RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037779
(310 letters)
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase,
pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium
berghei} PDB: 4adu_A* 4ads_A
Length = 297
Score = 391 bits (1006), Expect = e-138
Identities = 168/289 (58%), Positives = 220/289 (76%)
Query: 15 IYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGG 74
+ + +K G +ML+GGVIMDV EQA+IAE+AGA VM LE +P+++R G
Sbjct: 1 MRDYADNDSILLKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDG 60
Query: 75 VARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHIN 134
VAR DP I++I+ ++I V+AK RIGHFVEAQILE + VD +DESEVLT ADE NHIN
Sbjct: 61 VARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHIN 120
Query: 135 KHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194
KH F+ PFVCGC NLGE+LRRI EGA+MIRTKGEAGTGNI+EA++H+R+V +I+ L ++
Sbjct: 121 KHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSL 180
Query: 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
D+ EV+ FAK + AP DL++ T++L RLPVV+FAAGG+ATPADAAM MQLG DGVFVGSG
Sbjct: 181 DESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSG 240
Query: 255 VFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE 303
+F+S +P + A +IV AV+N+++P +L VS GLG+AM G K +
Sbjct: 241 IFESENPQKMASSIVMAVSNFNNPKILLNVSLGLGKAMHGNTKVSNKWK 289
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.65A {Thermus
thermophilus} PDB: 2iss_A*
Length = 297
Score = 390 bits (1002), Expect = e-137
Identities = 206/293 (70%), Positives = 247/293 (84%), Gaps = 1/293 (0%)
Query: 17 ETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVA 76
+K F +K G A+M +GGVIMDV TPEQA IAEEAGA AVMALERVPADIRAQGGVA
Sbjct: 3 GGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA 62
Query: 77 RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKH 136
RMSDP++IK+I ++V+IPVMAK RIGHFVEA ILEAIGVD++DESEVLTPADEE+HI+K
Sbjct: 63 RMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKW 122
Query: 137 NFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD 196
F+VPFVCG RNLGE+LRRI EGAAMIRTKGEAGTGN+VEAVRH R++ +IR ++++ +
Sbjct: 123 KFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLRE 182
Query: 197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256
DE+ +AK I AP++LV GRLPVV+FAAGG+ATPADAA+MM LG DGVFVGSG+F
Sbjct: 183 DELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIF 242
Query: 257 KSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE-RYANR 308
KSGDP +RARAIV+AV +Y+DP+VLAEVS LGE MVGI+L+ +K E R A R
Sbjct: 243 KSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKR 295
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel,
pyridoxal 5-phosphate synthase, PLP G3 SNO1,
biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces
cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Length = 291
Score = 384 bits (987), Expect = e-135
Identities = 169/284 (59%), Positives = 216/284 (76%), Gaps = 1/284 (0%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
ML+GGVIMDVVTPEQA+IAE++GACAVMALE +PAD+R G V RMSDP++IK
Sbjct: 2 HHHHHHGMLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIK 61
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
I +SV+IPVMAK RIGHFVEAQI+EA+ VDY+DESEVLTPAD +HI K F+VPFVCG
Sbjct: 62 DIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCG 121
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD-DEVFTFAK 204
++LGE+LRRI EGAAMIRTKGEAGTG++ EAV+H+R + +I+ + + D++ A+
Sbjct: 122 AKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAE 181
Query: 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
+ P L+ + G+LPVV+FAAGGVATPADAA++MQLGCDGVFVGSG+FKS +PVR
Sbjct: 182 EMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRL 241
Query: 265 ARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANR 308
A A+V+A T++ +P L EVS LGE M G+ + + R
Sbjct: 242 ATAVVEATTHFDNPSKLLEVSSDLGELMGGVSIESISHASNGVR 285
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase;
2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Length = 305
Score = 382 bits (983), Expect = e-134
Identities = 184/295 (62%), Positives = 241/295 (81%), Gaps = 1/295 (0%)
Query: 15 IYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGG 74
+ + VK G+A+M +GGVIMDV+ EQA+IAEEAGA AVMALERVPADIRA GG
Sbjct: 1 MASMAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGG 60
Query: 75 VARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHIN 134
VARM+DP +++++ ++V+IPVMAKARIGH VEA++LEA+GVDY+DESEVLTPADEE H+N
Sbjct: 61 VARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLN 120
Query: 135 KHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194
K+ + VPFVCGCR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V +R + M
Sbjct: 121 KNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAM 180
Query: 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
+DE+ T AKN+ APY+L++Q K+ G+LPVV+FAAGGVATPADAA+MMQLG DGVFVGSG
Sbjct: 181 SEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 240
Query: 255 VFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308
+FKS +P + A+AIV+A T+++D ++AE+S LG AM GI+++++ +R R
Sbjct: 241 IFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQER 295
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 366 bits (939), Expect = e-127
Identities = 192/329 (58%), Positives = 228/329 (69%), Gaps = 38/329 (11%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
KK +K G A+M++ GV+MDV EQA+IAEEAGA AVMALERVPADIRA GGVARMS
Sbjct: 2 KKGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS 61
Query: 80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
DP LI++I +V+IPVMAK RIGH EA +LEAIGVD +DESEVLT AD HI K F
Sbjct: 62 DPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFN 121
Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
VPFVCG RNLGE++RRI EGAAMIRTKGEAGTGNIVEAVRH+R + I L+ M D+EV
Sbjct: 122 VPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEV 181
Query: 200 FTFAKN-------------------------------------IAAPYDLVMQTKQLGRL 222
+ AK I Y+++++ K+LGRL
Sbjct: 182 YGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRL 241
Query: 223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLA 282
PVV+FAAGGVATPADAA+MMQLG DGVFVGSG+FKS +P+ RARAIV+A NY PD++A
Sbjct: 242 PVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVA 301
Query: 283 EVSCGLGEAMVGIDLNDVKV-ERYANRSD 310
EVS LGEAM GID+ + E+ R D
Sbjct: 302 EVSKNLGEAMKGIDITQISEAEKMQYRGD 330
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 85.0 bits (210), Expect = 1e-19
Identities = 43/268 (16%), Positives = 85/268 (31%), Gaps = 60/268 (22%)
Query: 27 KVGLAQMLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVA--RMSDPQL 83
K L + L+GG+I+ P + +E G +MA + G R + +
Sbjct: 7 KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQ------EAGAVGIRANSVRD 60
Query: 84 IKQIKSSVTIPVMAKARIGH----------FVEAQILEAIGVDYV-------DESEVLTP 126
