RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037779
(310 letters)
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 398 bits (1024), Expect = e-142
Identities = 172/254 (67%), Positives = 213/254 (83%)
Query: 35 RGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP 94
+GGVIMDVV EQA+IAE AGA AVMALERVPADIRA GGVARM+DP +I+++ ++V+IP
Sbjct: 1 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIP 60
Query: 95 VMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLR 154
VMAK RIGH+VEA++LEA+GVDY+DESEVLTPADEE HI+K F VPFVCGCR+LGE+ R
Sbjct: 61 VMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAAR 120
Query: 155 RIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVM 214
RI EGA+M+RTKGE GTGNIVEAVRH+R V IR + NM +DE+ AK + AP +++
Sbjct: 121 RIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLR 180
Query: 215 QTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274
+ K+LGRLPVV+FAAGGV TPADAA+MM LG DGVFVGSG+FKS +P + ARAIV+A T+
Sbjct: 181 EIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTH 240
Query: 275 YSDPDVLAEVSCGL 288
Y D +++A +S GL
Sbjct: 241 YEDYELIAHLSKGL 254
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 112 bits (280), Expect = 2e-30
Identities = 40/247 (16%), Positives = 87/247 (35%), Gaps = 22/247 (8%)
Query: 27 KVGLAQMLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
K L + L+GG+I+ P + +E G +MA A A R + + IK
Sbjct: 4 KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAK----AAQEAGAVGIRANSVRDIK 59
Query: 86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
+I++ +P++ + + + + +EV A + +
Sbjct: 60 EIQAITDLPIIGIIKKDYPPQEPFI------TATMTEVDQLAALNIAVIAMDCTKRDRHD 113
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
++ +R+++E + T + D +++
Sbjct: 114 GLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGI---DFVGTTLSG---YTPYSRQ 167
Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA 265
A P +++ + V+ A G + +P +A + LG G+ VG + P A
Sbjct: 168 EAGPDVALIEALCKAGIAVI--AEGKIHSPEEAKKINDLGVAGIVVGGAI---TRPKEIA 222
Query: 266 RAIVQAV 272
++A+
Sbjct: 223 ERFIEAL 229
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 90.8 bits (224), Expect = 3e-22
Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 16/222 (7%)
Query: 53 EAGACAVMALERVPADIRAQGGVARMSDPQLI--KQIKSSVTIPVMAKARIGHFVEAQIL 110
EA + + + + + GV + PQL+ + I SV IPV A+ +
Sbjct: 17 EATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESVEIPVFAQHIDPIKPGSHTG 76
Query: 111 EAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG 170
+ + V T + + + +G L + + A
Sbjct: 77 HVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVG--LMTMVCSNNPAVSAAVAA 134
Query: 171 TGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG 230
AV + I V + + I +LV + ++
Sbjct: 135 LNPDYVAVEPPELIGTGIPVSKAK--------PEVITNTVELVKKVNPEVKV----LCGA 182
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
G++T D ++LG GV + SGV K+ DP + +V +
Sbjct: 183 GISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 224
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 88.4 bits (219), Expect = 3e-21
Identities = 29/243 (11%), Positives = 55/243 (22%), Gaps = 71/243 (29%)
Query: 30 LAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89
L ++ + A EA +A E + + V +++
Sbjct: 57 LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVET 116
Query: 90 SVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNL 149
+ K V I
Sbjct: 117 LKAAEQLVKDGFDVMVYTSDDPIIARQL-------------------------------- 144
Query: 150 GESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP 209
G + + + ++ +
Sbjct: 145 ------AEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEA-------------------- 178
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
V GV T +DAA+ M+LGC+ V + + + + DPV A A+
Sbjct: 179 -------------KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 225
Query: 270 QAV 272
A+
Sbjct: 226 HAI 228
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 73.4 bits (179), Expect = 6e-16
Identities = 44/259 (16%), Positives = 73/259 (28%), Gaps = 58/259 (22%)
