGLVEL-VDIL-ELGIPPKY-PKY-DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMA 97 (244)
T ss_pred HHHHHHHhh-CCEE-EECCCCCC-CCC-CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHH
Confidence 678888887 9987 677 5442 211 111000 00468889998889998542 322 222346788
Q ss_pred HHcCCCeeeecCCC-----ChhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhCCCEE--EEecCCCCCchHHHHHHHH
Q 037779 111 EAIGVDYVDESEVL-----TPADEENHINKHNFRVPFVCGCRN-LGESLRRIREGAAMI--RTKGEAGTGNIVEAVRHVR 182 (310)
Q Consensus 111 ~~aGad~v~~~~~~-----~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~Gad~I--~v~g~~~~~~~~~~~~~~~ 182 (310)
.++|+|.++.++.. ...++.+.+++++....+.+..+| .++++...+....++ ++++..+ ..+
T Consensus 98 ~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g-~~~-------- 168 (244)
T PRK13125 98 RDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATG-VPL-------- 168 (244)
T ss_pred HHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCC-CCc--------
Confidence 99999999876431 233555666666666666666666 455666666665555 4443221 111
Q ss_pred HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
. ....+.++++++.. +.|+ +++|||++++++++++++|||++++||+|++
T Consensus 169 ------------~-----------~~~~~~i~~lr~~~~~~~i--~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 ------------P-----------VSVERNIKRVRNLVGNKYL--VVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred ------------h-----------HHHHHHHHHHHHhcCCCCE--EEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 01133455555543 4687 5699999999999999999999999999997
No 86
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=99.29 E-value=8.7e-10 Score=97.06 Aligned_cols=157 Identities=11% Similarity=0.144 Sum_probs=112.6
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
+.++++.++|...+ .+ .... ..-.+.++++++... +.|-+.. +.+.++++.+.++||+++..+..
T Consensus 24 ~~~~al~~~Gi~~i-Ei-------t~~t----~~a~~~i~~l~~~~~~~~vGAGT-Vl~~~~a~~a~~aGA~FivsP~~- 89 (204)
T TIGR01182 24 PLAKALIEGGLRVL-EV-------TLRT----PVALDAIRLLRKEVPDALIGAGT-VLNPEQLRQAVDAGAQFIVSPGL- 89 (204)
T ss_pred HHHHHHHHcCCCEE-EE-------eCCC----ccHHHHHHHHHHHCCCCEEEEEe-CCCHHHHHHHHHcCCCEEECCCC-
Confidence 67999999999987 22 1111 111567788877653 3332222 22457889999999999975443
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCC-CCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEA-GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
.+++.+..++ .+++++.++.|+.|+..|.+.|+++++++... .+|
T Consensus 90 -~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG------------------------------- 135 (204)
T TIGR01182 90 -TPELAKHAQD--HGIPIIPGVATPSEIMLALELGITALKLFPAEVSGG------------------------------- 135 (204)
T ss_pred -CHHHHHHHHH--cCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCC-------------------------------
Confidence 4577777765 46899999999999999999999999998321 111
Q ss_pred ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
...++.++. ..++|+ ++.||| +++++.+++++|+.++.+||.++..+
T Consensus 136 ------~~yikal~~plp~i~~--~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 136 ------VKMLKALAGPFPQVRF--CPTGGI-NLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred ------HHHHHHHhccCCCCcE--EecCCC-CHHHHHHHHhCCCEEEEEChhhcCch
Confidence 123333433 246788 578999 59999999999999999999999744
No 87
>PRK08005 epimerase; Validated
Probab=99.28 E-value=5.9e-10 Score=98.59 Aligned_cols=181 Identities=16% Similarity=0.157 Sum_probs=124.4
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~ 120 (310)
+.++.+.++|+++++ +.+++|. . .|+ ++.++.+++.+++|+-++-.+.+.+ .++.+.++|+|.|..
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN-~-tfG-------~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~ 87 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINN-I-TFG-------MKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFI 87 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCc-c-ccC-------HHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 679999999999973 2235553 1 344 8899999999999998888876544 457888899999875
Q ss_pred c-C-CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779 121 S-E-VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 121 ~-~-~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
+ + ...+...++.+++++....+.+...|+-+...-.-.-.|+|.+. .++++|- +.
T Consensus 88 H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ------------------~f--- 146 (210)
T PRK08005 88 HAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQ------------------QF--- 146 (210)
T ss_pred cccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccc------------------ee---
Confidence 4 2 23456788888887766777777777666555444467776443 3444331 00
Q ss_pred hhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779 197 DEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 197 d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~ 268 (310)
.....+.++++++. ....+ -+.||| +.+++.++.++|||.+++||++++++|+.+..+.+
T Consensus 147 ---------~~~~~~KI~~l~~~~~~~~I--~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 147 ---------IAAMCEKVSQSREHFPAAEC--WADGGI-TLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred ---------cHHHHHHHHHHHHhcccCCE--EEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHH
Confidence 01122333333332 12244 358999 59999999999999999999999988887776655
No 88
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.28 E-value=5.7e-11 Score=111.93 Aligned_cols=153 Identities=25% Similarity=0.325 Sum_probs=106.7
Q ss_pred HHHHHHHHcCCcEEEecc-cccc--hhhhcCCCCCCCChHHHHHH----HhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVMALE-RVPA--DIRAQGGVARMSDPQLIKQI----KSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~--d~r~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+.+.|+++| ++| .||. -.+...|+..+++++.+.++ ++.+++||.+|.+.|+..
T Consensus 81 ~aa~~~~~~g~d~I-dlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~------------- 146 (321)
T PRK10415 81 DAARINVESGAQII-DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP------------- 146 (321)
T ss_pred HHHHHHHHCCCCEE-EEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-------------
Confidence 34676778899998 999 5553 33444588889999987655 455678999998766310
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 198 (310)
+..+.. +-++.+.+.|++.+.+++...... +
T Consensus 147 ------~~~~~~-------------------~~a~~le~~G~d~i~vh~rt~~~~-------------------~----- 177 (321)
T PRK10415 147 ------EHRNCV-------------------EIAQLAEDCGIQALTIHGRTRACL-------------------F----- 177 (321)
T ss_pred ------CcchHH-------------------HHHHHHHHhCCCEEEEecCccccc-------------------c-----
Confidence 001111 112344567888888875421110 0
Q ss_pred HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHH
Q 037779 199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
.-..+++.++.+++..++|| |++|||.|++++.++++ .|+|+|++|++++..++.+...+.+.
T Consensus 178 ------~G~a~~~~i~~ik~~~~iPV--I~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~ 241 (321)
T PRK10415 178 ------NGEAEYDSIRAVKQKVSIPV--IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 (321)
T ss_pred ------CCCcChHHHHHHHHhcCCcE--EEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHH
Confidence 01236888999988888999 67999999999999997 69999999999999888766655443
No 89
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.28 E-value=2.1e-11 Score=114.28 Aligned_cols=154 Identities=27% Similarity=0.427 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHH----HHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQ----IKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~----i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+.+.|+++| +|| |.++-.+...|+.++++++.+.+ +++.+++||.+|.+++..+
T Consensus 70 ~aa~~~~~~~~~~I-DlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~------------- 135 (309)
T PF01207_consen 70 EAAEIVAELGFDGI-DLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDD------------- 135 (309)
T ss_dssp HHHHHHCCTT-SEE-EEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--------------
T ss_pred HHHHhhhccCCcEE-eccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccccc-------------
Confidence 44666666799999 999 66666655568899999998665 4566789999999987311
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 198 (310)
+..+..+ -+....+.|++.+.+|++..... +
T Consensus 136 ------~~~~~~~-------------------~~~~l~~~G~~~i~vH~Rt~~q~-------------------~----- 166 (309)
T PF01207_consen 136 ------SPEETIE-------------------FARILEDAGVSAITVHGRTRKQR-------------------Y----- 166 (309)
T ss_dssp -------CHHHHH-------------------HHHHHHHTT--EEEEECS-TTCC-------------------C-----
T ss_pred ------chhHHHH-------------------HHHHhhhcccceEEEecCchhhc-------------------C-----
Confidence 1222222 23355578999999997622110 0
Q ss_pred HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHHHHHHH
Q 037779 199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
....+|+.++.+++..++|| |++|||.|++++.++++. |+||||+|++.+..++.+.....+..
T Consensus 167 ------~~~a~w~~i~~i~~~~~ipv--i~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~ 231 (309)
T PF01207_consen 167 ------KGPADWEAIAEIKEALPIPV--IANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKE 231 (309)
T ss_dssp ------TS---HHHHHHCHHC-TSEE--EEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHH
T ss_pred ------CcccchHHHHHHhhccccee--EEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhcc
Confidence 11457999999999888999 789999999999999975 99999999999999988764333333
No 90
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.26 E-value=3.1e-10 Score=102.80 Aligned_cols=180 Identities=24% Similarity=0.333 Sum_probs=121.8
Q ss_pred HHHHHHHHcCCcEEEecc-cc-------cc----hhhhcC-CCCCCCChHHHHHHHhh-cCcceEeecccc------chH
Q 037779 46 EQARIAEEAGACAVMALE-RV-------PA----DIRAQG-GVARMSDPQLIKQIKSS-VTIPVMAKARIG------HFV 105 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~-------~~----d~r~~~-G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~------~~~ 105 (310)
+.++.+.++|++.| -|. |. |+ ..|+.. |......++.++++++. .++|+......+ ...
T Consensus 35 e~i~~L~~~GaD~i-ELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~ 113 (265)
T COG0159 35 EIIKTLVEAGADIL-ELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEK 113 (265)
T ss_pred HHHHHHHhCCCCEE-EecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHH
Confidence 77999999999987 443 11 11 112222 44455667788899855 789998865443 224
Q ss_pred HHHHHHHcCCCeeeecCCCC--hhHHHHHHHhcCCCCcEEeecCCHHHHHHHH-HhCCCEEEEecCC-CCCchHHHHHHH
Q 037779 106 EAQILEAIGVDYVDESEVLT--PADEENHINKHNFRVPFVCGCRNLGESLRRI-REGAAMIRTKGEA-GTGNIVEAVRHV 181 (310)
Q Consensus 106 ~~~~~~~aGad~v~~~~~~~--~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~-~~Gad~I~v~g~~-~~~~~~~~~~~~ 181 (310)
+++.+.++|+|++++++... ..++...+++++.....++..+|.++..+.+ +..-.++...+.. -||.
T Consensus 114 F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~-------- 185 (265)
T COG0159 114 FLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGA-------- 185 (265)
T ss_pred HHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCC--------
Confidence 67899999999999776521 2245556666777877778777776655444 4333455433221 1221
Q ss_pred HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+++ ......++++++++..++|+ .+..||+++++++++.+. ||||+|||+|++
T Consensus 186 --------------~~~------~~~~~~~~v~~vr~~~~~Pv--~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 186 --------------RNP------VSADVKELVKRVRKYTDVPV--LVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred --------------Ccc------cchhHHHHHHHHHHhcCCCe--EEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 000 00113678888888889999 569999999999999999 999999999988
No 91
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.25 E-value=4.2e-10 Score=102.80 Aligned_cols=180 Identities=26% Similarity=0.299 Sum_probs=117.6
Q ss_pred HHHHHHHHcCCcEEEecc-ccc-------chh----hhc-CCCCCCCChHHHHHHH-hhcCcceEeecccc------chH
Q 037779 46 EQARIAEEAGACAVMALE-RVP-------ADI----RAQ-GGVARMSDPQLIKQIK-SSVTIPVMAKARIG------HFV 105 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~-------~d~----r~~-~G~~~~~~~~~i~~i~-~~~~lPv~~kd~i~------~~~ 105 (310)
+.++.+.++|++.| -+. |.. +-. ++. +|......++.++++| +..++|+++....+ ...
T Consensus 30 ~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~ 108 (258)
T PRK13111 30 EIIKALVEAGADII-ELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVER 108 (258)
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHH
Confidence 67999999999987 443 221 111 111 1332223367778888 55789987654333 224
Q ss_pred HHHHHHHcCCCeeeecCCCChhHH---HHHHHhcCCCCcEEeecCCH-HHHHHHHHhCCCEEEEecCC-CCCchHHHHHH
Q 037779 106 EAQILEAIGVDYVDESEVLTPADE---ENHINKHNFRVPFVCGCRNL-GESLRRIREGAAMIRTKGEA-GTGNIVEAVRH 180 (310)
Q Consensus 106 ~~~~~~~aGad~v~~~~~~~~~~~---~~~~~~~~~~l~v~~~v~t~-~ea~~a~~~Gad~I~v~g~~-~~~~~~~~~~~ 180 (310)
.++.+.++|+|++++++. ++++. .+.+++++.....++..+|. +.++...+....+|..-+.. .||.
T Consensus 109 f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~------- 180 (258)
T PRK13111 109 FAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA------- 180 (258)
T ss_pred HHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCc-------
Confidence 678899999999998765 45543 44445566666666666664 45666667777777543221 2331
Q ss_pred HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+. ......+.++.+++..++|+ ++++||++++++.++.+. ||||+|||+|++.
T Consensus 181 -----------~~~----------~~~~~~~~i~~vk~~~~~pv--~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~ 234 (258)
T PRK13111 181 -----------RSA----------DAADLAELVARLKAHTDLPV--AVGFGISTPEQAAAIAAV-ADGVIVGSALVKI 234 (258)
T ss_pred -----------ccC----------CCccHHHHHHHHHhcCCCcE--EEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence 000 00123568888888778999 569999999999999986 9999999999874
No 92
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=99.25 E-value=1.5e-09 Score=96.97 Aligned_cols=185 Identities=15% Similarity=0.040 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~ 120 (310)
+..++++++|+++++ +.+++|. . .|+ +..++.+++ ++|+-++-.+.+. ..++.+.++|||.|..
T Consensus 29 ~el~~l~~~g~d~lHiDVMDG~FVPN-i-tfG-------p~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIADGQFSPF-F-TVG-------AIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVTL 97 (228)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCc-c-ccC-------HHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 689999999999973 2235553 2 343 788999973 7898888777654 3457888999999875
Q ss_pred c-C-CCChhHHHHHHHhcCC--CCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCc--hHHHHHHHHHhhcceeccc
Q 037779 121 S-E-VLTPADEENHINKHNF--RVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGN--IVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 121 ~-~-~~~~~~~~~~~~~~~~--~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~--~~~~~~~~~~~~~~~~~l~ 192 (310)
+ + ...+.+.++.+++.+. ...+.....|+-+...-+-.-.|+|.+. .|+++|- +..+++.+
T Consensus 98 H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI----------- 166 (228)
T PRK08091 98 QVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRV----------- 166 (228)
T ss_pred cccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHH-----------
Confidence 4 2 2345677788888776 4556666666655554444457876432 3444331 11111111
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA 271 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~ 271 (310)
.++.+.+++. .++.+ -+.||| +.+++.++.++|||.+++||++++.+|+.+.++.++..
T Consensus 167 -----------------~~lr~~~~~~~~~~~I--eVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~ 226 (228)
T PRK08091 167 -----------------IQVENRLGNRRVEKLI--SIDGSM-TLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSS 226 (228)
T ss_pred -----------------HHHHHHHHhcCCCceE--EEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHh
Confidence 1222222222 12334 458999 59999999999999999999999988988888887764
Q ss_pred H
Q 037779 272 V 272 (310)
Q Consensus 272 ~ 272 (310)
+
T Consensus 227 ~ 227 (228)
T PRK08091 227 L 227 (228)
T ss_pred h
Confidence 3
No 93
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.25 E-value=2.1e-10 Score=107.64 Aligned_cols=150 Identities=25% Similarity=0.321 Sum_probs=105.6
Q ss_pred HHHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHHH----Hhhc--CcceEeeccccchHHHHHHHHcCCC
Q 037779 46 EQARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQI----KSSV--TIPVMAKARIGHFVEAQILEAIGVD 116 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~i----~~~~--~lPv~~kd~i~~~~~~~~~~~aGad 116 (310)
+.|+.+.+.|+++| ++| |.++-.+..+|+.++++++.+.+| ++.+ ++||.+|.++++.
T Consensus 79 ~aA~~~~~~g~d~I-diN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------------ 145 (312)
T PRK10550 79 ENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------------ 145 (312)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------------
Confidence 45778888999998 899 555444444577788888876655 5555 4999999887621
Q ss_pred eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779 117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
...+.. +-+..+.+.|+|++.+++..... .+.
T Consensus 146 --------~~~~~~-------------------~~a~~l~~~Gvd~i~Vh~Rt~~~-------------------~y~-- 177 (312)
T PRK10550 146 --------SGERKF-------------------EIADAVQQAGATELVVHGRTKED-------------------GYR-- 177 (312)
T ss_pred --------CchHHH-------------------HHHHHHHhcCCCEEEECCCCCcc-------------------CCC--
Confidence 001111 12334456788888888542110 000
Q ss_pred hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779 197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~ 266 (310)
....+|+.++.+++..++|| |++|||.|++++.++++ .|||+|++|++++..++.+..++
T Consensus 178 --------g~~~~~~~i~~ik~~~~iPV--i~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~ 238 (312)
T PRK10550 178 --------AEHINWQAIGEIRQRLTIPV--IANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVK 238 (312)
T ss_pred --------CCcccHHHHHHHHhhcCCcE--EEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhh
Confidence 01125788999999888999 67999999999999995 79999999999999888776543
No 94
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.24 E-value=8.4e-10 Score=106.17 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCeeeec--C--CCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCC--CCCchHH
Q 037779 105 VEAQILEAIGVDYVDES--E--VLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEA--GTGNIVE 176 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~--~--~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~~~ 176 (310)
+.++.+.++|+|.|.+. + .....+.++.++++.+++.+++ ++.|.++++.+.++|+|+|.+. |+. +++.
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr--- 232 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR--- 232 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcce---
Confidence 57888999999998732 2 2334466777777667777766 7999999999999999999874 221 2211
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCC-CcHHHH---HHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLV---MQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~---~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
.+. +.+ +....+ ..+.+..++|| ||+|||.++.|+.+++.+||++|++|
T Consensus 233 -------------~~~------------g~g~p~ltai~~v~~~~~~~~vpV--IAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 233 -------------IVA------------GVGVPQITAICDVYEVCKNTNICI--IADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred -------------eec------------CCCCChHHHHHHHHHHHhhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 110 111 123333 33333346898 78999999999999999999999999
Q ss_pred cccccCC
Q 037779 253 SGVFKSG 259 (310)
Q Consensus 253 sai~~~~ 259 (310)
++|..++
T Consensus 286 s~~agt~ 292 (404)
T PRK06843 286 NLFAGTK 292 (404)
T ss_pred ceeeeee
Confidence 9999954
No 95
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.24 E-value=6.1e-10 Score=100.07 Aligned_cols=186 Identities=14% Similarity=0.174 Sum_probs=119.7
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccch-HHHHHHHHcCCCeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHF-VEAQILEAIGVDYVD 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~-~~~~~~~~aGad~v~ 119 (310)
+.++.+.++|+++++ +.+++|. . .|+ ++.++.+++.+ ++|+-++..+.+. ..++.+.++|||.+.
T Consensus 23 ~~~~~l~~~~~~~~H~DimDg~fvpn-~-~~G-------~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 23 DEAQDVLSGGADWLHVDVMDGHFVPN-L-SFG-------PPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFT 93 (228)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCC-c-CcC-------HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEE
Confidence 779999999999973 2224442 1 233 78999999887 8999888876543 345788889999987
Q ss_pred ecCC--CC-hhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHH-hCCCEE---EEecCCCCCchHHHHHHHHHhhcceecc
Q 037779 120 ESEV--LT-PADEENHINKHNFRVPFVCGCRN-LGESLRRIR-EGAAMI---RTKGEAGTGNIVEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 120 ~~~~--~~-~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~-~Gad~I---~v~g~~~~~~~~~~~~~~~~~~~~~~~l 191 (310)
.+.. .. +...++.+++.+..+.+.+...| .+++...++ ...|+| .++ +++++-
T Consensus 94 vH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~-pG~~gq------------------ 154 (228)
T PTZ00170 94 FHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE-PGFGGQ------------------ 154 (228)
T ss_pred EeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc-cCCCCc------------------
Confidence 5422 12 44566666665433334334433 334443332 234655 233 222210
Q ss_pred cccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 192 RNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
.. .....+.++.+++. ....+ .+.||| +++++..+.++|+|.+++||+|++++||.+.++++++
T Consensus 155 ~~------------~~~~~~ki~~~~~~~~~~~I--~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 155 SF------------MHDMMPKVRELRKRYPHLNI--QVDGGI-NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred Ee------------cHHHHHHHHHHHHhcccCeE--EECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 00 01123334444443 12344 468999 5999999999999999999999999999999999998
Q ss_pred HHHc
Q 037779 271 AVTN 274 (310)
Q Consensus 271 ~~~~ 274 (310)
.+++
T Consensus 220 ~~~~ 223 (228)
T PTZ00170 220 SVQK 223 (228)
T ss_pred HHHH
Confidence 8764
No 96
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=99.24 E-value=2.7e-09 Score=95.66 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=126.0
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~ 120 (310)
+.++.+.+ |+++++ +.+++|. . .|+ +..++.+|+.+++|+-+.-.+.+.+ .++.+.++|||.|..
T Consensus 19 ~el~~l~~-g~d~lH~DiMDG~FVPN-~-tfg-------~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 19 EQIEFLNS-KADYFHIDIMDGHFVPN-L-TLS-------PFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITL 88 (229)
T ss_pred HHHHHHHh-CCCEEEEecccCccCCC-c-ccC-------HHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 56788877 899973 2335553 2 343 7899999998999998888876543 457888899999875
Q ss_pred c-CC--CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhhcceecccc
Q 037779 121 S-EV--LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 121 ~-~~--~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~~~~~~l~~ 193 (310)
+ +. ..+...++.+++++....+.+...|+-+...-+-.-.|+|.+. .++++| .+.++++.+
T Consensus 89 H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI------------ 156 (229)
T PRK09722 89 HPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKI------------ 156 (229)
T ss_pred CccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHH------------
Confidence 4 32 2466778888887776777777777766655544467876432 344433 111221111
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc-cccc-CCCHHHHHHHHHHH
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS-GVFK-SGDPVRRARAIVQA 271 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs-ai~~-~~dp~~~~~~~~~~ 271 (310)
.++.+.+.+ ....+.+-+.||| +.+++.++.++|||.+++|| ++++ .+|+.+.++.+++.
T Consensus 157 ----------------~~lr~~~~~-~~~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~ 218 (229)
T PRK09722 157 ----------------AELKALRER-NGLEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQ 218 (229)
T ss_pred ----------------HHHHHHHHh-cCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHH
Confidence 122222222 2223323568999 59999999999999999995 5987 57888888888876
Q ss_pred HHc
Q 037779 272 VTN 274 (310)
Q Consensus 272 ~~~ 274 (310)
+++
T Consensus 219 ~~~ 221 (229)
T PRK09722 219 IEA 221 (229)
T ss_pred HHH
Confidence 553
No 97
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.9e-09 Score=94.48 Aligned_cols=162 Identities=18% Similarity=0.258 Sum_probs=113.4
Q ss_pred hHHHHHHHhhc-CcceEeeccccc--hHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cCCCCcEEee---cCCHHHHH
Q 037779 81 PQLIKQIKSSV-TIPVMAKARIGH--FVEAQILEAIGVDYVDESEVLTPADEENHINK-HNFRVPFVCG---CRNLGESL 153 (310)
Q Consensus 81 ~~~i~~i~~~~-~lPv~~kd~i~~--~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~~~l~v~~~---v~t~~ea~ 153 (310)
.+.++.+|+.. +.++++....-+ .-+++.++++|||.+.+.-.-+...+.+.++. +..+..+.++ +.|+++..
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~ 123 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA 123 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH
Confidence 57888888875 677777544421 24778999999999874322233333333333 3355655554 56778777
Q ss_pred HHHH-hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC--CCEEEEccC
Q 037779 154 RRIR-EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR--LPVVHFAAG 230 (310)
Q Consensus 154 ~a~~-~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~--iPVv~ia~G 230 (310)
+=++ +|+|++.+|.. ++... .+....++.+..+++..+ .+| -++|
T Consensus 124 ~~l~~~gvd~~~~H~g--------------------~D~q~----------~G~~~~~~~l~~ik~~~~~g~~v--AVaG 171 (217)
T COG0269 124 KWLKELGVDQVILHRG--------------------RDAQA----------AGKSWGEDDLEKIKKLSDLGAKV--AVAG 171 (217)
T ss_pred HHHHHhCCCEEEEEec--------------------ccHhh----------cCCCccHHHHHHHHHhhccCceE--EEec
Confidence 6666 99999999821 01110 122334667777777544 455 4589
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275 (310)
Q Consensus 231 GI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~ 275 (310)
|| +++++..+...|++.|+||++|+++.||.+.+++|++.+..+
T Consensus 172 GI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~~ 215 (217)
T COG0269 172 GI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDKI 215 (217)
T ss_pred CC-CHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhcc
Confidence 99 699999999999999999999999999999999999998754
No 98
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.22 E-value=8.3e-10 Score=103.18 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=123.8
Q ss_pred CccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccc--cc---hHHHHH
Q 037779 37 GVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARI--GH---FVEAQI 109 (310)
Q Consensus 37 g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i--~~---~~~~~~ 109 (310)
|.|..+.+ +++|.+..++|.-.+.-+...+.+. .-+.|+++++. ++.|+-++... .+ .+.++.
T Consensus 8 gpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~----------l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 8 GPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQ----------VKALLEETAELLGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHH----------HHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHH
Confidence 66777777 8999999999988763221111110 02355667774 68898887532 11 246678
Q ss_pred HHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779 110 LEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR 189 (310)
Q Consensus 110 ~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~ 189 (310)
+.+.++..|..... .|.. .+.++. .|+.++..+.|+.+++++.+.|+|.+.+.|...+||.-
T Consensus 78 i~e~~v~~V~~~~G-~P~~-~~~lk~--~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G-------------- 139 (320)
T cd04743 78 VRAIKPTFALIAGG-RPDQ-ARALEA--IGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVG-------------- 139 (320)
T ss_pred HHhcCCcEEEEcCC-ChHH-HHHHHH--CCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCC--------------
Confidence 88899999875433 3444 455654 57899999999999999999999999998886666521
Q ss_pred cccccCchhHHhhhccCCCcHHHHHHHHh------cCCCCEEEEccCCCCCHHHHHHHHHcCC--------CEEEEcccc
Q 037779 190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQ------LGRLPVVHFAAGGVATPADAAMMMQLGC--------DGVFVGSGV 255 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~l~~~i~~------~~~iPVv~ia~GGI~t~~di~~~~~~Ga--------dgV~VGsai 255 (310)
.++++. + -.+++..+.. ..++|| |++|||.+...+..++.+|| +||.+||+|
T Consensus 140 ~~~t~~----------L--~~~v~~~l~~~~~~~~~~~iPV--iAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrF 205 (320)
T cd04743 140 PRSSFV----------L--WESAIDALLAANGPDKAGKIHL--LFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAY 205 (320)
T ss_pred CCCchh----------h--HHHHHHHHHHhhcccccCCccE--EEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHH
Confidence 011110 0 0112222211 126899 78999999999999999988 899999999
Q ss_pred ccCCC
Q 037779 256 FKSGD 260 (310)
Q Consensus 256 ~~~~d 260 (310)
.-++.
T Consensus 206 l~t~E 210 (320)
T cd04743 206 LFTEE 210 (320)
T ss_pred hcchh
Confidence 98654
No 99
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.22 E-value=3.3e-10 Score=106.51 Aligned_cols=159 Identities=21% Similarity=0.244 Sum_probs=106.1
Q ss_pred HHHHHHHHcCCcEEEecc-ccc--chhhhcCCCCCCCChHHHHHH----HhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVMALE-RVP--ADIRAQGGVARMSDPQLIKQI----KSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~--~d~r~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+.+.|+++| +|| .|| +-.+...|+.++.+++.+.++ ++.+++||++|.+++..+
T Consensus 71 ~aA~~~~~~g~d~I-DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------------- 136 (318)
T TIGR00742 71 KCAKIAEKRGYDEI-NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------------- 136 (318)
T ss_pred HHHHHHHhCCCCEE-EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC-------------
Confidence 55777888899998 999 444 333333488888898876654 556689999999886311
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC--CCchHHHHHHHHHhhcceecccccCc
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG--TGNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
..+..+.. +-++.+.+.|++.+.++|+.. .+. ....
T Consensus 137 ----~~~~~~~~-------------------~~~~~l~~~G~~~itvHgRt~~~qg~------------------sg~~- 174 (318)
T TIGR00742 137 ----LDSYEFLC-------------------DFVEIVSGKGCQNFIVHARKAWLSGL------------------SPKE- 174 (318)
T ss_pred ----cchHHHHH-------------------HHHHHHHHcCCCEEEEeCCchhhcCC------------------Cccc-
Confidence 00111111 123344567889998886521 100 0000
Q ss_pred hhHHhhhccC-CCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779 197 DEVFTFAKNI-AAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 197 d~~~~~~~~~-~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
+ +.. ...|+.+..+++.. ++|| |++|||.|++|+.+++. |||||++|++++..++.+..++.+.
T Consensus 175 ~------~~~~~~~~~~i~~vk~~~~~ipV--i~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l 240 (318)
T TIGR00742 175 N------REIPPLRYERVYQLKKDFPHLTI--EINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREI 240 (318)
T ss_pred c------ccCCchhHHHHHHHHHhCCCCcE--EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHh
Confidence 0 001 12577788888765 7999 67999999999999886 9999999999999888776665543
No 100
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.21 E-value=8.6e-10 Score=103.57 Aligned_cols=176 Identities=18% Similarity=0.206 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHH-HHhhcCcceEeecccc----chHHHHHHHHcCC-
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQ-IKSSVTIPVMAKARIG----HFVEAQILEAIGV- 115 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~-i~~~~~lPv~~kd~i~----~~~~~~~~~~aGa- 115 (310)
..+.++|+.+.+.|.-.+ .+ | +. ++...+ +++.-...++++..++ ..+++..+.++|+
T Consensus 48 ~iN~~LA~~a~~~G~~~~-~~-------k-~~-------~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~ 111 (326)
T PRK05458 48 IIDEKIAEWLAENGYFYI-MH-------R-FD-------PEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLT 111 (326)
T ss_pred hhHHHHHHHHHHcCCEEE-Ee-------c-CC-------HHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCC
Confidence 445688999999888765 22 2 11 333222 2322222334544443 2367778888855
Q ss_pred -Ceeeec----CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779 116 -DYVDES----EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR 189 (310)
Q Consensus 116 -d~v~~~----~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~ 189 (310)
|.|.++ +.....++++.++++.+++++++ ++.|.++++.+.++|+|++.+.+..++..
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~---------------- 175 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVC---------------- 175 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCccc----------------
Confidence 998742 22234567778877777788999 59999999999999999998763222110
Q ss_pred cccccCchhHHhhhccCCCcHH--HHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 190 VLRNMDDDEVFTFAKNIAAPYD--LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~--l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
...... ..-.++|. .+..+.+..++|| |++|||.++.|+.+++.+||++|++|++|.+..
T Consensus 176 -~t~~~~-------g~~~~~w~l~ai~~~~~~~~ipV--IAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~ 237 (326)
T PRK05458 176 -ITKIKT-------GFGTGGWQLAALRWCAKAARKPI--IADGGIRTHGDIAKSIRFGATMVMIGSLFAGHE 237 (326)
T ss_pred -cccccc-------CCCCCccHHHHHHHHHHHcCCCE--EEeCCCCCHHHHHHHHHhCCCEEEechhhcCCc
Confidence 000000 00122344 3666666667899 789999999999999999999999999999654
No 101
>PRK14057 epimerase; Provisional
Probab=99.21 E-value=4.3e-09 Score=95.23 Aligned_cols=187 Identities=13% Similarity=0.079 Sum_probs=123.3
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~ 120 (310)
+.++.++++|+++++ +.+++|. . .|+ ++.++.+++ ++|+-++-.+.+.+ .++.+.++|||.|..
T Consensus 36 ~el~~l~~~g~d~lHiDVMDG~FVPN-i-tfG-------p~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~aGad~It~ 104 (254)
T PRK14057 36 RYLQQLEALNQPLLHLDLMDGQFCPQ-F-TVG-------PWAVGQLPQ--TFIKDVHLMVADQWTAAQACVKAGAHCITL 104 (254)
T ss_pred HHHHHHHHCCCCEEEEeccCCccCCc-c-ccC-------HHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHHhCCCEEEE
Confidence 679999999999973 2335553 2 343 788999976 68888887776543 457888999999874
Q ss_pred c-C-CCChhHHHHHHHhcCC---------CCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhh
Q 037779 121 S-E-VLTPADEENHINKHNF---------RVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVM 185 (310)
Q Consensus 121 ~-~-~~~~~~~~~~~~~~~~---------~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~ 185 (310)
+ + ...+...++.+++++. ...+.....|+-+...-.-.-.|+|.+. .|+++| .+.++++.+
T Consensus 105 H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI---- 180 (254)
T PRK14057 105 QAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERV---- 180 (254)
T ss_pred eeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHH----
Confidence 4 2 2345677778877654 2455556667665555444457876432 344433 111121111
Q ss_pred cceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 037779 186 GDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264 (310)
Q Consensus 186 ~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~ 264 (310)
.++.+.+.+. .++.+ -+.||| +.+++.++.++|||.+++||++++.+|+.+.
T Consensus 181 ------------------------~~lr~~~~~~~~~~~I--eVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d~~~~ 233 (254)
T PRK14057 181 ------------------------AQLLCLLGDKREGKII--VIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDRLVEN 233 (254)
T ss_pred ------------------------HHHHHHHHhcCCCceE--EEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHH
Confidence 1222222232 12334 468999 5999999999999999999999998899888
Q ss_pred HHHHHHHHHc
Q 037779 265 ARAIVQAVTN 274 (310)
Q Consensus 265 ~~~~~~~~~~ 274 (310)
++.+++.+..
T Consensus 234 i~~l~~~~~~ 243 (254)
T PRK14057 234 TRSWRAMFKV 243 (254)
T ss_pred HHHHHHHHhh
Confidence 8888766543
No 102
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.20 E-value=1.1e-09 Score=103.29 Aligned_cols=184 Identities=18% Similarity=0.218 Sum_probs=113.8
Q ss_pred CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCC
Q 037779 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVD 116 (310)
Q Consensus 37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad 116 (310)
+.|..+.+++++.++.++|.-++...+ .+.+. ..+.+++++....+...+...-...+.++.+.++|++
T Consensus 40 apM~~vt~~~ma~ava~~GglGvi~~~-~~~~~----------~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~ 108 (325)
T cd00381 40 APMDTVTESEMAIAMARLGGIGVIHRN-MSIEE----------QAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVD 108 (325)
T ss_pred cCCCcCCcHHHHHHHHHCCCEEEEeCC-CCHHH----------HHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCC
Confidence 445567778999999999987762211 11000 0223334432211111111111123567788889999
Q ss_pred eeeec--CC--CChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCC--CCCchHHHHHHHHHhhcce
Q 037779 117 YVDES--EV--LTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEA--GTGNIVEAVRHVRSVMGDI 188 (310)
Q Consensus 117 ~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~~~~~~~~~~~~~~~ 188 (310)
.|.++ .. ....+.++.++++.+++++++ .+.|.++++.+.+.|+|+|.+. ++. +++.
T Consensus 109 ~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~--------------- 173 (325)
T cd00381 109 VIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTR--------------- 173 (325)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccc---------------
Confidence 98632 22 123456666766555677776 6899999999999999999985 221 1110
Q ss_pred ecccccCchhHHhhhccCCCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
..... -.+.+..+..+.+. .++|| |++|||.++.++.+++++||++|++||.|..++.
T Consensus 174 -~~~g~-----------g~p~~~~i~~v~~~~~~~~vpV--IA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 174 -IVTGV-----------GVPQATAVADVAAAARDYGVPV--IADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 234 (325)
T ss_pred -eeCCC-----------CCCHHHHHHHHHHHHhhcCCcE--EecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence 00000 01234444444443 25899 7899999999999999999999999999998653
No 103
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.19 E-value=5e-10 Score=105.94 Aligned_cols=197 Identities=24% Similarity=0.321 Sum_probs=135.0
Q ss_pred CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc---------------
Q 037779 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI--------------- 101 (310)
Q Consensus 37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i--------------- 101 (310)
|-|-....+++|.+..++|.-++.-.+..+.+ ..-+.+++++..++.|...+.|.
T Consensus 20 ~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e----------~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~ 89 (336)
T COG2070 20 GGMAGVSTPELAAAVSNAGGLGIIASGGLPAE----------QLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARR 89 (336)
T ss_pred CCccccCcHHHHHHHhccCCccccccccCCHH----------HHHHHHHHHHHhcCCcchhcccccccccchhheecccc
Confidence 44444777999999999998875222111111 11456778888887773322221
Q ss_pred c-chHHHHHHHH-cCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779 102 G-HFVEAQILEA-IGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR 179 (310)
Q Consensus 102 ~-~~~~~~~~~~-aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~ 179 (310)
. ..+..+.+.. +|...+..+...++...++.++. .+..++..+.+..+++++.+.|+|.+...|...+||.
T Consensus 90 ~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~--~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~----- 162 (336)
T COG2070 90 NAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA--AGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHR----- 162 (336)
T ss_pred cchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH--cCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcC-----
Confidence 1 1123344444 48888765555567888888876 5688999999999999999999999988877555541
Q ss_pred HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.. .. .......|++++.+..+ +|| |++|||.+.+++..++.+||++|.+||+|..+
T Consensus 163 ------------g~-~~--------~~~~t~~Lv~ev~~~~~~iPV--iAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t 219 (336)
T COG2070 163 ------------GG-VD--------LEVSTFALVPEVVDAVDGIPV--IAAGGIADGRGIAAALALGADGVQMGTRFLAT 219 (336)
T ss_pred ------------CC-CC--------CCccHHHHHHHHHHHhcCCCE--EEecCccChHHHHHHHHhccHHHHhhhhhhcc
Confidence 00 00 01224778899988878 999 78999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHc
Q 037779 259 GDPVRRARAIVQAVTN 274 (310)
Q Consensus 259 ~dp~~~~~~~~~~~~~ 274 (310)
..- .....+++.+.+
T Consensus 220 ~Ea-~a~~~~K~~l~~ 234 (336)
T COG2070 220 KEA-DASDAYKQALLQ 234 (336)
T ss_pred ccc-CCCHHHHHHHhc
Confidence 531 112444444443
No 104
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.2e-10 Score=103.05 Aligned_cols=171 Identities=18% Similarity=0.323 Sum_probs=119.2
Q ss_pred ccceeeecCCccccCCCH----HHHHHHHHcCCcEEEecc-cccchhhhc--CCCCCCCChHHHHHH----HhhcCcceE
Q 037779 28 VGLAQMLRGGVIMDVVTP----EQARIAEEAGACAVMALE-RVPADIRAQ--GGVARMSDPQLIKQI----KSSVTIPVM 96 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~~----~~a~~~~~~Ga~~I~~l~-~~~~d~r~~--~G~~~~~~~~~i~~i----~~~~~lPv~ 96 (310)
.|+++-+.+ .|+ +.|+..... +|+| ++| .||.-.... .|+.++.+++++.++ ++.++.||.
T Consensus 74 ~PLIvQf~~------ndp~~ll~Aa~lv~~y-~D~i-dlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs 145 (358)
T KOG2335|consen 74 RPLIVQFGG------NDPENLLKAARLVQPY-CDGI-DLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVS 145 (358)
T ss_pred CceEEEEcC------CCHHHHHHHHHHhhhh-cCcc-cccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeE
Confidence 566666666 555 345555554 5998 999 666533222 288899999987755 555689999
Q ss_pred eeccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHH
Q 037779 97 AKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVE 176 (310)
Q Consensus 97 ~kd~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~ 176 (310)
+|.+|+.. .. +|.+.+....++|++.+.|||+...
T Consensus 146 ~KIRI~~d---------------------~~-------------------kTvd~ak~~e~aG~~~ltVHGRtr~----- 180 (358)
T KOG2335|consen 146 VKIRIFVD---------------------LE-------------------KTVDYAKMLEDAGVSLLTVHGRTRE----- 180 (358)
T ss_pred EEEEecCc---------------------HH-------------------HHHHHHHHHHhCCCcEEEEecccHH-----
Confidence 99988620 11 2445566777889999999976221
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSG 254 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsa 254 (310)
.... +....+|+.++.+++..+ +|| ||+|+|.+++++.++++ .|+||||+|++
T Consensus 181 --------------~kg~---------~~~pad~~~i~~v~~~~~~ipv--iaNGnI~~~~d~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 181 --------------QKGL---------KTGPADWEAIKAVRENVPDIPV--IANGNILSLEDVERCLKYTGADGVMSARG 235 (358)
T ss_pred --------------hcCC---------CCCCcCHHHHHHHHHhCcCCcE--EeeCCcCcHHHHHHHHHHhCCceEEecch
Confidence 1111 012347899999998754 888 78999999999999998 89999999999
Q ss_pred cccCCCHH----------HHHHHHHHHHHcCC
Q 037779 255 VFKSGDPV----------RRARAIVQAVTNYS 276 (310)
Q Consensus 255 i~~~~dp~----------~~~~~~~~~~~~~~ 276 (310)
++.++..+ ..++++.....++.
T Consensus 236 lL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~ 267 (358)
T KOG2335|consen 236 LLYNPALFLTAGYGPTPWGCVEEYLDIAREFG 267 (358)
T ss_pred hhcCchhhccCCCCCCHHHHHHHHHHHHHHcC
Confidence 99865443 45555555555544
No 105
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.18 E-value=1.2e-09 Score=99.11 Aligned_cols=178 Identities=22% Similarity=0.257 Sum_probs=113.0
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhh------------hc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chH
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIR------------AQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFV 105 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r------------~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~ 105 (310)
+.++.++++|++++ -++ |.. |+- +. .|......++.++++++.+++|+......+ ...
T Consensus 18 ~~~~~l~~~Gad~i-el~iPfs-dPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~ 95 (242)
T cd04724 18 EILKALVEAGADII-ELGIPFS-DPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLER 95 (242)
T ss_pred HHHHHHHHCCCCEE-EECCCCC-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHH
Confidence 67999999999998 343 110 110 00 011111336788889988899976643332 134
Q ss_pred HHHHHHHcCCCeeeecCCCChhH---HHHHHHhcCCCCcEEeecCCHH-HHHHHHHhCCCEEEEecC-CCCCchHHHHHH
Q 037779 106 EAQILEAIGVDYVDESEVLTPAD---EENHINKHNFRVPFVCGCRNLG-ESLRRIREGAAMIRTKGE-AGTGNIVEAVRH 180 (310)
Q Consensus 106 ~~~~~~~aGad~v~~~~~~~~~~---~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~ 180 (310)
.++.+.++|+++++.++. ++++ +.+.+++++....+++...|.. .++...+...+++.+.+. ..++.-
T Consensus 96 fi~~~~~aG~~giiipDl-~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~------ 168 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDL-PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGAR------ 168 (242)
T ss_pred HHHHHHHCCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCc------
Confidence 578889999999987654 3343 4455555666655656666644 455555545666543211 111110
Q ss_pred HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..+ .....+.++.+++..++|+ .+.|||++++++.++.++ |||++|||+|++
T Consensus 169 -----------~~~-----------~~~~~~~i~~lr~~~~~pI--~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 169 -----------TEL-----------PDDLKELIKRIRKYTDLPI--AVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred -----------cCC-----------ChhHHHHHHHHHhcCCCcE--EEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 000 0113567777877778899 569999999999999999 999999999987
No 106
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.18 E-value=7.8e-10 Score=104.18 Aligned_cols=151 Identities=30% Similarity=0.492 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCcEEEecc-cccchh--hhcCCCCCCCChHHHH----HHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVMALE-RVPADI--RAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~--r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+.++|+++| ++| .+|... +..+|+.++.+++.+. .+++.+++||.+|.+.++.
T Consensus 79 ~aa~~~~~~G~d~I-elN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~-------------- 143 (319)
T TIGR00737 79 EAAKINEELGADII-DINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD-------------- 143 (319)
T ss_pred HHHHHHHhCCCCEE-EEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC--------------
Confidence 55788888999998 888 555432 2345776666776654 4566678999999765520
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 198 (310)
. ...+ ..+-+..+.+.|+|.+.+++..... ...
T Consensus 144 ---~--~~~~-------------------~~~~a~~l~~~G~d~i~vh~r~~~~--------------------~~~--- 176 (319)
T TIGR00737 144 ---D--AHIN-------------------AVEAARIAEDAGAQAVTLHGRTRAQ--------------------GYS--- 176 (319)
T ss_pred ---C--Ccch-------------------HHHHHHHHHHhCCCEEEEEcccccc--------------------cCC---
Confidence 0 0000 0112334456688888887541110 000
Q ss_pred HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHH
Q 037779 199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~~~~~~ 267 (310)
-...++.++.+++..++|| |++|||.|++++.+++ ..|||+|++|++++..++.+..++.
T Consensus 177 -------~~~~~~~i~~i~~~~~ipv--i~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 177 -------GEANWDIIARVKQAVRIPV--IGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ 237 (319)
T ss_pred -------CchhHHHHHHHHHcCCCcE--EEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH
Confidence 1235788888888778999 6799999999999999 5799999999999997776555443
No 107
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.17 E-value=2.6e-09 Score=94.12 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-----CcceEeeccccchHHHHHHHHcCCC
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-----TIPVMAKARIGHFVEAQILEAIGVD 116 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-----~lPv~~kd~i~~~~~~~~~~~aGad 116 (310)
..+++.++.+.++|+++++ ++. +..+.+.-+.+..+++++.+ .++|++++... +-.+.+.+.|+|
T Consensus 6 i~~~ed~~~a~~~Gvd~ig-~i~-------~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~--~i~~ia~~~~~d 75 (203)
T cd00405 6 ITTLEDALAAAEAGADAIG-FIF-------APKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLE--EILEIAEELGLD 75 (203)
T ss_pred CCCHHHHHHHHHcCCCEEE-Eec-------CCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHH--HHHHHHHhcCCC
Confidence 4568899999999999994 421 22222333466777776654 35666665543 233677789999
Q ss_pred eeeecCCCChhHHHHHHHh-cCCCCcEEeecCCHHH--HHHHHHhCCCEEEEecCCC---CCchHHHHHHHHHhhcceec
Q 037779 117 YVDESEVLTPADEENHINK-HNFRVPFVCGCRNLGE--SLRRIREGAAMIRTKGEAG---TGNIVEAVRHVRSVMGDIRV 190 (310)
Q Consensus 117 ~v~~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~e--a~~a~~~Gad~I~v~g~~~---~~~~~~~~~~~~~~~~~~~~ 190 (310)
+|+.+... +.+..+.+++ .+..+...+.+++..+ +..+...++||+.+..... +++
T Consensus 76 ~Vqlhg~e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~----------------- 137 (203)
T cd00405 76 VVQLHGDE-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGT----------------- 137 (203)
T ss_pred EEEECCCC-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCC-----------------
Confidence 99855332 3344455554 2333332255544443 3355567999986542111 000
Q ss_pred ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCC--HHHHHHH
Q 037779 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGD--PVRRARA 267 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~d--p~~~~~~ 267 (310)
+...+|++++.+. .++|+ +++||| |++++.++++.| ++||.|+|+|..++- -...+++
T Consensus 138 --------------g~~~~~~~l~~~~--~~~Pv--ilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~ 198 (203)
T cd00405 138 --------------GKTFDWSLLRGLA--SRKPV--ILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRA 198 (203)
T ss_pred --------------cceEChHHhhccc--cCCCE--EEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHH
Confidence 1123577776665 46899 457999 799999999998 999999999998721 1334455
Q ss_pred HHH
Q 037779 268 IVQ 270 (310)
Q Consensus 268 ~~~ 270 (310)
|.+
T Consensus 199 ~~~ 201 (203)
T cd00405 199 FIE 201 (203)
T ss_pred HHH
Confidence 544
No 108
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=99.16 E-value=1.1e-09 Score=99.69 Aligned_cols=195 Identities=22% Similarity=0.257 Sum_probs=120.1
Q ss_pred HHHHHHHHHcCCcEEEecc-ccc-------ch----hhh-cCCCCCCCChHHHHHHH-hhcCcceEeecccc------ch
Q 037779 45 PEQARIAEEAGACAVMALE-RVP-------AD----IRA-QGGVARMSDPQLIKQIK-SSVTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~-~~~-------~d----~r~-~~G~~~~~~~~~i~~i~-~~~~lPv~~kd~i~------~~ 104 (310)
.+.++.+.++|++.| -+. |.. .- .++ ..|.....-++.++++| +..++|++.....+ ..
T Consensus 27 ~~~~~~l~~~GaD~i-EiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e 105 (259)
T PF00290_consen 27 LEILKALEEAGADII-EIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIE 105 (259)
T ss_dssp HHHHHHHHHTTBSSE-EEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HH
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchH
Confidence 378999999999987 332 111 10 111 12443333356778888 77899998865543 22
Q ss_pred HHHHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHHH-HHHHHHhCCCEEEEecC-CCCCchHHHHH
Q 037779 105 VEAQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLGE-SLRRIREGAAMIRTKGE-AGTGNIVEAVR 179 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~e-a~~a~~~Gad~I~v~g~-~~~~~~~~~~~ 179 (310)
..++.+.++|+|++++++. +++ ++.+.+.+++..+..++..+|.++ +++..+....+|..... +-||.-
T Consensus 106 ~F~~~~~~aGvdGlIipDL-P~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~----- 179 (259)
T PF00290_consen 106 RFFKEAKEAGVDGLIIPDL-PPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSR----- 179 (259)
T ss_dssp HHHHHHHHHTEEEEEETTS-BGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTT-----
T ss_pred HHHHHHHHcCCCEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCc-----
Confidence 4667888899999998875 333 444555567777677777666555 44555666677765322 223310
Q ss_pred HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-
Q 037779 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS- 258 (310)
Q Consensus 180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~- 258 (310)
..+ . ..-.+.++.+++..++|| ++..||+++++++++. .|||||+|||+|++.
T Consensus 180 ------------~~~-~----------~~l~~~i~~ik~~~~~Pv--~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i 233 (259)
T PF00290_consen 180 ------------TEL-P----------DELKEFIKRIKKHTDLPV--AVGFGISTPEQAKKLA-AGADGVIVGSAFVKII 233 (259)
T ss_dssp ------------SSC-H----------HHHHHHHHHHHHTTSS-E--EEESSS-SHHHHHHHH-TTSSEEEESHHHHHHH
T ss_pred ------------ccc-h----------HHHHHHHHHHHhhcCcce--EEecCCCCHHHHHHHH-ccCCEEEECHHHHHHH
Confidence 000 0 012567788888788999 5699999999999998 999999999999873
Q ss_pred ----CCHHHHHHHHHHHH
Q 037779 259 ----GDPVRRARAIVQAV 272 (310)
Q Consensus 259 ----~dp~~~~~~~~~~~ 272 (310)
++....++++.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (259)
T PF00290_consen 234 EENGDDAEKFLKELKEFV 251 (259)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHH
Confidence 23344445554444
No 109
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.16 E-value=6.4e-10 Score=99.73 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=93.6
Q ss_pred HHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHHHHhh---cCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779 47 QARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQIKSS---VTIPVMAKARIGHFVEAQILEAIGVDYVDE 120 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~i~~~---~~lPv~~kd~i~~~~~~~~~~~aGad~v~~ 120 (310)
.++.+. .++++| ++| |++.-.+...|+.++++++.+.++.+. .++||++|.+.+...
T Consensus 85 ~a~~v~-~~~d~I-diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~--------------- 147 (231)
T TIGR00736 85 VLLTIA-EHADII-EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIP--------------- 147 (231)
T ss_pred HHHHHh-cCCCEE-EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCc---------------
Confidence 345554 489988 899 555444445688889999988766543 378999998875210
Q ss_pred cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 200 (310)
. .+.+-++.+.+.|+|.+.++.. +.+.
T Consensus 148 ------~-------------------~~~~~a~~l~~aGad~i~Vd~~-~~g~--------------------------- 174 (231)
T TIGR00736 148 ------L-------------------DELIDALNLVDDGFDGIHVDAM-YPGK--------------------------- 174 (231)
T ss_pred ------c-------------------hHHHHHHHHHHcCCCEEEEeeC-CCCC---------------------------
Confidence 0 0112234455667777766521 1110
Q ss_pred hhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 201 TFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 201 ~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
....++.++.+++.. ++|| |++|||.|++|+.+++++|||+|++|+++++.
T Consensus 175 -----~~a~~~~I~~i~~~~~~ipI--IgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 175 -----PYADMDLLKILSEEFNDKII--IGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred -----chhhHHHHHHHHHhcCCCcE--EEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 013578888888876 4898 78999999999999999999999999999875
No 110
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.15 E-value=1.3e-08 Score=89.49 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=110.8
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec-cccchHHHHHHHHcCCCeeeecCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA-RIGHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd-~i~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
+.++.+.++|...+ -+ .... ..-.+.|+++++...- +++.- -+.+.++++.+.++||+++..+..
T Consensus 20 ~ia~al~~gGi~~i-Ei-------t~~t----p~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA~FivSP~~- 85 (201)
T PRK06015 20 PLARALAAGGLPAI-EI-------TLRT----PAALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGSRFIVSPGT- 85 (201)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCC----ccHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCCCEEECCCC-
Confidence 67999999999987 22 1111 1115677777766531 32322 222457889999999999975542
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
.+++++..++ .+++++.++-|+.|+..+.+.|+++|+++.. ..+|
T Consensus 86 -~~~vi~~a~~--~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG------------------------------- 131 (201)
T PRK06015 86 -TQELLAAAND--SDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGG------------------------------- 131 (201)
T ss_pred -CHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCC-------------------------------
Confidence 4667777765 5699999999999999999999999999832 1111
Q ss_pred ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..+++.++. ..++|+ ++.||| +++++.+++++|+..++.||.++..
T Consensus 132 ------~~yikal~~plp~~~l--~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~~ 178 (201)
T PRK06015 132 ------AAFLKALSSPLAGTFF--CPTGGI-SLKNARDYLSLPNVVCVGGSWVAPK 178 (201)
T ss_pred ------HHHHHHHHhhCCCCcE--EecCCC-CHHHHHHHHhCCCeEEEEchhhCCc
Confidence 223444443 246788 578999 5999999999998888889999864
No 111
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.14 E-value=1.8e-09 Score=102.01 Aligned_cols=178 Identities=22% Similarity=0.287 Sum_probs=111.6
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc---------CcceEeeccc--cchHHHHH
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV---------TIPVMAKARI--GHFVEAQI 109 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~---------~lPv~~kd~i--~~~~~~~~ 109 (310)
.+.+.++|..+...|.-++.-. +.+.+.. .+.++++++.. ++.|.+-... .+++.++.
T Consensus 47 tVte~~mAiama~~Gglgvih~-~~~~e~q----------~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~ 115 (352)
T PF00478_consen 47 TVTESEMAIAMARLGGLGVIHR-NMSIEEQ----------AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEA 115 (352)
T ss_dssp TTSSHHHHHHHHHTTSEEEEES-SSCHHHH----------HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHH
T ss_pred ccchHHHHHHHHHhcCCceecC-CCCHHHH----------HHHHhhhccccccccccccccceEEEEecCCHHHHHHHHH
Confidence 3455799999999988886322 2222211 44566665431 2333332222 23567888
Q ss_pred HHHcCCCeeeec--CCCC--hhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHH
Q 037779 110 LEAIGVDYVDES--EVLT--PADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHV 181 (310)
Q Consensus 110 ~~~aGad~v~~~--~~~~--~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~ 181 (310)
+.++|+|.+.++ ..-+ ..+.++.+++..++++++++ +-|.+-++..++.|+|.|++. |+ .+++..
T Consensus 116 L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~------- 188 (352)
T PF00478_consen 116 LVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTRE------- 188 (352)
T ss_dssp HHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHH-------
T ss_pred HHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccccc-------
Confidence 999999998742 3222 33456667666677888885 889999999999999999996 43 233210
Q ss_pred HHhhcceecccccCchhHHhhhccCCCc-HHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 182 RSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
.. +++.| ...+..+.+ .-.+|| ||.|||.++-|+.+++.+|||.||+|+.|..
T Consensus 189 ---------v~------------GvG~PQ~tAv~~~a~~a~~~~v~i--IADGGi~~sGDi~KAla~GAd~VMlG~llAg 245 (352)
T PF00478_consen 189 ---------VT------------GVGVPQLTAVYECAEAARDYGVPI--IADGGIRTSGDIVKALAAGADAVMLGSLLAG 245 (352)
T ss_dssp ---------HH------------SBSCTHHHHHHHHHHHHHCTTSEE--EEESS-SSHHHHHHHHHTT-SEEEESTTTTT
T ss_pred ---------cc------------ccCCcHHHHHHHHHHHhhhccCce--eecCCcCcccceeeeeeecccceeechhhcc
Confidence 01 12222 112222222 236888 7899999999999999999999999999998
Q ss_pred CC
Q 037779 258 SG 259 (310)
Q Consensus 258 ~~ 259 (310)
+.
T Consensus 246 t~ 247 (352)
T PF00478_consen 246 TD 247 (352)
T ss_dssp BT
T ss_pred Cc
Confidence 65
No 112
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=99.14 E-value=7.9e-09 Score=93.76 Aligned_cols=182 Identities=23% Similarity=0.359 Sum_probs=119.6
Q ss_pred HHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCChH-------HHHHHHhhcCcceEeeccccch-HHHHHHHHcCC
Q 037779 46 EQARIAEEAGACAVMALE--RVPADIRAQGGVARMSDPQ-------LIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGV 115 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~~~-------~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGa 115 (310)
+.++.++++|+|+++.-| ..|- ... ..++ .+.++++.+++|+-++..-++. .-+.++.+.||
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py----~~~----~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga 104 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPY----PKR----VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGA 104 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCc----cCC----CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCC
Confidence 679999999999996555 2221 000 1133 3446677788998887655332 34567778999
Q ss_pred Ceee-ec--------CCC---ChhHHHHHHHhcCCCCcEEeecC----------CHHHHH-HH-HHhCCCEEEEecCCCC
Q 037779 116 DYVD-ES--------EVL---TPADEENHINKHNFRVPFVCGCR----------NLGESL-RR-IREGAAMIRTKGEAGT 171 (310)
Q Consensus 116 d~v~-~~--------~~~---~~~~~~~~~~~~~~~l~v~~~v~----------t~~ea~-~a-~~~Gad~I~v~g~~~~ 171 (310)
|+|- .. ..+ ...++.++-+..+..+.++.+++ +.++.. .+ ...++|.+.+.|...+
T Consensus 105 ~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG 184 (254)
T PF03437_consen 105 DFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATG 184 (254)
T ss_pred CEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccC
Confidence 9975 11 111 12244443333444577777763 344443 33 3568888888765221
Q ss_pred CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779 172 GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V 251 (310)
..++.+.++++++..++|| ++++|+ |++++.++++. |||++|
T Consensus 185 ----------------------------------~~~~~~~l~~vr~~~~~PV--lvGSGv-t~~Ni~~~l~~-ADG~IV 226 (254)
T PF03437_consen 185 ----------------------------------EPPDPEKLKRVREAVPVPV--LVGSGV-TPENIAEYLSY-ADGAIV 226 (254)
T ss_pred ----------------------------------CCCCHHHHHHHHhcCCCCE--EEecCC-CHHHHHHHHHh-CCEEEE
Confidence 2346677888888767999 569999 69999999998 999999
Q ss_pred ccccccCCC---H--HHHHHHHHHHHH
Q 037779 252 GSGVFKSGD---P--VRRARAIVQAVT 273 (310)
Q Consensus 252 Gsai~~~~d---p--~~~~~~~~~~~~ 273 (310)
||.|-+..+ | .+++++|.+.++
T Consensus 227 GS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 227 GSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred eeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 999997553 3 568888888775
No 113
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.13 E-value=3.3e-09 Score=91.10 Aligned_cols=174 Identities=26% Similarity=0.337 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH-----HHHHHHcCCCeee
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE-----AQILEAIGVDYVD 119 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~-----~~~~~~aGad~v~ 119 (310)
.++++.+.++|++.+..... +. .+.+.. ....+.+..+++..+.|+.++........ ++.+.++|+|.|.
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTR---SS-DPEEAE-TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeE---EE-CcccCC-CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 58899999999999854421 00 011110 00113577777788999999877653222 2467889999998
Q ss_pred ecCCCC-----hhHHHHHHHhcCCCCcEEeecCCHHHHHH--HHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccc
Q 037779 120 ESEVLT-----PADEENHINKHNFRVPFVCGCRNLGESLR--RIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 120 ~~~~~~-----~~~~~~~~~~~~~~l~v~~~v~t~~ea~~--a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
.+.... ..+..+.+++..+++++.+.++...+... ..+.|+|++.+.+...++..
T Consensus 90 l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~------------------ 151 (200)
T cd04722 90 IHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGG------------------ 151 (200)
T ss_pred EeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCC------------------
Confidence 543322 34555666654346888888776555444 36789999988644222110
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
... .......+..+.+..++|+ +++|||.+++++.+++++|||+|++||
T Consensus 152 -~~~---------~~~~~~~~~~~~~~~~~pi--~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 152 -RDA---------VPIADLLLILAKRGSKVPV--IAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred -ccC---------chhHHHHHHHHHhcCCCCE--EEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 000 0001233444444567899 568999988999999999999999997
No 114
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=99.13 E-value=2.2e-09 Score=93.91 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~ 123 (310)
.+.++++.++|...+ -+ .... ..-.+.|+.+++.. ++-|-+.. +-+.++++.+.++||+++..+..
T Consensus 23 ~~~~~al~~gGi~~i-Ei-------T~~t----~~a~~~I~~l~~~~p~~~vGAGT-V~~~e~a~~a~~aGA~FivSP~~ 89 (196)
T PF01081_consen 23 VPIAEALIEGGIRAI-EI-------TLRT----PNALEAIEALRKEFPDLLVGAGT-VLTAEQAEAAIAAGAQFIVSPGF 89 (196)
T ss_dssp HHHHHHHHHTT--EE-EE-------ETTS----TTHHHHHHHHHHHHTTSEEEEES---SHHHHHHHHHHT-SEEEESS-
T ss_pred HHHHHHHHHCCCCEE-EE-------ecCC----ccHHHHHHHHHHHCCCCeeEEEe-ccCHHHHHHHHHcCCCEEECCCC
Confidence 478999999999987 22 1111 01156777777765 33222222 22557889999999999976543
Q ss_pred CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779 124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 202 (310)
.+++.+..++ .+++++.++.|+.|+..+.+.|+++++++.. ..+
T Consensus 90 --~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~G------------------------------- 134 (196)
T PF01081_consen 90 --DPEVIEYARE--YGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALG------------------------------- 134 (196)
T ss_dssp ---HHHHHHHHH--HTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTT-------------------------------
T ss_pred --CHHHHHHHHH--cCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcC-------------------------------
Confidence 4677777766 3699999999999999999999999999832 111
Q ss_pred hccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 203 AKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 203 ~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
...+++.++. ..++|+ ++.||| +++++.+++++|+.++.+||.++..+
T Consensus 135 ------G~~~ik~l~~p~p~~~~--~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 135 ------GPSYIKALRGPFPDLPF--MPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp ------HHHHHHHHHTTTTT-EE--EEBSS---TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred ------cHHHHHHHhccCCCCeE--EEcCCC-CHHHHHHHHhCCCEEEEECchhcCHH
Confidence 1234444444 245777 678999 58999999999999999999999843
No 115
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.12 E-value=1.2e-09 Score=108.68 Aligned_cols=130 Identities=19% Similarity=0.179 Sum_probs=94.1
Q ss_pred hHHHHHHHHcCCCeeee--cCCCChh--HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCC--CCCchH
Q 037779 104 FVEAQILEAIGVDYVDE--SEVLTPA--DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEA--GTGNIV 175 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~~--~~~~~~~--~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~~ 175 (310)
.+.++.+.++|+|.|.+ ++..+.. +.++.+++..+++.+++ ++.|.++++.+.++|+|+|.+. |+. +++..
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~- 328 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQE- 328 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCcc-
Confidence 46788999999999873 2333333 67888887667788876 6999999999999999999874 222 22110
Q ss_pred HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai 255 (310)
..... +........+..+.+..++|| |++|||.++.|+.+++++||++|++||+|
T Consensus 329 ---------------~~~~g--------~~~~~~i~~~~~~~~~~~vpV--IadGGI~~~~di~kAla~GA~~V~vGs~~ 383 (505)
T PLN02274 329 ---------------VCAVG--------RGQATAVYKVASIAAQHGVPV--IADGGISNSGHIVKALTLGASTVMMGSFL 383 (505)
T ss_pred ---------------ccccC--------CCcccHHHHHHHHHHhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 00000 001123444566655567899 78999999999999999999999999999
Q ss_pred ccCC
Q 037779 256 FKSG 259 (310)
Q Consensus 256 ~~~~ 259 (310)
..+.
T Consensus 384 ~~t~ 387 (505)
T PLN02274 384 AGTT 387 (505)
T ss_pred cccc
Confidence 9865
No 116
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=99.12 E-value=4.3e-09 Score=92.95 Aligned_cols=189 Identities=24% Similarity=0.373 Sum_probs=126.0
Q ss_pred HHHHHHHHcCCcEEEecc----cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeee-
Q 037779 46 EQARIAEEAGACAVMALE----RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVD- 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~----~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~- 119 (310)
+.|.+++++|+++++.-| |.++++..-. ..-| ...++++.+.+.+|+-++..-++. .-+.++.+.||++|-
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k~v~~~t-vaaM--a~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRV 114 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLKDVGPET-VAAM--AVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRV 114 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCCChHH-HHHH--HHHHHHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEE
Confidence 569999999999996556 4444332110 0001 234567777888999887655432 344677889999975
Q ss_pred ec---CCCC--------hhHHHHHHHhcCCCCcEEeecC----------CHHHHHHH-H-HhCCCEEEEecCCCCCchHH
Q 037779 120 ES---EVLT--------PADEENHINKHNFRVPFVCGCR----------NLGESLRR-I-REGAAMIRTKGEAGTGNIVE 176 (310)
Q Consensus 120 ~~---~~~~--------~~~~~~~~~~~~~~l~v~~~v~----------t~~ea~~a-~-~~Gad~I~v~g~~~~~~~~~ 176 (310)
.. ...+ ..++.++....+.++.++++++ +.+++.+- . +.+||.+.+.|...+
T Consensus 115 N~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG----- 189 (263)
T COG0434 115 NVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTG----- 189 (263)
T ss_pred EeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCC-----
Confidence 11 1111 2244444444445677888764 55555432 3 467788888766332
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
..++.+.++.+++..++|| ++.+|+ +++++..+++. +||++|||.|-
T Consensus 190 -----------------------------~~~d~~el~~a~~~~~~pv--lvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 190 -----------------------------SPPDLEELKLAKEAVDTPV--LVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred -----------------------------CCCCHHHHHHHHhccCCCE--EEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 1345677788888778999 679999 69999999999 99999999998
Q ss_pred cCC---CH--HHHHHHHHHHHHcC
Q 037779 257 KSG---DP--VRRARAIVQAVTNY 275 (310)
Q Consensus 257 ~~~---dp--~~~~~~~~~~~~~~ 275 (310)
+.. || .+++++|.++.+..
T Consensus 237 ~~G~~~n~VD~~Rv~~~v~~a~~~ 260 (263)
T COG0434 237 KGGVTWNPVDLERVRRFVEAARRL 260 (263)
T ss_pred cCCEecCccCHHHHHHHHHHHHHh
Confidence 876 33 45778888877643
No 117
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.12 E-value=2e-09 Score=101.95 Aligned_cols=161 Identities=23% Similarity=0.304 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHHH----HHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+.++|+++| ++| .||.. .+...|+..+.+++.+. ++++.+++||.+|.+++..
T Consensus 81 ~aA~~~~~~g~d~I-dlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~-------------- 145 (333)
T PRK11815 81 EAAKLAEDWGYDEI-NLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGID-------------- 145 (333)
T ss_pred HHHHHHHhcCCCEE-EEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeC--------------
Confidence 45788888999998 898 44432 22223666777776654 5566678999999876521
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 198 (310)
+..+..+..+ -+..+.+.|++.+.++++.... ...+...
T Consensus 146 ---~~~t~~~~~~-------------------~~~~l~~aG~d~i~vh~Rt~~~-------------------~g~~~~~ 184 (333)
T PRK11815 146 ---DQDSYEFLCD-------------------FVDTVAEAGCDTFIVHARKAWL-------------------KGLSPKE 184 (333)
T ss_pred ---CCcCHHHHHH-------------------HHHHHHHhCCCEEEEcCCchhh-------------------cCCCccc
Confidence 0001111111 1233445688888777442100 0000000
Q ss_pred HHhhhcc-CCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779 199 VFTFAKN-IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 199 ~~~~~~~-~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
.+. ....++.+..+++. .++|| |++|||.|++++.++++ |||+|++|++++..++.+..++++.
T Consensus 185 ----~~~~~~~~~~~i~~v~~~~~~iPV--I~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~ 250 (333)
T PRK11815 185 ----NREIPPLDYDRVYRLKRDFPHLTI--EINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDREL 250 (333)
T ss_pred ----cccCCCcCHHHHHHHHHhCCCCeE--EEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHh
Confidence 000 12357888888876 48999 67999999999999987 6999999999999887666555443
No 118
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.10 E-value=5e-10 Score=106.18 Aligned_cols=181 Identities=22% Similarity=0.249 Sum_probs=110.9
Q ss_pred HHHHHHHHcCCcEEEecc-cc-cchhhhcCCCCC-CCChHHHHHHHhhcCcceEeecccc---chHHHHHHHHcCCCeee
Q 037779 46 EQARIAEEAGACAVMALE-RV-PADIRAQGGVAR-MSDPQLIKQIKSSVTIPVMAKARIG---HFVEAQILEAIGVDYVD 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~-~~d~r~~~G~~~-~~~~~~i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~aGad~v~ 119 (310)
++++.+.++|+++| .+| .+ |.+.. +.|... ....+.++++++.+++||++|...+ ..+.++.+.++|+|+|.
T Consensus 118 ~~a~~~~~agad~i-elN~scpp~~~~-~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~ 195 (334)
T PRK07565 118 DYARQIEQAGADAL-ELNIYYLPTDPD-ISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLV 195 (334)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCCCCCC-CccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEE
Confidence 67899999999998 677 33 32221 222211 1124667888988999999995432 12455777889999986
Q ss_pred ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhH
Q 037779 120 ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 199 (310)
.+..... ..+ +..+. . . ..+..+++. .
T Consensus 196 ~~n~~~~-------------~~~--d~~~~----~-------~--~~~~glsg~------------------------~- 222 (334)
T PRK07565 196 LFNRFYQ-------------PDI--DLETL----E-------V--VPGLVLSTP------------------------A- 222 (334)
T ss_pred EECCcCC-------------CCc--Chhhc----c-------c--ccCCCCCCc------------------------h-
Confidence 4322100 000 00000 0 0 000111110 0
Q ss_pred HhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChh
Q 037779 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPD 279 (310)
Q Consensus 200 ~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~ 279 (310)
.....++.+..+++..++|| |+.|||.|++|+.+++.+||++|++||+++... | ...+.+.+.+..+....
T Consensus 223 -----~~~~al~~v~~~~~~~~ipI--ig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g-~-~~~~~i~~~L~~~l~~~ 293 (334)
T PRK07565 223 -----ELRLPLRWIAILSGRVGADL--AATTGVHDAEDVIKMLLAGADVVMIASALLRHG-P-DYIGTILRGLEDWMERH 293 (334)
T ss_pred -----hhhHHHHHHHHHHhhcCCCE--EEECCCCCHHHHHHHHHcCCCceeeehHHhhhC-c-HHHHHHHHHHHHHHHHc
Confidence 00113455666666667999 678999999999999999999999999999842 2 45666777777666666
Q ss_pred hHHhhhhccCC
Q 037779 280 VLAEVSCGLGE 290 (310)
Q Consensus 280 ~~~~~~~~~~~ 290 (310)
.+..+.+..|.
T Consensus 294 g~~~i~e~~g~ 304 (334)
T PRK07565 294 GYESLQQFRGS 304 (334)
T ss_pred CCCCHHHHhcc
Confidence 66666666664
No 119
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.10 E-value=1.7e-08 Score=89.95 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=110.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--Ccc-eEeec-cccchHHHHHHHHcCCCeeeec
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIP-VMAKA-RIGHFVEAQILEAIGVDYVDES 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lP-v~~kd-~i~~~~~~~~~~~aGad~v~~~ 121 (310)
+.++++.++|...+ -+ .... ....+.++++++.. ..| +++.- -+-+.++++.+.++||+++..+
T Consensus 31 ~~~~al~~gGi~~i-Ei-------T~~t----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP 98 (222)
T PRK07114 31 KVIKACYDGGARVF-EF-------TNRG----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTP 98 (222)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCC----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 67999999999987 22 1111 11155666665432 233 33322 2225578899999999999755
Q ss_pred CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779 122 EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 201 (310)
.. .+++.+..++ .+++++.++.|+.|+..+.++|+++++++.....
T Consensus 99 ~~--~~~v~~~~~~--~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~------------------------------ 144 (222)
T PRK07114 99 LF--NPDIAKVCNR--RKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVY------------------------------ 144 (222)
T ss_pred CC--CHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECccccc------------------------------
Confidence 32 4677777765 4699999999999999999999999999832111
Q ss_pred hhccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCH--HHHHHHHHcCCCEEEEccccccCC
Q 037779 202 FAKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATP--ADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 202 ~~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~--~di~~~~~~GadgV~VGsai~~~~ 259 (310)
....++.++. ..++|+ ++.|||+ + +++.+++++|+.+|.+||.++..+
T Consensus 145 -------G~~~ikal~~p~p~i~~--~ptGGV~-~~~~n~~~yl~aGa~avg~Gs~L~~~~ 195 (222)
T PRK07114 145 -------GPGFVKAIKGPMPWTKI--MPTGGVE-PTEENLKKWFGAGVTCVGMGSKLIPKE 195 (222)
T ss_pred -------CHHHHHHHhccCCCCeE--EeCCCCC-cchhcHHHHHhCCCEEEEEChhhcCcc
Confidence 1223344433 245778 6789995 5 899999999999999999998643
No 120
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.09 E-value=1.1e-08 Score=98.43 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=109.5
Q ss_pred hHHHHHHHhh-cCcceEeeccccch-HH-HHHHHHcCCCeeeecCCCC---hhHHHHHHHhcCCCCcEEe---ecCCHHH
Q 037779 81 PQLIKQIKSS-VTIPVMAKARIGHF-VE-AQILEAIGVDYVDESEVLT---PADEENHINKHNFRVPFVC---GCRNLGE 151 (310)
Q Consensus 81 ~~~i~~i~~~-~~lPv~~kd~i~~~-~~-~~~~~~aGad~v~~~~~~~---~~~~~~~~~~~~~~l~v~~---~v~t~~e 151 (310)
++.++++++. .+.++.+...+.+. .. ++.+.++|||.+..+...+ +...++.+++. |+.+++ .++|+.+
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~--GikvgVD~lnp~tp~e 291 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKT--GIYSILDMLNVEDPVK 291 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHc--CCEEEEEEcCCCCHHH
Confidence 7889999987 67888887665422 22 5677889999987553222 34455555554 455555 4667777
Q ss_pred HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccC
Q 037779 152 SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAG 230 (310)
Q Consensus 152 a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~G 230 (310)
..+.+..++|++.++.....+. ....++.++.+++. .++++ .++|
T Consensus 292 ~i~~l~~~vD~Vllht~vdp~~--------------------------------~~~~~~kI~~ikk~~~~~~I--~VdG 337 (391)
T PRK13307 292 LLESLKVKPDVVELHRGIDEEG--------------------------------TEHAWGNIKEIKKAGGKILV--AVAG 337 (391)
T ss_pred HHHHhhCCCCEEEEccccCCCc--------------------------------ccchHHHHHHHHHhCCCCcE--EEEC
Confidence 7666688999998862111000 01234555666653 45677 5689
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 231 GI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~ 272 (310)
||+ ++++.+++++|+|.+++||+|++++||.+.+++|++.+
T Consensus 338 GI~-~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 338 GVR-VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred CcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 995 99999999999999999999999999999999999887
No 121
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.09 E-value=7.3e-10 Score=104.64 Aligned_cols=181 Identities=23% Similarity=0.256 Sum_probs=111.1
Q ss_pred HHHHHHHHcCCcEEEecc-cc-cchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc---chHHHHHHHHcCCCeeee
Q 037779 46 EQARIAEEAGACAVMALE-RV-PADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG---HFVEAQILEAIGVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~-~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~aGad~v~~ 120 (310)
++++.++++|+++| .+| .+ +.+....++.....-.+.++++++.+++||++|.... ..+.++.+.++|||+|..
T Consensus 116 ~~a~~~~~~gad~i-ElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 116 DYARQIEEAGADAL-ELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 67899999999998 787 43 3333222211000113567888888899999995543 124567778899999874
Q ss_pred cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 200 (310)
+.... +.. ++..+.. .. . +..+++..
T Consensus 195 ~nt~~-------------~~~--id~~~~~-----------~~-~-~~glSG~~-------------------------- 220 (325)
T cd04739 195 FNRFY-------------QPD--IDLETLE-----------VV-P-NLLLSSPA-------------------------- 220 (325)
T ss_pred EcCcC-------------CCC--ccccccc-----------ee-c-CCCcCCcc--------------------------
Confidence 33210 000 0000100 00 0 01111110
Q ss_pred hhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhh
Q 037779 201 TFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDV 280 (310)
Q Consensus 201 ~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~ 280 (310)
......+.+..+.+..++|| |+.|||.|++|+.+.+.+||++|++||+++... | .....+.+.+..+.+...
