Query 037785
Match_columns 365
No_of_seqs 308 out of 1263
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04897 ACT_ACR_3 ACT domain-c 99.3 7.7E-12 1.7E-16 98.7 9.5 71 257-339 4-74 (75)
2 cd00083 HLH Helix-loop-helix d 99.3 2E-12 4.3E-17 96.2 5.6 53 174-226 4-59 (60)
3 smart00353 HLH helix loop heli 99.3 4.3E-12 9.2E-17 92.5 6.2 49 179-227 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.3 2.4E-12 5.1E-17 95.0 4.8 48 176-223 3-55 (55)
5 cd04895 ACT_ACR_1 ACT domain-c 99.2 3.6E-11 7.7E-16 94.3 8.5 66 257-334 4-69 (72)
6 cd04896 ACT_ACR-like_3 ACT dom 99.2 6.8E-11 1.5E-15 93.3 9.0 70 257-339 3-74 (75)
7 KOG1318 Helix loop helix trans 99.0 7.4E-10 1.6E-14 111.6 9.3 66 166-231 225-294 (411)
8 cd04927 ACT_ACR-like_2 Second 99.0 3E-09 6.4E-14 83.8 9.8 68 257-337 3-71 (76)
9 cd04900 ACT_UUR-like_1 ACT dom 99.0 3.7E-09 8.1E-14 82.1 9.6 69 256-336 3-72 (73)
10 cd04925 ACT_ACR_2 ACT domain-c 98.9 1.9E-08 4.1E-13 78.6 9.7 70 257-338 3-73 (74)
11 PRK05007 PII uridylyl-transfer 98.7 5.8E-08 1.3E-12 107.5 10.1 84 241-339 797-880 (884)
12 PRK01759 glnD PII uridylyl-tra 98.6 3.4E-07 7.3E-12 101.2 12.6 82 241-337 772-853 (854)
13 cd04928 ACT_TyrKc Uncharacteri 98.5 4.6E-07 1E-11 70.3 8.6 51 256-306 3-54 (68)
14 KOG1319 bHLHZip transcription 98.5 9E-08 1.9E-12 86.9 4.7 58 174-231 62-126 (229)
15 cd04899 ACT_ACR-UUR-like_2 C-t 98.5 9.3E-07 2E-11 67.0 9.2 68 257-337 3-70 (70)
16 PRK00275 glnD PII uridylyl-tra 98.5 8.9E-07 1.9E-11 98.4 11.6 87 242-342 804-890 (895)
17 cd04926 ACT_ACR_4 C-terminal 98.4 1.9E-06 4.2E-11 66.8 9.0 51 256-306 3-53 (72)
18 KOG3561 Aryl-hydrocarbon recep 98.4 4.2E-07 9.1E-12 98.6 6.9 53 174-226 20-76 (803)
19 PRK04374 PII uridylyl-transfer 98.3 2.2E-06 4.7E-11 95.0 10.7 70 256-338 798-867 (869)
20 PRK05092 PII uridylyl-transfer 98.3 4.2E-06 9.1E-11 93.4 11.8 87 241-341 832-918 (931)
21 KOG4304 Transcriptional repres 98.3 6E-07 1.3E-11 86.0 4.1 54 174-227 32-93 (250)
22 COG2844 GlnD UTP:GlnB (protein 98.2 6.3E-06 1.4E-10 89.1 9.1 67 240-308 779-845 (867)
23 cd04873 ACT_UUR-ACR-like ACT d 98.1 2.7E-05 5.8E-10 58.4 9.3 67 257-336 3-69 (70)
24 TIGR01693 UTase_glnD [Protein- 98.1 1.1E-05 2.3E-10 89.3 9.9 82 241-337 768-849 (850)
25 PRK03381 PII uridylyl-transfer 98.1 9.6E-06 2.1E-10 89.0 9.4 53 256-308 709-761 (774)
26 PRK03059 PII uridylyl-transfer 98.1 1.2E-05 2.6E-10 89.1 10.0 68 256-338 788-855 (856)
27 PRK01759 glnD PII uridylyl-tra 98.0 2.9E-05 6.3E-10 86.1 11.0 73 256-341 679-752 (854)
28 TIGR01693 UTase_glnD [Protein- 98.0 4.2E-05 9.2E-10 84.7 11.1 73 256-340 670-743 (850)
29 PRK05007 PII uridylyl-transfer 97.9 4.6E-05 1E-09 84.8 10.9 82 244-340 693-775 (884)
30 KOG0561 bHLH transcription fac 97.8 2.6E-05 5.7E-10 75.7 4.5 54 176-229 62-117 (373)
31 KOG2483 Upstream transcription 97.7 7.4E-05 1.6E-09 70.9 6.2 57 174-230 59-118 (232)
32 PRK00275 glnD PII uridylyl-tra 97.6 0.00029 6.3E-09 78.6 9.9 75 255-340 705-780 (895)
33 PRK03381 PII uridylyl-transfer 97.5 0.00044 9.5E-09 76.1 10.7 69 255-339 600-668 (774)
34 PRK05092 PII uridylyl-transfer 97.5 0.00052 1.1E-08 76.9 10.9 72 256-339 734-806 (931)
35 PRK03059 PII uridylyl-transfer 97.5 0.00049 1.1E-08 76.5 10.0 73 255-340 679-752 (856)
36 KOG2588 Predicted DNA-binding 97.5 5E-05 1.1E-09 83.2 2.1 57 173-229 275-332 (953)
37 PF13740 ACT_6: ACT domain; PD 97.4 0.0016 3.4E-08 51.0 9.5 67 255-340 3-69 (76)
38 PF01842 ACT: ACT domain; Int 97.4 0.0012 2.6E-08 48.7 8.0 37 257-293 3-39 (66)
39 KOG3960 Myogenic helix-loop-he 97.3 0.00059 1.3E-08 65.0 6.6 58 175-232 119-178 (284)
40 PLN03217 transcription factor 97.2 0.00072 1.6E-08 54.4 5.6 46 187-232 20-71 (93)
41 KOG4029 Transcription factor H 97.2 0.0003 6.6E-09 66.4 4.1 56 175-230 110-169 (228)
42 PRK04374 PII uridylyl-transfer 97.2 0.0016 3.6E-08 72.5 10.1 71 255-340 691-762 (869)
43 cd04893 ACT_GcvR_1 ACT domains 97.1 0.0058 1.2E-07 47.9 9.5 64 257-339 4-67 (77)
44 PF13291 ACT_4: ACT domain; PD 97.0 0.0053 1.1E-07 47.9 8.3 54 251-304 3-58 (80)
45 COG2844 GlnD UTP:GlnB (protein 97.0 0.0048 1E-07 67.4 10.7 74 257-343 687-761 (867)
46 cd04870 ACT_PSP_1 CT domains f 96.8 0.0092 2E-07 46.3 8.5 65 257-339 2-66 (75)
47 cd04894 ACT_ACR-like_1 ACT dom 96.8 0.0059 1.3E-07 46.8 7.0 49 257-305 3-51 (69)
48 cd04869 ACT_GcvR_2 ACT domains 96.6 0.018 3.9E-07 44.7 9.0 65 257-339 2-72 (81)
49 cd04872 ACT_1ZPV ACT domain pr 96.6 0.0096 2.1E-07 47.6 7.4 67 257-340 4-70 (88)
50 PRK00194 hypothetical protein; 96.6 0.015 3.2E-07 46.5 8.2 67 257-340 6-72 (90)
51 cd04875 ACT_F4HF-DF N-terminal 96.4 0.03 6.4E-07 43.1 8.7 33 257-289 2-34 (74)
52 cd04887 ACT_MalLac-Enz ACT_Mal 96.0 0.055 1.2E-06 41.1 8.4 48 257-304 2-50 (74)
53 cd04886 ACT_ThrD-II-like C-ter 95.8 0.09 2E-06 38.7 8.7 45 258-302 2-51 (73)
54 cd04888 ACT_PheB-BS C-terminal 95.2 0.091 2E-06 39.9 7.1 47 256-302 2-49 (76)
55 KOG3910 Helix loop helix trans 95.2 0.021 4.6E-07 59.2 4.3 61 169-229 521-585 (632)
56 cd04877 ACT_TyrR N-terminal AC 94.4 0.19 4.2E-06 38.6 7.0 34 257-290 3-36 (74)
57 cd04876 ACT_RelA-SpoT ACT dom 94.0 0.47 1E-05 33.5 8.0 45 258-302 2-47 (71)
58 PRK06027 purU formyltetrahydro 93.8 0.5 1.1E-05 46.3 10.2 69 256-341 8-78 (286)
59 PRK08577 hypothetical protein; 93.8 0.75 1.6E-05 39.8 10.2 54 251-304 53-108 (136)
60 cd04880 ACT_AAAH-PDT-like ACT 93.6 0.74 1.6E-05 35.3 8.9 46 259-304 4-50 (75)
61 TIGR00655 PurU formyltetrahydr 93.4 0.6 1.3E-05 45.7 9.9 68 257-341 3-73 (280)
62 PRK13010 purU formyltetrahydro 93.1 0.5 1.1E-05 46.5 8.8 69 257-341 12-82 (289)
63 cd04881 ACT_HSDH-Hom ACT_HSDH_ 93.1 0.53 1.2E-05 35.1 7.2 44 257-300 3-48 (79)
64 cd04905 ACT_CM-PDT C-terminal 93.0 1.2 2.6E-05 34.7 9.4 48 258-305 5-53 (80)
65 PRK11589 gcvR glycine cleavage 92.8 0.26 5.7E-06 45.6 6.2 65 256-339 10-74 (190)
66 cd04874 ACT_Af1403 N-terminal 92.8 0.48 1E-05 34.8 6.6 36 256-291 2-37 (72)
67 PRK04435 hypothetical protein; 92.6 0.64 1.4E-05 41.1 8.0 51 254-304 69-120 (147)
68 cd02116 ACT ACT domains are co 92.4 0.59 1.3E-05 31.1 6.1 34 258-291 2-35 (60)
69 cd04889 ACT_PDH-BS-like C-term 92.1 0.52 1.1E-05 33.9 5.8 45 258-302 2-47 (56)
70 cd04931 ACT_PAH ACT domain of 91.7 1.7 3.6E-05 35.5 8.8 47 259-305 19-66 (90)
71 COG0788 PurU Formyltetrahydrof 91.5 0.64 1.4E-05 45.3 7.2 84 257-355 10-93 (287)
72 cd04878 ACT_AHAS N-terminal AC 91.5 0.74 1.6E-05 33.6 6.2 45 257-301 3-49 (72)
73 PRK07334 threonine dehydratase 91.1 1.3 2.8E-05 45.3 9.5 52 253-304 325-381 (403)
74 cd04879 ACT_3PGDH-like ACT_3PG 91.0 0.83 1.8E-05 33.2 6.1 44 257-300 2-47 (71)
75 PRK13011 formyltetrahydrofolat 91.0 1.4 3E-05 43.3 9.2 69 257-341 10-78 (286)
76 cd04909 ACT_PDH-BS C-terminal 90.5 2.4 5.2E-05 31.6 8.2 34 257-290 4-37 (69)
77 cd04903 ACT_LSD C-terminal ACT 90.3 1.1 2.4E-05 32.7 6.2 43 258-300 3-47 (71)
78 KOG3560 Aryl-hydrocarbon recep 89.9 0.29 6.3E-06 51.6 3.5 39 182-220 33-75 (712)
79 cd04908 ACT_Bt0572_1 N-termina 89.8 1.4 3.1E-05 32.9 6.5 44 257-302 4-47 (66)
80 PRK11589 gcvR glycine cleavage 89.6 4 8.6E-05 37.8 10.5 70 217-291 59-132 (190)
81 KOG4447 Transcription factor T 89.6 0.2 4.4E-06 44.7 1.8 53 174-226 78-132 (173)
82 cd04883 ACT_AcuB C-terminal AC 89.3 3.6 7.8E-05 30.7 8.4 47 256-302 3-51 (72)
83 PRK00227 glnD PII uridylyl-tra 89.0 0.62 1.3E-05 51.1 5.4 41 257-301 634-674 (693)
84 cd04904 ACT_AAAH ACT domain of 88.6 2 4.4E-05 33.2 6.7 46 259-304 5-51 (74)
85 cd04884 ACT_CBS C-terminal ACT 88.6 1.7 3.7E-05 33.0 6.2 33 258-290 3-35 (72)
86 PRK00227 glnD PII uridylyl-tra 88.4 5 0.00011 44.2 11.8 65 259-340 552-616 (693)
87 cd04882 ACT_Bt0572_2 C-termina 87.3 1.8 4E-05 31.4 5.5 43 258-300 3-47 (65)
88 COG3830 ACT domain-containing 86.9 1.2 2.7E-05 36.5 4.6 67 257-340 6-72 (90)
89 cd04901 ACT_3PGDH C-terminal A 86.7 0.81 1.8E-05 33.9 3.4 42 259-300 4-45 (69)
90 KOG3558 Hypoxia-inducible fact 86.2 0.56 1.2E-05 50.8 2.9 41 181-221 53-97 (768)
91 PRK10872 relA (p)ppGpp synthet 86.0 3.6 7.8E-05 45.6 9.1 52 253-304 665-718 (743)
92 KOG3559 Transcriptional regula 85.2 0.87 1.9E-05 46.7 3.6 43 181-223 8-54 (598)
93 KOG3898 Transcription factor N 84.8 0.56 1.2E-05 45.3 2.0 52 174-225 72-126 (254)
94 cd04898 ACT_ACR-like_4 ACT dom 84.7 2.2 4.7E-05 34.0 4.8 49 257-305 3-53 (77)
95 KOG4395 Transcription factor A 83.6 2.4 5.2E-05 41.0 5.6 54 174-227 174-230 (285)
96 cd04902 ACT_3PGDH-xct C-termin 83.2 3.4 7.5E-05 30.7 5.4 44 259-302 4-49 (73)
97 PRK11092 bifunctional (p)ppGpp 83.0 5.6 0.00012 43.9 9.0 53 252-304 624-677 (702)
98 COG4492 PheB ACT domain-contai 82.4 6.2 0.00013 34.8 7.2 52 253-304 71-123 (150)
99 cd04929 ACT_TPH ACT domain of 81.2 12 0.00025 29.3 7.8 46 259-304 5-51 (74)
100 TIGR00119 acolac_sm acetolacta 81.2 6.2 0.00013 35.5 7.1 63 257-338 4-68 (157)
101 PRK11899 prephenate dehydratas 80.7 11 0.00023 37.0 9.2 47 259-305 199-246 (279)
102 COG5178 PRP8 U5 snRNP spliceos 80.3 3.6 7.7E-05 47.4 6.2 40 204-247 104-144 (2365)
103 TIGR00691 spoT_relA (p)ppGpp s 80.2 7.9 0.00017 42.5 8.9 53 252-304 608-661 (683)
104 PRK13562 acetolactate synthase 79.7 7.2 0.00016 31.7 6.3 47 257-303 5-51 (84)
105 PRK11895 ilvH acetolactate syn 79.1 8.6 0.00019 34.7 7.4 45 257-301 5-51 (161)
106 CHL00100 ilvH acetohydroxyacid 78.6 10 0.00023 34.7 7.8 66 257-341 5-72 (174)
107 PF05088 Bac_GDH: Bacterial NA 77.0 32 0.00068 41.4 12.9 76 254-341 489-569 (1528)