Query: 33 MLRGGVIMDVVTPEQARIAE---EAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89
ML G+I+ QA E + + MAL A R + + I IK
Sbjct: 2 MLPHGLIVSC----QALPDEPLHSSFIMSKMAL----AAYEGGAVGIRANTKEDILAIKE 53
Query: 90 SVTIPVMAKARIGHFVEAQILEA----------IGVDYV------DESEVLTPADEENHI 133
+V +PV+ + + + A + + + T + ++I
Sbjct: 54 TVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYI 113
Query: 134 NKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN 193
H V + + E+ R G I T T + +
Sbjct: 114 RTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDF--------- 164
Query: 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ Q V+ A G V TP +M LG VG
Sbjct: 165 -----------------QFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGG 205
Query: 254 GVFKSGDPVRRARAIVQAV 272
+ P + VQ +
Sbjct: 206 AI---TRPKEITKRFVQVM 221
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 62.5 bits (152), Expect = 5e-12
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 219 LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273
+ + V G+ +P DAA M+LG DGV + + V + DPV+ ARA+ AV
Sbjct: 173 IEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVE 227
Score = 29.0 bits (65), Expect = 0.57
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF 104
AR EE G A+M G + +P + I +PV+ A IG
Sbjct: 136 VVLARKLEELGVHAIMPG------ASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSP 189
Query: 105 VEAQILEAIGVDYV 118
+A +G D V
Sbjct: 190 KDAAYAMELGADGV 203
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 48.4 bits (114), Expect = 2e-07
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273
G+ + D A ++LG GV + S K+ DP + + + ++
Sbjct: 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLS 223
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 45.6 bits (107), Expect = 2e-06
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250
L + E + + + +Q +P+V T +AA ++Q G DGV
Sbjct: 141 LGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGG---ITIDNAAPVIQAGADGVS 197
Query: 251 VGSGVFKSGDPVRRARAIVQAVTNY 275
+ S + ++ DP AR + + Y
Sbjct: 198 MISAISQAEDPESAARKFREEIQTY 222
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 42.5 bits (99), Expect = 2e-05
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
+ +++ + A G +A +++ G DG+ V S V + D + + + V
Sbjct: 142 LEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIV 201
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 40.6 bits (94), Expect = 8e-05
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249
V+ + D A + + +G V G D + +
Sbjct: 131 VVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTV----TGGLALEDLPLFKGIPIHVF 186
Query: 250 FVGSGVFKSGDPVRRARAIVQAVTNY 275
G + + PV AR +++
Sbjct: 187 IAGRSIRDAASPVEAARQFKRSIAEL 212
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 39.6 bits (91), Expect = 3e-04
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
+ L P++ A GG+ + + G + V S V
Sbjct: 251 RALPGFPIL--ATGGIDSAESGLQFLHSGASVLQVCSAVQNQD 291
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 36.9 bits (84), Expect = 0.002
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
P L + + + + GGVA D M G V VG+ F +
Sbjct: 227 PVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPK 282
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 36.7 bits (84), Expect = 0.002
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
L+ + K++ PV G++ P + Q G DGV +GS A+V+
Sbjct: 190 SLIQEVKKVTNKPVA--VGFGISKPEHVKQIAQWGADGVIIGS-------------AMVR 234
Query: 271 AVTNYSDPD 279
+ + P
Sbjct: 235 QLGEAASPK 243
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 35.5 bits (81), Expect = 0.006
Identities = 35/254 (13%), Positives = 79/254 (31%), Gaps = 57/254 (22%)
Query: 12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRA 71
I E +KSP G+ ++ E ++ E A +
Sbjct: 45 TAIIAEYKRKSP------------SGLDVERDPIEYSKFME-RYAVGLSI---------L 82
Query: 72 QGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEEN 131
+ +++I SSV+IP++ K I + +G D V + E
Sbjct: 83 TEEKYFNGSYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELE 142
Query: 132 HINK--HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR 189