T Consensus 221 ----~~~~al~~v~~v~~~~~ipI--ig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~g-p-~~~~~i~~~L~~~l~~~g 292 (325)
T cd04739 221 ----EIRLPLRWIAILSGRVKASL--AASGGVHDAEDVVKYLLAGADVVMTTSALLRHG-P-DYIGTLLAGLEAWMEEHG 292 (325)
T ss_pred ----chhHHHHHHHHHHcccCCCE--EEECCCCCHHHHHHHHHcCCCeeEEehhhhhcC-c-hHHHHHHHHHHHHHHHcC
Confidence 01123556667766668999 678999999999999999999999999999842 2 345666666666666666
Q ss_pred HHhhhhccC
Q 037779 281 LAEVSCGLG 289 (310)
Q Consensus 281 ~~~~~~~~~ 289 (310)
+..+.+..|
T Consensus 293 ~~~i~e~~G 301 (325)
T cd04739 293 YESVQQLRG 301 (325)
T ss_pred CCCHHHHhc
Confidence 666666666
No 122
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.08 E-value=5.4e-09 Score=97.49 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=112.2
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc--cchHHHHHHHH--cCCC
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEA--IGVD 116 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~--aGad 116 (310)
.+.+.++|..+.+.|.-.++ .+..+.+.+ .+.++.++.....-+.+-..+ .+++.++.+.+ +|+|
T Consensus 56 TV~~~~mA~~la~~g~~~~i-Hk~~~~e~~----------~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D 124 (346)
T PRK05096 56 TVGTFEMAKALASFDILTAV-HKHYSVEEW----------AAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALN 124 (346)
T ss_pred ccccHHHHHHHHHCCCeEEE-ecCCCHHHH----------HHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCC
Confidence 34556999999999887752 111111111 233444443322222222222 24567777777 5999
Q ss_pred eeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHHHHhhcce
Q 037779 117 YVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHVRSVMGDI 188 (310)
Q Consensus 117 ~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~~~~~~~~ 188 (310)
+|.++ .. ....+.++.++++.+++.++++ +-|.+.++..+++|||.++|. |+ .+++..
T Consensus 125 ~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~-------------- 190 (346)
T PRK05096 125 FICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRV-------------- 190 (346)
T ss_pred EEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCcc--------------
Confidence 98732 22 2234566777777788888885 889999999999999999886 44 343321
Q ss_pred ecccccCchhHHhhhccCCCc-HHHHHHHH---hcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 189 RVLRNMDDDEVFTFAKNIAAP-YDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~---~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.. +.+.| ...+..+. ....+|| ||.|||.++-|+.+++.+|||.||+||.|...+
T Consensus 191 --vt------------GvG~PQltAV~~~a~~a~~~gvpi--IADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~ 249 (346)
T PRK05096 191 --KT------------GVGYPQLSAVIECADAAHGLGGQI--VSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHE 249 (346)
T ss_pred --cc------------ccChhHHHHHHHHHHHHHHcCCCE--EecCCcccccHHHHHHHcCCCEEEeChhhcCcc
Confidence 11 11211 11222222 2246899 789999999999999999999999999998865
No 123
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.08 E-value=3.4e-08 Score=87.65 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
+.++.+.++|.+.| -+ .... ..-.+.++++++... +-|.+.. +.+.++++.+.++||+++..+..
T Consensus 31 ~i~~al~~~Gi~~i-Ei-------tl~~----~~~~~~I~~l~~~~p~~~IGAGT-Vl~~~~a~~a~~aGA~FivsP~~- 96 (212)
T PRK05718 31 PLAKALVAGGLPVL-EV-------TLRT----PAALEAIRLIAKEVPEALIGAGT-VLNPEQLAQAIEAGAQFIVSPGL- 96 (212)
T ss_pred HHHHHHHHcCCCEE-EE-------ecCC----ccHHHHHHHHHHHCCCCEEEEee-ccCHHHHHHHHHcCCCEEECCCC-
Confidence 67999999999987 22 1100 111567788876653 3332222 23447889999999999975543
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
++ ++++...+ .+++.+.++.|+.|+..+.+.|+++++++....
T Consensus 97 ~~-~vi~~a~~--~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~---------------------------------- 139 (212)
T PRK05718 97 TP-PLLKAAQE--GPIPLIPGVSTPSELMLGMELGLRTFKFFPAEA---------------------------------- 139 (212)
T ss_pred CH-HHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEEccchh----------------------------------
Confidence 44 77777765 568888899999999999999999999962110
Q ss_pred cCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 205 NIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 205 ~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+ ....++.++. ..++|+ ++.||| +++++.+++++|+..++.||.++..+
T Consensus 140 -~g-g~~~lk~l~~p~p~~~~--~ptGGV-~~~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 140 -SG-GVKMLKALAGPFPDVRF--CPTGGI-SPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred -cc-CHHHHHHHhccCCCCeE--EEeCCC-CHHHHHHHHhCCCEEEEEChHhCCcc
Confidence 00 1233444443 245788 568999 59999999999977777788888643
No 124
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.05 E-value=1.6e-08 Score=94.36 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=114.9
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc--cchHHHHHHHHc--CCC
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEAI--GVD 116 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~a--Gad 116 (310)
.+.+.++|..+.+.|.-.++ . |.+. . ....+.++.+......-+++-..+ .+++.++.+.++ |+|
T Consensus 55 tv~~~~mA~~la~~g~~~~i-H-------k~~~-~--e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d 123 (343)
T TIGR01305 55 TVGTFEMAAALSQHSIFTAI-H-------KHYS-V--DEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLK 123 (343)
T ss_pred cccCHHHHHHHHHCCCeEEE-e-------eCCC-H--HHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCC
Confidence 34556999999999887752 1 2221 0 000222333222222223332222 245778888887 499
Q ss_pred eeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHHHHhhcce
Q 037779 117 YVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHVRSVMGDI 188 (310)
Q Consensus 117 ~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~~~~~~~~ 188 (310)
+|.+. .. ....+.++.++++.++..++.+ +-|++.++.++++|||.|++. |+ .+++.
T Consensus 124 ~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR--------------- 188 (343)
T TIGR01305 124 FICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTR--------------- 188 (343)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCc---------------
Confidence 98732 22 2234566777777678889998 999999999999999999886 44 34331
Q ss_pred ecccccCchhHHhhhccCC-CcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 189 RVLRNMDDDEVFTFAKNIA-APYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+. +.+ +....+..+.+. .++|| |+.|||.+..|+.+++.+|||+||+|+.+...+
T Consensus 189 -~~~------------Gvg~pqltAv~~~a~aa~~~~v~V--IaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~ 248 (343)
T TIGR01305 189 -TKT------------GVGYPQLSAVIECADAAHGLKGHI--ISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHT 248 (343)
T ss_pred -eeC------------CCCcCHHHHHHHHHHHhccCCCeE--EEcCCcCchhHHHHHHHcCCCEEEECHhhhCcC
Confidence 111 112 234444544443 26889 679999999999999999999999999887765
No 125
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=3.7e-08 Score=84.44 Aligned_cols=189 Identities=18% Similarity=0.220 Sum_probs=122.7
Q ss_pred HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcc--eEeeccccchH-HHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP--VMAKARIGHFV-EAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP--v~~kd~i~~~~-~~~~~~~aGad~v 118 (310)
+.++++..+|++|++ +.+++|. + .|+ +-.++++|++++.| +-+.-.+...+ .++....+||+.+
T Consensus 21 ~e~~~~l~~GadwlHlDVMDg~FVpN-i-T~G-------~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~ 91 (224)
T KOG3111|consen 21 AECKKMLDAGADWLHLDVMDGHFVPN-I-TFG-------PPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLF 91 (224)
T ss_pred HHHHHHHHcCCCeEEEeeecccccCC-c-ccc-------hHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceE
Confidence 679999999999983 2225553 2 344 56889999998876 33444444333 3467778999997
Q ss_pred eec--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEE--ecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779 119 DES--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRT--KGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 119 ~~~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
..+ ....+.++++.+++.+....+.+...|.-|...-...-.|++-+ -.+++++- +.+
T Consensus 92 tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQ------------------kFm 153 (224)
T KOG3111|consen 92 TFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQ------------------KFM 153 (224)
T ss_pred EEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchh------------------hhH
Confidence 632 22357888888888654444444555554444433445566533 24555441 000
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~ 273 (310)
+ | -...++++++. .+.-+ =+.||+ +++++.++.++||+.++.||+++++.||.+.++.+++.+.
T Consensus 154 e-~-----------mm~KV~~lR~kyp~l~i--evDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 154 E-D-----------MMPKVEWLREKYPNLDI--EVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVE 218 (224)
T ss_pred H-H-----------HHHHHHHHHHhCCCceE--EecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHh
Confidence 0 0 11223344432 22222 258999 5999999999999999999999999999999999998887
Q ss_pred cCC
Q 037779 274 NYS 276 (310)
Q Consensus 274 ~~~ 276 (310)
.+.
T Consensus 219 ~a~ 221 (224)
T KOG3111|consen 219 KAA 221 (224)
T ss_pred hhh
Confidence 554
No 126
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=99.03 E-value=5.3e-08 Score=88.49 Aligned_cols=189 Identities=21% Similarity=0.258 Sum_probs=118.2
Q ss_pred HHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCC-hHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee-
Q 037779 46 EQARIAEEAGACAVMALE--RVPADIRAQGGVARMSD-PQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE- 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~-~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~- 120 (310)
+.++.|.++|+|+|++-| ..|-..+ -+...... ...+.+++..+.+|+-++...++. .-+.++.+.|+++|-.
T Consensus 32 ~ea~~l~~~GvD~viveN~~d~P~~~~--~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENFFDAPFLKE--VDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCcCC--CCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 679999999999996655 2221000 00000000 223456777788898776555332 3456777899999752
Q ss_pred ----c---CC----CChhHHHHHHHhcCCCCcEEeecC----------CHHHH-HHHHHhC-CCEEEEecCCCCCchHHH
Q 037779 121 ----S---EV----LTPADEENHINKHNFRVPFVCGCR----------NLGES-LRRIREG-AAMIRTKGEAGTGNIVEA 177 (310)
Q Consensus 121 ----~---~~----~~~~~~~~~~~~~~~~l~v~~~v~----------t~~ea-~~a~~~G-ad~I~v~g~~~~~~~~~~ 177 (310)
+ +. ....++.++-+..+.++.++.+++ +.+|. +.+...+ +|.+.+.|...+
T Consensus 110 ~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG------ 183 (257)
T TIGR00259 110 VLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTG------ 183 (257)
T ss_pred cEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC------
Confidence 1 11 122344444444344566666653 44443 3444444 898888765322
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
...+++.++.+++. .++|+ +.+||+ +++++.++++. +||+.|||.|-
T Consensus 184 ----------------------------~~~d~~~l~~vr~~~~~~Pv--llggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 184 ----------------------------TEVDLELLKLAKETVKDTPV--LAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred ----------------------------CCCCHHHHHHHHhccCCCeE--EEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 23467888888763 46898 569999 69999999998 99999999997
Q ss_pred cCCC-----HHHHHHHHHHHHHc
Q 037779 257 KSGD-----PVRRARAIVQAVTN 274 (310)
Q Consensus 257 ~~~d-----p~~~~~~~~~~~~~ 274 (310)
+..+ -.+++++|.+.++.
T Consensus 232 ~~G~~~n~~D~~rV~~Fm~~v~~ 254 (257)
T TIGR00259 232 KDGVFNNFVDQARVSQFVEKVAH 254 (257)
T ss_pred cCCccCCCcCHHHHHHHHHHHHH
Confidence 6442 24678888887764
No 127
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.02 E-value=1.2e-08 Score=97.54 Aligned_cols=144 Identities=25% Similarity=0.398 Sum_probs=94.6
Q ss_pred HHHHHHHhhcCcceEeecccc---chHHHHHHHHcCCCeeeec----------CCCChhHHHHHHHhcCCCCcEEe-ecC
Q 037779 82 QLIKQIKSSVTIPVMAKARIG---HFVEAQILEAIGVDYVDES----------EVLTPADEENHINKHNFRVPFVC-GCR 147 (310)
Q Consensus 82 ~~i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~aGad~v~~~----------~~~~~~~~~~~~~~~~~~l~v~~-~v~ 147 (310)
+.++++++.. +.++.++. ..+.++.+.++|+|.+.++ ..-.+.++.+.++. .++++++ ++.
T Consensus 123 ~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~--~~IPVI~G~V~ 197 (369)
T TIGR01304 123 ERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE--LDVPVIAGGVN 197 (369)
T ss_pred HHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH--CCCCEEEeCCC
Confidence 3456666543 66776664 2366789999999998743 11235555555544 4688887 799
Q ss_pred CHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHH--------HHh
Q 037779 148 NLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQ--------TKQ 218 (310)
Q Consensus 148 t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~--------i~~ 218 (310)
|.++++++.+.|||.|.+ |+..+.... ..+ +...+ .+.+.. +.+
T Consensus 198 t~e~A~~~~~aGaDgV~~-G~gg~~~~~-------------~~l-------------g~~~p~~~ai~d~~~a~~~~~~e 250 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVIV-GPGGANTTR-------------LVL-------------GIEVPMATAIADVAAARRDYLDE 250 (369)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCcccc-------------ccc-------------CCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999874 332221100 000 00111 112222 122
Q ss_pred cC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 219 LG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 219 ~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.. .+|| ||+|||.++.|+.+++.+|||+|++|++|..+.
T Consensus 251 ~g~r~vpV--IAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~ 291 (369)
T TIGR01304 251 TGGRYVHV--IADGGIETSGDLVKAIACGADAVVLGSPLARAA 291 (369)
T ss_pred cCCCCceE--EEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhh
Confidence 21 3788 789999999999999999999999999999854
No 128
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.01 E-value=3.6e-09 Score=104.49 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCCeeeec----CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHH
Q 037779 105 VEAQILEAIGVDYVDES----EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GE--AGTGNIVE 176 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~----~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~ 176 (310)
+.++.+.+.|++.|... ......+.++.++++.+++.+++ ++.|.++++.++++|+|+|++. |+ .+|..
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~--- 306 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTR--- 306 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccc---
Confidence 56678888999998732 22345677888888778899999 7999999999999999999875 33 33321
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
...... .+.+..+..+.+ ..++|| ||+|||+++.|+.+++.+||++|++|+
T Consensus 307 -------------~~~~~~-----------~p~~~av~~~~~~~~~~~~~v--ia~ggi~~~~~~~~al~~ga~~v~~g~ 360 (479)
T PRK07807 307 -------------MMTGVG-----------RPQFSAVLECAAAARELGAHV--WADGGVRHPRDVALALAAGASNVMIGS 360 (479)
T ss_pred -------------cccCCc-----------hhHHHHHHHHHHHHHhcCCcE--EecCCCCCHHHHHHHHHcCCCeeeccH
Confidence 111100 123455555554 246899 789999999999999999999999999
Q ss_pred ccccCC
Q 037779 254 GVFKSG 259 (310)
Q Consensus 254 ai~~~~ 259 (310)
.|..++
T Consensus 361 ~~ag~~ 366 (479)
T PRK07807 361 WFAGTY 366 (479)
T ss_pred hhccCc
Confidence 999865
No 129
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.99 E-value=1.1e-08 Score=95.67 Aligned_cols=158 Identities=26% Similarity=0.299 Sum_probs=98.2
Q ss_pred HHHHHHHHcCCcEEEecc-cccchh-hhcCCCCCCCChHHHH----HHHhhcCcceEeeccccc---hHHHHHHHHcCCC
Q 037779 46 EQARIAEEAGACAVMALE-RVPADI-RAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGH---FVEAQILEAIGVD 116 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~-r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad 116 (310)
+.++.+++.|+++| .+| .||.-. +...|+..+.+++.+. .+++.+++||++|...+. .+.++.+.++|+|
T Consensus 117 ~~a~~~~~~gad~i-elN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gad 195 (299)
T cd02940 117 ELAKLVEEAGADAL-ELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGAD 195 (299)
T ss_pred HHHHHHHhcCCCEE-EEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCC
Confidence 56888888899998 888 555432 1223555566666655 455667899999966532 2456778889999
Q ss_pred eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC----CCCCchHHHHHHHHHhhcceeccc
Q 037779 117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE----AGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~----~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
.|......... ...+.++. .-...+++. .+++.
T Consensus 196 gi~~~Nt~~~~--------------~~id~~~~----------~~~~~~~~~~~~gg~sG~------------------- 232 (299)
T cd02940 196 GVSAINTVNSL--------------MGVDLDGT----------PPAPGVEGKTTYGGYSGP------------------- 232 (299)
T ss_pred EEEEecccccc--------------cccccccC----------CccccccCCCCcCcccCC-------------------
Confidence 98733221100 00010000 000011111 11110
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCC
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGD 260 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~d 260 (310)
......++.+.++++.. ++|| |+.|||.+.+|+.+++.+||++|++||+++. .++
T Consensus 233 -----------a~~p~~l~~v~~~~~~~~~~ipI--ig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~ 290 (299)
T cd02940 233 -----------AVKPIALRAVSQIARAPEPGLPI--SGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFT 290 (299)
T ss_pred -----------CcchHHHHHHHHHHHhcCCCCcE--EEECCCCCHHHHHHHHHcCCChheEceeecccCCc
Confidence 00122477788888766 7999 6789999999999999999999999999888 443
No 130
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=98.99 E-value=7.5e-09 Score=91.17 Aligned_cols=174 Identities=20% Similarity=0.268 Sum_probs=109.8
Q ss_pred HHHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeee
Q 037779 45 PEQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVD 119 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~ 119 (310)
.+.++.+.++|+++++ +.+++|. . .|+ ++.++++++.+++|+-++-.+.+. ..++.+..+|++.|.
T Consensus 15 ~~~i~~l~~~g~d~lHiDiMDg~fvpn-~-~~g-------~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~ 85 (201)
T PF00834_consen 15 EEEIKRLEEAGADWLHIDIMDGHFVPN-L-TFG-------PDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYIT 85 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEEEBSSSSSS-B--B--------HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHcCCCEEEEeecccccCCc-c-cCC-------HHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEE
Confidence 3789999999999973 3335553 1 243 889999999999999998877643 456888999999987
Q ss_pred ec--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCc--hHHHHHHHHHhhcceecccc
Q 037779 120 ES--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGN--IVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 120 ~~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~--~~~~~~~~~~~~~~~~~l~~ 193 (310)
.+ ....+.++++.+++++....+.+...|+-+...-.-.-.|+|.+. .++++|- ..++++.+
T Consensus 86 ~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI------------ 153 (201)
T PF00834_consen 86 FHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKI------------ 153 (201)
T ss_dssp EEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHH------------
T ss_pred EcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHH------------
Confidence 43 333567788888887665666666666555433333367887654 3344331 11111111
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.++.+.+.+. .++.+ -+.||| +.+++.++.++|||.+++||+++++
T Consensus 154 ----------------~~l~~~~~~~~~~~~I--~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 154 ----------------RELRKLIPENGLDFEI--EVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp ----------------HHHHHHHHHHTCGSEE--EEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred ----------------HHHHHHHHhcCCceEE--EEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 1122222221 23455 568999 5899999999999999999999985
No 131
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.98 E-value=4.1e-09 Score=102.93 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=110.6
Q ss_pred HHHHHHHHcCCcEEEecc-cccc-hhhhcCCCCCCCChHHHH----HHHhhcCcceEeeccccc---hHHHHHHHHcCCC
Q 037779 46 EQARIAEEAGACAVMALE-RVPA-DIRAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGH---FVEAQILEAIGVD 116 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~-d~r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad 116 (310)
++++.+++.|+++| .|| .+|. ......|.....+++.+. .+++.+++||++|..-.. .+.++.+.++|||
T Consensus 117 ~~a~~~~~~g~d~i-elN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gad 195 (420)
T PRK08318 117 EIAPLVEETGADGI-ELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGAD 195 (420)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCC
Confidence 67889999999998 899 5554 221223455566677654 455567899999966532 2456778889999
Q ss_pred eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC----CCCCchHHHHHHHHHhhcceeccc
Q 037779 117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE----AGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~----~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
.+.......... .+++.+.. +.- .+++. .++|.
T Consensus 196 gi~~~Nt~~~~~--------------~id~~~~~--------~~p--~~~~~~~~gg~SG~------------------- 232 (420)
T PRK08318 196 AVSLINTINSIT--------------GVDLDRMI--------PMP--IVNGKSSHGGYCGP------------------- 232 (420)
T ss_pred EEEEecccCccc--------------cccccccC--------CCc--eecCCCCcccccch-------------------
Confidence 987322211000 00111000 000 01111 11111
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhcC---CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~---~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~ 269 (310)
. .....++.+..+.+.. ++|| |+.|||.|.+|+.+.+.+||++|++||+++..+ ...++.+.
T Consensus 233 -----a------~~p~~l~~v~~~~~~~~~~~ipI--ig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~g--p~ii~~I~ 297 (420)
T PRK08318 233 -----A------VKPIALNMVAEIARDPETRGLPI--SGIGGIETWRDAAEFILLGAGTVQVCTAAMQYG--FRIVEDMI 297 (420)
T ss_pred -----h------hhHHHHHHHHHHHhccccCCCCE--EeecCcCCHHHHHHHHHhCCChheeeeeeccCC--chhHHHHH
Confidence 0 0112467777777754 7899 678999999999999999999999999999722 23455566
Q ss_pred HHHHcCCChhhHHhhhhccC
Q 037779 270 QAVTNYSDPDVLAEVSCGLG 289 (310)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~ 289 (310)
..+..+.....+..+.+..|
T Consensus 298 ~~L~~~l~~~g~~si~e~iG 317 (420)
T PRK08318 298 SGLSHYMDEKGFASLEDMVG 317 (420)
T ss_pred HHHHHHHHHcCcchHHHHhc
Confidence 65555444444444444444
No 132
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.98 E-value=1.6e-08 Score=94.30 Aligned_cols=75 Identities=19% Similarity=0.406 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhccC
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLG 289 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (310)
.+.+.++++..++|| |+.|||.+++++.+++++|||+|++|++++..++ ..+.+.+.+..+.....+..+.+..|
T Consensus 223 l~~v~~i~~~~~ipv--i~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~---~~~~i~~~l~~~~~~~g~~~~~e~~g 297 (300)
T TIGR01037 223 LRMVYDVYKMVDIPI--IGVGGITSFEDALEFLMAGASAVQVGTAVYYRGF---AFKKIIEGLIAFLKAEGFTSIEELIG 297 (300)
T ss_pred HHHHHHHHhcCCCCE--EEECCCCCHHHHHHHHHcCCCceeecHHHhcCch---HHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 466777777778999 6789999999999999999999999999998654 45666666666666666666655544
No 133
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.98 E-value=1.2e-07 Score=87.25 Aligned_cols=69 Identities=29% Similarity=0.361 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCCEEEEccCCCC--CHHHHHH----HHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhH
Q 037779 211 DLVMQTKQLGRLPVVHFAAGGVA--TPADAAM----MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVL 281 (310)
Q Consensus 211 ~l~~~i~~~~~iPVv~ia~GGI~--t~~di~~----~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~ 281 (310)
+.++.+.+..++|| +++|||+ |.+++.+ ++++||+|+.+|+.|++.+||.+++++|...++....+.-.
T Consensus 186 ~~l~~~~~~~~ipV--~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~~~~~~ea 260 (267)
T PRK07226 186 ESFREVVEGCPVPV--VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHEGASVEEA 260 (267)
T ss_pred HHHHHHHHhCCCCE--EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhCCCCHHHH
Confidence 44555555457899 4679998 6665544 45999999999999999999999999999999887765433
No 134
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.97 E-value=5e-08 Score=94.31 Aligned_cols=181 Identities=19% Similarity=0.176 Sum_probs=110.3
Q ss_pred Cccc-cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-c-CcceEeeccccc------hHHH
Q 037779 37 GVIM-DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-V-TIPVMAKARIGH------FVEA 107 (310)
Q Consensus 37 g~i~-~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~-~lPv~~kd~i~~------~~~~ 107 (310)
|.|- .+.+++++.++.++|.-++.-....+.+. --+.|+++++. + +.|+-++.+... .+.+
T Consensus 19 gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~----------l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v 88 (418)
T cd04742 19 GAMARGIASAELVVAMGKAGMLGFFGAGGLPLDE----------VEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLV 88 (418)
T ss_pred CcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHH----------HHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHH
Confidence 4444 57889999999999988752110111100 02345677764 5 789888866521 1346
Q ss_pred HHHHHcCCCeeeecCCCChhHHHHHHHhcCCC----------CcEEeecC--------------------------CHHH
Q 037779 108 QILEAIGVDYVDESEVLTPADEENHINKHNFR----------VPFVCGCR--------------------------NLGE 151 (310)
Q Consensus 108 ~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~----------l~v~~~v~--------------------------t~~e 151 (310)
+.+.+.|+..|..+..+.+......++.++.. ..++..+. |.+|
T Consensus 89 ~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~e 168 (418)
T cd04742 89 DLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQ 168 (418)
T ss_pred HHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHH
Confidence 77888999988644322221111233333221 12444443 6778
Q ss_pred HHHHHHhC-CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh---c--------
Q 037779 152 SLRRIREG-AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ---L-------- 219 (310)
Q Consensus 152 a~~a~~~G-ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~---~-------- 219 (310)
++.+.+.| +|.|.+....+ ||. +......+++.+.+ .
T Consensus 169 A~~A~~~g~aD~Ivvq~EAG-GH~------------------------------g~~~~~~Llp~v~~l~d~v~~~~~~~ 217 (418)
T cd04742 169 AELARRVPVADDITVEADSG-GHT------------------------------DNRPLSVLLPTIIRLRDELAARYGYR 217 (418)
T ss_pred HHHHHhCCCCCEEEEcccCC-CCC------------------------------CCccHHhHHHHHHHHHHHHhhccccC
Confidence 88888888 59998874333 331 00112223333322 1
Q ss_pred CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
.++|| +++|||.|++++..++.+||++|.+||.+.-+..
T Consensus 218 ~~ipV--iAAGGI~tg~~vaAA~alGAd~V~~GT~flat~E 256 (418)
T cd04742 218 RPIRV--GAAGGIGTPEAAAAAFALGADFIVTGSINQCTVE 256 (418)
T ss_pred CCceE--EEECCCCCHHHHHHHHHcCCcEEeeccHHHhCcc
Confidence 15788 7899999999999999999999999999988653
No 135
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=9e-08 Score=83.92 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=109.5
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc-cchHHHHHHHHcCCCeeeecCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI-GHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i-~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
.+++++.++|.+.| -+ .... ..-.+.|+.+++.+. -+++.-.. -+.++++.+.++|++++..+..
T Consensus 29 ~~a~Ali~gGi~~I-EI-------Tl~s----p~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~- 94 (211)
T COG0800 29 PLAKALIEGGIPAI-EI-------TLRT----PAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL- 94 (211)
T ss_pred HHHHHHHHcCCCeE-EE-------ecCC----CCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC-
Confidence 56999999999998 22 1111 111567777777765 34443222 2557888999999999975443
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
.+++++.... .+++++.++.|+.|+..+.+.|++.++++.- ..++
T Consensus 95 -~~ev~~~a~~--~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg------------------------------- 140 (211)
T COG0800 95 -NPEVAKAANR--YGIPYIPGVATPTEIMAALELGASALKFFPAEVVGG------------------------------- 140 (211)
T ss_pred -CHHHHHHHHh--CCCcccCCCCCHHHHHHHHHcChhheeecCccccCc-------------------------------
Confidence 3566666654 5699999999999999999999999998722 2211
Q ss_pred ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..+++.++- ..++++ +..||| +++|+..++.+|+.+|.+||.++..
T Consensus 141 ------~~~~ka~~gP~~~v~~--~pTGGV-s~~N~~~yla~gv~avG~Gs~l~~~ 187 (211)
T COG0800 141 ------PAMLKALAGPFPQVRF--CPTGGV-SLDNAADYLAAGVVAVGLGSWLVPK 187 (211)
T ss_pred ------HHHHHHHcCCCCCCeE--eecCCC-CHHHHHHHHhCCceEEecCccccCh
Confidence 112222222 124566 567999 5999999999999999999999964
No 136
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.96 E-value=5.2e-08 Score=89.13 Aligned_cols=194 Identities=21% Similarity=0.241 Sum_probs=116.4
Q ss_pred ccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec--cc--c
Q 037779 28 VGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA--RI--G 102 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd--~i--~ 102 (310)
+++..-|..|......++ +.++.+.++|++++ .++ +. . ....... ...+++++... .. +
T Consensus 21 ~aiDh~~l~gp~~~~~~~~~~~~~a~~~~~~~v-~~~-----p~-~--------~~~~~~~-~~~~~~~~~~~~~~~~~g 84 (258)
T TIGR01949 21 VPMDHGVSNGPIKGLVDIRKTVNEVAEGGADAV-LLH-----KG-I--------VRRGHRG-YGKDVGLIIHLSASTSLS 84 (258)
T ss_pred EECCCccccCCCCCcCCHHHHHHHHHhcCCCEE-EeC-----cc-h--------hhhcccc-cCCCCcEEEEEcCCCCCC
Confidence 444444444544444554 57999999999998 332 10 0 1111111 12344444432 11 1
Q ss_pred -------chHHHHHHHHcCCCeeeec-C--CCChhHHHHHH---Hh--cCCCCcEEeec---------CC---HHH-HHH
Q 037779 103 -------HFVEAQILEAIGVDYVDES-E--VLTPADEENHI---NK--HNFRVPFVCGC---------RN---LGE-SLR 154 (310)
Q Consensus 103 -------~~~~~~~~~~aGad~v~~~-~--~~~~~~~~~~~---~~--~~~~l~v~~~v---------~t---~~e-a~~ 154 (310)
....++.+.+.||+.|... . ..+..+..+.+ .+ +..++++++.. .+ ..+ ++.
T Consensus 85 ~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~ 164 (258)
T TIGR01949 85 PDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARL 164 (258)
T ss_pred CCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHH
Confidence 1134677888999987622 1 11112222222 22 23455555421 12 223 345
Q ss_pred HHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCC-
Q 037779 155 RIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVA- 233 (310)
Q Consensus 155 a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~- 233 (310)
+.+.|+|||++. +. .+.+.++.+.+..++||+ +.|||+
T Consensus 165 a~~~GADyikt~---~~------------------------------------~~~~~l~~~~~~~~iPVv--a~GGi~~ 203 (258)
T TIGR01949 165 GAELGADIVKTP---YT------------------------------------GDIDSFRDVVKGCPAPVV--VAGGPKT 203 (258)
T ss_pred HHHHCCCEEecc---CC------------------------------------CCHHHHHHHHHhCCCcEE--EecCCCC
Confidence 567899999874 11 124456666665678995 469997
Q ss_pred -C----HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCCh
Q 037779 234 -T----PADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDP 278 (310)
Q Consensus 234 -t----~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~ 278 (310)
| .+++.+++++|++|+.+|+.|++++||.+++++|+..++....+
T Consensus 204 ~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~~~~~ 253 (258)
T TIGR01949 204 NSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHENADV 253 (258)
T ss_pred CCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhCCCCH
Confidence 4 66778888999999999999999999999999999999877654
No 137
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.96 E-value=6.9e-08 Score=90.21 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=110.0
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-ch----HHHHHHHHcCCCeee
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HF----VEAQILEAIGVDYVD 119 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~----~~~~~~~~aGad~v~ 119 (310)
..+++.+.+.|+... + .... ...++.+++. ..-|+.++.+.. +. +.++.+.+.|++.+.
T Consensus 84 ~~la~aa~~~g~~~~--~----~~~~-------~~~~~~i~~~---~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~ 147 (299)
T cd02809 84 LATARAAAAAGIPFT--L----STVS-------TTSLEEVAAA---APGPRWFQLYVPRDREITEDLLRRAEAAGYKALV 147 (299)
T ss_pred HHHHHHHHHcCCCEE--e----cCCC-------cCCHHHHHHh---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEE
Confidence 578999999998764 1 1111 1125555444 336777776543 21 244566778999987
Q ss_pred ecCCCCh------hHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccc
Q 037779 120 ESEVLTP------ADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 120 ~~~~~~~------~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
.+-..+. .+.++.++++ .++++++. +.+.++++++.+.|+|+|.+++..+.. +.
T Consensus 148 l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~------------------~~ 208 (299)
T cd02809 148 LTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ------------------LD 208 (299)
T ss_pred EecCCCCCCCCCCHHHHHHHHHh-cCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC------------------CC
Confidence 4322122 2556666553 34666654 789999999999999999997543210 00
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
. -..+++.+..+.+.. ++|| |++|||.++.|+.+++.+|||+|++|+.++.+
T Consensus 209 ~------------g~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~ 262 (299)
T cd02809 209 G------------APATIDALPEIVAAVGGRIEV--LLDGGIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred C------------CcCHHHHHHHHHHHhcCCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 0 123566777776543 5898 78999999999999999999999999988864
No 138
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.96 E-value=8.8e-08 Score=83.68 Aligned_cols=185 Identities=23% Similarity=0.268 Sum_probs=119.7
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec----
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES---- 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~---- 121 (310)
.++++...+||+.+ + +.+ ++++++.++..+++||.+... ..+..-.+..+|||.|-+-
T Consensus 31 ~i~~AA~~ggAt~v-D-------IAa--------dp~LV~~~~~~s~lPICVSaV--ep~~f~~aV~AGAdliEIGNfDs 92 (242)
T PF04481_consen 31 AIVKAAEIGGATFV-D-------IAA--------DPELVKLAKSLSNLPICVSAV--EPELFVAAVKAGADLIEIGNFDS 92 (242)
T ss_pred HHHHHHHccCCceE-E-------ecC--------CHHHHHHHHHhCCCCeEeecC--CHHHHHHHHHhCCCEEEecchHH
Confidence 67899999999987 3 432 389999999999999988644 2345556778999998732
Q ss_pred -----CCCChhHHHHHHHh---cCCCCcEEeec-CCHH---H---HHHHHHhCCCEEEEecCCCC-CchHHHHHHHHHhh
Q 037779 122 -----EVLTPADEENHINK---HNFRVPFVCGC-RNLG---E---SLRRIREGAAMIRTKGEAGT-GNIVEAVRHVRSVM 185 (310)
Q Consensus 122 -----~~~~~~~~~~~~~~---~~~~l~v~~~v-~t~~---e---a~~a~~~Gad~I~v~g~~~~-~~~~~~~~~~~~~~ 185 (310)
..++.+++....++ .-++.++-+.+ |++. + +....+.|+|+|-+.|-.-. +.....+
T Consensus 93 FY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~l------- 165 (242)
T PF04481_consen 93 FYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGIL------- 165 (242)
T ss_pred HHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchH-------
Confidence 12344455444433 33565555543 4322 2 33445689999987643111 1000000
Q ss_pred cceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 037779 186 GDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 186 ~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~ 265 (310)
++++.+ .+...-...+.+..++|| ++++|| |.-.+..++.+||.||.|||++-+-.|...|.
T Consensus 166 ------------glIeka---apTLAaay~ISr~v~iPV--lcASGl-S~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMv 227 (242)
T PF04481_consen 166 ------------GLIEKA---APTLAAAYAISRAVSIPV--LCASGL-SAVTAPMAIAAGASGVGVGSAVNRLNDEVAMV 227 (242)
T ss_pred ------------HHHHHH---hHHHHHHHHHHhccCCce--EeccCc-chhhHHHHHHcCCcccchhHHhhhcccHHHHH
Confidence 000000 112334455666678999 679999 57899999999999999999999999988776
Q ss_pred HHHHHHHH
Q 037779 266 RAIVQAVT 273 (310)
Q Consensus 266 ~~~~~~~~ 273 (310)
...++..+
T Consensus 228 a~vr~l~~ 235 (242)
T PF04481_consen 228 AAVRSLVE 235 (242)
T ss_pred HHHHHHHH
Confidence 65555443
No 139
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.95 E-value=2.3e-08 Score=90.14 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHHHHHHhh---cCcceEeeccccchHHHHHHHHcCCCeee
Q 037779 46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLIKQIKSS---VTIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i~~i~~~---~~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
+.++.+.+ +++.| +|| .||.. .+...|+.++.+++.+.++.+. .++||++|.+.++.
T Consensus 89 ~aa~~~~~-~~~~i-elN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~--------------- 151 (233)
T cd02911 89 NAAALVAK-NAAIL-EINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD--------------- 151 (233)
T ss_pred HHHHHHhh-cCCEE-EEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC---------------
Confidence 44666666 46776 898 55543 2333478888888776554322 58999999876520
Q ss_pred ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhH
Q 037779 120 ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 199 (310)
.+ +.+-++.+.+.|+|++-+... +.+
T Consensus 152 -------~~-------------------~~~la~~l~~aG~d~ihv~~~-~~g--------------------------- 177 (233)
T cd02911 152 -------VD-------------------DEELARLIEKAGADIIHVDAM-DPG--------------------------- 177 (233)
T ss_pred -------cC-------------------HHHHHHHHHHhCCCEEEECcC-CCC---------------------------
Confidence 00 011122333456665433210 100
Q ss_pred HhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 200 ~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa 254 (310)
...+++.++.++ .++|| |++|||.|++++.+++++|||+|++|++
T Consensus 178 ------~~ad~~~I~~i~--~~ipV--IgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 178 ------NHADLKKIRDIS--TELFI--IGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred ------CCCcHHHHHHhc--CCCEE--EEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 122456666665 46898 6799999999999999999999999999
No 140
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.94 E-value=2.3e-08 Score=95.75 Aligned_cols=190 Identities=24% Similarity=0.318 Sum_probs=113.5
Q ss_pred CccccCCCHHHHHHHHHcCCcEEEec------ccccchhhh-cCCC-------------CCCCChHH----HHHHHhhcC
Q 037779 37 GVIMDVVTPEQARIAEEAGACAVMAL------ERVPADIRA-QGGV-------------ARMSDPQL----IKQIKSSVT 92 (310)
Q Consensus 37 g~i~~~~~~~~a~~~~~~Ga~~I~~l------~~~~~d~r~-~~G~-------------~~~~~~~~----i~~i~~~~~ 92 (310)
+.|..+.+++++..+.++|+-.+... +..+.+.+. ..+. ....++++ ++++++. .
T Consensus 53 a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~-~ 131 (368)
T PRK08649 53 SPMDAVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDA-G 131 (368)
T ss_pred cCCcccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhC-e
Confidence 56777888999999999999655331 100111000 0000 00011222 2333332 3
Q ss_pred cceEeecccc---chHHHHHHHHcCCCeeeecC---------C-CChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHh
Q 037779 93 IPVMAKARIG---HFVEAQILEAIGVDYVDESE---------V-LTPADEENHINKHNFRVPFVC-GCRNLGESLRRIRE 158 (310)
Q Consensus 93 lPv~~kd~i~---~~~~~~~~~~aGad~v~~~~---------~-~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~ 158 (310)
+++ +.++. ..+.++.+.++|+|.+..+. . ..+..+.+.+++ .++++++ .+.|.++++++.+.
T Consensus 132 V~v--~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~--~~ipVIaG~V~t~e~A~~l~~a 207 (368)
T PRK08649 132 VIV--AVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE--LDVPVIVGGCVTYTTALHLMRT 207 (368)
T ss_pred EEE--EEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH--CCCCEEEeCCCCHHHHHHHHHc
Confidence 444 33332 33667889999999987531 1 135566666654 4688888 79999999999999
Q ss_pred CCCEEEEecCCCC-CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHHH--------hc--CCCCEEE
Q 037779 159 GAAMIRTKGEAGT-GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQTK--------QL--GRLPVVH 226 (310)
Q Consensus 159 Gad~I~v~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~--------~~--~~iPVv~ 226 (310)
|||.|.+. ...+ .+ .+... .++..+ ...+..+. +. .++||
T Consensus 208 GAD~V~VG-~G~Gs~~------------------~t~~~-------~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpV-- 259 (368)
T PRK08649 208 GAAGVLVG-IGPGAAC------------------TSRGV-------LGIGVPMATAIADVAAARRDYLDETGGRYVHV-- 259 (368)
T ss_pred CCCEEEEC-CCCCcCC------------------CCccc-------CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeE--
Confidence 99999884 2211 11 00000 011111 11122211 11 14899
Q ss_pred EccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 227 ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
||+|||.++.|+.+++.+|||+|++||.|..+.
T Consensus 260 IAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~ 292 (368)
T PRK08649 260 IADGGIGTSGDIAKAIACGADAVMLGSPLARAA 292 (368)
T ss_pred EEeCCCCCHHHHHHHHHcCCCeecccchhcccc
Confidence 789999999999999999999999999999854
No 141
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.93 E-value=1.8e-08 Score=99.26 Aligned_cols=129 Identities=20% Similarity=0.286 Sum_probs=91.6
Q ss_pred hHHHHHHHHcCCCeeeec----CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHH
Q 037779 104 FVEAQILEAIGVDYVDES----EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEA 177 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~~~----~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~ 177 (310)
.+.++.+.++|+|.|.+. +.....+.++.++++.+++++++ ++-|.++++.+.++|+|+|.+. |+..+...
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t--- 302 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTT--- 302 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCcc---
Confidence 467788899999998732 22234566677776667888888 6999999999999999999875 44321110
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
+.+. +++. ....+..+.+ ..++|| |++|||.++.|+.+++++||++|++||
T Consensus 303 -----------~~~~------------~~g~p~~~~i~~~~~~~~~~~vpv--iadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 303 -----------RIVA------------GVGVPQITAVYDVAEYAAQSGIPV--IADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred -----------ceec------------CCCccHHHHHHHHHHHHhhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 0000 1111 2233333332 246898 789999999999999999999999999
Q ss_pred ccccCCC
Q 037779 254 GVFKSGD 260 (310)
Q Consensus 254 ai~~~~d 260 (310)
.|..++.
T Consensus 358 ~~a~~~e 364 (450)
T TIGR01302 358 LLAGTTE 364 (450)
T ss_pred hhhcCCc
Confidence 9998754
No 142
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.92 E-value=3.6e-08 Score=88.17 Aligned_cols=148 Identities=28% Similarity=0.446 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHH----HHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQL----IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~----i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.++.+.++|+++| .+| .+|.. .+...|+....+++. ++++++.+++|+.++...++.
T Consensus 71 ~aa~~~~~aG~d~i-eln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~-------------- 135 (231)
T cd02801 71 EAAKIVEELGADGI-DLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD-------------- 135 (231)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------------
Confidence 56888888999998 777 33321 111124444555554 455666667888888665420
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 198 (310)
. ..+..+ -++...+.|+|++.+++..... .+
T Consensus 136 ----~--~~~~~~-------------------~~~~l~~~Gvd~i~v~~~~~~~-------------------~~----- 166 (231)
T cd02801 136 ----D--EEETLE-------------------LAKALEDAGASALTVHGRTREQ-------------------RY----- 166 (231)
T ss_pred ----C--chHHHH-------------------HHHHHHHhCCCEEEECCCCHHH-------------------cC-----
Confidence 0 011111 1223345578888776431100 00
Q ss_pred HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHH
Q 037779 199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~ 265 (310)
.....++.++.+++..++|| +++|||.+++++.++++. |+|+|++|++++..++....+
T Consensus 167 ------~~~~~~~~~~~i~~~~~ipv--i~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~ 226 (231)
T cd02801 167 ------SGPADWDYIAEIKEAVSIPV--IANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI 226 (231)
T ss_pred ------CCCCCHHHHHHHHhCCCCeE--EEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence 01235777788888778999 679999999999999997 899999999999977665444
No 143
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.89 E-value=1.7e-08 Score=99.68 Aligned_cols=132 Identities=22% Similarity=0.292 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCCeeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779 105 VEAQILEAIGVDYVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR 179 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~ 179 (310)
+.++.+.++|+|.|.+. +. ....+.++.+++..++++++++ +-|.++++.+.++|+|+|.+.+-.++-..
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~t----- 302 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCT----- 302 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCcccc-----
Confidence 67788899999998732 22 2234566677766678999998 99999999999999999998622111100
Q ss_pred HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.+..... +...+..+..+...+. .+|| ||+|||+++.|+.+++.+||++|++|+.|..+.
T Consensus 303 --------tr~~~~~g~-------~~~~a~~~~~~~~~~~-~~~v--iadGgi~~~~di~kala~GA~~vm~g~~~ag~~ 364 (475)
T TIGR01303 303 --------TRMMTGVGR-------PQFSAVLECAAEARKL-GGHV--WADGGVRHPRDVALALAAGASNVMVGSWFAGTY 364 (475)
T ss_pred --------CccccCCCC-------chHHHHHHHHHHHHHc-CCcE--EEeCCCCCHHHHHHHHHcCCCEEeechhhcccc
Confidence 011111100 0112234444444443 6899 789999999999999999999999999998865
No 144
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.89 E-value=3.5e-07 Score=84.62 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=121.4
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
..+++++.+...|.++. +...++ .|.. .-...++...+...+||.++ |.-.+++.++.+.+.|.+.|-.. ..+
T Consensus 34 vi~aAe~~~~Pvii~~~--~~~~~~-~~~~--~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~ 108 (281)
T PRK06806 34 AIKAAEELNSPIILQIA--EVRLNH-SPLH--LIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHL 108 (281)
T ss_pred HHHHHHHhCCCEEEEcC--cchhcc-CChH--HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCC
Confidence 47777788888775551 111111 1110 00134455566678999886 33335577788889999998732 223
Q ss_pred ChhHH-------HHHHHhcCC------C-Cc--------EEeecCCHHHHHHHHH-hCCCEEEEe-cCCCCCchHHHHHH
Q 037779 125 TPADE-------ENHINKHNF------R-VP--------FVCGCRNLGESLRRIR-EGAAMIRTK-GEAGTGNIVEAVRH 180 (310)
Q Consensus 125 ~~~~~-------~~~~~~~~~------~-l~--------v~~~v~t~~ea~~a~~-~Gad~I~v~-g~~~~~~~~~~~~~ 180 (310)
+..+. .+.+++.+. + +. +..+++|++|+.++.+ .|+|++.+. |+.++..
T Consensus 109 ~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~------- 181 (281)
T PRK06806 109 PLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMY------- 181 (281)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCC-------
Confidence 33332 233333321 0 11 2345789999999874 699999984 5544321
Q ss_pred HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
+ . ...-.++.++.+.+..++|++++-++|| +.+++.++++.|+++|-|+|.|+. +
T Consensus 182 -----------~--~---------~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~--a 236 (281)
T PRK06806 182 -----------N--G---------DPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFN--S 236 (281)
T ss_pred -----------C--C---------CCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHH--H
Confidence 0 0 0123688899998888899988733399 699999999999999999999998 5
Q ss_pred HHHHHHHHHHH
Q 037779 261 PVRRARAIVQA 271 (310)
Q Consensus 261 p~~~~~~~~~~ 271 (310)
+.+.++++.+.
T Consensus 237 ~~~a~~~~~~~ 247 (281)
T PRK06806 237 VITAVNNLVLN 247 (281)
T ss_pred HHHHHHHHHHh
Confidence 77777777643
No 145
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.88 E-value=2.5e-08 Score=93.13 Aligned_cols=181 Identities=23% Similarity=0.306 Sum_probs=107.1
Q ss_pred HHHHHHHHcC-CcEEEecc-cccchhhhcCCCCCCCChHH----HHHHHhhcCcceEeeccccc---hHHHHHHHHcCCC
Q 037779 46 EQARIAEEAG-ACAVMALE-RVPADIRAQGGVARMSDPQL----IKQIKSSVTIPVMAKARIGH---FVEAQILEAIGVD 116 (310)
Q Consensus 46 ~~a~~~~~~G-a~~I~~l~-~~~~d~r~~~G~~~~~~~~~----i~~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad 116 (310)
+.|+.+.++| +++| .+| .+|... .+|.....+++. ++++++.+++||++|..... .+.++.+.++|+|
T Consensus 108 ~~a~~~~~aG~~D~i-ElN~~cP~~~--~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d 184 (301)
T PRK07259 108 EVAEKLSKAPNVDAI-ELNISCPNVK--HGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGAD 184 (301)
T ss_pred HHHHHHhccCCcCEE-EEECCCCCCC--CCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCC
Confidence 5688888998 9998 787 565421 123333344444 55667777899999865431 1335667778888
Q ss_pred eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779 117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
.+....... +..+ +.++.. .........+++.
T Consensus 185 ~i~~~nt~~-------------g~~~--~~~~~~----------~~~~~~~gg~sg~----------------------- 216 (301)
T PRK07259 185 GLSLINTLK-------------GMAI--DIKTRK----------PILANVTGGLSGP----------------------- 216 (301)
T ss_pred EEEEEcccc-------------cccc--ccccCc----------eeecCCcCccCCc-----------------------
Confidence 875322100 0000 000000 0000000001110
Q ss_pred hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779 197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS 276 (310)
Q Consensus 197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~ 276 (310)
. ......+.++.+++..++|| |+.|||.|++++.+++++|||+|++||+++..++ ..+.+.+.++.|.
T Consensus 217 -~------~~p~~l~~v~~i~~~~~ipv--i~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~---~~~~i~~~l~~~~ 284 (301)
T PRK07259 217 -A------IKPIALRMVYQVYQAVDIPI--IGMGGISSAEDAIEFIMAGASAVQVGTANFYDPY---AFPKIIEGLEAYL 284 (301)
T ss_pred -C------cccccHHHHHHHHHhCCCCE--EEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcH---HHHHHHHHHHHHH
Confidence 0 01124667778877778999 6789999999999999999999999999999443 4455566666655
Q ss_pred ChhhHHhhhhccC
Q 037779 277 DPDVLAEVSCGLG 289 (310)
Q Consensus 277 ~~~~~~~~~~~~~ 289 (310)
....+.++.+..|
T Consensus 285 ~~~g~~~i~~~~g 297 (301)
T PRK07259 285 DKYGIKSIEEIVG 297 (301)
T ss_pred HHcCCCCHHHHhC
Confidence 5555555554443
No 146
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.86 E-value=1.6e-07 Score=88.09 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH-HHHHHhhc--CcceEeecccc--chHHHHHHHHcC--
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL-IKQIKSSV--TIPVMAKARIG--HFVEAQILEAIG-- 114 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~-i~~i~~~~--~lPv~~kd~i~--~~~~~~~~~~aG-- 114 (310)
..+.++|+.+.+.|...+ .+ + +. ++. ...+++.. ++++.+..... +.+.+..+.++|
T Consensus 45 ~in~~LA~~a~~~G~~~i-~h-------K-~~-------~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYI-MH-------R-FD-------EESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALT 108 (321)
T ss_pred hhhHHHHHHHHHcCCEEE-Ee-------c-CC-------HHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCC
Confidence 455689999999988775 22 1 11 222 22233322 34333332222 235667778888
Q ss_pred CCeeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcce
Q 037779 115 VDYVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDI 188 (310)
Q Consensus 115 ad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~ 188 (310)
+|+|... .. ....+.++.+++..+...++.. +-|.+.++.+.+.|+|.|.+. |+...-..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~t-------------- 174 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCIT-------------- 174 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccc--------------
Confidence 7987632 22 2233456666665555667776 889999999999999999886 44322100
Q ss_pred ecccccCchhHHhhhccCC-CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 189 RVLRNMDDDEVFTFAKNIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
+.... .+.. +....+..+.+..++|| |+.|||.+..|+.+++.+|||+|++|+.|..++
T Consensus 175 r~~~g----------~g~~~~~l~ai~ev~~a~~~pV--IadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 175 KIKTG----------FGTGGWQLAALRWCAKAARKPI--IADGGIRTHGDIAKSIRFGASMVMIGSLFAGHE 234 (321)
T ss_pred eeeec----------cCCCchHHHHHHHHHHhcCCeE--EEECCcCcHHHHHHHHHcCCCEEeechhhcCcc
Confidence 00000 0111 11235556666667898 789999999999999999999999999998765
No 147
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.86 E-value=7e-08 Score=89.46 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=45.1
Q ss_pred cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-CCHHHH
Q 037779 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-GDPVRR 264 (310)
Q Consensus 209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~-~dp~~~ 264 (310)
.++.++.+++.. ++|| |+.|||.|++++.+++++|||+|++||+++.. ++....
T Consensus 229 ~~~~v~~i~~~~~~~ipi--ia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~ 285 (289)
T cd02810 229 ALRWVARLAARLQLDIPI--IGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRK 285 (289)
T ss_pred HHHHHHHHHHhcCCCCCE--EEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHH
Confidence 356677777765 7899 67899999999999999999999999999986 665544
No 148
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.85 E-value=4.8e-08 Score=97.13 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCCeeeec--CCCC--hhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCC--CCchHH
Q 037779 105 VEAQILEAIGVDYVDES--EVLT--PADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAG--TGNIVE 176 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~--~~~~--~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~--~~~~~~ 176 (310)
+.++.+.++|+|.|.++ +.-+ ..+.++.++++.+++++++ .+-|.++++.+.++|+|+|.+. |+.. ++..
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~-- 321 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQE-- 321 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccch--
Confidence 56778888999999843 2222 2356777777666788888 6899999999999999999874 3322 2110
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
.. +++.| ...+..+ .+..++|+ |++|||.++.|+.+++++||++|++|
T Consensus 322 --------------~~------------~~g~p~~~ai~~~~~~~~~~~v~v--IadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 322 --------------VC------------AVGRPQASAVYHVARYARERGVPC--IADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred --------------hc------------cCCCChHHHHHHHHHHHhhcCCeE--EecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 00 11112 2222222 22246898 78999999999999999999999999
Q ss_pred cccccCC
Q 037779 253 SGVFKSG 259 (310)
Q Consensus 253 sai~~~~ 259 (310)
+.|..+.
T Consensus 374 ~~~a~~~ 380 (495)
T PTZ00314 374 SLLAGTE 380 (495)
T ss_pred chhcccc
Confidence 9999865
No 149
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.81 E-value=4e-07 Score=84.77 Aligned_cols=181 Identities=18% Similarity=0.260 Sum_probs=100.2
Q ss_pred hhcCcceEeeccccc---h-HHHHHHHHcCCCeeeec-----------CC-CChhH---HHHHHHhcCCCCcEEeecC--
Q 037779 89 SSVTIPVMAKARIGH---F-VEAQILEAIGVDYVDES-----------EV-LTPAD---EENHINKHNFRVPFVCGCR-- 147 (310)
Q Consensus 89 ~~~~lPv~~kd~i~~---~-~~~~~~~~aGad~v~~~-----------~~-~~~~~---~~~~~~~~~~~l~v~~~v~-- 147 (310)
+..+.|++++....+ + +.+..+.++|+|+|-.. .. .++.. +++.+++. .++++++.+.
T Consensus 86 ~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~~~ 164 (296)
T cd04740 86 REFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLTPN 164 (296)
T ss_pred hcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeCCC
Confidence 335689988755432 2 33456677899998531 01 12333 34444432 3677776543
Q ss_pred --CHHH-HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee-cccccCchhHHhhhccCCCcHHHHHHHHhcCCCC
Q 037779 148 --NLGE-SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR-VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLP 223 (310)
Q Consensus 148 --t~~e-a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iP 223 (310)
+..+ ++.+.+.|+|.+.+.+...+..+ +. +.....+. .....+. .......++.++.+++..++|
T Consensus 165 ~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~-~~----~~~~~~~~~~~gg~sg------~~~~~~~~~~i~~i~~~~~ip 233 (296)
T cd04740 165 VTDIVEIARAAEEAGADGLTLINTLKGMAI-DI----ETRKPILGNVTGGLSG------PAIKPIALRMVYQVYKAVEIP 233 (296)
T ss_pred chhHHHHHHHHHHcCCCEEEEECCCccccc-cc----ccCceeecCCcceecC------cccchHHHHHHHHHHHhcCCC
Confidence 2223 45567889998876533211100 00 00000000 0000000 000112357778887777899
Q ss_pred EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhh
Q 037779 224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSC 286 (310)
Q Consensus 224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (310)
| |+.|||.+++++.+++++|||+|++||+++..++.. +.+.+.+..+.....+..+.+
T Consensus 234 i--i~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~---~~i~~~l~~~~~~~g~~~~~~ 291 (296)
T cd04740 234 I--IGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAF---KEIIEGLEAYLDEEGIKSIEE 291 (296)
T ss_pred E--EEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHH---HHHHHHHHHHHHHcCCCCHHH
Confidence 9 678999999999999999999999999999955433 444455544444444444433
No 150
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.80 E-value=7.8e-07 Score=82.39 Aligned_cols=178 Identities=15% Similarity=0.215 Sum_probs=114.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEee-ccccchHHHHHHHHcCCCeeeec-C
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAK-ARIGHFVEAQILEAIGVDYVDES-E 122 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~ 122 (310)
...+++++.++..|.++. +...++.+|... -...++.+++..+ +||.++ |.-..++.++.+...|.+.|... .
T Consensus 31 avi~aAe~~~~PvIl~~~--~~~~~~~~~~~~--~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s 106 (282)
T TIGR01859 31 AILEAAEEENSPVIIQVS--EGAIKYMGGYKM--AVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGS 106 (282)
T ss_pred HHHHHHHHhCCCEEEEcC--cchhhccCcHHH--HHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCC
Confidence 346777777888775551 111222222100 1344566667777 999987 44445677888889999998733 2
Q ss_pred CCChhHHHHHHHh-----cCCCCcEE-----------------eecCCHHHHHHHHH-hCCCEEEEe-cCCCCCchHHHH
Q 037779 123 VLTPADEENHINK-----HNFRVPFV-----------------CGCRNLGESLRRIR-EGAAMIRTK-GEAGTGNIVEAV 178 (310)
Q Consensus 123 ~~~~~~~~~~~~~-----~~~~l~v~-----------------~~v~t~~ea~~a~~-~Gad~I~v~-g~~~~~~~~~~~ 178 (310)
.++..+.++..++ +..++.+- ...++++|+..+.+ .|+|++.+. |+.++..
T Consensus 107 ~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~----- 181 (282)
T TIGR01859 107 HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKY----- 181 (282)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCcccccc-----
Confidence 2343433322221 22232222 34779999999986 899999874 5543211
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++ . ..-+++.++.+++..++|++++-.+|| +.+++.+++++|+++|-++|.+..
T Consensus 182 -------------~~-~----------~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 182 -------------KG-E----------PGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred -------------CC-C----------CccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHHHH
Confidence 11 0 122578888888877899988733399 599999999999999999998875
No 151
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.76 E-value=1.5e-07 Score=93.66 Aligned_cols=126 Identities=20% Similarity=0.252 Sum_probs=88.7
Q ss_pred hHHHHHHHHcCCCeeeec--CC--CChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cC--CCCCchH
Q 037779 104 FVEAQILEAIGVDYVDES--EV--LTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GE--AGTGNIV 175 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~ 175 (310)
++.++.+.++|++.+... +. ....+.++.++++.+++++++ ++-|.++++.+.++|+|+|.+. |+ .+++
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~--- 306 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTT--- 306 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccc---
Confidence 467788899999987632 11 224455666666556777665 6999999999999999999874 22 1111
Q ss_pred HHHHHHHHhhcceecccccCchhHHhhhccCC-CcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V 251 (310)
+.+. +++ +..+.+..+.+. .++|| |++|||.++.|+.+++++|||+|++
T Consensus 307 -------------r~~~------------~~g~p~~~~~~~~~~~~~~~~~~v--iadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 307 -------------RIVA------------GVGVPQITAIADAAEAAKKYGIPV--IADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred -------------eeec------------CCCcCHHHHHHHHHHHhccCCCeE--EEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 1111 121 234555444442 35788 7899999999999999999999999
Q ss_pred ccccccCC
Q 037779 252 GSGVFKSG 259 (310)
Q Consensus 252 Gsai~~~~ 259 (310)
|++|.++.
T Consensus 360 G~~~a~~~ 367 (486)
T PRK05567 360 GSMLAGTE 367 (486)
T ss_pred Cccccccc
Confidence 99999865
No 152
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=98.75 E-value=7.2e-07 Score=80.69 Aligned_cols=192 Identities=23% Similarity=0.315 Sum_probs=114.5
Q ss_pred cccceeeecCC-ccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccc-
Q 037779 27 KVGLAQMLRGG-VIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARI- 101 (310)
Q Consensus 27 ~~~~~~~l~~g-~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i- 101 (310)
.+++.+-+..| .+....++ ..++.+.++|+++++.- +-.++.....+ ++|++++---
T Consensus 26 i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~------------------~G~~~~~~~~y~~dvplivkl~~~ 87 (265)
T COG1830 26 ILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMT------------------PGIARSVHRGYAHDVPLIVKLNGS 87 (265)
T ss_pred EEecccccccCCCcccccCHHHHHHHHHhcCCCEEEec------------------HhHHhhcCccccCCcCEEEEeccc
Confidence 35555555666 55566776 57899999999998421 12333333222 5777765211
Q ss_pred -------cc---hHHHHHHHHcCCCeeeec-----CC--CChhHHHHHHHh-cCCCCcEEeec------------CCHHH
Q 037779 102 -------GH---FVEAQILEAIGVDYVDES-----EV--LTPADEENHINK-HNFRVPFVCGC------------RNLGE 151 (310)
Q Consensus 102 -------~~---~~~~~~~~~aGad~v~~~-----~~--~~~~~~~~~~~~-~~~~l~v~~~v------------~t~~e 151 (310)
.+ .-.++.+..+|||+|-.+ .. ....++.+.... +..|+++++-+ ++++.
T Consensus 88 t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~ 167 (265)
T COG1830 88 TSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADL 167 (265)
T ss_pred cccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHH
Confidence 01 124556778999998622 11 111122222222 45677776622 22222
Q ss_pred ----HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE
Q 037779 152 ----SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 152 ----a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i 227 (310)
++.+.++|||+|+++ |++ +.+-.+.+.+.+.+||+
T Consensus 168 v~~aaRlaaelGADIiK~~---ytg------------------------------------~~e~F~~vv~~~~vpVv-- 206 (265)
T COG1830 168 VGYAARLAAELGADIIKTK---YTG------------------------------------DPESFRRVVAACGVPVV-- 206 (265)
T ss_pred HHHHHHHHHHhcCCeEeec---CCC------------------------------------ChHHHHHHHHhCCCCEE--
Confidence 234567788888875 111 12233444444558996
Q ss_pred ccCCCCC------HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC
Q 037779 228 AAGGVAT------PADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD 277 (310)
Q Consensus 228 a~GGI~t------~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~ 277 (310)
.+||=++ .+-...+++.|+.|+.+|+-|++.++|..+++++...++...+
T Consensus 207 iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe~~~ 262 (265)
T COG1830 207 IAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHENAS 262 (265)
T ss_pred EeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcCCCC
Confidence 3677655 2235677789999999999999999999999999888876554
No 153
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=98.73 E-value=5e-08 Score=93.76 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=114.9
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhh-hcCCCCCCCChHHHHHH----HhhcCcceEeecccc--c-hHHHHHHHHcCCC
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIR-AQGGVARMSDPQLIKQI----KSSVTIPVMAKARIG--H-FVEAQILEAIGVD 116 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r-~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~--~-~~~~~~~~~aGad 116 (310)
++++.++++|+++| .|| .+|.-.. ...|....++++.++++ ++.+++||++|.--. + ...++.+.++|||
T Consensus 131 ~~a~~~e~~GaD~i-ELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gad 209 (385)
T PLN02495 131 EIIERVEETGVDAL-EINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCE 209 (385)
T ss_pred HHHHHHHhcCCCEE-EEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCC
Confidence 67999999999998 788 5654221 11244445567777554 666789999995432 1 2456778889999
Q ss_pred eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccC
Q 037779 117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (310)
+|......... ..+++.+..-.. . .+ +.++. .++|. +++.
T Consensus 210 gi~liNT~~~~--------------~~ID~~t~~p~~-~--~~----~~~~~GGlSG~---alkp--------------- 250 (385)
T PLN02495 210 GVAAINTIMSV--------------MGINLDTLRPEP-C--VE----GYSTPGGYSSK---AVRP--------------- 250 (385)
T ss_pred EEEEecccCcc--------------cccccccCcccc-c--cC----CCCCCCCccch---hhhH---------------
Confidence 98732221100 001111100000 0 00 00011 01111 0000
Q ss_pred chhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779 196 DDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~ 273 (310)
+ .+...+++.+.+... .++|+ |+.|||.|.+|+.+.+.+||+.|.|+|+++... | ...+.+.+.+.
T Consensus 251 ---i-----Al~~v~~i~~~~~~~~~~~ipI--iGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~G-p-~vi~~i~~~L~ 318 (385)
T PLN02495 251 ---I-----ALAKVMAIAKMMKSEFPEDRSL--SGIGGVETGGDAAEFILLGADTVQVCTGVMMHG-Y-PLVKNLCAELQ 318 (385)
T ss_pred ---H-----HHHHHHHHHHHHhhhccCCCcE--EEECCCCCHHHHHHHHHhCCCceeEeeeeeecC-c-HHHHHHHHHHH
Confidence 0 001123344444321 14789 567999999999999999999999999999842 2 45677778888
Q ss_pred cCCChhhHHhhhhccCCceec
Q 037779 274 NYSDPDVLAEVSCGLGEAMVG 294 (310)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~ 294 (310)
+|.+...+..+.+..|....-
T Consensus 319 ~~m~~~G~~si~e~~G~~~~~ 339 (385)
T PLN02495 319 DFMKKHNFSSIEDFRGASLPY 339 (385)
T ss_pred HHHHHcCCCCHHHHhCcCCcc
Confidence 777777777777777655443
No 154
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.72 E-value=1.2e-06 Score=85.38 Aligned_cols=179 Identities=22% Similarity=0.228 Sum_probs=105.1
Q ss_pred Cccc-cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCc-c-eEeeccccc------hHHH
Q 037779 37 GVIM-DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTI-P-VMAKARIGH------FVEA 107 (310)
Q Consensus 37 g~i~-~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~l-P-v~~kd~i~~------~~~~ 107 (310)
|.|. .+.+++++.++.++|.-++.-....+.+. --+.|+++++.++- | +-++.+... ...+
T Consensus 24 gpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~----------l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v 93 (444)
T TIGR02814 24 GAMANGIASAELVIAMGRAGILGFFGAGGLPLEE----------VEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGLV 93 (444)
T ss_pred ccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHH----------HHHHHHHHHHhcCCCCceEEEecccCCCcccHHHHH
Confidence 4454 57889999999999988752110111000 02345667765544 6 777655421 1345
Q ss_pred HHHHHcCCCeeeecCCC--ChhHHHHHHHhcCC----------CCcEEeecC--------------------------CH
Q 037779 108 QILEAIGVDYVDESEVL--TPADEENHINKHNF----------RVPFVCGCR--------------------------NL 149 (310)
Q Consensus 108 ~~~~~aGad~v~~~~~~--~~~~~~~~~~~~~~----------~l~v~~~v~--------------------------t~ 149 (310)
+.+.+.|+..|..+..+ +|.. . .++.++. ...++..+. |+
T Consensus 94 ~l~l~~~V~~veasa~~~~~p~~-v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~it~ 171 (444)
T TIGR02814 94 DLLLRHGVRIVEASAFMQLTPAL-V-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRITR 171 (444)
T ss_pred HHHHHcCCCEEEeccccCCCcch-h-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCCCH
Confidence 77778999987643221 2221 2 2222221 023444433 44
Q ss_pred HHHHHHHHhC-CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH---hc------
Q 037779 150 GESLRRIREG-AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK---QL------ 219 (310)
Q Consensus 150 ~ea~~a~~~G-ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~---~~------ 219 (310)
+|++.+.+.| +|.|.+..+.+ ||. +......+++.+. +.
T Consensus 172 eEA~~a~~~g~aD~Ivve~EAG-GHt------------------------------g~~~~~~Llp~i~~lrd~v~~~~~ 220 (444)
T TIGR02814 172 EEAELARRVPVADDICVEADSG-GHT------------------------------DNRPLVVLLPAIIRLRDTLMRRYG 220 (444)
T ss_pred HHHHHHHhCCCCcEEEEeccCC-CCC------------------------------CCCcHHHHHHHHHHHHHHHhhccc
Confidence 5555566677 58888763333 331 0011234444442 11
Q ss_pred --CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 220 --GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 220 --~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
.++|| +++|||.|++.+..++.+||++|.+||.+.-+..
T Consensus 221 y~~~VpV--iAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~E 261 (444)
T TIGR02814 221 YRKPIRV--GAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVE 261 (444)
T ss_pred CCCCceE--EEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCcc
Confidence 15778 7899999999999999999999999999988653
No 155
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.71 E-value=2.7e-06 Score=79.21 Aligned_cols=190 Identities=15% Similarity=0.155 Sum_probs=122.1
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEee-ccccchHHHHHHHHcCCCeeeec-C
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-E 122 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~ 122 (310)
..+++++.+...|.++. +...++.+|... -...++.+.+.. ++||.++ |.- +++.++.+...|.+.|-.. .
T Consensus 34 vi~aAe~~~sPvIlq~s--~~~~~~~~~~~~--~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S 108 (293)
T PRK07315 34 ILRAAEAKKAPVLIQTS--MGAAKYMGGYKV--CKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS 108 (293)
T ss_pred HHHHHHHHCCCEEEEcC--ccHHhhcCcHHH--HHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC
Confidence 46777777888775551 111222222100 133455666666 7799887 333 5667788888999998732 2
Q ss_pred CCChhHHHH-------HHHhcCC------C-------CcEEeec-CCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHH
Q 037779 123 VLTPADEEN-------HINKHNF------R-------VPFVCGC-RNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRH 180 (310)
Q Consensus 123 ~~~~~~~~~-------~~~~~~~------~-------l~v~~~v-~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~ 180 (310)
.++.++.++ ..++.+. | ..+..++ ++++|++++.+.|+|++.+. |+.++-
T Consensus 109 ~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~-------- 180 (293)
T PRK07315 109 HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGP-------- 180 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeecccccccc--------
Confidence 234343332 2222221 1 1122334 89999999999999999886 554221
Q ss_pred HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
+++.++ .-.+++++.+.+.. ++|+|++-++|| +.+++.++++.|++.|-++|.|..
T Consensus 181 ----------y~t~~k----------~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~-- 237 (293)
T PRK07315 181 ----------YPENWE----------GLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI-- 237 (293)
T ss_pred ----------CCCCCC----------cCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH--
Confidence 111010 23578899998876 599988844449 599999999999999999999997
Q ss_pred CHHHHHHHHHHHH
Q 037779 260 DPVRRARAIVQAV 272 (310)
Q Consensus 260 dp~~~~~~~~~~~ 272 (310)
++.+.++++.+..
T Consensus 238 ~~~~~~~~~~~~~ 250 (293)
T PRK07315 238 AFANATRKFARDY 250 (293)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888877655
No 156
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.67 E-value=2e-07 Score=86.96 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=41.7
Q ss_pred HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHH
Q 037779 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVR 263 (310)
Q Consensus 210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~ 263 (310)
...++.+++.. ++|| |+.|||.|.+|+.+++.+|||+|+++|+++. .++...
T Consensus 230 l~~v~~~~~~~~~~ipI--ig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~ 284 (294)
T cd04741 230 LGNVRTFRRLLPSEIQI--IGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFA 284 (294)
T ss_pred HHHHHHHHHhcCCCCCE--EEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHH
Confidence 44556665554 5899 6789999999999999999999999999995 555443
No 157
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.65 E-value=2.4e-06 Score=76.79 Aligned_cols=61 Identities=30% Similarity=0.541 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHhcCCC-CEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779 207 AAPYDLVMQTKQLGRL-PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA 271 (310)
Q Consensus 207 ~~~~~l~~~i~~~~~i-PVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~ 271 (310)
..+.++++.+++..+. |+ +++|||++++++++++..|||+|+|||++.+ ||.+.++++++.
T Consensus 169 ~~~~e~I~~v~~~~~~~pv--ivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~ 230 (232)
T PRK04169 169 PVPPEMVKAVKKALDITPL--IYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA 230 (232)
T ss_pred CCCHHHHHHHHHhcCCCcE--EEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence 3468889999887777 99 6799999999999999999999999999997 566666666654
No 158
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.65 E-value=8.2e-07 Score=84.80 Aligned_cols=190 Identities=21% Similarity=0.243 Sum_probs=110.3
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccc-----hHHH-HHHHHcCCCe
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGH-----FVEA-QILEAIGVDY 117 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~-----~~~~-~~~~~aGad~ 117 (310)
+++|+.+.++|...- + .+.+...-+ ....+..+.+|+.. +.|++++.+... .+.+ +....++||+
T Consensus 80 ~~La~~a~~~G~~~~--~----Gs~~~~~~~--~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~ada 151 (352)
T PRK05437 80 RKLAEAAEELGIAMG--V----GSQRAALKD--PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADA 151 (352)
T ss_pred HHHHHHHHHcCCCeE--e----cccHhhccC--hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCc
Confidence 678999999985532 1 112211000 00123455667766 899999866631 2334 3444478888
Q ss_pred eeec-----CCC------Chh---HHHHHHHhcCCCCcEEee-c---CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779 118 VDES-----EVL------TPA---DEENHINKHNFRVPFVCG-C---RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR 179 (310)
Q Consensus 118 v~~~-----~~~------~~~---~~~~~~~~~~~~l~v~~~-v---~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~ 179 (310)
+.++ +.. ... +.++.+.+ ..++++++. + .+.++++.+.+.|+|+|.+.|..+++ +. .++
T Consensus 152 l~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~-~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~-~~-~ie 228 (352)
T PRK05437 152 LQIHLNPLQELVQPEGDRDFRGWLDNIAEIVS-ALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTS-WA-AIE 228 (352)
T ss_pred EEEeCccchhhcCCCCcccHHHHHHHHHHHHH-hhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCC-cc-chh
Confidence 6522 110 111 22333333 236777763 3 57889999999999999998764332 11 011
Q ss_pred HHHHhhcceecccccCchhHHhhhccCC-CcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..+..... ...++. ++. +..+.+..+.+. .++|| |++|||.++.|+.+++.+|||+|.+|++++.
T Consensus 229 ~~R~~~~~--~~~~~~---------~~g~pt~~~l~~i~~~~~~ipv--ia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~ 295 (352)
T PRK05437 229 NYRARDDR--LASYFA---------DWGIPTAQSLLEARSLLPDLPI--IASGGIRNGLDIAKALALGADAVGMAGPFLK 295 (352)
T ss_pred hhhhhccc--cccccc---------cccCCHHHHHHHHHHhcCCCeE--EEECCCCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence 11100000 000110 111 134555666665 47898 6799999999999999999999999999987
Q ss_pred C
Q 037779 258 S 258 (310)
Q Consensus 258 ~ 258 (310)
+
T Consensus 296 ~ 296 (352)
T PRK05437 296 A 296 (352)
T ss_pred H
Confidence 5
No 159
>PRK08227 autoinducer 2 aldolase; Validated
Probab=98.64 E-value=3.8e-06 Score=76.83 Aligned_cols=203 Identities=15% Similarity=0.151 Sum_probs=116.8
Q ss_pred CCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh-hcCcceEeec
Q 037779 22 SPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS-SVTIPVMAKA 99 (310)
Q Consensus 22 sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~-~~~lPv~~kd 99 (310)
|--....++..-+..|.+....++ +....+.+ |++++. + .+ -.++.... ..++|++++.
T Consensus 21 sGr~~iva~DHG~~~Gp~~gl~~~~~~~~~i~~-~~da~~-~--------~~---------G~~~~~~~~~~~~~lil~l 81 (264)
T PRK08227 21 TGRTVMLAFDHGYFQGPTTGLERIDINIAPLFP-YADVLM-C--------TR---------GILRSVVPPATNKPVVLRA 81 (264)
T ss_pred CCCEEEEECCCccccCCCccccChHHHHHHHhh-cCCEEE-e--------Ch---------hHHHhcccccCCCcEEEEE
Confidence 334444666666666666555553 45666666 799983 3 11 12332221 2356666652
Q ss_pred ccc-----------chHHHHHHHHcCCCeeeecCCC-C---h---hHHHHHHHh-cCCCCcEEeec------CCHHH---
Q 037779 100 RIG-----------HFVEAQILEAIGVDYVDESEVL-T---P---ADEENHINK-HNFRVPFVCGC------RNLGE--- 151 (310)
Q Consensus 100 ~i~-----------~~~~~~~~~~aGad~v~~~~~~-~---~---~~~~~~~~~-~~~~l~v~~~v------~t~~e--- 151 (310)
--. -+-.++.+...|||+|-.+-.. + . .++-+...+ +..|+++++-. .+..+
T Consensus 82 s~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia 161 (264)
T PRK08227 82 SGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFS 161 (264)
T ss_pred cCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHH
Confidence 110 0123566788999998632111 1 1 122222222 44667666521 11111
Q ss_pred --HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc
Q 037779 152 --SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA 229 (310)
Q Consensus 152 --a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~ 229 (310)
++.+.++|||+|++. +. -+-.+++.+.+++||+ | +
T Consensus 162 ~aaRiaaELGADiVK~~--------------------------y~---------------~~~f~~vv~a~~vPVv-i-a 198 (264)
T PRK08227 162 LATRIAAEMGAQIIKTY--------------------------YV---------------EEGFERITAGCPVPIV-I-A 198 (264)
T ss_pred HHHHHHHHHcCCEEecC--------------------------CC---------------HHHHHHHHHcCCCcEE-E-e
Confidence 334456677777664 10 0223444455678996 3 5
Q ss_pred CCCCC-HH----HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhh
Q 037779 230 GGVAT-PA----DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSC 286 (310)
Q Consensus 230 GGI~t-~~----di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (310)
||=.+ .+ .++.+++.||.||.+|+-+++.+||.++++++...++....+....++-+
T Consensus 199 GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~ 260 (264)
T PRK08227 199 GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHENETAKEAYELYL 260 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66553 22 35667789999999999999999999999999999998887765555443
No 160
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.61 E-value=1.6e-07 Score=87.58 Aligned_cols=182 Identities=21% Similarity=0.320 Sum_probs=108.3
Q ss_pred HHHHHHHHcC-CcEEEecc-cccchhhhcCCCCCCCChHHH----HHHHhhcCcceEeecccc--c-hHHHHHHHHcCCC
Q 037779 46 EQARIAEEAG-ACAVMALE-RVPADIRAQGGVARMSDPQLI----KQIKSSVTIPVMAKARIG--H-FVEAQILEAIGVD 116 (310)
Q Consensus 46 ~~a~~~~~~G-a~~I~~l~-~~~~d~r~~~G~~~~~~~~~i----~~i~~~~~lPv~~kd~i~--~-~~~~~~~~~aGad 116 (310)
+++..+.+.| ++++ .+| .+|.- .+|-...++++.+ +++++.+++||.+|.--. + .+.++.+.++|+|
T Consensus 113 d~~~~~~~~~~ad~i-elNiScPnt---~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 113 DYARLLEEAGDADAI-ELNISCPNT---PGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHHHHhcCCCCEE-EEEccCCCC---CChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence 6788899998 8988 788 55541 1122222245544 456667789999995432 1 2345677789999
Q ss_pred eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccC
Q 037779 117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (310)
++........ +..+... +. ++ +--++. ..+|.