108 PRK06737 acetolactate synthase 77.0 8.5 0.00019 30.5 5.9 36 257-292 5-40 (76)
109 cd04930 ACT_TH ACT domain of t 76.9 7.3 0.00016 33.1 5.9 46 259-304 46-92 (115)
110 cd04885 ACT_ThrD-I Tandem C-te 71.3 25 0.00054 26.3 7.2 31 259-290 3-33 (68)
111 PF13710 ACT_5: ACT domain; PD 71.1 10 0.00023 28.5 4.9 39 263-301 1-41 (63)
112 PRK11152 ilvM acetolactate syn 67.9 23 0.00049 28.1 6.4 44 257-300 6-51 (76)
113 COG0077 PheA Prephenate dehydr 67.5 24 0.00053 34.7 7.8 47 259-305 199-246 (279)
114 PRK10622 pheA bifunctional cho 65.6 37 0.00079 34.8 9.1 47 259-305 302-349 (386)
115 PRK06382 threonine dehydratase 63.8 39 0.00084 34.5 8.9 50 254-303 330-384 (406)
116 PRK11898 prephenate dehydratas 63.7 39 0.00084 33.1 8.5 47 259-305 201-249 (283)
117 cd04922 ACT_AKi-HSDH-ThrA_2 AC 60.6 29 0.00063 25.0 5.5 27 263-289 13-39 (66)
118 COG2716 GcvR Glycine cleavage 60.5 11 0.00024 34.5 3.8 48 257-304 8-55 (176)
119 cd04937 ACT_AKi-DapG-BS_2 ACT 59.9 31 0.00066 25.5 5.6 21 263-283 13-33 (64)
120 COG0317 SpoT Guanosine polypho 58.9 36 0.00078 37.7 8.0 46 251-296 624-669 (701)
121 KOG3582 Mlx interactors and re 58.8 5.5 0.00012 43.5 1.8 61 173-233 650-715 (856)
122 cd04892 ACT_AK-like_2 ACT doma 58.7 36 0.00077 23.8 5.6 26 263-288 12-37 (65)
123 KOG3648 Golgi apparatus protei 57.4 12 0.00027 40.7 4.1 18 62-79 86-103 (1179)
124 TIGR01127 ilvA_1Cterm threonin 57.1 72 0.0016 32.1 9.4 50 254-303 305-359 (380)
125 PRK08198 threonine dehydratase 55.9 79 0.0017 32.1 9.6 36 254-289 327-362 (404)
126 PRK08178 acetolactate synthase 54.4 48 0.001 27.6 6.3 44 257-300 11-54 (96)
127 PLN02317 arogenate dehydratase 53.3 75 0.0016 32.7 8.8 47 259-305 288-349 (382)
128 KOG4369 RTK signaling protein 53.2 14 0.00029 43.0 3.7 27 9-37 1856-1882(2131)
129 KOG3088 Secretory carrier memb 52.6 45 0.00097 33.1 6.7 20 83-102 3-25 (313)
130 COG2716 GcvR Glycine cleavage 50.6 56 0.0012 30.1 6.6 72 254-339 92-165 (176)
131 KOG4447 Transcription factor T 49.3 9.4 0.0002 34.4 1.4 23 181-203 29-51 (173)
132 TIGR01270 Trp_5_monoox tryptop 48.9 41 0.00089 35.4 6.2 46 259-304 36-83 (464)
133 PRK14646 hypothetical protein; 47.2 98 0.0021 27.7 7.6 59 269-340 11-69 (155)
134 PRK10820 DNA-binding transcrip 43.6 28 0.00062 36.8 4.2 36 256-291 2-37 (520)
135 cd04919 ACT_AK-Hom3_2 ACT doma 43.3 52 0.0011 23.8 4.5 27 263-289 13-39 (66)
136 PRK14637 hypothetical protein; 42.3 1.1E+02 0.0024 27.3 7.2 62 263-339 6-67 (151)
137 COG3283 TyrR Transcriptional r 41.9 42 0.0009 34.8 4.8 37 256-292 2-38 (511)
138 PRK14645 hypothetical protein; 41.8 1.2E+02 0.0026 27.2 7.3 60 268-340 12-71 (154)
139 cd04906 ACT_ThrD-I_1 First of 41.0 1.1E+02 0.0023 24.1 6.2 45 258-304 5-50 (85)
140 cd04932 ACT_AKiii-LysC-EC_1 AC 40.4 1.7E+02 0.0037 22.6 7.7 25 261-285 11-35 (75)
141 COG4747 ACT domain-containing 40.1 81 0.0018 27.5 5.6 41 256-296 5-45 (142)
142 PRK08526 threonine dehydratase 39.4 1.8E+02 0.004 29.8 9.2 40 254-293 326-365 (403)
143 COG1707 ACT domain-containing 39.4 91 0.002 28.8 6.1 49 257-305 5-53 (218)
144 KOG2391 Vacuolar sorting prote 38.7 2.7E+02 0.0059 28.3 9.9 10 221-230 257-266 (365)
145 cd04916 ACT_AKiii-YclM-BS_2 AC 37.2 1.1E+02 0.0025 21.8 5.5 26 263-288 13-38 (66)
146 PRK14634 hypothetical protein; 36.4 1.4E+02 0.0031 26.6 7.0 57 271-340 13-69 (155)
147 PF09383 NIL: NIL domain; Int 35.9 1.9E+02 0.0042 21.9 9.0 51 253-304 3-54 (76)
148 PF06752 E_Pc_C: Enhancer of P 35.6 32 0.0007 32.8 2.8 18 12-29 7-24 (230)
149 cd04924 ACT_AK-Arch_2 ACT doma 34.8 1.4E+02 0.0031 21.2 5.7 26 263-288 13-38 (66)
150 TIGR02263 benz_CoA_red_C benzo 34.4 2.2E+02 0.0048 28.9 8.8 90 190-295 178-273 (380)
151 cd04913 ACT_AKii-LysC-BS-like_ 33.5 1.6E+02 0.0035 21.1 5.9 25 261-285 9-33 (75)
152 cd04920 ACT_AKiii-DAPDC_2 ACT 32.4 96 0.0021 22.9 4.5 20 263-282 12-31 (63)
153 PRK14647 hypothetical protein; 32.3 1.8E+02 0.0039 26.0 6.9 55 271-340 14-68 (159)
154 PRK14639 hypothetical protein; 32.3 1.6E+02 0.0035 25.8 6.5 55 271-340 3-57 (140)
155 cd04868 ACT_AK-like ACT domain 31.6 1.6E+02 0.0034 19.8 5.3 25 263-287 12-36 (60)
156 cd04921 ACT_AKi-HSDH-ThrA-like 30.8 2.2E+02 0.0048 21.3 6.4 61 262-341 12-72 (80)
157 PRK00092 ribosome maturation p 30.3 1.9E+02 0.004 25.6 6.7 56 271-341 13-68 (154)
158 PRK06545 prephenate dehydrogen 29.9 2.9E+02 0.0064 27.6 8.8 48 257-304 293-340 (359)
159 PF05088 Bac_GDH: Bacterial NA 29.8 3E+02 0.0065 33.5 9.9 28 257-284 20-47 (1528)
160 PRK14636 hypothetical protein; 29.5 2.6E+02 0.0057 25.5 7.6 57 271-340 11-67 (176)
161 PF13840 ACT_7: ACT domain ; P 29.3 69 0.0015 24.0 3.2 31 256-286 8-42 (65)
162 PRK00907 hypothetical protein; 29.2 2.5E+02 0.0053 23.1 6.6 61 257-335 20-84 (92)
163 KOG1924 RhoA GTPase effector D 28.8 1.4E+02 0.003 33.8 6.4 19 10-28 481-499 (1102)
164 PF14689 SPOB_a: Sensor_kinase 28.5 2E+02 0.0044 21.4 5.7 44 181-231 15-58 (62)
165 COG3978 Acetolactate synthase 28.5 1.3E+02 0.0027 24.5 4.6 44 257-300 6-51 (86)
166 PRK14630 hypothetical protein; 28.1 2.6E+02 0.0057 24.6 7.1 57 269-340 12-68 (143)
167 cd04915 ACT_AK-Ectoine_2 ACT d 27.9 1.4E+02 0.003 22.3 4.7 26 264-289 14-39 (66)
168 cd04917 ACT_AKiii-LysC-EC_2 AC 27.6 2E+02 0.0044 20.8 5.5 19 263-281 13-31 (64)
169 cd04871 ACT_PSP_2 ACT domains 27.4 1.2E+02 0.0026 24.0 4.5 29 258-286 3-32 (84)
170 PRK14640 hypothetical protein; 26.7 2.3E+02 0.005 25.1 6.6 55 271-340 12-66 (152)
171 PRK14638 hypothetical protein; 25.7 2.9E+02 0.0063 24.5 7.0 56 271-340 14-69 (150)
172 TIGR01268 Phe4hydrox_tetr phen 25.7 2.6E+02 0.0056 29.4 7.6 46 259-304 21-67 (436)
173 COG4747 ACT domain-containing 24.4 1.5E+02 0.0033 25.9 4.7 42 257-299 72-115 (142)
174 COG2061 ACT-domain-containing 24.4 3.2E+02 0.007 24.9 6.9 50 254-303 5-57 (170)
175 cd07940 DRE_TIM_IPMS 2-isoprop 23.9 1.3E+02 0.0028 28.8 4.8 38 255-293 190-228 (268)
176 PRK14631 hypothetical protein; 23.8 3.4E+02 0.0075 24.7 7.3 70 271-340 14-86 (174)
177 PF02344 Myc-LZ: Myc leucine z 23.5 88 0.0019 20.9 2.4 18 181-198 12-29 (32)
178 cd04923 ACT_AK-LysC-DapG-like_ 23.4 1.6E+02 0.0035 20.5 4.2 24 263-286 12-35 (63)
179 PRK14632 hypothetical protein; 23.3 2.7E+02 0.0059 25.3 6.5 53 272-340 15-67 (172)
180 KOG3582 Mlx interactors and re 22.6 28 0.0006 38.4 -0.1 56 174-232 787-847 (856)
181 PRK08818 prephenate dehydrogen 22.0 2.2E+02 0.0048 29.1 6.2 46 259-305 300-346 (370)
182 cd04936 ACT_AKii-LysC-BS-like_ 21.5 1.9E+02 0.0041 20.1 4.3 25 262-286 11-35 (63)
183 PRK14633 hypothetical protein; 21.2 3.5E+02 0.0077 23.9 6.7 55 270-340 9-63 (150)
184 PRK06349 homoserine dehydrogen 20.8 2.3E+02 0.0051 29.2 6.3 45 257-301 351-395 (426)
185 COG0779 Uncharacterized protei 20.7 3E+02 0.0065 24.7 6.1 56 270-340 12-68 (153)
186 PRK14643 hypothetical protein; 20.2 4.3E+02 0.0093 23.9 7.1 57 271-340 15-73 (164)
No 1
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=7.7e-12 Score=98.72 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=64.5
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
|+|.|.||||||.+|.++|.++||.|.+|.|+|.|+++.++|||++.+|.+. .+....+.|+++|..+
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl------------~~~~~~~~l~~~L~~a 71 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL------------STEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc------------CCHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999999999999999876 1356678899999998
Q ss_pred HHh
Q 037785 337 MEK 339 (365)
Q Consensus 337 l~k 339 (365)
|.+
T Consensus 72 l~~ 74 (75)
T cd04897 72 IER 74 (75)
T ss_pred Hhc
Confidence 875
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=2e-12 Score=96.22 Aligned_cols=53 Identities=42% Similarity=0.639 Sum_probs=49.3
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC---CccchhhhHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST---TKTDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~L~~~v 226 (365)
.+..|+..||+||++||+.|..|+++||.. .|+||++||..||+||+.|+..+
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 345699999999999999999999999988 89999999999999999999875
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.31 E-value=4.3e-12 Score=92.53 Aligned_cols=49 Identities=41% Similarity=0.636 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CCccchhhhHHHHHHHHHHHHHHHH
Q 037785 179 SEAERRRRERINNHLAKLRSLLPS---TTKTDKASLLAEVIQHVKELKRQTS 227 (365)
Q Consensus 179 ~~~ER~RR~~in~~~~~LrslvP~---~~k~dK~siL~~ai~YIk~L~~~v~ 227 (365)
+..||+||++||+.|..|+++||. ..|++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6799999999999999999999875
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.30 E-value=2.4e-12 Score=95.03 Aligned_cols=48 Identities=50% Similarity=0.786 Sum_probs=45.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCC-----CccchhhhHHHHHHHHHHHH
Q 037785 176 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKELK 223 (365)
Q Consensus 176 ~~h~~~ER~RR~~in~~~~~LrslvP~~-----~k~dK~siL~~ai~YIk~L~ 223 (365)
..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4599999999999999999999999976 78999999999999999997
No 5
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.24 E-value=3.6e-11 Score=94.25 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=58.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
++|.+.||||||.+|.++|.++||+|..|.|+|.|+++.++|||++.+|.+. .++...+.|+++|.
