BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037784
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/246 (61%), Positives = 188/246 (76%), Gaps = 3/246 (1%)
Query: 1 LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVS-KSLTYTPLLINQVNTEG- 58
A+AFS RKFA+CLS S SN VII G+ PY LPN+ VS K+LTYTPLL N V+T
Sbjct: 168 FASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227
Query: 59 GFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKAL 118
G PS EYFIGVKSIK+ + LNT+LLSI S G+GGTK ST PYTVLETSIYKA+
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAV 287
Query: 119 LQAFVNAMPTK-VTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGAN 177
+AF+ + +TRVA V PFGACF++ +I S+RLGPSVP IDLVLQ+ V+W+I G+N
Sbjct: 288 TEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSN 347
Query: 178 SIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCS 237
S+V ++++V CLG VDGG +TSIVIGGHQL++NLVQFD+A+SR+GFS +LL RT C+
Sbjct: 348 SMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCA 407
Query: 238 NFNFTS 243
NFNFTS
Sbjct: 408 NFNFTS 413
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/246 (61%), Positives = 188/246 (76%), Gaps = 3/246 (1%)
Query: 1 LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVS-KSLTYTPLLINQVNTEG- 58
A+AFS RKFA+CLS S SN VII G+ PY LPN+ VS K+LTYTPLL N V+T
Sbjct: 168 FASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227
Query: 59 GFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKAL 118
G PS EYFIGVKSIK+ + LNT+LLSI S G+GGTK ST PYTVLETSIYKA+
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAV 287
Query: 119 LQAFVNAMPTK-VTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGAN 177
+AF+ + +TRVA V PFGACF++ +I S+RLGPSVP IDLVLQ+ V+W+I G+N
Sbjct: 288 TEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSN 347
Query: 178 SIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCS 237
S+V ++++V CLG VDGG +TSIVIGGHQL++NLVQFD+A+SR+GFS +LL RT C+
Sbjct: 348 SMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCA 407
Query: 238 NFNFTS 243
NFNFTS
Sbjct: 408 NFNFTS 413
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 130/247 (52%), Gaps = 24/247 (9%)
Query: 1 LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVL--LPNVDVSKSLTYTPLLINQVNTEG 58
LA+ F L R+F CLS S G II GD P + N D+ L +TPL I
Sbjct: 172 LASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTI------- 224
Query: 59 GFLGTPSNEYFIGVKSIKVGGIAI-PLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKA 117
T EY + V SI++ ++ PLN +I GGT ST+ P+ VL+ S+Y+A
Sbjct: 225 ----TLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQA 280
Query: 118 LLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSK-VLWSIIGA 176
Q F +P K +V V PFG CFNS I + P +DLV+ +W I G
Sbjct: 281 FTQVFAQQLP-KQAQVKSVAPFGLCFNSNKINA------YPSVDLVMDKPNGPVWRISGE 333
Query: 177 NSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQR-TM 235
+ +V+ V+CLG ++GG+ P+ I +G QL+ NLV FD+A SR+GFS S L
Sbjct: 334 DLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVK 393
Query: 236 CSN-FNF 241
C++ FNF
Sbjct: 394 CADLFNF 400
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 130/256 (50%), Gaps = 35/256 (13%)
Query: 1 LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGF 60
+A+A + KF +CL GV I G GP LP ++S+ YTPL+ +GG
Sbjct: 156 VASAQKVPNKFLLCLP--TGGPGVAIFGGGP---LPWPQFTQSMDYTPLV-----AKGG- 204
Query: 61 LGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQ 120
S ++I +SIKV +P++ L+ GG ST +PY +L +Y+ L+
Sbjct: 205 ----SPAHYISARSIKVENTRVPISERALAT-----GGVMLSTRLPYVLLRRDVYRPLVD 255
Query: 121 AFVNAMPTK------VTR-VAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSI 173
AF A+ + V R V PV PF C++++ +G++ G VP + L L W++
Sbjct: 256 AFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSD-WAM 314
Query: 174 IGANSIVRVSNDVSCLGF-----VDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNS 228
G NS+V V +C+ F VD G ++++GG Q+++ ++ FD+ RLGF
Sbjct: 315 TGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGFLR- 373
Query: 229 LLLQRTMCSNFNFTST 244
L T CS+FNF +
Sbjct: 374 -LPHFTGCSSFNFARS 388
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 33/239 (13%)
Query: 1 LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGF 60
+A+A + +F +CL GV I G GP +P ++S+ YTPL+ T+GG
Sbjct: 154 VASAQKVANRFLLCLP--TGGPGVAIFGGGP---VPWPQFTQSMPYTPLV-----TKGG- 202
Query: 61 LGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQ 120
S ++I +SI VG +P+ L+ GG ST +PY +L +Y+ L+
Sbjct: 203 ----SPAHYISARSIVVGDTRVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYRPLMD 253
Query: 121 AFVNAMPTKVTRVAP-------VVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSI 173
AF A+ + AP V PFG C++++ +G++ G +VP + L L W++
Sbjct: 254 AFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTM 312
Query: 174 IGANSIVRVSNDVSCLGFVD-----GGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSN 227
G NS+V V +C+ FV+ G ++++GG Q+++ ++ FD+ RLGFS
Sbjct: 313 TGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 33/239 (13%)
Query: 1 LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGF 60