T Consensus 189 gl~~~NT~~~------------~~~id~~--~~---------~~--~~~~~~GGLSG~---------------------- 221 (310)
T COG0167 189 GLIAINTTKS------------GMKIDLE--TK---------KP--VLANETGGLSGP---------------------- 221 (310)
T ss_pred EEEEEeeccc------------ccccccc--cc---------cc--ccCcCCCCcCcc----------------------
Confidence 9873221100 0000000 00 00 000000 01111
Q ss_pred chhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779 196 DDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~ 273 (310)
++ .....+.++.+.+.. ++|+ |..|||.|.+|+.+.+.+||+.|.|||+++... ...++++.+.+.
T Consensus 222 --~i------kp~al~~v~~l~~~~~~~ipI--IGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~G--p~i~~~I~~~l~ 289 (310)
T COG0167 222 --PL------KPIALRVVAELYKRLGGDIPI--IGVGGIETGEDALEFILAGASAVQVGTALIYKG--PGIVKEIIKGLA 289 (310)
T ss_pred --cc------hHHHHHHHHHHHHhcCCCCcE--EEecCcCcHHHHHHHHHcCCchheeeeeeeeeC--chHHHHHHHHHH
Confidence 00 012455666666653 5999 667999999999999999999999999999852 234566667777
Q ss_pred cCCChhhHHhhhhccCC
Q 037779 274 NYSDPDVLAEVSCGLGE 290 (310)
Q Consensus 274 ~~~~~~~~~~~~~~~~~ 290 (310)
.+.+...+..+.+..|.
T Consensus 290 ~~l~~~g~~si~d~iG~ 306 (310)
T COG0167 290 RWLEEKGFESIQDIIGS 306 (310)
T ss_pred HHHHHcCCCCHHHHhch
Confidence 66666666666655543
No 161
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.61 E-value=1.5e-06 Score=77.51 Aligned_cols=145 Identities=15% Similarity=0.173 Sum_probs=89.9
Q ss_pred HHHHHHHhcCCCCcEEeecCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc--eecccccCchhH--
Q 037779 128 DEENHINKHNFRVPFVCGCRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD--IRVLRNMDDDEV-- 199 (310)
Q Consensus 128 ~~~~~~~~~~~~l~v~~~v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~-- 199 (310)
..++.+++...+..++++.+..+ ++..+.+.|+|++.+|+......+..+++.+++.+.. ...++..+.+.+
T Consensus 45 ~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~ 124 (216)
T PRK13306 45 KAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQ 124 (216)
T ss_pred HHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHH
Confidence 44455655445667777754433 3334678999999999766544566777776654432 223333222211
Q ss_pred -Hh---------hhc-----cCCCcHHHHHHHHhcCCCCE-EEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 037779 200 -FT---------FAK-----NIAAPYDLVMQTKQLGRLPV-VHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVR 263 (310)
Q Consensus 200 -~~---------~~~-----~~~~~~~l~~~i~~~~~iPV-v~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~ 263 (310)
.+ .+. +.......+..+++...-.. + .+.||| +++.+....+.|+|.++|||+|++++||.+
T Consensus 125 ~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i-~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~ 202 (216)
T PRK13306 125 WRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKV-SVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAADPAA 202 (216)
T ss_pred HHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeE-EEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCCHHH
Confidence 00 001 11112223334444321122 3 458999 599998888899999999999999999999
Q ss_pred HHHHHHHHHHc
Q 037779 264 RARAIVQAVTN 274 (310)
Q Consensus 264 ~~~~~~~~~~~ 274 (310)
.++++++.++.
T Consensus 203 a~~~i~~~i~~ 213 (216)
T PRK13306 203 AARAFKDEIAK 213 (216)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 162
>PRK06852 aldolase; Validated
Probab=98.59 E-value=7.8e-06 Score=76.10 Aligned_cols=210 Identities=18% Similarity=0.146 Sum_probs=121.9
Q ss_pred cCCCccccccceeeecCCc--------cccCCCHH-HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779 20 KKSPFSVKVGLAQMLRGGV--------IMDVVTPE-QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS 90 (310)
Q Consensus 20 ~~sp~~~~~~~~~~l~~g~--------i~~~~~~~-~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~ 90 (310)
+.|--...+|+.+-+..|. +....+++ ..+.+.++|++++. + .+ -.++.....
T Consensus 28 ~~sGr~~ivp~DHG~~~Gp~~~~~~~~~~gl~dp~~~i~~~~~~g~dav~-~--------~~---------G~l~~~~~~ 89 (304)
T PRK06852 28 KGTGRLMLFAGDQKIEHLNDDFYGEGIAKDDADPEHLFRIASKAKIGVFA-T--------QL---------GLIARYGMD 89 (304)
T ss_pred CCCCCEEEEeccCCcccCCcccccccCCcccCCHHHHHHHHHhcCCCEEE-e--------CH---------HHHHhhccc
Confidence 3444555577777777777 77777775 79999999999983 3 11 133332221
Q ss_pred -cCcceEeecccc--------------chHHHHHHHHcC------CCeeeecCCC-C---h---hHHHHHHHh-cCCCCc
Q 037779 91 -VTIPVMAKARIG--------------HFVEAQILEAIG------VDYVDESEVL-T---P---ADEENHINK-HNFRVP 141 (310)
Q Consensus 91 -~~lPv~~kd~i~--------------~~~~~~~~~~aG------ad~v~~~~~~-~---~---~~~~~~~~~-~~~~l~ 141 (310)
.++|++++.--. -+-.++.+...| ||+|-.+-.. + . .++-+...+ +..|++
T Consensus 90 ~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlP 169 (304)
T PRK06852 90 YPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLI 169 (304)
T ss_pred cCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 256666651110 011245566777 7787632111 1 1 122222222 446777
Q ss_pred EEeec----------CCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC
Q 037779 142 FVCGC----------RNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA 207 (310)
Q Consensus 142 v~~~v----------~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
+++-+ ++++ -++.+.++|||+|++.-+ +. ...
T Consensus 170 ll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~---~~-------------------------------~~~ 215 (304)
T PRK06852 170 AVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYP---KK-------------------------------EGA 215 (304)
T ss_pred EEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCC---Cc-------------------------------CCC
Confidence 76522 1111 134456778888887511 00 001
Q ss_pred CcHHHHHHHHhcC-CCCEEEEccCCCC-CH----HHHHHHHH-cCCCEEEEccccccCCCH--HHHHHHHHHHHHcCCCh
Q 037779 208 APYDLVMQTKQLG-RLPVVHFAAGGVA-TP----ADAAMMMQ-LGCDGVFVGSGVFKSGDP--VRRARAIVQAVTNYSDP 278 (310)
Q Consensus 208 ~~~~l~~~i~~~~-~iPVv~ia~GGI~-t~----~di~~~~~-~GadgV~VGsai~~~~dp--~~~~~~~~~~~~~~~~~ 278 (310)
.+.+..+++.+.+ ++||+ | +||=. +. +.++.+++ .|+.|+++|+-+++.+|| .++++++...++....+
T Consensus 216 g~~e~f~~vv~~~g~vpVv-i-aGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~~s~ 293 (304)
T PRK06852 216 NPAELFKEAVLAAGRTKVV-C-AGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVEDKSV 293 (304)
T ss_pred CCHHHHHHHHHhCCCCcEE-E-eCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhCCCCH
Confidence 1223344455545 78985 3 56654 22 23556667 899999999999999999 99999999999888776
Q ss_pred hhHHh
Q 037779 279 DVLAE 283 (310)
Q Consensus 279 ~~~~~ 283 (310)
....+
T Consensus 294 ~eA~~ 298 (304)
T PRK06852 294 EEALK 298 (304)
T ss_pred HHHHH
Confidence 55433
No 163
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.59 E-value=1.5e-06 Score=75.16 Aligned_cols=179 Identities=21% Similarity=0.263 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCcEEEecc-cc-------cchhh-----hcCCCCCCCChHHHHHHHhh-cCcceEeecccc------chH
Q 037779 46 EQARIAEEAGACAVMALE-RV-------PADIR-----AQGGVARMSDPQLIKQIKSS-VTIPVMAKARIG------HFV 105 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~-------~~d~r-----~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~------~~~ 105 (310)
...+-+.++|++.| .|. |. |+-.. -..|....+-.+.+++.|.. +.+|++.....+ ...
T Consensus 36 kilkglq~gG~dII-ELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~ 114 (268)
T KOG4175|consen 36 KILKGLQSGGSDII-ELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN 114 (268)
T ss_pred HHHHHHhcCCcCeE-EecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHH
Confidence 56777888899877 453 11 11110 01133222334455666665 678998865543 234
Q ss_pred HHHHHHHcCCCeeeecCCCChhH---HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCC-CEEEEecCCC-CCchHHHHHH
Q 037779 106 EAQILEAIGVDYVDESEVLTPAD---EENHINKHNFRVPFVCGCRNLGESLRRIREGA-AMIRTKGEAG-TGNIVEAVRH 180 (310)
Q Consensus 106 ~~~~~~~aGad~v~~~~~~~~~~---~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Ga-d~I~v~g~~~-~~~~~~~~~~ 180 (310)
.+|.+..+||++.++.+. +|++ +.+++++|+..+..++...|.+|-..++..-+ .+|.+..+.+ +|.- +.+
T Consensus 115 ~iq~ak~aGanGfiivDl-PpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~-~sv-- 190 (268)
T KOG4175|consen 115 YIQVAKNAGANGFIIVDL-PPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGTR-ESV-- 190 (268)
T ss_pred HHHHHHhcCCCceEeccC-ChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEeccccccH-HHH--
Confidence 668889999999987765 4554 45666777777666666677776555554444 4665543332 2221 000
Q ss_pred HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+ ..-.+++.++++.. +.|+ .+..||+++|+..++-.- +|||+|||.|.+
T Consensus 191 --------------n-----------~~l~~L~qrvrk~t~dtPl--AVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 191 --------------N-----------EKLQSLLQRVRKATGDTPL--AVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred --------------H-----------HHHHHHHHHHHHhcCCCce--eEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 0 11356788888864 8898 568999999999999888 999999998875
No 164
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.55 E-value=3.5e-07 Score=87.11 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=44.2
Q ss_pred cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHHHH
Q 037779 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVRRA 265 (310)
Q Consensus 209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~~~ 265 (310)
.++.+..+++.. ++|| |+.|||.|++|+.+++.+|||+|++||+++. .++....+
T Consensus 275 ~l~~v~~l~~~~~~~ipI--ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i 332 (344)
T PRK05286 275 STEVIRRLYKELGGRLPI--IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEI 332 (344)
T ss_pred HHHHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHH
Confidence 455677777655 6899 6789999999999999999999999999975 46654433
No 165
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.53 E-value=1.3e-06 Score=87.00 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=84.7
Q ss_pred hHHHHHHHHcCCCeeeec--CCC--ChhHHHHHHHhcCCC-CcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCch
Q 037779 104 FVEAQILEAIGVDYVDES--EVL--TPADEENHINKHNFR-VPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNI 174 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~~~--~~~--~~~~~~~~~~~~~~~-l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~ 174 (310)
.+.++.+.++|+|.+.++ ..- ...+.++.++++.++ +.++++ +-|.++++.++++|||+|++. |+ .++..
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr- 322 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITR- 322 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccc-
Confidence 356788899999998743 111 123556667664443 677774 889999999999999999884 22 22221
Q ss_pred HHHHHHHHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHhc--------C-CCCEEEEccCCCCCHHHHHHHHHc
Q 037779 175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQL--------G-RLPVVHFAAGGVATPADAAMMMQL 244 (310)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~--------~-~iPVv~ia~GGI~t~~di~~~~~~ 244 (310)
... +.+. ....+..+.+. . ++|| |+.|||.+..|+.+++.+
T Consensus 323 ---------------~~~------------~~g~~~~~ai~~~~~a~~~~~~~~g~~~~v--iadgGir~~gdi~KAla~ 373 (502)
T PRK07107 323 ---------------EQK------------GIGRGQATALIEVAKARDEYFEETGVYIPI--CSDGGIVYDYHMTLALAM 373 (502)
T ss_pred ---------------ccc------------CCCccHHHHHHHHHHHHHHHHhhcCCcceE--EEcCCCCchhHHHHHHHc
Confidence 000 1111 12222222221 1 3898 779999999999999999
Q ss_pred CCCEEEEccccccCC
Q 037779 245 GCDGVFVGSGVFKSG 259 (310)
Q Consensus 245 GadgV~VGsai~~~~ 259 (310)
|||+|++|+.|..+.
T Consensus 374 GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 374 GADFIMLGRYFARFD 388 (502)
T ss_pred CCCeeeeChhhhccc
Confidence 999999999998854
No 166
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.52 E-value=6.3e-07 Score=84.80 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=42.7
Q ss_pred cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-CCHH
Q 037779 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-GDPV 262 (310)
Q Consensus 209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~-~dp~ 262 (310)
.++.+..+++.. ++|| |+.|||.|++|+.+++.+|||+|++||+++.. ++..
T Consensus 266 ~l~~v~~l~~~~~~~ipI--i~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~ 320 (327)
T cd04738 266 STEVLRELYKLTGGKIPI--IGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLV 320 (327)
T ss_pred HHHHHHHHHHHhCCCCcE--EEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHH
Confidence 356677777765 6899 67899999999999999999999999999763 5543
No 167
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.51 E-value=3.9e-06 Score=79.11 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=46.8
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~ 265 (310)
..+.++.+++..++|| ++.|||.+++++.++++. |+|.|++|++++..+|....+
T Consensus 269 ~~~~~~~ir~~~~iPV--i~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 269 FLELAEKIKKAVKIPV--IAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred hHHHHHHHHHHCCCCE--EEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHH
Confidence 4567777877778999 678999999999999998 899999999999988766554
No 168
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=98.48 E-value=1e-06 Score=83.56 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=37.1
Q ss_pred HHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 212 LVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 212 l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+..+.+ ..++|| |++|||.++.++.+++.+|||+|.+|++++.+
T Consensus 244 ~l~~~~~~~~~ipV--IasGGI~~~~di~kaLalGAd~V~igr~~L~~ 289 (333)
T TIGR02151 244 SLLEVRSDAPDAPI--IASGGLRTGLDVAKAIALGADAVGMARPFLKA 289 (333)
T ss_pred HHHHHHhcCCCCeE--EEECCCCCHHHHHHHHHhCCCeehhhHHHHHH
Confidence 3444444 346888 78999999999999999999999999999953
No 169
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.47 E-value=3.1e-07 Score=86.30 Aligned_cols=76 Identities=21% Similarity=0.196 Sum_probs=54.1
Q ss_pred HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhc
Q 037779 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCG 287 (310)
Q Consensus 210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (310)
...+..+.+.. ++|| |+.|||.|.+|+.+.+.+||+.|+++|+++... | ...+.+.+.+..|.+...+..+.+.
T Consensus 228 l~~v~~~~~~~~~~ipI--ig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~g-p-~~~~~i~~~L~~~l~~~g~~si~e~ 303 (310)
T PRK02506 228 LANVRAFYQRLNPSIQI--IGTGGVKTGRDAFEHILCGASMVQVGTALHKEG-P-AVFERLTKELKAIMAEKGYQSLEDF 303 (310)
T ss_pred HHHHHHHHHhcCCCCCE--EEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhC-h-HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34455554433 6899 678999999999999999999999999998732 2 3455566666666555555555554
Q ss_pred cC
Q 037779 288 LG 289 (310)
Q Consensus 288 ~~ 289 (310)
.|
T Consensus 304 ~G 305 (310)
T PRK02506 304 RG 305 (310)
T ss_pred hC
Confidence 44
No 170
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=98.47 E-value=9.7e-06 Score=71.96 Aligned_cols=46 Identities=28% Similarity=0.514 Sum_probs=40.6
Q ss_pred ccCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 228 AAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 228 a~GGI~t~~--di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
+.|||+ ++ ++..++++|+|.+++||+|++++||.+.++++++.++.
T Consensus 167 vdgGI~-~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 167 ISPGIG-AQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred EeCCcC-CCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 469996 54 59999999999999999999999999999999987753
No 171
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.46 E-value=2e-06 Score=82.03 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC
Q 037779 128 DEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA 207 (310)
Q Consensus 128 ~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
+.++.++++-....++-++-+.++++++.+.|+|.|.+.+..++. +.. ..
T Consensus 226 ~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrq------------------ld~------------~~ 275 (361)
T cd04736 226 QDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQ------------------LDD------------AI 275 (361)
T ss_pred HHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCC------------------CcC------------Cc
Confidence 345666664444556668999999999999999999887654421 100 12
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
.+.+.+..+.+..++|| |++|||.++.|+.+++.+||++|++|+.++.
T Consensus 276 ~~~~~L~ei~~~~~~~v--i~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 276 APIEALAEIVAATYKPV--LIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred cHHHHHHHHHHHhCCeE--EEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 34666667766556888 6799999999999999999999999999985
No 172
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.43 E-value=2.3e-05 Score=74.59 Aligned_cols=89 Identities=20% Similarity=0.404 Sum_probs=64.2
Q ss_pred CCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779 139 RVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~ 217 (310)
++++++ ++.+.++++++.+.|+|.|.+.+..++. +.. ...+.+.+..+.
T Consensus 213 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~------------------~d~------------~~~~~~~L~~i~ 262 (344)
T cd02922 213 KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQ------------------LDT------------APAPIEVLLEIR 262 (344)
T ss_pred CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCccc------------------CCC------------CCCHHHHHHHHH
Confidence 456555 6889999999999999999887654321 000 011233333333
Q ss_pred h----c-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 218 Q----L-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 218 ~----~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
+ . .++|| |++|||.+..|+.+++.+||++|.+|++++.+.
T Consensus 263 ~~~~~~~~~~~v--i~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l 307 (344)
T cd02922 263 KHCPEVFDKIEV--YVDGGVRRGTDVLKALCLGAKAVGLGRPFLYAL 307 (344)
T ss_pred HHHHHhCCCceE--EEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 2 1 25888 679999999999999999999999999998853
No 173
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.42 E-value=6.6e-06 Score=77.86 Aligned_cols=194 Identities=20% Similarity=0.210 Sum_probs=107.3
Q ss_pred CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeecccc-----chHHHH-HHHHcCCC
Q 037779 44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIG-----HFVEAQ-ILEAIGVD 116 (310)
Q Consensus 44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~-----~~~~~~-~~~~aGad 116 (310)
++++|+...+.|.-.- + .+.+.. .......+.++.+|.... .|++++.+.. .++.++ ....++||
T Consensus 71 n~~La~~a~~~g~~~~--~----Gs~~~~--~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~ad 142 (326)
T cd02811 71 NRNLAEAAEELGIAMG--V----GSQRAA--LEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEAD 142 (326)
T ss_pred HHHHHHHHHHcCCCeE--e----cCchhh--ccChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCC
Confidence 4688999999984321 1 011100 000001234556666654 9998886653 234443 33347888
Q ss_pred eeeecC----------CC-ChhHHHHHHHh--cCCCCcEEeec----CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779 117 YVDESE----------VL-TPADEENHINK--HNFRVPFVCGC----RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR 179 (310)
Q Consensus 117 ~v~~~~----------~~-~~~~~~~~~~~--~~~~l~v~~~v----~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~ 179 (310)
++.++- .. ....+.+.++. ...++++++.. .+.++++.+.+.|+|+|.+.|..++. +. ..+
T Consensus 143 alel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~-~~-~ie 220 (326)
T cd02811 143 ALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTS-WA-RVE 220 (326)
T ss_pred cEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCc-cc-ccc
Confidence 865221 00 11112233333 22467777742 67889999999999999998753332 10 000
Q ss_pred HHHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..+....+......+ .++.. ..+.+..+.+.. ++|| |++|||.++.|+.+++.+|||+|.+|++|++
T Consensus 221 ~~r~~~~~~~~~~~~---------~~~g~~t~~~l~~~~~~~~~ipI--iasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 221 NYRAKDSDQRLAEYF---------ADWGIPTAASLLEVRSALPDLPL--IASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred ccccccccccccccc---------ccccccHHHHHHHHHHHcCCCcE--EEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 000000000000000 01111 234555555544 7899 7799999999999999999999999998876
Q ss_pred C
Q 037779 258 S 258 (310)
Q Consensus 258 ~ 258 (310)
+
T Consensus 290 ~ 290 (326)
T cd02811 290 A 290 (326)
T ss_pred H
Confidence 4
No 174
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.41 E-value=3.1e-06 Score=80.93 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=71.1
Q ss_pred ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+.++ ++.+++. .++++++ ++.+.++++++.+.|+|.|.+.+..+. .+..
T Consensus 216 ~w~~-i~~l~~~-~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGr------------------q~~~---------- 265 (367)
T TIGR02708 216 SPRD-IEEIAGY-SGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGR------------------QLDG---------- 265 (367)
T ss_pred CHHH-HHHHHHh-cCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCcc------------------CCCC----------
Confidence 4433 4444442 3466666 578899999999999998877544321 1110
Q ss_pred ccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 204 KNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
...+++.+..+.+.. ++|| |++|||.+..|+.+++.+||++|++|+.++.+
T Consensus 266 --~~a~~~~L~ei~~av~~~i~v--i~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~ 318 (367)
T TIGR02708 266 --GPAAFDSLQEVAEAVDKRVPI--VFDSGVRRGQHVFKALASGADLVALGRPVIYG 318 (367)
T ss_pred --CCcHHHHHHHHHHHhCCCCcE--EeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 123466677776643 5899 67999999999999999999999999997774
No 175
>PLN02535 glycolate oxidase
Probab=98.40 E-value=3.5e-06 Score=80.47 Aligned_cols=100 Identities=23% Similarity=0.354 Sum_probs=71.7
Q ss_pred ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+.++ ++.+++. .++++++ ++-+.++++++.+.|+|.|.+.+..+.. +..
T Consensus 211 tW~~-i~~lr~~-~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~------------------~d~---------- 260 (364)
T PLN02535 211 SWKD-IEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ------------------LDY---------- 260 (364)
T ss_pred CHHH-HHHHHhc-cCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC------------------CCC----------
Confidence 4433 4445442 4577777 5889999999999999999887553210 000
Q ss_pred ccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 204 KNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
...+.+.+..+.+. .++|| |++|||.++.|+.+++.+||++|++|+.++.+
T Consensus 261 --~~~t~~~L~ev~~av~~~ipV--i~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~ 313 (364)
T PLN02535 261 --SPATISVLEEVVQAVGGRVPV--LLDGGVRRGTDVFKALALGAQAVLVGRPVIYG 313 (364)
T ss_pred --ChHHHHHHHHHHHHHhcCCCE--EeeCCCCCHHHHHHHHHcCCCEEEECHHHHhh
Confidence 01134555555543 26899 67999999999999999999999999999874
No 176
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.39 E-value=2.9e-06 Score=77.89 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=63.2
Q ss_pred hHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779 127 ADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205 (310)
Q Consensus 127 ~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
...++.+++ .+++..+.++++|.+|+..+.+.|+|||.+... + ++.
T Consensus 165 ~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~-~-------------------------~e~------- 211 (265)
T TIGR00078 165 EKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM-K-------------------------PEE------- 211 (265)
T ss_pred HHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC-C-------------------------HHH-------
Confidence 344555555 344688999999999999999999999998421 1 000
Q ss_pred CCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..+..+.++ ..+|+ .|.||| +++++.++.++|+|++.+ |+++.+
T Consensus 212 ---lk~~v~~~~--~~ipi--~AsGGI-~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 212 ---IKEAVQLLK--GRVLL--EASGGI-TLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred ---HHHHHHHhc--CCCcE--EEECCC-CHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 011122221 13788 567999 699999999999999999 556653
No 177
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.39 E-value=7.6e-06 Score=77.96 Aligned_cols=55 Identities=29% Similarity=0.306 Sum_probs=46.4
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~ 265 (310)
.+++.+.+++..++|| ++.|||.+++++.++++. ++|.|++|+.++..++....+
T Consensus 273 ~~~~~~~ik~~~~ipv--i~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~ 328 (343)
T cd04734 273 FLPLAARIKQAVDLPV--FHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKA 328 (343)
T ss_pred hHHHHHHHHHHcCCCE--EeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHH
Confidence 3667778888778999 678999999999999986 599999999999988765443
No 178
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=98.36 E-value=1.6e-05 Score=73.84 Aligned_cols=215 Identities=20% Similarity=0.249 Sum_probs=132.7
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcC-CCCCCCChHHHHHHHhhcCcceEeeccccc-----------hHHHHHHHH
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQG-GVARMSDPQLIKQIKSSVTIPVMAKARIGH-----------FVEAQILEA 112 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~-G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~-----------~~~~~~~~~ 112 (310)
.+++++|-..||+.++.||. |..|.+- |. .+-++.+++..+.+-+|+.+...|.+ .+-+..++.
T Consensus 272 V~Laq~Yyq~GADEv~FLNI--TsFRdcPl~D--~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFR 347 (541)
T KOG0623|consen 272 VDLAQQYYQDGADEVSFLNI--TSFRDCPLGD--LPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFR 347 (541)
T ss_pred HHHHHHHHhcCCceeEEEee--ccccCCCccc--ChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHh
Confidence 48899999999999988861 1112111 22 12245566666667789998655521 134566777
Q ss_pred cCCCeee-ecCCCChh-H------------HHHHHHhcCCCCcEEeecC-------CHHHH----HHHHHhCC---CEE-
Q 037779 113 IGVDYVD-ESEVLTPA-D------------EENHINKHNFRVPFVCGCR-------NLGES----LRRIREGA---AMI- 163 (310)
Q Consensus 113 aGad~v~-~~~~~~~~-~------------~~~~~~~~~~~l~v~~~v~-------t~~ea----~~a~~~Ga---d~I- 163 (310)
.|||.|. .++..... . -++.+++..-+.-+++++. .+++. .+....|+ .|+
T Consensus 348 SGADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE~YcW 427 (541)
T KOG0623|consen 348 SGADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGEEYCW 427 (541)
T ss_pred cCCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCceeeecCCccCcceEEEecCCCCCCceeEE
Confidence 9999987 33221111 1 1122222111233333331 11111 11111222 121
Q ss_pred ---EEe-cCCCCC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHH
Q 037779 164 ---RTK-GEAGTG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 164 ---~v~-g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di 238 (310)
.+. |+.+.. ...+.-+++..+++....+..++.|+. +.+.+.++++.++....||| ||++|-++|++.
T Consensus 428 YQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGs-----n~GyDieLv~lvkdsV~IPV--IASSGAG~P~HF 500 (541)
T KOG0623|consen 428 YQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGS-----NKGYDIELVKLVKDSVGIPV--IASSGAGTPDHF 500 (541)
T ss_pred EEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCC-----CCCcchhHHHHhhcccCCce--EecCCCCCcHHH
Confidence 122 221111 135777888889999888888887764 45678999999999889999 789999999999
Q ss_pred HHHHH-cCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 239 AMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 239 ~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
.++.+ ..||+.+....|.+.+-|.+-+++++.
T Consensus 501 eEvF~kT~adAaLaAGiFHR~e~~i~dVKEyL~ 533 (541)
T KOG0623|consen 501 EEVFEKTNADAALAAGIFHRKEVPIQDVKEYLQ 533 (541)
T ss_pred HHHHHhcCchhhhhccceecCccchHHHHHHHH
Confidence 99885 799999999999988877766666544
No 179
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.36 E-value=3.9e-06 Score=77.20 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=65.6
Q ss_pred hHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779 127 ADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205 (310)
Q Consensus 127 ~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
...++.+++ .+++..+.++++|.+|+..+.+.|+|||.+... +
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~-~----------------------------------- 212 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM-S----------------------------------- 212 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc-C-----------------------------------
Confidence 344455555 334678999999999999999999999998411 1
Q ss_pred CCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 206 IAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.++++.+.. ++|+ .|.||| +++++.++.++|+|++.+|+..+.++
T Consensus 213 ----~e~l~~~~~~~~~~ipi--~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a~ 261 (268)
T cd01572 213 ----PEELREAVALLKGRVLL--EASGGI-TLENIRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred ----HHHHHHHHHHcCCCCcE--EEECCC-CHHHHHHHHHcCCCEEEEEeeecCCC
Confidence 12222222221 5798 567999 69999999999999999999776543
No 180
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.35 E-value=5e-06 Score=76.71 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=64.5
Q ss_pred hhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 126 PADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+.++.+++ .+.+..+.++++|.+|+..+.+.|+|||.+.. .
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~--~---------------------------------- 217 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN--R---------------------------------- 217 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC--C----------------------------------
Confidence 3444555555 33457899999999999999999999998731 0
Q ss_pred cCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 205 NIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..+.++++.+.. ++|+ .|.||| +++++.++.++|+|+|.+|+-.+.+
T Consensus 218 ----~~e~l~~~~~~~~~~i~i--~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 218 ----TPDEIREFVKLVPSAIVT--EASGGI-TLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred ----CHHHHHHHHHhcCCCceE--EEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 112233333322 3455 567999 6999999999999999999966544
No 181
>PLN02826 dihydroorotate dehydrogenase
Probab=98.35 E-value=3.4e-06 Score=81.89 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=53.5
Q ss_pred HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhc
Q 037779 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCG 287 (310)
Q Consensus 210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (310)
.+.+..+.+.. ++|| |+.|||.|.+|+.+.+.+||+.|.++|+++... | ..++.+.+.+..+.....+..+.+.
T Consensus 328 l~~v~~l~~~~~~~ipI--IgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~G-p-~~i~~I~~eL~~~l~~~G~~si~e~ 403 (409)
T PLN02826 328 TEVLREMYRLTRGKIPL--VGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEG-P-ALIPRIKAELAACLERDGFKSIQEA 403 (409)
T ss_pred HHHHHHHHHHhCCCCcE--EEECCCCCHHHHHHHHHhCCCeeeecHHHHhcC-H-HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 45556665543 6899 667999999999999999999999999988742 3 3555566666554444444444444
Q ss_pred cC
Q 037779 288 LG 289 (310)
Q Consensus 288 ~~ 289 (310)
.|
T Consensus 404 iG 405 (409)
T PLN02826 404 VG 405 (409)
T ss_pred hC
Confidence 44
No 182
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.35 E-value=1.3e-05 Score=76.24 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=46.5
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~ 265 (310)
.+++.+.+++..++|| ++.|+|.+++++.++++.| +|.|++|++++..++....+
T Consensus 263 ~~~~~~~ik~~~~ipV--i~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~ 318 (337)
T PRK13523 263 QVPFAEHIREHANIAT--GAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIA 318 (337)
T ss_pred cHHHHHHHHhhcCCcE--EEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHH
Confidence 4567778888778999 5689999999999999976 99999999999987765444
No 183
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.33 E-value=6.4e-06 Score=78.77 Aligned_cols=54 Identities=31% Similarity=0.497 Sum_probs=43.2
Q ss_pred HHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 037779 211 DLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 211 ~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~ 266 (310)
.....+++.. ++|| |+.|||.|++++.++++.|+|.|++|++++..+|....++
T Consensus 272 ~~~~~ik~~~~~~iPV--i~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~ 327 (353)
T cd04735 272 TIMELVKERIAGRLPL--IAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred HHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHH
Confidence 3444455433 6899 6689999999999999999999999999999888765543
No 184
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.33 E-value=4.7e-06 Score=76.75 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=65.6
Q ss_pred hhHHHHHHHhcC-CCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 126 PADEENHINKHN-FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~~~~~~-~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
....++.+++.. ++..+.++++|++|+..+.+.|+|+|.+... +. +.
T Consensus 167 ~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~-~~-------------------------e~------ 214 (269)
T cd01568 167 ITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM-SP-------------------------EE------ 214 (269)
T ss_pred HHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC-CH-------------------------HH------
Confidence 344556666633 3688999999999999999999999998421 10 00
Q ss_pred cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..+.++.+++..++|+ .+.||| |++++.++.++|+|++.+|+.++..
T Consensus 215 ----l~~~v~~i~~~~~i~i--~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 215 ----LKEAVKLLKGLPRVLL--EASGGI-TLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred ----HHHHHHHhccCCCeEE--EEECCC-CHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 0112222322235787 567999 6999999999999999997655543
No 185
>PLN02979 glycolate oxidase
Probab=98.33 E-value=3.8e-05 Score=73.06 Aligned_cols=95 Identities=25% Similarity=0.414 Sum_probs=69.4
Q ss_pred HHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779 130 ENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA 208 (310)
Q Consensus 130 ~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
++.++++ -++++++ ++.+.++++++.+.|+|.|.+.+..+.. +.. ...
T Consensus 215 l~wlr~~-~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq------------------ld~------------~p~ 263 (366)
T PLN02979 215 VQWLQTI-TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ------------------LDY------------VPA 263 (366)
T ss_pred HHHHHhc-cCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC------------------CCC------------chh
Confidence 3444442 2466666 5889999999999999999887653321 100 112
Q ss_pred cHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+.+.+..+.+. .++|| |++|||.+..|+.+++.+||++|.+|+.++.
T Consensus 264 t~~~L~ei~~~~~~~~~V--i~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 264 TISALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHHHHhCCCCeE--EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 35556656443 35888 6799999999999999999999999999885
No 186
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.31 E-value=3.2e-05 Score=69.05 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=43.7
Q ss_pred CcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 208 ~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+.+.++.+++.. ++|+ +..|||.+++++++++++|||+|++||.+.+.
T Consensus 165 v~~e~i~~v~~~~~~~pl--~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARL--FVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred cCHHHHHHHHHHcCCCCE--EEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 3578888888875 7899 56999999999999999999999999999984
No 187
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.30 E-value=6.8e-06 Score=75.83 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=65.7
Q ss_pred hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779 127 ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI 206 (310)
Q Consensus 127 ~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
...++.+++..++..+.++++|.+|+..+.+.|+|||..... +
T Consensus 177 ~~av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~--------------------------~----------- 219 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDEL--------------------------S----------- 219 (277)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------C-----------
Confidence 344455555445688999999999999999999999987311 1
Q ss_pred CCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 207 AAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 207 ~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.++++.+. .++|+ .|+||| +++++.++.++|+|++.+|+..+.++
T Consensus 220 ---~e~l~~~v~~~~~~i~l--eAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 220 ---LDDMREAVRLTAGRAKL--EASGGI-NESTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred ---HHHHHHHHHHhCCCCcE--EEECCC-CHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 1111222121 36788 568999 69999999999999999999776654
No 188
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.29 E-value=4.2e-06 Score=77.16 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779 127 ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI 206 (310)
Q Consensus 127 ~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
.+.++.+++..++..+.++++|.+|+..+.+.|+|+|.+. +.+...
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld-~~~p~~--------------------------------- 216 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLD-KFSPEE--------------------------------- 216 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEEC-CCCHHH---------------------------------
Confidence 3455555554455788999999999999999999999985 211100
Q ss_pred CCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 207 AAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 207 ~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..++.+.+++. .++|+ +|.||| +++++.++.++|+|+|+ .|+++.+
T Consensus 217 --l~~~~~~~~~~~~~i~i--~AsGGI-~~~ni~~~~~~Gvd~I~-vsai~~a 263 (272)
T cd01573 217 --LAELVPKLRSLAPPVLL--AAAGGI-NIENAAAYAAAGADILV-TSAPYYA 263 (272)
T ss_pred --HHHHHHHHhccCCCceE--EEECCC-CHHHHHHHHHcCCcEEE-EChhhcC
Confidence 12333334432 35788 567999 69999999999999994 4555544
No 189
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.29 E-value=7.4e-06 Score=75.43 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=68.3
Q ss_pred ChhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+..+.++.++.+.+ ...+.+++.|.+|++.++++|+|+|...+. +++.
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~--------------------------~~e~----- 215 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM--------------------------SVEE----- 215 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------CHHH-----
Confidence 34566667766555 488999999999999999999999987422 1000
Q ss_pred ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
-.+.++.++. ..++.+ .|+||| +++++.++.++|+|.+.+|+.++.++
T Consensus 216 -----l~~~v~~~~~~~~~~~i--eAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 216 -----IKEVVAYRNANYPHVLL--EASGNI-TLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred -----HHHHHHHhhccCCCeEE--EEECCC-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 0112222221 123334 789999 79999999999999999999888654
No 190
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.29 E-value=7.1e-06 Score=76.06 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=68.8
Q ss_pred hhHHHHHHHhc-CCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 126 PADEENHINKH-NFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~~~~~-~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+.++.+++. ++...+.++++|.+|+..+.+.|+|+|.+... +++.+
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~--------------------------~~e~l----- 230 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM--------------------------PVDLM----- 230 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH-----
Confidence 44555566653 33678999999999999999999999998521 11111
Q ss_pred cCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 205 NIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 205 ~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.++.+++ ..++|+ .|+||| +++++.++.++|+|++.+|+.++.++
T Consensus 231 -----~~av~~~~~~~~~i~l--eAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 231 -----QQAVQLIRQQNPRVKI--EASGNI-TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred -----HHHHHHHHhcCCCeEE--EEECCC-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 122233332 245677 678999 69999999999999999999998765
No 191
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.28 E-value=6.3e-06 Score=78.53 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=70.2
Q ss_pred HHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779 130 ENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA 208 (310)
Q Consensus 130 ~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
++.+++. .++++++. +.++++++++.+.|+|.|.+.+..+. .+ + ....
T Consensus 213 l~~lr~~-~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr------------------~l---d---------~~~~ 261 (351)
T cd04737 213 IEFIAKI-SGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGR------------------QL---D---------GGPA 261 (351)
T ss_pred HHHHHHH-hCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCc------------------cC---C---------CCch
Confidence 3445442 35677775 78999999999999999988654321 00 0 0112
Q ss_pred cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+++.+..+.+.. ++|| |++|||.+..|+.+++.+||++|++|++++.+
T Consensus 262 ~~~~l~~i~~a~~~~i~v--i~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~ 311 (351)
T cd04737 262 SFDSLPEIAEAVNHRVPI--IFDSGVRRGEHVFKALASGADAVAVGRPVLYG 311 (351)
T ss_pred HHHHHHHHHHHhCCCCeE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 355666666543 6899 67999999999999999999999999999874
No 192
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.28 E-value=1.5e-06 Score=82.47 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=40.2
Q ss_pred HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHH
Q 037779 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPV 262 (310)
Q Consensus 210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~ 262 (310)
.+++..+.+.. ++|+ |+.|||.|++|+.+++.+||+.|.+||+++. .++..
T Consensus 275 l~~v~~~~~~~~~~ipi--ig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~ 328 (335)
T TIGR01036 275 TEIIRRLYAELQGRLPI--IGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLV 328 (335)
T ss_pred HHHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHH
Confidence 34555555433 6899 6789999999999999999999999999977 35543
No 193
>PRK06801 hypothetical protein; Provisional
Probab=98.28 E-value=0.00019 Score=66.67 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
...+++++.++..|.++. +...+ +.|. ..-...++.+.+...+||.++ |.-..++.++.+.+.|.+.|-.. +.
T Consensus 33 avi~AAe~~~~PvIl~~~--~~~~~-~~~~--~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~ 107 (286)
T PRK06801 33 ALFAAAKQERSPFIINIA--EVHFK-YISL--ESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGST 107 (286)
T ss_pred HHHHHHHHHCCCEEEEeC--cchhh-cCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCC
Confidence 347777888888775552 11111 1111 001334566677789999887 33334577788888999998732 22
Q ss_pred CChhH-------HHHHHHhcCCCCcEE-------------------ee-cCCHHHHHHHH-HhCCCEEEEe-cCCCCCch
Q 037779 124 LTPAD-------EENHINKHNFRVPFV-------------------CG-CRNLGESLRRI-REGAAMIRTK-GEAGTGNI 174 (310)
Q Consensus 124 ~~~~~-------~~~~~~~~~~~l~v~-------------------~~-v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~ 174 (310)
++.++ +.+.+++.+ +.+- .+ -.+++++++.. +.|+|++.+. |..++.
T Consensus 108 l~~eeNi~~t~~v~~~a~~~g--v~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~-- 183 (286)
T PRK06801 108 LEYEENVRQTREVVKMCHAVG--VSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGK-- 183 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcC--CeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCC--
Confidence 33332 223333332 2220 01 22457787777 6788988873 322211
Q ss_pred HHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779 175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa 254 (310)
.+. ....+++.++.+.+..++|+|+.-++|| +.+++.++.++|++.|-++|.
T Consensus 184 ----------------y~~-----------~~~l~~e~l~~i~~~~~~PLVlHGGSgi-~~e~~~~~i~~Gi~KINv~T~ 235 (286)
T PRK06801 184 ----------------YKG-----------EPKLDFARLAAIHQQTGLPLVLHGGSGI-SDADFRRAIELGIHKINFYTG 235 (286)
T ss_pred ----------------CCC-----------CCCCCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEehhH
Confidence 000 0123688889998877899987744459 589999999999999999999
Q ss_pred ccc
Q 037779 255 VFK 257 (310)
Q Consensus 255 i~~ 257 (310)
+..
T Consensus 236 ~~~ 238 (286)
T PRK06801 236 MSQ 238 (286)
T ss_pred HHH
Confidence 987
No 194
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.26 E-value=9.3e-06 Score=77.59 Aligned_cols=99 Identities=25% Similarity=0.400 Sum_probs=72.3
Q ss_pred ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+..+ ++.+++. -++++++ ++-+.++++++.+.|+|.|.+.+..+.. +..
T Consensus 212 tW~d-i~wlr~~-~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq------------------ld~---------- 261 (367)
T PLN02493 212 SWKD-VQWLQTI-TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ------------------LDY---------- 261 (367)
T ss_pred CHHH-HHHHHhc-cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCC------------------CCC----------
Confidence 4444 4556553 2467666 5889999999999999999887654321 110
Q ss_pred ccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 204 KNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
...+.+.+..+.+. .++|| |++|||.+..|+.+++.+||++|.+|+.++.
T Consensus 262 --~~~t~~~L~ei~~av~~~~~v--i~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 262 --VPATISALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred --chhHHHHHHHHHHHhCCCCeE--EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 12245566666553 35898 6799999999999999999999999999885
No 195
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.25 E-value=3.9e-05 Score=67.72 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=38.8
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
.+.++++.+++..++|+ ++.|||+++++++++.+.|||+|++|
T Consensus 163 v~~e~i~~Vk~~~~~Pv--~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKASGIPL--IVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhhCCCE--EEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 46788899988778999 67999999999999999999999997
No 196
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.17 E-value=1.3e-05 Score=76.69 Aligned_cols=100 Identities=22% Similarity=0.352 Sum_probs=67.3
Q ss_pred ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+.++ ++.+.++ .++++++ ++-+.+++.++.+.|++.|-+.|..++.. ..
T Consensus 213 ~w~~-i~~~~~~-~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~------------------d~---------- 262 (356)
T PF01070_consen 213 TWDD-IEWIRKQ-WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQL------------------DW---------- 262 (356)
T ss_dssp SHHH-HHHHHHH-CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSS------------------TT----------
T ss_pred CHHH-HHHHhcc-cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccC------------------cc----------
Confidence 3434 3444432 3566666 68899999999999999999886644321 00
Q ss_pred ccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 204 KNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
-.++.+.+..+.+. .++|| |++|||.+..|+.+++.+||++|.+|+.++.+
T Consensus 263 --~~~~~~~L~~i~~~~~~~~~i--~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~ 315 (356)
T PF01070_consen 263 --GPPTIDALPEIRAAVGDDIPI--IADGGIRRGLDVAKALALGADAVGIGRPFLYA 315 (356)
T ss_dssp --S-BHHHHHHHHHHHHTTSSEE--EEESS--SHHHHHHHHHTT-SEEEESHHHHHH
T ss_pred --ccccccccHHHHhhhcCCeeE--EEeCCCCCHHHHHHHHHcCCCeEEEccHHHHH
Confidence 12245555666553 36899 67999999999999999999999999998874
No 197
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.16 E-value=1.8e-05 Score=76.05 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=69.2
Q ss_pred HHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779 130 ENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA 208 (310)
Q Consensus 130 ~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
++.++++ .++++++ ++-+.++++++.+.|+|.|.+.+..++. +.. ...
T Consensus 237 i~~lr~~-~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~------------------~d~------------~~~ 285 (381)
T PRK11197 237 LEWIRDF-WDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQ------------------LDG------------VLS 285 (381)
T ss_pred HHHHHHh-CCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCC------------------CCC------------ccc
Confidence 4445443 2345444 7999999999999999999987653321 100 112
Q ss_pred cHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+.+.+..+.+. .++|| |++|||.+..|+.+++.+||++|++|+.++.+
T Consensus 286 t~~~L~~i~~a~~~~~~v--i~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~ 335 (381)
T PRK11197 286 SARALPAIADAVKGDITI--LADSGIRNGLDVVRMIALGADTVLLGRAFVYA 335 (381)
T ss_pred HHHHHHHHHHHhcCCCeE--EeeCCcCcHHHHHHHHHcCcCceeEhHHHHHH
Confidence 34555555443 36898 67999999999999999999999999999874
No 198
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=98.16 E-value=0.00016 Score=64.33 Aligned_cols=57 Identities=25% Similarity=0.459 Sum_probs=44.5
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~ 272 (310)
+.+.++.+++. .|+ |..|||.|+++++++.++|||.+++|+.+.+++ +++.+..+++
T Consensus 181 ~~e~v~~v~~~--~~L--ivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~---~~~~~~v~~~ 237 (240)
T COG1646 181 PVEMVSRVLSD--TPL--IVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP---DKALETVEAI 237 (240)
T ss_pred CHHHHHHhhcc--ceE--EEcCCcCCHHHHHHHHHcCCCEEEECceeecCH---HHHHHHHHHh
Confidence 56666776653 377 779999999999999999999999999999955 3444444443
No 199
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.16 E-value=1.9e-05 Score=75.92 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC
Q 037779 129 EENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA 207 (310)
Q Consensus 129 ~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
.++.+++. .++++++ ++.+.++++++.+.|+|.|.+.+..+.. +.. ..
T Consensus 244 ~i~~lr~~-~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~------------------~d~------------~~ 292 (383)
T cd03332 244 DLAFLREW-TDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ------------------VDG------------SI 292 (383)
T ss_pred HHHHHHHh-cCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC------------------CCC------------Cc
Confidence 34445442 2466666 5999999999999999999887543311 100 12
Q ss_pred CcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 208 APYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 208 ~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++.+.+..+.+.. ++|| +++|||.+..|+.+++.+||++|.+|+.++.
T Consensus 293 ~t~~~L~ei~~~~~~~~~v--i~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 293 AALDALPEIVEAVGDRLTV--LFDSGVRTGADIMKALALGAKAVLIGRPYAY 342 (383)
T ss_pred CHHHHHHHHHHHhcCCCeE--EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 2455666665532 5898 6799999999999999999999999999985
No 200
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.11 E-value=9.3e-05 Score=70.38 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=45.3
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~ 265 (310)
.+++.+.+++..++|| ++.|||. ++++.++++.| +|.|.+|++++..+|....+
T Consensus 273 ~~~~~~~ik~~~~ipv--i~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~ 327 (338)
T cd02933 273 PPDFLDFLRKAFKGPL--IAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVERL 327 (338)
T ss_pred chHHHHHHHHHcCCCE--EEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHH
Confidence 4567777888778999 6689996 99999999975 99999999999988766544
No 201
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.10 E-value=0.00024 Score=61.33 Aligned_cols=153 Identities=24% Similarity=0.269 Sum_probs=92.5
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc---CcceEeeccccc--------hHHHHHHHHcC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV---TIPVMAKARIGH--------FVEAQILEAIG 114 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~---~lPv~~kd~i~~--------~~~~~~~~~aG 114 (310)
++++.+.++|++++... .+.++.+++.+ ++|++++..-.. .+.++.+.++|
T Consensus 17 ~~~~~~~~~gv~gi~~~------------------g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 17 KLCDEAIEYGFAAVCVN------------------PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred HHHHHHHHhCCcEEEEC------------------HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 67899999999998432 24555555543 488887643322 24567788899
Q ss_pred CCeeeec-CC---CC--hhHHHHHHHh---cC-CCCcEEeecC-----CHHHHHH----HHHhCCCEEEEecCCCCCchH
Q 037779 115 VDYVDES-EV---LT--PADEENHINK---HN-FRVPFVCGCR-----NLGESLR----RIREGAAMIRTKGEAGTGNIV 175 (310)
Q Consensus 115 ad~v~~~-~~---~~--~~~~~~~~~~---~~-~~l~v~~~v~-----t~~ea~~----a~~~Gad~I~v~g~~~~~~~~ 175 (310)
||.+... .. .+ ...+.+.+++ .- .++++++... +.++..+ +.+.|++.|+......++
T Consensus 79 ad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~--- 155 (201)
T cd00945 79 ADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGG--- 155 (201)
T ss_pred CCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC---
Confidence 9998742 11 11 2333343332 21 3566665432 4554443 346788888875211100
Q ss_pred HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
..+.+..+.+.+.. ++|+ ++.||+.+++++..++..|++|+++|
T Consensus 156 -------------------------------~~~~~~~~~i~~~~~~~~~v--~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 156 -------------------------------GATVEDVKLMKEAVGGRVGV--KAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred -------------------------------CCCHHHHHHHHHhcccCCcE--EEECCCCCHHHHHHHHHhccceeecC
Confidence 01233344444432 5688 55799988999999999999999876
No 202
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.10 E-value=3.8e-06 Score=78.24 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=41.3
Q ss_pred HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHHHH
Q 037779 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVRRARAIVQAVT 273 (310)
Q Consensus 210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~~~~~~~~~~~ 273 (310)
...+..+.+.. ++|| |+.|||.|++|+.+++.+||+.|.++|+++. .++ .++++.+.++
T Consensus 231 L~~V~~~~~~~~~~i~I--ig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~---~~~~i~~~L~ 292 (295)
T PF01180_consen 231 LRWVRELRKALGQDIPI--IGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPG---VIRRINRELE 292 (295)
T ss_dssp HHHHHHHHHHTTTSSEE--EEESS--SHHHHHHHHHHTESEEEESHHHHHHGTT---HHHHHHHHHH
T ss_pred HHHHHHHHhccccceEE--EEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcH---HHHHHHHHHH
Confidence 34445555544 3888 6789999999999999999999999999954 443 3444544444
No 203
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.07 E-value=1.4e-05 Score=71.93 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=41.9
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
...++++.+.+...+|| +++|||.|.+|+.+++++|+++|++||+.+
T Consensus 60 ~n~~~i~~i~~~~~~pv--~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 60 KNLDVVKNIIRETGLKV--QVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred chHHHHHHHHhhCCCCE--EEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 46778888887778899 679999999999999999999999999876
No 204
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=98.07 E-value=0.00026 Score=66.88 Aligned_cols=203 Identities=17% Similarity=0.189 Sum_probs=110.6
Q ss_pred ccccceeeecCCccc------cCCCHH-HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh-h-cCcceE
Q 037779 26 VKVGLAQMLRGGVIM------DVVTPE-QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS-S-VTIPVM 96 (310)
Q Consensus 26 ~~~~~~~~l~~g~i~------~~~~~~-~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~-~-~~lPv~ 96 (310)
+.+|+.+-+..|.+. ...+++ ..+.+.++|++++. + . .-.++.... . .++|++
T Consensus 68 vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~-~--------~---------~G~l~~~~~~~~~~iplI 129 (348)
T PRK09250 68 SILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVA-S--------T---------LGVLEAVARKYAHKIPFI 129 (348)
T ss_pred EEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEE-e--------C---------HHHHHhccccccCCCCEE
Confidence 345556656666665 455664 78999999999983 2 1 113333221 1 256766
Q ss_pred eecc----c-c---c----hHHHHHHHHcCCCeeeecCCC-C------hhHHHHHHHh-cCCCCcEEeec-------CC-
Q 037779 97 AKAR----I-G---H----FVEAQILEAIGVDYVDESEVL-T------PADEENHINK-HNFRVPFVCGC-------RN- 148 (310)
Q Consensus 97 ~kd~----i-~---~----~~~~~~~~~aGad~v~~~~~~-~------~~~~~~~~~~-~~~~l~v~~~v-------~t- 148 (310)
++.- + . + +-.++.+...|||+|-.+-.. + ..++.+...+ +..|+++++-+ .+
T Consensus 130 lkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~ 209 (348)
T PRK09250 130 LKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKD 209 (348)
T ss_pred EEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCc
Confidence 6511 1 0 0 123567888999998632111 1 1122222233 55678777622 11
Q ss_pred ------HH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc-ceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779 149 ------LG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG-DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK 217 (310)
Q Consensus 149 ------~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~ 217 (310)
++ -+..+.++|||+|++.-+..-..+ +.+ .++. +.+..... .+..+.+..+.+.
T Consensus 210 ~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f----~~v-~~~~~~~~~~~~~----------~~~~~~~~~~~~V 274 (348)
T PRK09250 210 GDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGY----KAI-NFGKTDDRVYSKL----------TSDHPIDLVRYQV 274 (348)
T ss_pred ccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhH----HHh-hcccccccccccc----------cccchHHHHHHHH
Confidence 11 134566899999998622110000 000 0000 01111111 1234566677776
Q ss_pred hcC---CCCEEEEccCCCC-CH----HHHHHH---HHcCCCEEEEccccccCCCHHH
Q 037779 218 QLG---RLPVVHFAAGGVA-TP----ADAAMM---MQLGCDGVFVGSGVFKSGDPVR 263 (310)
Q Consensus 218 ~~~---~iPVv~ia~GGI~-t~----~di~~~---~~~GadgV~VGsai~~~~dp~~ 263 (310)
+.+ ++||+ .+||=. +. +.++.+ ++.|+.|+++|+-+++.++++.
T Consensus 275 ~ac~ag~vpVv--iAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~ea 329 (348)
T PRK09250 275 ANCYMGRRGLI--NSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAEG 329 (348)
T ss_pred HhhccCCceEE--EeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHHH
Confidence 655 78995 366655 22 335677 8889999999999999998763
No 205
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.06 E-value=0.00011 Score=66.03 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=40.1
Q ss_pred ccCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779 228 AAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273 (310)
Q Consensus 228 a~GGI~t~~-----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~ 273 (310)
..+||. ++ ...++++.|+++++||++|++++||.++++++.+.+.
T Consensus 173 v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 173 VTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred EcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 469996 55 6888899999999999999999999999999998775
No 206
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.06 E-value=0.00015 Score=68.85 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHH
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRR 264 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~ 264 (310)
.+..+.+++..++|| ++.|||.+++++.++++.| +|.|.+|++++..++....
T Consensus 279 ~~~~~~ir~~~~iPV--i~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 279 VPFAERIRQEAGIPV--IAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred HHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 466677887778999 5689999999999999987 9999999999998776543
No 207
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.05 E-value=0.0023 Score=56.87 Aligned_cols=185 Identities=21% Similarity=0.238 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeecccc-chHHH-HHHHHcCCCe
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIG-HFVEA-QILEAIGVDY 117 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~-~~~~~-~~~~~aGad~ 117 (310)
..+++.++.+.++|++.+-.+ .. .++-+.-+++..+++.+... +.. +..+.+ ..+.+ +.+...+.|.
T Consensus 10 i~~~eda~~~~~~Gad~iGfI-~~-------~~S~R~V~~~~a~~i~~~~~~~i~~-VgVf~~~~~~~i~~~~~~~~~d~ 80 (210)
T PRK01222 10 ITTPEDAEAAAELGADAIGFV-FY-------PKSPRYVSPEQAAELAAALPPFVKV-VGVFVNASDEEIDEIVETVPLDL 80 (210)
T ss_pred CCcHHHHHHHHHcCCCEEEEc-cC-------CCCCCcCCHHHHHHHHHhCCCCCCE-EEEEeCCCHHHHHHHHHhcCCCE
Confidence 466899999999999998332 11 22333445788888887654 211 222222 22343 5667799999
Q ss_pred eeecCCCChhHHHHHHHhc-CCCCcEEeecCCHHHHHHHHH--hCCCEEEEecC--CCCCchHHHHHHHHHhhcceeccc
Q 037779 118 VDESEVLTPADEENHINKH-NFRVPFVCGCRNLGESLRRIR--EGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 118 v~~~~~~~~~~~~~~~~~~-~~~l~v~~~v~t~~ea~~a~~--~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
|..+...+ .+..+.++.. +..+.-.+.+.+..+...+.+ ..+|++-+... .++++
T Consensus 81 vQLHg~e~-~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGt------------------- 140 (210)
T PRK01222 81 LQLHGDET-PEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGT------------------- 140 (210)
T ss_pred EEECCCCC-HHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCC-------------------
Confidence 97654434 4444555542 223333345554444433322 35677665421 11111
Q ss_pred ccCchhHHhhhccCCCcHHHH-HHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC--CHHHHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLV-MQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG--DPVRRARAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~-~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~--dp~~~~~~~ 268 (310)
+..-+|..+ ..+ +.|+ +.+||| +|+|+.++++. ++.||=+.|.+=..+ --...+++|
T Consensus 141 ------------G~~~dw~~l~~~~----~~p~--~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ki~~f 201 (210)
T PRK01222 141 ------------GKTFDWSLLPAGL----AKPW--ILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPEKIRAF 201 (210)
T ss_pred ------------CCccchHHhhhcc----CCCE--EEECCC-CHHHHHHHHHhcCCCEEEecCceECCCCCcCHHHHHHH
Confidence 122245555 222 4588 458999 69999999974 999999999998642 124567777
Q ss_pred HHHHHc
Q 037779 269 VQAVTN 274 (310)
Q Consensus 269 ~~~~~~ 274 (310)
.+.+++
T Consensus 202 ~~~~~~ 207 (210)
T PRK01222 202 IEAVKS 207 (210)
T ss_pred HHHHHh
Confidence 777654
No 208
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.05 E-value=2.6e-05 Score=74.15 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=86.9
Q ss_pred HHHHHHHcCCCeeeec-CC---CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHH
Q 037779 106 EAQILEAIGVDYVDES-EV---LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180 (310)
Q Consensus 106 ~~~~~~~aGad~v~~~-~~---~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~ 180 (310)
....+..+|+|.|+.. +. ....+.++++++..+.+.++.+ +-|.+.++..+.+|+|.+.+. . ++|.+.
T Consensus 255 rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG-M-GsGSiC----- 327 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG-M-GSGSIC----- 327 (503)
T ss_pred HHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec-c-ccCcee-----
Confidence 4466777999998732 11 2234677888888899888875 778889999999999999885 1 122210
Q ss_pred HHHhhcceecccccCchhHHhhhc-cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAK-NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~-~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..... ....+ +..+-++......+ ..+|| ||.|||.++.++.+++.+||+.||+|+-+...
T Consensus 328 ---------iTqev-----ma~GrpQ~TAVy~va~~A~q-~gvpv--iADGGiq~~Ghi~KAl~lGAstVMmG~lLAgt 389 (503)
T KOG2550|consen 328 ---------ITQKV-----MACGRPQGTAVYKVAEFANQ-FGVPC--IADGGIQNVGHVVKALGLGASTVMMGGLLAGT 389 (503)
T ss_pred ---------eecee-----eeccCCcccchhhHHHHHHh-cCCce--eecCCcCccchhHhhhhcCchhheecceeeee
Confidence 00000 00001 11122333333332 46899 78999999999999999999999999988774
No 209
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.02 E-value=3.4e-05 Score=66.16 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=67.0
Q ss_pred hhHHHHHHHhcCCCC-cEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 126 PADEENHINKHNFRV-PFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~~~~~~~~l-~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+.++.+++..+.. .+.+++.|.+|++.+++.|+|+|..-.. +++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~--------------------------~~~~------ 113 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM--------------------------SPED------ 113 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES---------------------------CHHH------
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc--------------------------CHHH------
Confidence 566677777754554 4999999999999999999999998521 1111
Q ss_pred cCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 205 NIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
-.+.++.+++. .++.+ .++||| +++++.++.+.|+|.+.+|+..+.++
T Consensus 114 ----~~~~v~~l~~~~~~v~i--e~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 114 ----LKEAVEELRELNPRVKI--EASGGI-TLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp ----HHHHHHHHHHHTTTSEE--EEESSS-STTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred ----HHHHHHHHhhcCCcEEE--EEECCC-CHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 12233333332 23333 689999 69999999999999999999888764
No 210
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.02 E-value=9.3e-05 Score=66.05 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCCCcEEeecCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc----ceecccccCc-hh
Q 037779 128 DEENHINKHNFRVPFVCGCRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG----DIRVLRNMDD-DE 198 (310)
Q Consensus 128 ~~~~~~~~~~~~l~v~~~v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~-d~ 198 (310)
++++.+++..++..++++.+..+ ++..+.+.|+|++.+++.++...+.++++.+.+.+. ++....+... ..
T Consensus 45 ~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~~ 124 (218)
T PRK13305 45 GAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTLDDARD 124 (218)
T ss_pred HHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCcchHHH
Confidence 34455555445667777755433 445566788888777754333344444443333221 2221112111 11
Q ss_pred HHh---------hh-----ccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 037779 199 VFT---------FA-----KNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 199 ~~~---------~~-----~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~ 262 (310)
+.+ .+ .+...+..-+..+++.. +.++ ++.||| .++.....-+.++|-++||++|++++||.
T Consensus 125 l~~~g~~~~v~h~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i--~VtpGI-r~~~~~~~dq~rvd~iVVGR~It~A~dP~ 201 (218)
T PRK13305 125 WHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLEL--SITGGI-TPADLPLFKDIRVKAFIAGRALAGAANPA 201 (218)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCcE--EEeCCc-CccccccccccCCCEEEECCcccCCCCHH
Confidence 100 01 11111223345555543 3334 457999 58888888889999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 037779 263 RRARAIVQAVTN 274 (310)
Q Consensus 263 ~~~~~~~~~~~~ 274 (310)
+.++++.+.+..
T Consensus 202 ~aa~~i~~~i~~ 213 (218)
T PRK13305 202 QVAADFHAQIDA 213 (218)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 211
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.01 E-value=2.5e-05 Score=71.25 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..+++++.+.+..++|| ++.|||.+.+++.+++.+|++.|++||+++..
T Consensus 61 ~n~~~i~~i~~~~~~pv--~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~ 109 (254)
T TIGR00735 61 TMIDVVERTAETVFIPL--TVGGGIKSIEDVDKLLRAGADKVSINTAAVKN 109 (254)
T ss_pred hhHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 35778888888778999 56899999999999999999999999988874
No 212
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.98 E-value=0.0002 Score=69.26 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~ 265 (310)
+.+.+.+++..++|| ++.|||.+++++.++++.| +|.|++|++++..+|....+
T Consensus 294 ~~~~~~ik~~~~~pv--i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~ 348 (382)
T cd02931 294 LPYCKALKEVVDVPV--IMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKI 348 (382)
T ss_pred HHHHHHHHHHCCCCE--EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHH
Confidence 456677888778999 6789999999999999875 99999999999988765444
No 213
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.94 E-value=0.0029 Score=55.95 Aligned_cols=186 Identities=25% Similarity=0.291 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeecccc-chHHH-HHHHHcCCCee
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIG-HFVEA-QILEAIGVDYV 118 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~-~~~~~-~~~~~aGad~v 118 (310)
...++.++.+.++||+.+-.+ ..+. |-|.-+++..+++.+.+. ++ .+..+.+ ..+++ +++...+.|.|
T Consensus 9 lt~~eda~~a~~~gad~iG~I-f~~~-------SpR~Vs~~~a~~i~~~v~~~~-~VgVf~n~~~~~i~~i~~~~~ld~V 79 (208)
T COG0135 9 LTRLEDAKAAAKAGADYIGFI-FVPK-------SPRYVSPEQAREIASAVPKVK-VVGVFVNESIEEILEIAEELGLDAV 79 (208)
T ss_pred CCCHHHHHHHHHcCCCEEEEE-EcCC-------CCCcCCHHHHHHHHHhCCCCC-EEEEECCCCHHHHHHHHHhcCCCEE
Confidence 456899999999999997333 1111 334455888888887765 33 2233333 22333 56677899998
Q ss_pred eecCCCChhHHHHHHHhcC-CCCcEEeecCCHH--HHHHHHHhCCCEEEEecCC---CCCchHHHHHHHHHhhcceeccc
Q 037779 119 DESEVLTPADEENHINKHN-FRVPFVCGCRNLG--ESLRRIREGAAMIRTKGEA---GTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-~~l~v~~~v~t~~--ea~~a~~~Gad~I~v~g~~---~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
-.|-.. +.+.++.++... ..+.-.+.+.... +.......-+|.+-+-... .+|+
T Consensus 80 QlHG~e-~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt------------------- 139 (208)
T COG0135 80 QLHGDE-DPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT------------------- 139 (208)
T ss_pred EECCCC-CHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC-------------------
Confidence 755443 445556666532 2333333444332 2222333455666554321 1111
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC-CEEEEccccccCC---CHHHHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC-DGVFVGSGVFKSG---DPVRRARAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga-dgV~VGsai~~~~---dp~~~~~~~ 268 (310)
+..-+|.++... ....|+ +.+||| ||+|+.++++++. .||=+.|.+=.++ | ..++++|
T Consensus 140 ------------G~~fDW~~l~~~--~~~~~~--~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD-~~kv~~f 201 (208)
T COG0135 140 ------------GQTFDWNLLPKL--RLSKPV--MLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSPGIKD-PAKVKAF 201 (208)
T ss_pred ------------CcEECHHHhccc--cccCCE--EEECCC-CHHHHHHHHHhcCCceEEeccccccCCCCCC-HHHHHHH
Confidence 122367776665 134687 458999 6999999999987 9999999998873 4 3567777
Q ss_pred HHHHHc
Q 037779 269 VQAVTN 274 (310)
Q Consensus 269 ~~~~~~ 274 (310)
.+.++.
T Consensus 202 ~~~vk~ 207 (208)
T COG0135 202 FEAVKR 207 (208)
T ss_pred HHHHhc
Confidence 777653
No 214
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.91 E-value=0.00017 Score=68.96 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~ 265 (310)
.+..+.+++..++|| ++.|+|.+++++.++++.| +|.|++|++++..+|....+
T Consensus 265 ~~~~~~ik~~v~iPV--i~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~ 319 (353)
T cd02930 265 AWATAKLKRAVDIPV--IASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKA 319 (353)
T ss_pred HHHHHHHHHhCCCCE--EEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence 445677888778999 6789999999999999975 99999999999988765443
No 215
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.91 E-value=0.00042 Score=63.94 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=66.3
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
+..+.++.+++..++..+.+++.|.+|++.+.++|+|+|...+. +++.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn~--------------------------~~e~------ 221 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDKF--------------------------TPQQ------ 221 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECCC--------------------------CHHH------
Confidence 34566666666556678999999999999999999999998621 1111
Q ss_pred cCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 205 NIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
..+.++.+++. .++.+ -++||| +++++.++.++|+|.+.+|+-.+
T Consensus 222 ----l~~~v~~l~~~~~~~~l--easGGI-~~~ni~~ya~~GvD~is~gal~~ 267 (277)
T TIGR01334 222 ----LHHLHERLKFFDHIPTL--AAAGGI-NPENIADYIEAGIDLFITSAPYY 267 (277)
T ss_pred ----HHHHHHHHhccCCCEEE--EEECCC-CHHHHHHHHhcCCCEEEeCccee
Confidence 12233333321 23333 689999 69999999999999999998643
No 216
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.89 E-value=0.0003 Score=66.86 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~ 266 (310)
+++.+.+++..++|| ++.|+|.+++++.++++.| +|.|.+|+.++..++....++
T Consensus 281 ~~~~~~ik~~v~iPV--i~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~ 336 (338)
T cd04733 281 LEFAEKIRKVTKTPL--MVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLL 336 (338)
T ss_pred HHHHHHHHHHcCCCE--EEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence 467777888778999 5689999999999999975 999999999999887765543
No 217
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.89 E-value=0.0034 Score=55.62 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcce-Eeecccc-chHHH-HHHHHcCCCee
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV-MAKARIG-HFVEA-QILEAIGVDYV 118 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv-~~kd~i~-~~~~~-~~~~~aGad~v 118 (310)
..+++.|+.+.++|++++-.+ .. .+|-+.-+++..+++.+.+.-.+ .+..+.+ ..+.+ +.+...|.|.|
T Consensus 8 it~~eda~~~~~~GaD~iGfI-f~-------~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~v 79 (207)
T PRK13958 8 FTTIKDVTAASQLPIDAIGFI-HY-------EKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTI 79 (207)
T ss_pred CCcHHHHHHHHHcCCCEEEEe-cC-------CCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEE
Confidence 466899999999999998322 11 22334445888888887653111 1222232 22344 56667999999
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCC-HHHHHHH--HHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccc
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRN-LGESLRR--IREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a--~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
..+...+ .+..+.++...+.+.++-..+. ......+ ....+|++-+... .++|+
T Consensus 80 QLHG~e~-~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt-------------------- 138 (207)
T PRK13958 80 QLHGTES-IDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGT-------------------- 138 (207)
T ss_pred EECCCCC-HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcC--------------------
Confidence 7554433 4555666653333444433221 1222111 1224676655421 11111
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH--cCCCEEEEccccccCC-CHHHHHHHHHH
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ--LGCDGVFVGSGVFKSG-DPVRRARAIVQ 270 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~--~GadgV~VGsai~~~~-dp~~~~~~~~~ 270 (310)
+..-+|++++.+ .+.|+ +.+||| +|+|+.+++. .+..||=+.|.+=... .-...+++|.+
T Consensus 139 -----------G~~~dw~~~~~~---~~~p~--iLAGGL-~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~~ki~~f~~ 201 (207)
T PRK13958 139 -----------GQTYDWTILKHI---KDIPY--LIAGGI-NSENIQTVEQLKLSHQGYDIASGIETNGRKDINKMTAIVN 201 (207)
T ss_pred -----------CcEeChHHhhhc---cCCCE--EEECCC-CHHHHHHHHhcCCCCCEEEcccccCCCCCCCHHHHHHHHH
Confidence 122357776655 23588 458999 6999999874 5899999999887432 12456778888
Q ss_pred HHHcC
Q 037779 271 AVTNY 275 (310)
Q Consensus 271 ~~~~~ 275 (310)
.+++.
T Consensus 202 ~v~~~ 206 (207)
T PRK13958 202 IVKGD 206 (207)
T ss_pred HHHhc
Confidence 77643
No 218
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.86 E-value=0.00015 Score=67.21 Aligned_cols=96 Identities=16% Similarity=0.119 Sum_probs=67.5
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
+..+.++.+++..+...+.+++.|.+|+..+++.|+|+|..-.. +++.+
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~LDnm--------------------------~~e~v----- 233 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLLDNF--------------------------PVWQT----- 233 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEeCCC--------------------------CHHHH-----
Confidence 34456666666555678999999999999999999999987521 11111
Q ss_pred cCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 205 NIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.++.+++. .++.+ .++||| +++++.++.++|+|.+.+|+..+.++
T Consensus 234 -----k~av~~~~~~~~~v~i--eaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~ 281 (289)
T PRK07896 234 -----QEAVQRRDARAPTVLL--ESSGGL-TLDTAAAYAETGVDYLAVGALTHSVP 281 (289)
T ss_pred -----HHHHHHHhccCCCEEE--EEECCC-CHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 1222222222 23333 789999 69999999999999999999777543
No 219
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.85 E-value=6.8e-05 Score=67.80 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=44.9
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
...++++.+.+..++|| +++|||.+.+++.++++.|+++|++|++++..++
T Consensus 58 ~~~~~i~~i~~~~~~pv--~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~ 108 (243)
T cd04731 58 TMLDVVERVAEEVFIPL--TVGGGIRSLEDARRLLRAGADKVSINSAAVENPE 108 (243)
T ss_pred ccHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCceEEECchhhhChH
Confidence 36778888888778999 6799999999999999999999999999998543
No 220
>PRK08185 hypothetical protein; Provisional
Probab=97.85 E-value=0.0045 Score=57.41 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
...+++++.+...|.++. +...++ .|. .-...++.+.+..++||.++ |.-.+++.++.+.+.|.+.|... ..
T Consensus 28 avi~AAee~~sPvIl~~~--~~~~~~-~~~---~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~ 101 (283)
T PRK08185 28 AVVEEAEANNAPAIIAIH--PNELDF-LGD---NFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL 101 (283)
T ss_pred HHHHHHHHhCCCEEEEeC--cchhhh-ccH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 347778888888876652 111111 121 12445666677789999887 33335677888889999998732 23
Q ss_pred CChhHHHH-------HHHhcCCCC----cE----------Eee---cCCHHHHHHHHHh-CCCEEEEe-cCCCCCchHHH
Q 037779 124 LTPADEEN-------HINKHNFRV----PF----------VCG---CRNLGESLRRIRE-GAAMIRTK-GEAGTGNIVEA 177 (310)
Q Consensus 124 ~~~~~~~~-------~~~~~~~~l----~v----------~~~---v~t~~ea~~a~~~-Gad~I~v~-g~~~~~~~~~~ 177 (310)
++.++.++ .+++.+..+ .. ..+ .++++|+.+..+. |+|++.+. |..++-
T Consensus 102 l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~----- 176 (283)
T PRK08185 102 LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGI----- 176 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCC-----
Confidence 44443332 223222111 00 111 4588899988865 99999873 222110
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC-HHHHHHHHHcCCCEEEEccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT-PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t-~~di~~~~~~GadgV~VGsai~ 256 (310)
+++-.+ ..-++++++.+++..++|+++. ||++. .++++++.+.|..-|=++|.+.
T Consensus 177 -------------y~~~~k---------p~L~~e~l~~I~~~~~iPLVlH--Ggsg~~~e~~~~ai~~GI~KiNi~T~l~ 232 (283)
T PRK08185 177 -------------YPKDKK---------PELQMDLLKEINERVDIPLVLH--GGSANPDAEIAESVQLGVGKINISSDMK 232 (283)
T ss_pred -------------cCCCCC---------CCcCHHHHHHHHHhhCCCEEEE--CCCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence 111000 1125888999988778999877 55544 4779999999999999999887
Q ss_pred c
Q 037779 257 K 257 (310)
Q Consensus 257 ~ 257 (310)
.
T Consensus 233 ~ 233 (283)
T PRK08185 233 Y 233 (283)
T ss_pred H
Confidence 6
No 221
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=97.84 E-value=0.0012 Score=57.37 Aligned_cols=58 Identities=24% Similarity=0.523 Sum_probs=50.1
Q ss_pred CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 037779 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~ 266 (310)
+.+.+++..+.+...-|| +.+|||.-+|++..+..+|++||+||+++++...|.+..+
T Consensus 167 G~~~E~l~~~~~~s~~pV--llGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~~ 224 (229)
T COG1411 167 GPDYELLTKVLELSEHPV--LLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVEQ 224 (229)
T ss_pred CCCHHHHHHHHHhccCce--eecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHHh
Confidence 467888888888767799 4599999999999999999999999999999998876543
No 222
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.84 E-value=0.00064 Score=65.47 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=46.1
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~ 265 (310)
.+++...+++..++|| |+.|||.+++++.++++.| +|.|++|++++..++....+
T Consensus 277 ~~~~~~~ik~~~~~pv--i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~ 332 (370)
T cd02929 277 QEPYIKFVKQVTSKPV--VGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKI 332 (370)
T ss_pred cHHHHHHHHHHCCCCE--EEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHH
Confidence 3566777888778999 6689999999999999976 99999999999987765443
No 223
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=97.83 E-value=0.00012 Score=67.46 Aligned_cols=95 Identities=26% Similarity=0.476 Sum_probs=69.6
Q ss_pred HHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc
Q 037779 131 NHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP 209 (310)
Q Consensus 131 ~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 209 (310)
+.++.+ -.+++++ ++-+.+|++.|.+.|++-|.+.++++ |.+.+ ..++
T Consensus 216 ~wLr~~-T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGg------------------RQlD~------------vpAt 264 (363)
T KOG0538|consen 216 KWLRSI-TKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGG------------------RQLDY------------VPAT 264 (363)
T ss_pred HHHHhc-CcCCeEEEeecccHHHHHHHHhCCceEEEeCCCc------------------cccCc------------ccch
Confidence 455442 2467666 69999999999999999777764422 11211 2345
Q ss_pred HHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 210 ~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+.++++.+. .++|| +..||+.+..|+.+++.+||.+|.+|+.+..+
T Consensus 265 I~~L~Evv~aV~~ri~V--~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 265 IEALPEVVKAVEGRIPV--FLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHHHHHHHHhcCceEE--EEecCcccchHHHHHHhcccceEEecCchhee
Confidence 6666666654 47899 55899999999999999999999999987763
No 224
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.82 E-value=0.00016 Score=66.70 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=67.1
Q ss_pred hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779 126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205 (310)
Q Consensus 126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
....++.++...+...+.+++.|.+|+..++++|+|+|...+. +++.
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~--------------------------~~e~------- 215 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNM--------------------------TPEE------- 215 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCC--------------------------CHHH-------
Confidence 4455566666556678999999999999999999999887521 1111
Q ss_pred CCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
-.+.+..+++.. +-.+.+.++||| +++++.++.++|+|.+.+|+..+.++
T Consensus 216 ---l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~ 266 (278)
T PRK08385 216 ---IREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHSVR 266 (278)
T ss_pred ---HHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 122233333211 112333789999 69999999999999999999776543
No 225
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.80 E-value=3.7e-05 Score=68.54 Aligned_cols=49 Identities=27% Similarity=0.441 Sum_probs=44.5
Q ss_pred CcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 208 ~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+.++++.+++.. ++|+ +++|||+|++++++++++|||+|++||++++.
T Consensus 161 ~~~e~I~~v~~~~~~~pl--~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPL--IVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred CCHHHHHHHHHhcCCCCE--EEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 4688899998876 8999 56999999999999999999999999999984
No 226
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.79 E-value=0.00015 Score=65.96 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
..++++++.+.+..++|| ++.|||.|.+++.++++.||++|++|+.+++.++
T Consensus 60 ~~~~~~i~~i~~~~~ipv--~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~ 111 (253)
T PRK02083 60 DTMLDVVERVAEQVFIPL--TVGGGIRSVEDARRLLRAGADKVSINSAAVANPE 111 (253)
T ss_pred cchHHHHHHHHHhCCCCE--EeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcH
Confidence 346888888888778999 6799999999999999999999999999998654
No 227
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.78 E-value=0.00033 Score=65.00 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=67.8
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
+..+.++.+++......+.+++.|.+|++.++++|+|+|..... +++.+
T Consensus 191 ~i~~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImLDnm--------------------------spe~l----- 239 (294)
T PRK06978 191 GVGAALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLLDNF--------------------------TLDMM----- 239 (294)
T ss_pred CHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH-----
Confidence 45567777766444567999999999999999999999987521 11111
Q ss_pred cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
.+.++.++. ++.+ -++||| |++++.++.++|+|.+.+|+-.+.++.