IK+I++ +P++ + + E L A+ + + D + L
Sbjct: 61 IKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDI 120
Query: 127 ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG 186
A + + + E L + G + T T +
Sbjct: 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQE--------- 171
Query: 187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC 246
L+ + G + V+ A G + +P +A + LG
Sbjct: 172 -------------------AGPDVALIEALCKAG-IAVI--AEGKIHSPEEAKKINDLGV 209
Query: 247 DGVFVGSGVFKSGDPVRRARAIVQAVTN 274
G+ VG + P A ++A+ +
Sbjct: 210 AGIVVGGAIT---RPKEIAERFIEALKS 234
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 77.4 bits (190), Expect = 6e-17
Identities = 45/264 (17%), Positives = 81/264 (30%), Gaps = 57/264 (21%)
Query: 27 KVGLAQMLRGGVIMDVVTPEQARIAE---EAGACAVMALERVPADIRAQGGVARMSDPQL 83
++ GG+I+ Q + A MAL A +A R+
Sbjct: 9 QLDKNIAASGGLIVSC----QPVPGSPLDKPEIVAAMAL----AAEQAGAVAVRIEGIDN 60
Query: 84 IKQIKSSVTIPVMAKARIGH----------FVEAQILEAIGVDYV--DESEVLTPADEEN 131
++ +S V++P++ + + L G + D + P E
Sbjct: 61 LRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEA 120
Query: 132 HINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV 190
+ + H+ + + C ++ + L R GA +I T T
Sbjct: 121 LLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTT------------------ 162
Query: 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250
LV G V+ A G +PA AA ++ G V
Sbjct: 163 -----------PDTPEEPDLPLVKALHDAG-CRVI--AEGRYNSPALAAEAIRYGAWAVT 208
Query: 251 VGSGVFKSGDPVRR-ARAIVQAVT 273
VGS + + A+ +A +
Sbjct: 209 VGSAITRLEHICGWYNDALKKAAS 232
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 53.9 bits (129), Expect = 9e-09
Identities = 41/251 (16%), Positives = 79/251 (31%), Gaps = 50/251 (19%)
Query: 27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQ 86
++ + GG+I+ + + + A MA A A R+ + ++
Sbjct: 9 RLEQSVHENGGLIVSCQPVPGSPMDKPEIVAA-MAQ----AAASAGAVAVRIEGIENLRT 63
Query: 87 IKSSVTIPVMAKARIGH----------FVEAQILEAIGVDYV--DESEVLTPADEENHIN 134
++ +++P++ + + L G D + D S P D ++ +
Sbjct: 64 VRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLT 123
Query: 135 KHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN 193
+ C + E + ++G I T TG I
Sbjct: 124 RIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPIT------------------ 165
Query: 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ +V Q G V+ A G TPA AA ++ G V VGS
Sbjct: 166 -----------PVEPDLAMVTQLSHAG-CRVI--AEGRYNTPALAANAIEHGAWAVTVGS 211
Query: 254 GVFKSGDPVRR 264
+ + +
Sbjct: 212 AITRIEHICQW 222
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 51.8 bits (125), Expect = 5e-08
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
++PV+ A G+ +P DAA M+LG DGV + + V + DPV+ ARA+ AV
Sbjct: 178 KVPVIVDA--GIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAV 227
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 51.8 bits (125), Expect = 6e-08
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
++PV+ A GV T +DAA+ M+LGC+ V + + + + DPV A A+ A+
Sbjct: 187 KVPVLVDA--GVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 51.8 bits (125), Expect = 6e-08
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
+ L + ++ PVV A G+ P+ AA +M+LG D V V + + ++ DP
Sbjct: 162 VRTRALLELFAREKASLPPVVVDA--GLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAM 219
Query: 265 ARAIVQAV 272
A A AV
Sbjct: 220 AEAFRLAV 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-07
Identities = 53/234 (22%), Positives = 72/234 (30%), Gaps = 64/234 (27%)
Query: 114 GVDYVDES----EVLTPADE---EN------HINKHNFRVPFVCGCRNLGESLRRIREG- 159
G+D S +V AD + I +N P GE +RIRE
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN---PVNLTIHFGGEKGKRIRENY 1688
Query: 160 AAMIRTKGEAGTGN----IVEAVRHVRSVM--GDIRVLRNMDDDEVFT----FAKNIAAP 209
+AMI G E H S + +L FT AA
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----FTQPALTLMEKAAF 1744
Query: 210 YDLVMQTKQLGRLPVVHFAAG---G----VATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262
DL K G +P AG G +A+ AD M + V V VF
Sbjct: 1745 EDL----KSKGLIPADATFAGHSLGEYAALASLADV---MSIE-SLVEV---VFY----- 1788
Query: 263 RRARAIVQAV----TNYSDPDVLAEVSCGLGEAMVGIDLNDVK--VERYANRSD 310
R + AV S+ ++A G ++ VER R+
Sbjct: 1789 -RGMTMQVAVPRDELGRSNYGMIA---INPGRVAASFSQEALQYVVERVGKRTG 1838
Score = 49.7 bits (118), Expect = 9e-07
Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 87/264 (32%)
Query: 22 SPFSVK-VGLAQM--------------------LRG--GVIMDVVTPEQARIA-----EE 53
P S +G+ Q+ L+G G +VT IA E
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA--VAIAETDSWES 291
Query: 54 AGACAVMALERVPADI--RAQGGVARMS-DPQLIKQ-IKSSVTIPV-MAKARIGHFVEAQ 108
A+ V I R S P +++ ++++ +P M + +
Sbjct: 292 FFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-N--LTQE 347
Query: 109 ILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLG--ESLRRIREGAAMIRTK 166
++ DYV+++ PA ++ I+ N V G +SL + +R K
Sbjct: 348 QVQ----DYVNKTNSHLPAGKQVEISLVNGAKNLVVS----GPPQSLYGLN---LTLR-K 395
Query: 167 GEAGTGNIVEAVRH-VRSVMGDIRVLRNMDDDEVFTFAKNIAAPY--------------D 211
+A +G + R + R L +A+P+ D
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLP-------------VASPFHSHLLVPASDLINKD 442
Query: 212 LVMQT-----KQLGRLPVVHFAAG 230
LV K + ++PV G
Sbjct: 443 LVKNNVSFNAKDI-QIPVYDTFDG 465
Score = 36.6 bits (84), Expect = 0.010
Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 69/176 (39%)
Query: 185 MGDIRVLRNMDDDEVFTFAKNI---AAPY----------DLVMQ-TKQLGRLPVVHF-AA 229
MG MD + A+++ A + D+V+ L +HF
Sbjct: 1631 MG-------MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL----TIHFGGE 1679
Query: 230 GGVATPAD-AAMMMQLGCDGVFVGSGVFKSGDPVRR------------------------ 264
G + +AM+ + DG +FK +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 265 ARAIVQAV---TNYSDPDVLAEVSCG--LGE--AMVG----IDLND-VKVERYANR 308
+A + + A G LGE A+ + + V+V Y R
Sbjct: 1740 EKAAFEDLKSKGLIPADATFA----GHSLGEYAALASLADVMSIESLVEVVFY--R 1789
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 49.6 bits (118), Expect = 3e-07
Identities = 39/248 (15%), Positives = 66/248 (26%), Gaps = 64/248 (25%)
Query: 43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG 102
+ + A A E GA + R + + I IK +V +PV+ +
Sbjct: 24 IMSKMALAAYEGGAVGI-----------------RANTKEDILAIKETVDLPVIGIVKRD 66
Query: 103 H----------FVEAQILEAIGVDYV------DESEVLTPADEENHINKHNFRVPFVCGC 146
+ E L + + + T + ++I H V +
Sbjct: 67 YDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI 126
Query: 147 RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI 206
+ E+ R G I T T
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQ--------------------------LLY 160
Query: 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR 266
+ + Q V+ A G V TP +M LG VG + P +
Sbjct: 161 QNDFQFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGGAI---TRPKEITK 215
Query: 267 AIVQAVTN 274
VQ + +
Sbjct: 216 RFVQVMED 223
Score = 36.1 bits (83), Expect = 0.009