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl------------~d~~~~~~l~~~L~ 69 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL------------TDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC------------CCHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999999999999988766 12456677777775
No 6
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.21 E-value=6.8e-11 Score=93.34 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=61.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE--eeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT--TLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is--T~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
++|.|.||||||.+|.++|..+||+|..|.|+ |.|+++.++||| +.+|.+. .+....+.|+++|+
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl------------~d~~~~~~L~~~L~ 69 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKI------------MDPKKQAALCARLR 69 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCcc------------CCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999 999999999999 6666554 13466788999999
Q ss_pred HHHHh
Q 037785 335 AVMEK 339 (365)
Q Consensus 335 ~vl~k 339 (365)
.+|+.
T Consensus 70 ~~l~~ 74 (75)
T cd04896 70 EEMVC 74 (75)
T ss_pred HHhcC
Confidence 88875
No 7
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.03 E-value=7.4e-10 Score=111.61 Aligned_cols=66 Identities=29% Similarity=0.472 Sum_probs=57.1
Q ss_pred HhhHHhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC----CccchhhhHHHHHHHHHHHHHHHHHHHh
Q 037785 166 IMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPST----TKTDKASLLAEVIQHVKELKRQTSLIAE 231 (365)
Q Consensus 166 ~~~~k~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~L~~~v~~L~~ 231 (365)
....|...++.+|++.|||||++||++|.+|..|||.+ .|..|.+||..+++||++|++..++..+
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E 294 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARE 294 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33456666788999999999999999999999999987 4678999999999999999998875543
No 8
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.00 E-value=3e-09 Score=83.78 Aligned_cols=68 Identities=28% Similarity=0.418 Sum_probs=54.8
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe-eCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT-LGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT-~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
++|.|.||+|||++|..+|..+||+|+.|.|.| .+|+++++|+|.+.++... .....+.|+++|..
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~-------------~~~~~~~l~~~L~~ 69 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLH-------------TKKRREETYDYLRA 69 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCC-------------CHHHHHHHHHHHHH
Confidence 679999999999999999999999999999985 9999999999987654411 12344556666665
Q ss_pred HH
Q 037785 336 VM 337 (365)
Q Consensus 336 vl 337 (365)
+|
T Consensus 70 ~L 71 (76)
T cd04927 70 VL 71 (76)
T ss_pred HH
Confidence 55
No 9
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.98 E-value=3.7e-09 Score=82.09 Aligned_cols=69 Identities=25% Similarity=0.353 Sum_probs=56.1
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee-CCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL-GGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~-ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+|.|+|.||+|||++|..+|..+||+|+.|.|.|. +|+++++|+|.+..+... ......+.|+++|.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~------------~~~~~~~~l~~~L~ 70 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI------------GERERLARIREALE 70 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC------------ChHHHHHHHHHHHH
Confidence 46799999999999999999999999999999877 799999999987665532 02345566777776
Q ss_pred HH
Q 037785 335 AV 336 (365)
Q Consensus 335 ~v 336 (365)
.+
T Consensus 71 ~~ 72 (73)
T cd04900 71 DA 72 (73)
T ss_pred hh
Confidence 55
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.87 E-value=1.9e-08 Score=78.61 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=59.1
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecC-CCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADD-QDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
++|.|.||+|||.+|..+|..+|+.|+.|.|.|.|++++++|+|.+.. +... ......+.|+++|..
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~------------~~~~~~~~i~~~L~~ 70 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPI------------DDPIRLASIEDRLDN 70 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCC------------CCHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999766 4422 123556788888887
Q ss_pred HHH
Q 037785 336 VME 338 (365)
Q Consensus 336 vl~ 338 (365)
+|.
T Consensus 71 ~l~ 73 (74)
T cd04925 71 VLR 73 (74)
T ss_pred Hhc
Confidence 764
No 11
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.69 E-value=5.8e-08 Score=107.54 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=69.0
Q ss_pred ccceeeccCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhh
Q 037785 241 ELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQ 320 (365)
Q Consensus 241 eV~V~~~~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~ 320 (365)
.|.+++..++..++ ++|.|.||||||++|+++|.++||+|.+|.|+|.|+++.|+|||++..|.+.
T Consensus 797 ~V~~d~~~s~~~Tv--lEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l------------ 862 (884)
T PRK05007 797 EVSFLPTHTDRRSY--MELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRAL------------ 862 (884)
T ss_pred EEEEccCCCCCeEE--EEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcC------------
Confidence 45555544444444 5699999999999999999999999999999999999999999999888765
Q ss_pred hhhhhHHHHHHHHHHHHHh
Q 037785 321 QQQYSISSIEEALKAVMEK 339 (365)
Q Consensus 321 ~~~~~v~~l~eAL~~vl~k 339 (365)
+....+.|+++|..+|..
T Consensus 863 -~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 863 -NEELQQELRQRLTEALNP 880 (884)
T ss_pred -CHHHHHHHHHHHHHHHhh
Confidence 134568888998888855
No 12
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.59 E-value=3.4e-07 Score=101.22 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=66.4
Q ss_pred ccceeeccCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhh
Q 037785 241 ELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQ 320 (365)
Q Consensus 241 eV~V~~~~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~ 320 (365)
+|.+++..++..++ ++|.+.||||||.+|.++|.++|++|..|.|+|.|+++.|+|||++.+|.+. .
T Consensus 772 ~V~~dn~~s~~~T~--iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l---~-------- 838 (854)
T PRK01759 772 EVRFLNEEKQEQTE--MELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQAL---D-------- 838 (854)
T ss_pred EEEEccCCCCCeEE--EEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcC---C--------
Confidence 55566655544445 5689999999999999999999999999999999999999999999888765 1
Q ss_pred hhhhhHHHHHHHHHHHH
Q 037785 321 QQQYSISSIEEALKAVM 337 (365)
Q Consensus 321 ~~~~~v~~l~eAL~~vl 337 (365)
+... +.|+++|..+|
T Consensus 839 -~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 839 -EEER-KALKSRLLSNL 853 (854)
T ss_pred -hHHH-HHHHHHHHHHh
Confidence 1223 77888887765
No 13
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.55 E-value=4.6e-07 Score=70.32 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=46.1
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE-eeCCeEEEEEEEEecCCC
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT-TLGGRAKNVLFITADDQD 306 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is-T~ggrv~~vf~V~~~~~~ 306 (365)
+|.|.|.+|+|+|++|..+|..+||+|+.|.|. +.+|.++++|+|...+++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~ 54 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG 54 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence 356899999999999999999999999999985 668999999999988765
No 14
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.52 E-value=9e-08 Score=86.93 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=50.7
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC-------CccchhhhHHHHHHHHHHHHHHHHHHHh
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST-------TKTDKASLLAEVIQHVKELKRQTSLIAE 231 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-------~k~dK~siL~~ai~YIk~L~~~v~~L~~ 231 (365)
++..|.-+||+||+.||..|..|+.|||-+ .|+.||.||.++|+||.+|+..+..-++
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~ 126 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE 126 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999999999999999954 3788999999999999999987765553
No 15
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.50 E-value=9.3e-07 Score=67.01 Aligned_cols=68 Identities=31% Similarity=0.455 Sum_probs=56.9
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
+.|.|.+++|+|.+|+++|.++++.|.++.+.+.+++++++|++....+... .....+.|+++|..+
T Consensus 3 l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-------------~~~~~~~i~~~l~~~ 69 (70)
T cd04899 3 LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-------------DPERQEALRAALGEA 69 (70)
T ss_pred EEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-------------CHHHHHHHHHHHHhh
Confidence 5689999999999999999999999999999999999999999998776532 124566788887765
Q ss_pred H
Q 037785 337 M 337 (365)
Q Consensus 337 l 337 (365)
|
T Consensus 70 ~ 70 (70)
T cd04899 70 L 70 (70)
T ss_pred C
Confidence 3
No 16
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.47 E-value=8.9e-07 Score=98.36 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=69.7
Q ss_pred cceeeccCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhh
Q 037785 242 LTVDASDEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQ 321 (365)
Q Consensus 242 V~V~~~~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~ 321 (365)
|.++.....+.++ |.|++.||||||++|..+|..+||+|+.|.|+|.|++++++|+|.+.+|... .
T Consensus 804 V~i~~~~~~~~T~--i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l---~--------- 869 (895)
T PRK00275 804 VTISNDAQRPVTV--LEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL---S--------- 869 (895)
T ss_pred EEEEECCCCCeEE--EEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCC---C---------
Confidence 4444444344333 5799999999999999999999999999999999999999999998887654 1
Q ss_pred hhhhHHHHHHHHHHHHHhccC
Q 037785 322 QQYSISSIEEALKAVMEKTSG 342 (365)
Q Consensus 322 ~~~~v~~l~eAL~~vl~k~~~ 342 (365)
+....+.|+++|..+|....+
T Consensus 870 ~~~~~~~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 870 DPQLCSRLQDAICEQLDARNE 890 (895)
T ss_pred CHHHHHHHHHHHHHHHhcccc
Confidence 235667899999999976653
No 17
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.41 E-value=1.9e-06 Score=66.84 Aligned_cols=51 Identities=33% Similarity=0.509 Sum_probs=46.4
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCC
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQD 306 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~ 306 (365)
++.|.+.+++|+|.+|..+|.++|++|++|.+.|.++.++++|+|.+.++.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~ 53 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGN 53 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCC
Confidence 456889999999999999999999999999999999999999999876544
No 18
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.41 E-value=4.2e-07 Score=98.56 Aligned_cols=53 Identities=30% Similarity=0.592 Sum_probs=49.0
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC----CccchhhhHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST----TKTDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~L~~~v 226 (365)
.+.+|+.+|||||+++|..|.+|.+|||.+ .|+||.+||..||.+||.+++.-
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~ 76 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQE 76 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhh
Confidence 477899999999999999999999999976 59999999999999999998863
No 19
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.34 E-value=2.2e-06 Score=95.01 Aligned_cols=70 Identities=30% Similarity=0.465 Sum_probs=59.8
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
.|.|.+.||||||++|..+|..+||+|+.|.|+|.|++++++|+|++.+|... . +... +.|+++|..