T Consensus 240 -----~~av~~~~~--~~~l--EaSGGI-t~~ni~~yA~tGVD~IS~galthsa~~ 285 (294)
T PRK06978 240 -----REAVRVTAG--RAVL--EVSGGV-NFDTVRAFAETGVDRISIGALTKDVRA 285 (294)
T ss_pred -----HHHHHhhcC--CeEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 112222221 2333 689999 699999999999999999997776553
No 228
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.78 E-value=0.0018 Score=58.98 Aligned_cols=193 Identities=20% Similarity=0.212 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCcEEEecc--cccchhh-hcCCCCCCCC-hHHHH----HHHhhc-CcceEeeccc----cc-hHHHHHH
Q 037779 45 PEQARIAEEAGACAVMALE--RVPADIR-AQGGVARMSD-PQLIK----QIKSSV-TIPVMAKARI----GH-FVEAQIL 110 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~--~~~~d~r-~~~G~~~~~~-~~~i~----~i~~~~-~lPv~~kd~i----~~-~~~~~~~ 110 (310)
-=.|+..+.+|+|-|..+| +..-..+ ...|-....| .+.+. ++-..+ ++||+....- .+ ....+.+
T Consensus 25 GlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~l 104 (268)
T PF09370_consen 25 GLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDEL 104 (268)
T ss_dssp HHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHH
T ss_pred chhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHH
Confidence 3568999999999997776 1111111 0001111111 22233 333333 5899886322 22 2456788
Q ss_pred HHcCCCeeee-c---------------CCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCC
Q 037779 111 EAIGVDYVDE-S---------------EVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTG 172 (310)
Q Consensus 111 ~~aGad~v~~-~---------------~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~ 172 (310)
.+.|...|.. + ..+.-...++.++. +..++..+.=+.|.+|++...++|+|++.+| |...++
T Consensus 105 k~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG 184 (268)
T PF09370_consen 105 KELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGG 184 (268)
T ss_dssp HHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----
T ss_pred HHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCC
Confidence 8899999862 1 11222334455554 5567777777889999999999999999988 554333
Q ss_pred chHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc--CCCEE
Q 037779 173 NIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL--GCDGV 249 (310)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~--GadgV 249 (310)
.+- ..+ .+-+.. . ....++.+...+..+=.++++-.|-|.+|+|+..+++. |++|+
T Consensus 185 ~~G---------------a~~~~sl~~a----~--~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf 243 (268)
T PF09370_consen 185 SIG---------------AKTALSLEEA----A--ERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGF 243 (268)
T ss_dssp ---------------------S--HHHH----H--HHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE
T ss_pred CcC---------------ccccCCHHHH----H--HHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence 210 000 000000 0 00122333333322223444668889999999999974 69999
Q ss_pred EEccccccC
Q 037779 250 FVGSGVFKS 258 (310)
Q Consensus 250 ~VGsai~~~ 258 (310)
.-||.+=+-
T Consensus 244 ~G~Ss~ERl 252 (268)
T PF09370_consen 244 IGASSMERL 252 (268)
T ss_dssp EESTTTTHH
T ss_pred ecccchhhc
Confidence 999988773
No 229
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.77 E-value=0.00034 Score=64.99 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=65.7
Q ss_pred hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779 126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205 (310)
Q Consensus 126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+.++.++...+..++.+++.|.+|++.+++.|+|+|..-.. +++.
T Consensus 195 i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~gaDiI~LDn~--------------------------s~e~------- 241 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDNF--------------------------TTEQ------- 241 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEeCCC--------------------------ChHH-------
Confidence 4455555655555678999999999999999999999987421 1111
Q ss_pred CCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
-.+.++.++. ++.+ -|+||| +++++.++.++|+|.+.+|+-...++
T Consensus 242 ---~~~av~~~~~--~~~i--eaSGGI-~~~ni~~yA~tGVD~Is~galthsa~ 287 (296)
T PRK09016 242 ---MREAVKRTNG--RALL--EVSGNV-TLETLREFAETGVDFISVGALTKHVQ 287 (296)
T ss_pred ---HHHHHHhhcC--CeEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCC
Confidence 1122222221 3333 789999 69999999999999999999666544
No 230
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.74 E-value=0.00083 Score=70.63 Aligned_cols=49 Identities=6% Similarity=0.076 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCH
Q 037779 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp 261 (310)
.+.+.+++..++|| ++.|+|.+++++.++++. ++|.|++|+.++..++.
T Consensus 677 ~~~~~ik~~~~~pv--~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 677 PFADRIRNEAGIAT--IAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred HHHHHHHHHcCCEE--EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 45567777678899 678999999999999986 59999999999997753
No 231
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.72 E-value=0.0058 Score=60.34 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHHH-HHHHHcCCCeee
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVEA-QILEAIGVDYVD 119 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~~-~~~~~aGad~v~ 119 (310)
..+++.++.+.++|++++-.+ ..| .|-+.-+++..+++.+.+.+ -.+..+.+ ..+.+ +.+.+++.|.+.
T Consensus 264 it~~eda~~a~~~GaD~lGfI-f~~-------~SpR~V~~~~a~~i~~~l~v-~~VgVfv~~~~~~i~~i~~~~~lD~vQ 334 (454)
T PRK09427 264 LTRPQDAKAAYDAGAVYGGLI-FVE-------KSPRYVSLEQAQEIIAAAPL-RYVGVFRNADIEDIVDIAKQLSLAAVQ 334 (454)
T ss_pred CCCHHHHHHHHhCCCCEEeeE-eCC-------CCCCCCCHHHHHHHHHhCCC-CEEEEEeCCCHHHHHHHHHHcCCCEEE
Confidence 345788999999999998322 112 23333457788888776541 11233333 23344 566779999987
Q ss_pred ecCCCChhHHHHHHHhc-CCCCcEE--eecCCHHHHHHHHHhCCCEEEEec-CCCCCchHHHHHHHHHhhcceecccccC
Q 037779 120 ESEVLTPADEENHINKH-NFRVPFV--CGCRNLGESLRRIREGAAMIRTKG-EAGTGNIVEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~~l~v~--~~v~t~~ea~~a~~~Gad~I~v~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (310)
.+...++. ..+.+++. ..++.++ ..+.+..+. ....++|++-+.. .+++|
T Consensus 335 LHG~e~~~-~~~~l~~~~~~~~~iikai~v~~~~~~--~~~~~~d~~LlDs~~GGtG----------------------- 388 (454)
T PRK09427 335 LHGDEDQA-YIDALREALPKTCQIWKAISVGDTLPA--RDLQHVDRYLLDNGQGGTG----------------------- 388 (454)
T ss_pred eCCCCCHH-HHHHHHhhcCCCCeEEEEeecCchhhh--hhhcCCCEEEEcCCCCCCC-----------------------
Confidence 55444444 44455542 2223333 233322221 1123577776542 11222
Q ss_pred chhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC---CCHHHHHHHHHHHH
Q 037779 196 DDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS---GDPVRRARAIVQAV 272 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~---~dp~~~~~~~~~~~ 272 (310)
..-+|.++.... ..|+ +.+||| +|+|+.+++..+..||=|.|.+=.. .| ...+++|.+.+
T Consensus 389 ----------~~~DW~~l~~~~---~~p~--iLAGGL-~peNV~~ai~~~P~gVDVsSGVE~~pG~KD-~~Ki~~Fi~~v 451 (454)
T PRK09427 389 ----------QTFDWSLLPGQS---LDNV--LLAGGL-NPDNCQQAAQLGCAGLDFNSGVESAPGIKD-AQKLASVFQTL 451 (454)
T ss_pred ----------CccChHHhhhcc---cCCE--EEECCC-CHHHHHHHHhcCCCEEEeCCcccCCCCCcC-HHHHHHHHHHH
Confidence 123566554322 4688 458999 6999999999999999999999754 24 45778888877
Q ss_pred HcC
Q 037779 273 TNY 275 (310)
Q Consensus 273 ~~~ 275 (310)
+.|
T Consensus 452 r~~ 454 (454)
T PRK09427 452 RAY 454 (454)
T ss_pred hhC
Confidence 643
No 232
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.69 E-value=0.00056 Score=63.36 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=66.0
Q ss_pred ChhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+..+.++.+++..+ ...+.+++.|.+|++.++++|+|+|..... +++.+
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnm--------------------------spe~l---- 231 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNM--------------------------SLEQI---- 231 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH----
Confidence 34555666666433 578999999999999999999999987421 11111
Q ss_pred ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.+..+++ ++.+ -++||| +++++.++.++|+|.+.+|+-.+.++
T Consensus 232 ------~~av~~~~~--~~~l--eaSGGI-~~~ni~~yA~tGVD~Is~galthsa~ 276 (290)
T PRK06559 232 ------EQAITLIAG--RSRI--ECSGNI-DMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred ------HHHHHHhcC--ceEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCc
Confidence 122222222 3333 789999 69999999999999999999665443
No 233
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.67 E-value=0.00037 Score=67.60 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCCcEEeec---CCHHHHHHHHHhC-CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 128 DEENHINKHNFRVPFVCGC---RNLGESLRRIREG-AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 128 ~~~~~~~~~~~~l~v~~~v---~t~~ea~~a~~~G-ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
++++.+++...+.++++.. .+.+++.++.+.+ +|+|.+.|..+++... ......
T Consensus 203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~--------------~~~~~~-------- 260 (392)
T cd02808 203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAA--------------PLTFID-------- 260 (392)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCC--------------cccccc--------
Confidence 4455555544336665532 2577888887766 9999998664322100 000000
Q ss_pred ccCC-CcHHHHHHHHhc-------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 204 KNIA-APYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~-~~~~l~~~i~~~-------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+++ +....+..+.+. .++|| |++|||.++.|+.+++.+|||+|.+|++++.+
T Consensus 261 -~~g~pt~~~L~~v~~~~~~~~~~~~i~v--iasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 261 -HVGLPTELGLARAHQALVKNGLRDRVSL--IASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred -cCCccHHHHHHHHHHHHHHcCCCCCCeE--EEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 011 112233333221 25888 67999999999999999999999999999964
No 234
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.66 E-value=4.4e-05 Score=68.36 Aligned_cols=56 Identities=23% Similarity=0.482 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~ 267 (310)
.+..+..+...++|+ |.+|||.|+++++++.++|||.|++|++|.+..+..+..+.
T Consensus 171 ~~v~~~~~~~~~~~L--ivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~ 226 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPL--IVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALET 226 (230)
T ss_dssp HHHHHHHHHSSSSEE--EEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTH
T ss_pred HHHHHHHHhcCCccE--EEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHH
Confidence 556655566668888 67999999999999999999999999999996653443333
No 235
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.64 E-value=0.0013 Score=61.00 Aligned_cols=93 Identities=10% Similarity=0.120 Sum_probs=64.5
Q ss_pred hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779 126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205 (310)
Q Consensus 126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+.++.+++..+...+.+++.|.+|++.++++|+|+|..... +++.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~--------------------------~~e~l------ 223 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF--------------------------SPQQA------ 223 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH------
Confidence 4455666666555677999999999999999999999987421 11111
Q ss_pred CCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 206 IAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+.++.+++ ..++.+ -++||| |++++.++.++|+|.+.+|+- +.+
T Consensus 224 ----~~av~~~~~~~~~~~l--eaSGGI-~~~ni~~yA~tGvD~Is~gal-~~a 269 (284)
T PRK06096 224 ----TEIAQIAPSLAPHCTL--SLAGGI-NLNTLKNYADCGIRLFITSAP-YYA 269 (284)
T ss_pred ----HHHHHHhhccCCCeEE--EEECCC-CHHHHHHHHhcCCCEEEECcc-ccC
Confidence 122233321 123333 689999 699999999999999987775 554
No 236
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.63 E-value=0.0011 Score=59.37 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=31.9
Q ss_pred HHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 210 ~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
.+.++.+.+. .+++| .++|||.|.+++.+++++||+-+...+
T Consensus 166 ~~~v~~m~~~~~~~~~I--KasGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 166 VEDVKLMRETVGPRVGV--KASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred HHHHHHHHHHhCCCceE--EeeCCcCCHHHHHHHHHcCcceEccCc
Confidence 3444444443 35788 679999999999999999999887755
No 237
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.63 E-value=0.00053 Score=61.76 Aligned_cols=163 Identities=19% Similarity=0.242 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh--cCcceEeecccc------c-----hHHHHHHHH
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS--VTIPVMAKARIG------H-----FVEAQILEA 112 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~--~~lPv~~kd~i~------~-----~~~~~~~~~ 112 (310)
+.++.+.+.|+++|. + .+ .+ ....+..-.. ..++++++.-.+ . ...++.+.+
T Consensus 23 ~~~~~a~~~~~~av~-v-----~p-~~--------~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~ 87 (236)
T PF01791_consen 23 KLCREAIEYGFDAVC-V-----TP-GY--------VKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR 87 (236)
T ss_dssp HHHHHHHHHTSSEEE-E-----EG-GG--------HHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEE-E-----CH-HH--------HHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence 578889999999983 3 12 11 2222222222 235555543222 1 235567788
Q ss_pred cCCCeeeec-CC---CC--h----hHHHHHHHh-cCCCCcEEeecC-CHHH-------------HHHHHHhCCCEEEEec
Q 037779 113 IGVDYVDES-EV---LT--P----ADEENHINK-HNFRVPFVCGCR-NLGE-------------SLRRIREGAAMIRTKG 167 (310)
Q Consensus 113 aGad~v~~~-~~---~~--~----~~~~~~~~~-~~~~l~v~~~v~-t~~e-------------a~~a~~~Gad~I~v~g 167 (310)
.|||.|... .. .+ . .++.+..+. +..+++++++.. +..+ ++.+.++|+|+|++.-
T Consensus 88 ~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~t 167 (236)
T PF01791_consen 88 LGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTST 167 (236)
T ss_dssp TT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred cCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecC
Confidence 999998621 10 11 1 122222223 456788877632 2223 2344578999999872
Q ss_pred CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCC----EEEEccCCC------CCHHH
Q 037779 168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLP----VVHFAAGGV------ATPAD 237 (310)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iP----Vv~ia~GGI------~t~~d 237 (310)
....+.. ..+.+..+.+.+..++| | .++||| .+.++
T Consensus 168 g~~~~~t--------------------------------~~~~~~~~~~~~~~~~p~~~~V--k~sGGi~~~~~~~~l~~ 213 (236)
T PF01791_consen 168 GKPVGAT--------------------------------PEDVELMRKAVEAAPVPGKVGV--KASGGIDAEDFLRTLED 213 (236)
T ss_dssp SSSSCSH--------------------------------HHHHHHHHHHHHTHSSTTTSEE--EEESSSSHHHHHHSHHH
T ss_pred Ccccccc--------------------------------HHHHHHHHHHHHhcCCCcceEE--EEeCCCChHHHHHHHHH
Confidence 2111110 01233444444444678 8 568999 99999
Q ss_pred HHHHHHcCC--CEEEEcccccc
Q 037779 238 AAMMMQLGC--DGVFVGSGVFK 257 (310)
Q Consensus 238 i~~~~~~Ga--dgV~VGsai~~ 257 (310)
+.+++++|| .|+..|+.|++
T Consensus 214 a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 214 ALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHHHTTHSEEEEEEHHHHHT
T ss_pred HHHHHHcCChhHHHHHHHHHHc
Confidence 999999999 99999999886
No 238
>PLN02363 phosphoribosylanthranilate isomerase
Probab=97.62 E-value=0.023 Score=52.05 Aligned_cols=186 Identities=18% Similarity=0.163 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCc-ce-Eeecccc-chHHH-HHHHHcCCCe
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTI-PV-MAKARIG-HFVEA-QILEAIGVDY 117 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~l-Pv-~~kd~i~-~~~~~-~~~~~aGad~ 117 (310)
..+++.|+.+.++|++++-.+ ..+ .|-+.-+++..+++.+.+.- ++ .+..+.+ ..+++ +.+...|.|.
T Consensus 54 it~~eda~~a~~~GaD~iGfI-f~~-------~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~ 125 (256)
T PLN02363 54 ITSARDAAMAVEAGADFIGMI-LWP-------KSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLEL 125 (256)
T ss_pred CCcHHHHHHHHHcCCCEEEEe-cCC-------CCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCE
Confidence 456899999999999998332 112 23334457888888765521 11 1223332 22343 5667799999
Q ss_pred eeecCCCChhHHHHHHHhcCCCCcEEeecCCHHH-HHHHHH---hCCCEEEEecC-CCCCchHHHHHHHHHhhcceeccc
Q 037779 118 VDESEVLTPADEENHINKHNFRVPFVCGCRNLGE-SLRRIR---EGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 118 v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~e-a~~a~~---~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
|..+...++ +..+.++.. ..+.-.+.+.+..+ ...... ..+|++-+... +++|
T Consensus 126 VQLHG~e~~-~~~~~l~~~-~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~GGtG-------------------- 183 (256)
T PLN02363 126 VQLHGNGSR-AAFSRLVRE-RKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSATGGSG-------------------- 183 (256)
T ss_pred EEECCCCCH-HHHHHhhcC-CcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCCCCCC--------------------
Confidence 975544343 344444421 22222223333222 122211 23676655422 1222
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccC----CCHHHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS----GDPVRRARA 267 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~----~dp~~~~~~ 267 (310)
..-+|+.+....-....|+ +.+||| +++++.++++ .+..||=|.|.+=.. .| .+.+++
T Consensus 184 -------------~t~DW~~l~~~~~~~~~p~--iLAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG~~KD-~~KI~~ 246 (256)
T PLN02363 184 -------------KGFNWQNFKLPSVRSRNGW--LLAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDGIRKD-PSKISS 246 (256)
T ss_pred -------------CccCHHHhcccccccCCCE--EEECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCCcccC-HHHHHH
Confidence 1224554431000123587 458999 6999999986 699999999999753 23 356677
Q ss_pred HHHHHHc
Q 037779 268 IVQAVTN 274 (310)
Q Consensus 268 ~~~~~~~ 274 (310)
|.+.+++
T Consensus 247 fv~~vr~ 253 (256)
T PLN02363 247 FISAVKS 253 (256)
T ss_pred HHHHHHh
Confidence 7777653
No 239
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.62 E-value=0.00064 Score=62.83 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=65.1
Q ss_pred hhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 126 PADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+.++.++++.+ ...+.+++.|.+|++.+++.|+|+|..... +++.+
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~--------------------------s~e~l----- 228 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNM--------------------------TPDTL----- 228 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCC--------------------------CHHHH-----
Confidence 4455566665433 477999999999999999999999987521 11110
Q ss_pred cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+.++.++ .+.|+ -++||| +++++.++.++|+|.+.+|+..+.+
T Consensus 229 -----~~av~~~~--~~~~l--eaSGGI-~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 229 -----REAVAIVA--GRAIT--EASGRI-TPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred -----HHHHHHhC--CCceE--EEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 11222222 23455 679999 6999999999999999999966544
No 240
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.61 E-value=0.0014 Score=62.82 Aligned_cols=55 Identities=29% Similarity=0.478 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 037779 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~ 267 (310)
.....++....+|+ |+.|+|.+++++.++++.| +|-|.+|+.+...++....+++
T Consensus 278 ~~a~~i~~~~~~pv--i~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~ 333 (363)
T COG1902 278 EFAARIKKAVRIPV--IAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAE 333 (363)
T ss_pred HHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHc
Confidence 34455666567999 6689999999999999997 9999999999998886655443
No 241
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.59 E-value=0.00085 Score=61.97 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=64.9
Q ss_pred hhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779 126 PADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+.++.+++..+ ...+.+++.|++|+..+++.|+|+|..... +++.+
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~--------------------------s~e~l----- 227 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF--------------------------SLDDL----- 227 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC--------------------------CHHHH-----
Confidence 3455555555333 478999999999999999999999987421 11111
Q ss_pred cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.+..++. ...+ -++||| |++++.++.++|+|.+.+|+-.+..+
T Consensus 228 -----~~av~~~~~--~~~l--eaSGgI-~~~ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 228 -----REGVELVDG--RAIV--EASGNV-NLNTVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred -----HHHHHHhCC--CeEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCc
Confidence 122222322 2233 689999 69999999999999999999666544
No 242
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.58 E-value=0.00064 Score=61.37 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=42.8
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
...++++.+.+...+|+ .+.|||.|.+++++++++||+-|++||..++.
T Consensus 63 ~n~~~I~~i~~~~~~pi--~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 63 REFDYIKSLRRLTTKDI--EVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD 111 (234)
T ss_pred chHHHHHHHHhhcCCeE--EEcCCcCCHHHHHHHHHCCCCEEEECchHhcC
Confidence 35778888888778898 56999999999999999999999999987774
No 243
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.56 E-value=0.00056 Score=61.22 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=43.8
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
..+++++.+.+..++|+ ++.|||.+++++.++++.|||.|++|+..+..+
T Consensus 60 ~~~~~i~~i~~~~~~pv--~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp 109 (234)
T cd04732 60 VNLELIEEIVKAVGIPV--QVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNP 109 (234)
T ss_pred CCHHHHHHHHHhcCCCE--EEeCCcCCHHHHHHHHHcCCCEEEECchHHhCh
Confidence 35778888888778899 568999999999999999999999999999753
No 244
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.54 E-value=0.0019 Score=60.28 Aligned_cols=112 Identities=21% Similarity=0.107 Sum_probs=79.1
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-- 122 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-- 122 (310)
+.++.+.+.|+++| ++| .+|... .. ...+.++++++.+++||++|.. .+.+.++.+.++|+|.|..+.
T Consensus 133 ~~i~~~~~~g~~~i-~l~~~~p~~~-----~~--~~~~~i~~l~~~~~~pvivK~v-~s~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 133 DLLRRAEAAGYKAL-VLTVDTPVLG-----RR--LTWDDLAWLRSQWKGPLILKGI-LTPEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred HHHHHHHHcCCCEE-EEecCCCCCC-----CC--CCHHHHHHHHHhcCCCEEEeec-CCHHHHHHHHHCCCCEEEEcCCC
Confidence 56788888999998 565 333211 11 2468899999999999999964 344678899999999986321
Q ss_pred ------CCChhHHHHHHHh-cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779 123 ------VLTPADEENHINK-HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 123 ------~~~~~~~~~~~~~-~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
..+..+.+..+.+ ....+++++ ++++..++.+++.+|||.|.+.
T Consensus 204 G~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 204 GRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 1122344444433 222477777 4999999999999999999986
No 245
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.52 E-value=0.00038 Score=62.31 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=44.2
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
...++++.+.+..++|| ++.|||.+.+++.+++++||++|++|++++..+
T Consensus 61 ~~~~~i~~i~~~~~~pv--~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~ 110 (233)
T PRK00748 61 VNLELIEAIVKAVDIPV--QVGGGIRSLETVEALLDAGVSRVIIGTAAVKNP 110 (233)
T ss_pred ccHHHHHHHHHHCCCCE--EEcCCcCCHHHHHHHHHcCCCEEEECchHHhCH
Confidence 45778888877778899 569999999999999999999999999999854
No 246
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.52 E-value=0.02 Score=53.13 Aligned_cols=174 Identities=14% Similarity=0.185 Sum_probs=105.4
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
...+++++.++..|.++. |...+ +.|.. .-...++...+..++||.++ |.-.+++.+..+.++|.+.|-+. +.
T Consensus 33 avi~AAe~~~sPvIl~~~--~~~~~-~~g~~--~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~ 107 (283)
T PRK07998 33 SILNAIERSGLPNFIQIA--PTNAQ-LSGYD--YIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAA 107 (283)
T ss_pred HHHHHHHHhCCCEEEECc--HhHHh-hCCHH--HHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 347778888888875551 11111 12210 00234556667789999887 33335677788889999998732 22
Q ss_pred CChh-------HHHHHHHhcCCCCcEEee-----------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779 124 LTPA-------DEENHINKHNFRVPFVCG-----------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA 177 (310)
Q Consensus 124 ~~~~-------~~~~~~~~~~~~l~v~~~-----------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~ 177 (310)
++.+ ++.+..+. .|+.+=.+ .++++++.+-. +.|+|.+.+. |..++.
T Consensus 108 l~~eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~----- 180 (283)
T PRK07998 108 LPFEENIAFTKEAVDFAKS--YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGL----- 180 (283)
T ss_pred CCHHHHHHHHHHHHHHHHH--cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccC-----
Confidence 3332 23333333 33322111 24667776654 5688877654 332221
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++. ..-++++++.+.+..++|+++=-++|+ +.+++++++++|+..|=++|.+..
T Consensus 181 -------------Y~~------------p~l~~~~l~~I~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 181 -------------EDI------------PRIDIPLLKRIAEVSPVPLVIHGGSGI-PPEILRSFVNYKVAKVNIASDLRK 234 (283)
T ss_pred -------------CCC------------CCcCHHHHHHHHhhCCCCEEEeCCCCC-CHHHHHHHHHcCCcEEEECHHHHH
Confidence 110 122578899998888999976555566 358899999999999999998876
No 247
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.50 E-value=0.00046 Score=63.19 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
....++++.+.+...+|| +++|||.+.+++.+++..|+++|++|++++..+
T Consensus 60 ~~n~~~i~~i~~~~~~pv--~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~ 110 (258)
T PRK01033 60 EPNYELIENLASECFMPL--CYGGGIKTLEQAKKIFSLGVEKVSINTAALEDP 110 (258)
T ss_pred cccHHHHHHHHHhCCCCE--EECCCCCCHHHHHHHHHCCCCEEEEChHHhcCH
Confidence 446788888888778999 679999999999999999999999999998854
No 248
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.49 E-value=0.021 Score=50.70 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=108.9
Q ss_pred cCCCHHHHHHHHHcCC-cEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch----HHHHHHHHcCC
Q 037779 41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF----VEAQILEAIGV 115 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~----~~~~~~~~aGa 115 (310)
+..+.+..+.+.+.|. +++ --| |+-.+ ..|. ..-.+.++++++..+-||.+..+-.+. ++++.+.+.+-
T Consensus 5 Dsa~~~ei~~~~~~~~i~Gv-TTN--Psll~-k~~~--~~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~~~ 78 (211)
T cd00956 5 DTADLEEIKKASETGLLDGV-TTN--PSLIA-KSGR--IDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLGG 78 (211)
T ss_pred cCCCHHHHHHHHhcCCcCcc-ccC--HHHHH-hcCC--cCHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 3456677777777655 454 111 22222 1121 112466788888777777765443322 34555555533
Q ss_pred Ceee-ecCCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceeccc
Q 037779 116 DYVD-ESEVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
..++ ++......+.++.+++. ++.+.+. +.|++++..+.++||+||.+. |+..
T Consensus 79 ~~~iKIP~T~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~---------------------- 134 (211)
T cd00956 79 NVVVKIPVTEDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRID---------------------- 134 (211)
T ss_pred CEEEEEcCcHhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEEecChHh----------------------
Confidence 4444 55433334555666554 4555543 789999999999999998775 3311
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRA 265 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~ 265 (310)
....| +.++++.+.+. .++|.- |...|+.++.++.++.++|+|.|-+.-.+++ .+.....+
T Consensus 135 ~~g~d-----------g~~~i~~i~~~~~~~~~~tk-il~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v 202 (211)
T cd00956 135 DLGGD-----------GMELIREIRTIFDNYGFDTK-ILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGV 202 (211)
T ss_pred hcCCC-----------HHHHHHHHHHHHHHcCCCce-EEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHH
Confidence 00111 23333333221 233422 1258899999999999999999999976665 33344555
Q ss_pred HHHHHHH
Q 037779 266 RAIVQAV 272 (310)
Q Consensus 266 ~~~~~~~ 272 (310)
+.|.+.+
T Consensus 203 ~~F~~d~ 209 (211)
T cd00956 203 EKFLEDW 209 (211)
T ss_pred HHHHHHh
Confidence 6665443
No 249
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.45 E-value=0.0061 Score=54.25 Aligned_cols=124 Identities=11% Similarity=0.109 Sum_probs=84.6
Q ss_pred HHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcC---CCCcEEee-cCCHHHHHHHH
Q 037779 83 LIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHN---FRVPFVCG-CRNLGESLRRI 156 (310)
Q Consensus 83 ~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~---~~l~v~~~-v~t~~ea~~a~ 156 (310)
.++.+.+.-=+||+..+.... ...++.+.+.|...+-++ ......+.++.++++. +++.++++ +.|.++++.+.
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence 344555443467766544332 134577888999998644 2223446666676543 35788885 88999999999
Q ss_pred HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH
Q 037779 157 REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA 236 (310)
Q Consensus 157 ~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~ 236 (310)
++|++|+.. |. .+.++++...+ .++|+ + =|..|++
T Consensus 86 ~aGA~Fivs--P~--------------------------------------~~~~v~~~~~~-~~i~~--i--PG~~T~~ 120 (213)
T PRK06552 86 LAGAQFIVS--PS--------------------------------------FNRETAKICNL-YQIPY--L--PGCMTVT 120 (213)
T ss_pred HcCCCEEEC--CC--------------------------------------CCHHHHHHHHH-cCCCE--E--CCcCCHH
Confidence 999999873 11 12345555444 46788 4 6888999
Q ss_pred HHHHHHHcCCCEEEE
Q 037779 237 DAAMMMQLGCDGVFV 251 (310)
Q Consensus 237 di~~~~~~GadgV~V 251 (310)
++.+++++|+|.+-+
T Consensus 121 E~~~A~~~Gad~vkl 135 (213)
T PRK06552 121 EIVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999997
No 250
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.42 E-value=0.0007 Score=61.03 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=42.7
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
..+.++.+.+...+|+ ++.|||++.+++..++++||++|++|+..++.++
T Consensus 64 ~~~~i~~i~~~~~~~l--~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~ 113 (241)
T PRK13585 64 NAEAIEKIIEAVGVPV--QLGGGIRSAEDAASLLDLGVDRVILGTAAVENPE 113 (241)
T ss_pred cHHHHHHHHHHcCCcE--EEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChH
Confidence 4667777777667899 5699999999999999999999999999987543
No 251
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.41 E-value=0.023 Score=51.57 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee------ccccc-------hHHHHH
Q 037779 43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK------ARIGH-------FVEAQI 109 (310)
Q Consensus 43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k------d~i~~-------~~~~~~ 109 (310)
.+++-+..+.++||+.| -|. ... ..+|- -++...++.+++.+++||.+. +|.-+ ..+++.
T Consensus 9 ~s~~~a~~A~~~GAdRi-ELc---~~L-~~GGl--TPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 9 YSMECALTAQQAGADRI-ELC---AAP-KEGGL--TPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred CCHHHHHHHHHcCCCEE-EEc---cCc-CCCCc--CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 45788999999999998 441 011 23343 466899999999999998763 33321 134566
Q ss_pred HHHcCCCeeee---c-C-CCChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHH
Q 037779 110 LEAIGVDYVDE---S-E-VLTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAV 178 (310)
Q Consensus 110 ~~~aGad~v~~---~-~-~~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~ 178 (310)
+.++|+|++.. + + .+..+.+.+.+... .++++.. .+.++.++. ...++|.+-|-++|-.. +.
T Consensus 82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a-~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~--~a---- 154 (248)
T PRK11572 82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA-GPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ--DA---- 154 (248)
T ss_pred HHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh-cCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC--CH----
Confidence 77799999872 1 2 12333343333332 1233222 123444433 34566766555543211 10
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
....+.++.+.+ ... .+ +++.||| +++++.++.++|+..+=..
T Consensus 155 ----------------------------~~g~~~L~~lv~~a~~-~~-Im~GgGV-~~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 155 ----------------------------EQGLSLIMELIAASDG-PI-IMAGAGV-RLSNLHKFLDAGVREVHSS 198 (248)
T ss_pred ----------------------------HHHHHHHHHHHHhcCC-CE-EEeCCCC-CHHHHHHHHHcCCCEEeeC
Confidence 012333344433 223 22 3789999 5999999988998877543
No 252
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.40 E-value=0.00072 Score=60.66 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
+.+.++++.+.+..++|| +++|||.+.+++.++++.|+++|++|++++..+
T Consensus 60 ~~n~~~~~~i~~~~~~pv--~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~ 110 (232)
T TIGR03572 60 EPLFELISNLAEECFMPL--TVGGGIRSLEDAKKLLSLGADKVSINTAALENP 110 (232)
T ss_pred CCCHHHHHHHHHhCCCCE--EEECCCCCHHHHHHHHHcCCCEEEEChhHhcCH
Confidence 346778888887778899 679999999999999999999999999999853
No 253
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.38 E-value=0.006 Score=53.89 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=80.0
Q ss_pred cceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCC
Q 037779 93 IPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEA 169 (310)
Q Consensus 93 lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~ 169 (310)
+||++.+.... ...++.+.+.|.+.+-++ ......+.++.++++.+++.+.++ +.|.++++.+.++|++|+.. +.
T Consensus 11 iaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs--P~ 88 (204)
T TIGR01182 11 VPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS--PG 88 (204)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC--CC
Confidence 56655543332 245678888999998644 223455667777766667888885 88999999999999999853 21
Q ss_pred CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779 170 GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV 249 (310)
. +.++++...+ .++|+ + =|+.||.++.+++++|++.|
T Consensus 89 ~--------------------------------------~~~v~~~~~~-~~i~~--i--PG~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 89 L--------------------------------------TPELAKHAQD-HGIPI--I--PGVATPSEIMLALELGITAL 125 (204)
T ss_pred C--------------------------------------CHHHHHHHHH-cCCcE--E--CCCCCHHHHHHHHHCCCCEE
Confidence 1 2344555444 36788 4 47789999999999999988
Q ss_pred EE
Q 037779 250 FV 251 (310)
Q Consensus 250 ~V 251 (310)
=+
T Consensus 126 Kl 127 (204)
T TIGR01182 126 KL 127 (204)
T ss_pred EE
Confidence 54
No 254
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0011 Score=58.90 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=43.6
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
..++++++.+...+|+ .+.|||.+.+|+++++.+|||-|.+.|+-...++
T Consensus 62 ~~~vv~r~A~~vfiPl--tVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~ 111 (256)
T COG0107 62 MLDVVERVAEQVFIPL--TVGGGIRSVEDARKLLRAGADKVSINSAAVKDPE 111 (256)
T ss_pred HHHHHHHHHhhceeee--EecCCcCCHHHHHHHHHcCCCeeeeChhHhcChH
Confidence 4677888888788999 5699999999999999999999999998777544
No 255
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.37 E-value=0.0007 Score=61.58 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=51.9
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhcc
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGL 288 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (310)
..++++.+.+..++|| .+.|||.+ +++.+++++||+.|++||+++..+ .-+|..+.+++++|
T Consensus 64 n~~~i~~i~~~~~~~v--~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~---------------~i~~~~~~~i~~~f 125 (253)
T TIGR02129 64 NDDAAKEALHAYPGGL--QVGGGIND-TNAQEWLDEGASHVIVTSWLFTKG---------------KFDLKRLKEIVSLV 125 (253)
T ss_pred cHHHHHHHHHhCCCCE--EEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCC---------------CCCHHHHHHHHHHh
Confidence 4677777777777899 56999985 999999999999999999888732 12344555555555
Q ss_pred C--Cceecccc
Q 037779 289 G--EAMVGIDL 297 (310)
Q Consensus 289 ~--~~~~~~~~ 297 (310)
| ...++||.
T Consensus 126 G~~~IvvsiD~ 136 (253)
T TIGR02129 126 GKDRLIVDLSC 136 (253)
T ss_pred CCCCEEEEEEE
Confidence 3 44555554
No 256
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=97.35 E-value=0.0029 Score=57.96 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=67.7
Q ss_pred ChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 125 TPADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+..+.++.+++..+. ..+-+++.|++|+++|+++|||+|..... +++.+
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm--------------------------~~e~~---- 222 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM--------------------------SPEEL---- 222 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC--------------------------CHHHH----
Confidence 466777777774444 45889999999999999999999998521 11111
Q ss_pred ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.+.++.+. ..-.+++=++||| |++++..+.+.|+|-+.+|.-.+..+
T Consensus 223 ------~~av~~l~--~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 223 ------KEAVKLLG--LAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred ------HHHHHHhc--cCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCc
Confidence 12222221 1114444679999 69999999999999999998766654
No 257
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=97.35 E-value=0.0018 Score=57.55 Aligned_cols=137 Identities=19% Similarity=0.306 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCCCcEEeecC--CHH-----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee---cccccCch
Q 037779 128 DEENHINKHNFRVPFVCGCR--NLG-----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR---VLRNMDDD 197 (310)
Q Consensus 128 ~~~~~~~~~~~~l~v~~~v~--t~~-----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~d 197 (310)
++++.+++.+ ..++++++ +.- .++.+.+.|+|++.+|+..+...+..+++.+++.+.... .++.....
T Consensus 40 ~~v~~l~~~~--~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~ 117 (213)
T TIGR01740 40 KIIDELAKLN--KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSL 117 (213)
T ss_pred HHHHHHHHcC--CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChh
Confidence 4455555532 36667763 221 234456789999999976554445556666555443311 22222110
Q ss_pred --------hHHhhhc--------cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH--H--------HHHHHHcCCCEEEE
Q 037779 198 --------EVFTFAK--------NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA--D--------AAMMMQLGCDGVFV 251 (310)
Q Consensus 198 --------~~~~~~~--------~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~--d--------i~~~~~~GadgV~V 251 (310)
.+++.++ +.....+.+..+++... ..+ +..+||+-.. . +..+.+.|+|-+++
T Consensus 118 ~~~~~~~~~v~~~a~~~~~~g~~g~v~~~~~~~~ir~~~~-~~~-~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVv 195 (213)
T TIGR01740 118 DYGEDTMEKVLEYAKEAKAFGLDGPVCSAEEAKEIRKFTG-DFL-ILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIV 195 (213)
T ss_pred hhCcCHHHHHHHHHHHhhhcCCeEEEeCHHHHHHHHHhcC-Cce-EEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEE
Confidence 1111111 11112344555555432 222 3469996321 2 27788999999999
Q ss_pred ccccccCCCHHHHHHHH
Q 037779 252 GSGVFKSGDPVRRARAI 268 (310)
Q Consensus 252 Gsai~~~~dp~~~~~~~ 268 (310)
||+|++++||.+.++++
T Consensus 196 Gr~I~~~~d~~~~~~~~ 212 (213)
T TIGR01740 196 GRGIYAAEDPVEAAKRI 212 (213)
T ss_pred ChhhcCCCCHHHHHHHh
Confidence 99999999999887765
No 258
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.33 E-value=0.006 Score=58.69 Aligned_cols=40 Identities=35% Similarity=0.519 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa 254 (310)
.+.+.+++ .++|| |+ |+|.|++++.+++++|||+|++|..
T Consensus 178 ~i~~~ik~-~~ipV--Ia-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 178 NLKEFIYE-LDVPV--IV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred HHHHHHHH-CCCCE--EE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 34444444 57899 43 8999999999999999999999953
No 259
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.33 E-value=0.0061 Score=53.71 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779 105 VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR 182 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~ 182 (310)
..++.+.+.|...+-++ ......+.++.++++.+++.+.++ +.|.++++.+.++|++|+..- +
T Consensus 20 ~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP------~--------- 84 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP------G--------- 84 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC------C---------
Confidence 34577888999988644 222345666667665567888885 889999999999999998741 1
Q ss_pred HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779 183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V 251 (310)
.+.++++...+ .++|+ + =|+.||.++..++++|++.|=+
T Consensus 85 -------------------------~~~~vi~~a~~-~~i~~--i--PG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 85 -------------------------TTQELLAAAND-SDVPL--L--PGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred -------------------------CCHHHHHHHHH-cCCCE--e--CCCCCHHHHHHHHHCCCCEEEE
Confidence 13445555554 46788 4 6778999999999999998854
No 260
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=97.30 E-value=0.025 Score=49.86 Aligned_cols=163 Identities=22% Similarity=0.309 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec------cccc-------hHHHHH
Q 037779 43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA------RIGH-------FVEAQI 109 (310)
Q Consensus 43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd------~i~~-------~~~~~~ 109 (310)
.+++-+..+.++||+.| -|. ... ..+|- -+++..++.+++.+++|+.+.. |.-+ .+++..
T Consensus 8 ~s~~~a~~A~~~GAdRi-ELc---~~l-~~GGl--TPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~ 80 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRI-ELC---SNL-EVGGL--TPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRM 80 (201)
T ss_dssp SSHHHHHHHHHTT-SEE-EEE---BTG-GGT-B-----HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEE-EEC---CCc-cCCCc--CcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHH
Confidence 45788999999999998 441 111 22343 4668899999999999987742 2211 135566
Q ss_pred HHHcCCCeeee---c-CC-CChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHH
Q 037779 110 LEAIGVDYVDE---S-EV-LTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAV 178 (310)
Q Consensus 110 ~~~aGad~v~~---~-~~-~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~ 178 (310)
+.++|+|.+.. + +. +..+.+.+.+...+ ++++.. .+.++.++. ...++|.+-|-++|-..+
T Consensus 81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~------- 152 (201)
T PF03932_consen 81 LRELGADGFVFGALTEDGEIDEEALEELIEAAG-GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT------- 152 (201)
T ss_dssp HHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT-TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS-------
T ss_pred HHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC-CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC-------
Confidence 77799999872 1 11 22233333333221 333322 123444443 333567666555432110
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-c-CCCCEEEEccCCCCCHHHHHHHHH-cCCCEEE
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-L-GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVF 250 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~-~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~ 250 (310)
.....+.++.+.+ . .++.| ++.||| +++++..+.+ +|+..+=
T Consensus 153 ---------------------------a~~g~~~L~~lv~~a~~~i~I--m~GgGv-~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 153 ---------------------------ALEGIENLKELVEQAKGRIEI--MPGGGV-RAENVPELVEETGVREIH 197 (201)
T ss_dssp ---------------------------TTTCHHHHHHHHHHHTTSSEE--EEESS---TTTHHHHHHHHT-SEEE
T ss_pred ---------------------------HHHHHHHHHHHHHHcCCCcEE--EecCCC-CHHHHHHHHHhhCCeEEe
Confidence 1112333343333 2 34555 679999 5999999997 8987653
No 261
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.29 E-value=0.0036 Score=58.47 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=66.7
Q ss_pred ChhHHHHHHHh----cCCCCcEEeecCCHHHHHHHHH------hCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779 125 TPADEENHINK----HNFRVPFVCGCRNLGESLRRIR------EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 125 ~~~~~~~~~~~----~~~~l~v~~~v~t~~ea~~a~~------~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
+..+.++.+++ ..+...+.+++.|.+|+..+++ +|+|+|.......++
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~---------------------- 242 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPL---------------------- 242 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccc----------------------
Confidence 34555555554 2244679999999999999999 999999875221111
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+.+ -..+.++.+.++.. ...|+ -++||| |++++.++.++|+|.+.+|+-.+..
T Consensus 243 --~~~------~~~~e~l~~av~~~~~~~~l--EaSGGI-t~~ni~~yA~tGVD~Is~Galthsa 296 (308)
T PLN02716 243 --ENG------DVDVSMLKEAVELINGRFET--EASGNV-TLDTVHKIGQTGVTYISSGALTHSV 296 (308)
T ss_pred --ccc------CCCHHHHHHHHHhhCCCceE--EEECCC-CHHHHHHHHHcCCCEEEeCccccCC
Confidence 000 01122233323221 23555 689999 6999999999999999999966543
No 262
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.28 E-value=0.012 Score=52.40 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=84.2
Q ss_pred HHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCC
Q 037779 84 IKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGA 160 (310)
Q Consensus 84 i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Ga 160 (310)
++.+.+.-=+||++.+-... ...++.+.+.|.+.+-++ ......+.++.+++.++++.++++ +.|.++++.+.++||
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCC
Confidence 34444433467766544432 234577788899998644 222344566677766677888886 778899999999999
Q ss_pred CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779 161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~ 240 (310)
+|+..-+. +.++++...+ ..+|. + =|+.||.++.+
T Consensus 89 ~FivsP~~----------------------------------------~~~vi~~a~~-~~i~~--i--PG~~TptEi~~ 123 (212)
T PRK05718 89 QFIVSPGL----------------------------------------TPPLLKAAQE-GPIPL--I--PGVSTPSELML 123 (212)
T ss_pred CEEECCCC----------------------------------------CHHHHHHHHH-cCCCE--e--CCCCCHHHHHH
Confidence 99875211 1244444444 45777 3 67889999999
Q ss_pred HHHcCCCEEEE
Q 037779 241 MMQLGCDGVFV 251 (310)
Q Consensus 241 ~~~~GadgV~V 251 (310)
++++|++.|-+
T Consensus 124 a~~~Ga~~vKl 134 (212)
T PRK05718 124 GMELGLRTFKF 134 (212)
T ss_pred HHHCCCCEEEE
Confidence 99999999988
No 263
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.28 E-value=0.0012 Score=59.78 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=44.6
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
...++++.+.+...+|| .+.|||.|.+++.+++.+||+.+.+||+.++.++
T Consensus 62 ~n~~~i~~i~~~~~~pv--~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~ 112 (241)
T PRK14024 62 SNRELLAEVVGKLDVKV--ELSGGIRDDESLEAALATGCARVNIGTAALENPE 112 (241)
T ss_pred ccHHHHHHHHHHcCCCE--EEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHH
Confidence 35678888888778999 5699999999999999999999999999998544
No 264
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.21 E-value=0.0071 Score=58.09 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=44.5
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCC------------------CCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGV------------------ATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI------------------~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~ 265 (310)
.+.+...+++..++|| ++.||| .|++++.++++.| +|.|++|++++..++....+
T Consensus 268 ~~~~~~~~k~~~~~pv--~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~ 341 (361)
T cd04747 268 ELNLAGWTKKLTGLPT--ITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV 341 (361)
T ss_pred chhHHHHHHHHcCCCE--EEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHH
Confidence 3556677777778999 568999 5899999999875 99999999999977765443
No 265
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.20 E-value=0.0023 Score=57.71 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
...++++.+.+...+|+ .+.|||.+.+++.+++..||+-|++||..+..
T Consensus 65 ~n~~~i~~i~~~~~~~v--~vgGGir~~edv~~~l~~Ga~~viigt~~~~~ 113 (233)
T cd04723 65 DNDEAIRELAAAWPLGL--WVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred ccHHHHHHHHHhCCCCE--EEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence 35678888887667898 46999999999999999999999999988875
No 266
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.19 E-value=0.015 Score=51.97 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=83.2
Q ss_pred hHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeecC-CCChhHHHHHHH----hcCCCCcEEee-cCCHHHHH
Q 037779 81 PQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDESE-VLTPADEENHIN----KHNFRVPFVCG-CRNLGESL 153 (310)
Q Consensus 81 ~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~~-~~~~~~~~~~~~----~~~~~l~v~~~-v~t~~ea~ 153 (310)
.+.++.+.+.-=+||++.+...+ ...++.+.+.|...+-++- .....+.++.+. ++.+++.++++ +.|.++++
T Consensus 6 ~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 6 IAVLTAMKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred HHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 34555555443467766544432 2345778889999886442 112334444443 34456888885 88999999
Q ss_pred HHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCC
Q 037779 154 RRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 154 ~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~ 233 (310)
.+.++|++|+..-+ .+.++++...+ .++|+ + =|+.
T Consensus 86 ~a~~aGA~FiVsP~----------------------------------------~~~~v~~~~~~-~~i~~--i--PG~~ 120 (222)
T PRK07114 86 LYIQLGANFIVTPL----------------------------------------FNPDIAKVCNR-RKVPY--S--PGCG 120 (222)
T ss_pred HHHHcCCCEEECCC----------------------------------------CCHHHHHHHHH-cCCCE--e--CCCC
Confidence 99999999987411 12345555554 46788 4 6788
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 037779 234 TPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 234 t~~di~~~~~~GadgV~V 251 (310)
||.++.+++++|++.|=+
T Consensus 121 TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 121 SLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998865
No 267
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.18 E-value=0.089 Score=47.74 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=100.2
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--CCCCC----hHHHHHHHhhcCcceEeecccc--ch----HHHH
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARIG--HF----VEAQ 108 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i~--~~----~~~~ 108 (310)
.+.|+-.|+.++++|++++..-- .-.....|. ...-+ ...++.|.+.+++|+++..-.+ .. ..+.
T Consensus 15 ~~~D~~sA~~~e~~G~~ai~~s~---~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 15 GAWDALSARLAERAGFKAIYTSG---AGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVR 91 (243)
T ss_pred CCCCHHHHHHHHHcCCCEEEecc---HHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHH
Confidence 45567889999999999972210 000011111 00111 3345667777899998853332 21 2345
Q ss_pred HHHHcCCCeeeec--------------CCCChhHHHHHHHh-----cC-CCCcEEee-----c--CCHHHH----HHHHH
Q 037779 109 ILEAIGVDYVDES--------------EVLTPADEENHINK-----HN-FRVPFVCG-----C--RNLGES----LRRIR 157 (310)
Q Consensus 109 ~~~~aGad~v~~~--------------~~~~~~~~~~~~~~-----~~-~~l~v~~~-----v--~t~~ea----~~a~~ 157 (310)
.+.++|+++|.+- ..+++++..+.++. .+ .++.+++. . ...+|+ +.+.+
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE 171 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence 6677999999851 12345555554433 11 24555555 2 234443 33446
Q ss_pred hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH
Q 037779 158 EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 158 ~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d 237 (310)
+|||.+.+.++. +.+.++.+.+..+.|+++....+-. .-.
T Consensus 172 AGAD~v~v~~~~---------------------------------------~~~~~~~~~~~~~~Pl~~~~~~~~~-~~~ 211 (243)
T cd00377 172 AGADGIFVEGLK---------------------------------------DPEEIRAFAEAPDVPLNVNMTPGGN-LLT 211 (243)
T ss_pred cCCCEEEeCCCC---------------------------------------CHHHHHHHHhcCCCCEEEEecCCCC-CCC
Confidence 788887775320 2344555666567898765444321 246
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 037779 238 AAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 238 i~~~~~~GadgV~VGsai~~ 257 (310)
..++.++|++-|..|..+++
T Consensus 212 ~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 212 VAELAELGVRRVSYGLALLR 231 (243)
T ss_pred HHHHHHCCCeEEEEChHHHH
Confidence 77788899999999998776
No 268
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.18 E-value=0.015 Score=50.47 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCcEEEecccccch-hhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779 45 PEQARIAEEAGACAVMALERVPAD-IRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E 122 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d-~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~ 122 (310)
.+.++.+.++|++.| -+- . |. .|. ....+++++|++.. .+++.. +.+.++...+.++|+|.|-.+ .
T Consensus 54 ~~ev~~l~~aGadII-AlD-a-T~R~Rp------~~l~~li~~i~~~~-~l~MAD--ist~ee~~~A~~~G~D~I~TTLs 121 (192)
T PF04131_consen 54 LKEVDALAEAGADII-ALD-A-TDRPRP------ETLEELIREIKEKY-QLVMAD--ISTLEEAINAAELGFDIIGTTLS 121 (192)
T ss_dssp HHHHHHHHHCT-SEE-EEE---SSSS-S------S-HHHHHHHHHHCT-SEEEEE---SSHHHHHHHHHTT-SEEE-TTT
T ss_pred HHHHHHHHHcCCCEE-EEe-c-CCCCCC------cCHHHHHHHHHHhC-cEEeee--cCCHHHHHHHHHcCCCEEEcccc
Confidence 478999999999987 331 0 11 111 12266788999887 555544 456688889999999998621 1
Q ss_pred C-------C-ChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEec
Q 037779 123 V-------L-TPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 123 ~-------~-~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g 167 (310)
. . +..++++.+.+. +.+++++ ++|++++.+++++||+.|.|.+
T Consensus 122 GYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 122 GYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp TSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred cCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 1 1 122566666553 6888886 8999999999999999998863
No 269
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.17 E-value=0.0076 Score=56.04 Aligned_cols=117 Identities=25% Similarity=0.356 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHH----HHHHHhhcCcceEeeccccc---hHHHHHHHHcCCCe
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQL----IKQIKSSVTIPVMAKARIGH---FVEAQILEAIGVDY 117 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~----i~~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad~ 117 (310)
+.|+.+.++|+++| .+| .+|.-.+ .|.....+++. ++++++.+++||++|..... .+.++.+.++|+|.
T Consensus 106 ~~a~~~~~~G~d~i-ElN~~cP~~~~--~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~ 182 (296)
T cd04740 106 EVAEKLADAGADAI-ELNISCPNVKG--GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADG 182 (296)
T ss_pred HHHHHHHHcCCCEE-EEECCCCCCCC--CcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCE
Confidence 67888999999998 787 4443211 13323334554 56677777999999954432 13456788899998
Q ss_pred eeec--------CC-------------CC-------hhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779 118 VDES--------EV-------------LT-------PADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 118 v~~~--------~~-------------~~-------~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
+... +. ++ ..+.++.+++. .+++++. +++|.+++.++++.|||.|.+.
T Consensus 183 i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 183 LTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred EEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 7521 00 00 01344444442 3566655 4899999999999999999885
No 270
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.16 E-value=0.0059 Score=53.60 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=74.8
Q ss_pred cceEeeccccch-HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCC
Q 037779 93 IPVMAKARIGHF-VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEA 169 (310)
Q Consensus 93 lPv~~kd~i~~~-~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~ 169 (310)
+||+........ ..++.+.+.|...+-++ ......+.++.++++.+++.+.++ +.|.++++.+.++||+|+..-
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP--- 87 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP--- 87 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES---
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC---
Confidence 566655444322 45678888999987644 222345677767766678889885 899999999999999998741
Q ss_pred CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779 170 GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV 249 (310)
+ .+.++++...+ .++|+ + =|+.||.++.+++++|++.|
T Consensus 88 ---~----------------------------------~~~~v~~~~~~-~~i~~--i--PG~~TptEi~~A~~~G~~~v 125 (196)
T PF01081_consen 88 ---G----------------------------------FDPEVIEYARE-YGIPY--I--PGVMTPTEIMQALEAGADIV 125 (196)
T ss_dssp ---S------------------------------------HHHHHHHHH-HTSEE--E--EEESSHHHHHHHHHTT-SEE
T ss_pred ---C----------------------------------CCHHHHHHHHH-cCCcc--c--CCcCCHHHHHHHHHCCCCEE
Confidence 1 12345555554 35787 3 57779999999999999988
Q ss_pred EE
Q 037779 250 FV 251 (310)
Q Consensus 250 ~V 251 (310)
=+
T Consensus 126 K~ 127 (196)
T PF01081_consen 126 KL 127 (196)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 271
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.16 E-value=0.0025 Score=64.20 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=66.5
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCH-----------HHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATP-----------ADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD 277 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~-----------~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~ 277 (310)
..++++.+.+...+|+ -+.|||.|. +++.+++++|||-|.+||+.++ ||+++. .. -+..+
T Consensus 302 ~~~~i~~i~~~~~ip~--~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~--~~~~~~----~~-~~~~~ 372 (538)
T PLN02617 302 MLEVLRRASENVFVPL--TVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVY--AAEEYI----AS-GVKTG 372 (538)
T ss_pred HHHHHHHHHhhCCCCE--EEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHh--Chhhhh----cc-ccccC
Confidence 3678888888788999 569999997 6699999999999999998888 444333 11 15567
Q ss_pred hhhHHhhhhccCC--ceeccccccch
Q 037779 278 PDVLAEVSCGLGE--AMVGIDLNDVK 301 (310)
Q Consensus 278 ~~~~~~~~~~~~~--~~~~~~~~~~~ 301 (310)
|..+.++++.||. ..++||..+.+
T Consensus 373 p~~i~~~~~~fg~q~ivvsiD~k~~~ 398 (538)
T PLN02617 373 KTSIEQISRVYGNQAVVVSIDPRRVY 398 (538)
T ss_pred HHHHHHHHHHcCCceEEEEEecCcCc
Confidence 9999999999965 58888876653
No 272
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=97.15 E-value=0.0044 Score=54.40 Aligned_cols=182 Identities=23% Similarity=0.273 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHH-HHHHHHcCCCeee
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVE-AQILEAIGVDYVD 119 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~-~~~~~~aGad~v~ 119 (310)
..+++.++.+.+.|++.+-.. ..|. |-+.-+++..+++.+.+. |..+..+.+ ..+. .+.+..++.|.|.
T Consensus 6 i~~~~da~~~~~~g~d~~Gfi-~~~~-------S~R~v~~~~a~~l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQ 76 (197)
T PF00697_consen 6 ITRPEDARLAAELGADYLGFI-FYPK-------SPRYVSPDQARELVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVVQ 76 (197)
T ss_dssp --SHHHHHHHHHHTSSEEEEE---TT-------CTTB--HHHHHHHHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEEE
T ss_pred CCcHHHHHHHHHcCCCEEeee-cCCC-------CCCccCHHHHHHHHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEEE
Confidence 456889999999999987333 1122 223344788888887766 334555554 2233 3566779999987
Q ss_pred ecCCCChhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhC-CCEEEEecCC-CCCchHHHHHHHHHhhcceecccccCc
Q 037779 120 ESEVLTPADEENHINKHNFRVPFVCGCRN-LGESLRRIREG-AAMIRTKGEA-GTGNIVEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~G-ad~I~v~g~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (310)
.+-.. +.++.+.++. +..+.-...+.. .+....+.... .|++-+.+.. ++|.
T Consensus 77 LHG~e-~~e~~~~l~~-~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~----------------------- 131 (197)
T PF00697_consen 77 LHGDE-SPEYIKLLRA-GLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGK----------------------- 131 (197)
T ss_dssp E-SGG--HHHHHHHHT-TSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS-----------------------
T ss_pred ECCCC-CHHHHHHhhc-CceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCc-----------------------
Confidence 44332 5566666653 222111112221 11122222222 2676665332 2331
Q ss_pred hhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCC--HHHHHHHHHH
Q 037779 197 DEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGD--PVRRARAIVQ 270 (310)
Q Consensus 197 d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~d--p~~~~~~~~~ 270 (310)
.-+|++++.+.+. .+.|+ +.+||| +|+++.++++ .++.||=|.|.+=.++- -...+++|.+
T Consensus 132 ----------~~dw~~~~~~~~~~~~~p~--iLAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~pG~KD~~ki~~fv~ 196 (197)
T PF00697_consen 132 ----------TFDWSLLKKIVESYSPKPV--ILAGGL-NPENVREAIRQVRPYGVDVSSGVETSPGVKDPEKIKAFVE 196 (197)
T ss_dssp -------------GGGGCCCHHT-GTSTE--EEESS---TTTHHHHHHHC--SEEEESGGGEEETTEE-HHHHHHHHH
T ss_pred ----------ccCHHHhhhhhhhcccCcE--EEEcCC-ChHHHHHHHHhcCceEEEeCCccccCCCCCCHHHHHHHHh
Confidence 1244454444442 25799 458999 5999999998 79999999999987631 1345555554
No 273
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.0059 Score=55.37 Aligned_cols=47 Identities=28% Similarity=0.476 Sum_probs=38.6
Q ss_pred CCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
.+|| ...|+|+ ++++.+++ +.++||++||++-++++|+...++.+..
T Consensus 202 ~v~I--lYGGSV~-~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~ 249 (251)
T COG0149 202 KVRI--LYGGSVK-PGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK 249 (251)
T ss_pred CeEE--EEeCCcC-hhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence 5777 6799995 77777666 5799999999999999998887777654
No 274
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.14 E-value=0.0028 Score=57.10 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=39.5
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
..++++.+.+....|+ -..|||.|.+++.++++.||+-|++||..++.
T Consensus 61 n~~~i~~i~~~~~~~v--~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 61 NEMYIKEISKIGFDWI--QVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred hHHHHHHHHhhCCCCE--EEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 4577777776333488 45999999999999999999999999988773
No 275
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.14 E-value=0.11 Score=48.25 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
.+.+++++.++..|.++. +...+ +.|... -...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus 33 avi~AAee~~sPvIiq~~--~~~~~-~~g~~~--~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~ 107 (284)
T PRK12737 33 VVVETAAELRSPVILAGT--PGTFS-YAGTDY--IVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSH 107 (284)
T ss_pred HHHHHHHHhCCCEEEEcC--ccHHh-hCCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCC
Confidence 347777888888775551 11122 222100 0234556666778999887 33335677888899999998633 22
Q ss_pred CChh-------HHHHHHHhcCCCCc----EE--e-----------ecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779 124 LTPA-------DEENHINKHNFRVP----FV--C-----------GCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA 177 (310)
Q Consensus 124 ~~~~-------~~~~~~~~~~~~l~----v~--~-----------~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~ 177 (310)
++.+ ++.+..++.+..+. .+ . ..++++|+++-. +.|+|.+.+. |..++..
T Consensus 108 lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---- 183 (284)
T PRK12737 108 LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLY---- 183 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcccccc----
Confidence 3333 33344443332111 00 0 034677777655 5788887764 4332211
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+. . ..-++++++.+.+..++|+|.=-++|+ ..++++++.++|+.-|=++|.+..
T Consensus 184 --------------~~-~----------p~Ld~~~L~~I~~~~~iPLVlHGgSG~-~~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 184 --------------KG-E----------PKLDFERLAEIREKVSIPLVLHGASGV-PDEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred --------------CC-C----------CcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHCCCeEEEeCcHHHH
Confidence 10 0 122688999998888899987666777 478899999999999999998765
No 276
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.12 E-value=0.0054 Score=54.49 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=25.9
Q ss_pred CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
++|| -++|||.|.+++.+++++|++-+-..+
T Consensus 175 ~v~I--KaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 175 TIGV--KASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred CCeE--EEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 5788 468999999999999999998765543
No 277
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.11 E-value=0.0014 Score=59.43 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
...++++.+.+...+|+ -+.|||.|.+++..+++.|++-|++||..++.+
T Consensus 61 ~n~~~i~~i~~~~~~~v--~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p 110 (243)
T TIGR01919 61 NNEMMLEEVVKLLVVVE--ELSGGRRDDSSLRAALTGGRARVNGGTAALENP 110 (243)
T ss_pred chHHHHHHHHHHCCCCE--EEcCCCCCHHHHHHHHHcCCCEEEECchhhCCH
Confidence 35678888887777898 459999999999999999999999999877733
No 278
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0038 Score=56.12 Aligned_cols=70 Identities=21% Similarity=0.464 Sum_probs=52.8
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhcc
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGL 288 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (310)
..++++.+.+..++||= ..|||.|.+++..++++|++-|++||.-.+ +|..+.++.+++
T Consensus 63 n~~~i~~i~~~~~~~vQ--vGGGIRs~~~v~~ll~~G~~rViiGt~av~-------------------~p~~v~~~~~~~ 121 (241)
T COG0106 63 NLEAIKEILEATDVPVQ--VGGGIRSLEDVEALLDAGVARVIIGTAAVK-------------------NPDLVKELCEEY 121 (241)
T ss_pred cHHHHHHHHHhCCCCEE--eeCCcCCHHHHHHHHHCCCCEEEEecceec-------------------CHHHHHHHHHHc
Confidence 56788888888888984 499999999999999999999999996655 344444555555
Q ss_pred -CCceecccccc
Q 037779 289 -GEAMVGIDLND 299 (310)
Q Consensus 289 -~~~~~~~~~~~ 299 (310)
++.++++|-++
T Consensus 122 g~rivv~lD~r~ 133 (241)
T COG0106 122 GDRIVVALDARD 133 (241)
T ss_pred CCcEEEEEEccC
Confidence 44555555554
No 279
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.10 E-value=0.12 Score=47.89 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=107.6
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
..+++++.++..|.++. +...++ .|... -...++.+.+..++||.++ |.-.+++.+..+.++|-+.|-.+ +.+
T Consensus 32 vi~AAee~~sPvIlq~s--~~~~~~-~~~~~--~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~l 106 (282)
T TIGR01858 32 VVETAAEMRSPVILAGT--PGTFKH-AGTEY--IVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHF 106 (282)
T ss_pred HHHHHHHhCCCEEEEeC--ccHHhh-CCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCC
Confidence 47777788888875551 111221 11100 1234556666778999987 33345678888999999998733 223
Q ss_pred Chh-------HHHHHHHhcCCCCc----EE-------------eecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779 125 TPA-------DEENHINKHNFRVP----FV-------------CGCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV 178 (310)
Q Consensus 125 ~~~-------~~~~~~~~~~~~l~----v~-------------~~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~ 178 (310)
+.+ ++.+..+..+..+. -+ ...++++|+++-. +.|+|.+.+. |..++..
T Consensus 107 p~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y----- 181 (282)
T TIGR01858 107 PFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLY----- 181 (282)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCc-----
Confidence 333 33333333332110 00 0034667777655 5788887664 3332210
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+. . ..-++++++.+.+..++|+|.=-++|+ +.++++++.++|..-|=++|.+..
T Consensus 182 -------------k~-~----------p~Ldf~~L~~I~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~l~~ 235 (282)
T TIGR01858 182 -------------KK-T----------PKLDFDRLAEIREVVDVPLVLHGASDV-PDEDVRRTIELGICKVNVATELKI 235 (282)
T ss_pred -------------CC-C----------CccCHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCeEEEeCcHHHH
Confidence 10 0 122688999998888899987667777 478899999999999999998876
No 280
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.10 E-value=0.0032 Score=57.09 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=41.0
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
..++++.+.+.. .|+ -+.|||.|.+++.++++.|++-|++||..++.+
T Consensus 62 n~~~i~~i~~~~-~~v--~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p 109 (241)
T PRK14114 62 NLPVLEKLSEFA-EHI--QIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP 109 (241)
T ss_pred hHHHHHHHHhhc-CcE--EEecCCCCHHHHHHHHHCCCCEEEECchhhCCH
Confidence 567788887755 688 459999999999999999999999999888744
No 281
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.10 E-value=0.099 Score=48.60 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=108.2
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
..+++++.++..|.+.. +...++. |... -...++.+.+..++||.++ |.-.+++.+..+.++|-+.|-.+ +.+
T Consensus 34 vi~AAee~~sPvIlq~s--~~~~~~~-~~~~--~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~l 108 (286)
T PRK12738 34 ILEVCSEMRSPVILAGT--PGTFKHI-ALEE--IYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHF 108 (286)
T ss_pred HHHHHHHHCCCEEEEcC--cchhhhC-CHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCC
Confidence 47777788888875541 1111111 1100 1234556667778999987 33335677888889999998733 223
Q ss_pred Chh-------HHHHHHHhcCCCCc----EE---------ee----cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779 125 TPA-------DEENHINKHNFRVP----FV---------CG----CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV 178 (310)
Q Consensus 125 ~~~-------~~~~~~~~~~~~l~----v~---------~~----v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~ 178 (310)
+.+ ++++..+..+..+. -+ .+ .++++|+.+-. +.|+|.+.+. |..++..
T Consensus 109 p~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y----- 183 (286)
T PRK12738 109 PFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLY----- 183 (286)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCC-----
Confidence 333 33333433332110 00 00 34677777665 4688888764 4333211
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+. . ..-++++++.+.+..++|+|.=-++|+. .++++++.++|..-|=++|.+..
T Consensus 184 -------------~~-~----------p~Ldfd~l~~I~~~~~vPLVLHGgSG~~-~e~~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 184 -------------SK-T----------PKIDFQRLAEIREVVDVPLVLHGASDVP-DEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_pred -------------CC-C----------CcCCHHHHHHHHHHhCCCEEEeCCCCCC-HHHHHHHHHcCCeEEEeCcHHHH
Confidence 10 0 1226889999988889999876777884 78999999999999999998876
No 282
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.10 E-value=0.0085 Score=55.26 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=95.7
Q ss_pred ceeeeecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHH
Q 037779 5 GVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLI 84 (310)
Q Consensus 5 ~~~~~~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i 84 (310)
|+.-..++..|.++|++. ..|+..+-|.|+ ...|+.+++.|++.| +- |+.. .+..+.+
T Consensus 56 g~~Rm~~p~~I~aIk~~V----~iPVigk~Righ------~~Ea~~L~~~GvDiI-D~----Te~l-------rpad~~~ 113 (293)
T PRK04180 56 GVARMADPKMIEEIMDAV----SIPVMAKARIGH------FVEAQILEALGVDYI-DE----SEVL-------TPADEEY 113 (293)
T ss_pred CeeecCCHHHHHHHHHhC----CCCeEEeehhhH------HHHHHHHHHcCCCEE-ec----cCCC-------CchHHHH
Confidence 455555566677777764 468888888766 788999999999998 42 2211 1124567
Q ss_pred HHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------------------------C-------------CCCh
Q 037779 85 KQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------------------------E-------------VLTP 126 (310)
Q Consensus 85 ~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------------------------~-------------~~~~ 126 (310)
+.++..+++|+++... +..++....+.|+|.|-.+ . ...+
T Consensus 114 ~~~K~~f~~~fmad~~--~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~ 191 (293)
T PRK04180 114 HIDKWDFTVPFVCGAR--NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAP 191 (293)
T ss_pred HHHHHHcCCCEEccCC--CHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCC
Confidence 7888888999988744 4467888888999998633 0 1123
Q ss_pred hHHHHHHHhcCCCCcEE--e--ecCCHHHHHHHHHhCCCEEEEecC
Q 037779 127 ADEENHINKHNFRVPFV--C--GCRNLGESLRRIREGAAMIRTKGE 168 (310)
Q Consensus 127 ~~~~~~~~~~~~~l~v~--~--~v~t~~ea~~a~~~Gad~I~v~g~ 168 (310)
.++++.+.+. ..++++ + +++|++++..+.+.|++.+.+.+.
T Consensus 192 ~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSa 236 (293)
T PRK04180 192 YELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSG 236 (293)
T ss_pred HHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHH
Confidence 3444555442 346765 3 489999999999999999988633
No 283
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.08 E-value=0.12 Score=48.09 Aligned_cols=176 Identities=15% Similarity=0.156 Sum_probs=108.6
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
..+++++.++..|.++. +...+ +.|... -...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-.+ +.+
T Consensus 34 vi~AAee~~sPvIiq~~--~~~~~-~~g~~~--~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 34 VVETAAELHSPVIIAGT--PGTFS-YAGTEY--LLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred HHHHHHHhCCCEEEEcC--hhHHh-hCCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCC
Confidence 47777778888775551 11121 122100 1334566677789999886 33335677888889999998733 223
Q ss_pred Chh-------HHHHHHHhcCCCCc----EE-------------eecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779 125 TPA-------DEENHINKHNFRVP----FV-------------CGCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV 178 (310)
Q Consensus 125 ~~~-------~~~~~~~~~~~~l~----v~-------------~~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~ 178 (310)
+.+ ++.+..+..+..+. .+ ...++++|+++-. +.|+|.+.+. |..++.
T Consensus 109 ~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~------ 182 (284)
T PRK09195 109 PFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM------ 182 (284)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc------
Confidence 333 33333333331111 00 0024677877665 4688888764 433221
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++. . ..-++++++.+.+..++|+|.=-++|+. .++++++.+.|..-|=++|.+..
T Consensus 183 ------------y~~-~----------p~Ld~~~L~~I~~~~~vPLVLHGgSG~~-~e~~~~ai~~Gi~KiNi~T~l~~ 237 (284)
T PRK09195 183 ------------YKG-E----------PKLDFDRLENIRQWVNIPLVLHGASGLP-TKDIQQTIKLGICKVNVATELKI 237 (284)
T ss_pred ------------cCC-C----------CcCCHHHHHHHHHHhCCCeEEecCCCCC-HHHHHHHHHcCCeEEEeCcHHHH
Confidence 111 0 1226889999988888999876677884 78999999999999999998875
No 284
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.06 E-value=0.0041 Score=55.60 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=42.5
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+.++++.+.+..++|+ .+.|||.+.+++.+++++||+.|++|+..++.
T Consensus 60 ~~~~i~~i~~~~~~pi--~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 60 NLPVIKKIVRETGVPV--QVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred cHHHHHHHHHhcCCCE--EEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 5678888877777899 45999999999999999999999999999974
No 285
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.06 E-value=0.0026 Score=60.92 Aligned_cols=120 Identities=24% Similarity=0.391 Sum_probs=62.5
Q ss_pred cCCCeee---ecCCCChhHHHHHHH---hcCCCCcEEee---cCCHHHHHH-HHHhCCCEEEEecCC-CCCchHHHHHHH
Q 037779 113 IGVDYVD---ESEVLTPADEENHIN---KHNFRVPFVCG---CRNLGESLR-RIREGAAMIRTKGEA-GTGNIVEAVRHV 181 (310)
Q Consensus 113 aGad~v~---~~~~~~~~~~~~~~~---~~~~~l~v~~~---v~t~~ea~~-a~~~Gad~I~v~g~~-~~~~~~~~~~~~ 181 (310)
.|.+.+. .++..+++++.+++. ...++.++.+. .+..+++.. +.+.|+|+|.+.|.. +|+--
T Consensus 171 ~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAa------- 243 (368)
T PF01645_consen 171 PGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAA------- 243 (368)
T ss_dssp TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSE-------
T ss_pred CCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCC-------
Confidence 6777775 345667776665554 44456666554 234444444 678999999998663 44310
Q ss_pred HHhhcceecccccCchhHHhhhccCCCcHH-----HHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYD-----LVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~-----l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
+....| .++.|++ ..+.+.+. .++.+ +++||+.|+.|+.+++.+|||+|.+|+
T Consensus 244 ----------p~~~~d-------~~GlP~~~~l~~a~~~L~~~glr~~V~L--i~sGgl~t~~dv~kalaLGAD~v~igt 304 (368)
T PF01645_consen 244 ----------PLTSMD-------HVGLPTEYALARAHQALVKNGLRDRVSL--IASGGLRTGDDVAKALALGADAVYIGT 304 (368)
T ss_dssp ----------ECCHHH-------HC---HHHHHHHHHHHHHCTT-CCCSEE--EEESS--SHHHHHHHHHCT-SEEE-SH
T ss_pred ----------chhHHh-------hCCCcHHHHHHHHHHHHHHcCCCCceEE--EEeCCccCHHHHHHHHhcCCCeeEecc
Confidence 000000 1122221 12222222 13555 789999999999999999999999999
Q ss_pred ccccC
Q 037779 254 GVFKS 258 (310)
Q Consensus 254 ai~~~ 258 (310)
+++-+
T Consensus 305 ~~liA 309 (368)
T PF01645_consen 305 AALIA 309 (368)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 88764
No 286
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=97.02 E-value=0.025 Score=50.36 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=82.9
Q ss_pred hHHHHHHHhhcCcceEeeccccc----h-HHHHHHHHcCCCeeeecCCCChhHHHHHHHh---cCCCCcEEeecCCHHHH
Q 037779 81 PQLIKQIKSSVTIPVMAKARIGH----F-VEAQILEAIGVDYVDESEVLTPADEENHINK---HNFRVPFVCGCRNLGES 152 (310)
Q Consensus 81 ~~~i~~i~~~~~lPv~~kd~i~~----~-~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~---~~~~l~v~~~v~t~~ea 152 (310)
.+.++.+++.. .|++......+ . ..++.+.+.|+|++..+......-+...+.. ++.++.+++...++...
T Consensus 39 ~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~~~~~~~~~~v~~lss~~~~ 117 (216)
T cd04725 39 PEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGAL 117 (216)
T ss_pred HHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHhccCCeEEEEEcCCCCCHH
Confidence 66788888755 77777544431 1 2234566789999986655444434333332 23445555555554321
Q ss_pred HHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC
Q 037779 153 LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV 232 (310)
Q Consensus 153 ~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI 232 (310)
...+ +.+. . .........+.+++.+.+-.+.+ ....+.++.... .+.++ ...||
T Consensus 118 -~~q~-~~~~---~---~~~~~~~~~~~a~~~g~~G~V~~--------------~~~~~~i~~~~~-~~~~~---ltPGI 171 (216)
T cd04725 118 -DLQE-GIPG---S---LEDLVERLAKLAREAGVDGVVCG--------------ATEPEALRRALG-PDFLI---LTPGI 171 (216)
T ss_pred -HHHh-hhcC---C---HHHHHHHHHHHHHHHCCCEEEEC--------------CcchHHHHHhhC-CCCeE---EcCCc
Confidence 1111 1100 0 00011122222222221100000 111222222211 24454 36999
Q ss_pred CCHH----------HHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779 233 ATPA----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 233 ~t~~----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~ 267 (310)
+ ++ +..++++.|++.+++|+.|++++||.+.+++
T Consensus 172 ~-~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 172 G-AQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred C-CCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 6 56 7889999999999999999999999988765
No 287
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.01 E-value=0.011 Score=56.93 Aligned_cols=161 Identities=20% Similarity=0.229 Sum_probs=84.8
Q ss_pred CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh-HHHHHHHhhcCcceEeeccccchHHHHHHHHcCC
Q 037779 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDP-QLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGV 115 (310)
Q Consensus 37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~-~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGa 115 (310)
..|..+.++.++..+.+.|+..+...+ .. +.. ..++ ..+.+|...-.-|-+ .+-++.+.+.++
T Consensus 50 APMagVtd~~fr~~~~~~Galgvvsae----gl-~~~----~~~~~~~~~QI~g~~~~~~~-------a~aa~~~~e~~~ 113 (369)
T TIGR01304 50 HPMDALVSPEFAIELGELGGLGVLNLE----GL-WGR----HEDPDPAIAKIAEAYEEGDQ-------AAATRLLQELHA 113 (369)
T ss_pred cCCCcccCHHHHHHHHHcCCcccccch----HH-Hhc----CCCHHHHHHHHhhcCCChHH-------HHHHHHHHHcCC
Confidence 445567888999999999996652221 00 000 0111 122222221000000 023344455555
Q ss_pred CeeeecCCCChhHH---HHHHHhcCCCCcEEeecC--CH-HHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779 116 DYVDESEVLTPADE---ENHINKHNFRVPFVCGCR--NL-GESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR 189 (310)
Q Consensus 116 d~v~~~~~~~~~~~---~~~~~~~~~~l~v~~~v~--t~-~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~ 189 (310)
+.+ .+..+ ++.+++. ++.+-+... +. +-++.+.++|+|++.++|..-+
T Consensus 114 ~~~------~p~l~~~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~------------------ 167 (369)
T TIGR01304 114 APL------KPELLGERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVS------------------ 167 (369)
T ss_pred Ccc------ChHHHHHHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchh------------------
Confidence 543 33333 3333332 233333322 33 3445667899999999865210
Q ss_pred cccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
..+.. . ..++..+..+.+..++||+ + |+|.|.+++.+++++|||+|++|+
T Consensus 168 -q~~~s---------g-~~~p~~l~~~i~~~~IPVI--~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 168 -AEHVS---------T-SGEPLNLKEFIGELDVPVI--A-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred -hhccC---------C-CCCHHHHHHHHHHCCCCEE--E-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 00000 0 1123334444444578994 3 899999999999999999999885
No 288
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.99 E-value=0.021 Score=54.42 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=63.6
Q ss_pred CChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--------CCChhHHHHHHHh----cCCCCcEEe--
Q 037779 79 SDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE--------VLTPADEENHINK----HNFRVPFVC-- 144 (310)
Q Consensus 79 ~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~--------~~~~~~~~~~~~~----~~~~l~v~~-- 144 (310)
...+.++.+++.+++||++|.. ++.+.++.+.++|+|.|..+. ..++.+....+.. .+..+++++
T Consensus 200 ~~~~~i~~l~~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~G 278 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDG 278 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4578899999999999999954 566788999999999987321 1223233333322 122366666
Q ss_pred ecCCHHHHHHHHHhCCCEEEEe
Q 037779 145 GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 145 ~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
++.+..++.+++.+||+.+.+.