+ + ++ + + + + +R GA
Sbjct: 143 SLLEYARSYGMEPLIEINDENDLDIALRIGA--------------------------RFI 176
Query: 190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249
+ + D + T N L+ + V A G++ + + +LG +
Sbjct: 177 GINSRD---LETLEINKENQRKLISMIPS-NVVKV---AESGISERNEIEELRKLGVNAF 229
Query: 250 FVGSGVFKSGDPVR 263
+GS + ++ + ++
Sbjct: 230 LIGSSLMRNPEKIK 243
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 34.5 bits (79), Expect = 0.017
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSG 254
GG+ T D + LG + +G+
Sbjct: 647 TDGGLKTGRDIVIAAMLGAEEFGIGTA 673
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 34.2 bits (78), Expect = 0.018
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 227 FAAGGVATPADAAMMMQLGCDGVFVGSG 254
A GG+ T D M +G + GS
Sbjct: 673 RADGGLKTGWDVVMAALMGAEEYGFGSI 700
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 33.5 bits (76), Expect = 0.023
Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 41/234 (17%)
Query: 37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM 96
G+I +V E A GA AV +K+++ +V +P++
Sbjct: 60 GLIREVDPVEAALAYARGGARAVSV---------LTEPHRFGGSLLDLKRVREAVDLPLL 110
Query: 97 AKARIGHFVEAQILEAIGVD-YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRR 155
K + + A G + +L + + E
Sbjct: 111 RKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIA 170
Query: 156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQ 215
+ GA ++ + + D A + +
Sbjct: 171 LEAGAEVL-------------GINNR--------------DLATLHINLETAPRLGRLAR 203
Query: 216 TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
+ G + V A G + + + D V +G+ + ++ D R +V
Sbjct: 204 KRGFGGVLV---AESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV 253
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 33.4 bits (75), Expect = 0.025
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
+ TP A + G D + +G V +S DP + +AI
Sbjct: 193 IMTPEQA---LSAGVDYMVIGRPVTQSVDPAQTLKAINA 228
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 33.4 bits (75), Expect = 0.029
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
++P++ A+GG+ + DA ++ G + S + +G
Sbjct: 341 KQIPII--ASGGIFSGLDALEKIEAGASVCQLYSCLVFNG 378
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 33.0 bits (74), Expect = 0.040
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 20/73 (27%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPD 279
GR+P++ GGV++ DA ++ G V + + + + P
Sbjct: 297 GRVPII--GVGGVSSGQDALEKIRAGASLVQLYTAL------------------TFWGPP 336
Query: 280 VLAEVSCGLGEAM 292
V+ +V L +
Sbjct: 337 VVGKVKRELEALL 349
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 32.5 bits (73), Expect = 0.049
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
VATPA A + G + VG + K+ DPV+ +A+
Sbjct: 197 VATPAIA---REKGSSAIVVGRSITKAEDPVKAYKAVRL 232
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 32.6 bits (73), Expect = 0.051
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
GRLP++ GG+ + A + G V + SG G
Sbjct: 288 GRLPII--GVGGIDSVIAAREKIAAGASLVQIYSGFIFKG 325
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 32.3 bits (73), Expect = 0.052
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
GGV + G + GS +FK+ D V + + + A+
Sbjct: 173 VDGGV-DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 216
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 32.0 bits (72), Expect = 0.070
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
+ G+ T A + +G +GS + D R ++
Sbjct: 213 SESGINTYAQVRELSH-FANGFLIGSALMAHDDLHAAVRRVL 253
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 31.7 bits (71), Expect = 0.083
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 203 AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257
+ YDL+ + K++ R V GV+ +++ G +GV VGS + K
Sbjct: 173 EEIPKTAYDLLRRAKRICRNKVA--VGFGVSKREHVVSLLKEGANGVVVGSALVK 225
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 31.8 bits (71), Expect = 0.091
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 201 TFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260
+ + L+ + K+ P G+++P + ++ G G GS