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 38 VIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA 97
++ D+ T E+A+ A G + + +D Q +K + SV V+A
Sbjct: 122 IMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLY-QNDFQFLKDVLQSVDAKVIA 180
Query: 98 KARIGHFVEAQILEAIGVDYV 118
+ + + + +GV
Sbjct: 181 EGNVITPDMYKRVMDLGVHCS 201
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
G++T D ++LG GV + SGV K+ DP + +V +
Sbjct: 183 AGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 225
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 40.3 bits (95), Expect = 3e-04
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
G+ + D A ++LG GV + S K+ DP + + + ++
Sbjct: 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSEL 225
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid,
diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A
{Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Length = 262
Score = 39.8 bits (94), Expect = 5e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
L+ + K++ PV A G G++ P + Q G DGV +GS A+V
Sbjct: 191 SLIQEVKKVTNKPV---AVGFGISKPEHVKQIAQWGADGVIIGS-------------AMV 234
Query: 270 QAVTNYSDPDVLAE 283
+ + + P
Sbjct: 235 RQLGEAASPKQGLR 248
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 39.6 bits (92), Expect = 6e-04
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
K+L + GG+ + + + G G+ ++ +P ARA +
Sbjct: 162 KKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRI 219
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 39.1 bits (92), Expect = 7e-04
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
G++ D + LG +GV + SGV K+ + R +++ +
Sbjct: 176 GAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIKFI 219
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 39.1 bits (92), Expect = 8e-04
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 216 TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
+Q +P+V GG+ T +AA ++Q G DGV + S + ++ DP AR + + Y
Sbjct: 167 RRQGISIPIV--GIGGI-TIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTY 223
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 38.8 bits (90), Expect = 0.001
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA 265
+A + K+L + GG+ D + + G + + PV A
Sbjct: 146 VAWGEADITAIKRLSDMGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRDAASPVEAA 204
Query: 266 RAIVQAVTNY 275
R +++
Sbjct: 205 RQFKRSIAEL 214
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 38.4 bits (90), Expect = 0.001
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
L+ KQ +PV+ A GG+ TP + Q G DG+ V SG+F S +P+ AR +
Sbjct: 154 SLLSDIKQRISIPVI--AIGGM-TPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSR 210
Query: 271 AV 272
+
Sbjct: 211 KL 212
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR 266
A LV +LG FA GG+ ++ G + V + + DP A
Sbjct: 175 APGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAE 233
Query: 267 AIVQAVT 273
+ A+T
Sbjct: 234 QLRSALT 240
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 38.0 bits (89), Expect = 0.002
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
+ + + + ++PVV A GG+ +A +++ G DG+ V S V + D + + +
Sbjct: 152 EGLRKIVESVKIPVV--AIGGI-NKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRK 208
Query: 271 AV 272
V
Sbjct: 209 IV 210
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 37.3 bits (86), Expect = 0.003
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 22/133 (16%)
Query: 159 GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV--------------LRNMDDDEV----- 199
GA ++ G A I AV+ ++ + V +R + V
Sbjct: 77 GADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAG 136
Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
+ ++ + R+P AGGV A + + G + G ++ +
Sbjct: 137 LDEQAKPGFDLNGLLAAGEKARVPFS--VAGGV-KVATIPAVQKAGAEVAVAGGAIYGAA 193
Query: 260 DPVRRARAIVQAV 272
DP A+ + A+
Sbjct: 194 DPAAAAKELRAAI 206
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB:
1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A*
1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A*
1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Length = 268
Score = 36.7 bits (86), Expect = 0.005
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
L+ + K+ P G G+++P + ++ G G GS AIV
Sbjct: 195 HLIEKLKEYHAAPA---LQGFGISSPEQVSAAVRAGAAGAISGS-------------AIV 238
Query: 270 QAV-TNYSDPDVLAE 283
+ + N + P +
Sbjct: 239 KIIEKNLASPKQMLA 253
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural
genomics, CSG center for structural genomics of
infectious diseases; 2.10A {Vibrio cholerae o1 biovar el
tor}
Length = 271
Score = 36.8 bits (86), Expect = 0.006
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
L+ + +Q P G G++ PA ++ G G GS A+V
Sbjct: 198 ALLERLQQFDAPPA---LLGFGISEPAQVKQAIEAGAAGAISGS-------------AVV 241
Query: 270 QAVTNYSD 277
+ + + D
Sbjct: 242 KIIETHLD 249
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 36.6 bits (85), Expect = 0.009
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
L+ Q ++ +PVV AAGG+ A ++ G D +G+
Sbjct: 198 SLLAQVREAVDIPVV--AAGGIMRGGQIAAVLAAGADAAQLGT 238
Score = 33.1 bits (76), Expect = 0.089
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 35 RGGVIMDVVT-PEQARIAEEAGACAVMA--LE----RVPADIRAQGGVARMSDPQLIKQI 87
G + + T PE+AR E AGA AV+A +E + ++ A + L+ Q+
Sbjct: 144 AGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQV 203
Query: 88 KSSVTIPVMA 97
+ +V IPV+A
Sbjct: 204 REAVDIPVVA 213
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 36.4 bits (85), Expect = 0.009
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 65 VPADIRAQGGVARMSDPQLIKQI----KSSVTIPVMAKARIG----HFVE-AQILEAIGV 115
V ++ G A + D + + I + SV+ K R+G E +IL GV
Sbjct: 95 VRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGV 154
Query: 116 DYV 118
D V
Sbjct: 155 DEV 157
Score = 32.9 bits (76), Expect = 0.095
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADA-AMMMQLGCDGVFVGSGVFKSGDP 261
A + + ++ R+P F +G + TP DA + + GCDG+ V G G P
Sbjct: 172 AEWKALSVLEK--RIPT--FVSGDIFTPEDAKRALEESGCDGLLVARGAI--GRP 220
Score = 29.8 bits (68), Expect = 0.98
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 11/55 (20%)
Query: 45 PEQARIAEEAGACAVMALERVPADIRAQG--GVARMSDPQLIKQIKSSVTIPVMA 97
E RI E G V + Q G A + + + ++ IP
Sbjct: 143 EEIYRILVEEGVDEVF----IHTRTVVQSFTGRA---EWKALSVLEKR--IPTFV 188
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for
structural genomics of infec diseases, csgid, lyase;
2.37A {Campylobacter jejuni}
Length = 252
Score = 35.6 bits (83), Expect = 0.011
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
D V + + LP+ G G+ D M ++ DGV VG+ +IV
Sbjct: 189 DKVKEIRSFTNLPI---FVGFGIQNNQDVKRMRKV-ADGVIVGT-------------SIV 231
Query: 270 QAVTNYSDPDVLAEVS 285
+ + ++ ++
Sbjct: 232 KCFKQGNLDIIMKDIE 247
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 35.6 bits (83), Expect = 0.012