T Consensus 798 ~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~---~---------~~~~-~~l~~~L~~ 864 (869)
T PRK04374 798 RISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPL---S---------ESAR-QALRDALCA 864 (869)
T ss_pred EEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcC---C---------hHHH-HHHHHHHHH
Confidence 36799999999999999999999999999999999999999999998777643 0 1233 788888888
Q ss_pred HHH
Q 037785 336 VME 338 (365)
Q Consensus 336 vl~ 338 (365)
+|.
T Consensus 865 ~l~ 867 (869)
T PRK04374 865 CLD 867 (869)
T ss_pred Hhc
Confidence 874
No 20
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.29 E-value=4.2e-06 Score=93.44 Aligned_cols=87 Identities=26% Similarity=0.312 Sum_probs=69.5
Q ss_pred ccceeeccCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhh
Q 037785 241 ELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQ 320 (365)
Q Consensus 241 eV~V~~~~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~ 320 (365)
.|.+++..+.+.+ .|.|.|.||||||.+|..+|.++|++|..|.|.|.|+++.++|+|++.+|... .
T Consensus 832 ~V~~~~~~s~~~t--~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i---~-------- 898 (931)
T PRK05092 832 RVTIDNEASNRFT--VIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKI---T-------- 898 (931)
T ss_pred EEEEeeCCCCCeE--EEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcC---C--------
Confidence 3445544444433 36799999999999999999999999999999999999999999998887654 1
Q ss_pred hhhhhHHHHHHHHHHHHHhcc
Q 037785 321 QQQYSISSIEEALKAVMEKTS 341 (365)
Q Consensus 321 ~~~~~v~~l~eAL~~vl~k~~ 341 (365)
.....+.|+++|..+|....
T Consensus 899 -~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 899 -NEARQAAIRRALLAALAEGE 918 (931)
T ss_pred -CHHHHHHHHHHHHHHhcCcc
Confidence 23447889999999996544
No 21
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.28 E-value=6e-07 Score=86.04 Aligned_cols=54 Identities=31% Similarity=0.579 Sum_probs=47.6
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCC--------CCccchhhhHHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPS--------TTKTDKASLLAEVIQHVKELKRQTS 227 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~--------~~k~dK~siL~~ai~YIk~L~~~v~ 227 (365)
+..+|-+.|||||+|||+.|..|+.||+. .+|++||-||.-|++|++.|+....
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 44568899999999999999999999993 2788999999999999999998643
No 22
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6.3e-06 Score=89.14 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=56.4
Q ss_pred CccceeeccCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCC
Q 037785 240 DELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSS 308 (365)
Q Consensus 240 ~eV~V~~~~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~ 308 (365)
.+|++.........+ +++.+.||||||+.|..+|.+++|+|++|+|+|+|.++.++|+|++..+...
T Consensus 779 p~v~i~~t~~~~~t~--lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l 845 (867)
T COG2844 779 PRVTILPTASNDKTV--LEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL 845 (867)
T ss_pred CceeeccccCCCceE--EEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC
Confidence 345555544443344 4689999999999999999999999999999999999999999999998764
No 23
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.11 E-value=2.7e-05 Score=58.40 Aligned_cols=67 Identities=33% Similarity=0.487 Sum_probs=54.2
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
+.|.|.+++|+|.+|+.+|.++|+.|..+.+.+.+++...+|+|...++... .....+.|+++|+.+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~l~~~l~~~ 69 (70)
T cd04873 3 VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-------------DPERIARLEEALEDA 69 (70)
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcC-------------CHHHHHHHHHHHHhh
Confidence 5689999999999999999999999999999998889999999987665421 124455677777654
No 24
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.11 E-value=1.1e-05 Score=89.34 Aligned_cols=82 Identities=23% Similarity=0.267 Sum_probs=65.5
Q ss_pred ccceeeccCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhh
Q 037785 241 ELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQ 320 (365)
Q Consensus 241 eV~V~~~~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~ 320 (365)
+|.+++..++..++ +.|.|.||||||.+|.++|.++|++|.+|.|+|.|+++.++|+|+...|...
T Consensus 768 ~V~~d~~~s~~~t~--~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~------------ 833 (850)
T TIGR01693 768 RVTILNTASRKATI--MEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKL------------ 833 (850)
T ss_pred eEEEccCCCCCeEE--EEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCC------------
Confidence 34455444444444 5699999999999999999999999999999999999999999998887754
Q ss_pred hhhhhHHHHHHHHHHHH
Q 037785 321 QQQYSISSIEEALKAVM 337 (365)
Q Consensus 321 ~~~~~v~~l~eAL~~vl 337 (365)
.....+.|+++|..+|
T Consensus 834 -~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 834 -TDEEEQRLLEVLAASV 849 (850)
T ss_pred -CHHHHHHHHHHHHHHh
Confidence 1134577888887765
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.11 E-value=9.6e-06 Score=88.97 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=49.6
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCC
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSS 308 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~ 308 (365)
.|.|.|.||||||++|..+|..+||+|++|.|+|.|++++++|+|++.+|...
T Consensus 709 ~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~ 761 (774)
T PRK03381 709 VLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761 (774)
T ss_pred EEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcC
Confidence 36799999999999999999999999999999999999999999998887654
No 26
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.10 E-value=1.2e-05 Score=89.14 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=56.6
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
.|.|.|.||||||++|..+|..+||+|+.|.|+|.|++++++|+|...+ . .+....+.|+++|..
T Consensus 788 ~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~---~------------~~~~~~~~l~~~L~~ 852 (856)
T PRK03059 788 ILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSG---L------------SDNRLQIQLETELLD 852 (856)
T ss_pred EEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCC---C------------CCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999994222 1 023566788888887
Q ss_pred HHH
Q 037785 336 VME 338 (365)
Q Consensus 336 vl~ 338 (365)
+|.
T Consensus 853 ~L~ 855 (856)
T PRK03059 853 ALA 855 (856)
T ss_pred Hhc
Confidence 764
No 27
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.01 E-value=2.9e-05 Score=86.11 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=62.0
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe-eCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT-LGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT-~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
.|.|.|.||+|||++|..+|..+||+|+.|.|.| .+|+++++|+|.+.+|... .....+.|+++|.
T Consensus 679 ~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~-------------~~~~~~~l~~~L~ 745 (854)
T PRK01759 679 EIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-------------EFDRRRQLEQALT 745 (854)
T ss_pred EEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCC-------------CHHHHHHHHHHHH
Confidence 3569999999999999999999999999999866 8999999999999877654 1245677889998
Q ss_pred HHHHhcc
Q 037785 335 AVMEKTS 341 (365)
Q Consensus 335 ~vl~k~~ 341 (365)
.+|....
T Consensus 746 ~aL~~~~ 752 (854)
T PRK01759 746 KALNTNK 752 (854)
T ss_pred HHHcCCC
Confidence 8886543
No 28
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.96 E-value=4.2e-05 Score=84.70 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=62.5
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE-eeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT-TLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is-T~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
.|.|.+.||+|||++|..+|..+||+|+.|.|. |.||+++++|+|.+..+... . .....+.|+++|.
T Consensus 670 ~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~---~---------~~~~~~~i~~~L~ 737 (850)
T TIGR01693 670 EVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPP---A---------AERVFQELLQGLV 737 (850)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCC---C---------cHHHHHHHHHHHH
Confidence 367999999999999999999999999999997 88999999999999887654 1 2345677889998
Q ss_pred HHHHhc
Q 037785 335 AVMEKT 340 (365)
Q Consensus 335 ~vl~k~ 340 (365)
.+|...
T Consensus 738 ~~L~~~ 743 (850)
T TIGR01693 738 DVLAGL 743 (850)
T ss_pred HHHcCC
Confidence 888664
No 29
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.94 E-value=4.6e-05 Score=84.82 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=64.5
Q ss_pred eeeccCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee-CCeEEEEEEEEecCCCCCCCcccchhhhhhhh
Q 037785 244 VDASDEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL-GGRAKNVLFITADDQDSSCSSAAGEQHQQQQQ 322 (365)
Q Consensus 244 V~~~~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~-ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~ 322 (365)
+++....+.+. |.|+|.||+|||++|..+|..+||+|+.|.|.|. +|+++++|+|.+.+|... .
T Consensus 693 i~~~~~~~~t~--V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~-------------~ 757 (884)
T PRK05007 693 LSKQATRGGTE--IFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-------------S 757 (884)
T ss_pred EEecCCCCeEE--EEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC-------------C
Confidence 44433344333 5699999999999999999999999999998766 559999999999887654 1
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 037785 323 QYSISSIEEALKAVMEKT 340 (365)
Q Consensus 323 ~~~v~~l~eAL~~vl~k~ 340 (365)
....+.|+++|..+|...
T Consensus 758 ~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 758 QDRHQVIRKALEQALTQS 775 (884)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 245677888888888655
No 30
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.76 E-value=2.6e-05 Score=75.68 Aligned_cols=54 Identities=30% Similarity=0.481 Sum_probs=46.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCC--CccchhhhHHHHHHHHHHHHHHHHHH
Q 037785 176 KSHSEAERRRRERINNHLAKLRSLLPST--TKTDKASLLAEVIQHVKELKRQTSLI 229 (365)
Q Consensus 176 ~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~dK~siL~~ai~YIk~L~~~v~~L 229 (365)
.--+.-||||..-||..|..||+|+|.. .|..||+||..+.+||.+|+...-+|
T Consensus 62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 3345579999999999999999999965 79999999999999999998865443
No 31
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.68 E-value=7.4e-05 Score=70.93 Aligned_cols=57 Identities=21% Similarity=0.468 Sum_probs=48.2
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC--Cccc-hhhhHHHHHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST--TKTD-KASLLAEVIQHVKELKRQTSLIA 230 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~d-K~siL~~ai~YIk~L~~~v~~L~ 230 (365)
.+..|++-||+||..|.+.|..|+.+||.. .+.. .++||..|+.||+.|+.+..+..
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 456699999999999999999999999976 2222 68999999999999998765543
No 32
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.57 E-value=0.00029 Score=78.65 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=61.8
Q ss_pred EEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEE-EeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHH
Q 037785 255 IKASLCCEDRSDLLPDLIKSLKALRLRTLKAEI-TTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEAL 333 (365)
Q Consensus 255 V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~I-sT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL 333 (365)
..|.|+|.||+|||++|..+|..+||+|+.|.| |+-+|.++++|+|.+.+|... . ......+.|+++|
T Consensus 705 t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~---~--------~~~~r~~~i~~~L 773 (895)
T PRK00275 705 TQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPI---G--------DNPARIEQIREGL 773 (895)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCc---c--------chHHHHHHHHHHH
Confidence 346799999999999999999999999999997 677899999999998887643 0 1235667788888
Q ss_pred HHHHHhc
Q 037785 334 KAVMEKT 340 (365)
Q Consensus 334 ~~vl~k~ 340 (365)
..+|...
T Consensus 774 ~~~L~~~ 780 (895)
T PRK00275 774 TEALRNP 780 (895)
T ss_pred HHHHcCC
Confidence 8888643
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.55 E-value=0.00044 Score=76.11 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=58.1
Q ss_pred EEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 255 IKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 255 V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.|.|+|.||||++++|..+|..+|++|+.|.|.|.+|.++++|+|....+... ..+.|+++|.
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----------------~~~~l~~~L~ 663 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----------------DAALLRQDLR 663 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----------------hHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999987665422 1366777887
Q ss_pred HHHHh
Q 037785 335 AVMEK 339 (365)
Q Consensus 335 ~vl~k 339 (365)
.++..
T Consensus 664 ~~L~~ 668 (774)
T PRK03381 664 RALDG 668 (774)
T ss_pred HHHcC
Confidence 77755
No 34
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.51 E-value=0.00052 Score=76.95 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=59.8
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe-eCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT-LGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT-~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
.|.|.|.||+|+|.+|..+|..+|++|+.|.|.| .+|+++++|+|....+... ......+.|+++|.
T Consensus 734 ~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~------------~~~~~~~~l~~~L~ 801 (931)
T PRK05092 734 EVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDE------------DEPRRLARLAKAIE 801 (931)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCC------------CCHHHHHHHHHHHH
Confidence 4579999999999999999999999999999866 7999999999998776532 02355777888888
Q ss_pred HHHHh
Q 037785 335 AVMEK 339 (365)
Q Consensus 335 ~vl~k 339 (365)
.++..