T Consensus 279 GIr~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 279 GVRRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCCHHHHHHHHHcCCCEEEEC
Confidence 4999999999999999999985
No 289
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.98 E-value=0.2 Score=46.57 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=106.6
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
...+++++.+...|.++. +...+ +.|... -...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus 33 avi~AAee~~sPvIlq~~--~~~~~-~~g~~~--~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~ 107 (284)
T PRK12857 33 AIVAAAEAEKSPVIIQAS--QGAIK-YAGIEY--ISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSK 107 (284)
T ss_pred HHHHHHHHhCCCEEEEec--hhHhh-hCCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCC
Confidence 346777788888775551 11121 222100 0223555666778999887 33335677788888999998632 22
Q ss_pred CChh-------HHHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchH
Q 037779 124 LTPA-------DEENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIV 175 (310)
Q Consensus 124 ~~~~-------~~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~ 175 (310)
++.+ ++.+..+..+ +.+=.+ .++++++++-. +.|+|.+.+. |..++.
T Consensus 108 lp~eeNi~~T~~vv~~Ah~~g--vsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~--- 182 (284)
T PRK12857 108 LPLEENIALTKKVVEIAHAVG--VSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGP--- 182 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHcC--CEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccc---
Confidence 3433 2333333322 211111 24667777655 4688877664 332221
Q ss_pred HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai 255 (310)
++. . ..-++++++.+.+..++|+|.=-++|+ +.++++++.++|..-|=++|.+
T Consensus 183 ---------------y~~-~----------p~Ld~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~~ 235 (284)
T PRK12857 183 ---------------YKG-E----------PKLDFDRLAKIKELVNIPIVLHGSSGV-PDEAIRKAISLGVRKVNIDTNI 235 (284)
T ss_pred ---------------cCC-C----------CcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEeCcHH
Confidence 010 0 122688999998877899987667787 4789999999999999999988
Q ss_pred cc
Q 037779 256 FK 257 (310)
Q Consensus 256 ~~ 257 (310)
..
T Consensus 236 ~~ 237 (284)
T PRK12857 236 RE 237 (284)
T ss_pred HH
Confidence 76
No 290
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.96 E-value=0.17 Score=47.05 Aligned_cols=177 Identities=11% Similarity=0.141 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEee-ccccchHHHHHHHHcCCCeeeec-
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAK-ARIGHFVEAQILEAIGVDYVDES- 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~- 121 (310)
.+.+++++.++..|.++. +...+++.|.. .-...++...+.. .+||.++ |.-.+++.+..+.++|-+.|-++
T Consensus 33 avi~AAee~~sPvIlq~~--~~~~~~~~g~~--~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDg 108 (288)
T TIGR00167 33 AVLEAAAEEKSPVIIQFS--NGAAKYIAGLG--AISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDG 108 (288)
T ss_pred HHHHHHHHHCCCEEEECC--cchhhccCCHH--HHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecC
Confidence 347777888888875551 11111112210 0022344455556 8899886 33335677888888999998733
Q ss_pred CCCChhH-------HHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCc
Q 037779 122 EVLTPAD-------EENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGN 173 (310)
Q Consensus 122 ~~~~~~~-------~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~ 173 (310)
+.++.++ +.+..+. .|+.+=.+ .++++|+++-. +.|+|.+.+. |..++..
T Consensus 109 S~lp~eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y 186 (288)
T TIGR00167 109 SHEPFEENIELTKKVVERAHK--MGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVY 186 (288)
T ss_pred CCCCHHHHHHHHHHHHHHHHH--cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcccccc
Confidence 2233332 2233332 23222111 23567777655 4688887664 4332210
Q ss_pred hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
+. .+ ..-++++++.+.+..++|+|.=-++|+ +.++++++.+.|+.-|=++|
T Consensus 187 ------------------~~-~p---------~~Ld~~~L~~I~~~v~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T 237 (288)
T TIGR00167 187 ------------------KG-EP---------KGLDFERLEEIQKYVNLPLVLHGGSGI-PDEEIKKAISLGVVKVNIDT 237 (288)
T ss_pred ------------------CC-CC---------CccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEcCh
Confidence 10 00 013688999998888999976656666 35899999999999999999
Q ss_pred cccc
Q 037779 254 GVFK 257 (310)
Q Consensus 254 ai~~ 257 (310)
.+..
T Consensus 238 ~l~~ 241 (288)
T TIGR00167 238 ELQI 241 (288)
T ss_pred HHHH
Confidence 8865
No 291
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.94 E-value=0.023 Score=54.59 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA 265 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~ 265 (310)
..+.+.+++..++|| ++.|++ +++.+.++++.| +|.|.+|++++..+|....+
T Consensus 281 ~~~~~~ik~~~~~pv--~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 281 DAFREKVRARFHGVI--IGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARL 334 (362)
T ss_pred HHHHHHHHHHCCCCE--EEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHH
Confidence 455677777777898 556887 899999999987 99999999999987765444
No 292
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.024 Score=50.03 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=83.5
Q ss_pred HHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCE
Q 037779 86 QIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAM 162 (310)
Q Consensus 86 ~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~ 162 (310)
..++.-=+||++.+.... ...++.+.+.|.+.|-++ ....+.+.++.+.+..++..+.++ +-|++++..+.++|+++
T Consensus 9 ~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~f 88 (211)
T COG0800 9 KLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQF 88 (211)
T ss_pred HHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCE
Confidence 333333478877766643 235678888999998754 223466788888776667778775 78899999999999999
Q ss_pred EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779 163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~ 242 (310)
+.. + + .+.++++.... .++|+ + =|+.|+..+..++
T Consensus 89 iVs--P----~----------------------------------~~~ev~~~a~~-~~ip~--~--PG~~TptEi~~Al 123 (211)
T COG0800 89 IVS--P----G----------------------------------LNPEVAKAANR-YGIPY--I--PGVATPTEIMAAL 123 (211)
T ss_pred EEC--C----C----------------------------------CCHHHHHHHHh-CCCcc--c--CCCCCHHHHHHHH
Confidence 764 1 1 02334444443 46788 4 7888999999999
Q ss_pred HcCCCEE
Q 037779 243 QLGCDGV 249 (310)
Q Consensus 243 ~~GadgV 249 (310)
++|++.+
T Consensus 124 e~G~~~l 130 (211)
T COG0800 124 ELGASAL 130 (211)
T ss_pred HcChhhe
Confidence 9998876
No 293
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.93 E-value=0.016 Score=55.53 Aligned_cols=120 Identities=20% Similarity=0.169 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCC-CChHHHHHHHhhcCcceEeeccc--cchHHHHHHHHcCCCeeeec
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARM-SDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEAIGVDYVDES 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~-~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~aGad~v~~~ 121 (310)
+..+.....+++++ .++ +.+.+.....|.... .-.+.++.+++.+++||++|... ...+.++.+.++|+|+|..+
T Consensus 139 ~~~~~~~~~~adal-~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 139 EAQRAVEMIEADAL-QIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHHhcCCCcE-EEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 34555666678877 343 111111111111000 01367888999899999998542 23467888999999998732
Q ss_pred C-C-------------------------CChhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779 122 E-V-------------------------LTPADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 122 ~-~-------------------------~~~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
. . .+....+..+.+...++++++ ++++..++.+++.+|||.+.+.
T Consensus 218 g~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig 290 (352)
T PRK05437 218 GAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMA 290 (352)
T ss_pred CCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEh
Confidence 1 1 011112222333213566666 4899999999999999999985
No 294
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.93 E-value=0.22 Score=46.31 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=105.2
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee-ccccchHHHHHHHHcCCCeeeec-C
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK-ARIGHFVEAQILEAIGVDYVDES-E 122 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~ 122 (310)
..+++++.++..|.++. +...++..|... -...++.+.+... +||.++ |.-.+++.+..+.++|-+.|-++ +
T Consensus 34 vi~AAe~~~sPvIiq~~--~~~~~~~~~~~~--~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS 109 (285)
T PRK07709 34 ILAAAEEEKSPVILGVS--EGAARHMTGFKT--VVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS 109 (285)
T ss_pred HHHHHHHHCCCEEEEcC--cchhhhcCCHHH--HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCC
Confidence 46777777888876651 111111012100 0234555555554 799886 33335677888899999998632 2
Q ss_pred CCChh-------HHHHHHHhcCCCCc----EE--e------e---cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779 123 VLTPA-------DEENHINKHNFRVP----FV--C------G---CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV 178 (310)
Q Consensus 123 ~~~~~-------~~~~~~~~~~~~l~----v~--~------~---v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~ 178 (310)
.++.+ ++++..++.+..+. .+ . + .++++|++.-. +.|+|.+.+. |..++-
T Consensus 110 ~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~------ 183 (285)
T PRK07709 110 HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGP------ 183 (285)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccC------
Confidence 23333 33333333332111 00 0 0 35777877665 4688887664 433221
Q ss_pred HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++. . ..-++++++.+.+..++|+|.=-++|+ ..++++++.++|+.-|=++|.+..
T Consensus 184 ------------Y~~-~----------p~L~~~~L~~I~~~~~iPLVLHGgSG~-~~e~~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 184 ------------YKG-E----------PNLGFAEMEQVRDFTGVPLVLHGGTGI-PTADIEKAISLGTSKINVNTENQI 238 (285)
T ss_pred ------------cCC-C----------CccCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEeChHHHH
Confidence 010 0 122678889998877899976656666 368999999999999999998765
No 295
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.91 E-value=0.053 Score=47.69 Aligned_cols=28 Identities=43% Similarity=0.643 Sum_probs=24.0
Q ss_pred CCCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV 249 (310)
.++|| -++|||.|.+++.+++++|++-+
T Consensus 173 ~~v~i--k~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 173 GRVGV--KAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCceE--EEeCCCCCHHHHHHHHHhChhhc
Confidence 45788 46899999999999999998865
No 296
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.90 E-value=0.014 Score=57.77 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=80.9
Q ss_pred eecCCccccC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccchHHHHHH
Q 037779 33 MLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 33 ~l~~g~i~~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~~~~~~~ 110 (310)
++-+|.+.-. .+.+.++.+.++|++.|. + |... |.. ..-.+.++.+++. .++||++++.. +.+.++.+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~-v-----d~a~--g~~-~~~~~~i~~i~~~~~~~~vi~G~v~-t~~~a~~l 282 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIV-I-----DSSH--GHS-IYVIDSIKEIKKTYPDLDIIAGNVA-TAEQAKAL 282 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEE-E-----ECCC--CcH-hHHHHHHHHHHHhCCCCCEEEEeCC-CHHHHHHH
Confidence 3334444332 335789999999999883 3 1211 110 1226778899888 48999885544 45788899
Q ss_pred HHcCCCeeeec--C------------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779 111 EAIGVDYVDES--E------------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~v~~~--~------------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
.++|||+|... . ..+....+..+.+ +..++++++ ++++..++.+|+.+||+.+.+.
T Consensus 283 ~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 283 IDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 99999998411 0 0011122222222 235689999 7999999999999999999885
No 297
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=96.89 E-value=0.17 Score=45.26 Aligned_cols=189 Identities=13% Similarity=0.139 Sum_probs=109.3
Q ss_pred cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeeccccc----hHHHHHHH-H
Q 037779 41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIGH----FVEAQILE-A 112 (310)
Q Consensus 41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~~----~~~~~~~~-~ 112 (310)
+..+.+..+.+.+.| .+++. = .|+=.+ +.|. ....+.++++++..+ .||.+...-.+ .+++..+. .
T Consensus 6 DtAd~~~i~~~~~~~~i~GvT-T--NPsll~-k~g~--~~~~~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~ 79 (222)
T PRK12656 6 DTLNLEAIKKWHEILPLAGVT-S--NPSIAK-KEGD--IDFFERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIRRQ 79 (222)
T ss_pred ecCCHHHHHHHHhcCCcceEe-C--CHHHHH-hcCC--CCHHHHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHH
Confidence 445677777777765 46652 1 223222 2221 122567788888763 57776544332 23455554 3
Q ss_pred cCCCeee-ecCCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhccee
Q 037779 113 IGVDYVD-ESEVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIR 189 (310)
Q Consensus 113 aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~ 189 (310)
.|-+.++ ++....--...+.+++.+ +.+.+. +.|++++..+.+.||+||.+. |+..
T Consensus 80 ~~~nv~VKIP~T~~Gl~Ai~~L~~~G--i~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~------------------- 138 (222)
T PRK12656 80 CGDDVYIKVPVTPAGLAAIKTLKAEG--YHITATAIYTVFQGLLAIEAGADYLAPYYNRME------------------- 138 (222)
T ss_pred hCCCEEEEeCCCHHHHHHHHHHHHCC--CceEEeeeCCHHHHHHHHHCCCCEEecccchhh-------------------
Confidence 6644554 554322334555565544 444433 789999999999999999875 4311
Q ss_pred cccccCchhHHhhhccCCCcHHHHHH----HHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC----CC
Q 037779 190 VLRNMDDDEVFTFAKNIAAPYDLVMQ----TKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----GD 260 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~l~~~----i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~----~d 260 (310)
....| +.+++.. +... .+.-|+ ..-+.++.++.++.++|||.+-+.-.+++. +.
T Consensus 139 ---d~g~D-----------~~~~i~~i~~~~~~~~~~tkIL---aAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~ 201 (222)
T PRK12656 139 ---NLNID-----------SNAVIGQLAEAIDRENSDSKIL---AASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPS 201 (222)
T ss_pred ---hcCCC-----------HHHHHHHHHHHHHhcCCCCEEE---EEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCc
Confidence 01111 1222322 2222 233342 467889999999999999999999877663 33
Q ss_pred HHHHHHHHHHHHH
Q 037779 261 PVRRARAIVQAVT 273 (310)
Q Consensus 261 p~~~~~~~~~~~~ 273 (310)
....+++|.+-++
T Consensus 202 t~~~~~~F~~dw~ 214 (222)
T PRK12656 202 IQKAVDDFADDWE 214 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666554
No 298
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.88 E-value=0.3 Score=45.46 Aligned_cols=178 Identities=12% Similarity=0.135 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee-ccccchHHHHHHHHcCCCeeeec-
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK-ARIGHFVEAQILEAIGVDYVDES- 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k-d~i~~~~~~~~~~~aGad~v~~~- 121 (310)
...+++++.++..|.++. +...++.+|... -...++.+.+... +||.++ |.-.+++.+..+.++|-+.|-++
T Consensus 33 avi~AAee~~sPvIl~~~--~~~~~~~~~~~~--~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~Dg 108 (286)
T PRK08610 33 AILEASQEENAPVILGVS--EGAARYMSGFYT--VVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDA 108 (286)
T ss_pred HHHHHHHHHCCCEEEEcC--ccHHhhcCcHHH--HHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeC
Confidence 347777888888876552 111222121100 1234455555555 899886 33335677888899999998633
Q ss_pred CCCChh-------HHHHHHHhcCCCCc----EE--e------e---cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779 122 EVLTPA-------DEENHINKHNFRVP----FV--C------G---CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA 177 (310)
Q Consensus 122 ~~~~~~-------~~~~~~~~~~~~l~----v~--~------~---v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~ 177 (310)
+.++.+ ++++..+..+..+. .+ . + .++++|++.-. +.|+|.+.+. |..++-
T Consensus 109 S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~----- 183 (286)
T PRK08610 109 SHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGP----- 183 (286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccc-----
Confidence 223333 33333333222111 00 0 0 25677777665 4688887664 433221
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++. . ..-++++++.+.+..++|+|.=-++|+ ..++++++.++|+.-|=++|.+-.
T Consensus 184 -------------Y~~-~----------p~Ld~~~L~~I~~~~~vPLVLHGgSG~-~~e~~~~ai~~GI~KiNi~T~l~~ 238 (286)
T PRK08610 184 -------------YKG-E----------PKLGFKEMEEIGLSTGLPLVLHGGTGI-PTKDIQKAIPFGTAKINVNTENQI 238 (286)
T ss_pred -------------cCC-C----------CCCCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHCCCeEEEeccHHHH
Confidence 010 0 122688888888877899976555666 358899999999999999998865
No 299
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=96.87 E-value=0.0017 Score=62.09 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=69.5
Q ss_pred HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC-C
Q 037779 129 EENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI-A 207 (310)
Q Consensus 129 ~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~-~ 207 (310)
....+++.-.+..+..++.++.|+..+...|++.|-+..... . .+ ++ .
T Consensus 209 d~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhgg--r----------------ql-------------D~g~ 257 (360)
T COG1304 209 DGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGG--R----------------QL-------------DWGI 257 (360)
T ss_pred HHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCC--c----------------cc-------------cCCC
Confidence 334444433334555578899999999999999887753321 1 00 11 2
Q ss_pred CcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 208 APYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 208 ~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
++.+.+..+.+.. ++|| +++|||.+..|+.+++.+||++|.+|+.+..+
T Consensus 258 st~~~L~ei~~av~~~~~v--i~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~ 308 (360)
T COG1304 258 STADSLPEIVEAVGDRIEV--IADGGIRSGLDVAKALALGADAVGIGRPFLYG 308 (360)
T ss_pred ChHHHHHHHHHHhCCCeEE--EecCCCCCHHHHHHHHHhCCchhhhhHHHHHH
Confidence 3566677776653 3788 67999999999999999999999999988874
No 300
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.87 E-value=0.00086 Score=60.29 Aligned_cols=50 Identities=20% Similarity=0.476 Sum_probs=40.8
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d 260 (310)
..++++.+.+...+|+ .+.|||.+.+++.++++.||+-|++||..++.++
T Consensus 61 n~~~i~~i~~~~~~~i--~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~ 110 (229)
T PF00977_consen 61 NLELIKEIAKETGIPI--QVGGGIRSIEDAERLLDAGADRVVIGTEALEDPE 110 (229)
T ss_dssp HHHHHHHHHHHSSSEE--EEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCH
T ss_pred HHHHHHHHHhcCCccE--EEeCccCcHHHHHHHHHhCCCEEEeChHHhhchh
Confidence 4677788887777899 4699999999999999999999999998887543
No 301
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.86 E-value=0.043 Score=50.95 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccch----HHHHH
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGHF----VEAQI 109 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~~----~~~~~ 109 (310)
+.|+--|+.++.+|++++- +-. -...+..|- ..+.- .+.++.|.+.+++||++- ...+.. ..++.
T Consensus 20 ~~Da~SAri~e~aGf~Ai~-~sg--~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~ 96 (285)
T TIGR02317 20 AINAMAALLAERAGFEAIY-LSG--AAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVRE 96 (285)
T ss_pred CCCHHHHHHHHHcCCCEEE-EcH--HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHH
Confidence 4566779999999999972 210 000000011 01111 334566777889999985 233322 34678
Q ss_pred HHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecCC-----HHHH----HHHHHhCCC
Q 037779 110 LEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCRN-----LGES----LRRIREGAA 161 (310)
Q Consensus 110 ~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~t-----~~ea----~~a~~~Gad 161 (310)
+.++|+.++++-+. .+.++....++. .+.++.+.+-+.. .+|+ +...++|||
T Consensus 97 ~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD 176 (285)
T TIGR02317 97 MEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGAD 176 (285)
T ss_pred HHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCC
Confidence 88899999984332 233444444433 1122333332222 3333 223356777
Q ss_pred EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCH-HHHH
Q 037779 162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP-ADAA 239 (310)
Q Consensus 162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~-~di~ 239 (310)
.|.+.+. . +.+.++.+.+..+.|+++ +.++|- +| -++.
T Consensus 177 ~vfi~g~--------------------------------------~-~~e~i~~~~~~i~~Pl~~n~~~~~~-~p~~s~~ 216 (285)
T TIGR02317 177 MIFPEAL--------------------------------------T-SLEEFRQFAKAVKVPLLANMTEFGK-TPLFTAD 216 (285)
T ss_pred EEEeCCC--------------------------------------C-CHHHHHHHHHhcCCCEEEEeccCCC-CCCCCHH
Confidence 7766532 0 223334444444567731 234553 34 3688
Q ss_pred HHHHcCCCEEEEccccccC
Q 037779 240 MMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 240 ~~~~~GadgV~VGsai~~~ 258 (310)
++.++|++-|..|...+.+
T Consensus 217 eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 217 ELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHHHcCCcEEEEchHHHHH
Confidence 8999999999999988874
No 302
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.85 E-value=0.28 Score=45.38 Aligned_cols=187 Identities=12% Similarity=0.143 Sum_probs=111.3
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
.+.+++++.++..|.++. +...+ +.|. ..-...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus 28 avi~AAe~~~sPvIi~~~--~~~~~-~~~~--~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~ 102 (276)
T cd00947 28 AILEAAEETRSPVILQIS--EGAIK-YAGL--ELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSH 102 (276)
T ss_pred HHHHHHHHhCCCEEEEcC--cchhh-hCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCC
Confidence 347777788888875552 11111 2221 001234556666678999887 33334577788888999998743 23
Q ss_pred CChh-------HHHHHHHhcCCCCcEEee-----------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779 124 LTPA-------DEENHINKHNFRVPFVCG-----------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA 177 (310)
Q Consensus 124 ~~~~-------~~~~~~~~~~~~l~v~~~-----------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~ 177 (310)
++.+ ++.+..+..+ +.+=.+ .+++++++.-. +.|+|.+.+. |..++..
T Consensus 103 l~~eeNi~~t~~vv~~ah~~g--v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y---- 176 (276)
T cd00947 103 LPFEENVAKTKEVVELAHAYG--VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAY---- 176 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcccccc----
Confidence 3433 2333333332 221111 24577777665 4688888764 4332210
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
+. . ...-++++++.+.+..++|++.=-.+|+ ..++++++.+.|..-|=++|.+..
T Consensus 177 --------------~~--~--------~p~L~~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 177 --------------KG--G--------EPKLDFDRLKEIAERVNVPLVLHGGSGI-PDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred --------------CC--C--------CCccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEeChHHHH
Confidence 00 0 0123688999998888899976656666 368899999999999999998865
Q ss_pred CCCHHHHHHHHHHHHH
Q 037779 258 SGDPVRRARAIVQAVT 273 (310)
Q Consensus 258 ~~dp~~~~~~~~~~~~ 273 (310)
...+.+.+.+.
T Consensus 232 -----a~~~~~~~~~~ 242 (276)
T cd00947 232 -----AFTAALREYLA 242 (276)
T ss_pred -----HHHHHHHHHHH
Confidence 23444444443
No 303
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.85 E-value=0.026 Score=53.21 Aligned_cols=124 Identities=17% Similarity=0.104 Sum_probs=79.6
Q ss_pred cCcceEeeccc--cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhc-CCCCcEEeecCC-HHHHH---HHHHhC--CC
Q 037779 91 VTIPVMAKARI--GHFVEAQILEAIGVDYVDESEVLTPADEENHINKH-NFRVPFVCGCRN-LGESL---RRIREG--AA 161 (310)
Q Consensus 91 ~~lPv~~kd~i--~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~-~~~l~v~~~v~t-~~ea~---~a~~~G--ad 161 (310)
.++|++++.+- .+.+.+..+.+.|.-.++. . +++++..+++++. ..++.+.+++.+ .++.+ ...+.| +|
T Consensus 33 l~~P~~inAM~t~in~~LA~~a~~~G~~~i~h-K-~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d 110 (321)
T TIGR01306 33 FKLPVVPANMQTIIDEKLAEQLAENGYFYIMH-R-FDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPE 110 (321)
T ss_pred ecCcEEeeccchhhhHHHHHHHHHcCCEEEEe-c-CCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCC
Confidence 57899887553 2345667778888877753 3 4677777777663 334556665543 33333 344667 69
Q ss_pred EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH
Q 037779 162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~ 241 (310)
+|.+.-. .+.+ ..-.+.++++++..+.|.+ ..|+|.|+++++.+
T Consensus 111 ~i~~D~a-hg~s---------------------------------~~~~~~i~~i~~~~p~~~v--i~GnV~t~e~a~~l 154 (321)
T TIGR01306 111 YITIDIA-HGHS---------------------------------NSVINMIKHIKTHLPDSFV--IAGNVGTPEAVREL 154 (321)
T ss_pred EEEEeCc-cCch---------------------------------HHHHHHHHHHHHhCCCCEE--EEecCCCHHHHHHH
Confidence 8887511 1111 0124456666665455653 36889999999999
Q ss_pred HHcCCCEEEEc
Q 037779 242 MQLGCDGVFVG 252 (310)
Q Consensus 242 ~~~GadgV~VG 252 (310)
+++|||+|.||
T Consensus 155 ~~aGad~I~V~ 165 (321)
T TIGR01306 155 ENAGADATKVG 165 (321)
T ss_pred HHcCcCEEEEC
Confidence 99999999998
No 304
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.014 Score=51.95 Aligned_cols=41 Identities=34% Similarity=0.453 Sum_probs=29.2
Q ss_pred HHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
+-++.+++. .++.| =++|||+|.+|+..++++|+.-+...|
T Consensus 171 edv~lM~~~vg~~vgv--KaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 171 EDVKLMKETVGGRVGV--KASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred HHHHHHHHHhccCcee--eccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 333444443 24666 469999999999999999977666555
No 305
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.80 E-value=0.019 Score=54.11 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=77.9
Q ss_pred cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cC-CC--CcEEeecCC--HHHHHHHHH--hCC
Q 037779 91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HN-FR--VPFVCGCRN--LGESLRRIR--EGA 160 (310)
Q Consensus 91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~-~~--l~v~~~v~t--~~ea~~a~~--~Ga 160 (310)
.++|++.- |-++.++.+..+...|.=+++ +..+++++..++++. +. .. +.+.+++.. .+-+....+ .|+
T Consensus 45 ~giPii~AnMdTV~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~ 123 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMAKALASFDILTAV-HKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPAL 123 (346)
T ss_pred cCCceEecCCCccccHHHHHHHHHCCCeEEE-ecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCC
Confidence 46999873 555666777777777776663 444577777777765 31 12 333333332 122333344 488
Q ss_pred CEEEEec-CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHH
Q 037779 161 AMIRTKG-EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 161 d~I~v~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di 238 (310)
|+|.+.- ..++. .-.+.++.+++. ++++|+ +|.|.|++.+
T Consensus 124 D~iviD~AhGhs~-----------------------------------~~i~~ik~ik~~~P~~~vI---aGNV~T~e~a 165 (346)
T PRK05096 124 NFICIDVANGYSE-----------------------------------HFVQFVAKAREAWPDKTIC---AGNVVTGEMV 165 (346)
T ss_pred CEEEEECCCCcHH-----------------------------------HHHHHHHHHHHhCCCCcEE---EecccCHHHH
Confidence 9998851 11111 124456666664 467774 5999999999
Q ss_pred HHHHHcCCCEEEEcc
Q 037779 239 AMMMQLGCDGVFVGS 253 (310)
Q Consensus 239 ~~~~~~GadgV~VGs 253 (310)
+.++++|||+|-||=
T Consensus 166 ~~Li~aGAD~vKVGI 180 (346)
T PRK05096 166 EELILSGADIVKVGI 180 (346)
T ss_pred HHHHHcCCCEEEEcc
Confidence 999999999997653
No 306
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=96.79 E-value=0.21 Score=44.45 Aligned_cols=192 Identities=17% Similarity=0.138 Sum_probs=110.5
Q ss_pred cCCCHHHHHHHHHcCC-cEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc----hHHHHHHHHcCC
Q 037779 41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH----FVEAQILEAIGV 115 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~----~~~~~~~~~aGa 115 (310)
+..+++..+.+.+.|. +++ --| |+=.+ +.|. .-.+.++++++..+-||.+...-.+ .+++..+.+.+-
T Consensus 6 DsAd~~~i~~~~~~~~i~Gv-TTN--Psll~-k~g~---~~~~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~~~ 78 (213)
T TIGR00875 6 DTANVEEIKKAAELGILAGV-TTN--PSLIA-KEGR---SFWEVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKLAP 78 (213)
T ss_pred cCCCHHHHHHHHhcCCcceE-eCC--HHHHH-hcCC---CHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHhCC
Confidence 4456788888888776 666 222 22222 2221 1256677887776666766543222 245566666665
Q ss_pred Ceee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceeccc
Q 037779 116 DYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
+.++ ++....-....+.+++. |+.+.+ -+.|..++..+.++||+||.+. |+...
T Consensus 79 ~i~iKIP~T~~Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d--------------------- 135 (213)
T TIGR00875 79 NIVVKIPMTSEGLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDD--------------------- 135 (213)
T ss_pred CeEEEeCCCHHHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEeecchHHH---------------------
Confidence 5544 55332223455555554 444444 3789999999999999999875 43110
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRARA 267 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~~~ 267 (310)
...|++ ..-.++.+.++.. .+..|+ +..+.+++++.++..+|+|.+-+.-.+++ .+-....++.
T Consensus 136 -~g~dg~-------~~v~~~~~~~~~~~~~tkIl---aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~ 204 (213)
T TIGR00875 136 -IGGDGM-------KLIEEVKTIFENHAPDTEVI---AASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLER 204 (213)
T ss_pred -cCCCHH-------HHHHHHHHHHHHcCCCCEEE---EeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHH
Confidence 001111 0012233333332 244553 47788999999999999999999887765 2233445566
Q ss_pred HHHHHH
Q 037779 268 IVQAVT 273 (310)
Q Consensus 268 ~~~~~~ 273 (310)
|.+-++
T Consensus 205 F~~d~~ 210 (213)
T TIGR00875 205 FLKDWN 210 (213)
T ss_pred HHHHHH
Confidence 655443
No 307
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.77 E-value=0.066 Score=48.47 Aligned_cols=172 Identities=20% Similarity=0.264 Sum_probs=98.0
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccc-----hHHH
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGH-----FVEA 107 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~-----~~~~ 107 (310)
.+.|+--|+.++++|++++..-- -...+..|- ..+.- .+.++.|...+++||++- +.++. ...+
T Consensus 15 ~~~D~~SAr~~e~~Gf~ai~~sg---~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv 91 (238)
T PF13714_consen 15 NVWDALSARLAERAGFDAIATSG---AGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTV 91 (238)
T ss_dssp EESSHHHHHHHHHTT-SEEEEHH---HHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCEEEech---HHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHH
Confidence 34567789999999999972110 000011111 01111 334567777889999995 33343 2456
Q ss_pred HHHHHcCCCeeeecCC---------CChhHHHHHHHh-----cCCCCcEEeecCCH-------HHH----HHHHHhCCCE
Q 037779 108 QILEAIGVDYVDESEV---------LTPADEENHINK-----HNFRVPFVCGCRNL-------GES----LRRIREGAAM 162 (310)
Q Consensus 108 ~~~~~aGad~v~~~~~---------~~~~~~~~~~~~-----~~~~l~v~~~v~t~-------~ea----~~a~~~Gad~ 162 (310)
..+.++|+.++++-+. .++++....++. ...++.+.+-+... +|+ +...++|||.
T Consensus 92 ~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ 171 (238)
T PF13714_consen 92 RELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADM 171 (238)
T ss_dssp HHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCE
Confidence 7888899999984322 245566555543 23456666655441 232 2334689998
Q ss_pred EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779 163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~ 242 (310)
|.+.+. ....+ ++.+.+..+.|+.+...++ .-++.++.
T Consensus 172 ifi~~~--------------------------------------~~~~~-i~~~~~~~~~Pl~v~~~~~---~~~~~eL~ 209 (238)
T PF13714_consen 172 IFIPGL--------------------------------------QSEEE-IERIVKAVDGPLNVNPGPG---TLSAEELA 209 (238)
T ss_dssp EEETTS--------------------------------------SSHHH-HHHHHHHHSSEEEEETTSS---SS-HHHHH
T ss_pred EEeCCC--------------------------------------CCHHH-HHHHHHhcCCCEEEEcCCC---CCCHHHHH
Confidence 888643 11122 3344333368987665322 26788899
Q ss_pred HcCCCEEEEcccccc
Q 037779 243 QLGCDGVFVGSGVFK 257 (310)
Q Consensus 243 ~~GadgV~VGsai~~ 257 (310)
++|+.-|..|..++.
T Consensus 210 ~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 210 ELGVKRVSYGNSLLR 224 (238)
T ss_dssp HTTESEEEETSHHHH
T ss_pred HCCCcEEEEcHHHHH
Confidence 999999999998886
No 308
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.77 E-value=0.02 Score=53.98 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=75.9
Q ss_pred cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cC-CC--CcEEeecCC--HHHHHHHHHh--CC
Q 037779 91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HN-FR--VPFVCGCRN--LGESLRRIRE--GA 160 (310)
Q Consensus 91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~-~~--l~v~~~v~t--~~ea~~a~~~--Ga 160 (310)
.++||+.- |-++.++.+..+...|.=+++ +..+++++..++++. +. .. +.+.++++. .+-+....++ ++
T Consensus 44 ~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~ 122 (343)
T TIGR01305 44 SGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQL 122 (343)
T ss_pred eCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCC
Confidence 47899873 555666677777777766653 444577777777755 21 12 233333322 2233444455 48
Q ss_pred CEEEEe-cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHH
Q 037779 161 AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 161 d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di 238 (310)
|+|.+. ...++. .-.+.++++++. .+.+|+ .|.|-|++++
T Consensus 123 d~iviD~AhGhs~-----------------------------------~~i~~ik~ir~~~p~~~vi---aGNV~T~e~a 164 (343)
T TIGR01305 123 KFICLDVANGYSE-----------------------------------HFVEFVKLVREAFPEHTIM---AGNVVTGEMV 164 (343)
T ss_pred CEEEEECCCCcHH-----------------------------------HHHHHHHHHHhhCCCCeEE---EecccCHHHH
Confidence 999885 111211 123455666654 344552 5779999999
Q ss_pred HHHHHcCCCEEEEc
Q 037779 239 AMMMQLGCDGVFVG 252 (310)
Q Consensus 239 ~~~~~~GadgV~VG 252 (310)
+.++++|||+|.||
T Consensus 165 ~~Li~aGAD~ikVg 178 (343)
T TIGR01305 165 EELILSGADIVKVG 178 (343)
T ss_pred HHHHHcCCCEEEEc
Confidence 99999999999988
No 309
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.77 E-value=0.012 Score=56.12 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCCHHH----HHHHHHcCC--CEEEEccccccCCCH
Q 037779 211 DLVMQTKQLGRLPVVHFAAGGVATPAD----AAMMMQLGC--DGVFVGSGVFKSGDP 261 (310)
Q Consensus 211 ~l~~~i~~~~~iPVv~ia~GGI~t~~d----i~~~~~~Ga--dgV~VGsai~~~~dp 261 (310)
+..+.+.+..++|++ +++||. +.+. ++.+++.|+ .||++|+++++...+
T Consensus 231 ~~f~~~~~a~~~P~v-vlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~ 285 (340)
T PRK12858 231 KLFREQSDATDLPFI-FLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIE 285 (340)
T ss_pred HHHHHHHhhCCCCEE-EECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhc
Confidence 344555555789998 579998 4554 455667899 999999999986543
No 310
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.76 E-value=0.021 Score=54.04 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCcceEeecc-c-cchHHHHHHHHcCCCeeeecCC----------------------------CChhHHHH
Q 037779 82 QLIKQIKSSVTIPVMAKAR-I-GHFVEAQILEAIGVDYVDESEV----------------------------LTPADEEN 131 (310)
Q Consensus 82 ~~i~~i~~~~~lPv~~kd~-i-~~~~~~~~~~~aGad~v~~~~~----------------------------~~~~~~~~ 131 (310)
+.++.+++.+++||++|.. . .+.+.++.+.++|+|+|..+-. .+....+.
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~ 247 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLL 247 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHH
Confidence 6788889889999999853 2 2446788999999999873210 01112222
Q ss_pred HHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEec
Q 037779 132 HINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 132 ~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~g 167 (310)
.+.+...++++++ ++++..++.+++.+|||.+.+..
T Consensus 248 ~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 248 EVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAG 285 (326)
T ss_pred HHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcH
Confidence 3333222567666 48999999999999999999863
No 311
>PRK01362 putative translaldolase; Provisional
Probab=96.75 E-value=0.21 Score=44.44 Aligned_cols=192 Identities=19% Similarity=0.146 Sum_probs=108.8
Q ss_pred cCCCHHHHHHHHHcCC-cEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc----hHHHHHHHHcCC
Q 037779 41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH----FVEAQILEAIGV 115 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~----~~~~~~~~~aGa 115 (310)
+..+.+..+.+.+.|. +++ --| |+-.+ +.|. .-.+.++++++..+-||.+...-.+ .+++..+.+.+-
T Consensus 6 DsA~~~ei~~~~~~~~i~Gv-TTN--Psll~-k~g~---~~~~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~~~ 78 (214)
T PRK01362 6 DTANVEEIKEANELGVLDGV-TTN--PSLIA-KEGR---DFEEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAP 78 (214)
T ss_pred ecCCHHHHHHHHhCCCcceE-cCC--HHHHH-hcCC---CHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHhCC
Confidence 3456677777777665 565 222 22222 2221 1245677888777666766533222 245566666665
Q ss_pred Ceee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceeccc
Q 037779 116 DYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (310)
..++ ++....--...+.+++. |+.+.+ -+.|..++..+.++||+||.+. |+...
T Consensus 79 ~i~iKIP~T~~G~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d--------------------- 135 (214)
T PRK01362 79 NVVVKIPMTPEGLKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDD--------------------- 135 (214)
T ss_pred CEEEEeCCCHHHHHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEeecchHhh---------------------
Confidence 5444 55332223445555554 444443 3789999999999999999875 44210
Q ss_pred ccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHHHH
Q 037779 193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRARA 267 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~~~ 267 (310)
...|++ ..-.++.+.+.+.. +.-| .+..+.++.++.++..+|+|.+-++-.+++ .+-....++.
T Consensus 136 -~g~dg~-------~~i~~~~~~~~~~~~~tki---laAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~ 204 (214)
T PRK01362 136 -IGTDGM-------ELIEDIREIYDNYGFDTEI---IAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEK 204 (214)
T ss_pred -cCCCHH-------HHHHHHHHHHHHcCCCcEE---EEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHH
Confidence 011111 00122333333322 2233 257788999999999999999999876665 3344556666
Q ss_pred HHHHHH
Q 037779 268 IVQAVT 273 (310)
Q Consensus 268 ~~~~~~ 273 (310)
|.+-+.
T Consensus 205 F~~dw~ 210 (214)
T PRK01362 205 FLADWE 210 (214)
T ss_pred HHHHHH
Confidence 665544
No 312
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.74 E-value=0.028 Score=54.60 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=32.7
Q ss_pred HHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
.++++++++. .+++++ .|+|.|++++..++++|||+|.+|
T Consensus 182 ~~~v~~ik~~~p~~~vi---~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 182 IELVKKIKTKYPNLDLI---AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHhhCCCCcEE---EEecCCHHHHHHHHHcCCCEEEEC
Confidence 4567777764 356774 499999999999999999999987
No 313
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.74 E-value=0.042 Score=52.00 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=79.1
Q ss_pred cCcceEeecccc--chHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcC-CCCcEEeecCC-H---HHHHHHHHhCC--C
Q 037779 91 VTIPVMAKARIG--HFVEAQILEAIGVDYVDESEVLTPADEENHINKHN-FRVPFVCGCRN-L---GESLRRIREGA--A 161 (310)
Q Consensus 91 ~~lPv~~kd~i~--~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~-~~l~v~~~v~t-~---~ea~~a~~~Ga--d 161 (310)
...|++++..-. +.+.++.+.+.|.-.++.. +++++...+.++.. .++.+.+.+.+ . +++....++|+ |
T Consensus 36 l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k--~~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d 113 (326)
T PRK05458 36 FKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR--FDPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPE 113 (326)
T ss_pred ecCcEEEecccchhHHHHHHHHHHcCCEEEEec--CCHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCC
Confidence 467998875532 3356677777887777533 36666666665532 34555455433 3 45556667754 9
Q ss_pred EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHH
Q 037779 162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~ 240 (310)
+|.+.... ++. ..-.++++++++.. ++||+ .|.|.|++++..
T Consensus 114 ~i~iD~a~--gh~--------------------------------~~~~e~I~~ir~~~p~~~vi---~g~V~t~e~a~~ 156 (326)
T PRK05458 114 YITIDIAH--GHS--------------------------------DSVINMIQHIKKHLPETFVI---AGNVGTPEAVRE 156 (326)
T ss_pred EEEEECCC--Cch--------------------------------HHHHHHHHHHHhhCCCCeEE---EEecCCHHHHHH
Confidence 99885211 110 11355677777753 46774 477999999999
Q ss_pred HHHcCCCEEEEc
Q 037779 241 MMQLGCDGVFVG 252 (310)
Q Consensus 241 ~~~~GadgV~VG 252 (310)
+.++|+|++.||
T Consensus 157 l~~aGad~i~vg 168 (326)
T PRK05458 157 LENAGADATKVG 168 (326)
T ss_pred HHHcCcCEEEEC
Confidence 999999999988
No 314
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.73 E-value=0.0071 Score=55.35 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=39.0
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+.++++.+.+ .++|| -+.|||.+ +++.+++++||+-|++||..++.
T Consensus 72 n~~~i~~i~~-~~~~v--qvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~ 117 (262)
T PLN02446 72 LAAALEALRA-YPGGL--QVGGGVNS-ENAMSYLDAGASHVIVTSYVFRD 117 (262)
T ss_pred cHHHHHHHHh-CCCCE--EEeCCccH-HHHHHHHHcCCCEEEEchHHHhC
Confidence 4667777777 66888 56999985 99999999999999999988873
No 315
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.72 E-value=0.0067 Score=54.62 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=63.3
Q ss_pred cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchH
Q 037779 27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFV 105 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~ 105 (310)
..|+.+++|.|. .+....+.++.++++|+++|.+ +.+.. |. ...+.+.|+++++.++ +||+.+..+.+++
T Consensus 134 ~~PVsvKiR~~~-~~~~~~~~a~~l~~aGad~i~V------d~~~~-g~-~~a~~~~I~~i~~~~~~ipIIgNGgI~s~e 204 (231)
T TIGR00736 134 NKPIFVKIRGNC-IPLDELIDALNLVDDGFDGIHV------DAMYP-GK-PYADMDLLKILSEEFNDKIIIGNNSIDDIE 204 (231)
T ss_pred CCcEEEEeCCCC-CcchHHHHHHHHHHcCCCEEEE------eeCCC-CC-chhhHHHHHHHHHhcCCCcEEEECCcCCHH
Confidence 468889999876 2223368999999999999843 22222 21 1135788999999984 9999999988888
Q ss_pred HHHHHHHcCCCeeee
Q 037779 106 EAQILEAIGVDYVDE 120 (310)
Q Consensus 106 ~~~~~~~aGad~v~~ 120 (310)
++..+..+|||.|-+
T Consensus 205 da~e~l~~GAd~Vmv 219 (231)
T TIGR00736 205 SAKEMLKAGADFVSV 219 (231)
T ss_pred HHHHHHHhCCCeEEE
Confidence 887777799999863
No 316
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.70 E-value=0.021 Score=54.53 Aligned_cols=169 Identities=20% Similarity=0.335 Sum_probs=94.8
Q ss_pred cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-----------cCCCCcEEeec--CC--HHHHH
Q 037779 91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-----------HNFRVPFVCGC--RN--LGESL 153 (310)
Q Consensus 91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-----------~~~~l~v~~~v--~t--~~ea~ 153 (310)
.++|++-- |-+...+.+..+...|.=.|+.. ..++++..+.+++ ...++.+.+.+ +. .+-+.
T Consensus 36 l~iPivsa~MDtVte~~mAiama~~Gglgvih~-~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~ 114 (352)
T PF00478_consen 36 LKIPIVSAPMDTVTESEMAIAMARLGGLGVIHR-NMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAE 114 (352)
T ss_dssp ESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEES-SSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHH
T ss_pred ecCceEecCccccchHHHHHHHHHhcCCceecC-CCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHH
Confidence 47898874 44444556666666777666432 2344444333322 11235555544 32 44555
Q ss_pred HHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCC
Q 037779 154 RRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGG 231 (310)
Q Consensus 154 ~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GG 231 (310)
...++|+|++.+... .++.+ -.+.++.+++. .++||+ .|.
T Consensus 115 ~L~~agvD~ivID~a~g~s~~-----------------------------------~~~~ik~ik~~~~~~~vi---aGN 156 (352)
T PF00478_consen 115 ALVEAGVDVIVIDSAHGHSEH-----------------------------------VIDMIKKIKKKFPDVPVI---AGN 156 (352)
T ss_dssp HHHHTT-SEEEEE-SSTTSHH-----------------------------------HHHHHHHHHHHSTTSEEE---EEE
T ss_pred HHHHcCCCEEEccccCccHHH-----------------------------------HHHHHHHHHHhCCCceEE---ecc
Confidence 666789999988632 11111 13345666654 457884 599
Q ss_pred CCCHHHHHHHHHcCCCEEEEc---ccccc------CCCH-HHHHHHHHHHHHcCCCh-----------hhHHhhhhccCC
Q 037779 232 VATPADAAMMMQLGCDGVFVG---SGVFK------SGDP-VRRARAIVQAVTNYSDP-----------DVLAEVSCGLGE 290 (310)
Q Consensus 232 I~t~~di~~~~~~GadgV~VG---sai~~------~~dp-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 290 (310)
|.|.+.+..++++|||+|-|| ..++. -.-| ...+.+..+..+.+.-| ++..-++...-.
T Consensus 157 V~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~ 236 (352)
T PF00478_consen 157 VVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADA 236 (352)
T ss_dssp E-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SE
T ss_pred cCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccc
Confidence 999999999999999999998 22332 1223 23345555555554333 445666666666
Q ss_pred ceeccccc
Q 037779 291 AMVGIDLN 298 (310)
Q Consensus 291 ~~~~~~~~ 298 (310)
.|+|.-|.
T Consensus 237 VMlG~llA 244 (352)
T PF00478_consen 237 VMLGSLLA 244 (352)
T ss_dssp EEESTTTT
T ss_pred eeechhhc
Confidence 67776554
No 317
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.68 E-value=0.11 Score=45.21 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779 105 VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR 182 (310)
Q Consensus 105 ~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~ 182 (310)
..++.+.+.|++.+-.+ ......+.++.+++..+++.+.+ .++|.+++..+.+.|++++..-+ .
T Consensus 20 ~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~--~------------ 85 (190)
T cd00452 20 ALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG--L------------ 85 (190)
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC--C------------
Confidence 45677888999998643 22233445566665444566666 47889999999999999985321 0
Q ss_pred HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779 183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V 251 (310)
+.++....++ ..+|+ + =|+.|++++.++.++|||.+.+
T Consensus 86 --------------------------~~~~~~~~~~-~~~~~--i--~gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 86 --------------------------DPEVVKAANR-AGIPL--L--PGVATPTEIMQALELGADIVKL 123 (190)
T ss_pred --------------------------CHHHHHHHHH-cCCcE--E--CCcCCHHHHHHHHHCCCCEEEE
Confidence 1223333333 34677 3 3788999999999999999997
No 318
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.16 Score=46.89 Aligned_cols=176 Identities=20% Similarity=0.213 Sum_probs=97.3
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC------CCCCChHHHHHHHhhcCcceEeec--cccc----hHHH
Q 037779 40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGV------ARMSDPQLIKQIKSSVTIPVMAKA--RIGH----FVEA 107 (310)
Q Consensus 40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~------~~~~~~~~i~~i~~~~~lPv~~kd--~i~~----~~~~ 107 (310)
..+-|+--|+.++++|++++ .+-. ..+...-|- .+..-.+.+++|.+.+++||++.. +.|. ...+
T Consensus 23 pg~~d~~sA~la~~aGF~al-~~sg--~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV 99 (289)
T COG2513 23 PGAWDAGSALLAERAGFKAL-YLSG--AGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTV 99 (289)
T ss_pred cCCcCHHHHHHHHHcCCeEE-Eecc--HHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHH
Confidence 34556778999999999998 3310 001010011 011123456778888999999952 3332 1355
Q ss_pred HHHHHcCCCeeeecCC--------------CChhHHHHHHHh---cCCCCcEEeecCC-------HHH----HHHHHHhC
Q 037779 108 QILEAIGVDYVDESEV--------------LTPADEENHINK---HNFRVPFVCGCRN-------LGE----SLRRIREG 159 (310)
Q Consensus 108 ~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~---~~~~l~v~~~v~t-------~~e----a~~a~~~G 159 (310)
..++++|+.++++-+. .++++....++. ...+..+++..+| .++ +....++|
T Consensus 100 ~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAG 179 (289)
T COG2513 100 RELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAG 179 (289)
T ss_pred HHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcC
Confidence 6788899999884222 223344444433 1111222222222 112 12233556
Q ss_pred CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC--CCEEEEccCCCCCHHH
Q 037779 160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR--LPVVHFAAGGVATPAD 237 (310)
Q Consensus 160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~--iPVv~ia~GGI~t~~d 237 (310)
||.|...+ +. +.+.++.+.+..+ +|+.+ .++|-.-.-.
T Consensus 180 AD~if~~a--------------------------------------l~-~~e~i~~f~~av~~pl~~N~-t~~g~tp~~~ 219 (289)
T COG2513 180 ADAIFPEA--------------------------------------LT-DLEEIRAFAEAVPVPLPANI-TEFGKTPLLT 219 (289)
T ss_pred CcEEcccc--------------------------------------CC-CHHHHHHHHHhcCCCeeeEe-eccCCCCCcC
Confidence 66655431 11 2444555555444 67764 4666543456
Q ss_pred HHHHHHcCCCEEEEccccccC
Q 037779 238 AAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 238 i~~~~~~GadgV~VGsai~~~ 258 (310)
+.++.++|++-|+.|...++.
T Consensus 220 ~~~L~~~Gv~~V~~~~~~~ra 240 (289)
T COG2513 220 VAELAELGVKRVSYGLTAFRA 240 (289)
T ss_pred HHHHHhcCceEEEECcHHHHH
Confidence 788889999999999988874
No 319
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.56 E-value=0.19 Score=46.87 Aligned_cols=174 Identities=15% Similarity=0.218 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhh-hcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccch----HHHH
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIR-AQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGHF----VEAQ 108 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~~----~~~~ 108 (310)
+.|+--|+.++.+|++++..-- -... +-.|. ..+.- .+.+++|.+.+++||++- .+.+.. ..++
T Consensus 24 ~~Da~SAri~e~~Gf~ai~~Sg---~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~ 100 (292)
T PRK11320 24 TINAYHALLAERAGFKAIYLSG---GGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVK 100 (292)
T ss_pred CCCHHHHHHHHHcCCCEEEeCH---HHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHH
Confidence 4566779999999999972110 0011 00011 01111 334566777889999985 233322 3467
Q ss_pred HHHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecCC-----HHHH----HHHHHhCC
Q 037779 109 ILEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCRN-----LGES----LRRIREGA 160 (310)
Q Consensus 109 ~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~t-----~~ea----~~a~~~Ga 160 (310)
.+.++||.+|++-+. .+.++....++. .+.++.+++-+.. .+|+ +...++||
T Consensus 101 ~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGA 180 (292)
T PRK11320 101 SMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGA 180 (292)
T ss_pred HHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCC
Confidence 888899999984332 233444444432 1223333333322 3333 23345677
Q ss_pred CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCH-HHH
Q 037779 161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP-ADA 238 (310)
Q Consensus 161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~-~di 238 (310)
|.|.+.+. .+.+.++.+.+..+.|+++ +.++|- +| -.+
T Consensus 181 D~ifi~~~---------------------------------------~~~~~i~~~~~~~~~Pl~~n~~~~~~-~p~~s~ 220 (292)
T PRK11320 181 DMIFPEAM---------------------------------------TELEMYRRFADAVKVPILANITEFGA-TPLFTT 220 (292)
T ss_pred CEEEecCC---------------------------------------CCHHHHHHHHHhcCCCEEEEeccCCC-CCCCCH
Confidence 77776532 0233344444444568732 234553 33 368
Q ss_pred HHHHHcCCCEEEEccccccC
Q 037779 239 AMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 239 ~~~~~~GadgV~VGsai~~~ 258 (310)
.++.++|++-|..|...+.+
T Consensus 221 ~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 221 EELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHcCCcEEEEChHHHHH
Confidence 88899999999999988763
No 320
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.55 E-value=0.25 Score=46.04 Aligned_cols=190 Identities=13% Similarity=0.184 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
.+.+++++.+...|.++. +...++++ .. .-...++.+.+..++||.++ |....++.+..+..+|.+.|-++ +.
T Consensus 32 avi~AAe~~~sPvIlq~~--~~~~~~~~-~~--~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~ 106 (287)
T PF01116_consen 32 AVIEAAEELNSPVILQIS--PSEVKYMG-LE--YLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSA 106 (287)
T ss_dssp HHHHHHHHTTS-EEEEEE--HHHHHHHH-HH--HHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TT
T ss_pred HHHHHHHHhCCCEEEEcc--hhhhhhhh-HH--HHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCc
Confidence 357788888888876652 22222221 10 00335667777789999886 44445677888899999998733 33
Q ss_pred CChh-------HHHHHHHhcCCCCcEEee--------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCch
Q 037779 124 LTPA-------DEENHINKHNFRVPFVCG--------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNI 174 (310)
Q Consensus 124 ~~~~-------~~~~~~~~~~~~l~v~~~--------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~ 174 (310)
++.+ ++.+.+++.+ +.+=.+ .++++++++-. +.|+|.+.+. |..++..
T Consensus 107 l~~eeNi~~T~~vv~~ah~~g--v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y- 183 (287)
T PF01116_consen 107 LPFEENIAITREVVEYAHAYG--VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMY- 183 (287)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT---EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSB-
T ss_pred CCHHHHHHHHHHHHHhhhhhC--CEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccccc-
Confidence 3433 3333444333 211111 13677777654 6799988775 4433211
Q ss_pred HHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
+.. . ...-++++++.+.+.. ++|+|.=-++|+ ..++++++.+.|..-|=++|
T Consensus 184 -----------------~~~-~--------~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T 236 (287)
T PF01116_consen 184 -----------------KGG-K--------KPKLDFDRLKEIREAVPDIPLVLHGGSGL-PDEQIRKAIKNGISKINIGT 236 (287)
T ss_dssp -----------------SSS-S--------STC--HHHHHHHHHHHHTSEEEESSCTTS--HHHHHHHHHTTEEEEEESH
T ss_pred -----------------CCC-C--------CcccCHHHHHHHHHhcCCCCEEEECCCCC-CHHHHHHHHHcCceEEEEeh
Confidence 100 0 0122688999999987 999976555666 36799999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcC
Q 037779 254 GVFKSGDPVRRARAIVQAVTNY 275 (310)
Q Consensus 254 ai~~~~dp~~~~~~~~~~~~~~ 275 (310)
.+.. ...+.+++.+...
T Consensus 237 ~~~~-----a~~~~~~~~~~~~ 253 (287)
T PF01116_consen 237 ELRR-----AFTDALREYLAEN 253 (287)
T ss_dssp HHHH-----HHHHHHHHHHHHS
T ss_pred HHHH-----HHHHHHHHHHHhC
Confidence 8875 2344444444443
No 321
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.54 E-value=0.034 Score=55.65 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec--
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES-- 121 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-- 121 (310)
.+.++.+.++|++.| .+ |.. +|.. ....+.++++++.. ++||++++. .+.+.++.+.++|||+|...
T Consensus 243 ~~~~~~l~~ag~d~i-~i-----d~a--~G~s-~~~~~~i~~ik~~~~~~~v~aG~V-~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 243 IERAAALIEAGVDVL-VV-----DSS--QGNS-IYQIDMIKKLKSNYPHVDIIAGNV-VTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHCCCCEE-EE-----ecC--CCCc-hHHHHHHHHHHhhCCCceEEECCc-CCHHHHHHHHHcCCCEEEECCc
Confidence 478999999999998 34 221 2211 11156889999885 788888543 34568889999999998521
Q ss_pred CC------------CChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779 122 EV------------LTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 122 ~~------------~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
.. .+....+..+.+ +..++++++ ++.|..|+.+|+.+||+.|.+.
T Consensus 313 ~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 313 SGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred CCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 10 011111112221 235689999 7999999999999999999875
No 322
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=96.54 E-value=0.047 Score=49.77 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=34.4
Q ss_pred CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~ 266 (310)
+++| +..|+| +++++.+++. .++||++||++-++.+++...++
T Consensus 203 ~~~I--lYGGSV-~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii~ 246 (250)
T PRK00042 203 KVRI--LYGGSV-KPDNAAELMAQPDIDGALVGGASLKAEDFLAIVK 246 (250)
T ss_pred CceE--EEcCCC-CHHHHHHHhcCCCCCEEEEeeeeechHHHHHHHH
Confidence 4678 679999 5888888775 69999999999998777665544
No 323
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.50 E-value=0.018 Score=54.42 Aligned_cols=88 Identities=25% Similarity=0.294 Sum_probs=64.8
Q ss_pred ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779 28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE 106 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~ 106 (310)
.|+..++|.|+-.+..+ .++++.++++|+++|....+. .+.. +.|. .+.+.++++++.+++||+.+..+.+.++
T Consensus 134 ~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt-~~~~-~~G~---a~~~~i~~ik~~~~iPVI~nGgI~s~~d 208 (321)
T PRK10415 134 VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT-RACL-FNGE---AEYDSIRAVKQKVSIPVIANGDITDPLK 208 (321)
T ss_pred CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCc-cccc-cCCC---cChHHHHHHHHhcCCcEEEeCCCCCHHH
Confidence 47888999988655434 488999999999998433111 1111 2232 3578999999999999999999987778
Q ss_pred HHHHHH-cCCCeeee
Q 037779 107 AQILEA-IGVDYVDE 120 (310)
Q Consensus 107 ~~~~~~-aGad~v~~ 120 (310)
++.+.+ .|+|.|.+
T Consensus 209 a~~~l~~~gadgVmi 223 (321)
T PRK10415 209 ARAVLDYTGADALMI 223 (321)
T ss_pred HHHHHhccCCCEEEE
Confidence 776665 79999974
No 324
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.49 E-value=0.054 Score=49.94 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=95.8
Q ss_pred cceeeeecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH
Q 037779 4 TGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL 83 (310)
Q Consensus 4 ~~~~~~~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~ 83 (310)
-||--..++.-|-|+|++- ..|+.-+.|.|+ ...|+.+++.|++.| +- |+. +.+..+.
T Consensus 48 ggv~R~~~p~~I~~I~~~V----~iPVig~~kigh------~~Ea~~L~~~GvDiI-De----Te~-------lrPade~ 105 (287)
T TIGR00343 48 GGVARMSDPKMIKEIMDAV----SIPVMAKVRIGH------FVEAQILEALGVDYI-DE----SEV-------LTPADWT 105 (287)
T ss_pred CCeeecCCHHHHHHHHHhC----CCCEEEEeeccH------HHHHHHHHHcCCCEE-Ec----cCC-------CCcHHHH
Confidence 4555556666677777642 467777777765 778999999999998 42 221 1112456
Q ss_pred HHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec------C---------------------------------CC
Q 037779 84 IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES------E---------------------------------VL 124 (310)
Q Consensus 84 i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~------~---------------------------------~~ 124 (310)
++.++..+++|+++... +..++....+.|+|.|-.+ + ..
T Consensus 106 ~~~~K~~f~vpfmad~~--~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~ 183 (287)
T TIGR00343 106 FHIDKKKFKVPFVCGAR--DLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELR 183 (287)
T ss_pred HHHHHHHcCCCEEccCC--CHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccC
Confidence 77888888999988744 4467888889999998622 1 01
Q ss_pred ChhHHHHHHHhcCCCCcEE--e--ecCCHHHHHHHHHhCCCEEEEecC
Q 037779 125 TPADEENHINKHNFRVPFV--C--GCRNLGESLRRIREGAAMIRTKGE 168 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~--~--~v~t~~ea~~a~~~Gad~I~v~g~ 168 (310)
.+.++++.+.+. ..++++ + +++|++++..+.++|++.+.+.+.
T Consensus 184 ~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSa 230 (287)
T TIGR00343 184 VPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 230 (287)
T ss_pred CCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHH
Confidence 233455555442 347776 3 488999999999999999988633
No 325
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.48 E-value=0.028 Score=53.71 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=63.7
Q ss_pred ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------C-CCChhHHHHHHHh-cCCCCcEEee--cCC
Q 037779 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------E-VLTPADEENHINK-HNFRVPFVCG--CRN 148 (310)
Q Consensus 80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~-~~~~~~~~~~~~~-~~~~l~v~~~--v~t 148 (310)
+.++++.+++.+++||++|. +.+.+.++.+.++|+|+|..+ + .....+.+..+.+ .+..++++++ +.+
T Consensus 209 ~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~ 287 (351)
T cd04737 209 SPADIEFIAKISGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRR 287 (351)
T ss_pred CHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 56888999999999999995 345678899999999998742 1 1112233444443 2234777774 999
Q ss_pred HHHHHHHHHhCCCEEEEe
Q 037779 149 LGESLRRIREGAAMIRTK 166 (310)
Q Consensus 149 ~~ea~~a~~~Gad~I~v~ 166 (310)
..++.+++.+||+.|.+.
T Consensus 288 g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 288 GEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999999885
No 326
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=96.48 E-value=0.065 Score=47.42 Aligned_cols=148 Identities=24% Similarity=0.316 Sum_probs=80.2
Q ss_pred hHHHHHHHhhcCcceEeeccc--------cchHHHHHHHHcCCCeee-ec-CC-CChhHHHHHHHh-cCCCCcEEeecCC
Q 037779 81 PQLIKQIKSSVTIPVMAKARI--------GHFVEAQILEAIGVDYVD-ES-EV-LTPADEENHINK-HNFRVPFVCGCRN 148 (310)
Q Consensus 81 ~~~i~~i~~~~~lPv~~kd~i--------~~~~~~~~~~~aGad~v~-~~-~~-~~~~~~~~~~~~-~~~~l~v~~~v~t 148 (310)
+-.+..+++.+++++..++.- |. .-++.+.++|+++++ +| +- +...++.+.++. ...++.+++.+..
T Consensus 41 ~~~L~~~~~~~~i~vgAQn~~~~~~Ga~TGe-vS~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~ 119 (205)
T TIGR00419 41 FVDLPMIKREVEIPVYAQHVDAVLSGAHTGE-ISAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNN 119 (205)
T ss_pred HHHHHHHHHhcCceEEecccccccCCCccCc-CCHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHH
Confidence 445666666556666665322 21 346789999999988 33 11 233334444443 4467877777754
Q ss_pred HHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEE
Q 037779 149 LGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVV 225 (310)
Q Consensus 149 ~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv 225 (310)
..+..........+|..... ++||... +++.. ..-...++..++. .+++|
T Consensus 120 v~~q~~~~~~~~~vIAYEPvWAIGtG~~a-------------------s~~~~-------~~v~~~ir~~~~~~~~~~I- 172 (205)
T TIGR00419 120 VLTTAAAAALEPDVVAVEPPELIGTGIPV-------------------SPAQP-------EVVHGSVRAVKEVNESVRV- 172 (205)
T ss_pred HHHHHHhhhhcCeEEEECCHHHhCCCCCC-------------------CHHHH-------HHHHHHHHhhhhhcCCceE-
Confidence 44333322233344543211 2333210 11000 0012222322221 35778
Q ss_pred EEccCCCCCHHHHHHHHH-cCCCEEEEccccccC
Q 037779 226 HFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS 258 (310)
Q Consensus 226 ~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~ 258 (310)
+..|+| +++++.+++. .++||++||++-+++
T Consensus 173 -lYGGSV-~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 173 -LCGAGI-STGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred -EEeCCC-CHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 679999 5888888775 699999999998764
No 327
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.46 E-value=0.51 Score=44.56 Aligned_cols=181 Identities=9% Similarity=0.051 Sum_probs=102.2
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCC-ChHHHHHHHhhc--CcceEee-ccccchHHHHHHHHcCCCeeeec-
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMS-DPQLIKQIKSSV--TIPVMAK-ARIGHFVEAQILEAIGVDYVDES- 121 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~-~~~~i~~i~~~~--~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~- 121 (310)
..+++++.++..|.++. +... .+.|..... -...++...+.. .+||.++ |.-.+++.+..+.++|-+.|-++
T Consensus 40 vi~AAee~~sPvIlq~s--~~~~-~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~ 116 (321)
T PRK07084 40 IIQACVETKSPVILQVS--KGAR-KYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDG 116 (321)
T ss_pred HHHHHHHhCCCEEEEec--hhHH-hhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeC
Confidence 46777777888775551 1111 222210000 011123333333 6899886 33335677888899999998733
Q ss_pred CCCChh-------HHHHHHHhcCCCCcEEee-----------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchH
Q 037779 122 EVLTPA-------DEENHINKHNFRVPFVCG-----------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIV 175 (310)
Q Consensus 122 ~~~~~~-------~~~~~~~~~~~~l~v~~~-----------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~ 175 (310)
+.++.+ ++.+.++..+ +.+=.+ .++++|+.+-. +.|+|.+.+. |..++..
T Consensus 117 S~lp~eeNI~~T~evv~~Ah~~G--vsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y-- 192 (321)
T PRK07084 117 SHLPYEENVALTKKVVEYAHQFD--VTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAY-- 192 (321)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccc--
Confidence 223333 3333333322 211111 34677887766 4688888764 4332211
Q ss_pred HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccC---------------------CCC
Q 037779 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAG---------------------GVA 233 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~G---------------------GI~ 233 (310)
+. .+ +. ....-++++++.+.+.. ++|+|.=-++ ||
T Consensus 193 ----------------~~-~~-~~----~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi- 249 (321)
T PRK07084 193 ----------------KF-KP-GQ----CPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGI- 249 (321)
T ss_pred ----------------cC-CC-CC----CCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCC-
Confidence 10 00 00 00123688999998876 6998754444 44
Q ss_pred CHHHHHHHHHcCCCEEEEcccccc
Q 037779 234 TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 234 t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..+++++++++|..-|=++|.+..
T Consensus 250 ~~e~~~kai~~GI~KINi~Tdl~~ 273 (321)
T PRK07084 250 PEEQLRKAAKSAVCKINIDSDGRL 273 (321)
T ss_pred CHHHHHHHHHcCCceeccchHHHH
Confidence 358999999999999999998765
No 328
>PRK14565 triosephosphate isomerase; Provisional
Probab=96.46 E-value=0.055 Score=48.91 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=35.8
Q ss_pred CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHHHH
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~~~ 267 (310)
+++| +..|+| +++++..+++. +.||++||++.++++++...++.
T Consensus 189 ~~~I--lYGGSV-~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~ 233 (237)
T PRK14565 189 KSHI--IYGGSV-NQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ 233 (237)
T ss_pred CceE--EEcCcc-CHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence 5788 679999 59999999974 99999999999987766555543
No 329
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=96.43 E-value=0.5 Score=48.61 Aligned_cols=188 Identities=10% Similarity=0.059 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH-HHHHHhhcCc--ceEeecccc-chHHH-HHHHHcCCC
Q 037779 42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL-IKQIKSSVTI--PVMAKARIG-HFVEA-QILEAIGVD 116 (310)
Q Consensus 42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~-i~~i~~~~~l--Pv~~kd~i~-~~~~~-~~~~~aGad 116 (310)
..+.+.++.+.++|++.+-.+ ..+ .|-+.-+++. .+++.+...- +-.+..+.+ ..+.+ +.+...+.|
T Consensus 10 it~~eda~~a~~~gaD~iGfI-f~~-------~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld 81 (610)
T PRK13803 10 IKDSALISKAVDMLPDFIGFI-FYE-------KSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGID 81 (610)
T ss_pred CCcHHHHHHHHHcCCCEEEEE-ecC-------CCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 456889999999999998322 112 2223344677 6777665421 111222332 22333 556679999
Q ss_pred eeeecCCCCh--hHHHHHHHhcCCCCcEEeecCCHHHHHHHH--HhCCCEEEEecC--CCCCchHHHHHHHHHhhcceec
Q 037779 117 YVDESEVLTP--ADEENHINKHNFRVPFVCGCRNLGESLRRI--REGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRV 190 (310)
Q Consensus 117 ~v~~~~~~~~--~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~--~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~ 190 (310)
.|..+...+. .+..+.+++....+.-...+.+..+...+. ..-+|++-+... .++|+
T Consensus 82 ~vQLHG~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt----------------- 144 (610)
T PRK13803 82 FVQLHGAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGS----------------- 144 (610)
T ss_pred EEEECCCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCC-----------------
Confidence 9875433331 344445544222222222333333322222 223566655421 11111
Q ss_pred ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCC--EEEEccccccC---CCHHHH
Q 037779 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCD--GVFVGSGVFKS---GDPVRR 264 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~Gad--gV~VGsai~~~---~dp~~~ 264 (310)
+..-+|+.++.+. .+.|++ .+||| +++|+.++++ ..+. ||=+-|.+=.. .|+ ..
T Consensus 145 --------------G~~fdw~~~~~~~--~~~p~i--LAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~-~k 204 (610)
T PRK13803 145 --------------GKSFDWEKFYNYN--FKFPFF--LSGGL-SPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKL-TL 204 (610)
T ss_pred --------------CCccChHHhhhcc--cCCcEE--EEeCC-CHHHHHHHHhhhCCCceEEEccCcccCCCCCcCH-HH
Confidence 1122566655432 245884 48999 6999999997 4677 99999999854 344 56
Q ss_pred HHHHHHHHHc
Q 037779 265 ARAIVQAVTN 274 (310)
Q Consensus 265 ~~~~~~~~~~ 274 (310)
+++|.+.++.
T Consensus 205 i~~fi~~~k~ 214 (610)
T PRK13803 205 LKSFITNVKK 214 (610)
T ss_pred HHHHHHHHHH
Confidence 7888888876
No 330
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.42 E-value=0.045 Score=50.01 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=20.2
Q ss_pred CCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~~Gad 247 (310)
++.| =|+|||.|.+++.+++++|.+
T Consensus 195 ~vgI--KAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 195 TVGF--KPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred CeeE--EccCCCCCHHHHHHHHHHHHH
Confidence 3555 469999999999999998643
No 331
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.40 E-value=0.21 Score=46.59 Aligned_cols=176 Identities=15% Similarity=0.190 Sum_probs=95.5
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhc-CCC---CCCC---ChHHHHHHHhhcCcceEee--ccccc----hHHH
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQ-GGV---ARMS---DPQLIKQIKSSVTIPVMAK--ARIGH----FVEA 107 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~-~G~---~~~~---~~~~i~~i~~~~~lPv~~k--d~i~~----~~~~ 107 (310)
.+.|.--|+.++.+|++++..-- ...-+. .|. ..+. ....++.|.+.+++||++- ++.+. ...+
T Consensus 22 ~v~Da~SArl~e~aGf~ai~~sg---~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V 98 (294)
T TIGR02319 22 SAYDALSAKVIQQAGFPAVHMTG---SGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRAT 98 (294)
T ss_pred cCcCHHHHHHHHHcCCCEEEecH---HHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHH
Confidence 34566779999999999983100 001011 111 0111 1334567777889999985 23332 2346
Q ss_pred HHHHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecC-----CHHHH----HHHHHhC
Q 037779 108 QILEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCR-----NLGES----LRRIREG 159 (310)
Q Consensus 108 ~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~-----t~~ea----~~a~~~G 159 (310)
+.+.++|+.+|++-+. .+.++....++. ...++.+.+-+. ..+|+ +...++|
T Consensus 99 ~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAG 178 (294)
T TIGR02319 99 REFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAG 178 (294)
T ss_pred HHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhC
Confidence 7888899999984332 233344444432 112233333222 13333 2233567
Q ss_pred CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCHHHH
Q 037779 160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPADA 238 (310)
Q Consensus 160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~~di 238 (310)
||.|.+.+. .+.+.++.+.+..+.|++. +..||-.-.-.+
T Consensus 179 AD~ifi~~~---------------------------------------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~ 219 (294)
T TIGR02319 179 ADCIFLEAM---------------------------------------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTT 219 (294)
T ss_pred CCEEEecCC---------------------------------------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCH
Confidence 777776532 0223344444444557621 234553222578
Q ss_pred HHHHHcCCCEEEEccccccC
Q 037779 239 AMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 239 ~~~~~~GadgV~VGsai~~~ 258 (310)
.++.++|++-|..+..++.+
T Consensus 220 ~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 220 KELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHcCCcEEEEcHHHHHH
Confidence 89999999999999988774
No 332
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.39 E-value=0.032 Score=50.40 Aligned_cols=79 Identities=28% Similarity=0.366 Sum_probs=60.0
Q ss_pred cCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779 35 RGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 35 ~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~ 111 (310)
+.|+.. .| .|+..++++++.|++.++-+. +.- ..| .-..+++.|+.+++..++||++..+|++.+++..+.
T Consensus 121 ~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg----~pI-Gsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am 194 (248)
T cd04728 121 KEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG----SPI-GSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM 194 (248)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----cCC-CCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH
Confidence 446543 33 458999999999999985331 111 112 124569999999998899999999999889999999
Q ss_pred HcCCCeee
Q 037779 112 AIGVDYVD 119 (310)
Q Consensus 112 ~aGad~v~ 119 (310)
+.|+|.|+
T Consensus 195 elGAdgVl 202 (248)
T cd04728 195 ELGADAVL 202 (248)
T ss_pred HcCCCEEE
Confidence 99999998
No 333
>PRK02227 hypothetical protein; Provisional
Probab=96.38 E-value=0.65 Score=41.89 Aligned_cols=199 Identities=20% Similarity=0.183 Sum_probs=111.2
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee--ccccch----HHHHHH
Q 037779 39 IMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK--ARIGHF----VEAQIL 110 (310)
Q Consensus 39 i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k--d~i~~~----~~~~~~ 110 (310)
+.++.+.+.|+.+.++|++.| ++ +++.. |+.=-..+..+++|++.+. .|++.- |+-... ..+...
T Consensus 4 LvSvr~~eEA~~Al~~GaDiI-Dv----K~P~~--GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~ 76 (238)
T PRK02227 4 LVSVRNLEEALEALAGGADII-DV----KNPKE--GSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGA 76 (238)
T ss_pred eeccCCHHHHHHHHhcCCCEE-Ec----cCCCC--CCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHH
Confidence 445678999999999999988 77 55543 3322345888999998874 788764 322111 122334
Q ss_pred HHcCCCeeeec--CCCChhHHHHHH-------HhcCCCCcEEe----ecC-----CHHH-HHHHHHhCCCEEEEecCCCC
Q 037779 111 EAIGVDYVDES--EVLTPADEENHI-------NKHNFRVPFVC----GCR-----NLGE-SLRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 111 ~~aGad~v~~~--~~~~~~~~~~~~-------~~~~~~l~v~~----~v~-----t~~e-a~~a~~~Gad~I~v~g~~~~ 171 (310)
.+.|+|+|-+- ...+..+..+.+ +....+..++. +-+ ++.+ ...+.+.|++.+++.....+
T Consensus 77 a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kd 156 (238)
T PRK02227 77 AATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKD 156 (238)
T ss_pred HhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCC
Confidence 44899998621 122233333322 22223322222 211 2333 34566789988887633332
Q ss_pred CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779 172 GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V 251 (310)
+. +.+..++.+. -.+++....+. .+-+ -.+|-+ ..+|+..+..+++|-+.+
T Consensus 157 g~---------------~Lfd~l~~~~----------L~~Fv~~ar~~-Gl~~--gLAGSL-~~~dip~L~~l~pD~lGf 207 (238)
T PRK02227 157 GK---------------SLFDHMDEEE----------LAEFVAEARSH-GLMS--ALAGSL-KFEDIPALKRLGPDILGV 207 (238)
T ss_pred Cc---------------chHhhCCHHH----------HHHHHHHHHHc-ccHh--HhcccC-chhhHHHHHhcCCCEEEe
Confidence 21 0111111111 12233333332 2222 236888 489999999999999999
Q ss_pred ccccccCCCH-----HHHHHHHHHHHH
Q 037779 252 GSGVFKSGDP-----VRRARAIVQAVT 273 (310)
Q Consensus 252 Gsai~~~~dp-----~~~~~~~~~~~~ 273 (310)
=++++...|- .+.++++++.++
T Consensus 208 RgavC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 208 RGAVCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred chhccCCCCcccccCHHHHHHHHHHhh
Confidence 9999976631 234555555554
No 334
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.38 E-value=0.086 Score=52.67 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=77.7
Q ss_pred CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee--
Q 037779 44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE-- 120 (310)
Q Consensus 44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~-- 120 (310)
+.+.++.+.++|++.+ .+ |... |. ...-.+.++.+++.. ++|+++++.. +.+.+..+.++|||.|..
T Consensus 229 ~~e~a~~L~~agvdvi-vv-----D~a~--g~-~~~vl~~i~~i~~~~p~~~vi~g~v~-t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 229 NEERAEALVEAGVDVL-VV-----DTAH--GH-SEGVLDRVREIKAKYPDVQIIAGNVA-TAEAARALIEAGADAVKVGI 298 (486)
T ss_pred hHHHHHHHHHhCCCEE-EE-----ECCC--Cc-chhHHHHHHHHHhhCCCCCEEEeccC-CHHHHHHHHHcCCCEEEECC
Confidence 3689999999999976 33 2111 11 011267788888887 8999886544 446788999999999852
Q ss_pred -cC---------C--CChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779 121 -SE---------V--LTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 121 -~~---------~--~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
+. . .+....+..+.+ ...++++++ ++++..|+.+|+.+|||.+.+.
T Consensus 299 g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 299 GPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 10 0 112223333332 235689999 6999999999999999999875
No 335
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.37 E-value=0.051 Score=53.26 Aligned_cols=147 Identities=21% Similarity=0.274 Sum_probs=91.1
Q ss_pred HHHHHH-cCCcEEEecc-cccchh--hhcCCCCCCCChHHHHHHHhh----c-CcceEeeccccchHHHHHHHHcCCCee
Q 037779 48 ARIAEE-AGACAVMALE-RVPADI--RAQGGVARMSDPQLIKQIKSS----V-TIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 48 a~~~~~-~Ga~~I~~l~-~~~~d~--r~~~G~~~~~~~~~i~~i~~~----~-~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
|+.+.+ .-++.| +|| .||-|. +..+|+.++.++..+..+-+. + ++|+.+|.+.+..+.