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
+ Q Q +P++ GGVA D M G V VG+ F +
Sbjct: 233 IHQVAQDVDIPII--GMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPK 282
Score = 27.2 bits (61), Expect = 7.7
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 72 QGGVARMSDPQLIKQI----KSSVTIPVMAK--ARIGHFVE-AQILEAIGVDYV 118
GG A +DP++ + K+ +P+ K + V A+ +EA G D +
Sbjct: 140 HGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGL 193
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ
furiosus, X-RAY analysis, stability, calorimetry, lyase;
2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A*
2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Length = 248
Score = 35.6 bits (83), Expect = 0.012
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
DL+ + K++ R V A G GV+ +++ G +GV VGS A+V
Sbjct: 181 DLLRRAKRICRNKV---AVGFGVSKREHVVSLLKEGANGVVVGS-------------ALV 224
Query: 270 QAVTNYSD 277
+ +
Sbjct: 225 KIIGEKGR 232
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.014
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
Query: 80 DPQLIKQIKSSVTI------PVMA-KARI 101
+ Q +K++++S+ + P +A KA +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T
structural genomics consortium, TBSGC, lyase; 1.29A
{Mycobacterium tuberculosis}
Length = 272
Score = 35.2 bits (82), Expect = 0.019
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDP 278
GV AD G D V VG G+ SGDP +V A T+ S P
Sbjct: 221 GVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCP 268
Score = 27.1 bits (61), Expect = 7.9
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 37 GVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
G + + P + A+ ++ GA V + R QG + +++SV+IPV
Sbjct: 66 GALATIADPAKLAQAYQDGGARIVSVVTEQR---RFQG------SLDDLDAVRASVSIPV 116
Query: 96 MAKARIGHFV--EAQILEA--IGVDYV 118
+ K FV QI EA G D +
Sbjct: 117 LRK----DFVVQPYQIHEARAHGADML 139
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 35.2 bits (81), Expect = 0.024
Identities = 30/224 (13%), Positives = 69/224 (30%), Gaps = 32/224 (14%)
Query: 48 ARIAEEAGACAVMALERVPA-DIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE 106
A++A+ G V + + S P L+ + P A + ++
Sbjct: 109 AQVADTCGLLFVTGSYSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQ 168
Query: 107 AQILEAIGVDYVDESEV-------LTPADEENHINKHNFRVPFVCGCRNLGESLRRIRE- 158
L + ++ + E + + + ++PF+ G ++ I+
Sbjct: 169 PLFL-QVHINLMQELLMPEGEREFRSWKKHLSDY-AKKLQLPFILKEVGFGMDVKTIQTA 226
Query: 159 ---GAAMIRTKGEAGT-GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVM 214
G + G GT +E R + + + L+
Sbjct: 227 IDLGVKTVDISGRGGTSFAYIEN-------------RRGGNRSYLNQWG--QTTAQVLLN 271
Query: 215 QTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258
+ ++ + A+GG+ P D + LG V + + +
Sbjct: 272 AQPLMDKVEI--LASGGIRHPLDIIKALVLGAKAVGLSRTMLEL 313
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
unusual catalysis, disease mutati glycosyltransferase,
lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo
sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A*
3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A*
3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A*
3l0n_A* ...
Length = 260
Score = 34.6 bits (79), Expect = 0.025
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 223 PVVHFAAGG------VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA 271
P V AGG +P + + + G D + VG G+ + D + A +A
Sbjct: 197 PGVQLEAGGDNLGQQYNSPQEV--IGKRGSDIIIVGRGIISAADRLEAAEMYRKA 249
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 34.6 bits (79), Expect = 0.027
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 223 PVVHFAAGG------VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA 271
P V AGG +P + + + G D + VG G+ + D + A +A
Sbjct: 249 PGVQLEAGGDNLGQQYNSPQEV--IGKRGSDIIIVGRGIISAADRLEAAEMYRKA 301
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 34.2 bits (78), Expect = 0.035
Identities = 14/136 (10%), Positives = 38/136 (27%), Gaps = 21/136 (15%)
Query: 159 GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV-LRNMDDDEVFTFAKNIAAPYDLVMQTK 217
GA I A I + + G+I++ + + ++ + +++
Sbjct: 83 GADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSR 142
Query: 218 QLGRLPVVHFA------------------AGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
+ GG+ P D + + G + +
Sbjct: 143 DAELAGIGWTTDDLDKMRQLSALGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAGAE 201
Query: 260 DPVRRARAIVQAVTNY 275
+ A A+ + + +
Sbjct: 202 GQ-QTAAALREQIDRF 216
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics,
lyase, NPPSFA, national project on PROT structural and
functional analyses; 2.00A {Aquifex aeolicus}
Length = 262
Score = 34.0 bits (79), Expect = 0.036
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 18/76 (23%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
V + ++L PV G GV+ A + DGV VGS A+V
Sbjct: 196 KKVEEYRELCDKPV---VVGFGVSKKEHAREIGSF-ADGVVVGS-------------ALV 238
Query: 270 QAVTNYSDPDVLAEVS 285
+ D+ V
Sbjct: 239 KLAGQKKIEDLGNLVK 254
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 33.6 bits (77), Expect = 0.048
Identities = 26/139 (18%), Positives = 40/139 (28%), Gaps = 21/139 (15%)
Query: 156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV--LRNMDDDEVFTFAKNIAAPYDLV 213
GA + G I +R + + V + D + A L
Sbjct: 74 FDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADM-LA 132
Query: 214 MQTKQLGRLPVVHFA-----------------AGGVATPADAAMMMQLGCDGVFVGSGVF 256
+ T + AGG+ + LG D V VGS +
Sbjct: 133 VHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAIT 191
Query: 257 KSGDPVRRARAIVQAVTNY 275
+ DP AR I Q + +
Sbjct: 192 HAADPAGEARKISQVLLQH 210
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics,
ssgcid, seattle structural GE center for infectious
disease, lyase; 2.15A {Brucella melitensis}
Length = 272
Score = 32.9 bits (76), Expect = 0.085
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA 271
G+ T D + + G +G + + D RA++
Sbjct: 228 GIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLTG 268
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P
initiative, RSGI, structural genomics, lyase; HET: CIT;
1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Length = 271
Score = 32.9 bits (76), Expect = 0.10
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 20/83 (24%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
DLV + K LPV A G GV+ A AA DGV VGS A+V
Sbjct: 192 DLVRRIKARTALPV---AVGFGVSGKATAAQAA--VADGVVVGS-------------ALV 233
Query: 270 QAVTNYSDP-DVLAEVSCGLGEA 291
+A+ +L E+ GL
Sbjct: 234 RALEEGRSLAPLLQEIRQGLQRL 256
>3uy7_A KEMP eliminase KE59 R1 7/10H; structural genomics, israel
structural proteomics center, is barrel, lyase; 1.45A
{Escherichia coli} PDB: 3uxd_A* 3uxa_A* 3nyz_A 3nz1_A*
3uy8_A 3uyc_A 3uzj_A 3uz5_A 1igs_A 1juk_A 1jul_A* 3tc7_A
3tc6_A 1a53_A* 1lbf_A* 1lbl_A* 3nl8_A* 3nxf_A* 3o6y_X
3ud6_A* ...