T Consensus 802 ~~l~~ 806 (931)
T PRK05092 802 DALSG 806 (931)
T ss_pred HHHcC
Confidence 88754
No 35
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.47 E-value=0.00049 Score=76.52 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=60.7
Q ss_pred EEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEE-EeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHH
Q 037785 255 IKASLCCEDRSDLLPDLIKSLKALRLRTLKAEI-TTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEAL 333 (365)
Q Consensus 255 V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~I-sT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL 333 (365)
..|.|+|.||+|||++|..+|..+||+|+.|.| |+.+|.++++|+|.+..+... .....+.|+++|
T Consensus 679 ~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~-------------~~~~~~~i~~~l 745 (856)
T PRK03059 679 LQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVH-------------YRDIINLVEHEL 745 (856)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCC-------------hHHHHHHHHHHH
Confidence 356799999999999999999999999999998 678999999999998665411 234677788888
Q ss_pred HHHHHhc
Q 037785 334 KAVMEKT 340 (365)
Q Consensus 334 ~~vl~k~ 340 (365)
..+|...
T Consensus 746 ~~~l~~~ 752 (856)
T PRK03059 746 AERLAEQ 752 (856)
T ss_pred HHHHcCC
Confidence 8888654
No 36
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.47 E-value=5e-05 Score=83.17 Aligned_cols=57 Identities=26% Similarity=0.502 Sum_probs=51.7
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCC-CccchhhhHHHHHHHHHHHHHHHHHH
Q 037785 173 AASKSHSEAERRRRERINNHLAKLRSLLPST-TKTDKASLLAEVIQHVKELKRQTSLI 229 (365)
Q Consensus 173 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dK~siL~~ai~YIk~L~~~v~~L 229 (365)
..+.+||..|||-|-.||+++..|+.+||+. .|..|.++|..||+||++|+.....+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~l 332 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKL 332 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcccccc
Confidence 4578899999999999999999999999987 89999999999999999998865444
No 37
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.41 E-value=0.0016 Score=50.97 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=53.1
Q ss_pred EEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 255 IKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 255 V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.|++.+.||||++..|.++|.+.|.+|+.++.++.++++.-++.|+... ...+.|+.+|.
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~-------------------~~~~~l~~~L~ 63 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE-------------------DSLERLESALE 63 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH-------------------HHHHHHHHHHH
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc-------------------ccHHHHHHHHH
Confidence 34789999999999999999999999999999999999998888887662 23567888887
Q ss_pred HHHHhc
Q 037785 335 AVMEKT 340 (365)
Q Consensus 335 ~vl~k~ 340 (365)
.+..+-
T Consensus 64 ~l~~~~ 69 (76)
T PF13740_consen 64 ELAEEL 69 (76)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 775543
No 38
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.37 E-value=0.0012 Score=48.74 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=34.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR 293 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr 293 (365)
|.|.|.+|||+|.+|+.+|.++|+.|..+.+.+.++.
T Consensus 3 v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 3 VRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 5689999999999999999999999999999988873
No 39
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.27 E-value=0.00059 Score=64.96 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=48.2
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhc-CCCC-CccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 037785 175 SKSHSEAERRRRERINNHLAKLRSL-LPST-TKTDKASLLAEVIQHVKELKRQTSLIAET 232 (365)
Q Consensus 175 ~~~h~~~ER~RR~~in~~~~~Lrsl-vP~~-~k~dK~siL~~ai~YIk~L~~~v~~L~~~ 232 (365)
++.-.+.||||=+|+|+-|.+|+.- .++- ...-|+-||..||+||..||.-++++.+.
T Consensus 119 RKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 119 RKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445578999999999999999854 3433 67899999999999999999999888754
No 40
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.23 E-value=0.00072 Score=54.41 Aligned_cols=46 Identities=28% Similarity=0.511 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCC------CccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 037785 187 ERINNHLAKLRSLLPST------TKTDKASLLAEVIQHVKELKRQTSLIAET 232 (365)
Q Consensus 187 ~~in~~~~~LrslvP~~------~k~dK~siL~~ai~YIk~L~~~v~~L~~~ 232 (365)
+.||+.+..|+.|+|.. .|..-+-||.||.+||+.|++.|..|.+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999953 34455558999999999999999999875
No 41
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.22 E-value=0.0003 Score=66.37 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=48.7
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhcCCC----CCccchhhhHHHHHHHHHHHHHHHHHHH
Q 037785 175 SKSHSEAERRRRERINNHLAKLRSLLPS----TTKTDKASLLAEVIQHVKELKRQTSLIA 230 (365)
Q Consensus 175 ~~~h~~~ER~RR~~in~~~~~LrslvP~----~~k~dK~siL~~ai~YIk~L~~~v~~L~ 230 (365)
+..++..||+|-+.+|..|..||.+||. ..|..|..+|.-||.||+.|..-++.-+
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 3446778999999999999999999994 5688999999999999999998776554
No 42
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.20 E-value=0.0016 Score=72.51 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=58.0
Q ss_pred EEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe-eCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHH
Q 037785 255 IKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT-LGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEAL 333 (365)
Q Consensus 255 V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT-~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL 333 (365)
..|.|+|.|++|||++|..+|..+||+|+.|.|.| .+|.++++|+|.+..+... .....|+++|
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~---------------~~~~~i~~~l 755 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYAD---------------GDPQRLAAAL 755 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCCh---------------HHHHHHHHHH
Confidence 35679999999999999999999999999999865 7999999999987665411 2244588888
Q ss_pred HHHHHhc
Q 037785 334 KAVMEKT 340 (365)
Q Consensus 334 ~~vl~k~ 340 (365)
..+|...
T Consensus 756 ~~~l~~~ 762 (869)
T PRK04374 756 RQVLAGD 762 (869)
T ss_pred HHHHcCC
Confidence 8887653
No 43
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.09 E-value=0.0058 Score=47.92 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=52.1
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
+.+.|.||+|+..+|.+.|.+.|..|+.++.+..+++..-.+.+.... ...+.|+++|..+
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~-------------------~~~~~l~~~l~~~ 64 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW-------------------DAIAKLEAALPGL 64 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc-------------------ccHHHHHHHHHHH
Confidence 579999999999999999999999999999999999887777776442 1245677777775
Q ss_pred HHh
Q 037785 337 MEK 339 (365)
Q Consensus 337 l~k 339 (365)
-.+
T Consensus 65 ~~~ 67 (77)
T cd04893 65 ARR 67 (77)
T ss_pred HHH
Confidence 544
No 44
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.97 E-value=0.0053 Score=47.90 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=43.4
Q ss_pred CceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEEEecC
Q 037785 251 GKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFITADD 304 (365)
Q Consensus 251 g~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V~~~~ 304 (365)
+.+.+.++|.+.||+|+|.+|+.+|.+.|+.|.+.++.+. ++.+.-.|.|+..+
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 4466778899999999999999999999999999999885 67788878887654
No 45
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0048 Score=67.41 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=61.4
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEE-EeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEI-TTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~I-sT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
|.|.|.++|+|+..|..++...|++|+.|.| +|.+|+++++|+|.+.+|... .......++.+|.+
T Consensus 687 V~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~-------------~~dr~~~~~~~l~~ 753 (867)
T COG2844 687 VFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPV-------------EEDRRAALRGELIE 753 (867)
T ss_pred EEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCcc-------------chhHHHHHHHHHHH
Confidence 4589999999999999999999999999996 788999999999999998765 13455667777777
Q ss_pred HHHhccCC
Q 037785 336 VMEKTSGD 343 (365)
Q Consensus 336 vl~k~~~~ 343 (365)
++......
T Consensus 754 ~l~s~~~~ 761 (867)
T COG2844 754 ALLSGKAQ 761 (867)
T ss_pred HHhcCCCC
Confidence 77666433
No 46
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.0092 Score=46.29 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=52.5
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
|.+.+.||||++.+|.++|.++|++|.+.+.++.++.+.-.+.+....+ ..++.|+++|..+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~------------------~~~~~l~~~l~~l 63 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS------------------ADSEALLKDLLFK 63 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC------------------CCHHHHHHHHHHH
Confidence 4688999999999999999999999999999999988777776665433 1246678887777
Q ss_pred HHh
Q 037785 337 MEK 339 (365)
Q Consensus 337 l~k 339 (365)
..+
T Consensus 64 ~~~ 66 (75)
T cd04870 64 AHE 66 (75)
T ss_pred HHH
Confidence 654
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.0059 Score=46.75 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=45.0
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCC
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQ 305 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~ 305 (365)
|.|.|+|+.||=.+|.+++-+.||.|++..++|-|..-+-+|.|.....
T Consensus 3 itvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~ 51 (69)
T cd04894 3 ITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPP 51 (69)
T ss_pred EEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCC
Confidence 5689999999999999999999999999999999999999999886553
No 48
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.65 E-value=0.018 Score=44.69 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=48.5
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC------CeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG------GRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIE 330 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g------grv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (365)
+.+.|.|++|++.+|.+.|.+.|+.|.+.+..+.+ +...-.+.|....+ .....|+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~------------------~~~~~l~ 63 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG------------------TDLDALR 63 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC------------------CCHHHHH
Confidence 46899999999999999999999999999998887 44444444443321 1245677
Q ss_pred HHHHHHHHh
Q 037785 331 EALKAVMEK 339 (365)
Q Consensus 331 eAL~~vl~k 339 (365)
++|..+-.+
T Consensus 64 ~~l~~l~~~ 72 (81)
T cd04869 64 EELEELCDD 72 (81)
T ss_pred HHHHHHHHH
Confidence 777776544
No 49
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.61 E-value=0.0096 Score=47.55 Aligned_cols=67 Identities=13% Similarity=0.311 Sum_probs=52.8
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
+.+.|.|+||++++|.+.|.+.|+.|+..+..+.++.+.-.+.+...... ..++.|+++|..+
T Consensus 4 l~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~-----------------~~~~~L~~~l~~l 66 (88)
T cd04872 4 ITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESN-----------------LDFAELQEELEEL 66 (88)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCC-----------------CCHHHHHHHHHHH
Confidence 57899999999999999999999999999998888877766666644201 2256788888876
Q ss_pred HHhc
Q 037785 337 MEKT 340 (365)
Q Consensus 337 l~k~ 340 (365)
-.+.
T Consensus 67 ~~~~ 70 (88)
T cd04872 67 GKEL 70 (88)
T ss_pred HHHc
Confidence 6554
No 50
>PRK00194 hypothetical protein; Validated
Probab=96.56 E-value=0.015 Score=46.49 Aligned_cols=67 Identities=12% Similarity=0.279 Sum_probs=50.7
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
+.|.|.|+||++.+|.+.|.+.|+.|+..+-.+.++...-.+.+.-.... ..++.|+++|..+
T Consensus 6 ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~-----------------~~~~~l~~~l~~l 68 (90)
T PRK00194 6 ITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESK-----------------KDFAELKEELEEL 68 (90)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCC-----------------CCHHHHHHHHHHH
Confidence 67999999999999999999999999999988888766665555433211 1246688888776
Q ss_pred HHhc
Q 037785 337 MEKT 340 (365)
Q Consensus 337 l~k~ 340 (365)
-.+.
T Consensus 69 ~~~~ 72 (90)
T PRK00194 69 GKEL 72 (90)
T ss_pred HHHc
Confidence 5443
No 51
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.40 E-value=0.03 Score=43.10 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=30.9
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT 289 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT 289 (365)
+.+.|.||+|++.+|.+.|.++|+.|+..+..+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 468999999999999999999999999999886
No 52
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.01 E-value=0.055 Score=41.10 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=38.7
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC-CeEEEEEEEEecC
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG-GRAKNVLFITADD 304 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g-grv~~vf~V~~~~ 304 (365)
+.+.+.+|+|+|.+|+.+|.+.|..|.+.++.... +.+...|.++..+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~ 50 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS 50 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC
Confidence 45788999999999999999999999999887764 5655556665544
No 53
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.81 E-value=0.09 Score=38.74 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=34.7
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee-----CCeEEEEEEEEe
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL-----GGRAKNVLFITA 302 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~-----ggrv~~vf~V~~ 302 (365)
.|.+.+++|.|.+|+++|.+.|+.|.+...... .+...-.|.+..