+A+A + +F +CL GV I G GP +P ++S+ YTPL+ T+GG
Sbjct: 154 VASAQKVANRFLLCLP--TGGPGVAIFGGGP---VPWPQFTQSMPYTPLV-----TKGG- 202
Query: 61 LGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQ 120
S ++I +SI VG +P+ L+ GG ST +PY +L +Y+ L+
Sbjct: 203 ----SPAHYISARSIVVGDTRVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYRPLMD 253
Query: 121 AFVNAMPTK-------VTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSI 173
AF A+ + V V PFG C++++ +G++ G +VP + L L W++
Sbjct: 254 AFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTM 312
Query: 174 IGANSIVRVSNDVSCLGFVD-----GGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSN 227
G NS+V V +C+ FV+ G ++++GG Q+++ ++ FD+ RLGFS
Sbjct: 313 TGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|1Z8P|A Chain A, Ferrous Dioxygen Complex Of The A245s Cytochrome P450eryf
Length = 404
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 21 SNGVIIIGDGPYVLLPNVDVSKSLTYTP-LLINQVNTEGGFLGTPSNEYFIGVKSIKVGG 79
+ V +IG G Y+LL + D + P L N V ++ P + +++GG
Sbjct: 244 ESSVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGG 303
Query: 80 IAIPLNTTLL 89
+AIP +T+L
Sbjct: 304 VAIPQYSTVL 313
>pdb|1JIP|A Chain A, P450eryf(A245s)KETOCONAZOLE
Length = 403
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 21 SNGVIIIGDGPYVLLPNVDVSKSLTYTP-LLINQVNTEGGFLGTPSNEYFIGVKSIKVGG 79
+ V +IG G Y+LL + D + P L N V ++ P + +++GG
Sbjct: 243 ESSVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGG 302
Query: 80 IAIPLNTTLL 89
+AIP +T+L
Sbjct: 303 VAIPQYSTVL 312
>pdb|1Z8Q|A Chain A, Ferrous Dioxygen Complex Of The A245t Cytochrome P450eryf
Length = 404
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 21 SNGVIIIGDGPYVLLPNVDVSKSLTYTP-LLINQVNTEGGFLGTPSNEYFIGVKSIKVGG 79
V +IG G Y+LL + D + P L N V ++ P + +++GG
Sbjct: 244 ETSVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGG 303
Query: 80 IAIPLNTTLL 89
+AIP +T+L
Sbjct: 304 VAIPQYSTVL 313
>pdb|1JIO|A Chain A, P450eryf/6deb
Length = 403
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 24 VIIIGDGPYVLLPNVDVSKSLTYTP-LLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAI 82
V +IG G Y+LL + D + P L N V ++ P + +++GG+AI
Sbjct: 246 VSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAI 305
Query: 83 PLNTTLL 89
P +T+L
Sbjct: 306 PQYSTVL 312
>pdb|1Z8O|A Chain A, Ferrous Dioxygen Complex Of The Wild-Type Cytochrome
P450eryf
Length = 404
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 24 VIIIGDGPYVLLPNVDVSKSLTYTP-LLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAI 82
V +IG G Y+LL + D + P L N V ++ P + +++GG+AI
Sbjct: 247 VSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAI 306
Query: 83 PLNTTLL 89
P +T+L
Sbjct: 307 PQYSTVL 313
>pdb|1EGY|A Chain A, Cytochrome P450eryf With 9-Aminophenanthrene Bound
pdb|1EUP|A Chain A, X-Ray Crystal Structure Of Cytochrome P450eryf With
Androstendione Bound
pdb|1JIN|A Chain A, P450eryfKETOCONAZOLE
pdb|1OXA|A Chain A, Cytochrome P450 (Donor:o2 Oxidoreductase)
Length = 403
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 24 VIIIGDGPYVLLPNVDVSKSLTYTP-LLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAI 82
V +IG G Y+LL + D + P L N V ++ P + +++GG+AI
Sbjct: 246 VSLIGIGTYLLLTHPDQLALVRADPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAI 305
Query: 83 PLNTTLL 89
P +T+L
Sbjct: 306 PQYSTVL 312
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 168 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 208
KV + N I R+ N +G + G V P +++GGH+
Sbjct: 298 KVRMHVYNINKITRIYN---VVGTIRGSVEPDRYVILGGHR 335
>pdb|3CB3|A Chain A, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
pdb|3CB3|B Chain B, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
pdb|3CB3|C Chain C, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
pdb|3CB3|D Chain D, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
Length = 393
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 55 NTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSI 114
NT GGFL TP ++ + + SI+ GIGG K P L+ +
Sbjct: 153 NTSGGFLHTPIDQLMVNASA---------------SIE-RGIGGIKLKVGQPDGALDIAR 196
Query: 115 YKALLQAFVNAMPTKV 130
A+ + +A+P V
Sbjct: 197 VTAVRKHLGDAVPLMV 212
>pdb|2YZS|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Aquifex Aeolicus
pdb|2YZS|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Aquifex Aeolicus
Length = 315
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 43 SLTYTPLL----INQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPL---NTTLLSIDSEG 95
SLTY +L Q+N +L PS + F S+ V + P+ N + I
Sbjct: 182 SLTYAKVLGEIYKTQLNPTVSYLHEPSTKRF--SLSLDVAEVFKPIFVDNLIIRLIQENK 239
Query: 96 IGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKV 130
I T FST + T L K L+AF + T +
Sbjct: 240 IDKTHFSTELNXTFLNEIGRKVFLKAFNELLETTI 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,783,252
Number of Sequences: 62578
Number of extensions: 269691
Number of successful extensions: 638
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 17
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)