Length = 252
Score = 32.5 bits (75), Expect = 0.11
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
G++ + + +LG + +GS + ++ + ++
Sbjct: 212 GISERNEIEELRKLGVNAFEIGSSLMRNPEKIKE 245
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 32.3 bits (74), Expect = 0.12
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP 261
++ V+ A GG+ + + G G V ++ D
Sbjct: 140 AKIIDSKVM--ALGGI-NEDNLLEIKDFGFGGAVVLGDLWNKFDA 181
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural
genomics, PSI-2, protein structure initiative; 1.38A
{Streptomyces coelicolor A3}
Length = 221
Score = 32.6 bits (74), Expect = 0.12
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
A G A + + DG +F V+ V
Sbjct: 165 LLAQVGDGDGVAAGRHLVMLRDGAMAAGCLFDPELVSETFLHGVEGV 211
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 31.6 bits (71), Expect = 0.26
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD 277
GG+ A + D + VG+ V++ D RA V AV
Sbjct: 188 GGGIKDAETAKQYAE-HADVIVVGNAVYEDFD---RALKTVAAVKGEEG 232
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 31.7 bits (72), Expect = 0.31
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
L E + ++R+ N+ E V D+ V+ A++
Sbjct: 141 TELLSERIAQVRDSGE--IVAVRVSPQNVREIAPIVIKAGADLLVI-----QGTLISAEH 193
Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
+ + + + +G L V AGGV A MM+ G G+ VG G
Sbjct: 194 VNTGGEALNLKEFIGSLDVP-VIAGGVNDYTTALHMMRTGAVGIIVGGG 241
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel,
glycolytic, archaeal, catalytic mechanism, reaction
intermediate, lyase; HET: FBP; 1.85A {Thermoproteus
tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A
1ok6_A
Length = 263
Score = 31.4 bits (70), Expect = 0.36
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 220 GRLPVVHFAAGGVATPADAAMM----MQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
G++PV+ T D ++ G G+ VG V++ D ++ ARA+ + V
Sbjct: 195 GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELV 251
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 31.4 bits (71), Expect = 0.36
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 20/73 (27%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPD 279
+ ++ GGV T DA + G V +G+ + P
Sbjct: 274 PSIQII--GTGGVXTGRDAFEHILCGASMVQIGTALH------------------QEGPQ 313
Query: 280 VLAEVSCGLGEAM 292
+ ++ L M
Sbjct: 314 IFKRITKELXAIM 326
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional
regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB:
1q09_A 1q0a_A
Length = 99
Score = 29.6 bits (66), Expect = 0.39
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVE-AVRHVRSVMGDIRVLRNMDD 196
R+ F+ R LG SL IRE ++ ++ V I L++M
Sbjct: 5 RLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQR 63
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 30.9 bits (70), Expect = 0.46
Identities = 37/226 (16%), Positives = 61/226 (26%), Gaps = 33/226 (14%)
Query: 48 ARIAEEAGACAV---MALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF 104
AR A +AG R + R +P +
Sbjct: 79 ARAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEM 138
Query: 105 VEAQILEAIGVDYVDESEVLTPADEENHIN--------KHNFRVPFV---CGCRNLGESL 153
+ A A+ + E++ P + + VP + G S
Sbjct: 139 IGA---NALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASA 195
Query: 154 RRIRE-GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDL 212
++ E GAA + G GT I LR F + I+ L
Sbjct: 196 GKLYEAGAAAVDIGGYGGT------------NFSKIENLRRQRQISFFN-SWGISTAASL 242
Query: 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258
+ + A+GG+ D A + LG + K+
Sbjct: 243 AEIRSEFPASTM--IASGGLQDALDVAKAIALGASCTGMAGHFLKA 286
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle,
signaling protein; 2.60A {Escherichia coli} SCOP:
h.4.5.1
Length = 227
Score = 30.7 bits (70), Expect = 0.46
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 150 GESLRRIREGAAMIRTKGEAGT--GNIVEAVRHVRSVMGDI 188
+S+ ++ G+ ++ AG IV AV V +MG+I
Sbjct: 129 EDSVGKVDVGSTLV---ESAGETMAEIVSAVTRVTDIMGEI 166
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP
domain, TSR receptor, fusion; 2.65A {Archaeoglobus
fulgidus}
Length = 341
Score = 30.8 bits (70), Expect = 0.48
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 150 GESLRRIREGAAMIRTKGEAGT--GNIVEAVRHVRSVMGDI 188
+S+ ++ G+ ++ AG IV AV V +MG+I
Sbjct: 209 EDSVGKVDVGSTLV---ESAGETMAEIVSAVTRVTDIMGEI 246
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.1 bits (68), Expect = 0.55
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 18/106 (16%)
Query: 29 GLAQMLRGGVIMDVVT----PEQARIAEEAGACAVMA-------LERVPADIRAQGGVAR 77
G LR + E A+ G + ER+ + +
Sbjct: 53 GAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLA 112
Query: 78 MSDPQ----LIKQIKSS-VTIPVMAKARIGHFVEAQILEAIGVDYV 118
M Q ++Q++ + A A + + + L GVD
Sbjct: 113 MPHHQGNQTALEQLQRRNYKGQIAAIAE--YPDQLEGLLESGVDAA 156
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 30.7 bits (70), Expect = 0.55
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 24/70 (34%)
Query: 48 ARIAEEAG--------ACAVMALERVPADIRAQG---GVARMSDPQL----IKQIKSSVT 92
ARI E G C P++ +AQ G + D +K + +V
Sbjct: 76 ARIGEAFGYDEINLNLGC--------PSE-KAQEGGYGACLLLDLARVREILKAMGEAVR 126
Query: 93 IPVMAKARIG 102
+PV K R+G
Sbjct: 127 VPVTVKMRLG 136
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase;
beta-alpha-barrel, TIM-barrel, ketopantoate,
selenomethionin decamer; HET: KPL; 1.80A {Escherichia
coli} SCOP: c.1.12.8
Length = 264
Score = 30.6 bits (70), Expect = 0.62
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 15/50 (30%)
Query: 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
A E AGA ++ LE VP + L K+I ++ IPV
Sbjct: 165 SDALALEAAGAQLLV-LECVPVE--------------LAKRITEALAIPV 199
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 30.2 bits (68), Expect = 0.72
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV----RRARAIVQAV 272
FA GGV TP + A + GC G +GS ++++G V ++A A V+A
Sbjct: 152 FAVGGV-TPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAY 200
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529,
structural genomics, NEW YORK S genomics research
consortium; 2.19A {Lactobacillus acidophilus}
Length = 259
Score = 29.9 bits (68), Expect = 0.82
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
VATP A + G + VG + + DP AI +
Sbjct: 199 VATPKMA---KEWGSSAIVVGRPITLASDPKAAYEAIKK 234
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics; HET: MSE; 1.75A {Neisseria meningitidis
serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Length = 275
Score = 30.2 bits (69), Expect = 0.84
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 15/50 (30%)
Query: 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