Sbjct: 185 AENRGALPLHHLIEKLKEYHAAPA--LQGFGISSPEQVSAAVRAGAAGAISGS------- 235
Query: 261 PVRRARAIVQAVTNY--SDPDVLAEVS 285
AIV+ + S +LAE+
Sbjct: 236 ------AIVKIIEKNLASPKQMLAELR 256
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 31.4 bits (70), Expect = 0.092
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 233 ATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
DA ++ G D + VG ++ + +P A+AI
Sbjct: 169 GKAKDA---VKAGADYIIVGRAIYNAPNPREAAKAIYD 203
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 31.3 bits (70), Expect = 0.12
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
G + G + + G+ +F + DP + +V Y
Sbjct: 177 GGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKY 221
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 31.4 bits (70), Expect = 0.13
Identities = 36/248 (14%), Positives = 64/248 (25%), Gaps = 26/248 (10%)
Query: 23 PFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ 82
+ M G + + A AE G M L + + +
Sbjct: 34 TLKAPFLIGAMTGGEENGERINLALAEAAEALGVG--MMLGSGRILLERPEALRSF---R 88
Query: 83 LIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPF 142
+ K ++ I + A++ + +L + E+L H+N V
Sbjct: 89 VRKVAPKALLIANLGLAQLRRYGRDDLLRLV--------EMLEADALAFHVNPLQEAVQR 140
Query: 143 VCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR-----HVRSVMGDIRVLRNMDDD 197
E G G EA + +V +
Sbjct: 141 GDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARV 200
Query: 198 EVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA--------GGVATPADAAMMMQLGCDGV 249
E + + P + + V GGV T D A + LG D +
Sbjct: 201 EEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLL 260
Query: 250 FVGSGVFK 257
V + +
Sbjct: 261 AVARPLLR 268
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 31.1 bits (69), Expect = 0.13
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
GG+ T DA + G + +G+ + K G
Sbjct: 245 IIGTGGIETGQDAFEHLLCGATMLQIGTALHKEG 278
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 30.4 bits (68), Expect = 0.19
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
GGV P +A +++ G + + GS VF + D + I +
Sbjct: 186 GGV-GPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSK 227
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 30.5 bits (68), Expect = 0.22
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
GG+ P + +++ G + + GS VF + + + +
Sbjct: 178 GGL-KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSK 219
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 30.2 bits (67), Expect = 0.23
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
GG+ P+ + G + + GS +F + +P A+ ++V
Sbjct: 173 VDGGL-GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSV 216
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 30.7 bits (68), Expect = 0.23
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 208 APYDLVMQTKQLGRLPVVHFAA-GGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
P L R P GGV + +A + + G V VG+ + G
Sbjct: 226 LPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEG 278
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 30.1 bits (67), Expect = 0.25
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258
+ + + V +TK + + F GG+ A + D + VG+ V++
Sbjct: 158 FYLEYSGVLGDIEAVKKTKAVLETSTL-FYGGGIKDAETAKQYAE-HADVIVVGNAVYED 215
Query: 259 GDPVRRARAIVQAV 272
D RA V AV
Sbjct: 216 FD---RALKTVAAV 226
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 29.7 bits (66), Expect = 0.37
Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 43/238 (18%)
Query: 36 GGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV 95
G I + E + A A+ L + G DP ++ ++ P+
Sbjct: 54 AGDINADASLEDFIRMYDELADAISIL----TEKHYFKG-----DPAFVRAARNLTCRPI 104
Query: 96 MAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRR 155
+AK V+ ++ ++G D + L A E ++
Sbjct: 105 LAKDFYIDTVQVKLASSVGADAI-----LIIARILTA------------------EQIKE 141
Query: 156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQ 215
I E A + + + + + I + D + TF ++L+
Sbjct: 142 IYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRD---LDTFEIKKNVLWELLPL 198
Query: 216 TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP---VRRARAIVQ 270