T Consensus 338 aq~i~e~~~VDFI-DlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg------------ 404 (614)
T KOG2333|consen 338 AQVIAETCDVDFI-DLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEG------------ 404 (614)
T ss_pred HHHHHhhcceeee-eccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccC------------
Confidence 444443 334555 888 666654 444688888888877665433 2 479999988774321
Q ss_pred eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779 119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 198 (310)
+. -..+++..+. -+-|++.|.+||+.- ...|.
T Consensus 405 --~~--~a~~Li~~i~---------------------newg~savTlHGRSR-------------------qQRYT---- 436 (614)
T KOG2333|consen 405 --HP--VAHELIPRIV---------------------NEWGASAVTLHGRSR-------------------QQRYT---- 436 (614)
T ss_pred --ch--hHHHHHHHHh---------------------hccCcceEEecCchh-------------------hhhhh----
Confidence 00 0122222221 034778888887621 11121
Q ss_pred HHhhhccCCCcHHHHHHHHhc-CC-CCEEEEccCCCCCHHHHHHHH-HcC-CCEEEEccccccCCCHHHH
Q 037779 199 VFTFAKNIAAPYDLVMQTKQL-GR-LPVVHFAAGGVATPADAAMMM-QLG-CDGVFVGSGVFKSGDPVRR 264 (310)
Q Consensus 199 ~~~~~~~~~~~~~l~~~i~~~-~~-iPVv~ia~GGI~t~~di~~~~-~~G-adgV~VGsai~~~~dp~~~ 264 (310)
-.++|+.+.++.+. .+ +|+ |.+|.|.|.+|-++-+ +.+ .++||+|++-.-.+|++..
T Consensus 437 -------K~AnWdYi~e~a~~ak~~l~l--iGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtE 497 (614)
T KOG2333|consen 437 -------KSANWDYIEECADKAKSALPL--IGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTE 497 (614)
T ss_pred -------cccChHHHHHHHHhcccCcee--EecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhh
Confidence 13468888887764 33 888 6799999999965555 454 9999999977766776543
No 336
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.37 E-value=0.13 Score=48.70 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=76.0
Q ss_pred cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeec----CCHHHHHHHHHhCCCEEE
Q 037779 91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGC----RNLGESLRRIREGAAMIR 164 (310)
Q Consensus 91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v----~t~~ea~~a~~~Gad~I~ 164 (310)
.++|++.. +.+.....+..+..+|.=.++.. ..++++..+.+++....+.+.+.+ ++.+.+...++.|+++|.
T Consensus 33 l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~-~~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~ 111 (325)
T cd00381 33 LNIPLVSAPMDTVTESEMAIAMARLGGIGVIHR-NMSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIV 111 (325)
T ss_pred cCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeC-CCCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEE
Confidence 36788763 33444455566667887666533 345677666666522123333332 234456667788999988
Q ss_pred EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHH
Q 037779 165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~ 243 (310)
++.... + .....+.++.+++.. ++||+ .|.+.|++++..+.+
T Consensus 112 vd~~~G--~--------------------------------~~~~~~~i~~ik~~~p~v~Vi---~G~v~t~~~A~~l~~ 154 (325)
T cd00381 112 IDSAHG--H--------------------------------SVYVIEMIKFIKKKYPNVDVI---AGNVVTAEAARDLID 154 (325)
T ss_pred EECCCC--C--------------------------------cHHHHHHHHHHHHHCCCceEE---ECCCCCHHHHHHHHh
Confidence 752111 1 001245666666643 36774 389999999999999
Q ss_pred cCCCEEEEc
Q 037779 244 LGCDGVFVG 252 (310)
Q Consensus 244 ~GadgV~VG 252 (310)
+|+|+|.||
T Consensus 155 aGaD~I~vg 163 (325)
T cd00381 155 AGADGVKVG 163 (325)
T ss_pred cCCCEEEEC
Confidence 999999984
No 337
>PLN02979 glycolate oxidase
Probab=96.35 E-value=0.029 Score=53.62 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=64.5
Q ss_pred ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------CCC-ChhHHHHHHHh-cCCCCcEEee--cCC
Q 037779 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------EVL-TPADEENHINK-HNFRVPFVCG--CRN 148 (310)
Q Consensus 80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~~~-~~~~~~~~~~~-~~~~l~v~~~--v~t 148 (310)
+.++++.+|+..++||++|... +.+.++.+.++|+|+|..+ +.. +..+....+.+ .+..++++++ +++
T Consensus 211 tW~dl~wlr~~~~~PvivKgV~-~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~ 289 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGVL-TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRR 289 (366)
T ss_pred CHHHHHHHHhccCCCEEeecCC-CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCc
Confidence 4688999999999999999875 4578899999999998732 111 12333333433 2334677774 899
Q ss_pred HHHHHHHHHhCCCEEEEec
Q 037779 149 LGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 149 ~~ea~~a~~~Gad~I~v~g 167 (310)
..++.+++.+|||.+.+..
T Consensus 290 G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 290 GTDVFKALALGASGIFIGR 308 (366)
T ss_pred HHHHHHHHHcCCCEEEEcH
Confidence 9999999999999999863
No 338
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.34 E-value=0.21 Score=45.23 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=53.1
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--C-CCCC---hHHHHHHHhhcC-cceEeecccc---ch----HH
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--A-RMSD---PQLIKQIKSSVT-IPVMAKARIG---HF----VE 106 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~-~~~~---~~~i~~i~~~~~-lPv~~kd~i~---~~----~~ 106 (310)
.+-|+-.|+.++++|+++|..-- .-.....|. . ...- ...++.|++.+. +||++..-.+ .. .-
T Consensus 18 ~ayD~~sA~i~e~aG~dai~v~~---s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 18 TAYDYSMAKQFADAGLNVMLVGD---SQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred cCCCHHHHHHHHHcCCCEEEECh---HHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence 45677889999999999983221 000011111 0 1111 233456666664 7988853332 21 23
Q ss_pred HHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeec
Q 037779 107 AQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGC 146 (310)
Q Consensus 107 ~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v 146 (310)
+..+.++||+.|.+-+.....+.++.+... ++.++.-+
T Consensus 95 ~~~l~~aGa~gv~iED~~~~~~~i~ai~~a--~i~ViaRt 132 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGEWHIETLQMLTAA--AVPVIAHT 132 (240)
T ss_pred HHHHHHcCCcEEEEcCcHHHHHHHHHHHHc--CCeEEEEe
Confidence 566778999999854432222333444432 35555433
No 339
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.32 E-value=0.05 Score=54.19 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee---
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE--- 120 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~--- 120 (310)
.+.++.+.++|++.| .+ |..... + ..-.+.++.|++.. ++||++ +++.+.+.++.+.++|||+|-+
T Consensus 227 ~~ra~~Lv~aGVd~i-~~-----D~a~g~-~--~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 227 GGKAKALLDAGVDVL-VI-----DTAHGH-Q--VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred HHHHHHHHHhCCCEE-EE-----eCCCCC-c--HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCc
Confidence 588999999999998 33 332211 1 11256688888765 799988 4455668889999999999851
Q ss_pred ------cCCC---Chh------HHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEecC
Q 037779 121 ------SEVL---TPA------DEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTKGE 168 (310)
Q Consensus 121 ------~~~~---~~~------~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g~ 168 (310)
.... ..+ ++.+.++. .+++++++ +++..++.+|+.+||+.+++.+.
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~--~~~~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEARK--LGGHVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 1111 111 22222232 46888885 99999999999999999988643
No 340
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.30 E-value=0.021 Score=53.72 Aligned_cols=112 Identities=22% Similarity=0.197 Sum_probs=72.9
Q ss_pred EeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779 17 ETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM 96 (310)
Q Consensus 17 e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~ 96 (310)
+++++.|. ..|+.+++|.|+-......++++.++++|++.|.+..+.... .+.|. ..+++.++++++.+++||+
T Consensus 125 avr~~~~~--~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--~y~g~--~~~~~~i~~ik~~~~iPVi 198 (312)
T PRK10550 125 AMREAVPA--HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--GYRAE--HINWQAIGEIRQRLTIPVI 198 (312)
T ss_pred HHHHhcCC--CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--CCCCC--cccHHHHHHHHhhcCCcEE
Confidence 34444442 258899999886332222588999999999998543222211 12221 1257889999999999999
Q ss_pred eeccccchHHHHHHH-HcCCCeeeec-CCCChhHHHHHHH
Q 037779 97 AKARIGHFVEAQILE-AIGVDYVDES-EVLTPADEENHIN 134 (310)
Q Consensus 97 ~kd~i~~~~~~~~~~-~aGad~v~~~-~~~~~~~~~~~~~ 134 (310)
.+..+.+.++++.+. ..|+|.|-+. ..+..+.+.+.++
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~ 238 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVK 238 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhh
Confidence 999988777776655 5899999743 3333445544443
No 341
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.28 E-value=0.036 Score=49.98 Aligned_cols=82 Identities=24% Similarity=0.293 Sum_probs=60.6
Q ss_pred cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779 27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE 106 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~ 106 (310)
..|+..++|.|+- ....++++.++++|+++|+.- .. +.|. ..+.+.+++++ +++||+.+..+.+.++
T Consensus 139 ~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~------~~-~~g~--~ad~~~I~~i~--~~ipVIgnGgI~s~ed 205 (233)
T cd02911 139 GVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVD------AM-DPGN--HADLKKIRDIS--TELFIIGNNSVTTIES 205 (233)
T ss_pred CCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEEC------cC-CCCC--CCcHHHHHHhc--CCCEEEEECCcCCHHH
Confidence 4688899998854 233689999999999998542 11 1121 23466777776 7899999999988888
Q ss_pred HHHHHHcCCCeeeec
Q 037779 107 AQILEAIGVDYVDES 121 (310)
Q Consensus 107 ~~~~~~aGad~v~~~ 121 (310)
++.+...|||.|-+.
T Consensus 206 a~~~l~~GaD~VmiG 220 (233)
T cd02911 206 AKEMFSYGADMVSVA 220 (233)
T ss_pred HHHHHHcCCCEEEEc
Confidence 888888999999743
No 342
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.26 E-value=0.037 Score=53.03 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=64.4
Q ss_pred ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------C-CCChhHHHHHHHhcCCCCcEEee--cCCH
Q 037779 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------E-VLTPADEENHINKHNFRVPFVCG--CRNL 149 (310)
Q Consensus 80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~-~~~~~~~~~~~~~~~~~l~v~~~--v~t~ 149 (310)
..+.++.+++..+.|+++|+. .+.+.+..+.++|+|+|..+ + ..++.+....+.+. .+++++++ +++.
T Consensus 224 ~w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~-~~~~vi~dGGIr~g 301 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAA-TYKPVLIDSGIRRG 301 (361)
T ss_pred CHHHHHHHHHhCCCCEEEecC-CCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHH-hCCeEEEeCCCCCH
Confidence 356889999999999999974 46678899999999998732 1 11223334444332 34777775 8999
Q ss_pred HHHHHHHHhCCCEEEEecC
Q 037779 150 GESLRRIREGAAMIRTKGE 168 (310)
Q Consensus 150 ~ea~~a~~~Gad~I~v~g~ 168 (310)
.++.+++.+||+.+.+..+
T Consensus 302 ~Dv~KALaLGA~aV~iGr~ 320 (361)
T cd04736 302 SDIVKALALGANAVLLGRA 320 (361)
T ss_pred HHHHHHHHcCCCEEEECHH
Confidence 9999999999999998643
No 343
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.25 E-value=0.42 Score=44.05 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=53.9
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH-HHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ-LIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~-~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
....+|..++.+...|+|++ .+ |..+ |........ .++.++ ..+++.+++..-.+...++.+.++||++|
T Consensus 24 ~~~~sp~~~E~~a~~GfD~v-~i-----D~EH--g~~~~~~l~~~i~a~~-~~g~~~lVRvp~~~~~~i~r~LD~GA~GI 94 (267)
T PRK10128 24 LSSTTSYMAEIAATSGYDWL-LI-----DGEH--APNTIQDLYHQLQAIA-PYASQPVIRPVEGSKPLIKQVLDIGAQTL 94 (267)
T ss_pred ecCCCcHHHHHHHHcCCCEE-EE-----cccc--CCCCHHHHHHHHHHHH-hcCCCeEEECCCCCHHHHHHHhCCCCCee
Confidence 34556899999999999998 23 2211 111111111 222222 45566666544444567788999999999
Q ss_pred eecCCCChhHHHHHHHh
Q 037779 119 DESEVLTPADEENHINK 135 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~ 135 (310)
+.+..-+.++..+..+.
T Consensus 95 ivP~V~saeeA~~~V~a 111 (267)
T PRK10128 95 LIPMVDTAEQARQVVSA 111 (267)
T ss_pred EecCcCCHHHHHHHHHh
Confidence 98777677777766655
No 344
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.22 E-value=0.047 Score=52.76 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred CChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec--------CCCChhHHHHHHHh-cCCCCcEEee--cC
Q 037779 79 SDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES--------EVLTPADEENHINK-HNFRVPFVCG--CR 147 (310)
Q Consensus 79 ~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--------~~~~~~~~~~~~~~-~~~~l~v~~~--v~ 147 (310)
.+.+.++.+++.+++|+++|... +.+.++.+.++|+|+|..+ ...++.+.+..+.+ .+..++++++ +.
T Consensus 240 ~tW~~i~~lr~~~~~pvivKgV~-~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr 318 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLKGIL-HPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVR 318 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEecCC-CHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcC
Confidence 35688999999999999999654 4578889999999998732 11223344444443 2234777774 89
Q ss_pred CHHHHHHHHHhCCCEEEEe
Q 037779 148 NLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 148 t~~ea~~a~~~Gad~I~v~ 166 (310)
+..++.+++.+|||.+.+.
T Consensus 319 ~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 319 TGADIMKALALGAKAVLIG 337 (383)
T ss_pred cHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999985
No 345
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.19 E-value=0.25 Score=45.56 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=88.5
Q ss_pred eeecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHH
Q 037779 8 TVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQI 87 (310)
Q Consensus 8 ~~~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i 87 (310)
-..++--|-|+|++ +..|+.-+.+.|. ...++.+.++|++.| +- |+.. .+..++++.+
T Consensus 50 R~~~~~~I~~Ik~~----V~iPVIGi~K~~~------~~Ea~~L~eaGvDiI-Da----T~r~-------rP~~~~~~~i 107 (283)
T cd04727 50 RMADPKMIKEIMDA----VSIPVMAKVRIGH------FVEAQILEALGVDMI-DE----SEVL-------TPADEEHHID 107 (283)
T ss_pred ecCCHHHHHHHHHh----CCCCeEEeeehhH------HHHHHHHHHcCCCEE-ec----cCCC-------CcHHHHHHHH
Confidence 33344445555553 2456666666644 678999999999988 43 2210 1124678888
Q ss_pred HhhcCcceEeeccccchHHHHHHHHcCCCeeeecC-CCC-------------------------------------hhHH
Q 037779 88 KSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-VLT-------------------------------------PADE 129 (310)
Q Consensus 88 ~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-~~~-------------------------------------~~~~ 129 (310)
+..++.|+++. +.+.+++....+.|+|.|-.+- ..+ ..++
T Consensus 108 K~~~~~l~MAD--~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el 185 (283)
T cd04727 108 KHKFKVPFVCG--ARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL 185 (283)
T ss_pred HHHcCCcEEcc--CCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH
Confidence 88889999776 3355788888999999986221 111 2234
Q ss_pred HHHHHhcCCCCcEE--e--ecCCHHHHHHHHHhCCCEEEEec
Q 037779 130 ENHINKHNFRVPFV--C--GCRNLGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 130 ~~~~~~~~~~l~v~--~--~v~t~~ea~~a~~~Gad~I~v~g 167 (310)
++.+.+. ..++++ + +++|++++..+.+.|++.+.+..
T Consensus 186 Lk~l~~~-~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGS 226 (283)
T cd04727 186 VKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGS 226 (283)
T ss_pred HHHHHHh-cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 4444442 246664 3 47899999999999999988753
No 346
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.18 E-value=0.047 Score=49.37 Aligned_cols=79 Identities=29% Similarity=0.386 Sum_probs=59.8
Q ss_pred cCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779 35 RGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 35 ~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~ 111 (310)
+.|+.. .| .|+..++++++.|++.++-+. +. -..| .-..+++.++.+++..++||++..+|+..+++..+.
T Consensus 121 ~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg----~p-IGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am 194 (250)
T PRK00208 121 KEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLG----AP-IGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM 194 (250)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----cC-CCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH
Confidence 446543 34 458999999999999985331 11 0112 124468999999998899999999999888999999
Q ss_pred HcCCCeee
Q 037779 112 AIGVDYVD 119 (310)
Q Consensus 112 ~aGad~v~ 119 (310)
+.|+|.|+
T Consensus 195 elGAdgVl 202 (250)
T PRK00208 195 ELGADAVL 202 (250)
T ss_pred HcCCCEEE
Confidence 99999998
No 347
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.10 E-value=0.042 Score=53.07 Aligned_cols=87 Identities=20% Similarity=0.130 Sum_probs=63.8
Q ss_pred ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------C-CCChhHHHHHHHh-cCCCCcEEee--cCC
Q 037779 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------E-VLTPADEENHINK-HNFRVPFVCG--CRN 148 (310)
Q Consensus 80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~-~~~~~~~~~~~~~-~~~~l~v~~~--v~t 148 (310)
+.++|+.+++.+++|+++|... +.+.++.+.++|+|+|..+ + ..+..+....+.+ .+.+++++++ +++
T Consensus 233 tW~di~~lr~~~~~pvivKgV~-s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~ 311 (381)
T PRK11197 233 SWKDLEWIRDFWDGPMVIKGIL-DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRN 311 (381)
T ss_pred CHHHHHHHHHhCCCCEEEEecC-CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCc
Confidence 4567999999999999999875 4478889999999998722 1 1122233333332 3335777774 899
Q ss_pred HHHHHHHHHhCCCEEEEec
Q 037779 149 LGESLRRIREGAAMIRTKG 167 (310)
Q Consensus 149 ~~ea~~a~~~Gad~I~v~g 167 (310)
..++.+++.+||+.+.+..
T Consensus 312 g~Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 312 GLDVVRMIALGADTVLLGR 330 (381)
T ss_pred HHHHHHHHHcCcCceeEhH
Confidence 9999999999999999863
No 348
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=96.10 E-value=0.028 Score=50.26 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=74.4
Q ss_pred hHHHHHHHhcCCCCcEEeecCCHH----HHHH------HHHhCCCEEEEecCCCCCchHHHHHHHHHhh-cc-ee--ccc
Q 037779 127 ADEENHINKHNFRVPFVCGCRNLG----ESLR------RIREGAAMIRTKGEAGTGNIVEAVRHVRSVM-GD-IR--VLR 192 (310)
Q Consensus 127 ~~~~~~~~~~~~~l~v~~~v~t~~----ea~~------a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~-~~-~~--~l~ 192 (310)
.++++.+++.+ .+++++.+..+ +... ..+.|+|++.+++..+...+..+++.+++.. .. +. .++
T Consensus 45 ~~~i~~l~~~~--~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~G~~tl~~~~~~a~~~~~~~~~~v~~~s 122 (226)
T PF00215_consen 45 PEIIEELKERG--KPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFAGDDTLEAAVKAAKKHGRKGVFVVDLLS 122 (226)
T ss_dssp HHHHHHHHHTT--SEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTTHHHHHHHHHHHHHHTTESEEEEEESTT
T ss_pred HHHHHHHHHhc--CCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEeccCCHHHHHHHHHHHhccCCcceEEEEecC
Confidence 45566666543 78888865542 2222 3578999999997766556677777777775 22 22 222
Q ss_pred ccCchhHHh-----------h----h-c----cC--CCcHHHHHHH-Hhc----C--CC-CEEEEccCCCCCHHHHHHHH
Q 037779 193 NMDDDEVFT-----------F----A-K----NI--AAPYDLVMQT-KQL----G--RL-PVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 193 ~~~~d~~~~-----------~----~-~----~~--~~~~~l~~~i-~~~----~--~i-PVv~ia~GGI~t~~di~~~~ 242 (310)
..+.....+ . . . +. +.....++.. .+. + +. +. -.+||+. .....+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~G~v~~~~~~~~~~~~~~~~~l~PGi~~~~~--~~~~~~~-~~~~~~~~ 199 (226)
T PF00215_consen 123 NPDSEDLQDLGLGVDQEIVHRAADLAAKAGVDGIVCSATEPAIRKAGPNFKILTPGIGAIQG--AVAGGQK-RATTPAAA 199 (226)
T ss_dssp STTHHHHHHHHCTHHHHHHHHHHHHHHHTTEEEEEETTTCHHHHHHTTTSEEEEESBSSSTC--EECSSHH-CHHHHHHH
T ss_pred CCCHHHHHhhhcccHHHHHHHHHHhhccccccCcccccccccccccccchhhccCCCCcccc--cCccccc-ccccHHHH
Confidence 222111111 0 0 0 00 0000011111 110 0 11 12 1345653 44455555
Q ss_pred H-cCCCEEEEccccccCCCHHHHHHHH
Q 037779 243 Q-LGCDGVFVGSGVFKSGDPVRRARAI 268 (310)
Q Consensus 243 ~-~GadgV~VGsai~~~~dp~~~~~~~ 268 (310)
. .|+|-++||++|++++||.+.++++
T Consensus 200 ~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 200 KQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp HHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred HhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 4 7999999999999999999988764
No 349
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.09 E-value=0.064 Score=48.63 Aligned_cols=80 Identities=25% Similarity=0.337 Sum_probs=62.4
Q ss_pred eecCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCChHHHHHHHhhcCcceEeeccccchHHHH
Q 037779 33 MLRGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVA-RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 33 ~l~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~ 108 (310)
+.+.|+.. ++ .|+-.++++++.|+.+++-+. .+ - |+. =+.|+..++.|++..++||++...|+..+++.
T Consensus 133 Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlg----sP--I-GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~ 205 (267)
T CHL00162 133 LVKKGFTVLPYINADPMLAKHLEDIGCATVMPLG----SP--I-GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHCCCEEeecCCCCHHHHHHHHHcCCeEEeecc----Cc--c-cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHH
Confidence 34666643 33 348899999999999997662 11 1 221 25679999999999999999999999888888
Q ss_pred HHHHcCCCeee
Q 037779 109 ILEAIGVDYVD 119 (310)
Q Consensus 109 ~~~~aGad~v~ 119 (310)
.+.+.|+|+|+
T Consensus 206 ~AmElGaDgVL 216 (267)
T CHL00162 206 QAMELGASGVL 216 (267)
T ss_pred HHHHcCCCEEe
Confidence 99999999998
No 350
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.04 E-value=1.3 Score=41.52 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=103.1
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
+.+++++.+...|.++- +...+ +.|... -...++.+.+... +||.++ |.-.+++.+..+.++|-+.|-.+ +.
T Consensus 33 vi~AAe~~~sPvIlq~s--~~~~~-~~g~~~--~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~ 107 (307)
T PRK05835 33 IFEAGNEENSPLFIQAS--EGAIK-YMGIDM--AVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASH 107 (307)
T ss_pred HHHHHHHHCCCEEEEcC--ccHHh-hCChHH--HHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 46777777888775551 11111 122100 0224445555664 999887 33335678888899999998632 22
Q ss_pred CChh-------HHHHHHHhcCCCCc----EE---------ee----cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779 124 LTPA-------DEENHINKHNFRVP----FV---------CG----CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA 177 (310)
Q Consensus 124 ~~~~-------~~~~~~~~~~~~l~----v~---------~~----v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~ 177 (310)
++.+ ++++..+..+..+. .+ .+ .++++|+.+-. +.|+|++.+. |..++-
T Consensus 108 l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~----- 182 (307)
T PRK05835 108 HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA----- 182 (307)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccc-----
Confidence 3333 33333333332110 00 00 34577777665 4688888764 433221
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH---------------------
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA--------------------- 236 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~--------------------- 236 (310)
++... ...-++++++.+.+..++|+|+=-++||. .+
T Consensus 183 -------------Yk~~~---------~p~L~f~~L~~I~~~~~iPLVLHGgSGip-~e~~~~~~~~g~~~~~~~g~~~e 239 (307)
T PRK05835 183 -------------FKFKG---------EPKLDFERLQEVKRLTNIPLVLHGASAIP-DDVRKSYLDAGGDLKGSKGVPFE 239 (307)
T ss_pred -------------cCCCC---------CCccCHHHHHHHHHHhCCCEEEeCCCCCc-hHHhhhhhhhccccccccCCCHH
Confidence 11000 01226888999988888999765455553 22
Q ss_pred HHHHHHHcCCCEEEEcccccc
Q 037779 237 DAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 237 di~~~~~~GadgV~VGsai~~ 257 (310)
+++++.++|..-|=++|.+..
T Consensus 240 ~~~kai~~GI~KiNi~T~l~~ 260 (307)
T PRK05835 240 FLQESVKGGINKVNTDTDLRI 260 (307)
T ss_pred HHHHHHHcCceEEEeChHHHH
Confidence 899999999999999998865
No 351
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=96.04 E-value=1 Score=40.25 Aligned_cols=192 Identities=15% Similarity=0.109 Sum_probs=108.1
Q ss_pred cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeeccccc----hHHHHHHHHc
Q 037779 41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIGH----FVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~~----~~~~~~~~~a 113 (310)
+..+.+..+.+.+.| .+++. =| |+=.+ +.|. ...+.++++++..+ -|+.+...-.+ .+++..+.+.
T Consensus 6 DtA~~~~i~~~~~~~~i~GvT-TN--Psll~-k~g~---~~~~~~~~i~~~~~~~~~v~~Qv~~~d~e~mi~ea~~l~~~ 78 (220)
T PRK12653 6 DTSDVVAVKALSRIFPLAGVT-TN--PSIIA-AGKK---PLEVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSI 78 (220)
T ss_pred ecCCHHHHHHHHhCCCccEEe-CC--HHHHH-hcCC---CHHHHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHHHh
Confidence 445677777777765 46652 12 23222 2222 23566788887763 36665543322 2455566666
Q ss_pred CCCeee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceec
Q 037779 114 GVDYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~ 190 (310)
+-+.++ ++....--...+.+++. |+.+.+ -+.|+.++..+..+||+||.+. |+..
T Consensus 79 ~~ni~IKIP~T~~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~-------------------- 136 (220)
T PRK12653 79 IADIVVKVPVTAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRID-------------------- 136 (220)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEeecChHh--------------------
Confidence 656554 55432223455556554 444443 3789999999999999999875 4311
Q ss_pred ccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHH
Q 037779 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRA 265 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~ 265 (310)
....|++ ..-.++.+.+... .+.-| + ...+.+++++.+++.+|+|.+-+.-.+++ .+.....+
T Consensus 137 --~~g~dg~-------~~i~~i~~~~~~~~~~tkI--L-aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~ 204 (220)
T PRK12653 137 --AQGGSGI-------QTVTDLQQLLKMHAPQAKV--L-AASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAV 204 (220)
T ss_pred --hcCCChH-------HHHHHHHHHHHhcCCCcEE--E-EEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHH
Confidence 0011111 0012222222221 12333 2 46778999999999999999999876655 34445566
Q ss_pred HHHHHHHH
Q 037779 266 RAIVQAVT 273 (310)
Q Consensus 266 ~~~~~~~~ 273 (310)
+.|.+-++
T Consensus 205 ~~F~~dw~ 212 (220)
T PRK12653 205 AKFEQDWQ 212 (220)
T ss_pred HHHHHHHH
Confidence 66666554
No 352
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.04 E-value=0.079 Score=48.07 Aligned_cols=37 Identities=30% Similarity=0.572 Sum_probs=31.4
Q ss_pred CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCC
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~d 260 (310)
.+|| +..|+|+ ++|+.++++.+ +||++||++-.+.++
T Consensus 199 ~~~I--lYGGSV~-~~N~~~l~~~~~vDG~LVG~Asl~~~~ 236 (242)
T cd00311 199 KVRI--LYGGSVN-PENAAELLAQPDIDGVLVGGASLKAES 236 (242)
T ss_pred ceeE--EECCCCC-HHHHHHHhcCCCCCEEEeehHhhCHHH
Confidence 4788 6799994 79999999987 999999999997443
No 353
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.99 E-value=0.05 Score=48.78 Aligned_cols=81 Identities=27% Similarity=0.406 Sum_probs=55.3
Q ss_pred eecCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHH
Q 037779 33 MLRGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 33 ~l~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~ 109 (310)
+.+.|+.. ++ .|+-.++++++.|+.+++-+. .-+-.. .=+.++..++.+++..++||++..++|...++..
T Consensus 119 Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlg---sPIGSg---~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~ 192 (247)
T PF05690_consen 119 LVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLG---SPIGSG---RGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQ 192 (247)
T ss_dssp HHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBS---SSTTT------SSTHHHHHHHHHHGSSSBEEES---SHHHHHH
T ss_pred HHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecc---cccccC---cCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 33556643 33 348899999999999997662 001111 1256789999999999999999999998888888
Q ss_pred HHHcCCCeee
Q 037779 110 LEAIGVDYVD 119 (310)
Q Consensus 110 ~~~aGad~v~ 119 (310)
+.+.|+|.|+
T Consensus 193 AMElG~daVL 202 (247)
T PF05690_consen 193 AMELGADAVL 202 (247)
T ss_dssp HHHTT-SEEE
T ss_pred HHHcCCceee
Confidence 9999999998
No 354
>PRK14567 triosephosphate isomerase; Provisional
Probab=95.98 E-value=0.18 Score=46.05 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=35.1
Q ss_pred CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~ 266 (310)
+++| +..|+| +++++.++++.+ .||++||++-.+++++.+.++
T Consensus 202 ~v~I--lYGGSV-~~~N~~~l~~~~diDG~LVGgasL~~~~F~~Ii~ 245 (253)
T PRK14567 202 NIKI--VYGGSL-KAENAKDILSLPDVDGGLIGGASLKAAEFNEIIN 245 (253)
T ss_pred cceE--EEcCcC-CHHHHHHHHcCCCCCEEEeehhhhcHHHHHHHHH
Confidence 4788 579999 799999999886 999999999998665554443
No 355
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.96 E-value=1 Score=40.26 Aligned_cols=116 Identities=23% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee------ccccc-------hHHHHH
Q 037779 43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK------ARIGH-------FVEAQI 109 (310)
Q Consensus 43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k------d~i~~-------~~~~~~ 109 (310)
.+++-+..+.++||+.| -| .+--.-+|- -+++-.++++++..++|+... ||+-+ .+++..
T Consensus 9 en~~~l~~A~~~GAdRi-EL----C~~La~GG~--TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~ 81 (241)
T COG3142 9 ENVEGLLAAQAAGADRI-EL----CDALAEGGL--TPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRL 81 (241)
T ss_pred cCHhhHHHHHHcCCcee-eh----hhccccCCC--CCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHH
Confidence 45788999999999998 44 111122343 456889999999899998763 34322 135566
Q ss_pred HHHcCCCeee-e--c-CC-CChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEe
Q 037779 110 LEAIGVDYVD-E--S-EV-LTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTK 166 (310)
Q Consensus 110 ~~~aGad~v~-~--~-~~-~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~ 166 (310)
+.++|++.|. . + +. +..+.+.+.+... -++.+.. .+.++.++. ..+++|+.=|-++
T Consensus 82 ~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA-~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs 148 (241)
T COG3142 82 ARELGVQGVVLGALTADGNIDMPRLEKLIEAA-GGLGVTFHRAFDECPDPLEALEQLIELGVERILTS 148 (241)
T ss_pred HHHcCCCcEEEeeecCCCccCHHHHHHHHHHc-cCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence 7779999987 2 2 22 2333444444332 2343322 244555543 4567777555444
No 356
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.04 Score=52.12 Aligned_cols=95 Identities=31% Similarity=0.309 Sum_probs=69.5
Q ss_pred eccCCCccccccceeeecCCccccC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cce
Q 037779 18 TTKKSPFSVKVGLAQMLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPV 95 (310)
Q Consensus 18 ~k~~sp~~~~~~~~~~l~~g~i~~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv 95 (310)
++.+.+ +.|++++.|.|+-... ...+.++.++++|++++.+.-+.... .+.| ..+.+.|+++++.+. +||
T Consensus 130 ~~~av~---~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~--~y~~---~ad~~~I~~vk~~~~~ipv 201 (323)
T COG0042 130 MVEAVG---DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQ--GYLG---PADWDYIKELKEAVPSIPV 201 (323)
T ss_pred HHHhhC---CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHh--cCCC---ccCHHHHHHHHHhCCCCeE
Confidence 344444 4789999999996655 34689999999999998544222211 1112 256899999999988 999
Q ss_pred EeeccccchHHHHHHHH-cCCCeeee
Q 037779 96 MAKARIGHFVEAQILEA-IGVDYVDE 120 (310)
Q Consensus 96 ~~kd~i~~~~~~~~~~~-aGad~v~~ 120 (310)
+.+..+.+.++++.+.+ .|+|+|-+
T Consensus 202 i~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 202 IANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred EeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 99998887777765555 78999873
No 357
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.91 E-value=0.56 Score=41.45 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=73.4
Q ss_pred cceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCC-CCcEEee-cCCHHHHHHHHHhCCCEEEEecC
Q 037779 93 IPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNF-RVPFVCG-CRNLGESLRRIREGAAMIRTKGE 168 (310)
Q Consensus 93 lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~-~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~ 168 (310)
+||+...-... ...++.+.+.|+..+-.+ ......+.++.+.++.. .+.+.++ +-+.+++..+.++|++++..-+.
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~ 92 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT 92 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC
Confidence 56655433221 234577788999988644 22233445555655333 4677775 78899999999999999875210
Q ss_pred CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCE
Q 037779 169 AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gadg 248 (310)
+.++.+.... ..+|++ =|.+|++++.++.++|+|-
T Consensus 93 ----------------------------------------~~~v~~~~~~-~~~~~~----~G~~t~~E~~~A~~~Gad~ 127 (206)
T PRK09140 93 ----------------------------------------DPEVIRRAVA-LGMVVM----PGVATPTEAFAALRAGAQA 127 (206)
T ss_pred ----------------------------------------CHHHHHHHHH-CCCcEE----cccCCHHHHHHHHHcCCCE
Confidence 1233333332 345663 3478999999999999999
Q ss_pred EEE
Q 037779 249 VFV 251 (310)
Q Consensus 249 V~V 251 (310)
+.+
T Consensus 128 vk~ 130 (206)
T PRK09140 128 LKL 130 (206)
T ss_pred EEE
Confidence 985
No 358
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.90 E-value=1.3 Score=40.52 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=59.3
Q ss_pred ceeeecCCc-----cccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHH---HhhcCcceEeeccc
Q 037779 30 LAQMLRGGV-----IMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQI---KSSVTIPVMAKARI 101 (310)
Q Consensus 30 ~~~~l~~g~-----i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i---~~~~~lPv~~kd~i 101 (310)
+.++|+.|. .....+|..++.+...|.|++ .+ |..+ |.. +.+.+..+ .+..+++.+++..-
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v-~i-----D~EH--g~~---~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGLAGFDWL-VL-----DGEH--APN---DVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEE-EE-----cccc--CCC---CHHHHHHHHHHHhhcCCCcEEECCC
Confidence 445554443 334556899999999999997 33 2222 221 13333333 23456676666544
Q ss_pred cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779 102 GHFVEAQILEAIGVDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 102 ~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~ 135 (310)
.+...++.+.++||+.|..+...+.++..+..+.
T Consensus 79 ~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 79 NEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred CCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 4556778888999999997777677776665543
No 359
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=95.85 E-value=1.3 Score=39.68 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=109.0
Q ss_pred cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHc
Q 037779 41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~a 113 (310)
+..+.+..+.+.+.| .+++. = .|+=.+ +.|. ...+.+++|++.. .-|+.+...-.+ .+++..+.+.
T Consensus 6 DtA~~~~i~~~~~~~~i~GvT-T--NPsll~-k~g~---~~~~~~~~i~~~~~~~~~v~~qv~~~d~e~mi~eA~~l~~~ 78 (220)
T PRK12655 6 DTANVAEVERLARIFPIAGVT-T--NPSIIA-ASKE---SIWEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLRNA 78 (220)
T ss_pred ecCCHHHHHHHHhCCCccEEe-C--CHHHHH-hcCC---CHHHHHHHHHHHhCCCCCEEEEEeeCCHHHHHHHHHHHHHh
Confidence 445667777777765 46652 1 223222 2222 2356778888765 346665543322 2455566666
Q ss_pred CCCeee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceec
Q 037779 114 GVDYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~ 190 (310)
+-+.++ ++....--...+.+++. |+.+.+ -+.|+.++..+..+||+||.+. |+..
T Consensus 79 ~~nv~IKIP~T~~Gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~-------------------- 136 (220)
T PRK12655 79 IPGIVVKIPVTAEGLAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVD-------------------- 136 (220)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEEEeecchHh--------------------
Confidence 655544 55432223455555554 444444 3789999999999999999875 4311
Q ss_pred ccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHH
Q 037779 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRA 265 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~ 265 (310)
....|++ ..-.++...+... .+.-| + ...+.+++++.+++..|+|.+-+.-.+++ .+-....+
T Consensus 137 --~~g~dg~-------~~i~~~~~~~~~~~~~tkI--L-aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~ 204 (220)
T PRK12655 137 --AQGGDGI-------RMVQELQTLLEMHAPESMV--L-AASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAI 204 (220)
T ss_pred --HcCCCHH-------HHHHHHHHHHHhcCCCcEE--E-EEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHH
Confidence 0011111 0012222222222 22334 2 46778999999999999999999886665 44445666
Q ss_pred HHHHHHHHc
Q 037779 266 RAIVQAVTN 274 (310)
Q Consensus 266 ~~~~~~~~~ 274 (310)
+.|.+.++.
T Consensus 205 ~~F~~dw~~ 213 (220)
T PRK12655 205 EKFEQDWQA 213 (220)
T ss_pred HHHHHHHHH
Confidence 777666553
No 360
>PTZ00333 triosephosphate isomerase; Provisional
Probab=95.84 E-value=0.26 Score=45.04 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHH
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRR 264 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~ 264 (310)
++|| +..|+| +++++.+++. .+.||++||++-+. +++.+.
T Consensus 207 ~~~I--LYGGSV-~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~I 247 (255)
T PTZ00333 207 ATRI--IYGGSV-NEKNCKELIKQPDIDGFLVGGASLK-PDFVDI 247 (255)
T ss_pred cceE--EEcCCC-CHHHHHHHhcCCCCCEEEEehHhhh-hhHHHH
Confidence 4788 679999 5899988875 69999999999987 344433
No 361
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=95.83 E-value=0.082 Score=49.56 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=30.7
Q ss_pred EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
+.++++||| +++++.++.++|+|.+.||+.++..+
T Consensus 246 ~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~~~ 280 (302)
T cd01571 246 VKIFVSGGL-DEEDIKELEDVGVDAFGVGTAISKAP 280 (302)
T ss_pred eEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCCC
Confidence 444789999 69999999999999999999998753
No 362
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=95.80 E-value=1.6 Score=40.44 Aligned_cols=196 Identities=15% Similarity=0.197 Sum_probs=113.7
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
..+++.+..+..|.+. -+.-.++.+|.. .-...++.+.+.+++||..+ |.-.+++.+..+..+|-..+-++ +.+
T Consensus 34 ileaA~e~~sPvIiq~--S~g~~~y~gg~~--~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~ 109 (286)
T COG0191 34 ILEAAEEEKSPVIIQF--SEGAAKYAGGAD--SLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHL 109 (286)
T ss_pred HHHHHHHhCCCEEEEe--cccHHHHhchHH--HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcC
Confidence 3556666677776544 111122223321 11345566677788999987 33335677778888998887532 122
Q ss_pred Chh-------HHHHHHHhcCCCCcEEee-------------------cCCHHHHHHHHHh-CCCEEEEe-cCCCCCchHH
Q 037779 125 TPA-------DEENHINKHNFRVPFVCG-------------------CRNLGESLRRIRE-GAAMIRTK-GEAGTGNIVE 176 (310)
Q Consensus 125 ~~~-------~~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~~~-Gad~I~v~-g~~~~~~~~~ 176 (310)
+.+ ++++.+.+. ++.+=++ ..+++|++...+. |.|.+.+. |..++.
T Consensus 110 ~~eENi~~tkevv~~ah~~--gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~---- 183 (286)
T COG0191 110 PFEENIAITKEVVEFAHAY--GVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGV---- 183 (286)
T ss_pred CHHHHHHHHHHHHHHHHHc--CCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccC----
Confidence 222 333333332 2222111 2356666665543 57877653 332221
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
++. . ...-+++.++.+.+..++|+|.=-++|| +.+++++.+++|..-|=+.|-+-
T Consensus 184 --------------Yk~--~--------~p~L~~~~L~~i~~~~~~PlVlHGgSGi-p~~eI~~aI~~GV~KvNi~Td~~ 238 (286)
T COG0191 184 --------------YKP--G--------NPKLDFDRLKEIQEAVSLPLVLHGGSGI-PDEEIREAIKLGVAKVNIDTDLQ 238 (286)
T ss_pred --------------CCC--C--------CCCCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHhCceEEeeCcHHH
Confidence 010 0 0122578889999888899887777788 58999999999999999998654
Q ss_pred cCCCHHHHHHHHHHHHHcC---CChhhHH
Q 037779 257 KSGDPVRRARAIVQAVTNY---SDPDVLA 282 (310)
Q Consensus 257 ~~~dp~~~~~~~~~~~~~~---~~~~~~~ 282 (310)
. ..+..+++.+.++ -||+++.
T Consensus 239 ~-----A~~~avr~~~~~~~k~~DpR~~l 262 (286)
T COG0191 239 L-----AFTAAVREYLAENPKEYDPRKYL 262 (286)
T ss_pred H-----HHHHHHHHHHHhCcccCCHHHHH
Confidence 4 3444455544444 4676663
No 363
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.79 E-value=0.067 Score=47.37 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=42.5
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~ 272 (310)
..+.++.+++..++||+ .-++|.+++++..++++|||+|.++...... ..++++.+..
T Consensus 60 ~~~~~~~i~~~v~iPi~--~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~----~~~~~~~~~~ 117 (217)
T cd00331 60 SLEDLRAVREAVSLPVL--RKDFIIDPYQIYEARAAGADAVLLIVAALDD----EQLKELYELA 117 (217)
T ss_pred CHHHHHHHHHhcCCCEE--ECCeecCHHHHHHHHHcCCCEEEEeeccCCH----HHHHHHHHHH
Confidence 34566666666689995 4677778889999999999999999987652 4445554443
No 364
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.77 E-value=0.061 Score=50.68 Aligned_cols=101 Identities=29% Similarity=0.261 Sum_probs=67.4
Q ss_pred ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779 28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE 106 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~ 106 (310)
.|+..++|.|+-....+ .+.++.++++|+++|.+-.+.+. . .+.| ..+.+.++++++.+++||+.+..+.+.++
T Consensus 132 ~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~-~-~~~~---~~~~~~i~~i~~~~~ipvi~nGgI~~~~d 206 (319)
T TIGR00737 132 IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRA-Q-GYSG---EANWDIIARVKQAVRIPVIGNGDIFSPED 206 (319)
T ss_pred CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccc-c-cCCC---chhHHHHHHHHHcCCCcEEEeCCCCCHHH
Confidence 57888888876433223 47899999999999843212111 1 1111 23578899999999999999999987778
Q ss_pred HHHHH-HcCCCeeeec-CCCChhHHHHHH
Q 037779 107 AQILE-AIGVDYVDES-EVLTPADEENHI 133 (310)
Q Consensus 107 ~~~~~-~aGad~v~~~-~~~~~~~~~~~~ 133 (310)
++.+. ..|||.|.+. ..+..+.+...+
T Consensus 207 a~~~l~~~gad~VmigR~~l~~P~l~~~~ 235 (319)
T TIGR00737 207 AKAMLETTGCDGVMIGRGALGNPWLFRQI 235 (319)
T ss_pred HHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence 87666 5899999743 333333344444
No 365
>PLN02429 triosephosphate isomerase
Probab=95.68 E-value=0.17 Score=47.61 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=34.1
Q ss_pred CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~ 266 (310)
+++| +..|+| +++++.+++. .++||++||++..+++++...++
T Consensus 263 ~irI--LYGGSV-~~~N~~el~~~~diDG~LVGgASL~~~~F~~Ii~ 306 (315)
T PLN02429 263 KTRI--IYGGSV-NGGNSAELAKEEDIDGFLVGGASLKGPEFATIVN 306 (315)
T ss_pred CceE--EEcCcc-CHHHHHHHhcCCCCCEEEeecceecHHHHHHHHH
Confidence 4677 679999 5888888774 69999999999998666555443
No 366
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=95.68 E-value=1.5 Score=39.94 Aligned_cols=88 Identities=15% Similarity=0.027 Sum_probs=55.8
Q ss_pred CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeeccccchHHHHHHHHc
Q 037779 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKARIGHFVEAQILEAI 113 (310)
Q Consensus 37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~i~~~~~~~~~~~a 113 (310)
|......+|..++.+...|.|++ .+ |..+ |.. +.+.+..+. +..+++.+++..-.+...++.+.++
T Consensus 15 G~~~~~~sp~~~e~~a~~G~D~v-~i-----D~EH--g~~---~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~ 83 (249)
T TIGR03239 15 GCWSALGNPITTEVLGLAGFDWL-LL-----DGEH--APN---DVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDI 83 (249)
T ss_pred EEEEcCCCcHHHHHHHhcCCCEE-EE-----eccc--CCC---CHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcC
Confidence 33445566899999999999997 33 2211 211 133443332 3356666666544555677888999
Q ss_pred CCCeeeecCCCChhHHHHHHHh
Q 037779 114 GVDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 114 Gad~v~~~~~~~~~~~~~~~~~ 135 (310)
||+.|..+...+.++..+..+.
T Consensus 84 Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 84 GFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred CCCEEEecCcCCHHHHHHHHHH
Confidence 9999987766667766665543
No 367
>PRK12376 putative translaldolase; Provisional
Probab=95.67 E-value=1.6 Score=39.50 Aligned_cols=173 Identities=15% Similarity=0.150 Sum_probs=98.4
Q ss_pred cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccc----hHHHHHHHHcC
Q 037779 41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGH----FVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~----~~~~~~~~~aG 114 (310)
+..+.+..+.+.+.| .+++- =| |+-.+ +.|. ..-.+.+++|++.. +-||.+...-.+ .+++..+.+.+
T Consensus 11 DtAd~~eik~~~~~g~i~GVT-TN--Psll~-k~g~--~~~~~~~~~i~~~~~~~~vs~EV~~~d~~~mv~eA~~l~~~~ 84 (236)
T PRK12376 11 DGADLEEMLAAYKNPLVKGFT-TN--PSLMR-KAGV--TDYKAFAKEVLAEIPDAPISFEVFADDLETMEKEAEKIASLG 84 (236)
T ss_pred ecCCHHHHHHHHhCCCeeEEE-CC--HHHHH-hcCC--CCHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHHHhC
Confidence 456778888888877 46662 22 23222 2221 11245677888777 357776543332 24556666676
Q ss_pred CCeee-ecCCC----ChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHh----CCCEEEEe-cCCCCCchHHHHHHHHH
Q 037779 115 VDYVD-ESEVL----TPADEENHINKHNFRVPFVCG-CRNLGESLRRIRE----GAAMIRTK-GEAGTGNIVEAVRHVRS 183 (310)
Q Consensus 115 ad~v~-~~~~~----~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~----Gad~I~v~-g~~~~~~~~~~~~~~~~ 183 (310)
-+.++ ++... .--..++.+.+.+ +.+-+. +.|+.++..+.++ |++|+.+. |+...
T Consensus 85 ~nv~VKIP~T~~~G~~gl~Ai~~L~~~G--I~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~dd------------ 150 (236)
T PRK12376 85 ENVYVKIPITNTKGESTIPLIKKLSADG--VKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIAD------------ 150 (236)
T ss_pred CCeEEEECCcCccchhHHHHHHHHHHCC--CeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhhh------------
Confidence 55554 54321 1134455555544 443332 6788888654443 59999876 44211
Q ss_pred hhcceecccccCchhHHhhhccCCCcHHHHHHHH----hcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 184 VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK----QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 184 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~----~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
...| +..+++.+. ...+.-|+ ..-+.++.++.++..+|||.+-+.-.+++
T Consensus 151 ----------~g~D-----------~~~~i~~i~~i~~~~~~tkIL---aASiR~~~~v~~a~~~Gad~vTvp~~v~~ 204 (236)
T PRK12376 151 ----------TGVD-----------PVPLMKEALAICHSKPGVELL---WASPREVYNIIQADQLGCDIITVTPDVLK 204 (236)
T ss_pred ----------cCCC-----------cHHHHHHHHHHHHhCCCcEEE---EEecCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 0111 223333332 22233443 47789999999999999999999876655
No 368
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.65 E-value=0.064 Score=46.19 Aligned_cols=127 Identities=15% Similarity=0.231 Sum_probs=67.0
Q ss_pred hHHHHHHHhhcCcceEe-ecccc----chHHHHHHHHcC-CCeeeecCCCChhHHHHHHHhcCCC---CcEEeecCCHHH
Q 037779 81 PQLIKQIKSSVTIPVMA-KARIG----HFVEAQILEAIG-VDYVDESEVLTPADEENHINKHNFR---VPFVCGCRNLGE 151 (310)
Q Consensus 81 ~~~i~~i~~~~~lPv~~-kd~i~----~~~~~~~~~~aG-ad~v~~~~~~~~~~~~~~~~~~~~~---l~v~~~v~t~~e 151 (310)
.+.++.++++ +..+++ -|.+. +..-++-+...+ +|+|+.+ -..+++..++.+.- -.++.+..+.+-
T Consensus 34 ~~~v~~~~~~-gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST----k~~~i~~Ak~~gl~tIqRiFliDS~al~~ 108 (175)
T PF04309_consen 34 KDIVKRLKAA-GKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST----KSNLIKRAKKLGLLTIQRIFLIDSSALET 108 (175)
T ss_dssp HHHHHHHHHT-T-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES----SHHHHHHHHHTT-EEEEEEE-SSHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC----CHHHHHHHHHcCCEEEEEeeeecHHHHHH
Confidence 4556666554 444444 34442 222334455544 8888643 34556666654321 123334444443
Q ss_pred HHHHH-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC
Q 037779 152 SLRRI-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 152 a~~a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G 230 (310)
..+.. +..+|+|=+. |. .-...++.+++..++|+ ||+|
T Consensus 109 ~~~~i~~~~PD~vEil-------------------------Pg--------------~~p~vi~~i~~~~~~Pi--IAGG 147 (175)
T PF04309_consen 109 GIKQIEQSKPDAVEIL-------------------------PG--------------VMPKVIKKIREETNIPI--IAGG 147 (175)
T ss_dssp HHHHHHHHT-SEEEEE-------------------------SC--------------CHHHHHCCCCCCCSS-E--EEES
T ss_pred HHHHHhhcCCCEEEEc-------------------------hH--------------HHHHHHHHHHHhcCCCE--Eeec
Confidence 33333 4566666553 11 11235555666667899 7788
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcc
Q 037779 231 GVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 231 GI~t~~di~~~~~~GadgV~VGs 253 (310)
=|.+.+++.+++++||.+|...+
T Consensus 148 LI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 148 LIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp S--SHHHHHHHCCTTCEEEEE--
T ss_pred ccCCHHHHHHHHHcCCEEEEcCC
Confidence 89999999999999999998765
No 369
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.52 Score=43.07 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCcEEEecccc-cchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779 46 EQARIAEEAGACAVMALERV-PADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~-~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~ 123 (310)
+.|+...++|++.+---.+. .|.+-.|+|-. ..-+..++++++.+++|++--.+ +..+++...++ +|.+- +...
T Consensus 63 ~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlg-e~gL~~l~~a~~~~Gl~vvtEvm--~~~~~e~~~~y-~DilqvGARN 138 (286)
T COG2876 63 ETAESVKAAGAKALRGGAFKPRTSPYSFQGLG-EEGLKLLKRAADETGLPVVTEVM--DVRDVEAAAEY-ADILQVGARN 138 (286)
T ss_pred HHHHHHHHcchhhccCCcCCCCCCcccccccC-HHHHHHHHHHHHHcCCeeEEEec--CHHHHHHHHhh-hhHHHhcccc
Confidence 45899999999986111111 23445565432 23466788889999999976432 33455555555 56554 3333
Q ss_pred CChhHHHHHHHhcCCCCcEEee---cCCHHHHHHHHH----hCCC-EEEEe-cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779 124 LTPADEENHINKHNFRVPFVCG---CRNLGESLRRIR----EGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~~a~~----~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
+....+.+.+.+ .+.+++.. .+|.+|-..|++ .|.. +|--. |- |.+.+.
T Consensus 139 MQNF~LLke~G~--~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGI--------------------Rtfe~~ 196 (286)
T COG2876 139 MQNFALLKEVGR--QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGI--------------------RTFEKA 196 (286)
T ss_pred hhhhHHHHHhcc--cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEeccc--------------------cccccc
Confidence 445555555544 34566553 467777665554 3442 22211 11 111111
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH-----HHHHHHcCCCEEEEc
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD-----AAMMMQLGCDGVFVG 252 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d-----i~~~~~~GadgV~VG 252 (310)
++ ..-+...+..+++..++||++-.+.+-+ ..+ +..++..||||+++=
T Consensus 197 TR---------ntLDi~aV~~~kq~THLPVivDpSH~~G-rr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 197 TR---------NTLDISAVPILKQETHLPVIVDPSHATG-RRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred cc---------ceechHHHHHHHhhcCCCEEECCCCccc-chhhHHHHHHHHHhccCCeeEEE
Confidence 11 1224566777888889999876666543 333 345567899999873
No 370
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.60 E-value=0.22 Score=49.98 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee---
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE--- 120 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~--- 120 (310)
.+-++.+.++|++.| .+ |.. .|. .....+.++.+++.. ++++++++. .+.+.++.+.++|||.|..
T Consensus 250 ~~r~~~l~~ag~d~i-~i-----D~~--~g~-~~~~~~~i~~ik~~~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g 319 (505)
T PLN02274 250 KERLEHLVKAGVDVV-VL-----DSS--QGD-SIYQLEMIKYIKKTYPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMG 319 (505)
T ss_pred HHHHHHHHHcCCCEE-EE-----eCC--CCC-cHHHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCC
Confidence 588999999999988 33 322 121 011246889999876 688876544 3457888999999999852
Q ss_pred ------cCC--------CChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEe
Q 037779 121 ------SEV--------LTPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 121 ------~~~--------~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~ 166 (310)
+.. ++.......+. +..+++++++ +++..++.+|+.+||+.+.+.
T Consensus 320 ~G~~~~t~~~~~~g~~~~~~i~~~~~~~-~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 320 SGSICTTQEVCAVGRGQATAVYKVASIA-AQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred CCccccCccccccCCCcccHHHHHHHHH-HhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 100 01111122222 2246888885 999999999999999999874
No 371
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.55 E-value=1.1 Score=38.87 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=78.4
Q ss_pred hHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHH
Q 037779 81 PQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIR 157 (310)
Q Consensus 81 ~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~ 157 (310)
.+.++.+.+.-=+||+......+ .+.++.+.+.|++.+-.. ...+..++++.+++....+.... .+-+.+++..+.+
T Consensus 3 ~~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~ 82 (187)
T PRK07455 3 QDWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIA 82 (187)
T ss_pred hHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHH
Confidence 34555565444467766543332 245677788999998743 23345677777766444343333 4566789999999
Q ss_pred hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH
Q 037779 158 EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 158 ~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d 237 (310)
.|+|++..-.. +.+..+.. +...++.+ + | .+|+++
T Consensus 83 ~gAdgv~~p~~----------------------------------------~~~~~~~~-~~~~~~~i-~--G-~~t~~e 117 (187)
T PRK07455 83 AGAQFCFTPHV----------------------------------------DPELIEAA-VAQDIPII-P--G-ALTPTE 117 (187)
T ss_pred cCCCEEECCCC----------------------------------------CHHHHHHH-HHcCCCEE-c--C-cCCHHH
Confidence 99998865210 11111211 12234653 3 5 899999
Q ss_pred HHHHHHcCCCEEEE
Q 037779 238 AAMMMQLGCDGVFV 251 (310)
Q Consensus 238 i~~~~~~GadgV~V 251 (310)
+.++.+.|+|-|-+
T Consensus 118 ~~~A~~~Gadyv~~ 131 (187)
T PRK07455 118 IVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999987
No 372
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.45 E-value=0.17 Score=50.51 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee---e
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD---E 120 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~---~ 120 (310)
++.++.+.++|++.| .+ |.....+ ..-.+.+++|++.. +++|++.+. .+.+.++.+.++|||.|- .
T Consensus 229 ~~~a~~Lv~aGvd~i-~~-----D~a~~~~---~~~~~~i~~ik~~~p~~~v~agnv-~t~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 229 AAKARALLEAGVDVL-VV-----DTAHGHQ---EKMLEALRAVRALDPGVPIVAGNV-VTAEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred HHHHHHHHHhCCCEE-EE-----eccCCcc---HHHHHHHHHHHHHCCCCeEEeecc-CCHHHHHHHHHcCCCEEEECcc
Confidence 588999999999997 33 3322211 12266788999886 788888543 345788899999999985 1
Q ss_pred c------CC---CChh--HHHHHHHh--cCCCCcEEee--cCCHHHHHHHHHhCCCEEEEe
Q 037779 121 S------EV---LTPA--DEENHINK--HNFRVPFVCG--CRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 121 ~------~~---~~~~--~~~~~~~~--~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~ 166 (310)
+ .. ...+ ..+..+.+ +..+++++++ +++..++.+++.+||+.+.+.
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 1 11 1112 22333322 2357888885 999999999999999999875
No 373
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=95.40 E-value=1.8 Score=38.28 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
.+.++.+.++|++.| .+. -|+...-.|+ -.++++. .+..+.-++.. ..++++...+..+|+|+|=.+ ..
T Consensus 88 lkeVd~L~~~Ga~II-A~D--aT~R~RP~~~----~~~~i~~-~k~~~~l~MAD--~St~ee~l~a~~~G~D~IGTTLsG 157 (229)
T COG3010 88 LKEVDALAEAGADII-AFD--ATDRPRPDGD----LEELIAR-IKYPGQLAMAD--CSTFEEGLNAHKLGFDIIGTTLSG 157 (229)
T ss_pred HHHHHHHHHCCCcEE-Eee--cccCCCCcch----HHHHHHH-hhcCCcEEEec--cCCHHHHHHHHHcCCcEEeccccc
Confidence 377999999999987 220 0111100011 0223333 23334444333 445678888889999998411 11
Q ss_pred ---------CChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEecC
Q 037779 124 ---------LTPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTKGE 168 (310)
Q Consensus 124 ---------~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g~ 168 (310)
.+..++++.+.+ .+..++++ .+|++.+.++.+.|++.|.|.+.
T Consensus 158 YT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsA 211 (229)
T COG3010 158 YTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSA 211 (229)
T ss_pred ccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcc
Confidence 112245555544 67888886 89999999999999999998644
No 374
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.39 E-value=1.4 Score=42.10 Aligned_cols=177 Identities=14% Similarity=0.168 Sum_probs=103.3
Q ss_pred HHHHHHHHcCCcEEEeccccc-chhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALERVP-ADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~-~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
++|+.+.+.|+..+--.-+.| |.+..|.|.. ...+..++++++.+++|++--.+ +...++.+.+. +|.+-+. ..
T Consensus 119 ~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~--d~~~v~~~~~~-~d~lqIga~~ 194 (352)
T PRK13396 119 ETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG-ESALELLAAAREATGLGIITEVM--DAADLEKIAEV-ADVIQVGARN 194 (352)
T ss_pred HHHHHHHHcCCCEEEeeeecCCCCCcccCCch-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHhh-CCeEEECccc
Confidence 679999999998752111111 2233344432 23366778888899999976533 33566667777 7887643 33
Q ss_pred CChhHHHHHHHhcCCCCcEEee--cC-CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779 124 LTPADEENHINKHNFRVPFVCG--CR-NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~--v~-t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
.....+++.+.+ .+.++++. .. |.+|...+++ .|. +++-.+ |. .|.. .|
T Consensus 195 ~~n~~LL~~va~--t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s-------------------~y 253 (352)
T PRK13396 195 MQNFSLLKKVGA--QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDR-------------------QY 253 (352)
T ss_pred ccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcC-------------------CC
Confidence 445566666654 45677765 34 7787766654 465 344443 21 1110 01
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC----HHHHHHHHHcCCCEEEEcccccc
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t----~~di~~~~~~GadgV~VGsai~~ 257 (310)
+ ....++..+..+++..++||++-++=+++. +.-...++.+||||+++=.-+.-
T Consensus 254 -~---------~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~p 311 (352)
T PRK13396 254 -T---------RNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNP 311 (352)
T ss_pred -C---------CCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCc
Confidence 0 112356677777776678997554433332 23345666789999999876654
No 375
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.38 E-value=0.42 Score=43.46 Aligned_cols=86 Identities=12% Similarity=0.257 Sum_probs=61.3
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC-CCh-------h
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY-SDP-------D 279 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~-~~~-------~ 279 (310)
.+.+.++.+++..++|| +.-..|-++.++.+...+|||+|++--+++.. +.+++|.+..... .+| .
T Consensus 89 Gs~~~l~~v~~~v~~Pv--L~KDFIid~~QI~ea~~~GADavLLI~~~L~~----~~l~~l~~~a~~lGle~LVEVh~~~ 162 (247)
T PRK13957 89 GSLEDLKSVSSELKIPV--LRKDFILDEIQIREARAFGASAILLIVRILTP----SQIKSFLKHASSLGMDVLVEVHTED 162 (247)
T ss_pred CCHHHHHHHHHhcCCCE--EeccccCCHHHHHHHHHcCCCEEEeEHhhCCH----HHHHHHHHHHHHcCCceEEEECCHH
Confidence 35677788888778999 56899999999999999999999998888862 3455555554442 232 2
Q ss_pred hHHhhhhccCCceeccccccc
Q 037779 280 VLAEVSCGLGEAMVGIDLNDV 300 (310)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~ 300 (310)
- .+.+-..|..+.||.=.|.
T Consensus 163 E-l~~a~~~ga~iiGINnRdL 182 (247)
T PRK13957 163 E-AKLALDCGAEIIGINTRDL 182 (247)
T ss_pred H-HHHHHhCCCCEEEEeCCCC
Confidence 2 2334556888888865543
No 376
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.35 E-value=2.1 Score=39.50 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeecccc----chHHHHHHHHcC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIG----HFVEAQILEAIG 114 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~----~~~~~~~~~~aG 114 (310)
.+.++.+.+.|++++...- ..|. ..+...+ .++.+.+.. ++||++...-. ..+.++.+.++|
T Consensus 25 ~~~i~~l~~~Gv~gl~~~G--------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLG--------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHHHTTSSEEEESS--------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEECC--------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcC
Confidence 3779999999999985441 0111 1122222 333444433 58998874432 135667888899
Q ss_pred CCeee-ecC---CCChhHHHHHHHh
Q 037779 115 VDYVD-ESE---VLTPADEENHINK 135 (310)
Q Consensus 115 ad~v~-~~~---~~~~~~~~~~~~~ 135 (310)
||++. .+. ..+..++.+.++.
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ 121 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRA 121 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHH
T ss_pred ceEEEEeccccccchhhHHHHHHHH
Confidence 99987 321 1345555555543
No 377
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.34 E-value=2.7 Score=40.12 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=101.7
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
+.+++++.++..|.++. +...+ +.|... -...++.+.+.. .+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus 34 vi~AAee~~sPvIiq~s--~~~~~-~~g~~~--~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~ 108 (347)
T PRK09196 34 IMEAADETDSPVILQAS--AGARK-YAGEPF--LRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSL 108 (347)
T ss_pred HHHHHHHhCCCEEEECC--ccHhh-hCCHHH--HHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCC
Confidence 47777788888876652 11111 222100 022344445455 4899886 33345677788888999998733 22
Q ss_pred C-------Chh-------HHHHHHHhcCCCCcEEee-----------------------------cCCHHHHHHHH-HhC
Q 037779 124 L-------TPA-------DEENHINKHNFRVPFVCG-----------------------------CRNLGESLRRI-REG 159 (310)
Q Consensus 124 ~-------~~~-------~~~~~~~~~~~~l~v~~~-----------------------------v~t~~ea~~a~-~~G 159 (310)
+ +.+ ++++..+..+ +.+=.+ .++++|+++-. +.|
T Consensus 109 l~~~~~~~p~eENI~~Tkevve~Ah~~G--v~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~Tg 186 (347)
T PRK09196 109 KADGKTPASYEYNVDVTRKVVEMAHACG--VSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQ 186 (347)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhC
Confidence 2 222 2333333222 211111 34677777665 568
Q ss_pred CCEEEEe-cCCCCCchHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCC---
Q 037779 160 AAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVA--- 233 (310)
Q Consensus 160 ad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~--- 233 (310)
+|.+.+. |..++. ++. ..+. ...-++++++.|.+.. ++|+|.=-++|+.
T Consensus 187 vD~LAvaiGT~HG~------------------Yk~~~~p~-------~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~ 241 (347)
T PRK09196 187 VDALAIAIGTSHGA------------------YKFTRKPT-------GDVLAIDRIKEIHARLPNTHLVMHGSSSVPQEL 241 (347)
T ss_pred cCeEhhhhccccCC------------------CCCCCCCC-------hhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHH
Confidence 8887653 332221 010 0000 0012688889888877 7998764444441
Q ss_pred -----------------CHHHHHHHHHcCCCEEEEcccccc
Q 037779 234 -----------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 234 -----------------t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..++++++.++|..-|=++|.+..
T Consensus 242 ~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 242 LDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred HHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 358899999999999999998865
No 378
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=95.34 E-value=0.85 Score=40.59 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred hHHHHHHHHcCCCeeee-c-----C----------CCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779 104 FVEAQILEAIGVDYVDE-S-----E----------VLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 104 ~~~~~~~~~aGad~v~~-~-----~----------~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
.+..+.+..+|...|.. + + .+.....++.++. |..++....-+.|++|+..+.+.|+|+|..|
T Consensus 104 ~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eAqa~~~aGadiiv~h 183 (276)
T COG5564 104 VDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEAQAMTKAGADIIVAH 183 (276)
T ss_pred HHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHHHHHHHcCcceeeec
Confidence 35667788888877651 1 1 1112233445544 5556766777889999999999999999876
Q ss_pred -cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH--
Q 037779 167 -GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-- 243 (310)
Q Consensus 167 -g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-- 243 (310)
|+.-++.+- ..+.++.+...+. ...-.+..+.+.+. -+|+ .-.|=|.+|+|.+-.+.
T Consensus 184 mg~ttgG~Ig--------------ar~~~Sl~~~vel---~~~~~~aar~v~kd-~i~l--~~GGPi~~p~da~yi~d~c 243 (276)
T COG5564 184 MGLTTGGLIG--------------ARSALSLADCVEL---IELAAEAARGVRKD-VIPL--CHGGPISMPEDARYILDRC 243 (276)
T ss_pred ccccccceec--------------cccccCHHHHHHH---HHHHHHHHhhhhhc-eeee--ccCCCcCCchhhHHHHhhC
Confidence 554333321 1111111110000 00011112222221 1344 34566999999988886
Q ss_pred cCCCEEEEccccccCC
Q 037779 244 LGCDGVFVGSGVFKSG 259 (310)
Q Consensus 244 ~GadgV~VGsai~~~~ 259 (310)
-|+||+.=+|.+-+-+
T Consensus 244 ~~~~gfygassmerlp 259 (276)
T COG5564 244 PGCDGFYGASSMERLP 259 (276)
T ss_pred CCCCcccccchhhccc
Confidence 3999999999877643
No 379
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.33 E-value=2.2 Score=39.06 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCC---hHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVA-RMSD---PQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV 115 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~---~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa 115 (310)
+.++.+.+.|++++...- ..|.. .+.. .+.++.+++.+ ++||++...-.. .+.++.+.++|+
T Consensus 22 ~~i~~l~~~Gv~gi~~~G--------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Ga 93 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLG--------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGA 93 (281)
T ss_pred HHHHHHHHcCCCEEEECC--------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCC
Confidence 678999999999984331 01111 1111 23445555554 589988754432 245667788999
Q ss_pred Ceeee-cCC---CChhHHHHHHHh
Q 037779 116 DYVDE-SEV---LTPADEENHINK 135 (310)
Q Consensus 116 d~v~~-~~~---~~~~~~~~~~~~ 135 (310)
|.+.. +.. .+..++.+.++.
T Consensus 94 d~v~v~pP~y~~~~~~~~~~~~~~ 117 (281)
T cd00408 94 DGVLVVPPYYNKPSQEGIVAHFKA 117 (281)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHH
Confidence 99873 211 234455555543
No 380
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=95.33 E-value=2.8 Score=40.09 Aligned_cols=179 Identities=11% Similarity=0.063 Sum_probs=100.4
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
+.+++++.++..|.++. +... .+.|... -...++.+.+.. .+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus 34 vi~AAEe~~sPvIlq~s--~~~~-~~~g~~~--~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~ 108 (347)
T PRK13399 34 IMEAAEATDSPVILQAS--RGAR-KYAGDAM--LRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSL 108 (347)
T ss_pred HHHHHHHhCCCEEEECC--cchh-hhCCHHH--HHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCC
Confidence 46777777888876652 1111 1222100 122344555556 4899886 44445678888899999998733 21
Q ss_pred CC-------hh-------HHHHHHHhcCCCCcEEee-----------------------------cCCHHHHHHHH-HhC
Q 037779 124 LT-------PA-------DEENHINKHNFRVPFVCG-----------------------------CRNLGESLRRI-REG 159 (310)
Q Consensus 124 ~~-------~~-------~~~~~~~~~~~~l~v~~~-----------------------------v~t~~ea~~a~-~~G 159 (310)
++ .+ ++++..+..+ +.+=++ .++++|+..-. +.|
T Consensus 109 l~~~~~~~~~eeNI~~Trevve~Ah~~G--vsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~Tg 186 (347)
T PRK13399 109 LADGKTPASYDYNVDVTRRVTEMAHAVG--VSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTG 186 (347)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHcC--CeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHHHC
Confidence 22 12 2333333222 211111 34567776655 458
Q ss_pred CCEEEEe-cCCCCCchHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCC---
Q 037779 160 AAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVA--- 233 (310)
Q Consensus 160 ad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~--- 233 (310)
+|.+.+. |..++. ++. ..++ ...-++++++.|.+.. ++|+|.=-++|+.
T Consensus 187 vD~LAvaiGt~HG~------------------Yk~~~~p~-------~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~ 241 (347)
T PRK13399 187 VDALAIAIGTSHGA------------------YKFTRKPD-------GDILAIDRIEEIHARLPNTHLVMHGSSSVPQEL 241 (347)
T ss_pred cCEEhhhhccccCC------------------cCCCCCCC-------hhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHH
Confidence 8877553 332221 010 0010 0012578888998876 6998754344432
Q ss_pred -----------------CHHHHHHHHHcCCCEEEEcccccc
Q 037779 234 -----------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 234 -----------------t~~di~~~~~~GadgV~VGsai~~ 257 (310)
..++++++++.|..-|=++|.+..
T Consensus 242 ~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 242 QEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred HHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 148899999999999999998765
No 381
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.30 E-value=0.082 Score=46.98 Aligned_cols=88 Identities=31% Similarity=0.272 Sum_probs=60.0
Q ss_pred ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHH
Q 037779 28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA 107 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~ 107 (310)
.++..+++.|+-......++++.+.+.|++.|+.-.+.. +.+.. ...+.+.++++++.+++||++...+.+.+++
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~-~~~~~----~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTR-EQRYS----GPADWDYIAEIKEAVSIPVIANGDIFSLEDA 198 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCH-HHcCC----CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHH
Confidence 356667777663321124779999999999984331111 11111 1235788999999999999999998877778
Q ss_pred HHHHHc-CCCeeee
Q 037779 108 QILEAI-GVDYVDE 120 (310)
Q Consensus 108 ~~~~~a-Gad~v~~ 120 (310)
+.+.+. |+|.|..
T Consensus 199 ~~~l~~~gad~V~i 212 (231)
T cd02801 199 LRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHhcCCCEEEE
Confidence 777776 8999873
No 382
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=95.22 E-value=0.27 Score=47.19 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=43.6
Q ss_pred CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS 276 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~ 276 (310)
.+|| +..|+| +++++.+++. .+.||++||++-++++++.+.++.+.+.+...+
T Consensus 213 ~v~I--LYGGSV-~~~N~~~l~~~~~iDG~LVG~asl~~~~f~~Ii~~~~~~~~~~~ 266 (355)
T PRK14905 213 KIPV--LYGGSV-NLENANELIMKPHIDGLFIGRSAWDAQCFHALIADALKALAGSK 266 (355)
T ss_pred ceeE--EEeCcC-CHHHHHHHhcCCCCCEEEechhhccHHHHHHHHHHHHHhccCCc
Confidence 4678 679999 5888888875 699999999999999888888888877765543
No 383
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.21 E-value=1.1 Score=41.63 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHc---------CCcEEEecccccchhhhcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccch
Q 037779 42 VVTPEQARIAEEA---------GACAVMALERVPADIRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGHF 104 (310)
Q Consensus 42 ~~~~~~a~~~~~~---------Ga~~I~~l~~~~~d~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~~ 104 (310)
+-|.--|+.++++ |++++. .-. ....+..|. ..+.- .+.++.|...+++||++. .. ++.
T Consensus 16 ~~D~~SA~~~e~~~~~~~~~~~Gf~ai~-~ss--~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~ 91 (285)
T TIGR02320 16 AHNGLSALIAEEARVEVGGESLGFDGIW-SSS--LTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNF 91 (285)
T ss_pred CcCHHHHHHHHHhhhcccCcCCCcCEEE-ech--HHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCH
Confidence 4455668888899 999872 200 001111111 01111 233556677789998874 33 432
Q ss_pred ----HHHHHHHHcCCCeeeecC-----------------CCChhHHHHHHHh-----cCCCCcEEeecC------CHHHH
Q 037779 105 ----VEAQILEAIGVDYVDESE-----------------VLTPADEENHINK-----HNFRVPFVCGCR------NLGES 152 (310)
Q Consensus 105 ----~~~~~~~~aGad~v~~~~-----------------~~~~~~~~~~~~~-----~~~~l~v~~~v~------t~~ea 152 (310)
..++.+.++|+.++.+-+ .++.++..+.++. .+.++.+++.+. ..+|+
T Consensus 92 ~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eA 171 (285)
T TIGR02320 92 EHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDA 171 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHH
Confidence 345677889999998522 2344444444433 123355555421 23333
Q ss_pred ----HHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-cCCCCEEEE
Q 037779 153 ----LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-LGRLPVVHF 227 (310)
Q Consensus 153 ----~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~~~iPVv~i 227 (310)
+.+.++|||.+.+.+... +.+. -.++.+.++. ..++|++++
T Consensus 172 i~Ra~ay~eAGAD~ifv~~~~~------------------------~~~e----------i~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 172 LKRAEAYAEAGADGIMIHSRKK------------------------DPDE----------ILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred HHHHHHHHHcCCCEEEecCCCC------------------------CHHH----------HHHHHHHhhhhCCCCCEEEe
Confidence 334467888777752100 0000 1122333321 125688643
Q ss_pred ccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 228 a~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
.+ -.-.-.+.++.++|++-|..|..+++
T Consensus 218 -~~-~~~~~~~~eL~~lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 218 -PT-SYYTTPTDEFRDAGISVVIYANHLLR 245 (285)
T ss_pred -cC-CCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence 32 11122578899999999999998876
No 384
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=95.17 E-value=0.16 Score=56.27 Aligned_cols=118 Identities=20% Similarity=0.255 Sum_probs=72.0
Q ss_pred cCCCeee---ecCCCChhHHHHHHHh---cCCCCcEEeecC---CHHHHH-HHHHhCCCEEEEecCC-CCCchH-HHHHH
Q 037779 113 IGVDYVD---ESEVLTPADEENHINK---HNFRVPFVCGCR---NLGESL-RRIREGAAMIRTKGEA-GTGNIV-EAVRH 180 (310)
Q Consensus 113 aGad~v~---~~~~~~~~~~~~~~~~---~~~~l~v~~~v~---t~~ea~-~a~~~Gad~I~v~g~~-~~~~~~-~~~~~ 180 (310)
-|.+.+. .++..+++++.+.+.. ..++.++.+.+- ...++. -..++|||+|.+.|.. +|+--. ...
T Consensus 964 ~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~-- 1041 (1485)
T PRK11750 964 PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSV-- 1041 (1485)
T ss_pred CCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHH--
Confidence 4777765 3466677777666544 334555555422 222332 3457899999998663 444210 000
Q ss_pred HHHhhcceecccccCchhHHhhhccCCCcHHH-H----HHHHhc-C--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDL-V----MQTKQL-G--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l-~----~~i~~~-~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
...+.||++ + +.+.+. . ++.+ +++||+.|+.|+..++.+|||.|.+|
T Consensus 1042 -----------------------~~~GlP~e~gL~~~~~~L~~~glR~rv~l--~a~Ggl~t~~Dv~kA~aLGAd~~~~g 1096 (1485)
T PRK11750 1042 -----------------------KYAGSPWELGLAETHQALVANGLRHKIRL--QVDGGLKTGLDVIKAAILGAESFGFG 1096 (1485)
T ss_pred -----------------------hhCCccHHHHHHHHHHHHHhcCCCcceEE--EEcCCcCCHHHHHHHHHcCCcccccc
Confidence 012335444 2 223332 2 3555 78999999999999999999999999
Q ss_pred ccccc
Q 037779 253 SGVFK 257 (310)
Q Consensus 253 sai~~ 257 (310)
++.+-
T Consensus 1097 t~~li 1101 (1485)
T PRK11750 1097 TGPMV 1101 (1485)
T ss_pred hHHHH
Confidence 98764
No 385
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=95.00 E-value=0.14 Score=50.62 Aligned_cols=121 Identities=24% Similarity=0.313 Sum_probs=70.2
Q ss_pred cCCCeee---ecCCCChhHHHHHHHh-cC--CCCcEEee--c-CCHHHHHH-HHHhCCCEEEEecCC-CCCchHHHHHHH
Q 037779 113 IGVDYVD---ESEVLTPADEENHINK-HN--FRVPFVCG--C-RNLGESLR-RIREGAAMIRTKGEA-GTGNIVEAVRHV 181 (310)
Q Consensus 113 aGad~v~---~~~~~~~~~~~~~~~~-~~--~~l~v~~~--v-~t~~ea~~-a~~~Gad~I~v~g~~-~~~~~~~~~~~~ 181 (310)
-|.+.+- .++..+++++..++.. +. ..-.+.+. . +....+.. ..+++||+|.+.|.. +||-.+
T Consensus 271 pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP------ 344 (485)
T COG0069 271 PGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASP------ 344 (485)
T ss_pred CCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCc------
Confidence 5777664 3466777777776655 22 22233332 1 22333333 568899999998763 444210
Q ss_pred HHhhcceecccccCchhHHhhhccCCCcHHHH-----HHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779 182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLV-----MQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~-----~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai 255 (310)
+..+ ...+.||++. +.+... .+=-|.++++||+.|+.|+..++.+|||.|-+|++.