A+ ++AGA V+ +E V A+ L K++ +V+ P
Sbjct: 165 NDAKAHDDAGAAVVL-MECVLAE--------------LAKKVTETVSCPT 199
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 30.0 bits (68), Expect = 0.96
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
LV + + +PV+ AAGG+A A LG + V +G+
Sbjct: 167 LVNKVSRSVNIPVI--AAGGIADGRGMAAAFALGAEAVQMGT 206
Score = 28.8 bits (65), Expect = 2.5
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 38 VIMDVVTPEQARIAEEAGACAVMA--LERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
VI V + AR+ E AGA AV+A +E + G + ++ L+ ++ SV IPV
Sbjct: 127 VIPVVASDSLARMVERAGADAVIAEGME-------SGGHIGEVTTFVLVNKVSRSVNIPV 179
Query: 96 MAKARIG---HFVEAQILEAIGV 115
+A I A L A V
Sbjct: 180 IAAGGIADGRGMAAAFALGAEAV 202
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 29.6 bits (67), Expect = 0.97
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 233 ATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
DA ++ G D + VG ++ + +P A+AI
Sbjct: 169 GKAKDA---VKAGADYIIVGRAIYNAPNPREAAKAIYD 203
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 29.8 bits (68), Expect = 1.0
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 20/76 (26%)
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS 276
++ V GGV + DA + + G V VG+ +
Sbjct: 240 RRCPDKLVF--GCGGVYSGEDAFLHILAGASMVQVGTAL------------------QEE 279
Query: 277 DPDVLAEVSCGLGEAM 292
P + + L E M
Sbjct: 280 GPGIFTRLEDELLEIM 295
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics, seattle structural genomics center for
infectious disease; 1.80A {Burkholderia thailandensis}
PDB: 3ez4_A
Length = 275
Score = 29.8 bits (68), Expect = 1.0
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 15/50 (30%)
Query: 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
AR EEAGA ++ LE VP + ++ ++IP
Sbjct: 177 RDARAVEEAGAQLIV-LEAVPTL--------------VAAEVTRELSIPT 211
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 29.7 bits (67), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 80 DPQLIKQIKSSVTIPVMAK---ARIGHFVEA 107
D +LI+ +K +V IPV+A HF EA
Sbjct: 484 DLELIEHVKDAVKIPVIASSGAGVPEHFEEA 514
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural
genomics, PSI, protein structure initiative; 2.80A
{Mycobacterium tuberculosis} SCOP: c.1.12.8
Length = 281
Score = 29.5 bits (67), Expect = 1.3
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 15/50 (30%)
Query: 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
A EAGA AV+ +E VPA+ L QI +TIP
Sbjct: 183 ADAIAVAEAGAFAVV-MEMVPAE--------------LATQITGKLTIPT 217
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 29.6 bits (67), Expect = 1.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 231 GVATPADAAMMMQLGCDGVFV 251
GV D ++G GV +
Sbjct: 350 GVQRTEDVIKAAEIGVSGVVL 370
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A
{Escherichia coli} PDB: 3gnd_A* 3gkf_O
Length = 295
Score = 29.4 bits (65), Expect = 1.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 220 GRLPVVHFAAGGVATPADAAMM----MQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
+P+V A G +A M + G GV +G +F+S PV +A+ V
Sbjct: 222 CPVPIV-IAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVV 277
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A
{Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Length = 273
Score = 29.4 bits (65), Expect = 1.6
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 223 PVVHFAAGGVATPADAAMM----MQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDP 278
PVV T + M M+ G GV VG +F+ D V RA+ + V +D
Sbjct: 204 PVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHENADV 263
Query: 279 D 279
+
Sbjct: 264 E 264
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 29.1 bits (66), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
VATPA A + G + VG + K+ DPV+ +A+
Sbjct: 197 VATPAIA---REKGSSAIVVGRSITKAEDPVKAYKAVRL 232
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 29.1 bits (66), Expect = 1.8
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
+ ++ GG+ T DA + G + +G+ + K G
Sbjct: 241 PEIQII--GTGGIETGQDAFEHLLCGATMLQIGTALHKEG 278
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 29.2 bits (66), Expect = 1.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
LV Q +PV+ AAGG+A AA LG + V VG+
Sbjct: 153 LVRQVATAISIPVI--AAGGIADGEGAAAGFMLGAEAVQVGT 192
Score = 28.0 bits (63), Expect = 4.3
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 38 VIMDVVTPEQARIAEEAGACAVMA--LERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
VI V + A+ E+ GA AV+A +E A G + +++ L++Q+ ++++IPV
Sbjct: 113 VIPVVPSVALAKRMEKIGADAVIAEGME-------AGGHIGKLTTMTLVRQVATAISIPV 165
Query: 96 MA 97
+A
Sbjct: 166 IA 167
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
L+ R+P++ A+GG A + LG D + +G+
Sbjct: 163 LLPAAANRLRVPII--ASGGFADGRGLVAALALGADAINMGT 202
Score = 28.0 bits (63), Expect = 3.8
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 38 VIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA 97
VI A AE G AV A + + + L+ + + +P++A
Sbjct: 121 VIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLV---LLPAAANRLRVPIIA 177
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 28.7 bits (65), Expect = 2.2
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 20/76 (26%)
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS 276
++ + GGV T DA + + G V VG+ +
Sbjct: 273 RRCPGKLIF--GCGGVYTGEDAFLHVLAGASMVQVGTAL------------------QEE 312
Query: 277 DPDVLAEVSCGLGEAM 292
P + ++ L M
Sbjct: 313 GPSIFERLTSELLGVM 328
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 28.6 bits (65), Expect = 2.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 231 GVATPADAAMMMQLGCDGVFV 251
G+ T DA + M+ G+ V
Sbjct: 224 GILTKEDAELAMKHNVQGIVV 244
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 28.8 bits (65), Expect = 2.3
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
VA A A + D + VG ++K+ +P I+
Sbjct: 213 VANLAMA---RENLSDYIVVGRPIYKNENPRAVCEKILN 248
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan
biosynthesis, riken structural genomics/PR initiative,
RSGI, structural genomics; 1.80A {Thermus thermophilus}
SCOP: c.1.2.4
Length = 254
Score = 28.7 bits (65), Expect = 2.3
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
G + + + D V +G+ + ++ D R +V
Sbjct: 216 GYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV 253
Score = 28.7 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM 96
G+I +V E A GA AV L R G +K+++ +V +P++
Sbjct: 60 GLIREVDPVEAALAYARGGARAVSVLTEPH---RFGG------SLLDLKRVREAVDLPLL 110
Query: 97 AKARIGHFV--EAQILEA--IGVDYV 118
K FV + EA G
Sbjct: 111 RK----DFVVDPFMLEEARAFGASAA 132