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~ 51 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET 51 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe
Confidence 467899999999999999999999998876643 344444455544
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.24 E-value=0.091 Score=39.91 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=37.1
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee-CCeEEEEEEEEe
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL-GGRAKNVLFITA 302 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~-ggrv~~vf~V~~ 302 (365)
++.+.+.+++|+|.+|+++|.+.|..|...+.... ++...-.|.++.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v 49 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT 49 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence 46788999999999999999999999999877553 355555555554
No 55
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.19 E-value=0.021 Score=59.19 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=50.8
Q ss_pred HHhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCCCc----cchhhhHHHHHHHHHHHHHHHHHH
Q 037785 169 AKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTK----TDKASLLAEVIQHVKELKRQTSLI 229 (365)
Q Consensus 169 ~k~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~~k----~dK~siL~~ai~YIk~L~~~v~~L 229 (365)
.|++.++...+..||-|-..||+.|.+|..|.----| -.|..||..|+.-|-.|+++|.+-
T Consensus 521 eREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 521 EREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 3555677889999999999999999999988653222 368999999999999999999864
No 56
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.39 E-value=0.19 Score=38.62 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=31.5
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL 290 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ 290 (365)
+.|.|.+|+|+|.+|+.++.+.|..+.+.++.+.
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 5688999999999999999999999999998765
No 57
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.00 E-value=0.47 Score=33.45 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=35.0
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC-CeEEEEEEEEe
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG-GRAKNVLFITA 302 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g-grv~~vf~V~~ 302 (365)
++.|.+++|.+.+|+..|.+.++.+.+..+...+ +...-.|.+..
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 4678999999999999999999999999887665 43433444433
No 58
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.83 E-value=0.5 Score=46.33 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=50.3
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe--eCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT--LGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEAL 333 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT--~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL 333 (365)
.|.+.|.||+|+..+|.++|.++|+.|.+.+.++ .+|...-.+.+... .. ...++.|+++|
T Consensus 8 vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~----------------~~~~~~L~~~L 70 (286)
T PRK06027 8 VLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GL----------------IFNLETLRADF 70 (286)
T ss_pred EEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CC----------------CCCHHHHHHHH
Confidence 3679999999999999999999999999999999 88843322333221 11 12266788888
Q ss_pred HHHHHhcc
Q 037785 334 KAVMEKTS 341 (365)
Q Consensus 334 ~~vl~k~~ 341 (365)
..+-+...
T Consensus 71 ~~l~~~l~ 78 (286)
T PRK06027 71 AALAEEFE 78 (286)
T ss_pred HHHHHHhC
Confidence 87766654
No 59
>PRK08577 hypothetical protein; Provisional
Probab=93.76 E-value=0.75 Score=39.82 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=39.8
Q ss_pred CceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEEEecC
Q 037785 251 GKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFITADD 304 (365)
Q Consensus 251 g~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V~~~~ 304 (365)
.+..+.+.+.+.+++|+|.+|+++|.+.+.++.+.+..+.. +...-.|.+...+
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~ 108 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSK 108 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCC
Confidence 33345577999999999999999999999999988877654 4344444454333
No 60
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.61 E-value=0.74 Score=35.25 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=38.0
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCC-eEEEEEEEEecC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGG-RAKNVLFITADD 304 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~gg-rv~~vf~V~~~~ 304 (365)
+...+++|.|++|+.+|.+.|+.+++.......+ ...+.|+|....
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 4567899999999999999999999997776655 556778887765
No 61
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=93.37 E-value=0.6 Score=45.70 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=49.2
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.+.|.|++|+.+.|...|.+.|..|+..+-+.. +|+..=.+.+..... ....+.|+++|.
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-----------------~~~~~~l~~~l~ 65 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-----------------RLEESSLLAAFK 65 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-----------------CCCHHHHHHHHH
Confidence 5689999999999999999999999999998774 355544444443221 123567888888
Q ss_pred H-HHHhcc
Q 037785 335 A-VMEKTS 341 (365)
Q Consensus 335 ~-vl~k~~ 341 (365)
. +-++..
T Consensus 66 ~~~~~~~~ 73 (280)
T TIGR00655 66 SALAEKFE 73 (280)
T ss_pred HHHHHHhC
Confidence 8 555443
No 62
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.07 E-value=0.5 Score=46.49 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=48.6
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE--eeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT--TLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is--T~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.+.|.||+|+.+.|...|-+.|+.|+..+-. +..+..+-.+.+...... ....+.|+++|.
T Consensus 12 itv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~----------------~~~~~~l~~~l~ 75 (289)
T PRK13010 12 LTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE----------------AASVDTFRQEFQ 75 (289)
T ss_pred EEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC----------------CCCHHHHHHHHH
Confidence 57999999999999999999999999999985 334433332223222111 133677888888
Q ss_pred HHHHhcc
Q 037785 335 AVMEKTS 341 (365)
Q Consensus 335 ~vl~k~~ 341 (365)
.+-++-.
T Consensus 76 ~l~~~l~ 82 (289)
T PRK13010 76 PVAEKFD 82 (289)
T ss_pred HHHHHhC
Confidence 8776654
No 63
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.05 E-value=0.53 Score=35.07 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=34.2
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFI 300 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V 300 (365)
+.|.+.+++|+|.+|+.+|.+.|..+.+....+.. +...-.+.+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 45788999999999999999999999988876553 444333433
No 64
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.03 E-value=1.2 Score=34.66 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=38.4
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC-CeEEEEEEEEecCC
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG-GRAKNVLFITADDQ 305 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g-grv~~vf~V~~~~~ 305 (365)
.+...+++|.|.+|++.|.++|+.+++....... +....+|+|.....
T Consensus 5 ~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 5 VFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 3556789999999999999999999998876664 35567888877653
No 65
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=92.81 E-value=0.26 Score=45.55 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=52.1
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
.|.+.+.||||++..|.++|.++|..|+.++.+.++|.+--++.|.... ..+..|+.+|..
T Consensus 10 viTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~-------------------~~~~~le~~L~~ 70 (190)
T PRK11589 10 VITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW-------------------NAITLIESTLPL 70 (190)
T ss_pred EEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh-------------------hHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999777777662221 245667777776
Q ss_pred HHHh
Q 037785 336 VMEK 339 (365)
Q Consensus 336 vl~k 339 (365)
+-++
T Consensus 71 l~~~ 74 (190)
T PRK11589 71 KGAE 74 (190)
T ss_pred hhhh
Confidence 6544
No 66
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.80 E-value=0.48 Score=34.81 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=31.4
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG 291 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g 291 (365)
.+.+.+.+++|.|.+|+..|.+.+..|.+....+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 356889999999999999999999999988877653
No 67
>PRK04435 hypothetical protein; Provisional
Probab=92.56 E-value=0.64 Score=41.11 Aligned_cols=51 Identities=25% Similarity=0.301 Sum_probs=40.3
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee-CCeEEEEEEEEecC
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL-GGRAKNVLFITADD 304 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~-ggrv~~vf~V~~~~ 304 (365)
.+.+.+.+.+++|+|++|+++|.+.|..|...+.+.. +|.+.-+|.|...+
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~ 120 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS 120 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC
Confidence 4567789999999999999999999999998886543 56565566665543
No 68
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.40 E-value=0.59 Score=31.07 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.2
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG 291 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g 291 (365)
.+.|.+++|.+.+|+.+|...++.+.........
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 4778999999999999999999999999886654
No 69
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.10 E-value=0.52 Score=33.91 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=36.7
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC-CeEEEEEEEEe
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG-GRAKNVLFITA 302 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g-grv~~vf~V~~ 302 (365)
.+...+++|.|.+++.+|.+.|+.|....+...+ +..+-.|.+.+
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 4678999999999999999999999888876655 66776666644
No 70
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.66 E-value=1.7 Score=35.49 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=39.0
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecCC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADDQ 305 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~~ 305 (365)
+...+++|.|.+++..|.+.|+.+.+-+.-...+. --+.|+|.....
T Consensus 19 f~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 19 FSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 56688999999999999999999999988776544 457888887653
No 71
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=91.49 E-value=0.64 Score=45.31 Aligned_cols=84 Identities=11% Similarity=0.199 Sum_probs=56.4
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
+.++|.+++|+...|...|.+.|..|+.++-. ++..-..|+....-.... .....+.+++++..+
T Consensus 10 LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~-------------~~~~~~~l~~~f~~~ 74 (287)
T COG0788 10 LTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEG-------------GPLDREALRAAFAPL 74 (287)
T ss_pred EEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCC-------------CcccHHHHHHHHHHH
Confidence 46999999999999999999999999998866 344344455544443211 124567889999887
Q ss_pred HHhccCCCCCCCCCCCcce
Q 037785 337 MEKTSGDESSSGSVKRQRT 355 (365)
Q Consensus 337 l~k~~~~~~~~~~~kr~r~ 355 (365)
.++....-.-.-..+|.|+
T Consensus 75 a~~f~m~~~~~~~~~~~ri 93 (287)
T COG0788 75 AEEFGMDWRLHDAAQRKRI 93 (287)
T ss_pred HHhhCceeEEeccccCceE
Confidence 7766543222233444444
No 72
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.47 E-value=0.74 Score=33.64 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=35.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFIT 301 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V~ 301 (365)
+.+.+.+++|+|.+|+..|.+.+..+.+.+..+. ++...-.|.+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 3467899999999999999999999998887664 34455555554
No 73
>PRK07334 threonine dehydratase; Provisional
Probab=91.11 E-value=1.3 Score=45.25 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=41.7
Q ss_pred eEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee-----CCeEEEEEEEEecC
Q 037785 253 FVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL-----GGRAKNVLFITADD 304 (365)
Q Consensus 253 ~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~-----ggrv~~vf~V~~~~ 304 (365)
+.+.+.|.+.+|+|+|.+|+.+|.+.++.|.+.++.+. ++.+.-.|.|+..+
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 45678899999999999999999999999999998764 45555555555543
No 74
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.04 E-value=0.83 Score=33.16 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=36.4
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFI 300 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V 300 (365)
+.|.+.+++|.|.+|+++|.+.|+.|.+..+...+ +.....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 34678999999999999999999999999987754 566666655
No 75
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=90.96 E-value=1.4 Score=43.27 Aligned_cols=69 Identities=4% Similarity=0.076 Sum_probs=47.1
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
|.|.|.||+|+..+|.+.|.++|++|...+..+..+.-+....++...... ...+.|+++|..+
T Consensus 10 itv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~----------------~~~~~L~~~L~~l 73 (286)
T PRK13011 10 LTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG----------------LDEDALRAGFAPI 73 (286)
T ss_pred EEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC----------------CCHHHHHHHHHHH
Confidence 679999999999999999999999999998864322222223333321111 2256688888887
Q ss_pred HHhcc
Q 037785 337 MEKTS 341 (365)
Q Consensus 337 l~k~~ 341 (365)
-..-.
T Consensus 74 ~~~l~ 78 (286)
T PRK13011 74 AARFG 78 (286)
T ss_pred HHHhC
Confidence 66543
No 76
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.45 E-value=2.4 Score=31.57 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=29.9
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL 290 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ 290 (365)
+.+.+++++|.|.+|++.|.+.|+.|....+...
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 4578899999999999999999999998876554
No 77
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.28 E-value=1.1 Score=32.65 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=33.2
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEE
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFI 300 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V 300 (365)
.+.+.+++|.|.+|+..|.+.|+.|.+...... ++...-.|.+
T Consensus 3 ~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 3 IVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 467899999999999999999999998887652 3444433433
No 78
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.88 E-value=0.29 Score=51.64 Aligned_cols=39 Identities=38% Similarity=0.585 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----CCccchhhhHHHHHHHHH
Q 037785 182 ERRRRERINNHLAKLRSLLPS----TTKTDKASLLAEVIQHVK 220 (365)
Q Consensus 182 ER~RR~~in~~~~~LrslvP~----~~k~dK~siL~~ai~YIk 220 (365)
-||-|+|+|.-+..|.+|+|. .+|.||.|||.=++.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 355689999999999999995 489999999999999986
No 79
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=89.84 E-value=1.4 Score=32.91 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=35.5
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEe
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITA 302 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~ 302 (365)
+.|..+++||.|.+|+++|.+.|+.|.+..+...++. .++.+..
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 5577899999999999999999999998887666553 4555544
No 80
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=89.61 E-value=4 Score=37.80 Aligned_cols=70 Identities=6% Similarity=0.040 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccceeec----cCCCceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC
Q 037785 217 QHVKELKRQTSLIAETSPVPTEMDELTVDAS----DEDGKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG 291 (365)
Q Consensus 217 ~YIk~L~~~v~~L~~~~~~p~~~~eV~V~~~----~~dg~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g 291 (365)
+|+..|+..+..+.+...+ .+.+... .......+.|.+...||||++.+|.++|.+.|+.|.+-+..|.+
T Consensus 59 ~~~~~le~~L~~l~~~~~L-----~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~ 132 (190)
T PRK11589 59 NAITLIESTLPLKGAELDL-----LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQP 132 (190)
T ss_pred hHHHHHHHHHHhhhhhcCe-----EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeec
Confidence 4778888887777643211 1112110 01111124577999999999999999999999999988877765
No 81
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=89.58 E-value=0.2 Score=44.74 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=46.1
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC--CccchhhhHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST--TKTDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~dK~siL~~ai~YIk~L~~~v 226 (365)
.+.-|+..||+|=..+|+.|..||.++|.. .|..|.--|.-|..||-.|-+-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 455699999999999999999999999964 78888888999999999886643
No 82
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.30 E-value=3.6 Score=30.68 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=34.4
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEEEe
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFITA 302 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V~~ 302 (365)
++.+..++++|.|.++++.|.+.|+.|.+....-. ++...-+|.+..