T Consensus 345 ---------~~~~---------~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~ 406 (485)
T COG0069 345 ---------LTSI---------DHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAA 406 (485)
T ss_pred ---------HhHh---------hcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHH
Confidence 0000 0123344432 122222 122233378999999999999999999999999976
Q ss_pred cc
Q 037779 256 FK 257 (310)
Q Consensus 256 ~~ 257 (310)
+-
T Consensus 407 li 408 (485)
T COG0069 407 LV 408 (485)
T ss_pred HH
Confidence 54
No 386
>PRK08508 biotin synthase; Provisional
Probab=94.98 E-value=1.9 Score=39.88 Aligned_cols=209 Identities=11% Similarity=0.172 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEVL 124 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~ 124 (310)
+.|+.+.+.|+..+... +..+.+.......-.+.++.+++.. ++.+.......+.+.++.+.++|+|.+... ..
T Consensus 47 ~~a~~a~~~g~~~~~lv----~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~-lE 121 (279)
T PRK08508 47 QEAKMAKANGALGFCLV----TSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHN-LE 121 (279)
T ss_pred HHHHHHHHCCCCEEEEE----eccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEccc-cc
Confidence 44666666799887432 1111000000000034455666553 555544444445678899999999998632 11
Q ss_pred ChhHHHHHHHhcCCCCcEEeecCCHHHHHH----HHHhCCCEEE--EecCCCCC-chHHHHHHHHHhhcceecccccCch
Q 037779 125 TPADEENHINKHNFRVPFVCGCRNLGESLR----RIREGAAMIR--TKGEAGTG-NIVEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~----a~~~Gad~I~--v~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d 197 (310)
+.++ .+. .+ ...++.++..+ +.+.|..... +.|...+. ...+.+.+++++..+..-+..+.+.
T Consensus 122 t~~~---~~~----~i---~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~ 191 (279)
T PRK08508 122 TSKE---FFP----KI---CTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPN 191 (279)
T ss_pred chHH---Hhc----CC---CCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCC
Confidence 1111 111 11 23455665433 3455653321 12322111 2345556666666663333322211
Q ss_pred hHHhhhccCCCcHHHHHHHHhc----CCCCEEEEccCCC-CCHH-HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779 198 EVFTFAKNIAAPYDLVMQTKQL----GRLPVVHFAAGGV-ATPA-DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA 271 (310)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~i~~~----~~iPVv~ia~GGI-~t~~-di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~ 271 (310)
+-.........+.+.++.+.-. .+.-|- .+||- .... .-..++.+||+++++|..++....+.+.-.++++.
T Consensus 192 ~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~--~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~ 269 (279)
T PRK08508 192 PALPLKAPTLSADEALEIVRLAKEALPNARLM--VAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKS 269 (279)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCceee--ecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHH
Confidence 1000000012234444443211 122221 25664 2222 33456689999999999999887666555555443
No 387
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.95 E-value=0.17 Score=44.72 Aligned_cols=66 Identities=23% Similarity=0.189 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
.++.+.+..|++++ .| ....|.....+++.++++++.+++|+++...+.+.++++.+.++|||.|.
T Consensus 138 ~~a~aa~~~G~~~i-~L-------e~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 138 AYCLAAKYFGMKWV-YL-------EAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred HHHHHHHHcCCCEE-EE-------EcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 45777777899988 34 12334444566999999999999999999999888889888899999985
No 388
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=94.93 E-value=0.4 Score=42.87 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=50.2
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV 123 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~ 123 (310)
+|...+..|.. +.+| | ++|. ..+++.++++++.+ ++|+++..++.+.++++.+.++|||.|. .+..
T Consensus 140 yA~aae~~g~~-ivyL-----e---~SG~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai 207 (219)
T cd02812 140 YALAAEYLGMP-IVYL-----E---YSGA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIV 207 (219)
T ss_pred HHHHHHHcCCe-EEEe-----C---CCCC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 45666666733 4365 2 3344 36799999999998 9999999999888899999999999988 4433
No 389
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=94.92 E-value=2.7 Score=37.81 Aligned_cols=185 Identities=21% Similarity=0.188 Sum_probs=102.9
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee--ccccchHH----HHHHH
Q 037779 40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK--ARIGHFVE----AQILE 111 (310)
Q Consensus 40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k--d~i~~~~~----~~~~~ 111 (310)
.++.+.+.|+.+.++|++.| ++ +++.. |+.=-..+..+++|++.+. .|++.- |.-..... +....
T Consensus 5 vSv~~~~EA~~a~~~gaDiI-D~----K~P~~--GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a 77 (235)
T PF04476_consen 5 VSVRNVEEAEEALAGGADII-DL----KNPAE--GALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAA 77 (235)
T ss_pred ecCCCHHHHHHHHhCCCCEE-Ec----cCCCC--CCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 35567899999999999988 88 55543 3322235888999988774 788774 32211111 22233
Q ss_pred HcCCCeeeec--CCCChhHHHHHH-------HhcCCCCcEEe-ecC--------CHHHH-HHHHHhCCCEEEEecCCCCC
Q 037779 112 AIGVDYVDES--EVLTPADEENHI-------NKHNFRVPFVC-GCR--------NLGES-LRRIREGAAMIRTKGEAGTG 172 (310)
Q Consensus 112 ~aGad~v~~~--~~~~~~~~~~~~-------~~~~~~l~v~~-~v~--------t~~ea-~~a~~~Gad~I~v~g~~~~~ 172 (310)
..|+|+|-+- ...+..+..+.+ +....+..+++ ... ++.++ ..+.+.|++.+++-....++
T Consensus 78 ~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg 157 (235)
T PF04476_consen 78 ATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDG 157 (235)
T ss_pred hcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCC
Confidence 4799998622 112333333222 22222222222 211 22233 34567898888876332222
Q ss_pred chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779 173 NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG 252 (310)
. +.+..++.+. -.+++...++. .+-+ -.+|-+ ..+|+..+...++|-+.+=
T Consensus 158 ~---------------~L~d~~~~~~----------L~~Fv~~ar~~-gL~~--aLAGSL-~~~di~~L~~l~pD~lGfR 208 (235)
T PF04476_consen 158 G---------------SLFDHLSEEE----------LAEFVAQARAH-GLMC--ALAGSL-RFEDIPRLKRLGPDILGFR 208 (235)
T ss_pred C---------------chhhcCCHHH----------HHHHHHHHHHc-cchh--hccccC-ChhHHHHHHhcCCCEEEec
Confidence 1 0111111111 12233333332 2333 337888 5999999999999999999
Q ss_pred cccccCCC
Q 037779 253 SGVFKSGD 260 (310)
Q Consensus 253 sai~~~~d 260 (310)
++++...|
T Consensus 209 GAvC~ggd 216 (235)
T PF04476_consen 209 GAVCGGGD 216 (235)
T ss_pred hhhCCCCC
Confidence 99998753
No 390
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.88 E-value=1.2 Score=40.68 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=47.7
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhh--hcCCC--CCCCC----hHHHHHHHhhcCcceEeeccc-c---c-h---
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIR--AQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARI-G---H-F--- 104 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r--~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i-~---~-~--- 104 (310)
.+-|.-.|+.++++|++++..- |-- ...|. ...-. ...++.|++.++.|+++-|.- + + .
T Consensus 18 ~ayD~~sA~l~e~aG~d~i~vG-----ds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~a 92 (254)
T cd06557 18 TAYDYPTAKLADEAGVDVILVG-----DSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQA 92 (254)
T ss_pred eCCCHHHHHHHHHcCCCEEEEC-----HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHH
Confidence 4567788999999999998422 110 00111 11111 223456677788995554432 3 1 1
Q ss_pred -HHH-HHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779 105 -VEA-QILEAIGVDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 105 -~~~-~~~~~aGad~v~~~~~~~~~~~~~~~~~ 135 (310)
..+ +.+.++||+.|.+-+.....+.++.+..
T Consensus 93 v~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~ 125 (254)
T cd06557 93 LRNAARLMKEAGADAVKLEGGAEVAETIRALVD 125 (254)
T ss_pred HHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH
Confidence 222 3445599999985443223344444443
No 391
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.21 Score=44.67 Aligned_cols=79 Identities=30% Similarity=0.422 Sum_probs=60.8
Q ss_pred ecCCccc--cCC-CHHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhhcCcceEeeccccchHHHHH
Q 037779 34 LRGGVIM--DVV-TPEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 34 l~~g~i~--~~~-~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~ 109 (310)
.+.|+.. ++. |+-.++++++.|+.+++-+. ... |+ .=+.|+..++-|++..++||++.-.+|...++-.
T Consensus 127 v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~------aPI-GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~ 199 (262)
T COG2022 127 VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLG------API-GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQ 199 (262)
T ss_pred HhCCCEEeeccCCCHHHHHHHHhcCceEecccc------ccc-cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHH
Confidence 3556643 343 48899999999999987551 011 22 1256789999999999999999999998778888
Q ss_pred HHHcCCCeee
Q 037779 110 LEAIGVDYVD 119 (310)
Q Consensus 110 ~~~aGad~v~ 119 (310)
..+.|+|.|+
T Consensus 200 aMElG~DaVL 209 (262)
T COG2022 200 AMELGADAVL 209 (262)
T ss_pred HHhcccceee
Confidence 8899999998
No 392
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=94.83 E-value=0.24 Score=45.62 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.4
Q ss_pred EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779 224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~ 258 (310)
+.++++|||+ ++++..+.+.|.|.+.+|+.++..
T Consensus 240 ~~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 240 VKIEASGGLD-EENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred eEEEEeCCCC-HHHHHHHHHcCCCEEEeCcccccC
Confidence 4447899995 999999999999999999999885
No 393
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.79 E-value=2.6 Score=40.15 Aligned_cols=177 Identities=18% Similarity=0.184 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCcEEEec-ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMAL-ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l-~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
++|+.+.++|++.+-.. .--.|.+..|.|.. ...+..+++.++.+++|++.-.+ +...++.+.+. +|.+-+. ..
T Consensus 111 ~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g-~~gL~~L~~~~~~~Gl~v~tev~--d~~~~~~l~~~-vd~lqIgAr~ 186 (335)
T PRK08673 111 EIARAVKEAGAQILRGGAFKPRTSPYSFQGLG-EEGLKLLAEAREETGLPIVTEVM--DPRDVELVAEY-VDILQIGARN 186 (335)
T ss_pred HHHHHHHHhchhhccCcEecCCCCCccccccc-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHHh-CCeEEECccc
Confidence 67999999999854111 01112222333321 23355677888889999976533 33566667677 8877643 44
Q ss_pred CChhHHHHHHHhcCCCCcEEeec--C-CHHHHHHHHH----hCCC-EEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779 124 LTPADEENHINKHNFRVPFVCGC--R-NLGESLRRIR----EGAA-MIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v--~-t~~ea~~a~~----~Gad-~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
.....+++.+.+ .+.++++.. . |.+|...+.+ .|.. ++-.+ |. .|.+ +
T Consensus 187 ~~N~~LL~~va~--~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~--------------------~ 244 (335)
T PRK08673 187 MQNFDLLKEVGK--TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFET--------------------A 244 (335)
T ss_pred ccCHHHHHHHHc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCC--------------------c
Confidence 455666666654 457777753 3 7787766553 4553 44333 22 1211 0
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC----HHHHHHHHHcCCCEEEEccccccC
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t----~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.+ ...+...+..+++..+.||+..++=+.+. +.-...+..+||||+++=.-+.-.
T Consensus 245 -~~---------~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd 303 (335)
T PRK08673 245 -TR---------NTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPE 303 (335)
T ss_pred -Ch---------hhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcc
Confidence 01 12245566677776678996544444333 244567778999999998866553
No 394
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=94.78 E-value=0.04 Score=52.50 Aligned_cols=55 Identities=31% Similarity=0.491 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR 266 (310)
Q Consensus 210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~ 266 (310)
..+...+++..++|| |+.|||.+++.+.++++.| +|.|.+|++++..+|....++
T Consensus 280 ~~~a~~ik~~~~~pv--i~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~ 335 (341)
T PF00724_consen 280 LDLAEAIKKAVKIPV--IGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAR 335 (341)
T ss_dssp HHHHHHHHHHHSSEE--EEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHH
T ss_pred hhhhhhhhhhcCceE--EEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHH
Confidence 356677777778899 5679999999899999875 999999999999888776554
No 395
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=94.60 E-value=0.056 Score=50.77 Aligned_cols=88 Identities=31% Similarity=0.294 Sum_probs=57.3
Q ss_pred ccceeeecCCccccCC-CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779 28 VGLAQMLRGGVIMDVV-TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE 106 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~-~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~ 106 (310)
.|+..++|.|+-.+.. ..++++.++++|+++|.+.-+.+.+ + +.| ..+.+.++++++.+++||+.+..+.+.++
T Consensus 123 ~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q-~-~~~---~a~w~~i~~i~~~~~ipvi~NGdI~s~~d 197 (309)
T PF01207_consen 123 IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ-R-YKG---PADWEAIAEIKEALPIPVIANGDIFSPED 197 (309)
T ss_dssp SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC-C-CTS------HHHHHHCHHC-TSEEEEESS--SHHH
T ss_pred cceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh-c-CCc---ccchHHHHHHhhcccceeEEcCccCCHHH
Confidence 5788999998863332 2588999999999998443243322 1 222 45688999999999999999998887777
Q ss_pred HHHHHH-cCCCeeee
Q 037779 107 AQILEA-IGVDYVDE 120 (310)
Q Consensus 107 ~~~~~~-aGad~v~~ 120 (310)
++.+.+ .|+|+|-+
T Consensus 198 ~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 198 AERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHCCCH-SSEEEE
T ss_pred HHHHHHhcCCcEEEE
Confidence 776666 59999874
No 396
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=94.54 E-value=0.83 Score=45.69 Aligned_cols=88 Identities=24% Similarity=0.382 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCEEEEccCCCCCHHHHHHHH------HcC-----CCEEEEccccccCCCHH--HHHHHHHHH-------
Q 037779 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMM------QLG-----CDGVFVGSGVFKSGDPV--RRARAIVQA------- 271 (310)
Q Consensus 212 l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~------~~G-----adgV~VGsai~~~~dp~--~~~~~~~~~------- 271 (310)
.+..++...+ |++++.|||+++++....+ ++| +||+++||+.|.+..-. ..+|+.+-.
T Consensus 204 tYs~lR~~~N--Ivl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEatTSp~vK~~lv~t~Gvdd~ 281 (717)
T COG4981 204 TYSELRSRDN--IVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEATTSPAVKEALVATQGVDDD 281 (717)
T ss_pred HHHHHhcCCC--EEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhhccCCHHHHHHHhhCCCCCch
Confidence 3444554443 4447899999999987654 223 89999999999865321 123333222
Q ss_pred --HHcCCChhhHHhhhhccCCceeccccccch
Q 037779 272 --VTNYSDPDVLAEVSCGLGEAMVGIDLNDVK 301 (310)
Q Consensus 272 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
+..|+.|-+....--++|++|--|+-..++
T Consensus 282 ~W~~~g~a~~Gm~s~rSqLgadIheidn~~~~ 313 (717)
T COG4981 282 EWEGTGKAPGGMASVRSQLGADIHEIDNRGAM 313 (717)
T ss_pred hceecCCCCCceeeehhhhCCcHHhhhhHHHH
Confidence 122445666666667778887766644433
No 397
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.53 E-value=0.3 Score=43.32 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=60.0
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779 40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
.++.+.+.++.+.+.|++.+..-+..-+.... .......+.++++++.+++|+++..++.+.+.+..+.++|||.|.
T Consensus 124 ~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~---~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~ 200 (221)
T PRK01130 124 ADCSTLEEGLAAQKLGFDFIGTTLSGYTEETK---KPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVV 200 (221)
T ss_pred EeCCCHHHHHHHHHcCCCEEEcCCceeecCCC---CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 34566788899999999987321100000000 111234788999999999999999888777788888899999998
Q ss_pred -ecCCCChhHHHHH
Q 037779 120 -ESEVLTPADEENH 132 (310)
Q Consensus 120 -~~~~~~~~~~~~~ 132 (310)
.+....+.+..+.
T Consensus 201 iGsai~~~~~~~~~ 214 (221)
T PRK01130 201 VGGAITRPEEITKW 214 (221)
T ss_pred EchHhcCCHHHHHH
Confidence 4444444444443
No 398
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.50 E-value=3.7 Score=37.44 Aligned_cols=175 Identities=11% Similarity=0.084 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
+.|+...+.|+..+---- ...|.+..|.|-.. .-+..+.++++..++|++--.+ +...++.+.+ .+|.+-+. ..
T Consensus 33 ~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~--d~~~v~~~~e-~vdilqIgs~~ 108 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIM--SERQLEEAYD-YLDVIQVGARN 108 (250)
T ss_pred HHHHHHHHcCCCEEEecccCCCCCCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHh-cCCEEEECccc
Confidence 679999999998761110 11233444544321 2466677888889999976433 3356666666 58888744 33
Q ss_pred CChhHHHHHHHhcCCCCcEEeec---CCHHHHHHHHH----hCC-CEEEEe-cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779 124 LTPADEENHINKHNFRVPFVCGC---RNLGESLRRIR----EGA-AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v---~t~~ea~~a~~----~Ga-d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
....++.+.+.+ .+.++++.. .|++|.+.+++ .|. +++-.+ |. .+ +++.
T Consensus 109 ~~n~~LL~~va~--tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~-------------------Y~~~ 166 (250)
T PRK13397 109 MQNFEFLKTLSH--IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV-RG-------------------YDVE 166 (250)
T ss_pred ccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc-CC-------------------CCCc
Confidence 445566666654 457777753 47777665553 466 455444 22 11 1111
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc--CCCCC--HHHHHHHHHcCCCEEEEcccc
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~--GGI~t--~~di~~~~~~GadgV~VGsai 255 (310)
. ....+..-+..+++..++||++-.+ +|... +.-...++.+||||+++=+-+
T Consensus 167 ~---------~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 167 T---------RNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred c---------ccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 0 0112344455666655789853111 33211 133566678999999987643
No 399
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.48 E-value=0.18 Score=47.44 Aligned_cols=74 Identities=30% Similarity=0.316 Sum_probs=55.8
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
..+.+.+.++.++++|+|+|..- .+.-+|. ...++..+++++++.+++||+....+.+...+..+.+.||+.|
T Consensus 114 ~~v~s~~~a~~a~~~GaD~Ivv~------g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV 187 (307)
T TIGR03151 114 PVVASVALAKRMEKAGADAVIAE------GMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAV 187 (307)
T ss_pred EEcCCHHHHHHHHHcCCCEEEEE------CcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEe
Confidence 34566899999999999998421 1122222 1234588999999999999999999987677777778999999
Q ss_pred e
Q 037779 119 D 119 (310)
Q Consensus 119 ~ 119 (310)
.
T Consensus 188 ~ 188 (307)
T TIGR03151 188 Q 188 (307)
T ss_pred e
Confidence 7
No 400
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=94.32 E-value=0.3 Score=43.30 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCCcEEeecCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779 128 DEENHINKHNFRVPFVCGCRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD 187 (310)
Q Consensus 128 ~~~~~~~~~~~~l~v~~~v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~ 187 (310)
+.++.+++..++..++++.+|.+ |++.+.+.|||++.+.|.+...++..+++.+++++..
T Consensus 45 ~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~ 108 (217)
T COG0269 45 RAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKE 108 (217)
T ss_pred HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCe
Confidence 45566777778899999999877 8889999999999999887777788888888888766
No 401
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.29 E-value=4.7 Score=37.72 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCC---hHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVA-RMSD---PQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV 115 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~---~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa 115 (310)
+.++.+.+.|+++|...- ..|.. .+.. .+.++.+++.+ .+||++...-.. .+.++.+.+.|+
T Consensus 29 ~lv~~li~~Gv~gi~~~G--------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLG--------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred HHHHHHHHcCCCEEEECC--------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 679999999999984431 11111 1111 22345555555 489988754432 245677788999
Q ss_pred Ceee
Q 037779 116 DYVD 119 (310)
Q Consensus 116 d~v~ 119 (310)
|+++
T Consensus 101 d~il 104 (299)
T COG0329 101 DGIL 104 (299)
T ss_pred CEEE
Confidence 9998
No 402
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.29 E-value=3.2 Score=38.14 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=46.8
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhh--hcCCC--CCCCCh----HHHHHHHhhcCcceEeecc-ccch----HH-
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIR--AQGGV--ARMSDP----QLIKQIKSSVTIPVMAKAR-IGHF----VE- 106 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r--~~~G~--~~~~~~----~~i~~i~~~~~lPv~~kd~-i~~~----~~- 106 (310)
.+-|.-.|+.++++|++++..- |-- ...|. ...-.+ ..++.|++.++.|+++-|. ++.+ +.
T Consensus 21 tayD~~sArl~e~aG~d~i~vG-----ds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~a 95 (264)
T PRK00311 21 TAYDYPFAKLFDEAGVDVILVG-----DSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQA 95 (264)
T ss_pred eCCCHHHHHHHHHcCCCEEEEC-----HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHH
Confidence 4567788999999999998422 110 00111 111112 2345667777777444443 2322 22
Q ss_pred ---H-HHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779 107 ---A-QILEAIGVDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 107 ---~-~~~~~aGad~v~~~~~~~~~~~~~~~~~ 135 (310)
+ +.+.++||+.|.+-+.....+.++.+..
T Consensus 96 v~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~ 128 (264)
T PRK00311 96 LRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVE 128 (264)
T ss_pred HHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH
Confidence 2 3444599999985443223344444443
No 403
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=94.26 E-value=4 Score=36.88 Aligned_cols=173 Identities=10% Similarity=0.120 Sum_probs=98.4
Q ss_pred cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccc----hHHHHHHHHcC
Q 037779 41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGH----FVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~----~~~~~~~~~aG 114 (310)
+..+.+..+.+.+.| .+++. = .|+-.+ +.|. ..-.+.+++++.. .+-||.+...-.+ .+++..+.+.|
T Consensus 11 DtAd~~ei~~~~~~g~i~GvT-T--NPsll~-k~g~--~~~~~~~~~i~~~~~~~~vs~EV~~~d~~~m~~eA~~l~~~~ 84 (236)
T TIGR02134 11 DGANLEEMVKFSTHPYVKGFT-T--NPSLMR-KAGI--VDYEAFAHEALAQITDLPISFEVFADDLDEMEKEARYIASWG 84 (236)
T ss_pred eCCCHHHHHHHHhCCCeeEEe-C--CHHHHH-hcCC--CCHHHHHHHHHHHccCCcEEEEEecCCHHHHHHHHHHHHhcC
Confidence 456678888888877 46762 2 223222 2231 1124566676443 3457766543332 24566667777
Q ss_pred CCeee-ecCCCC----hhHHHHHHHhcCCCCcEEee-cCCHHHHHHH---HHhC-CCEEEEe-cCCCCCchHHHHHHHHH
Q 037779 115 VDYVD-ESEVLT----PADEENHINKHNFRVPFVCG-CRNLGESLRR---IREG-AAMIRTK-GEAGTGNIVEAVRHVRS 183 (310)
Q Consensus 115 ad~v~-~~~~~~----~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a---~~~G-ad~I~v~-g~~~~~~~~~~~~~~~~ 183 (310)
-+.++ ++.... --..++.+.+++ +.+-+. +.|+.++..+ +..| ++|+.+. |+...
T Consensus 85 ~nv~VKIP~T~~~G~~~l~ai~~L~~~G--I~vn~T~vfs~~Qa~~aa~A~~aG~a~yispfvgR~dd------------ 150 (236)
T TIGR02134 85 NNVNVKIPVTNTKGESTGPLIQKLSADG--ITLNVTALTTIEQVEKVCQSFTDGVPGIVSVFAGRIAD------------ 150 (236)
T ss_pred CCeEEEECCcCcccchHHHHHHHHHHCC--CcEEeehcCCHHHHHHHHHHHhCCCCeEEEEecchhhh------------
Confidence 66555 553321 134455565544 444443 6788888764 4589 6999876 44210
Q ss_pred hhcceecccccCchhHHhhhccCCCcHHHHHHHHh----cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 184 VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 184 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~----~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
...| +..++..+.+ ..+..|+ ..-+.++.++.++..+|||.+-+.-.+++
T Consensus 151 ----------~g~D-----------~~~~i~~i~~i~~~~~~tkIL---aAS~R~~~~v~~a~~~Gad~vTvp~~v~~ 204 (236)
T TIGR02134 151 ----------TGVD-----------PEPHMREALEIVAQKPGVELL---WASPRELFNIIQADRIGCDIITCAHDILA 204 (236)
T ss_pred ----------cCCC-----------cHHHHHHHHHHHHhCCCcEEE---EEccCCHHHHHHHHHcCCCEEECCHHHHH
Confidence 0111 2233333322 2234453 46788999999999999999999876665
No 404
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=94.23 E-value=3 Score=38.90 Aligned_cols=88 Identities=25% Similarity=0.364 Sum_probs=50.0
Q ss_pred ceeeecCCccc---cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCC---ChHHHHHHHhhcCcceEee--
Q 037779 30 LAQMLRGGVIM---DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV---ARMS---DPQLIKQIKSSVTIPVMAK-- 98 (310)
Q Consensus 30 ~~~~l~~g~i~---~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~---~~~~i~~i~~~~~lPv~~k-- 98 (310)
+.++|..+.+. .+.|+=-|+.++++|++++..-- -...+..|- ..+. ..+.+++|.+.+++||++-
T Consensus 7 lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss---~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d 83 (290)
T TIGR02321 7 LRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSG---FELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADID 83 (290)
T ss_pred HHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECH---HHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECC
Confidence 44555554443 23455668999999999982110 001110111 0111 1334567778889999985
Q ss_pred ccccc----hHHHHHHHHcCCCeeee
Q 037779 99 ARIGH----FVEAQILEAIGVDYVDE 120 (310)
Q Consensus 99 d~i~~----~~~~~~~~~aGad~v~~ 120 (310)
+..+. ...++.+.++|+.++++
T Consensus 84 ~GyG~~~~v~~tV~~~~~aGvagi~I 109 (290)
T TIGR02321 84 TGFGNAVNVHYVVPQYEAAGASAIVM 109 (290)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEE
Confidence 23332 23467888899999884
No 405
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=94.21 E-value=1.8 Score=41.03 Aligned_cols=69 Identities=28% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
+.|+++.+.||..+..+ +-.+. .|.....-.+.++.|++.+++++.+..+.-+.++++.+.++|+|+..
T Consensus 91 e~Ak~ak~~Ga~r~c~~----aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~yn 159 (335)
T COG0502 91 EAAKKAKAAGATRFCMG----AAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYN 159 (335)
T ss_pred HHHHHHHHcCCceEEEE----EeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhhee
Confidence 67999999998765333 11111 11100111345667777788999888776677889999999999985
No 406
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.19 E-value=4.7 Score=37.36 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCCe
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVDY 117 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad~ 117 (310)
+.++.+.+.|++++..+. ..+-...+... +.++.+.+.+ ++||++....+. .+.++.+.++|+|+
T Consensus 25 ~l~~~l~~~Gv~gi~v~G-------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 25 AHVEWLLSYGAAALFAAG-------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHHHHHcCCCEEEECc-------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence 679999999999984431 01101112222 2344444444 589998754332 24567778899999
Q ss_pred eee-cCC---CChhHHHHHHHh
Q 037779 118 VDE-SEV---LTPADEENHINK 135 (310)
Q Consensus 118 v~~-~~~---~~~~~~~~~~~~ 135 (310)
+.. +.. .+.+.+.+.++.
T Consensus 98 v~~~pP~y~~~~~~~i~~~f~~ 119 (289)
T cd00951 98 ILLLPPYLTEAPQEGLYAHVEA 119 (289)
T ss_pred EEECCCCCCCCCHHHHHHHHHH
Confidence 873 221 233455555543
No 407
>PRK02227 hypothetical protein; Provisional
Probab=94.17 E-value=4.2 Score=36.74 Aligned_cols=144 Identities=21% Similarity=0.173 Sum_probs=75.7
Q ss_pred chHHHHHHHHcCCCeeee--c----CCCChhHHHHHHHh-cCCCCcEEeecCC----HHH----HHHHHHhCCCEEEEec
Q 037779 103 HFVEAQILEAIGVDYVDE--S----EVLTPADEENHINK-HNFRVPFVCGCRN----LGE----SLRRIREGAAMIRTKG 167 (310)
Q Consensus 103 ~~~~~~~~~~aGad~v~~--~----~~~~~~~~~~~~~~-~~~~l~v~~~v~t----~~e----a~~a~~~Gad~I~v~g 167 (310)
+.+++..+.+.|||.|.. + -.-.++..++.+.. .+...++-+.+-+ +.. +..+...|+|||++.-
T Consensus 9 ~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl 88 (238)
T PRK02227 9 NLEEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVGL 88 (238)
T ss_pred CHHHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcC
Confidence 347888999999999973 2 11234566666655 3333555444332 212 2334457999999952
Q ss_pred CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEE--cc----CCCCCHHHHHH
Q 037779 168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHF--AA----GGVATPADAAM 240 (310)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~i--a~----GGI~t~~di~~ 240 (310)
... .+..++++..+ ...+.++.. .+..+|+. +. |.+. +..+..
T Consensus 89 ~~~-~~~~~~~~~~~----------------------------~v~~a~~~~~~~~~vVav~yaD~~r~~~~~-~~~l~~ 138 (238)
T PRK02227 89 YGG-KTAEEAVEVMK----------------------------AVVRAVKDLDPGKIVVAAGYADAHRVGSVS-PLSLPA 138 (238)
T ss_pred CCC-CcHHHHHHHHH----------------------------HHHHhhhhcCCCCeEEEEEecccccccCCC-hHHHHH
Confidence 211 12112221111 011112211 12333321 22 3453 555555
Q ss_pred HH-HcCCCEEEEccccccCCCH-----HHHHHHHHHHHHcCC
Q 037779 241 MM-QLGCDGVFVGSGVFKSGDP-----VRRARAIVQAVTNYS 276 (310)
Q Consensus 241 ~~-~~GadgV~VGsai~~~~dp-----~~~~~~~~~~~~~~~ 276 (310)
+. +.|++++|+=|+.=..... ...+++|.+..+++.
T Consensus 139 ~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 139 IAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHG 180 (238)
T ss_pred HHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcc
Confidence 44 6899999998877665543 346677777776543
No 408
>PLN02411 12-oxophytodienoate reductase
Probab=94.11 E-value=0.1 Score=50.71 Aligned_cols=54 Identities=22% Similarity=0.197 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 037779 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~ 267 (310)
.+.+.+++..++|| |+.||| +++++.++++.| ||.|.+|++++..+|....+++
T Consensus 303 ~~a~~ik~~v~~pv--i~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 303 QLMRTLRRAYQGTF--MCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred HHHHHHHHHcCCCE--EEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence 35567777778899 568999 689999999988 9999999999998887655533
No 409
>PRK06256 biotin synthase; Validated
Probab=94.04 E-value=5.5 Score=37.59 Aligned_cols=204 Identities=16% Similarity=0.182 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCcEEEec--ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779 46 EQARIAEEAGACAVMAL--ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E 122 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l--~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~ 122 (310)
+.++.+.+.|+..+... ..-|... .+ ..-.+.++.+++..++.+.+.....+.+.++.+.++|++.+... +
T Consensus 98 ~~~~~~~~~g~~~~~l~~~g~~p~~~-~~-----~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lE 171 (336)
T PRK06256 98 EAAKEAIEEGAGTFCIVASGRGPSGK-EV-----DQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHNLE 171 (336)
T ss_pred HHHHHHHHCCCCEEEEEecCCCCCch-HH-----HHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecCCc
Confidence 45777777888765322 0001100 00 00134566666655666655544445578889999999998632 2
Q ss_pred CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHH----HHhCCCEEE--EecCCCC-CchHHHHHHHHHhhcceecccccC
Q 037779 123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRR----IREGAAMIR--TKGEAGT-GNIVEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a----~~~Gad~I~--v~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 195 (310)
. + ++..+.+. ..++.++..++ .+.|..+.. +.|...+ ....+.+++++++..+...+..+.
T Consensus 172 t-s-~~~~~~i~----------~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~ 239 (336)
T PRK06256 172 T-S-RSYFPNVV----------TTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLN 239 (336)
T ss_pred c-C-HHHHhhcC----------CCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccc
Confidence 2 2 23332221 12455544333 345543221 1122111 123456666666666522222211
Q ss_pred c-hhH-HhhhccCCCcHHHHHHHHhc----CCCCEEEEccCCC-CCHHHHH-HHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779 196 D-DEV-FTFAKNIAAPYDLVMQTKQL----GRLPVVHFAAGGV-ATPADAA-MMMQLGCDGVFVGSGVFKSGDPVRRARA 267 (310)
Q Consensus 196 ~-d~~-~~~~~~~~~~~~l~~~i~~~----~~iPVv~ia~GGI-~t~~di~-~~~~~GadgV~VGsai~~~~dp~~~~~~ 267 (310)
+ .++ +. ......+.+.++.+.-. .+..|. + +||= ....+.. ..+ +||+++++|..++...++...=.+
T Consensus 240 P~pGT~l~-~~~~~~~~e~l~~ia~~Rl~~p~~~I~-~-~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~~g~~~~~d~~ 315 (336)
T PRK06256 240 PIPGTPLE-NHPELTPLECLKTIAIFRLINPDKEIR-I-AGGREVNLRSLQPLGL-GGANSVIVGNYLTTVGQPATADLD 315 (336)
T ss_pred cCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCeeE-e-cCchhhhchhhHHHHh-ccCceeeECCcccCCCCChHHHHH
Confidence 1 010 00 00112245555444321 234443 3 4553 2334443 334 699999999999998887665555
Q ss_pred HHHH
Q 037779 268 IVQA 271 (310)
Q Consensus 268 ~~~~ 271 (310)
+++.
T Consensus 316 ~~~~ 319 (336)
T PRK06256 316 MIED 319 (336)
T ss_pred HHHH
Confidence 5544
No 410
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=94.04 E-value=2.1 Score=40.34 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=74.6
Q ss_pred CCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779 138 FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK 217 (310)
Q Consensus 138 ~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~ 217 (310)
.|+.++.+.-+...+....+.++.+.++-.. ....+.+++.+.
T Consensus 102 ~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~-------------------------------------E~~~~plik~iA 144 (347)
T COG2089 102 RGIIFFSSPFDLTAVDLLESLNPPAYKIASG-------------------------------------EINDLPLIKYIA 144 (347)
T ss_pred cCeEEEecCCCHHHHHHHHhcCCCeEEecCc-------------------------------------cccChHHHHHHH
Confidence 5788888888888888888899988887411 012456777777
Q ss_pred hcCCCCEEEEccCCCCCHHHHHHHH----HcCCCEEEEccccccCCCHHH--HHHHHHHHHHcCCChhhHHhhhhccCCc
Q 037779 218 QLGRLPVVHFAAGGVATPADAAMMM----QLGCDGVFVGSGVFKSGDPVR--RARAIVQAVTNYSDPDVLAEVSCGLGEA 291 (310)
Q Consensus 218 ~~~~iPVv~ia~GGI~t~~di~~~~----~~GadgV~VGsai~~~~dp~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (310)
+. ..|+ |.+-|+.+.+++.+++ +.|.-.+++=.+...-+-|.+ -++.+...-..+.++-++-.++..+-.+
T Consensus 145 ~~-~kPi--IlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~g~~a~ 221 (347)
T COG2089 145 KK-GKPI--ILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLGILAP 221 (347)
T ss_pred hc-CCCE--EEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCccchhHH
Confidence 64 3599 5589999999987665 468886665555555444443 2233333333334555554554444444
Q ss_pred eeccccc
Q 037779 292 MVGIDLN 298 (310)
Q Consensus 292 ~~~~~~~ 298 (310)
+..+.|-
T Consensus 222 l~AvALG 228 (347)
T COG2089 222 LAAVALG 228 (347)
T ss_pred HHHHHhc
Confidence 4433333
No 411
>PLN02561 triosephosphate isomerase
Probab=94.00 E-value=0.68 Score=42.29 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=28.2
Q ss_pred CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~ 257 (310)
++|| +..|+| +++++.+++. .|+||++||++=..
T Consensus 204 ~i~I--LYGGSV-~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 204 TTRI--IYGGSV-TGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred cceE--EEeCCc-CHHHHHHHhcCCCCCeEEEehHhhH
Confidence 5788 579999 5889888775 69999999998776
No 412
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.98 E-value=0.19 Score=46.89 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=60.1
Q ss_pred ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc----hh-----------h----hcCCCC-CCCChHHHHHH
Q 037779 28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA----DI-----------R----AQGGVA-RMSDPQLIKQI 87 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~----d~-----------r----~~~G~~-~~~~~~~i~~i 87 (310)
.|+.++|+.+. ....++++.+.++|+++|+..|..+. |. + .++|.. ....++.++++
T Consensus 169 ~Pv~vKl~~~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~ 245 (299)
T cd02940 169 IPVIAKLTPNI---TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQI 245 (299)
T ss_pred CCeEEECCCCc---hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHH
Confidence 56777776422 11248899999999999965551110 00 1 111221 11226788899
Q ss_pred Hhhc--CcceEeeccccchHHHHHHHHcCCCeee
Q 037779 88 KSSV--TIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 88 ~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
++.+ ++||+....+.+.+++..+..+||+.|.
T Consensus 246 ~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 246 ARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 9988 8999999999888888777789999987
No 413
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.94 E-value=3.7 Score=35.21 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=85.8
Q ss_pred CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe-ecccc---chHHH--HHHHHcCCCe
Q 037779 44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA-KARIG---HFVEA--QILEAIGVDY 117 (310)
Q Consensus 44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~-kd~i~---~~~~~--~~~~~aGad~ 117 (310)
+.+..+.+.+.-.+.+..| +.+ .++-.+.++.+++. +.-+.+ -|.+. +.+.+ .+....++|+
T Consensus 12 ~~~~le~~les~~~~vflL-----~~~------i~~ik~ivk~lK~~-gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdG 79 (181)
T COG1954 12 DNKDLEKALESESQYVFLL-----TGH------ILNIKEIVKKLKNR-GKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDG 79 (181)
T ss_pred hHHHHHHHhcCCCeEEEEE-----ech------hhhHHHHHHHHHhC-CcEEEEEeHHhcccCCchHHHHHHHHhccCCe
Confidence 3467888888888877555 111 01112334444433 333333 34442 22222 2445577888
Q ss_pred eeecCCCChhHHHHHHHhcCCC---CcEEeecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779 118 VDESEVLTPADEENHINKHNFR---VPFVCGCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 118 v~~~~~~~~~~~~~~~~~~~~~---l~v~~~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
++.+ -...+...++++.. -.++++....+-.. ...+.++|+|-+. |.
T Consensus 80 IIST----k~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL-------------------------PG 130 (181)
T COG1954 80 IIST----KSNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL-------------------------PG 130 (181)
T ss_pred eEEc----cHHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc-------------------------Cc
Confidence 8643 23445555554432 13444544444332 2334566666553 21
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~ 250 (310)
.-.+.++.+.+..++|| ||+|=|.+.|++.+++++||-+|-
T Consensus 131 --------------v~Pkvi~~i~~~t~~pi--IAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 131 --------------VMPKVIKEITEKTHIPI--IAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred --------------ccHHHHHHHHHhcCCCE--EeccccccHHHHHHHHHhCcEEEe
Confidence 12456788888788999 678889999999999999998876
No 414
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.92 E-value=4.6 Score=36.33 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES 121 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~ 121 (310)
++++.+.+.|++.|-..-+.+... . ..+....+.++.+++.. +.++.+-..-+ .+.++.+.++|++.|.+.
T Consensus 23 ~i~~~L~~~GV~~IEvg~~~~~~~--~--p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 23 EIAEALDEAGVDSIEVGSGASPKA--V--PQMEDDWEVLRAIRKLVPNVKLQALVRNR-EKGIERALEAGVDEVRIF 94 (265)
T ss_pred HHHHHHHHcCCCEEEeccCcCccc--c--ccCCCHHHHHHHHHhccCCcEEEEEccCc-hhhHHHHHhCCcCEEEEE
Confidence 679999999999872221111100 0 01122356677777765 45554432222 357888999999998743
No 415
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.90 E-value=1.2 Score=41.50 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=75.4
Q ss_pred CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh
Q 037779 139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ 218 (310)
Q Consensus 139 ~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~ 218 (310)
+..++.++++.-.++.+.+.|.+.+.+.|...... . .-++.. +.+ .+..-.+.++.|.+
T Consensus 17 ~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~---------~-----lG~PD~---g~l----~~~e~~~~~~~I~~ 75 (292)
T PRK11320 17 KPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAA---------S-----LGLPDL---GIT----TLDDVLIDVRRITD 75 (292)
T ss_pred CcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhH---------h-----cCCCCC---CCC----CHHHHHHHHHHHHh
Confidence 46778889999999999999999998875421100 0 001110 000 01112345555666
Q ss_pred cCCCCEEEEccCCCCCHHHH----HHHHHcCCCEEEEccccc-------cC---CCHHHHHHHHHHHHHcCCCh
Q 037779 219 LGRLPVVHFAAGGVATPADA----AMMMQLGCDGVFVGSGVF-------KS---GDPVRRARAIVQAVTNYSDP 278 (310)
Q Consensus 219 ~~~iPVv~ia~GGI~t~~di----~~~~~~GadgV~VGsai~-------~~---~dp~~~~~~~~~~~~~~~~~ 278 (310)
..++||++-++.|-+++.++ +++.++|+.|+.+=--.+ .. -.+.++++.+..+..+..++
T Consensus 76 ~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~ 149 (292)
T PRK11320 76 ACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDP 149 (292)
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCC
Confidence 67899999999999999885 666688999999944321 11 13456677777776665444
No 416
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=93.90 E-value=0.6 Score=44.59 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=29.5
Q ss_pred EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779 224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
+.+.++||| +++++.++.++ +|.+.||+.++.++
T Consensus 262 v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a~ 295 (343)
T PRK08662 262 VKIFVSGGL-DPERIRELRDV-VDGFGVGTYISFAP 295 (343)
T ss_pred eEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCCC
Confidence 444789999 69999999999 99999999998743
No 417
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.86 E-value=0.61 Score=43.97 Aligned_cols=79 Identities=33% Similarity=0.470 Sum_probs=60.8
Q ss_pred cCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779 35 RGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 35 ~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~ 111 (310)
+.|+.. .| .|+..++++.+.|+.+++-+ +.-+- .|- -.++++.++.+++..++||++...|+..+++..+.
T Consensus 195 ~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl---~~pIG--sg~-gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Am 268 (326)
T PRK11840 195 KEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL---GAPIG--SGL-GIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAM 268 (326)
T ss_pred HCCCEEEEEeCCCHHHHHHHHhcCCEEEeec---ccccc--CCC-CCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHH
Confidence 556655 34 45899999999999777533 22121 122 24489999999999999999999999888899999
Q ss_pred HcCCCeee
Q 037779 112 AIGVDYVD 119 (310)
Q Consensus 112 ~aGad~v~ 119 (310)
+.|+|+|+
T Consensus 269 elGadgVL 276 (326)
T PRK11840 269 ELGCDGVL 276 (326)
T ss_pred HcCCCEEE
Confidence 99999998
No 418
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=93.86 E-value=5.5 Score=37.03 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIG 114 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aG 114 (310)
.+.++.+.+.|++++..+. ..|. ..+...+ .++.+.+.+ ++||++...-.. .+.++.+.++|
T Consensus 24 ~~lv~~~~~~Gv~gi~v~G--------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGG--------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred HHHHHHHHHcCCCEEEECc--------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 3679999999999984431 1111 1122222 334444433 589987754432 23556778899
Q ss_pred CCeee
Q 037779 115 VDYVD 119 (310)
Q Consensus 115 ad~v~ 119 (310)
||.+.
T Consensus 96 ad~v~ 100 (294)
T TIGR02313 96 ADAAM 100 (294)
T ss_pred CCEEE
Confidence 99987
No 419
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.78 E-value=6.1 Score=38.04 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
+.|+.+.+.|+..+--.- ...|.+..|.|.. ......+++.++..++|++.-.+ +...++.+.+. +|.+-+. ..
T Consensus 136 ~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~-~e~l~~L~~~~~~~Gl~~~t~v~--d~~~~~~l~~~-vd~lkI~s~~ 211 (360)
T PRK12595 136 AVAKALKAKGLKLLRGGAFKPRTSPYDFQGLG-VEGLKILKQVADEYGLAVISEIV--NPADVEVALDY-VDVIQIGARN 211 (360)
T ss_pred HHHHHHHHcCCcEEEccccCCCCCCccccCCC-HHHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHHh-CCeEEECccc
Confidence 668888888887651110 1112222333332 13345667778888999977533 33566777778 8887643 33
Q ss_pred CChhHHHHHHHhcCCCCcEEeec---CCHHHHHHHHH----hCC-CEEEEe-cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779 124 LTPADEENHINKHNFRVPFVCGC---RNLGESLRRIR----EGA-AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v---~t~~ea~~a~~----~Ga-d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (310)
.....+++.+.+ .+.+++++. .|++|...|++ .|. +++-.+ |.. .+++.
T Consensus 212 ~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s--------------------~yp~~ 269 (360)
T PRK12595 212 MQNFELLKAAGR--VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR--------------------TYEKA 269 (360)
T ss_pred ccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccC--------------------CCCCC
Confidence 445566666654 457777753 47787776653 455 454443 221 11111
Q ss_pred CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc--CCCCC--HHHHHHHHHcCCCEEEEcccc
Q 037779 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~--GGI~t--~~di~~~~~~GadgV~VGsai 255 (310)
.. ...+...+..+++..++||+.-++ +|-.. +.-...++.+||||+++=.-+
T Consensus 270 ~~---------~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 270 TR---------NTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CC---------CCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 11 112566677777766789853111 22100 123455678999999998877
No 420
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=0.9 Score=44.08 Aligned_cols=155 Identities=21% Similarity=0.321 Sum_probs=93.3
Q ss_pred HHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHHHHH----HhhcCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779 48 ARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLIKQI----KSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120 (310)
Q Consensus 48 a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~ 120 (310)
|+.+. -.+.++ ++| .||++ ++..-|..++.+++.+-.| .+...+|+.++.++-.
T Consensus 100 A~lv~-nDvsgi-diN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~----------------- 160 (477)
T KOG2334|consen 100 AKLVD-NDVSGI-DINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLD----------------- 160 (477)
T ss_pred HHHhh-cccccc-cccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecC-----------------
Confidence 44443 456666 677 66653 3333367788888876544 4556799999877531
Q ss_pred cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 200 (310)
+.++ |++-+.+..+.|...+.++++..... +
T Consensus 161 ----s~ed-------------------tL~lv~ri~~tgi~ai~vh~rt~d~r-------------------~------- 191 (477)
T KOG2334|consen 161 ----SKED-------------------TLKLVKRICATGIAAITVHCRTRDER-------------------N------- 191 (477)
T ss_pred ----Cccc-------------------HHHHHHHHHhcCCceEEEEeeccccC-------------------C-------
Confidence 1111 12223344456777888886533221 1
Q ss_pred hhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCC---HHHHHHHHH-cCCCEEEEccccccCCC---------HHHHHH
Q 037779 201 TFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVAT---PADAAMMMQ-LGCDGVFVGSGVFKSGD---------PVRRAR 266 (310)
Q Consensus 201 ~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t---~~di~~~~~-~GadgV~VGsai~~~~d---------p~~~~~ 266 (310)
......+.++.+....+ +|| |++||..+ ..|+....+ .|+++|++.++-..++. ..+.++
T Consensus 192 ----~~~~~~~~i~~i~~~~~~V~v--i~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG~~~~~~~~~ 265 (477)
T KOG2334|consen 192 ----QEPATKDYIREIAQACQMVPV--IVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREEGCLSEKEVIR 265 (477)
T ss_pred ----CCCCCHHHHHHHHHHhccceE--eeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeecCCchHHHHHH
Confidence 11234556666666554 899 78999988 556666664 69999999987666442 245666
Q ss_pred HHHHHHHcCC
Q 037779 267 AIVQAVTNYS 276 (310)
Q Consensus 267 ~~~~~~~~~~ 276 (310)
.|.+.-.+|+
T Consensus 266 ~fl~~a~~~d 275 (477)
T KOG2334|consen 266 EFLRLAVQYD 275 (477)
T ss_pred HHHHHHHHHh
Confidence 6666544443
No 421
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.65 E-value=0.39 Score=45.38 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=65.4
Q ss_pred cccceeeecCCccccC--CC-HHHHHHHHHcCCcEEEecccccchhhhcCCCC----CCCChHHHHHHHhhc-CcceEee
Q 037779 27 KVGLAQMLRGGVIMDV--VT-PEQARIAEEAGACAVMALERVPADIRAQGGVA----RMSDPQLIKQIKSSV-TIPVMAK 98 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~~--~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~----~~~~~~~i~~i~~~~-~lPv~~k 98 (310)
..|+.+++|.|+-... .+ .++++.++++|+++|.+.-+... ...+.|.. ...+.+.++++++.+ ++||+.+
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~-~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N 201 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW-LSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN 201 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh-hcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE
Confidence 3588999999874322 11 37799999999999843312110 01112211 011456788888877 8999999
Q ss_pred ccccchHHHHHHHHcCCCeeeec-CCCChhHHHHHHH
Q 037779 99 ARIGHFVEAQILEAIGVDYVDES-EVLTPADEENHIN 134 (310)
Q Consensus 99 d~i~~~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~ 134 (310)
..+.+.++++.+.+ |+|.|-+. ..+..+.+...+.
T Consensus 202 GdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~ 237 (318)
T TIGR00742 202 GGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVD 237 (318)
T ss_pred CCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHH
Confidence 88877777766664 99998743 2233334444443
No 422
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=93.57 E-value=9 Score=38.51 Aligned_cols=82 Identities=20% Similarity=0.069 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLT 125 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~~ 125 (310)
+.|+.+.+.||+.| +++..++.+ +..+ -...++.+++.+++|+++-.+ +.+.++.+.++||+.|.......
T Consensus 169 ~~A~~~~~~GADII-DIG~~st~p----~~~~--v~~~V~~l~~~~~~pISIDT~--~~~v~eaAL~aGAdiINsVs~~~ 239 (499)
T TIGR00284 169 GLAARMERDGADMV-ALGTGSFDD----DPDV--VKEKVKTALDALDSPVIADTP--TLDELYEALKAGASGVIMPDVEN 239 (499)
T ss_pred HHHHHHHHCCCCEE-EECCCcCCC----cHHH--HHHHHHHHHhhCCCcEEEeCC--CHHHHHHHHHcCCCEEEECCccc
Confidence 67999999999998 775222211 0000 023456666666889877655 33667788889999987322223
Q ss_pred hhHHHHHHHhc
Q 037779 126 PADEENHINKH 136 (310)
Q Consensus 126 ~~~~~~~~~~~ 136 (310)
.+++...+..+
T Consensus 240 ~d~~~~l~a~~ 250 (499)
T TIGR00284 240 AVELASEKKLP 250 (499)
T ss_pred hhHHHHHHHHc
Confidence 34444444443
No 423
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=93.56 E-value=2.6 Score=38.07 Aligned_cols=186 Identities=19% Similarity=0.194 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~ 123 (310)
.+.|..++.+||++|..- + ..|.|.- ..++++.+++.+..|+-+-... +.+..+.+.+.--|.+. .++.
T Consensus 25 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~L~~~~~~~lNlE~a~-t~e~~~ia~~~kP~~vtLVPE~ 94 (239)
T PF03740_consen 25 VEAARIAEEAGADGITVH-L-REDRRHI-------QDRDVRRLRELVKTPLNLEMAP-TEEMVDIALKVKPDQVTLVPEK 94 (239)
T ss_dssp HHHHHHHHHTT-SEEEEE-B--TT-SSS--------HHHHHHHHHH-SSEEEEEEES-SHHHHHHHHHH--SEEEEE--S
T ss_pred HHHHHHHHHcCCCEEEec-c-CCCcCcC-------CHHHHHHHHHHcccCEEeccCC-CHHHHHHHHhCCcCEEEECCCC
Confidence 378999999999998432 1 1244433 3788999999988885332211 23556777888888765 2211
Q ss_pred ---------CC----hh---HHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779 124 ---------LT----PA---DEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD 187 (310)
Q Consensus 124 ---------~~----~~---~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~ 187 (310)
+. .. .+++.++..+..+-++++. ++++++.+.+.|+|+|=.+ ||.+..+..
T Consensus 95 r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP-~~~qi~~A~~~Gad~VELh----TG~yA~a~~-------- 161 (239)
T PF03740_consen 95 REELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP-DPEQIEAAKELGADRVELH----TGPYANAFD-------- 161 (239)
T ss_dssp GGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S--HHHHHHHHHTT-SEEEEE----THHHHHHSS--------
T ss_pred CCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC-CHHHHHHHHHcCCCEEEEe----hhHhhhhcC--------
Confidence 11 12 3445555555555666664 5778888999999999876 222211100
Q ss_pred eecccccCchhHHhhhccCCCcHHHHHHHHh------cCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC-
Q 037779 188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ------LGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG- 259 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~------~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~- 259 (310)
..+ ....+++..+.+ ...+-| =|+.|+ +.+++..+.+. +..-+-+|-+|+..-
T Consensus 162 -------~~~---------~~~~ell~~l~~aa~~a~~lGL~V--nAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia~Al 222 (239)
T PF03740_consen 162 -------DAE---------EAEEELLERLRDAARYAHELGLGV--NAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIARAL 222 (239)
T ss_dssp -------HHH---------HHHHHHHHHHHHHHHHHHHTT-EE--EEETT---TTTHHHHHTSTTEEEEEE-HHHHHHHH
T ss_pred -------CHH---------HHHHHHHHHHHHHHHHHHHcCCEE--ecCCCC-CHHHHHHHHhCCCceEEecCHHHHHHHH
Confidence 000 000111122211 134555 578999 58999999875 899999999887521
Q ss_pred --CHHHHHHHHHHHH
Q 037779 260 --DPVRRARAIVQAV 272 (310)
Q Consensus 260 --dp~~~~~~~~~~~ 272 (310)
-..++++++++.+
T Consensus 223 ~~Gl~~aV~~m~~~~ 237 (239)
T PF03740_consen 223 FVGLEEAVREMKELM 237 (239)
T ss_dssp HH-HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHh
Confidence 1234555555544
No 424
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=93.44 E-value=0.89 Score=40.72 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=45.4
Q ss_pred CCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee
Q 037779 55 GACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 55 Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
|...+ .| -+.+|.....+++.++.+++.+ ++|+++...+.+.++++.+.++|||.|.
T Consensus 149 g~~~v-Yl-------E~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VV 206 (223)
T TIGR01768 149 GMPII-YL-------EAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIV 206 (223)
T ss_pred CCcEE-EE-------EecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEE
Confidence 56655 55 1334444456789999999998 9999999999888899999999999987
No 425
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.41 E-value=0.43 Score=42.28 Aligned_cols=80 Identities=26% Similarity=0.263 Sum_probs=55.0
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD- 119 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~- 119 (310)
.+.+++.++.+.+.|++.+..-+.-.+.... .......+.++++++.+++|+++...+.+.+.++.+.++|||.+.
T Consensus 129 ~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~---~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 129 DISTLEEALNAAKLGFDIIGTTLSGYTEETA---KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred ECCCHHHHHHHHHcCCCEEEccCcccccccc---CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4456788899999999988321100011000 011234688999999889999999888777788888899999998
Q ss_pred ecCC
Q 037779 120 ESEV 123 (310)
Q Consensus 120 ~~~~ 123 (310)
.+..
T Consensus 206 Gsal 209 (219)
T cd04729 206 GSAI 209 (219)
T ss_pred chHH
Confidence 4443
No 426
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.39 E-value=1.3 Score=44.45 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec-cccchHHHHHHHHcCCCeeee--c
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA-RIGHFVEAQILEAIGVDYVDE--S 121 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd-~i~~~~~~~~~~~aGad~v~~--~ 121 (310)
.+.++.+.++|++.| .+ |.. .|.. ....+.++.+++....++.+.. -+.+.+.++.+.++|||+|.. .
T Consensus 244 ~~ra~~Lv~aGvd~i-~v-----d~a--~g~~-~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g 314 (502)
T PRK07107 244 AERVPALVEAGADVL-CI-----DSS--EGYS-EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIG 314 (502)
T ss_pred HHHHHHHHHhCCCeE-ee-----cCc--cccc-HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCC
Confidence 578999999999998 33 211 1110 0115678888887653333332 233557888899999999752 1
Q ss_pred -------C-C--CChh------HHHHHH----HhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEe
Q 037779 122 -------E-V--LTPA------DEENHI----NKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 122 -------~-~--~~~~------~~~~~~----~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~ 166 (310)
. . ..++ ++.+.. ++.+.+++++++ +++.-++.+|+.+|||.+.+.
T Consensus 315 ~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 315 GGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred CCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 0 1 1111 222221 112333788885 899999999999999999885
No 427
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.39 E-value=1.5 Score=36.93 Aligned_cols=109 Identities=23% Similarity=0.218 Sum_probs=64.0
Q ss_pred HHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC-C
Q 037779 48 ARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV-L 124 (310)
Q Consensus 48 a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~-~ 124 (310)
++.+.++|+++| .++ ..+...+ + ..+.++++++.. ++|+.++...........+.+.|+|++..... .
T Consensus 77 a~~~~~~g~d~v-~l~~~~~~~~~-~-------~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 77 AAAARAAGADGV-EIHGAVGYLAR-E-------DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGG 147 (200)
T ss_pred HHHHHHcCCCEE-EEeccCCcHHH-H-------HHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcC
Confidence 568899999998 442 1110000 0 155677888776 78888875443211111267799999873211 0
Q ss_pred -----Ch----hHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779 125 -----TP----ADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK 166 (310)
Q Consensus 125 -----~~----~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~ 166 (310)
.. ......+. ...++++++ ++++.+++.++.+.|||.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 148 GGGGRDAVPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred CCCCccCchhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 01 12222222 234555555 4888899999998999998773
No 428
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=93.33 E-value=5.9 Score=35.69 Aligned_cols=143 Identities=21% Similarity=0.209 Sum_probs=77.4
Q ss_pred chHHHHHHHHcCCCeeee--c----CCCChhHHHHHHHh-cCCCCcEEeecCCH----H----HHHHHHHhCCCEEEEec
Q 037779 103 HFVEAQILEAIGVDYVDE--S----EVLTPADEENHINK-HNFRVPFVCGCRNL----G----ESLRRIREGAAMIRTKG 167 (310)
Q Consensus 103 ~~~~~~~~~~aGad~v~~--~----~~~~~~~~~~~~~~-~~~~l~v~~~v~t~----~----ea~~a~~~Gad~I~v~g 167 (310)
+.+++..+.+.|+|.|.. + -.-.++..++.+.. ..-..++-+.+-+. . .+..+...|+|||++.
T Consensus 9 ~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvG- 87 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVG- 87 (235)
T ss_pred CHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEe-
Confidence 346888889999999972 2 11235566666665 22235555544332 1 2233445799999995
Q ss_pred CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEc------cCCCCCHHHHHH
Q 037779 168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFA------AGGVATPADAAM 240 (310)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia------~GGI~t~~di~~ 240 (310)
.....+..++++..+.+ .+.+++. .+..+|+.. .|++ +|-++..
T Consensus 88 l~g~~~~~~a~e~l~~v----------------------------~~av~~~~~~~~vVAv~yAD~~r~~~~-~p~~l~~ 138 (235)
T PF04476_consen 88 LFGCKDYDEAIEALEAV----------------------------VRAVKDFDPDKKVVAVGYADAQRVGSI-SPLDLPE 138 (235)
T ss_pred cCCCCCHHHHHHHHHHH----------------------------HHHHhhhCCCcEEEEEEecchhhhcCC-CHHHHHH
Confidence 32223333333322211 1112211 111222111 1455 4666665
Q ss_pred HH-HcCCCEEEEccccccCCCH-----HHHHHHHHHHHHcC
Q 037779 241 MM-QLGCDGVFVGSGVFKSGDP-----VRRARAIVQAVTNY 275 (310)
Q Consensus 241 ~~-~~GadgV~VGsai~~~~dp-----~~~~~~~~~~~~~~ 275 (310)
+. ++|++++|+=|+.=..... ...+.+|.+..+.+
T Consensus 139 ~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~ 179 (235)
T PF04476_consen 139 IAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAH 179 (235)
T ss_pred HHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHc
Confidence 54 7899999998877665543 45667777776654
No 429
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=93.25 E-value=4.5 Score=36.68 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=30.1
Q ss_pred HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779 239 AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273 (310)
Q Consensus 239 ~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~ 273 (310)
......|+|-++||+.|+.++||.+..++..+.+.
T Consensus 201 ~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~ 235 (240)
T COG0284 201 GEAVRAGADYIVVGRPITQAGDPVAAARAIAREIA 235 (240)
T ss_pred HHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHH
Confidence 45667899999999999999999998888777654
No 430
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.22 E-value=6.8 Score=36.11 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIG 114 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aG 114 (310)
.+.++.+.+.|++++..+. ..|. ..+...+ .++.+.+.+ ++||++...-.. .+.++.+.++|
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~G--------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVG--------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred HHHHHHHHHcCCCEEEECc--------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 3678888999999984331 0111 1122222 333344333 488887743321 24567778899
Q ss_pred CCeee
Q 037779 115 VDYVD 119 (310)
Q Consensus 115 ad~v~ 119 (310)
+|++.
T Consensus 94 ad~v~ 98 (285)
T TIGR00674 94 ADGFL 98 (285)
T ss_pred CCEEE
Confidence 99987
No 431
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=93.22 E-value=1.2 Score=42.80 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=30.1
Q ss_pred EEEccCCCCCHHHHHHHHHcC--CCEEEEccccccCC
Q 037779 225 VHFAAGGVATPADAAMMMQLG--CDGVFVGSGVFKSG 259 (310)
Q Consensus 225 v~ia~GGI~t~~di~~~~~~G--adgV~VGsai~~~~ 259 (310)
.++++||| +++++.++.+.| +|++.|||.+....
T Consensus 282 kI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~~~ 317 (352)
T PRK07188 282 KIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLKIN 317 (352)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCccEEecCcccccCc
Confidence 33789999 599999999999 79999999999864
No 432
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.13 E-value=6.6 Score=35.99 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCcEEEe-cccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMA-LERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~-l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
++|+.+.+.|+..... +.-..|.+..|.|.. ...+..++++++..++|++.-.+ +...++.+.+. +|.+-+. ..
T Consensus 43 ~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~~t~~~--d~~~~~~l~~~-~d~lkI~s~~ 118 (260)
T TIGR01361 43 ETARFVKEAGAKILRGGAFKPRTSPYSFQGLG-EEGLKLLRRAADEHGLPVVTEVM--DPRDVEIVAEY-ADILQIGARN 118 (260)
T ss_pred HHHHHHHHHHHHhccCceecCCCCCccccccH-HHHHHHHHHHHHHhCCCEEEeeC--ChhhHHHHHhh-CCEEEECccc
Confidence 5677777776663210 000001111222221 22355677788888999977544 33566667777 8877644 33
Q ss_pred CChhHHHHHHHhcCCCCcEEeec--C-CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779 124 LTPADEENHINKHNFRVPFVCGC--R-NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v--~-t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
.....+++.+.+ .+.+++++. . |++|...+++ .|. +++-.+ |. .|.+ +
T Consensus 119 ~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~--------------------~ 176 (260)
T TIGR01361 119 MQNFELLKEVGK--QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEK--------------------A 176 (260)
T ss_pred ccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCC--------------------C
Confidence 445566666654 467777764 3 7887766653 466 444444 22 2211 0
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEc--cCCCCC--HHHHHHHHHcCCCEEEEccccccCC
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFA--AGGVAT--PADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia--~GGI~t--~~di~~~~~~GadgV~VGsai~~~~ 259 (310)
.....++..+..+++..++||+..+ ++|-.. +.-...+..+||+|+++=+-+.-..
T Consensus 177 ----------~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~ 236 (260)
T TIGR01361 177 ----------TRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEK 236 (260)
T ss_pred ----------CcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 0122356667777765578995311 233111 3445567789999999988776643
No 433
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.09 E-value=7.6 Score=36.26 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCCh---HHHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDP---QLIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVD 116 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad 116 (310)
+.++.+.+.|+++|..+. ..|. ..+... +.++.+++.+ ++||++...-.. .+.++.+.++|+|
T Consensus 32 ~li~~l~~~Gv~Gi~~~G--------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAG--------GTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGAD 103 (303)
T ss_pred HHHHHHHHcCCCEEEECc--------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 679999999999984331 0111 112222 2344444444 589988654322 2455777889999
Q ss_pred eeee-cCC---CChhHHHHHHHh
Q 037779 117 YVDE-SEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~v~~-~~~---~~~~~~~~~~~~ 135 (310)
++.. +.. .+..++.+.++.
T Consensus 104 av~~~pP~y~~~~~~~i~~~f~~ 126 (303)
T PRK03620 104 GILLLPPYLTEAPQEGLAAHVEA 126 (303)
T ss_pred EEEECCCCCCCCCHHHHHHHHHH
Confidence 9873 322 233445555443
No 434
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.08 E-value=8.1 Score=37.27 Aligned_cols=45 Identities=29% Similarity=0.552 Sum_probs=33.2
Q ss_pred CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHH
Q 037779 222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQ 270 (310)
Q Consensus 222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~ 270 (310)
.|+ .+||++ +..+.++++ +|.|-+ .+|..++..+ .+.+-+++|++
T Consensus 319 ~Pv---~sgG~~-~~~v~~l~~~~G~dv~~~~GGgi~gHp~g~~ag~~a~r~ 366 (367)
T cd08205 319 LPV---PSGGMH-PGRVPELYRDYGPDVILLAGGGILGHPDGAAAGVRAFRQ 366 (367)
T ss_pred eee---ccCCCC-HHHHHHHHHHhCCcEEEEcCchhcCCCCChHHHHHHHhc
Confidence 355 579994 899999997 587754 4678898887 46767777764
No 435
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.07 E-value=1.6 Score=40.83 Aligned_cols=138 Identities=15% Similarity=0.076 Sum_probs=71.2
Q ss_pred ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhc--CCCCCCCChHHHHHHHhhc----CcceEeeccc
Q 037779 28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQ--GGVARMSDPQLIKQIKSSV----TIPVMAKARI 101 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~--~G~~~~~~~~~i~~i~~~~----~lPv~~kd~i 101 (310)
.|+.+=...|.-......+.++.++++|+.+| .++......++. .|....+..+.+++|+... +.++++.-+.
T Consensus 78 lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi-~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 78 VPVIMDADAGYGNAMSVWRATREFERVGIVGY-HLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred CCEEEECCCCCCCcHHHHHHHHHHHHcCCeEE-EEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 45555555554332222467999999999999 454111100111 1221223334455554432 2345554333
Q ss_pred c---------chHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCC--cEEeecCCH-HHHHHHHHhCCCEEEEe
Q 037779 102 G---------HFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRV--PFVCGCRNL-GESLRRIREGAAMIRTK 166 (310)
Q Consensus 102 ~---------~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l--~v~~~v~t~-~ea~~a~~~Gad~I~v~ 166 (310)
+ ..+..+.+.++|||.|..+...++.++.+..++-...+ .++..-.++ -......++|.+.+...
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~ 233 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYP 233 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEc
Confidence 2 12456788889999998665556666665555421112 122221211 13445556798888764
No 436
>PLN02858 fructose-bisphosphate aldolase
Probab=92.87 E-value=7.2 Score=44.10 Aligned_cols=174 Identities=14% Similarity=0.133 Sum_probs=104.0
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL 124 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~ 124 (310)
+.+++++.+...|.++. |.-. .+.|. .....++...+..++||.++ |.-.+++.+..+.++|-+.|-++ +.+
T Consensus 1130 vi~aAe~~~sPvIl~~~--~~~~-~~~~~---~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l 1203 (1378)
T PLN02858 1130 VVAAAEAEKSPAILQVH--PGAL-KQGGI---PLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHL 1203 (1378)
T ss_pred HHHHHHHhCCCEEEECC--ccHH-hhcCH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCC
Confidence 46777777888775552 1111 12221 11333455556678999887 33335677888888999998632 223
Q ss_pred ChhH-------HHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHH
Q 037779 125 TPAD-------EENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVE 176 (310)
Q Consensus 125 ~~~~-------~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~ 176 (310)
+.++ +++..+. .++.+=.+ .++++|+.+-. +.|+|.+.+. |..++.
T Consensus 1204 ~~eeNi~~t~~vv~~Ah~--~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~---- 1277 (1378)
T PLN02858 1204 SFTENISYTKSISSLAHS--KGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGK---- 1277 (1378)
T ss_pred CHHHHHHHHHHHHHHHHH--cCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeeccccccc----
Confidence 3332 2233332 22222111 23566766655 4578877654 332221
Q ss_pred HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC---CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~---~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs 253 (310)
++.- ...-++++++.+.+.. ++|+|.=-.+|+. .+++++++++|..-|=++|
T Consensus 1278 --------------Y~~~----------~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~KiNi~T 1332 (1378)
T PLN02858 1278 --------------YPAS----------GPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKFNVNT 1332 (1378)
T ss_pred --------------CCCC----------CCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEEEeCH
Confidence 0100 0122688899998876 7998876777884 7899999999999999999
Q ss_pred cccc
Q 037779 254 GVFK 257 (310)
Q Consensus 254 ai~~ 257 (310)
.+..
T Consensus 1333 ~~~~ 1336 (1378)
T PLN02858 1333 EVRT 1336 (1378)
T ss_pred HHHH
Confidence 7754
No 437
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.85 E-value=8 Score=35.91 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH---HHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCCe
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ---LIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVDY 117 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad~ 117 (310)
+.++.+.+.|++++..+. ..+-...+...+ .++.+.+.+ ++||++...-.. .+.++.+.++|||.
T Consensus 30 ~li~~l~~~Gv~gi~v~G-------stGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAG-------GTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHHHHhcCCCEEEECC-------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCE
Confidence 679999999999984431 001011122222 233344433 489988754322 24567778899999
Q ss_pred eee-cCC---CChhHHHHHHHh
Q 037779 118 VDE-SEV---LTPADEENHINK 135 (310)
Q Consensus 118 v~~-~~~---~~~~~~~~~~~~ 135 (310)
+.. +.. .+..++.+.++.
T Consensus 103 v~~~pP~y~~~s~~~i~~~f~~ 124 (296)
T TIGR03249 103 YLLLPPYLINGEQEGLYAHVEA 124 (296)
T ss_pred EEECCCCCCCCCHHHHHHHHHH
Confidence 873 322 233455555543
No 438
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.84 E-value=5.3 Score=37.05 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCccccccceeeecCCccccCCCHHHHHHHHH-cCCcEEEecc------cccchhhhcCCCCCCCChHHHHHHHhhc--C
Q 037779 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARIAEE-AGACAVMALE------RVPADIRAQGGVARMSDPQLIKQIKSSV--T 92 (310)
Q Consensus 22 sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~-~Ga~~I~~l~------~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~ 92 (310)
+||. ..|.+....-.+.++.+.+ .|+++|..+- ....+.| .+.++.+.+.+ +
T Consensus 13 TPf~---------~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr----------~~~~~~~~~~~~~~ 73 (293)
T PRK04147 13 TPFD---------EDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEK----------KQVLEIVAEEAKGK 73 (293)
T ss_pred CcCC---------CCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHH----------HHHHHHHHHHhCCC
Q ss_pred cceEeeccccch----HHHHHHHHcCCCeee-ec---CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEE
Q 037779 93 IPVMAKARIGHF----VEAQILEAIGVDYVD-ES---EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIR 164 (310)
Q Consensus 93 lPv~~kd~i~~~----~~~~~~~~aGad~v~-~~---~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~ 164 (310)
+||++...-... +.++.+.++|||++. .+ ...+..++.+.++. .+...+..++.
T Consensus 74 ~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~------------------va~a~~lPv~i 135 (293)
T PRK04147 74 VKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYRE------------------IIDSADNPMIV 135 (293)
T ss_pred CCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHH------------------HHHhCCCCEEE
Q ss_pred EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH---
Q 037779 165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM--- 241 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~--- 241 (310)
.|-+..++. ..+.+.+.++.+..++--+-.++|.+....++.+.
T Consensus 136 Yn~P~~tg~---------------------------------~l~~~~l~~L~~~pnvvgiK~s~~d~~~~~~~~~~~~~ 182 (293)
T PRK04147 136 YNIPALTGV---------------------------------NLSLDQFNELFTLPKVIGVKQTAGDLYQLERIRKAFPD 182 (293)
T ss_pred EeCchhhcc---------------------------------CCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhCCC
Q ss_pred --------------HHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779 242 --------------MQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270 (310)
Q Consensus 242 --------------~~~GadgV~VGsai~~~~dp~~~~~~~~~ 270 (310)
+.+|++|++.|.+=+-++...+..+.+.+
T Consensus 183 ~~v~~G~d~~~~~~l~~G~~G~is~~~n~~p~~~~~l~~~~~~ 225 (293)
T PRK04147 183 KLIYNGFDEMFASGLLAGADGAIGSTYNVNGWRARQIFEAAKA 225 (293)
T ss_pred CEEEEeehHHHHHHHHcCCCEEEechhhhCHHHHHHHHHHHHC
No 439
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.81 E-value=1.1 Score=41.57 Aligned_cols=118 Identities=18% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh
Q 037779 139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ 218 (310)
Q Consensus 139 ~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~ 218 (310)
+..++.++++.-.++.+.+.|.+.+.+.|...+.. + -++.. +.+ ....-.+.++.+..
T Consensus 13 ~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~----------l-----G~pD~---g~l----t~~e~~~~~~~I~~ 70 (285)
T TIGR02317 13 DILQIPGAINAMAALLAERAGFEAIYLSGAAVAAS----------L-----GLPDL---GIT----TLDEVAEDARRITR 70 (285)
T ss_pred CcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHh----------C-----CCCCC---CCC----CHHHHHHHHHHHHh
Confidence 46777789999999999999999998875421100 0 11110 000 00112344555566
Q ss_pred cCCCCEEEEccCCCCCHHH----HHHHHHcCCCEEEEccccc-------cCC---CHHHHHHHHHHHHHcCCCh
Q 037779 219 LGRLPVVHFAAGGVATPAD----AAMMMQLGCDGVFVGSGVF-------KSG---DPVRRARAIVQAVTNYSDP 278 (310)
Q Consensus 219 ~~~iPVv~ia~GGI~t~~d----i~~~~~~GadgV~VGsai~-------~~~---dp~~~~~~~~~~~~~~~~~ 278 (310)
..++||++-++.|-+++.+ ++++.++|+.|+.+=--.+ ... .+..+++.+..+..+..++
T Consensus 71 ~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~ 144 (285)
T TIGR02317 71 VTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDE 144 (285)
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCC
Confidence 6789999999999999988 4677789999999955332 111 3456667776666655544
No 440
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=92.76 E-value=0.6 Score=41.49 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=60.7
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc----c--------chHHHHHHHHcC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI----G--------HFVEAQILEAIG 114 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i----~--------~~~~~~~~~~aG 114 (310)
.++.+...|+++| .++ ...+.........+.+..++..+++|+++-.+- | .++.++.+...|
T Consensus 15 ~~~~~~~~~~D~v-ElR-----lD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 88 (224)
T PF01487_consen 15 ELEEAESSGADAV-ELR-----LDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAIRLG 88 (224)
T ss_dssp HHHHHHHTTTSEE-EEE-----GGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEE-EEE-----eccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHHHcC
Confidence 3555555599998 442 111211100111456778888889999984331 1 123445566689
Q ss_pred CCeeeecCCCChhHHHHHHHhcCCCCcEEeecC----CHH--H----HHHHHHhCCCEEEEe
Q 037779 115 VDYVDESEVLTPADEENHINKHNFRVPFVCGCR----NLG--E----SLRRIREGAAMIRTK 166 (310)
Q Consensus 115 ad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~----t~~--e----a~~a~~~Gad~I~v~ 166 (310)
+++|.+.-...+.........+..+..++++.| |+. + ..++.+.|||++++-
T Consensus 89 ~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia 150 (224)
T PF01487_consen 89 PDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIA 150 (224)
T ss_dssp SSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEE
T ss_pred CCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 999974322123333222322335678888877 322 2 345557899999875
No 441
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.72 E-value=1.6 Score=40.36 Aligned_cols=120 Identities=19% Similarity=0.149 Sum_probs=81.1
Q ss_pred CCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779 138 FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK 217 (310)
Q Consensus 138 ~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~ 217 (310)
.++.++.++.|+-.++.+.+.|.+.+.+.|...... ++ ..++.-.+.+. -.+.++.|.