+ V A G+ P + + + V VG+ + K+ +P + RA +
Sbjct: 199 VPD-DTVVV---AESGIKDPRELKDLRG-KVNAVLVGTSIMKAENPRRFLEEMRAWSE 251
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 29.6 bits (66), Expect = 0.37
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSGV 255
A+GG+ + DA + + G D + S V
Sbjct: 197 ASGGIRSGIDAVLAVGAGADIIGTSSAV 224
>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
isomerase, PRAI {Escherichia coli [TaxId: 562]}
Length = 198
Score = 29.1 bits (64), Expect = 0.53
Identities = 25/187 (13%), Positives = 43/187 (22%), Gaps = 18/187 (9%)
Query: 106 EAQILEAIGVDYV-----DESE--VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIRE 158
+A+ G Y S V +E V +
Sbjct: 13 DAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVL 72
Query: 159 GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYD------- 211
A ++ G I + + + + L + F D
Sbjct: 73 SLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSG 132
Query: 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVRRARAI 268
L + + G + Q GC G+ S V D R ++
Sbjct: 133 QRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDA-RLLASV 191
Query: 269 VQAVTNY 275
Q + Y
Sbjct: 192 FQTLRAY 198
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 29.2 bits (64), Expect = 0.63
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 222 LPVVHFAAGGVA---TPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDP 278
V GG+A A+ A + GV F +AI + V Y DP
Sbjct: 390 CIPVVARTGGLADTVIDANHAALASKAATGV-----QFSPVTLDGLKQAIRRTVRYYHDP 444
Query: 279 DVLAEVS 285
+ ++
Sbjct: 445 KLWTQMQ 451
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 28.5 bits (63), Expect = 0.79
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ K L + + GG+ + A M++ D + VG+
Sbjct: 177 LVAEVKKVLDKARLF--YGGGIDSREKAREMLR-YADTIIVGN 216
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 28.6 bits (63), Expect = 0.80
Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 18/209 (8%)
Query: 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV 105
E + E G ++ L+ + + R + +L++++ + IP I F
Sbjct: 34 ELGKFYSEIGIDELVFLDITASVEK------RKTMLELVEKVAEQIDIPFTVGGGIHDFE 87
Query: 106 EAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRT 165
A L G D V + A EN F + +R+ +
Sbjct: 88 TASELILRGADKV----SINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTY 143
Query: 166 KGEAGTGNIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPV 224
G+ TG ++ G +L +D D + YD M +
Sbjct: 144 SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRD-------GTKSGYDTEMIRFVRPLTTL 196
Query: 225 VHFAAGGVATPADAAMMMQLGCDGVFVGS 253
A+GG G D S
Sbjct: 197 PIIASGGAGKMEHFLEAFLAGADAALAAS 225
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 28.6 bits (63), Expect = 1.0
Identities = 29/248 (11%), Positives = 58/248 (23%), Gaps = 36/248 (14%)
Query: 23 PFSVKVGLAQMLRGGVIMDVVTPEQ-ARIAEEAGACAV---MALERVPADIRAQGGVARM 78
S + + M GG + + AR A +AG R + R
Sbjct: 33 SSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSERLSYEIVRK 92
Query: 79 SDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNF 138
+P + + A L + + +
Sbjct: 93 ENPNGLIFANLGSEATAAQAKEAVEMIGANAL------------QIHLNVIQEIVMPEGD 140
Query: 139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVL-----RN 193
R + + +I ++ E G G + + + N
Sbjct: 141 RSF-----SGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTN 195
Query: 194 MDDDEVFTFAKNIAAPYD--------LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245
E + I+ L + ++ +GG+ D A + LG
Sbjct: 196 FSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIA--SGGLQDALDVAKAIALG 253
Query: 246 CDGVFVGS 253
+
Sbjct: 254 ASCTGMAG 261
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 28.2 bits (62), Expect = 1.0
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 203 AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----S 258
+ DLV + K LPV GV+ A AA DGV VGS + +
Sbjct: 184 ERLPEEVKDLVRRIKARTALPVA--VGFGVSGKATAAQAA--VADGVVVGSALVRALEEG 239
Query: 259 GDPVRRARAIVQAV 272
+ I Q +
Sbjct: 240 RSLAPLLQEIRQGL 253