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 28.6 bits (65), Expect = 2.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 230 GGVATPADAAMMMQLGCDGVFV-GSGVFKSGDPVRRARAIVQAV 272
GGV + G + VFV GS +FK+ D V + + + A+
Sbjct: 177 GGV-DNKTIRACYEAGAN-VFVAGSYLFKASDLVSQVQTLRTAL 218
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA, national project on structural and
functional analyses; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 28.7 bits (65), Expect = 2.3
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
V TP A LG D + +G + ++ DP+R +
Sbjct: 198 VVTPRKA---RALGSDYIVIGRSLTRAADPLRTYARLQH 233
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 231 GVATPADAAMMMQLGCDGVFV 251
GV T DA + +Q G G+ V
Sbjct: 232 GVITAEDARLAVQHGAAGIIV 252
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 28.7 bits (65), Expect = 2.4
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
+ TPA A + G D + +G + ++ P I
Sbjct: 217 IMTPAQA---IASGSDYLVIGRPITQAAHPEVVLEEINS 252
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 28.7 bits (64), Expect = 2.7
Identities = 41/230 (17%), Positives = 71/230 (30%), Gaps = 28/230 (12%)
Query: 48 ARIAEEAGACAVM-----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG 102
A +AE+ G + A+E+ A +I + +
Sbjct: 82 AEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQ 141
Query: 103 HFVEAQILEAIGVDYVDESEVLTPADEENHINK---------HNFRVPFVCGCRNLGESL 153
++ +AI V EV P E + VP + G S+
Sbjct: 142 DAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISM 201
Query: 154 RRIRE----GAAMIRTKGEAGTGNI-VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA 208
+ G T G+ GT I +E +R +R +N D +
Sbjct: 202 ETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDW-------GVPT 254
Query: 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258
++ + + +GG+ + DAA + LG D + V KS
Sbjct: 255 AASIMEVRYSVPDSFL--VGSGGIRSGLDAAKAIALGADIAGMALPVLKS 302
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 28.3 bits (64), Expect = 2.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
+ TP A + G D + +G V +S DP + +AI
Sbjct: 204 IMTPEQA---LSAGVDYMVIGRPVTQSVDPAQTLKAINA 239
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding,
transcription regulation; 2.10A {Streptomyces
avermitilis ma-4680}
Length = 190
Score = 28.2 bits (63), Expect = 2.7
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA 267
GG + P A + L DG +G+
Sbjct: 138 EAERGGASDPDLLARQLILVFDGASARAGIGADNLTGLIVPT 179
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 28.3 bits (64), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
V TP A +Q G D + +G + +S DP++ AI +
Sbjct: 199 VMTPRAA---IQAGSDYLVIGRPITQSTDPLKALEAIDK 234
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM
barrel, riken S genomics/proteomics initiative, RSGI,
structural genomics,; 2.00A {Aeropyrum pernix} SCOP:
c.1.10.1
Length = 234
Score = 28.3 bits (64), Expect = 2.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ + DA + + G D
Sbjct: 197 ASGGIRSGIDAVLAVGAGAD 216
>3oa3_A Aldolase; structural genomics, seattle structural genomics center
for infectious disease, ssgcid, pathogenic fungus; 1.60A
{Coccidioides immitis}
Length = 288
Score = 28.5 bits (64), Expect = 2.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ T D M++ G +
Sbjct: 239 ASGGIRTIEDCVKMVRAGAE 258
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 28.3 bits (64), Expect = 3.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
AAGG+ T DA M+ G
Sbjct: 205 AAGGIRTFDDAMKMINNGAS 224
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 28.4 bits (63), Expect = 3.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 219 LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258
L LP+ A+GGV T D A + LG D + V + +
Sbjct: 254 LPHLPL--VASGGVYTGTDGAKALALGADLLAVARPLLRP 291
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 28.3 bits (64), Expect = 3.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 231 GVATPADAAMMMQLGCDGVFV 251
G+ + DA + G DGV +
Sbjct: 232 GLLSAEDADRCIAEGADGVIL 252
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 28.3 bits (64), Expect = 3.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 231 GVATPADAAMMMQLGCDGVFV 251
G+ P DA M ++ G G++V
Sbjct: 236 GIQHPEDADMAIKRGASGIWV 256
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 27.9 bits (63), Expect = 3.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ A M++ G D
Sbjct: 180 ASGGIRDLETAISMIEAGAD 199
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 28.3 bits (64), Expect = 3.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 231 GVATPADAAMMMQLGCDGVFV 251
G+ DA ++ G +G+ V
Sbjct: 259 GILRGDDAREAVKHGLNGILV 279
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate,
carbinolamine, structural genomics, riken structural
genomics/proteomics initiative; HET: HPD; 1.40A {Thermus
thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Length = 220
Score = 27.9 bits (63), Expect = 3.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
AAGG+ A M++ G
Sbjct: 181 AAGGIRDRETALRMLKAGAS 200
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; HET: GOL; 1.25A {Mycobacterium
smegmatis} PDB: 3ng3_A
Length = 231
Score = 27.9 bits (63), Expect = 3.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ T AA M+ G
Sbjct: 195 ASGGIRTAEQAAAMLDAGAT 214
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 3.8
Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 39 IMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK 98
++ ++TPE + ++ V AD+ GG+ + + + AK
Sbjct: 706 LLGLLTPEVVELCQK---------SPVMADL--NGGLQFVPELK-----------EFTAK 743
Query: 99 ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKH------NFRVPF 142
R +++ +A+ ++ E +V+ + + N ++ F
Sbjct: 744 LRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDF 793
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 28.3 bits (64), Expect = 3.8
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
+ + K + V+ G V T +++ G DG+ VG G
Sbjct: 174 RTLKEIKSKMNIDVI---VGNVVTEEATKELIENGADGIKVGIG 214
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel,
lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB:
1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A
3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Length = 260
Score = 27.6 bits (62), Expect = 4.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
AGGV T DA + + +
Sbjct: 203 PAGGVRTAEDAQKYLAIADE 222
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 27.9 bits (61), Expect = 4.7
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258
V+ +++N P ++V ++ V F +G V + + G D V + +
Sbjct: 203 VYLYSRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP 262
Query: 259 GDPVRRARAIVQAV 272
D I
Sbjct: 263 -DWRSALAEIAGRR 275