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 45678899999999999999999999987654322 344444555443
No 83
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=88.97 E-value=0.62 Score=51.11 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=39.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFIT 301 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~ 301 (365)
++|...||+|+|..|+++|. +|..|.|+|+|..++++|+++
T Consensus 634 ~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 634 LEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred EEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 57889999999999999999 999999999999999999998
No 84
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.62 E-value=2 Score=33.16 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=38.5
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADD 304 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~ 304 (365)
+...+++|.|.+++..|...|+.+++-+.-...+. --+.|+|+.+.
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 45578999999999999999999999998776654 46788887775
No 85
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.58 E-value=1.7 Score=32.95 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=28.4
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL 290 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ 290 (365)
.+.-+|+||-|.++++.|.+.|..|++......
T Consensus 3 ~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 3 TFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 456689999999999999999999998876554
No 86
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=88.37 E-value=5 Score=44.18 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=53.1
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHH
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVME 338 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~ 338 (365)
+.+.+++|+|++++.+|--+|+.|.+|++.+ +|..+..|.|....|... ....+++++++.+.
T Consensus 552 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~ 614 (693)
T PRK00227 552 IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDF----------------DPQEFLQAYKSGVY 614 (693)
T ss_pred EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCC----------------ChHHHHHHHHHhhc
Confidence 4569999999999999999999999999999 999999999998776532 23557777776654
Q ss_pred hc
Q 037785 339 KT 340 (365)
Q Consensus 339 k~ 340 (365)
-.
T Consensus 615 ~~ 616 (693)
T PRK00227 615 SE 616 (693)
T ss_pred CC
Confidence 33
No 87
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.34 E-value=1.8 Score=31.41 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=31.9
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEE
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFI 300 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V 300 (365)
.+.-++++|.|.+++.+|.+.|+.|.+....... +...-.|.+
T Consensus 3 ~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 3 AVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 3566899999999999999999999877764443 444444443
No 88
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=86.89 E-value=1.2 Score=36.48 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=50.9
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAV 336 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~v 336 (365)
|.|...||+|+.+.|.++|.++|+.|++.+=+-.+|++--.+.|...... .....++..|...
T Consensus 6 ITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~-----------------~d~~~lr~~l~~~ 68 (90)
T COG3830 6 ITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEV-----------------VDFAALRDELAAE 68 (90)
T ss_pred EEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHh-----------------ccHHHHHHHHHHH
Confidence 67899999999999999999999999999988888887666666544321 2345566666666
Q ss_pred HHhc
Q 037785 337 MEKT 340 (365)
Q Consensus 337 l~k~ 340 (365)
.++-
T Consensus 69 ~~~l 72 (90)
T COG3830 69 GKKL 72 (90)
T ss_pred HHhc
Confidence 5544
No 89
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=86.74 E-value=0.81 Score=33.91 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEE
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFI 300 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V 300 (365)
+.+.+++|+|.+|+.+|.+.|..+...+..+.++.+.-.|.+
T Consensus 4 ~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 4 HIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 678999999999999999999999887665544555444443
No 90
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.15 E-value=0.56 Score=50.82 Aligned_cols=41 Identities=34% Similarity=0.491 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCccchhhhHHHHHHHHHH
Q 037785 181 AERRRRERINNHLAKLRSLLPS----TTKTDKASLLAEVIQHVKE 221 (365)
Q Consensus 181 ~ER~RR~~in~~~~~LrslvP~----~~k~dK~siL~~ai~YIk~ 221 (365)
+-|.||.|=|+-|.+|..+||- .+-.|||||+.=||.|+|-
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 5788999999999999999993 2678999999999999874
No 91
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=85.97 E-value=3.6 Score=45.59 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=42.8
Q ss_pred eEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEEEecC
Q 037785 253 FVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFITADD 304 (365)
Q Consensus 253 ~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V~~~~ 304 (365)
+.+.+.|.+.+|+|+|.+|+.+|.+.++.|.+.++.+. ++.+.-.|.|+..+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 56778899999999999999999999999999998765 46555556665544
No 92
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.17 E-value=0.87 Score=46.72 Aligned_cols=43 Identities=35% Similarity=0.441 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC----CccchhhhHHHHHHHHHHHH
Q 037785 181 AERRRRERINNHLAKLRSLLPST----TKTDKASLLAEVIQHVKELK 223 (365)
Q Consensus 181 ~ER~RR~~in~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~L~ 223 (365)
+-|.||++-|-.|..|..++|-. +..||++|+.=|..|||.-.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 46889999999999999999954 56899999999999998643
No 93
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=84.81 E-value=0.56 Score=45.33 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=44.3
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCC---CCccchhhhHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPS---TTKTDKASLLAEVIQHVKELKRQ 225 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~---~~k~dK~siL~~ai~YIk~L~~~ 225 (365)
.+..-+..||+|.-.+|+-|..||.++|. ..|+.|.-.|.-|-+||..|.+-
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 34445678999999999999999999994 37788999999999999988764
No 94
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.67 E-value=2.2 Score=33.98 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=39.4
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE--eeCCeEEEEEEEEecCC
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT--TLGGRAKNVLFITADDQ 305 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is--T~ggrv~~vf~V~~~~~ 305 (365)
|++|...||-.+.|+.-||..|+..|.+|+|. ..+++-..++.+--.++
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~ 53 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH 53 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence 45788889999999999999999999999996 56777766655554443
No 95
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=83.59 E-value=2.4 Score=40.99 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=45.1
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC---CccchhhhHHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST---TKTDKASLLAEVIQHVKELKRQTS 227 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~L~~~v~ 227 (365)
++..-+..||+|...+|.-|..||.+||.. .|..|-.-|..|-.||--|-..+.
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 344567899999999999999999999965 566788889999999988876543
No 96
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=83.24 E-value=3.4 Score=30.65 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=35.1
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe--eCCeEEEEEEEEe
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITT--LGGRAKNVLFITA 302 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT--~ggrv~~vf~V~~ 302 (365)
+...+++|.+.+|...|.+.|+.|.+..+.. .++....+|.+..
T Consensus 4 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 4 VRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 5789999999999999999999998877654 4566666665544
No 97
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=83.00 E-value=5.6 Score=43.89 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=42.5
Q ss_pred ceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCC-eEEEEEEEEecC
Q 037785 252 KFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGG-RAKNVLFITADD 304 (365)
Q Consensus 252 ~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~gg-rv~~vf~V~~~~ 304 (365)
.+.+.+.|.+.+|+|+|.+|+.+|.+.++.|.++++.+.++ .+.-.|.|+..+
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 35677889999999999999999999999999999877654 444455555544
No 98
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=82.44 E-value=6.2 Score=34.83 Aligned_cols=52 Identities=29% Similarity=0.396 Sum_probs=43.5
Q ss_pred eEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEE-EeeCCeEEEEEEEEecC
Q 037785 253 FVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEI-TTLGGRAKNVLFITADD 304 (365)
Q Consensus 253 ~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~I-sT~ggrv~~vf~V~~~~ 304 (365)
..+.+.+.-++|.|.|++++.++...++.|+..+= ...+|++--++.+....
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ss 123 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSS 123 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchh
Confidence 35667788999999999999999999999998884 47889988888776553
No 99
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.21 E-value=12 Score=29.31 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=37.6
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADD 304 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~ 304 (365)
+...+++|.|.+++..|+..|+.+.+-+.-...+. ..+.|+|..+.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 44578899999999999999999999988766444 56788887764
No 100
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=81.17 E-value=6.2 Score=35.49 Aligned_cols=63 Identities=8% Similarity=0.166 Sum_probs=45.8
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.|.-++++|.|.+|...|...|+.|.+-.+...+ +...-+|.|.. + ...++.|.+.|.
T Consensus 4 isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d-----------------~~~i~qi~kQl~ 64 (157)
T TIGR00119 4 LSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--D-----------------DKVLEQITKQLN 64 (157)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--C-----------------HHHHHHHHHHHh
Confidence 45778999999999999999999999998887665 44455555543 1 134666777776
Q ss_pred HHHH
Q 037785 335 AVME 338 (365)
Q Consensus 335 ~vl~ 338 (365)
.+++
T Consensus 65 Kli~ 68 (157)
T TIGR00119 65 KLVD 68 (157)
T ss_pred cCcc
Confidence 6654
No 101
>PRK11899 prephenate dehydratase; Provisional
Probab=80.73 E-value=11 Score=37.04 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=39.7
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecCC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADDQ 305 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~~ 305 (365)
+...++||.|.++|.+|...|+.+++-+.-...++ --++|+|.....
T Consensus 199 ~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 199 FRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 45579999999999999999999999999877555 577888877764
No 102
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=80.28 E-value=3.6 Score=47.37 Aligned_cols=40 Identities=33% Similarity=0.368 Sum_probs=26.4
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCccceeec
Q 037785 204 TKTDKASLLAEVIQHVKELKRQTSLIAETSPVPT-EMDELTVDAS 247 (365)
Q Consensus 204 ~k~dK~siL~~ai~YIk~L~~~v~~L~~~~~~p~-~~~eV~V~~~ 247 (365)
.+.||.|.|+ | ||+|-..|..|-+.+..|- +..+|.|...
T Consensus 104 ~~~Dkrs~lg-a---lkylPhavlkLLeNmP~pWe~~~evkvlyh 144 (2365)
T COG5178 104 TKVDKRSYLG-A---LKYLPHAVLKLLENMPSPWEDVSEVKVLYH 144 (2365)
T ss_pred hhhhhHhhhh-h---hhhchHHHHHHHhcCCChHhhhheeeEEee
Confidence 5667777765 3 5566677877777765554 3567777664
No 103
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=80.25 E-value=7.9 Score=42.54 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=42.5
Q ss_pred ceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC-CeEEEEEEEEecC
Q 037785 252 KFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG-GRAKNVLFITADD 304 (365)
Q Consensus 252 ~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g-grv~~vf~V~~~~ 304 (365)
.+.+.+.|.+.+|+|+|.+|+.+|.+.+..|.+.++.+.. +.+.-.|.|+..+
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 3567788999999999999999999999999999998774 5544445555444
No 104
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=79.71 E-value=7.2 Score=31.65 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=36.8
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEec
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITAD 303 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~ 303 (365)
+++..++++|.|.+|...|..-|..|.+-++....+.-+.-+.+...
T Consensus 5 isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 5 LKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 45777899999999999999999999988887666555554555444
No 105
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=79.10 E-value=8.6 Score=34.73 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=35.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFIT 301 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V~ 301 (365)
+.+.-+++||.|.+|...|...|..|.+-.+.... +...-+|.|.
T Consensus 5 IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~ 51 (161)
T PRK11895 5 LSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS 51 (161)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE
Confidence 45778999999999999999999999998877654 4444444443
No 106
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=78.61 E-value=10 Score=34.66 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=47.5
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe--eCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT--LGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT--~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.+...++||+|.+|...|...|+.|.+-++.. ..+...-++.+ ..+ ...++.|.+.|.
T Consensus 5 isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv--~~~-----------------~~~ieqL~kQL~ 65 (174)
T CHL00100 5 LSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVV--PGD-----------------DRTIEQLTKQLY 65 (174)
T ss_pred EEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEE--ECC-----------------HHHHHHHHHHHH
Confidence 457789999999999999999999999888865 33444333333 221 122678888888
Q ss_pred HHHHhcc
Q 037785 335 AVMEKTS 341 (365)
Q Consensus 335 ~vl~k~~ 341 (365)
.+++-..
T Consensus 66 KLidVl~ 72 (174)
T CHL00100 66 KLVNILK 72 (174)
T ss_pred HHhHhhE
Confidence 8876554
No 107
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=77.04 E-value=32 Score=41.38 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=53.5
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeE---EEeeCC--eEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHH
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAE---ITTLGG--RAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISS 328 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~---IsT~gg--rv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 328 (365)
.+.++|....++..|++|+-.|+++||.|+... |.+-++ ..++.|.+....+... + .....+.