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 28.4 bits (62), Expect = 1.1
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 2/96 (2%)
Query: 157 REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQT 216
E +R + + +P +++ Q+
Sbjct: 211 WEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQS 270
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
PV G +D + LG + V +G
Sbjct: 271 VAKTGKPV--LIDSGFRRGSDIVKALALGAEAVLLG 304
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 27.9 bits (61), Expect = 1.3
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 245 GCDGVFVGSGVFKSGDPVRRARAIVQAV 272
D + VG ++ + +P A I++++
Sbjct: 185 FADAIIVGRSIYLADNPAAAAAGIIESI 212
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 27.8 bits (61), Expect = 1.4
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 223 PVVHFAAGG-----VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
P + V T + + + +G ++ S +P + + I +
Sbjct: 150 PGIRMEVKADDQKDVVTLEEM----KGIANFAVLGREIYLSENPREKIKRIKE 198
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 261
Score = 28.0 bits (61), Expect = 1.5
Identities = 2/38 (5%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249
+ + +++G ++ + + G
Sbjct: 194 ISLLARKIG-AALL---YEDIEANFQLQYAWRNGGRYF 227
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 27.7 bits (61), Expect = 1.5
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 25/140 (17%)
Query: 151 ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPY 210
+ E A + R + +V + V+ N E+ +A IA
Sbjct: 117 FEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVV-------NETAPEIVAYAARIALEL 169
Query: 211 --------------DLVMQTKQLGRLPVVHFAAGGVATPADAAMM----MQLGCDGVFVG 252
K G++PV+ T D ++ G G+ VG
Sbjct: 170 GADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 229
Query: 253 SGVFKSGDPVRRARAIVQAV 272
V++ D ++ ARA+ + V
Sbjct: 230 RNVWQRRDALKFARALAELV 249
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 27.7 bits (61), Expect = 1.6
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG--DPVRRARAIVQAV 272
GGV + + G V VGS + K + +A+A V+ +
Sbjct: 153 VPTGGV-NLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKI 199
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
flexneri [TaxId: 623]}
Length = 247
Score = 27.6 bits (61), Expect = 1.9
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 34/112 (30%)
Query: 42 VVTPEQARIAEEAGA-----CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV- 95
+ E A A++ GA CA GG+ ++K ++ VTIPV
Sbjct: 7 CYSMECALTAQQNGADRVELCAAPKE----------GGLT--PSLGVLKSVRQRVTIPVH 54
Query: 96 -MAKARIGHFV-----------EAQILEAIGVDYVDESEVLTPADEENHINK 135
+ + R G F + + + +G + V D + +++
Sbjct: 55 PIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGL----VTGVLDVDGNVDM 102
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 27.2 bits (60), Expect = 2.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ A M++ G D
Sbjct: 180 ASGGIRDLETAISMIEAGAD 199
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 26.9 bits (59), Expect = 2.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
AAGG+ A M++ G
Sbjct: 180 AAGGIRDRETALRMLKAGAS 199
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 27.1 bits (59), Expect = 2.7
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA 265
T D + G D + VG G+F G +
Sbjct: 217 YRTVDDV---VSTGSDIIIVGRGLFAKGRDAKVE 247
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.9 bits (59), Expect = 3.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ T DA M+ G D
Sbjct: 213 ASGGIRTFEDAVKMIMYGAD 232
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 26.6 bits (58), Expect = 3.3
Identities = 38/208 (18%), Positives = 64/208 (30%), Gaps = 16/208 (7%)
Query: 46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV 105
E AR +EAGA ++ L DI A R ++ ++ V IP+ +
Sbjct: 34 EAARAYDEAGADELVFL-----DISA-THEERAILLDVVARVAERVFIPLTVGGGVRSLE 87
Query: 106 EAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRT 165
+A+ L G D V V + A + + ++ R +
Sbjct: 88 DARKLLLSGADKV---SVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAG 144
Query: 166 KGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVV 225