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 27.4 bits (61), Expect = 5.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 222 LPVVHF-AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV---RRARAIVQAV 272
P V F GGV + + G V VGS + K G P +A+A V+ +
Sbjct: 148 FPNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKAFVEKI 200
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A*
3r13_A*
Length = 260
Score = 27.6 bits (62), Expect = 5.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ T DA M+ G D
Sbjct: 221 ASGGIRTFEDAVKMIMYGAD 240
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 27.6 bits (62), Expect = 5.3
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
+ + K + V+ G V T +++ G DG+ VG G
Sbjct: 135 RTLKEIKSKMNIDVI---VGNVVTEEATKELIENGADGIKVGIG 175
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 27.7 bits (62), Expect = 5.3
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 46 EQARIAEEAGACAV-----MALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR 100
E A+ E AGA + R+P V R + + +++K V++P++ R
Sbjct: 232 ELAQAIEAAGATIINTGIGWHEARIPT---IATPVPRGAFSWVTRKLKGHVSLPLVTTNR 288
Query: 101 IGHFVEA-QILEAIGVDYV 118
I A IL D V
Sbjct: 289 INDPQVADDILSRGDADMV 307
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 27.5 bits (62), Expect = 5.6
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 230 GGVATPADAAMMMQLGCDGVFV-GSGVFKSGDPVRRARAIVQAV 272
GG+ P + +++ G + V GS VF + + + +
Sbjct: 180 GGL-KPNNTWQVLEAGAN-AIVAGSAVFNAPNYAEAIAGVRNSK 221
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 27.1 bits (61), Expect = 5.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 230 GGVATPADAAMMMQLGCDGVFV-GSGVFKSGDPVRRARAIVQAV 272
GGV P +A +++ G + V GS VF + D + I +
Sbjct: 186 GGV-GPKNAYKVIEAGAN-ALVAGSAVFGAPDYAEAIKGIKTSK 227
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin
utilization, structural genomics, PSI, Pro structure
initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 27.5 bits (62), Expect = 6.2
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 187 DIR-----VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239
D R VLR+ ++ + I D+ + V VAT +
Sbjct: 288 DCRHTDAAVLRDFTQ-QLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELC 344
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted
DNA-binding transcriptional regulator TETR/ACRR family;
2.10A {Clostridium acetobutylicum atcc 824}
Length = 203
Score = 27.0 bits (60), Expect = 6.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 253 SGVFKSGDPVRRARAIVQAVTNYSDPDVL 281
GVFK P+ A I+ Y D D+
Sbjct: 142 EGVFKVKYPLETAEIILTLSHFYLDEDLF 170
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 27.7 bits (61), Expect = 6.3
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 78 MSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKH 136
+SD Q +Q +SV +PV A + +E +I +A+ + E++ + E +H + H
Sbjct: 427 VSDTQAYRQFGNSVVVPVFAA--VAKLLEPKIKQAVALRQ-QEAQHGRRSREGHHHHHH 482
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 27.5 bits (62), Expect = 6.3
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 225 VHFAAGGVATPADAAMMM--QLGCDGVFVGSGVFKSGDPVRRARAI-VQAVTNYSDPDVL 281
V A GV+ AA+ + G V +G S D +RRA+A+ NY+ PD
Sbjct: 172 VMAAGSGVSV---AAIQIAKLFGAR-VIATAG---SEDKLRRAKALGADETVNYTHPDWP 224
Query: 282 AEV 284
EV
Sbjct: 225 KEV 227
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 27.1 bits (60), Expect = 6.7
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 214 MQTKQLGRLPVVHF-AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV--------RR 264
+ G P + F GG+ + + + L GS + +S + RR
Sbjct: 149 LLKAWSGPFPDIQFCPTGGI-SKDNYKEYLGLPNVICAGGSWLTESKLLIEGDWNEVTRR 207
Query: 265 ARAIVQAV 272
A IV+
Sbjct: 208 ASEIVKLS 215
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 27.1 bits (60), Expect = 6.8
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 218 QLGRLPVVHF-AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV--------RRARAI 268
G V F GG+ +PA+ + L GS + + + AR
Sbjct: 150 IAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREA 208
Query: 269 VQAV 272
V+
Sbjct: 209 VEGA 212
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 27.1 bits (61), Expect = 8.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
+V KQ + P + G V T A A ++ G DG+ VG G
Sbjct: 285 AMVHYIKQ--KYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMG 326
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain,
M20 peptidase family, evolution, residue, dimerization
domain; 2.75A {Bacillus stearothermophilus}
Length = 408
Score = 27.1 bits (61), Expect = 8.0
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 187 DIR-----VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239
D+R V + + A+ IA ++ + T++L +P V + A
Sbjct: 284 DLRDLKAEVRDQVWK-AIAVRAETIAKERNVRVTTERLQEMPPVLCSDEVKRAAEAAC 340
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 27.0 bits (60), Expect = 8.2
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 23 PFSVKVGLAQMLRGGV--IMDVVT--PEQARIAEEAGACAVMALE 63
+ + G + R G + D+V + + E
Sbjct: 131 VAAAQAGADTLTRLGAGGVGDIVWAPEVMDALLAREDLSGTLYFE 175
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 26.7 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 230 GGVATPADAAMMMQLGCDGVFV-GSGVFKSGDP---VRRARAIVQAVTNYS 276
GG+ P+ + G + V GS +F + +P + R V+ N S
Sbjct: 180 GGL-GPSTIDVAASAGAN-CIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC,
DERA, structur genomics, structural genomics consortium,
SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Length = 281
Score = 27.0 bits (60), Expect = 9.3
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
+GG++ A+ + L
Sbjct: 230 VSGGISDLNTASHYILLARR 249
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 27.1 bits (61), Expect = 9.9
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 18/75 (24%)
Query: 55 GACAV---MALERVPADIRAQGGVARMSDPQLIKQIKSSVT---IPVMAKARI------- 101
GA V +A E + A+ +G M + + K ++ + +M+K I
Sbjct: 662 GATTVNAYLAQEAI-AERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYR 720
Query: 102 GHFVEAQILEAIGVD 116
G EAIG+
Sbjct: 721 G----GGNFEAIGLS 731
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.386
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,109,128
Number of extensions: 348778
Number of successful extensions: 1469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1447
Number of HSP's successfully gapped: 217
Length of query: 310
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 217
Effective length of database: 4,105,140
Effective search space: 890815380
Effective search space used: 890815380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)