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~s----------lG--~pD~~~~t~~e----------~~~~vrrI~ 74 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAAS----------LG--LPDLGITTLDE----------VLADARRIT 74 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHh----------cC--CCccccccHHH----------HHHHHHHHH
Confidence 457888899999999999999999998775422110 00 01111111111 234556666
Q ss_pred hcCCCCEEEEccCCCCCHHHH----HHHHHcCCCEEEEcccccc-------CC---CHHHHHHHHHHHHHcCCChh
Q 037779 218 QLGRLPVVHFAAGGVATPADA----AMMMQLGCDGVFVGSGVFK-------SG---DPVRRARAIVQAVTNYSDPD 279 (310)
Q Consensus 218 ~~~~iPVv~ia~GGI~t~~di----~~~~~~GadgV~VGsai~~-------~~---dp~~~~~~~~~~~~~~~~~~ 279 (310)
+..++||++-.+.|-+++.++ +++.++|+.|+-+=-.... .. ++.+++..++.++++.++|+
T Consensus 75 ~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~ 150 (289)
T COG2513 75 DAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPD 150 (289)
T ss_pred hhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 667999999999999987665 5666889999987555553 11 46788888888888887653
No 442
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.51 E-value=0.68 Score=43.10 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCcEEEecccccc---hhh--------hcC---CCC-CCCChHHHHHHHhhcCcceEeeccccchHHHHH
Q 037779 45 PEQARIAEEAGACAVMALERVPA---DIR--------AQG---GVA-RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~---d~r--------~~~---G~~-~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~ 109 (310)
.++++.++++|+++|...|..+. +.+ .++ |.. .....+.++++++.+++||+....+.+.+.+..
T Consensus 172 ~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~ 251 (301)
T PRK07259 172 VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIE 251 (301)
T ss_pred HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHH
Confidence 47799999999999865551110 111 111 110 122467888999999999999999987788877
Q ss_pred HHHcCCCeee
Q 037779 110 LEAIGVDYVD 119 (310)
Q Consensus 110 ~~~aGad~v~ 119 (310)
+..+|||.|.
T Consensus 252 ~l~aGAd~V~ 261 (301)
T PRK07259 252 FIMAGASAVQ 261 (301)
T ss_pred HHHcCCCcee
Confidence 7889999987
No 443
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=92.48 E-value=10 Score=36.25 Aligned_cols=181 Identities=9% Similarity=0.025 Sum_probs=101.1
Q ss_pred HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779 47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
+.+++++.+...|.++. +...+ +.|.. .-...++.+.+... +||.++ |.-.+++.+..+..+|-+.|-++ +.
T Consensus 32 ii~AAEe~~sPvIlq~s--~~~~~-~~g~~--~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~ 106 (347)
T TIGR01521 32 IMEAADKTDSPVILQAS--RGARS-YAGAP--FLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSL 106 (347)
T ss_pred HHHHHHHhCCCEEEECC--cchhh-hCCHH--HHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcC
Confidence 47777788888875551 11111 12210 01224455555564 999886 33335677888899999998733 21
Q ss_pred C-------Chh-------HHHHHHHhcCCCC----cEE-----------------------eecCCHHHHHHHH-HhCCC
Q 037779 124 L-------TPA-------DEENHINKHNFRV----PFV-----------------------CGCRNLGESLRRI-REGAA 161 (310)
Q Consensus 124 ~-------~~~-------~~~~~~~~~~~~l----~v~-----------------------~~v~t~~ea~~a~-~~Gad 161 (310)
+ +.+ ++++..+..+..+ ..+ ...++++|+++-. +.|+|
T Consensus 107 l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD 186 (347)
T TIGR01521 107 REDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVD 186 (347)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcC
Confidence 2 222 2333333222100 000 0134667777655 46888
Q ss_pred EEEEe-cCCCCCchHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCC----
Q 037779 162 MIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVAT---- 234 (310)
Q Consensus 162 ~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t---- 234 (310)
.+.+. |..++.. +. ..+. ...-++++++.|.+.. ++|+|.=-++|+..
T Consensus 187 ~LAvaiGt~HG~Y------------------k~~~~p~-------~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~ 241 (347)
T TIGR01521 187 ALAVAIGTSHGAY------------------KFTRKPT-------GEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLD 241 (347)
T ss_pred EEehhcccccCCc------------------CCCCCCC-------hhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhH
Confidence 77654 3322210 10 0010 0012578889998877 69987543334310
Q ss_pred ----------------HHHHHHHHHcCCCEEEEcccccc
Q 037779 235 ----------------PADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 235 ----------------~~di~~~~~~GadgV~VGsai~~ 257 (310)
.+++++++++|..-|=++|.+..
T Consensus 242 ~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 242 IINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred HHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 48999999999999999998765
No 444
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=92.45 E-value=2.1 Score=42.71 Aligned_cols=170 Identities=11% Similarity=0.144 Sum_probs=91.5
Q ss_pred HHHHHHhh--cCcceEeecccc---chH-HHHHHH-HcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHH
Q 037779 83 LIKQIKSS--VTIPVMAKARIG---HFV-EAQILE-AIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRR 155 (310)
Q Consensus 83 ~i~~i~~~--~~lPv~~kd~i~---~~~-~~~~~~-~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a 155 (310)
.++++.+. .++|++.....+ +.. .++.++ ..|+|.|..+..+..+.+...+...+.++-+++.++|+.-. ..
T Consensus 77 ~l~~~~~~~~~~~~vI~DaKrgDI~T~~~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~~~kgvfvL~~tSNpga~-~~ 155 (477)
T PRK05500 77 LLLEVLAAIPPDIPIILDAKHGDLNTSTIFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPGAI-AL 155 (477)
T ss_pred HHHHHHHHhccCCeEEEEecccChHHHHHHHHHHHhhcCCCEEEECCccCccchHHHHhcCCCcEEEEEeCCCcCHH-HH
Confidence 34444433 368898855444 222 344555 48999998655555555555554444567777766665422 11
Q ss_pred HHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHHHhc-CCCCEEEEccCCCC
Q 037779 156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQTKQL-GRLPVVHFAAGGVA 233 (310)
Q Consensus 156 ~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~~~-~~iPVv~ia~GGI~ 233 (310)
.... ..| .+...+.++.+...+.. +.-++ -.+.+ .+.++.+++. ++.+++ .=||+
T Consensus 156 Q~~~-----~~g---~~ly~~v~~~~~~~~~~-------~~~g~-----VvGAT~p~~~~~iR~~~p~~~iL---~PGiG 212 (477)
T PRK05500 156 QEYP-----TPE---NPFYLQVVKEAKTWGTP-------EQLGL-----EVGTTNPEVLAKIRQIAPERLIL---LRSIW 212 (477)
T ss_pred hhcc-----cCC---CcHHHHHHHHHHHhCCC-------CceEE-----EECCCChHHHHHHHHhCCCCEEE---ccccc
Confidence 1110 111 11222333333322210 00000 01222 3445556554 334453 24553
Q ss_pred C-HHHHHHHHHcCCC------EEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779 234 T-PADAAMMMQLGCD------GVFVGSGVFKSGDPVRRARAIVQAVTNYS 276 (310)
Q Consensus 234 t-~~di~~~~~~Gad------gV~VGsai~~~~dp~~~~~~~~~~~~~~~ 276 (310)
. ..++.+++++|.+ -+.+|++|+.++||.+.++++.+.++..+
T Consensus 213 AQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~ 262 (477)
T PRK05500 213 AEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIR 262 (477)
T ss_pred cCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 3447777788876 68999999999999999999999988654
No 445
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.36 E-value=7.2 Score=35.85 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=48.5
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--CCCCCh----HHHHHHHhhcCcceEeeccc----cchHH----
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--ARMSDP----QLIKQIKSSVTIPVMAKARI----GHFVE---- 106 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~~~~~~----~~i~~i~~~~~lPv~~kd~i----~~~~~---- 106 (310)
.+-|.-.|+.++++|+++|.+--.. .....|. ...-.. ...+.+++....|+++-|.- ...++
T Consensus 21 tayD~~sA~i~~~aG~d~ilvGdSl---gm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~n 97 (263)
T TIGR00222 21 TAYDYSFAKLFADAGVDVILVGDSL---GMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKN 97 (263)
T ss_pred eccCHHHHHHHHHcCCCEEEECccH---hHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHH
Confidence 4566788999999999998432100 0000011 111112 34567777744455443221 11122
Q ss_pred H-HHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEE
Q 037779 107 A-QILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV 143 (310)
Q Consensus 107 ~-~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~ 143 (310)
+ +.+.++||+.|.+-......+.++.+.+ .+++++
T Consensus 98 a~rl~~eaGa~aVkiEgg~~~~~~i~~l~~--~gIpV~ 133 (263)
T TIGR00222 98 AARVMQETGANAVKLEGGEWLVETVQMLTE--RGVPVV 133 (263)
T ss_pred HHHHHHHhCCeEEEEcCcHhHHHHHHHHHH--CCCCEE
Confidence 3 3344499999985433223344444443 345555
No 446
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=92.24 E-value=0.63 Score=43.28 Aligned_cols=88 Identities=27% Similarity=0.360 Sum_probs=56.9
Q ss_pred ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEeccccc---chhh--------hcCC---CC-CCCChHHHHHHHhhc
Q 037779 28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVP---ADIR--------AQGG---VA-RMSDPQLIKQIKSSV 91 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~---~d~r--------~~~G---~~-~~~~~~~i~~i~~~~ 91 (310)
.|+..+++.+ ..+ .++++.++++|+++|...|... .+.+ ..+| .. .....+.++++++.+
T Consensus 158 ~pv~vKi~~~----~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 233 (300)
T TIGR01037 158 VPVFAKLSPN----VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV 233 (300)
T ss_pred CCEEEECCCC----hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC
Confidence 3555565531 122 4789999999999996544111 0111 0111 10 000136778888889
Q ss_pred CcceEeeccccchHHHHHHHHcCCCeee
Q 037779 92 TIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 92 ~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
++||+....+.+.+++..+...|||.|.
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~ 261 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQ 261 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCcee
Confidence 9999999999877888888889999987
No 447
>PRK15452 putative protease; Provisional
Probab=92.14 E-value=3.2 Score=41.05 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 211 DLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 211 ~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
.++..+++. .++|+.+-..-.|.+...+..+.++|++.|.+.+-+.
T Consensus 99 G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 99 GLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred HHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCC
Confidence 344444443 3566654445566777777777778888887777553
No 448
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=92.14 E-value=0.74 Score=41.11 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~ 120 (310)
+..+.+...|+ .+ .+ +|+. ..|...-.+++.++++++.+++|+++...+++.+++..+..+|++.++.
T Consensus 145 ~~~~~~~~~g~-~i-i~----tdI~-~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 145 EVRDFLNSFDY-GL-IV----LDIH-SVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred HHHHHHHhcCC-EE-EE----EECC-ccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 56777788888 55 23 3442 2244444578999999999999999999999888888888899999873
No 449
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=92.12 E-value=9.3 Score=37.19 Aligned_cols=52 Identities=21% Similarity=0.425 Sum_probs=41.7
Q ss_pred CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHHHHHcCCC
Q 037779 222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQAVTNYSD 277 (310)
Q Consensus 222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~~~~~~~~ 277 (310)
.|| .+||++ +..+.++++ +|-|-+ .+|.+++..+ .+..-+++|++++++...
T Consensus 315 ~Pv---~sgG~~-~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aGa~A~rqA~ea~~~ 369 (391)
T cd08209 315 FPV---PSAGIH-PGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAGVRAFREAIDAVLA 369 (391)
T ss_pred eEe---cCCCCC-hhHHHHHHHHhCCceEEecCcceecCCCCchhHHHHHHHHHHHHhc
Confidence 466 589995 999999997 698865 4688899865 578889999999987554
No 450
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=92.07 E-value=12 Score=35.92 Aligned_cols=48 Identities=8% Similarity=0.109 Sum_probs=39.5
Q ss_pred cHHHHHHHHhcC---------CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 209 PYDLVMQTKQLG---------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~l~~~i~~~~---------~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
++++++.+.+.. ++|+|.=-.+|+ +.++++++.++|..-|=++|.+..
T Consensus 228 d~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGi-pde~i~~ai~~GI~KINi~T~l~~ 284 (350)
T PRK09197 228 RPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGS-TLEEIREAVSYGVVKMNIDTDTQW 284 (350)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCC-CHHHHHHHHHCCCeeEEeCcHHHH
Confidence 577888887765 799877666677 469999999999999999998765
No 451
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.97 E-value=0.64 Score=45.48 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=59.5
Q ss_pred cccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccc----hh-----------h-hcC---CCC-CCCChHHHH
Q 037779 27 KVGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPA----DI-----------R-AQG---GVA-RMSDPQLIK 85 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~----d~-----------r-~~~---G~~-~~~~~~~i~ 85 (310)
..|+.++|+-. ..+ .++++.++++|+++|+..|.... |. + .++ |.. +...++.++
T Consensus 168 ~~Pv~vKl~p~----~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~ 243 (420)
T PRK08318 168 RLPVIVKLTPN----ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVA 243 (420)
T ss_pred CCcEEEEcCCC----cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHH
Confidence 35777777742 223 58899999999999976661111 11 1 111 221 112356777
Q ss_pred HHHhhc---CcceEeeccccchHHHHHHHHcCCCeee
Q 037779 86 QIKSSV---TIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 86 ~i~~~~---~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
++++.+ ++||+....+.+.+++..+..+||+.|.
T Consensus 244 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 244 EIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred HHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 888876 7999999888877787777779999987
No 452
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.90 E-value=12 Score=37.15 Aligned_cols=169 Identities=16% Similarity=0.112 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeec----cccc--------hHHHHHH
Q 037779 46 EQARIAEEAGACAVMALE--RVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKA----RIGH--------FVEAQIL 110 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd----~i~~--------~~~~~~~ 110 (310)
++++.+.++|+..|-.-. ..+...+ | ......+.++.+++. .++++..-. ..++ ..+++.+
T Consensus 30 ~ia~~Ld~~Gv~~IE~~ggatf~~~~~-f---~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A 105 (448)
T PRK12331 30 PILEKLDNAGYHSLEMWGGATFDACLR-F---LNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKS 105 (448)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhc-c---CCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHH
Confidence 679999999999872210 0010011 1 112346678888776 356665211 1221 1456788
Q ss_pred HHcCCCeeeecCCC----ChhHHHHHHHhcCCCCcEEee-----cCCHH----HHHHHHHhCCCEEEEecCCCCCchHHH
Q 037779 111 EAIGVDYVDESEVL----TPADEENHINKHNFRVPFVCG-----CRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEA 177 (310)
Q Consensus 111 ~~aGad~v~~~~~~----~~~~~~~~~~~~~~~l~v~~~-----v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~ 177 (310)
.++|+|.+.+...+ +..+.++.+++++..+.+.++ .++.+ -++.+.++|+|.|.+-=..+..
T Consensus 106 ~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l----- 180 (448)
T PRK12331 106 VENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL----- 180 (448)
T ss_pred HHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-----
Confidence 88999998743222 233455555555433222122 22322 3455667788887764111110
Q ss_pred HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE--ccCCCCCHHHHHHHHHcCCCEEEE
Q 037779 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF--AAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i--a~GGI~t~~di~~~~~~GadgV~V 251 (310)
.+. ...++++.+++..++|+-+= -..|.. ..+..+++++||+.|=+
T Consensus 181 -----------------~P~----------~v~~lv~alk~~~~~pi~~H~Hnt~GlA-~AN~laAieaGad~vD~ 228 (448)
T PRK12331 181 -----------------TPY----------VAYELVKRIKEAVTVPLEVHTHATSGIA-EMTYLKAIEAGADIIDT 228 (448)
T ss_pred -----------------CHH----------HHHHHHHHHHHhcCCeEEEEecCCCCcH-HHHHHHHHHcCCCEEEe
Confidence 110 12445666665545565210 135663 67777888888887654
No 453
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=91.85 E-value=9.6 Score=34.85 Aligned_cols=170 Identities=15% Similarity=0.203 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCc----EEEeccc----ccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779 46 EQARIAEEAGAC----AVMALER----VPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY 117 (310)
Q Consensus 46 ~~a~~~~~~Ga~----~I~~l~~----~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~ 117 (310)
+.|+.+.+.|+. .+ .-.. ..|.+..|.|-.+..-++.++++++.+++||+--.. +..+++.+.+. +|.
T Consensus 20 ~~A~~lk~~~~~~~~~~~-fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~--~~~~~~~vae~-vDi 95 (258)
T TIGR01362 20 RVAEKLKELTSKLGVPFI-FKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDVH--ESSQCEPVAEV-VDI 95 (258)
T ss_pred HHHHHHHHHHHhcCCCeE-EecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeC--CHHHHHHHHhh-CcE
Confidence 567777776443 33 1100 123444565543344578899999999999965322 33455555556 788
Q ss_pred eeecC-CCChhHHHHHHHhcCCCCcEEee---cCCHHHHH----HHHHhCCC-EEEEe-cCCCCCchHHHHHHHHHhhcc
Q 037779 118 VDESE-VLTPADEENHINKHNFRVPFVCG---CRNLGESL----RRIREGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGD 187 (310)
Q Consensus 118 v~~~~-~~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~----~a~~~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~ 187 (310)
+-+.+ .....++.+.+.+ .+.++.+. .-|++|.. +....|-+ ++-.. |..++.+
T Consensus 96 lQIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~-------------- 159 (258)
T TIGR01362 96 IQIPAFLCRQTDLLVAAAK--TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYN-------------- 159 (258)
T ss_pred EEeCchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCC--------------
Confidence 76543 2334566666654 24455542 24566543 33445664 44333 3222111
Q ss_pred eecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc-------------CCCCC--HHHHHHHHHcCCCEEEEc
Q 037779 188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA-------------GGVAT--PADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~-------------GGI~t--~~di~~~~~~GadgV~VG 252 (310)
+...+..-+..+++. +.||+.-++ ||... +.-++..+.+|+||+++=
T Consensus 160 -----------------r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iE 221 (258)
T TIGR01362 160 -----------------NLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFME 221 (258)
T ss_pred -----------------CcccchhhhHHHHhc-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 112234445555554 689975543 33221 122355667899999987
Q ss_pred c
Q 037779 253 S 253 (310)
Q Consensus 253 s 253 (310)
+
T Consensus 222 v 222 (258)
T TIGR01362 222 T 222 (258)
T ss_pred e
Confidence 5
No 454
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.78 E-value=3.1 Score=37.64 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh
Q 037779 139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ 218 (310)
Q Consensus 139 ~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~ 218 (310)
+..++.++++.-.++.+.+.|.+.+.+.|...... + ..-+...++.+. -.+.++.+.+
T Consensus 9 ~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s----------~--G~pD~~~lt~~e----------~~~~~~~I~~ 66 (238)
T PF13714_consen 9 KPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS----------L--GYPDGGLLTLTE----------MLAAVRRIAR 66 (238)
T ss_dssp SSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH----------T--TS-SSS-S-HHH----------HHHHHHHHHH
T ss_pred CcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH----------c--CCCCCCCCCHHH----------HHHHHHHHHh
Confidence 57788899999999999999999998764311000 0 000111111111 1344556666
Q ss_pred cCCCCEEEEccCCCCC-HHH----HHHHHHcCCCEEEEccccc--cCC---CHHHHHHHHHHHHHcCCCh
Q 037779 219 LGRLPVVHFAAGGVAT-PAD----AAMMMQLGCDGVFVGSGVF--KSG---DPVRRARAIVQAVTNYSDP 278 (310)
Q Consensus 219 ~~~iPVv~ia~GGI~t-~~d----i~~~~~~GadgV~VGsai~--~~~---dp~~~~~~~~~~~~~~~~~ 278 (310)
..++||++-++.|-++ +.+ ++++.++|+.|+.+=-.-+ ... .+.+++..++.+..+..++
T Consensus 67 ~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~ 136 (238)
T PF13714_consen 67 AVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDP 136 (238)
T ss_dssp HSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSST
T ss_pred hhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCC
Confidence 6789999999999988 555 5677789999999866510 111 3566777777777665554
No 455
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.75 E-value=4.9 Score=36.54 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCChHHHHHHH---hhcCcceEeecc-----cc--c---hHH-HHHH
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVA-RMSDPQLIKQIK---SSVTIPVMAKAR-----IG--H---FVE-AQIL 110 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~~~~i~~i~---~~~~lPv~~kd~-----i~--~---~~~-~~~~ 110 (310)
..++.+.+.|+++++.. .+.|+. .....+.+++++ ...++|+++... ++ . ... ++.+
T Consensus 94 ~~v~~al~~Ga~~v~~~--------~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a 165 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIH--------VNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLG 165 (258)
T ss_pred eeHHHHHHCCCCEEEEE--------EecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHH
Confidence 45888999999998432 121110 001133444444 446889887422 11 1 112 3566
Q ss_pred HHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEe--ecC--CHHH----HHHHHHhCCCEEEEe
Q 037779 111 EAIGVDYVDESEVLTPADEENHINKHNFRVPFVC--GCR--NLGE----SLRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~--~v~--t~~e----a~~a~~~Gad~I~v~ 166 (310)
.++|||+|-.+....+ +..+.+.+ ...+++.+ +++ |.++ +..+.+.|++-+.+.
T Consensus 166 ~~~GADyikt~~~~~~-~~l~~~~~-~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g 227 (258)
T TIGR01949 166 AELGADIVKTPYTGDI-DSFRDVVK-GCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVG 227 (258)
T ss_pred HHHCCCEEeccCCCCH-HHHHHHHH-hCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence 6799999974422122 33333332 12355544 466 5444 445558999866553
No 456
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.67 E-value=1.9 Score=39.82 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=57.0
Q ss_pred hHHHHHHHhhcC--cceEeeccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh---cCCCCcEEee--cCCHHHHH
Q 037779 81 PQLIKQIKSSVT--IPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK---HNFRVPFVCG--CRNLGESL 153 (310)
Q Consensus 81 ~~~i~~i~~~~~--lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~---~~~~l~v~~~--v~t~~ea~ 153 (310)
.+.++++++... .++.+ -+.+.+++..+.++|+|.|.. +.++++++.+.++. ..+++.+.++ + |++.+.
T Consensus 169 ~~~v~~~k~~~p~~~~I~V--Ev~tleea~~A~~~GaDiI~L-Dn~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~ 244 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI--ECESLEEAKNAMNAGADIVMC-DNMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENIN 244 (273)
T ss_pred HHHHHHHHHhCCCCceEEE--EeCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHH
Confidence 456777776543 44443 234567888888999999864 33477777776654 1234555554 5 899999
Q ss_pred HHHHhCCCEEEEe
Q 037779 154 RRIREGAAMIRTK 166 (310)
Q Consensus 154 ~a~~~Gad~I~v~ 166 (310)
...+.|+|+|.+.
T Consensus 245 ~ya~~GvD~IsvG 257 (273)
T PRK05848 245 AYAKSGVDAISSG 257 (273)
T ss_pred HHHHcCCCEEEeC
Confidence 9999999999985
No 457
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=91.65 E-value=3.5 Score=36.75 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeeccc--------cch---HH-HHH
Q 037779 46 EQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKARI--------GHF---VE-AQI 109 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~i--------~~~---~~-~~~ 109 (310)
..++.+.+.|++++ .+++....+.. ...+.+++++ ...++|+++.+.. ... .. ++.
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~--------~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEEER--------EMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCchHH--------HHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 45888889999987 22321000000 0123444444 4568999986654 111 22 345
Q ss_pred HHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEe-e---cCCHHH----HHHHHHhCCCEEEEe
Q 037779 110 LEAIGVDYVDESEVLTPADEENHINKHNFRVPFVC-G---CRNLGE----SLRRIREGAAMIRTK 166 (310)
Q Consensus 110 ~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~-~---v~t~~e----a~~a~~~Gad~I~v~ 166 (310)
+.++|||+|-......+ +..+.+.+ ...+++++ + ..|.++ +..+.+.|++-+.+.
T Consensus 152 a~~~GaD~Ik~~~~~~~-~~~~~i~~-~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 152 GAELGADIVKTKYTGDA-ESFKEVVE-GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred HHHHCCCEEEecCCCCH-HHHHHHHh-cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 77799999974322122 33333433 23355544 2 245554 677788999977664
No 458
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.64 E-value=0.94 Score=43.07 Aligned_cols=88 Identities=26% Similarity=0.306 Sum_probs=62.2
Q ss_pred cccceeeecCCccccCC-CHHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhhcC-cceEeeccccc
Q 037779 27 KVGLAQMLRGGVIMDVV-TPEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSSVT-IPVMAKARIGH 103 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~~~-~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~~~-lPv~~kd~i~~ 103 (310)
.+|+..+.|-+. +.. +.++++..+++|++.+.+..+.+. . .|. .-..+.+.++.+++... +||+++..|.+
T Consensus 141 ~~pVs~KIRI~~--d~~kTvd~ak~~e~aG~~~ltVHGRtr~-~---kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~ 214 (358)
T KOG2335|consen 141 NVPVSVKIRIFV--DLEKTVDYAKMLEDAGVSLLTVHGRTRE-Q---KGLKTGPADWEAIKAVRENVPDIPVIANGNILS 214 (358)
T ss_pred CCCeEEEEEecC--cHHHHHHHHHHHHhCCCcEEEEecccHH-h---cCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCc
Confidence 355666777652 222 268999999999999844323221 1 121 22456888999999887 99999999987
Q ss_pred hHHHHHHHH-cCCCeeee
Q 037779 104 FVEAQILEA-IGVDYVDE 120 (310)
Q Consensus 104 ~~~~~~~~~-aGad~v~~ 120 (310)
..++..+.. .|||+|-.
T Consensus 215 ~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 215 LEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHHHHHHHHHhCCceEEe
Confidence 778877777 99999974
No 459
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.64 E-value=1.7 Score=40.64 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=47.2
Q ss_pred HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779 211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV 284 (310)
Q Consensus 211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~ 284 (310)
++++.+.+. .++||++ -.|+-+|.+-+ +.+.+.|+||+++-.-.|..++.....+-|....++-.-|-.++.+
T Consensus 61 ~v~~~~v~~~~grvpvia-G~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~ 138 (299)
T COG0329 61 EVLEAVVEAVGGRVPVIA-GVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNI 138 (299)
T ss_pred HHHHHHHHHHCCCCcEEE-ecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 344555553 3689852 34554433333 3444679999999999999998877777777776665555444443
No 460
>PRK15492 triosephosphate isomerase; Provisional
Probab=91.64 E-value=2.3 Score=38.97 Aligned_cols=35 Identities=29% Similarity=0.638 Sum_probs=29.3
Q ss_pred CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccC
Q 037779 221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKS 258 (310)
Q Consensus 221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~ 258 (310)
+++| +..|+| +++++.+++.. ..||++||++=...
T Consensus 212 ~irI--LYGGSV-~~~N~~~l~~~~diDG~LvG~aSl~~ 247 (260)
T PRK15492 212 DIPV--FYGGSV-NAENANELFGQPHIDGLFIGRSAWDA 247 (260)
T ss_pred ceeE--EEcCcc-CHHHHHHHhcCCCCCEEEeehhhcCH
Confidence 4778 679999 59999999865 79999999987763
No 461
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.61 E-value=10 Score=34.29 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=110.3
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~ 123 (310)
.+.|..++++||++|..- + ..|.|.- ..+++..+++.++.|+-.-... ..+..+++.+.-.+.+. .++.
T Consensus 27 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~L~~~~~~~lNlE~a~-~~em~~ia~~~kP~~vtLVPE~ 96 (239)
T PRK05265 27 VRAALIAEQAGADGITVH-L-REDRRHI-------RDRDVRLLRETLKTELNLEMAA-TEEMLDIALEVKPHQVTLVPEK 96 (239)
T ss_pred HHHHHHHHHcCCCEEEec-C-CCCcccC-------CHHHHHHHHHhcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence 388999999999998432 1 1244443 3788999998888777332111 23566788888888775 3211
Q ss_pred ---------CC-------hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779 124 ---------LT-------PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMG 186 (310)
Q Consensus 124 ---------~~-------~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~ 186 (310)
+. ...+++.++..+..+-++++ .++++++.+.+.|||.|=.+ |+ |.. +
T Consensus 97 r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~GAd~VELhTG~-yA~----a--------- 161 (239)
T PRK05265 97 REELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEVGADRIELHTGP-YAD----A--------- 161 (239)
T ss_pred CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechh-hhc----C---------
Confidence 11 12445555555555667776 47788899999999999776 32 110 0
Q ss_pred ceecccccCchhHHhhhccCCCcHHH--HHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC-
Q 037779 187 DIRVLRNMDDDEVFTFAKNIAAPYDL--VMQT---KQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG- 259 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~l--~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~- 259 (310)
+.. ....++ +... .....+-| =|.-|+ +.+++..+.+. +..-+-+|-+|+.--
T Consensus 162 ----~~~-------------~~~~el~~~~~aa~~a~~lGL~V--nAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~Al 221 (239)
T PRK05265 162 ----KTE-------------AEAAELERIAKAAKLAASLGLGV--NAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARAL 221 (239)
T ss_pred ----CCc-------------chHHHHHHHHHHHHHHHHcCCEE--ecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence 000 001111 1111 11134555 678899 59999998764 889999998887521
Q ss_pred --CHHHHHHHHHHHHH
Q 037779 260 --DPVRRARAIVQAVT 273 (310)
Q Consensus 260 --dp~~~~~~~~~~~~ 273 (310)
-....+++|++.+.
T Consensus 222 ~~Gl~~aV~~m~~~i~ 237 (239)
T PRK05265 222 FVGLEEAVREMKRLMD 237 (239)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 12345555555543
No 462
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.58 E-value=11 Score=34.63 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCcEEE--ecc---c--ccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVM--ALE---R--VPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~--~l~---~--~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+.+.|+.... ... . ..|.+..|.|-.+..-++.++++++.+++|++-- +.+..+++...+. +|.+
T Consensus 28 ~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvTe--V~~~~~~~~v~~~-~Dil 104 (264)
T PRK05198 28 RIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLTD--VHEPEQAAPVAEV-VDVL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEE--eCCHHHHHHHHhh-CcEE
Confidence 567777776543210 111 0 1244556665443456788999999999999653 2233566666666 7887
Q ss_pred eecC-CCChhHHHHHHHhcCCCCcEEee---cCCHHHHHH----HHHhCCC-EEEE
Q 037779 119 DESE-VLTPADEENHINKHNFRVPFVCG---CRNLGESLR----RIREGAA-MIRT 165 (310)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~~----a~~~Gad-~I~v 165 (310)
-+.+ .....++.+.+.+ .+.++.+. .-|++|..- ....|-. ++-.
T Consensus 105 QIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilc 158 (264)
T PRK05198 105 QIPAFLCRQTDLLVAAAK--TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILC 158 (264)
T ss_pred EECchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 6543 2334566666654 34555543 245665443 3345654 4433
No 463
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.53 E-value=0.95 Score=37.64 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=35.4
Q ss_pred HHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779 211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274 (310)
Q Consensus 211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~ 274 (310)
++++.+++. .++.|+ .||+-.++|...+.++|++++.- -..+..+.+..++..+..
T Consensus 82 ~lve~lre~G~~~i~v~---~GGvip~~d~~~l~~~G~~~if~-----pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 82 GLVEALREAGVEDILVV---VGGVIPPGDYQELKEMGVDRIFG-----PGTPIEEALSDLLTRLGA 139 (143)
T ss_pred HHHHHHHHhCCcceEEe---ecCccCchhHHHHHHhCcceeeC-----CCCCHHHHHHHHHHHHHh
Confidence 345555554 245543 48888899999999999998742 122445555556555543
No 464
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.44 E-value=0.95 Score=42.84 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=59.0
Q ss_pred ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEeccccc-chhhh----------cCCCC-CCCChHHHHHHHhhcCcc
Q 037779 28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVP-ADIRA----------QGGVA-RMSDPQLIKQIKSSVTIP 94 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~-~d~r~----------~~G~~-~~~~~~~i~~i~~~~~lP 94 (310)
.|+.++|+... .+ .+.++.+.++|+++|...|+.+ .+++. ++|.. +...++.++++++.+++|
T Consensus 164 iPv~vKl~p~~----~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip 239 (325)
T cd04739 164 IPVAVKLSPFF----SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS 239 (325)
T ss_pred CCEEEEcCCCc----cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC
Confidence 57777776521 23 5789999999999997666221 01110 01111 112245677888888999
Q ss_pred eEeeccccchHHHHHHHHcCCCeee
Q 037779 95 VMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 95 v~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
|+....+.+.+++.....+||+.|.
T Consensus 240 Iig~GGI~s~~Da~e~l~aGA~~Vq 264 (325)
T cd04739 240 LAASGGVHDAEDVVKYLLAGADVVM 264 (325)
T ss_pred EEEECCCCCHHHHHHHHHcCCCeeE
Confidence 9999988877777767779999997
No 465
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.29 E-value=3 Score=37.00 Aligned_cols=72 Identities=32% Similarity=0.380 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCC---CCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779 43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVAR---MSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~---~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
.+.+.++.+.+.|++.|.... ...+|... ....+.++++++.+++|+++...+...+.+..+.+.|+|+|.
T Consensus 110 ~~~~~~~~~~~~gad~i~~~~------~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~ 183 (236)
T cd04730 110 TSVEEARKAEAAGADALVAQG------AEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQ 183 (236)
T ss_pred CCHHHHHHHHHcCCCEEEEeC------cCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEE
Confidence 345778888889999874321 11112211 123668889998889999998888766677777789999997
Q ss_pred e
Q 037779 120 E 120 (310)
Q Consensus 120 ~ 120 (310)
.
T Consensus 184 v 184 (236)
T cd04730 184 M 184 (236)
T ss_pred E
Confidence 3
No 466
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.28 E-value=12 Score=34.55 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHc-CCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779 46 EQARIAEEA-GACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV 115 (310)
Q Consensus 46 ~~a~~~~~~-Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa 115 (310)
+.++.+.+. |++++.... ..+-...+... +.++.+.+.+ ++||++...-.. .+.++.+.++||
T Consensus 25 ~~i~~l~~~~Gv~gi~~~G-------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNG-------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred HHHHHHHhcCCCCEEEECc-------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence 678999999 999984431 01101112222 2334444433 478888644322 245677788999
Q ss_pred Ceee
Q 037779 116 DYVD 119 (310)
Q Consensus 116 d~v~ 119 (310)
|++.
T Consensus 98 d~v~ 101 (288)
T cd00954 98 DAIS 101 (288)
T ss_pred CEEE
Confidence 9987
No 467
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=91.17 E-value=1.9 Score=39.46 Aligned_cols=84 Identities=14% Similarity=0.278 Sum_probs=52.8
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC--------CChhh
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY--------SDPDV 280 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~--------~~~~~ 280 (310)
+++.+..+++..++|+.. -==|-++-++.+...+|||+|++--+++.. ..+++|.+..+.. +++.-
T Consensus 97 s~~dL~~v~~~~~~PvL~--KDFIid~~QI~eA~~~GADaVLLI~~~L~~----~~l~~l~~~a~~lGle~lVEVh~~~E 170 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLR--KDFIIDPYQIYEARAAGADAVLLIAAILSD----DQLEELLELAHSLGLEALVEVHNEEE 170 (254)
T ss_dssp HHHHHHHHHHHSSS-EEE--ES---SHHHHHHHHHTT-SEEEEEGGGSGH----HHHHHHHHHHHHTT-EEEEEESSHHH
T ss_pred CHHHHHHHHHHhCCCccc--ccCCCCHHHHHHHHHcCCCEeehhHHhCCH----HHHHHHHHHHHHcCCCeEEEECCHHH
Confidence 456667777767788853 222337999999999999999999999873 3456666655442 23333
Q ss_pred HHhhhhccCCceecccccc
Q 037779 281 LAEVSCGLGEAMVGIDLND 299 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ 299 (310)
+.. +-..|..+.||.-.|
T Consensus 171 l~~-al~~~a~iiGINnRd 188 (254)
T PF00218_consen 171 LER-ALEAGADIIGINNRD 188 (254)
T ss_dssp HHH-HHHTT-SEEEEESBC
T ss_pred HHH-HHHcCCCEEEEeCcc
Confidence 333 336689999986444
No 468
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=4.7 Score=38.60 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779 211 DLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 211 ~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~ 256 (310)
-++..+++. +++|+.+-.-.-+.|++.+.-+.+.|+..+++.+.+-
T Consensus 102 g~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls 148 (347)
T COG0826 102 GLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELS 148 (347)
T ss_pred HHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCC
Confidence 344555543 4677766666778888888888888888777776543
No 469
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.09 E-value=12 Score=34.34 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=100.4
Q ss_pred HHHHHHHHcCCcEEEec-ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779 46 EQARIAEEAGACAVMAL-ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV 123 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l-~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~ 123 (310)
++|+.+.+.|+..+-.- ..-.|.+..|.|.. ......++++++..++|++.-.+ +...++.+.+. +|.+-+. ..
T Consensus 45 ~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~kIga~~ 120 (266)
T PRK13398 45 KVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG-EEGLKILKEVGDKYNLPVVTEVM--DTRDVEEVADY-ADMLQIGSRN 120 (266)
T ss_pred HHHHHHHHcCCCEEEEeeecCCCCCCccCCcH-HHHHHHHHHHHHHcCCCEEEeeC--ChhhHHHHHHh-CCEEEECccc
Confidence 77999999999865211 00001111222211 22345667777788999976433 22456666666 7877644 33
Q ss_pred CChhHHHHHHHhcCCCCcEEeecC---CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779 124 LTPADEENHINKHNFRVPFVCGCR---NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~v~~~v~---t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (310)
....++.+.+.+ .+.++++... +.+|...+.+ .|. +++-.. |. .+++ +
T Consensus 121 ~~n~~LL~~~a~--~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~--------------------Y 178 (266)
T PRK13398 121 MQNFELLKEVGK--TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFET--------------------Y 178 (266)
T ss_pred ccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCC--------------------C
Confidence 344556666654 5677777643 7777766553 355 344333 21 0110 0
Q ss_pred cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC----HHHHHHHHHcCCCEEEEccccccC
Q 037779 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t----~~di~~~~~~GadgV~VGsai~~~ 258 (310)
.. ...+...+..+++...+||++.++=+++. +.....++.+||+|+++=+-+.-.
T Consensus 179 -~~---------~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd 237 (266)
T PRK13398 179 -TR---------NTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPE 237 (266)
T ss_pred -CH---------HHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCcc
Confidence 00 01234555666665578986434555543 555677778999999998877653
No 470
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.02 E-value=1.4 Score=38.87 Aligned_cols=95 Identities=22% Similarity=0.370 Sum_probs=51.7
Q ss_pred eecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCC
Q 037779 144 CGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRL 222 (310)
Q Consensus 144 ~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~i 222 (310)
+.+.|++++..|.+.|||=|-+... ..+ ++.++..+++.+.+..++
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~~G---------------------------------GlTPS~g~i~~~~~~~~i 51 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLEVG---------------------------------GLTPSLGLIRQAREAVDI 51 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGGGT----------------------------------B---HHHHHHHHHHTTS
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCccCC---------------------------------CcCcCHHHHHHHHhhcCC
Confidence 4567899999999999998765421 111 234456677777766667
Q ss_pred CEEEEc--cCC--CCCH-------HHHHHHHHcCCCEEEEccccccCCC-HHHHHHHHHHHH
Q 037779 223 PVVHFA--AGG--VATP-------ADAAMMMQLGCDGVFVGSGVFKSGD-PVRRARAIVQAV 272 (310)
Q Consensus 223 PVv~ia--~GG--I~t~-------~di~~~~~~GadgV~VGsai~~~~d-p~~~~~~~~~~~ 272 (310)
||.++. -+| +.|. ++++.+.++|+|||++|- +..... -.+.++.+.+..
T Consensus 52 pv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~a 112 (201)
T PF03932_consen 52 PVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGA-LTEDGEIDEEALEELIEAA 112 (201)
T ss_dssp EEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE---BETTSSB-HHHHHHHHHHH
T ss_pred ceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEe-ECCCCCcCHHHHHHHHHhc
Confidence 764332 233 2233 456777789999999985 333222 234555555554
No 471
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.00 E-value=14 Score=35.11 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=51.8
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCC--CCCCCChH----HHHHHHhhcCcceEeeccc-c----chHH---
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGG--VARMSDPQ----LIKQIKSSVTIPVMAKARI-G----HFVE--- 106 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G--~~~~~~~~----~i~~i~~~~~lPv~~kd~i-~----~~~~--- 106 (310)
.+-|+..|+.+.++|++.|.+--.. .....| +...-.++ ..+.+++....|+++-|.- + ..++
T Consensus 41 TAyD~~sA~i~d~aGvD~ILVGDSl---gmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~ 117 (332)
T PLN02424 41 TAYDYPSAVHVDSAGIDVCLVGDSA---AMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVE 117 (332)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCcH---HHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHH
Confidence 4566788999999999998432100 000011 11111222 3456677778888886543 2 1222
Q ss_pred -HHHH-HHcCCCeeeecCC-CChhHHHHHHHhcCCCCcEE
Q 037779 107 -AQIL-EAIGVDYVDESEV-LTPADEENHINKHNFRVPFV 143 (310)
Q Consensus 107 -~~~~-~~aGad~v~~~~~-~~~~~~~~~~~~~~~~l~v~ 143 (310)
+..+ .+.||+.|-+-.. ....+.++.+.. .+++++
T Consensus 118 nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~--~GIPV~ 155 (332)
T PLN02424 118 SAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVE--AGIAVM 155 (332)
T ss_pred HHHHHHHHhCCcEEEECCCcHHHHHHHHHHHH--cCCCEE
Confidence 3334 5699999974322 122344444433 356655
No 472
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.98 E-value=0.55 Score=44.80 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=59.2
Q ss_pred ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc--hhh------hcCC---CC-CCCChHHHHHHHhhc--Cc
Q 037779 28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA--DIR------AQGG---VA-RMSDPQLIKQIKSSV--TI 93 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~--d~r------~~~G---~~-~~~~~~~i~~i~~~~--~l 93 (310)
.|+.++|+-+. ......++++.++++|+++|...|+... +.. .++| .. .....+.++++++.+ ++
T Consensus 212 ~PV~vKlsp~~-~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~i 290 (344)
T PRK05286 212 VPLLVKIAPDL-SDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRL 290 (344)
T ss_pred CceEEEeCCCC-CHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCC
Confidence 57777777431 1111247899999999999976663210 010 0111 10 011345778888888 79
Q ss_pred ceEeeccccchHHHHHHHHcCCCeee
Q 037779 94 PVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 94 Pv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
||+....+.+.+++..+..+|||.|.
T Consensus 291 pIig~GGI~s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 291 PIIGVGGIDSAEDAYEKIRAGASLVQ 316 (344)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCHHH
Confidence 99999888887888777779999986
No 473
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.96 E-value=2.9 Score=39.67 Aligned_cols=118 Identities=25% Similarity=0.303 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCcEEEecc-c---------ccc---hhhhcCCCCCCCC----hHHHHHHHhhc--CcceEeecc------
Q 037779 46 EQARIAEEAGACAVMALE-R---------VPA---DIRAQGGVARMSD----PQLIKQIKSSV--TIPVMAKAR------ 100 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~---------~~~---d~r~~~G~~~~~~----~~~i~~i~~~~--~lPv~~kd~------ 100 (310)
+.|+.+.++|+|+| .+| - .|. --..++|+. .+- .+.+++||+.+ ++||.++..
T Consensus 153 ~aA~ra~~aGfDgV-eih~a~gyLl~qFlsp~~N~R~D~yGGsl-enR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 153 HAARLAQEAGFDGV-QIHAAHGYLLSQFLSPLTNKRTDEYGGSL-ENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHcCCCEE-EEchhhhhHHHHhcCCcCCCCCccCCCCH-HHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 45889999999998 454 0 111 011345661 111 23567888887 478887642
Q ss_pred cc-ch----HHHHHHHHcCCCeeeecCC-----CC----------h----hHHHHHHHhcCCCCcEEe--ecCCHHHHHH
Q 037779 101 IG-HF----VEAQILEAIGVDYVDESEV-----LT----------P----ADEENHINKHNFRVPFVC--GCRNLGESLR 154 (310)
Q Consensus 101 i~-~~----~~~~~~~~aGad~v~~~~~-----~~----------~----~~~~~~~~~~~~~l~v~~--~v~t~~ea~~ 154 (310)
.+ +. +.++.+.++|+|.+.++.. .. + .+..+.++++ .++++++ .+.+++++++
T Consensus 231 ~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~ 309 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQ 309 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHH
Confidence 11 11 3456777899999873211 00 0 1334445542 4566666 3789999999
Q ss_pred HHHhC-CCEEEEe
Q 037779 155 RIREG-AAMIRTK 166 (310)
Q Consensus 155 a~~~G-ad~I~v~ 166 (310)
+++.| +|+|.+.
T Consensus 310 ~l~~g~aD~V~lg 322 (338)
T cd04733 310 ALASGAVDGIGLA 322 (338)
T ss_pred HHHcCCCCeeeeC
Confidence 99876 7999885
No 474
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=90.94 E-value=13 Score=34.46 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC-------hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSD-------PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~-------~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+.+.||+.| +++..+|-+ |+..... ...++.+++..++|+++-.+ +.+.++.+.++||+.|
T Consensus 42 ~~a~~~~~~GAdII-DIGgeSTrP----g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~--~~~va~~AL~~GadiI 114 (282)
T PRK11613 42 KHANLMINAGATII-DVGGESTRP----GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS--KPEVIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHHCCCcEE-EECCCCCCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC--CHHHHHHHHHcCCCEE
Confidence 67999999999998 775222211 1111111 11344555555788876644 3366788888999988
Q ss_pred e-ecCCCChhHHHHHHHhcC
Q 037779 119 D-ESEVLTPADEENHINKHN 137 (310)
Q Consensus 119 ~-~~~~~~~~~~~~~~~~~~ 137 (310)
- ++. +..++..+.+.+++
T Consensus 115 NDI~g-~~d~~~~~~~a~~~ 133 (282)
T PRK11613 115 NDIRS-LSEPGALEAAAETG 133 (282)
T ss_pred EECCC-CCCHHHHHHHHHcC
Confidence 5 332 23334445554443
No 475
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=90.93 E-value=0.47 Score=45.65 Aligned_cols=44 Identities=27% Similarity=0.458 Sum_probs=39.2
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa 254 (310)
.+|+-++++++..++||++ .||.+++++.++.++|+|+|.|...
T Consensus 211 ~tW~di~wlr~~~~~Piiv---KgV~~~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILV---KGVLTGEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred CCHHHHHHHHhccCCCEEe---ecCCCHHHHHHHHHcCCCEEEECCC
Confidence 4688899999888899974 9999999999999999999999764
No 476
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.88 E-value=2.4 Score=38.75 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=55.9
Q ss_pred cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC--------hhh
Q 037779 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD--------PDV 280 (310)
Q Consensus 209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~--------~~~ 280 (310)
..+.+..+++..++||+. -.- |..+.++.++.++|||+|.+.-.+... ..++++.+..+...- ..-
T Consensus 99 ~~~~l~~v~~~v~iPvl~-kdf-i~~~~qi~~a~~~GAD~VlLi~~~l~~----~~l~~li~~a~~lGl~~lvevh~~~E 172 (260)
T PRK00278 99 SLEYLRAARAAVSLPVLR-KDF-IIDPYQIYEARAAGADAILLIVAALDD----EQLKELLDYAHSLGLDVLVEVHDEEE 172 (260)
T ss_pred CHHHHHHHHHhcCCCEEe-eee-cCCHHHHHHHHHcCCCEEEEEeccCCH----HHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 466677777777899963 344 556889999999999999999888642 456666666554322 222
Q ss_pred HHhhhhccCCceeccc
Q 037779 281 LAEVSCGLGEAMVGID 296 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~ 296 (310)
+ +.+..+|.++.|+.
T Consensus 173 ~-~~A~~~gadiIgin 187 (260)
T PRK00278 173 L-ERALKLGAPLIGIN 187 (260)
T ss_pred H-HHHHHcCCCEEEEC
Confidence 2 34556799998875
No 477
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.88 E-value=0.79 Score=42.71 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=57.7
Q ss_pred cccceeeecCCccccCCC-HHHHHHHHHc--CCcEEEeccccc----chh--h--------hcCCCC----CCCChHHHH
Q 037779 27 KVGLAQMLRGGVIMDVVT-PEQARIAEEA--GACAVMALERVP----ADI--R--------AQGGVA----RMSDPQLIK 85 (310)
Q Consensus 27 ~~~~~~~l~~g~i~~~~~-~~~a~~~~~~--Ga~~I~~l~~~~----~d~--r--------~~~G~~----~~~~~~~i~ 85 (310)
..|+.++|+-+. +..+ .++++.+.+. |+++|...|... -|. + .++|-. +......++
T Consensus 157 ~iPv~vKl~p~~--~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~ 234 (294)
T cd04741 157 SIPVGVKTPPYT--DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVR 234 (294)
T ss_pred CCCEEEEeCCCC--CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHH
Confidence 367788887754 2112 4677877788 899987555220 011 0 111110 111245567
Q ss_pred HHHhhc--CcceEeeccccchHHHHHHHHcCCCeee
Q 037779 86 QIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 86 ~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
++++.+ ++||+....+.+.+++..+..+||+.|-
T Consensus 235 ~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 235 TFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred HHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 777877 4999999999877777777779999997
No 478
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.86 E-value=2.8 Score=36.52 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCcEEeecC--CHH--HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779 128 DEENHINKHNFRVPFVCGCR--NLG--ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 128 ~~~~~~~~~~~~l~v~~~v~--t~~--ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+.++.+++...+..+.+++| ++. +++.+.+.|+|++.++......+
T Consensus 41 ~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~------------------------------ 90 (206)
T TIGR03128 41 EAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDAT------------------------------ 90 (206)
T ss_pred HHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHH------------------------------
Confidence 45566665444566777765 443 68888999999999884321000
Q ss_pred ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCH-HHHHHHHHcCCCEEEEcccc
Q 037779 204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATP-ADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~-~di~~~~~~GadgV~VGsai 255 (310)
..++++.+++ ..+++.+ .--+-.++ +.+..+.+.|+|.|.+...+
T Consensus 91 -----~~~~i~~~~~-~g~~~~~-~~~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 91 -----IKGAVKAAKK-HGKEVQV-DLINVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred -----HHHHHHHHHH-cCCEEEE-EecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 1344555554 3467642 11233343 77788888899988776543
No 479
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.76 E-value=1.3 Score=41.98 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=58.1
Q ss_pred ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEeccccc---chhhh--------cCCCC-CCCChHHHHHHHhhcCcc
Q 037779 28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVP---ADIRA--------QGGVA-RMSDPQLIKQIKSSVTIP 94 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~---~d~r~--------~~G~~-~~~~~~~i~~i~~~~~lP 94 (310)
.|+..+|+.+. .+ .+.++.++++|+++|...|+.+ -|.+. +.|.. +....+.++++++.+++|
T Consensus 166 iPV~vKl~p~~----~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ip 241 (334)
T PRK07565 166 IPVAVKLSPYF----SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGAD 241 (334)
T ss_pred CcEEEEeCCCc----hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCC
Confidence 57777776532 23 5789999999999996666321 11100 01111 111234567777778999
Q ss_pred eEeeccccchHHHHHHHHcCCCeee
Q 037779 95 VMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 95 v~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
|+....+.+.+++..+..+||+.|-
T Consensus 242 Iig~GGI~s~~Da~e~l~aGA~~V~ 266 (334)
T PRK07565 242 LAATTGVHDAEDVIKMLLAGADVVM 266 (334)
T ss_pred EEEECCCCCHHHHHHHHHcCCCcee
Confidence 9999888877888777789999997
No 480
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.59 E-value=1.6 Score=39.65 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=47.9
Q ss_pred eecCCHHHHHHHHHhCCCEEEEec-CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCC
Q 037779 144 CGCRNLGESLRRIREGAAMIRTKG-EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRL 222 (310)
Q Consensus 144 ~~v~t~~ea~~a~~~Gad~I~v~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~i 222 (310)
+.+.|++++..|.+.|||=|=... -..+ ++.+++.+++.+.+..++
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~~G---------------------------------GlTPS~g~i~~~~~~~~i 52 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPKEG---------------------------------GLTPSLGVLKSVRERVTI 52 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcCCC---------------------------------CcCCCHHHHHHHHHhcCC
Confidence 456789999999999998765431 1111 123456666666665567
Q ss_pred CEEEEc--cCC--CCCH-------HHHHHHHHcCCCEEEEcc
Q 037779 223 PVVHFA--AGG--VATP-------ADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 223 PVv~ia--~GG--I~t~-------~di~~~~~~GadgV~VGs 253 (310)
||.++. -|| ..|. +|++.+.++|+|||++|-
T Consensus 53 pv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~ 94 (248)
T PRK11572 53 PVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGV 94 (248)
T ss_pred CeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 764331 122 1222 356677788999999985
No 481
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.47 E-value=14 Score=34.03 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV 115 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa 115 (310)
+.++.+.+.|++++.... ..|. ..+...+ .++.+++.+ ++||++...-.. .+.++.+.++|+
T Consensus 26 ~~i~~l~~~Gv~gi~~~G--------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVG--------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGA 97 (292)
T ss_pred HHHHHHHHcCCCEEEECC--------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCC
Confidence 679999999999984320 0011 1122222 344444443 488887644321 246677888999
Q ss_pred Ceeee-cCC---CChhHHHHHHHh
Q 037779 116 DYVDE-SEV---LTPADEENHINK 135 (310)
Q Consensus 116 d~v~~-~~~---~~~~~~~~~~~~ 135 (310)
|++.. +.. .+..++.+.++.
T Consensus 98 d~v~~~pP~~~~~~~~~i~~~~~~ 121 (292)
T PRK03170 98 DGALVVTPYYNKPTQEGLYQHFKA 121 (292)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHH
Confidence 99873 221 233455554443
No 482
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=90.46 E-value=19 Score=35.36 Aligned_cols=51 Identities=31% Similarity=0.495 Sum_probs=41.1
Q ss_pred CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHHHHHcCC
Q 037779 222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQAVTNYS 276 (310)
Q Consensus 222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~~~~~~~ 276 (310)
+|| .+||++ +..+.++++ +|-|-| .+|.+++..+ .+..-+++|+++++++.
T Consensus 337 ~Pv---~sGG~~-~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rqA~ea~~ 390 (412)
T TIGR03326 337 FPV---SSGGLH-PGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAIDAII 390 (412)
T ss_pred eEe---cCCCCC-hhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHHHHHHHH
Confidence 465 689995 999999997 698865 4688899865 58888999999998744
No 483
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=90.43 E-value=1.8 Score=41.13 Aligned_cols=91 Identities=15% Similarity=0.032 Sum_probs=58.7
Q ss_pred ccceeeecCCccccCC--C-HHHHHHHHHcCCcEEEecccccchhhhcCCC----CCCCChHHHHHHHhhc-CcceEeec
Q 037779 28 VGLAQMLRGGVIMDVV--T-PEQARIAEEAGACAVMALERVPADIRAQGGV----ARMSDPQLIKQIKSSV-TIPVMAKA 99 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~--~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~----~~~~~~~~i~~i~~~~-~lPv~~kd 99 (310)
.|+..++|.|.-.+.. + .++++.++++|+++|.+-.+.... ..+.|. ....+.+.++++++.+ ++||+.+.
T Consensus 134 ~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~-~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nG 212 (333)
T PRK11815 134 IPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWL-KGLSPKENREIPPLDYDRVYRLKRDFPHLTIEING 212 (333)
T ss_pred CceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhh-cCCCccccccCCCcCHHHHHHHHHhCCCCeEEEEC
Confidence 5777877776543221 1 377999999999998432111100 001111 1123477888998875 89999999
Q ss_pred cccchHHHHHHHHcCCCeeee
Q 037779 100 RIGHFVEAQILEAIGVDYVDE 120 (310)
Q Consensus 100 ~i~~~~~~~~~~~aGad~v~~ 120 (310)
.+.+.++++.+.+ |+|.|.+
T Consensus 213 gI~s~eda~~~l~-~aDgVmI 232 (333)
T PRK11815 213 GIKTLEEAKEHLQ-HVDGVMI 232 (333)
T ss_pred CcCCHHHHHHHHh-cCCEEEE
Confidence 9987777776665 7999874
No 484
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=90.42 E-value=8.9 Score=34.54 Aligned_cols=174 Identities=15% Similarity=0.122 Sum_probs=103.4
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~ 123 (310)
.+.|..++++||++|..- + ..|.|.- ..+++..+++.++.|+=.-... +.+..+++.+.--+.+. .++.
T Consensus 24 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~L~~~~~~~lNlE~a~-t~em~~ia~~~kP~~vtLVPEk 93 (234)
T cd00003 24 VEAALLAEKAGADGITVH-L-REDRRHI-------QDRDVRLLRELVRTELNLEMAP-TEEMLEIALEVKPHQVTLVPEK 93 (234)
T ss_pred HHHHHHHHHcCCCEEEec-C-CCCcCcC-------CHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence 388999999999998432 1 1244443 3778999998888776332221 33566788888888875 3211
Q ss_pred ---CC-------------hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779 124 ---LT-------------PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMG 186 (310)
Q Consensus 124 ---~~-------------~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~ 186 (310)
++ ...+++.++..+..+-++++. ++++++.+.+.|||.|=.+ |+ |...
T Consensus 94 r~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-d~~qi~~A~~~GAd~VELhTG~-Ya~a------------- 158 (234)
T cd00003 94 REELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP-DPEQIEAAKEVGADRVELHTGP-YANA------------- 158 (234)
T ss_pred CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechh-hhcC-------------
Confidence 11 124455555555556666664 6778889999999999776 32 1100
Q ss_pred ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 037779 187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK 257 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~ 257 (310)
+..-..+ ..+..-....+... ...+-| =|.-|+ +.+++..+.+. +..-+-+|-+|+.
T Consensus 159 ----~~~~~~~------~el~~i~~aa~~a~-~~GL~V--nAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 159 ----YDKAERE------AELERIAKAAKLAR-ELGLGV--NAGHGL-NYENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred ----CCchhHH------HHHHHHHHHHHHHH-HcCCEE--ecCCCC-CHHHHHHHHhCCCCeEEccCHHHHH
Confidence 0000000 00000001111111 134555 578899 59999988875 8899999988875
No 485
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=90.42 E-value=0.87 Score=43.10 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=59.2
Q ss_pred ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc--------hhhhcC---CCC-CCCChHHHHHHHhhc--Cc
Q 037779 28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA--------DIRAQG---GVA-RMSDPQLIKQIKSSV--TI 93 (310)
Q Consensus 28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~--------d~r~~~---G~~-~~~~~~~i~~i~~~~--~l 93 (310)
.|+..+|+.+. ......++++.++++|+++|...|+... ....++ |.. .....+.++.+++.+ ++
T Consensus 203 ~Pv~vKl~~~~-~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 203 VPLLVKIAPDL-SDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCeEEEeCCCC-CHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 57777776432 1101247899999999999965552210 000011 110 011256788888888 79
Q ss_pred ceEeeccccchHHHHHHHHcCCCeee
Q 037779 94 PVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 94 Pv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
||+....+.+.+++..+..+|||.|.
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~ 307 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQ 307 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHh
Confidence 99999888887888777789999986
No 486
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=90.40 E-value=8.9 Score=34.61 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=109.6
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV 123 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~ 123 (310)
.+.|..++++||+.|..- + ..|.|.- ..++++.+++.++.|+=.-... +.+..+.+.+.-.+.+. .++.
T Consensus 24 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~l~~~~~~~lNlE~a~-~~emi~ia~~vkP~~vtLVPEk 93 (237)
T TIGR00559 24 LRAALIAEQAGADGITVH-L-REDRRHI-------QDRDVYDLKEALTTPFNIEMAP-TEEMIRIAEEIKPEQVTLVPEA 93 (237)
T ss_pred HHHHHHHHHcCCCEEEec-C-CCCcCcC-------CHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHcCCCEEEECCCC
Confidence 388999999999998432 1 1244443 3788999998888877332222 33566788888888875 3211
Q ss_pred ---------CC-------hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779 124 ---------LT-------PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMG 186 (310)
Q Consensus 124 ---------~~-------~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~ 186 (310)
+. ...+++.++..+..+-++++. ++++++.+.+.|||.|=.+ |+ |...
T Consensus 94 r~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-~~~qi~~A~~~GAd~VELhTG~-YA~a------------- 158 (237)
T TIGR00559 94 RDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA-DKDQISAAAEVGADRIEIHTGP-YANA------------- 158 (237)
T ss_pred CCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechh-hhcC-------------
Confidence 11 224455555555556666664 5778888999999999876 32 1100
Q ss_pred ceecccccCchhHHhhhccCCCcHHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHc-C-CCEEEEccccccCC--
Q 037779 187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQL-G-CDGVFVGSGVFKSG-- 259 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~-G-adgV~VGsai~~~~-- 259 (310)
+ +... .....+.+... .....+-| =|.-|+ +.+++..+.+. + ..-+-+|-+|+.--
T Consensus 159 ----~---~~~~-------~~~el~~i~~aa~~A~~lGL~V--nAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~Al~ 221 (237)
T TIGR00559 159 ----Y---NKKE-------MAEELQRIVKASVHAHSLGLKV--NAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADAVY 221 (237)
T ss_pred ----C---Cchh-------HHHHHHHHHHHHHHHHHcCCEE--ecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHHHH
Confidence 0 0000 00001111111 11134555 678899 59999998775 5 79999998887521
Q ss_pred -CHHHHHHHHHHHH
Q 037779 260 -DPVRRARAIVQAV 272 (310)
Q Consensus 260 -dp~~~~~~~~~~~ 272 (310)
-..+.+++|++.+
T Consensus 222 ~Gl~~AV~~m~~~~ 235 (237)
T TIGR00559 222 LGLEEAIREMRDLI 235 (237)
T ss_pred HhHHHHHHHHHHHH
Confidence 1234455555444
No 487
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=90.40 E-value=14 Score=33.64 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=52.4
Q ss_pred cccCCCHHHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHH-HHHh--hcCcceEeeccccchHHHHHHHHcC
Q 037779 39 IMDVVTPEQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIK-QIKS--SVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 39 i~~~~~~~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~-~i~~--~~~lPv~~kd~i~~~~~~~~~~~aG 114 (310)
.....++.+++.+...|+|++ .+++ + |.. +.+.+. .++. ..+..++++.--.....++.+.++|
T Consensus 17 ~~~~~~p~~~e~~~~~g~D~v~iDlE-------H--~~~---~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~G 84 (249)
T TIGR02311 17 WLGLADPYAAEICAGAGFDWLLIDGE-------H--APN---DVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIG 84 (249)
T ss_pred EEeCCCcHHHHHHHhcCCCEEEEecc-------C--CCC---CHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCC
Confidence 344566899999999999997 2332 1 110 122222 2222 2345555553333334678889999
Q ss_pred CCeeeecCCCChhHHHHHHHh
Q 037779 115 VDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 115 ad~v~~~~~~~~~~~~~~~~~ 135 (310)
++.|+.+...+++++.+..+.
T Consensus 85 a~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 85 AQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred CCEEEecCcCCHHHHHHHHHH
Confidence 999998877777777666654
No 488
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=90.36 E-value=1.8 Score=39.69 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCcEEEecc-ccc-ch-hhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHc--CCCeeee
Q 037779 46 EQARIAEEAGACAVMALE-RVP-AD-IRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAI--GVDYVDE 120 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~-~~~-~d-~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~a--Gad~v~~ 120 (310)
+.|+.+.+.||+.| +++ ..+ .+ .... ...++.+++.+++|+++... +.+-++.+.++ |++.|-.
T Consensus 29 ~~A~~~~~~GAdiI-DVg~~~~~~eE~~r~--------~~~v~~l~~~~~~plsIDT~--~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 29 KLALKQAEAGADYL-DVNAGTAVEEEPETM--------EWLVETVQEVVDVPLCIDSP--NPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred HHHHHHHHCCCCEE-EECCCCCchhHHHHH--------HHHHHHHHHhCCCCEEEeCC--CHHHHHHHHHhCCCCCEEEe
Confidence 67899999999998 775 111 11 1100 33566677777899877644 23455666666 9998862
Q ss_pred cCCCC--hhHHHHHHHhcC
Q 037779 121 SEVLT--PADEENHINKHN 137 (310)
Q Consensus 121 ~~~~~--~~~~~~~~~~~~ 137 (310)
..... .+.....+++++
T Consensus 98 Is~~~~~~~~~~~l~~~~g 116 (261)
T PRK07535 98 VSAEGEKLEVVLPLVKKYN 116 (261)
T ss_pred CCCCCccCHHHHHHHHHhC
Confidence 22211 334555555543
No 489
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=90.25 E-value=18 Score=34.85 Aligned_cols=47 Identities=34% Similarity=0.642 Sum_probs=36.6
Q ss_pred CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCCC-HHHHHHHHHHHH
Q 037779 222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSGD-PVRRARAIVQAV 272 (310)
Q Consensus 222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~d-p~~~~~~~~~~~ 272 (310)
.|+ .+||++ +..+.++++ +|.|-+ .+|..++..++ +.+-+++|++++
T Consensus 315 ~Pv---~sgG~~-~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~a~rqa~ 364 (364)
T cd08210 315 LPA---PGGGMS-VERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTRAFVEAV 364 (364)
T ss_pred cCc---CCCCcC-HHHHHHHHHHcCCcEEEEccccccCCCCChHHHHHHHHhhC
Confidence 477 479994 899999997 587744 46789999887 888888888763
No 490
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=90.16 E-value=0.87 Score=43.27 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=58.8
Q ss_pred cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc--------CCChh
Q 037779 209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN--------YSDPD 279 (310)
Q Consensus 209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~--------~~~~~ 279 (310)
+++.+..+++. .++||+. =..=| ++-++.++..+|||+|++--+++.. ..++.|.+..+. -++..
T Consensus 168 s~e~L~~vr~~~v~lPvLr-KDFII-D~yQI~eAr~~GADAVLLIaaiL~~----~~L~~l~~~A~~LGme~LVEVH~~~ 241 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLC-KEFIV-DAWQIYYARSKGADAILLIAAVLPD----LDIKYMLKICKSLGMAALIEVHDER 241 (338)
T ss_pred CHHHHHHHHHcCCCCCEee-ccccC-CHHHHHHHHHcCCCcHHHHHHhCCH----HHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 56677888876 7889863 23334 7999999999999999999988863 245555555444 34445
Q ss_pred hHHhhhhccCCceeccccccc
Q 037779 280 VLAEVSCGLGEAMVGIDLNDV 300 (310)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~ 300 (310)
-+.......|..+.||.=.|.
T Consensus 242 ElerAl~~~ga~iIGINNRdL 262 (338)
T PLN02460 242 EMDRVLGIEGVELIGINNRSL 262 (338)
T ss_pred HHHHHHhcCCCCEEEEeCCCC
Confidence 555544433888888864443
No 491
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.08 E-value=4.6 Score=34.27 Aligned_cols=115 Identities=19% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhh--cCcceEeecccc---chHH----HHHHHHcC
Q 037779 45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSS--VTIPVMAKARIG---HFVE----AQILEAIG 114 (310)
Q Consensus 45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~--~~lPv~~kd~i~---~~~~----~~~~~~aG 114 (310)
.+.++.+.+.|++++...- ..++..+ ......+.++++++. .++|+++..... ..+. .+.+...|
T Consensus 68 ~~~a~~a~~~Gad~i~v~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g 142 (201)
T cd00945 68 VAEVEEAIDLGADEIDVVI-----NIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG 142 (201)
T ss_pred HHHHHHHHHcCCCEEEEec-----cHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4789999999999985431 1111000 000114556677777 489998865432 1122 23345689
Q ss_pred CCeeeecCC-----CChhHHHHHHHhcCCC--CcEEeecCCHHHHHHHHHhCCCEEE
Q 037779 115 VDYVDESEV-----LTPADEENHINKHNFR--VPFVCGCRNLGESLRRIREGAAMIR 164 (310)
Q Consensus 115 ad~v~~~~~-----~~~~~~~~~~~~~~~~--l~v~~~v~t~~ea~~a~~~Gad~I~ 164 (310)
++.|-.+.. .+...+.........+ +.+..+.++++.+..+...|++-+.
T Consensus 143 ~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~ 199 (201)
T cd00945 143 ADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIG 199 (201)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceee
Confidence 999864322 1334443333322223 3344456667888888888987654
No 492
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=90.07 E-value=4.1 Score=37.15 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCcEEEecccccchhhhcC--CC-CCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC
Q 037779 46 EQARIAEEAGACAVMALERVPADIRAQG--GV-ARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE 122 (310)
Q Consensus 46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~--G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~ 122 (310)
+.|+.+.+.||+.| +++..++-+.... .. ....-...++.+++.+++|+++..+ +.+-++.+.++|++.|....
T Consensus 28 ~~a~~~~~~GAdiI-DvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~--~~~v~~aaL~~g~~iINdis 104 (258)
T cd00423 28 EHARRMVEEGADII-DIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTF--NAEVAEAALKAGADIINDVS 104 (258)
T ss_pred HHHHHHHHCCCCEE-EECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC--cHHHHHHHHHhCCCEEEeCC
Confidence 67899999999998 7762222110000 00 0000023455666666888866544 33566778889999886322
Q ss_pred CCCh-hHHHHHHHhcC
Q 037779 123 VLTP-ADEENHINKHN 137 (310)
Q Consensus 123 ~~~~-~~~~~~~~~~~ 137 (310)
..+. +++.+.+++++
T Consensus 105 ~~~~~~~~~~l~~~~~ 120 (258)
T cd00423 105 GGRGDPEMAPLAAEYG 120 (258)
T ss_pred CCCCChHHHHHHHHcC
Confidence 2222 45555555443
No 493
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=89.95 E-value=1.3 Score=36.39 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=34.6
Q ss_pred HHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779 211 DLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273 (310)
Q Consensus 211 ~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~ 273 (310)
++++.+++.. +++| ++ ||....++..++.++|.|++. ....++.+.++.+.+.+.
T Consensus 72 ~~~~~L~~~g~~~i~v--iv-GG~~~~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 72 ALRKELDKLGRPDILV--VV-GGVIPPQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKLR 128 (132)
T ss_pred HHHHHHHhcCCCCCEE--EE-eCCCChHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHHH
Confidence 4555555532 4555 33 665457789999999998864 233367777777766553
No 494
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=89.83 E-value=1.9 Score=38.37 Aligned_cols=75 Identities=25% Similarity=0.185 Sum_probs=54.2
Q ss_pred cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779 41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD 119 (310)
Q Consensus 41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~ 119 (310)
++.+.+.++.+.+.|++.|-.....||.-+ .+. ...-.+.++.+++...+|+.+..+++. +.+..+.++||++|.
T Consensus 110 S~h~~eea~~A~~~g~DYv~~GpifpT~tK--~~~-~~~G~~~l~~~~~~~~iP~vAIGGi~~-~nv~~v~~~Ga~gVA 184 (211)
T COG0352 110 STHDLEEALEAEELGADYVGLGPIFPTSTK--PDA-PPLGLEGLREIRELVNIPVVAIGGINL-ENVPEVLEAGADGVA 184 (211)
T ss_pred ecCCHHHHHHHHhcCCCEEEECCcCCCCCC--CCC-CccCHHHHHHHHHhCCCCEEEEcCCCH-HHHHHHHHhCCCeEE
Confidence 455789999999999999844333333221 111 233477888888888899988877763 567889999999997
No 495
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=89.78 E-value=2.9 Score=37.07 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=52.4
Q ss_pred hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee--ec----CCCChh----HHHHHHHhcCCC-CcEEeecCCH
Q 037779 81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD--ES----EVLTPA----DEENHINKHNFR-VPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~--~~----~~~~~~----~~~~~~~~~~~~-l~v~~~v~t~ 149 (310)
.+.++.+++. ++++.+-... +..++..+..+||++|. .. ....+. ++.+.++.++.. ..+.++++|+
T Consensus 91 l~ai~~L~~~-gi~v~~T~V~-s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~ 168 (211)
T cd00956 91 LKAIKKLSEE-GIKTNVTAIF-SAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNP 168 (211)
T ss_pred HHHHHHHHHc-CCceeeEEec-CHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCH
Confidence 4455555444 5555443322 34677778889999965 11 111222 444444444433 2377799999
Q ss_pred HHHHHHHHhCCCEEEEe
Q 037779 150 GESLRRIREGAAMIRTK 166 (310)
Q Consensus 150 ~ea~~a~~~Gad~I~v~ 166 (310)
.|+..+...|+|++++.
T Consensus 169 ~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 169 QHVIEAALAGADAITLP 185 (211)
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 99999999999999985
No 496
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.76 E-value=17 Score=33.70 Aligned_cols=172 Identities=18% Similarity=0.211 Sum_probs=93.3
Q ss_pred HHHHHH----HHcCCcEEEe--cc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779 46 EQARIA----EEAGACAVMA--LE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV 118 (310)
Q Consensus 46 ~~a~~~----~~~Ga~~I~~--l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v 118 (310)
+.|+.+ .+.|+..+-- .- ...|.+..|.|-....-++.++++++.+++|++-- +....+++.+.+. +|.+
T Consensus 34 ~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTe--V~~~~~~~~~ae~-vDil 110 (281)
T PRK12457 34 DVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITD--VHEVEQAAPVAEV-ADVL 110 (281)
T ss_pred HHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEE--eCCHHHHHHHhhh-CeEE
Confidence 445554 4689887511 00 12244556665443445778899999999999653 2223456666666 7877
Q ss_pred eecCC-CChhHHHHHHHhcCCCCcEEee---cCCHHHHH----HHHHhCCC-EEEEe-cCCCCCchHHHHHHHHHhhcce
Q 037779 119 DESEV-LTPADEENHINKHNFRVPFVCG---CRNLGESL----RRIREGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGDI 188 (310)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~----~a~~~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~~ 188 (310)
-+.+. ....++.+.+.+ .+.++.+. .-+++|.. +....|.. ++-.. |..++.+
T Consensus 111 QIgAr~~rntdLL~a~~~--t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~--------------- 173 (281)
T PRK12457 111 QVPAFLARQTDLVVAIAK--TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYD--------------- 173 (281)
T ss_pred eeCchhhchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCC---------------
Confidence 65532 234456655554 23455442 13455543 33345664 33333 3222111
Q ss_pred ecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEcc-------------CCCCC--HHHHHHHHHcCCCEEEEc
Q 037779 189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAA-------------GGVAT--PADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~-------------GGI~t--~~di~~~~~~GadgV~VG 252 (310)
+...+..-+..+++. .++||+.-++ ||... +.-++..+..|+||+++=
T Consensus 174 ----------------~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iE 237 (281)
T PRK12457 174 ----------------NLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLE 237 (281)
T ss_pred ----------------CcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 112244555667774 5789976543 33211 122456667899999987
Q ss_pred c
Q 037779 253 S 253 (310)
Q Consensus 253 s 253 (310)
+
T Consensus 238 v 238 (281)
T PRK12457 238 A 238 (281)
T ss_pred e
Confidence 5
No 497
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=89.73 E-value=3.1 Score=40.40 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred HcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEe----eccccch--------HHHHHHHHcCCCeee
Q 037779 53 EAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMA----KARIGHF--------VEAQILEAIGVDYVD 119 (310)
Q Consensus 53 ~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~----kd~i~~~--------~~~~~~~~aGad~v~ 119 (310)
++||..=+.+++.+.|+ ++.++++++.+ +.|+.. +..+|+. .+++...+.|.|.+-
T Consensus 48 WGGATFDaciRfLnEDP-----------WeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfR 116 (472)
T COG5016 48 WGGATFDACIRFLNEDP-----------WERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFR 116 (472)
T ss_pred cCCccHHHHHHHhcCCH-----------HHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEE
Q ss_pred ----ecCCCChhHHHHHHHhcCCCCcEEee-----cCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc
Q 037779 120 ----ESEVLTPADEENHINKHNFRVPFVCG-----CRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG 186 (310)
Q Consensus 120 ----~~~~~~~~~~~~~~~~~~~~l~v~~~-----v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~ 186 (310)
..+..+....++.+++++.......+ +||.+ -++...+.|+|.|++.-..+.-+...+
T Consensus 117 iFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~a--------- 187 (472)
T COG5016 117 IFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEA--------- 187 (472)
T ss_pred echhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHH---------
Q ss_pred ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE---ccCCCCCHHHHHHHHHcCCCEE
Q 037779 187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF---AAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i---a~GGI~t~~di~~~~~~GadgV 249 (310)
+++++.+++..++||. + +..|+ +.-...++.++|+|++
T Consensus 188 -----------------------yelVk~iK~~~~~pv~-lHtH~TsG~-a~m~ylkAvEAGvD~i 228 (472)
T COG5016 188 -----------------------YELVKAIKKELPVPVE-LHTHATSGM-AEMTYLKAVEAGVDGI 228 (472)
T ss_pred -----------------------HHHHHHHHHhcCCeeE-Eecccccch-HHHHHHHHHHhCcchh
No 498
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=89.72 E-value=19 Score=34.40 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=37.4
Q ss_pred cHHHHHHH----HhcC------CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779 209 PYDLVMQT----KQLG------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~l~~~i----~~~~------~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~ 257 (310)
.+++++.+ .+.. ++|+|.=-++|+ +.+++++++++|..-|=++|.+-.
T Consensus 223 ~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~-~~e~i~kai~~GI~KiNi~T~l~~ 280 (345)
T cd00946 223 QPEILGEHQDYVREKLGLADDKPLYFVFHGGSGS-TKEEIREAISYGVVKMNIDTDTQW 280 (345)
T ss_pred CHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCC-CHHHHHHHHHcCCeeEEeCcHHHH
Confidence 56777777 3332 688876667777 479999999999999999998765
No 499
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.71 E-value=1.5 Score=42.34 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=47.7
Q ss_pred CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc----ccccCCCHHHHHHHHHHHH
Q 037779 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS----GVFKSGDPVRRARAIVQAV 272 (310)
Q Consensus 208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs----ai~~~~dp~~~~~~~~~~~ 272 (310)
.+|+.++++++..++||++ -||.+++++..+.++|+|+|.|+. -+...+.+...+.++.+++
T Consensus 215 ~~w~~i~~l~~~~~~Pviv---KGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av 280 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYV---KGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAV 280 (367)
T ss_pred CCHHHHHHHHHhcCCCEEE---eCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHh
Confidence 3688889998877899963 789999999999999999998754 4554444556666666655
No 500
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=89.67 E-value=22 Score=34.87 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=40.0
Q ss_pred EccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHHHHHcCCC
Q 037779 227 FAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQAVTNYSD 277 (310)
Q Consensus 227 ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~~~~~~~~ 277 (310)
+++||++ +..+..+++ +|-|-+ .+|.+++..+ .+..-+++|+++++++..
T Consensus 328 v~sGG~~-~~~~p~~~~~~G~D~il~~GGgi~gHp~G~~aGa~A~rqA~ea~~~ 380 (407)
T PRK09549 328 VPSAGIH-PGLVPLLIRDFGKDVVINAGGGIHGHPNGAQGGGKAFRAAIDAVLQ 380 (407)
T ss_pred eecCCCC-hhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHHHc
Confidence 3689995 999999997 698865 4688899865 588888999999887543
Done!