+ VE + +L +MD D L + +PV+
Sbjct: 145 GRVPTGLHAVEWAVKGVELGAGEILLTSMDRD-----GTKEGYDLRLTRMVAEAVGVPVI 199
Query: 226 HFAAGGVATPADAAMMMQLGCDGVFVGS 253
A+GG Q G + S
Sbjct: 200 --ASGGAGRMEHFLEAFQAGAEAALAAS 225
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 26.8 bits (58), Expect = 3.4
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
++ Q +L V F GGV D + LG GV +G
Sbjct: 295 MPILEQRNLKDKLEV--FVDGGVRRGTDVLKALCLGAKGVGLG 335
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 26.8 bits (58), Expect = 3.6
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 230 GGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
GG ++AA + Q DG VG K+ IV+A
Sbjct: 210 GGSVNASNAAELFAQPDIDGALVGGASLKADAFA----VIVKAA 249
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 378
Score = 26.6 bits (58), Expect = 3.9
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 32/210 (15%)
Query: 42 VVTPEQARIAEEAGACAVMA---LERV-PADIRAQGGVARMSDPQLIKQIKSSVTIPVMA 97
VVT QA+ +AG A+ + G + + + + +PV+A
Sbjct: 168 VVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIA 227
Query: 98 KARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIR 157
I + A+G V +L E + +
Sbjct: 228 DGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKH 287
Query: 158 -----------------EG-AAMIRTKG--EAGTGNIVEAVRHVRSVMG--DIRVLRNMD 195
+G + ++ KG ++ ++H +G + +R M
Sbjct: 288 LSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMM 347
Query: 196 DDEVFTFAKNIAA------PYDLVMQTKQL 219
F K ++ + L K+L
Sbjct: 348 YSGELKFEKRTSSAQVEGGVHSLHSYEKRL 377
>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase
{Plasmodium yoelii yoelii [TaxId: 73239]}
Length = 256
Score = 26.2 bits (57), Expect = 5.4
Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 26/98 (26%)
Query: 151 ESLRRIREGAAMIRT-KGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP 209
+L + A I+T G+ +V ++ + + ++++
Sbjct: 156 TTLAVLNGNADFIKTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKI---------- 205
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD 247
K +GG++ A+ + L
Sbjct: 206 -----GLK----------VSGGISDLNTASHYILLARR 228
>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 1122
Score = 26.3 bits (58), Expect = 6.8
Identities = 15/97 (15%), Positives = 20/97 (20%), Gaps = 14/97 (14%)
Query: 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQ---LGCD--GVFVG----SGVFKSGDPVR 263
V Q G A P + L C G G
Sbjct: 989 VFQAGNWA-----SLMGGKNACPLLIFDRTRKFVLACPRAGFVCAASSLGGGAHESSLCE 1043
Query: 264 RARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
+ R I+ V LG + + D
Sbjct: 1044 QLRGIISEGGAAVASSVFVATVKSLGPRTQQLQIEDW 1080
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 25.1 bits (55), Expect = 6.9
Identities = 8/43 (18%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 15 IYETTKKSPF--SVKVGLAQMLRGGVIMDVVTPEQARIAEEAG 55
+Y+T+ + S+ + +L+ ++ ++V + R+ E+ G
Sbjct: 84 LYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG 126
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 26.0 bits (56), Expect = 7.3
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
G++ V GGV T D + LG +F+G
Sbjct: 271 GKIEVYM--DGGVRTGTDVLKALALGARCIFLG 301
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 25.8 bits (56), Expect = 8.0
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+L+ + R+PV A+GG G D V S
Sbjct: 186 VELIRRVADSVRIPV--IASGGAGRVEHFYEAAAAGADAVLAAS 227
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 25.7 bits (55), Expect = 8.5
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 44 TPEQARIAEEAGA--CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI 101
T E A+ E AGA V R + + +++K V++P++ RI
Sbjct: 230 TVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRI 289
Query: 102 GHFVEA-QILEAIGVDYV 118
A IL D V
Sbjct: 290 NDPQVADDILSRGDADMV 307
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.386
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,167,191
Number of extensions: 56307
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 72
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)