T Consensus 489 ~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~-----~-------~~~~~~~ 556 (1528)
T PF05088_consen 489 RLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDAL-----D-------LDDIRER 556 (1528)
T ss_pred eEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccc-----c-------HHHHHHH
Confidence 455678888899999999999999999999976 444322 3588888887776532 0 1244556
Q ss_pred HHHHHHHHHHhcc
Q 037785 329 IEEALKAVMEKTS 341 (365)
Q Consensus 329 l~eAL~~vl~k~~ 341 (365)
+.+++..+.....
T Consensus 557 ~~~a~~~v~~g~~ 569 (1528)
T PF05088_consen 557 FEEAFEAVWNGRA 569 (1528)
T ss_pred HHHHHHHHhcCCC
Confidence 6677776654443
No 108
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=76.99 E-value=8.5 Score=30.52 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=30.4
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCC
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGG 292 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~gg 292 (365)
+.+..+++||.|.+|+..|..-|..|.+-++....+
T Consensus 5 isi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~ 40 (76)
T PRK06737 5 FSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDT 40 (76)
T ss_pred EEEEEecCCCHHHHHHHHHhccCcceEEEEecccCC
Confidence 457778999999999999999999998888775443
No 109
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.90 E-value=7.3 Score=33.15 Aligned_cols=46 Identities=7% Similarity=0.122 Sum_probs=37.6
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADD 304 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~ 304 (365)
+...+++|.|.+||..|...|+.+++-+.-+..+. --+.|+|..+.
T Consensus 46 fsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 46 FSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 45578999999999999999999999888776444 45778887764
No 110
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.33 E-value=25 Score=26.33 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=25.9
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTL 290 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ 290 (365)
|.-+++||-|.+++++|.+ |..|+..+....
T Consensus 3 v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred EECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 4558999999999999999 988887776544
No 111
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=71.14 E-value=10 Score=28.54 Aligned_cols=39 Identities=5% Similarity=0.147 Sum_probs=29.6
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEEe--eCCeEEEEEEEE
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEITT--LGGRAKNVLFIT 301 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~IsT--~ggrv~~vf~V~ 301 (365)
+++|.|.+|+..|..-|..|.+-++.. .++...-++.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~ 41 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS 41 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe
Confidence 579999999999999999999988887 445544444443
No 112
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=67.92 E-value=23 Score=28.08 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=33.8
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFI 300 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V 300 (365)
+++.-+++||.|.+|+..++.-|..|.+-++... ++...-++.+
T Consensus 6 lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 6 LTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred EEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 4567789999999999999999999888887764 3444444444
No 113
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=67.48 E-value=24 Score=34.71 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=38.3
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeE-EEEEEEEecCC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRA-KNVLFITADDQ 305 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv-~~vf~V~~~~~ 305 (365)
+.-.++||.|.++|..|...|++..+-+.-...++. -+.|+|.....
T Consensus 199 f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~ 246 (279)
T COG0077 199 FSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH 246 (279)
T ss_pred EEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC
Confidence 445599999999999999999999999998777665 66666665554
No 114
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=65.56 E-value=37 Score=34.83 Aligned_cols=47 Identities=13% Similarity=0.255 Sum_probs=39.1
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecCC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADDQ 305 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~~ 305 (365)
+.-.++||.|.++|.+|...|+..++-+.-...+. --+.|+|.....
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 34469999999999999999999999998866665 578888877764
No 115
>PRK06382 threonine dehydratase; Provisional
Probab=63.78 E-value=39 Score=34.54 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=36.9
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE-----eeCCeEEEEEEEEec
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT-----TLGGRAKNVLFITAD 303 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is-----T~ggrv~~vf~V~~~ 303 (365)
.+++.|.-.|+||.|.+|++.|.+.|..|++.... .-.+...-+|.|+..
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 44567788999999999999999999999887653 113344555555544
No 116
>PRK11898 prephenate dehydratase; Provisional
Probab=63.71 E-value=39 Score=33.06 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=37.5
Q ss_pred eeeCC-CCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecCC
Q 037785 259 LCCED-RSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADDQ 305 (365)
Q Consensus 259 I~C~~-RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~~ 305 (365)
+...+ ++|.|.++|..|.+.|+.+++-+.-...++ .-+.|+|.....
T Consensus 201 f~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 201 LTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 45544 699999999999999999999998876655 457888877653
No 117
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=60.61 E-value=29 Score=25.02 Aligned_cols=27 Identities=4% Similarity=0.057 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEEe
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEITT 289 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~IsT 289 (365)
+.+|++.+|+++|.+.|+.|.-...++
T Consensus 13 ~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 13 GTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 578999999999999999886554433
No 118
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=60.50 E-value=11 Score=34.54 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=42.7
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecC
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADD 304 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~ 304 (365)
|.+...+|||+.-.|.++..+.|-.++.+.++.+|+.+.-++-|....
T Consensus 8 Itavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~ 55 (176)
T COG2716 8 ITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSW 55 (176)
T ss_pred EEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCH
Confidence 678899999999999999999999999999999999887777665544
No 119
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=59.86 E-value=31 Score=25.47 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHhCCCeee
Q 037785 263 DRSDLLPDLIKSLKALRLRTL 283 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv 283 (365)
+.+|++.+++.+|.+.|+.+.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 579999999999999999996
No 120
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=58.87 E-value=36 Score=37.65 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=39.2
Q ss_pred CceEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEE
Q 037785 251 GKFVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKN 296 (365)
Q Consensus 251 g~~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~ 296 (365)
+.+.+.|.|...+|+|+|.+|+.+|-+.+..|.+.++.+.++++..
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~ 669 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFAT 669 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEE
Confidence 3467788999999999999999999999999999999887554433
No 121
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=58.77 E-value=5.5 Score=43.52 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=50.4
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCC-----CccchhhhHHHHHHHHHHHHHHHHHHHhcC
Q 037785 173 AASKSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKELKRQTSLIAETS 233 (365)
Q Consensus 173 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-----~k~dK~siL~~ai~YIk~L~~~v~~L~~~~ 233 (365)
.+...|+-+|.+||..|.-.|..|.+++.+. .|+.+..-+..++.||..++.....+.++.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 4566799999999999999999999998865 456666679999999999988777666553
No 122
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.71 E-value=36 Score=23.76 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEE
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEIT 288 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~Is 288 (365)
++++++.+++++|.+.++.+.....+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 57899999999999999988766553
No 123
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.37 E-value=12 Score=40.71 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCcCcccCC
Q 037785 62 IPEVSPILPWSLTQVHSF 79 (365)
Q Consensus 62 ~~~v~~~l~~~~p~~~~~ 79 (365)
||..+|+..|-+|+++..
T Consensus 86 ~P~~~~~~~~~~~A~~~~ 103 (1179)
T KOG3648|consen 86 QPPQPPFPAGGPPARRGG 103 (1179)
T ss_pred CCCCCCcccCCCHHHhcC
Confidence 567788889988888753
No 124
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=57.10 E-value=72 Score=32.05 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=36.2
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe-----eCCeEEEEEEEEec
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT-----LGGRAKNVLFITAD 303 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT-----~ggrv~~vf~V~~~ 303 (365)
.+++.|.-+|+||.|.++++.+.+.|..|++..... -.+.+.-.|.|+..
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~ 359 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR 359 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC
Confidence 455678889999999999999999999888775542 12444444555443
No 125
>PRK08198 threonine dehydratase; Provisional
Probab=55.89 E-value=79 Score=32.09 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=30.5
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT 289 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT 289 (365)
.+.+.|.-+|+||.|.++++.|.+.|..|+..+..-
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 345667889999999999999999999888877653
No 126
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=54.38 E-value=48 Score=27.57 Aligned_cols=44 Identities=5% Similarity=0.091 Sum_probs=32.9
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFI 300 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V 300 (365)
+++..+++||.|.+|...|..-|..|-+-.+...++.-+.-+.+
T Consensus 11 isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmti 54 (96)
T PRK08178 11 LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWL 54 (96)
T ss_pred EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEE
Confidence 46778999999999999999999888877766554443333333
No 127
>PLN02317 arogenate dehydratase
Probab=53.34 E-value=75 Score=32.70 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=38.1
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe---------------EEEEEEEEecCC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR---------------AKNVLFITADDQ 305 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr---------------v~~vf~V~~~~~ 305 (365)
+.-++++|.|.++|.+|...|+.+++-+.-...++ .-+.|||..+..
T Consensus 288 fsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~ 349 (382)
T PLN02317 288 FSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS 349 (382)
T ss_pred EEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC
Confidence 33367999999999999999999999998776555 457888887653
No 128
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=53.24 E-value=14 Score=43.05 Aligned_cols=27 Identities=41% Similarity=0.325 Sum_probs=14.0
Q ss_pred cchhhhhhhhHHHHHHHHHhhhHHHHHHH
Q 037785 9 QGQCSQTIHNLQSYQEQLFLHHQQQQQQQ 37 (365)
Q Consensus 9 ~~~~~~~~~~~~~~q~~~~~~~~q~qq~~ 37 (365)
|.+.++.|++||++|-. +|.||.|||+
T Consensus 1856 q~~qqq~iq~lq~~q~l--qqqqq~~qq~ 1882 (2131)
T KOG4369|consen 1856 QQQQQQQIQHLQQQQAL--QQQQQRIQQF 1882 (2131)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhHHHHH
Confidence 44556677777665543 2324444444
No 129
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.57 E-value=45 Score=33.10 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=12.4
Q ss_pred CCCCCCCCCC---CCCCCCCCCC
Q 037785 83 HFGPNPVREH---DPFVLPPPPP 102 (365)
Q Consensus 83 h~~~~p~~~~---~pf~~~~~~p 102 (365)
++..|||.+. +||-.|...+
T Consensus 3 ~~d~NPFadp~~~NPF~dp~~~q 25 (313)
T KOG3088|consen 3 RYDPNPFAEPELVNPFADPAVVQ 25 (313)
T ss_pred CCCCCCCCCcccCCCCCCccccC
Confidence 3445888763 3777776554
No 130
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=50.59 E-value=56 Score=30.08 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=46.4
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe--eCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHH
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT--LGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEE 331 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT--~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~e 331 (365)
.+.|.+...||||++-++...|..+|+.+.+-.-.+ ..+.--.-|++...-.-.. ...+..|++
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa--------------~~~i~~l~~ 157 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA--------------NLSISALRD 157 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC--------------cCcHHHHHH
Confidence 456789999999999999999999998776644433 2233333333333222221 234677888
Q ss_pred HHHHHHHh
Q 037785 332 ALKAVMEK 339 (365)
Q Consensus 332 AL~~vl~k 339 (365)
++.++-+.
T Consensus 158 ~f~al~~~ 165 (176)
T COG2716 158 AFEALCDE 165 (176)
T ss_pred HHHHHHHh
Confidence 88776544
No 131
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=49.26 E-value=9.4 Score=34.38 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 037785 181 AERRRRERINNHLAKLRSLLPST 203 (365)
Q Consensus 181 ~ER~RR~~in~~~~~LrslvP~~ 203 (365)
.||.|-.++|+.+.-|+.|+|+.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 58888899999999999999976
No 132
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=48.86 E-value=41 Score=35.43 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=37.8
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeE-E-EEEEEEecC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRA-K-NVLFITADD 304 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv-~-~vf~V~~~~ 304 (365)
++-.+++|.|.++|+.|.+.|+.+++-+.-...++. - +.|+|..+.
T Consensus 36 FsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 36 FSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred EECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 555789999999999999999999999987765554 3 678888763
No 133
>PRK14646 hypothetical protein; Provisional
Probab=47.16 E-value=98 Score=27.65 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 269 PDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 269 s~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
.-+-.+++++|++++..++..-++..+-.++|...++..+ .-..++.+..+|..+|+..
T Consensus 11 ~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gV-------------tldDC~~vSr~is~~LD~~ 69 (155)
T PRK14646 11 ILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDI-------------SLDDCALFNTPASEEIENS 69 (155)
T ss_pred HHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCc-------------cHHHHHHHHHHHHHHhCcC
Confidence 3455678899999999999987766555566654433222 2345788999999998754
No 134
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=43.60 E-value=28 Score=36.80 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=32.9
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG 291 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g 291 (365)
+++|.|.||-|+..+|+..|-..++++...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 467999999999999999999999999999997764
No 135
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.28 E-value=52 Score=23.83 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=22.2
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEEe
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEITT 289 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~IsT 289 (365)
+++|.+.+++++|.+.|+++.-...++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 578999999999999999886554444
No 136
>PRK14637 hypothetical protein; Provisional
Probab=42.32 E-value=1.1e+02 Score=27.26 Aligned_cols=62 Identities=6% Similarity=0.032 Sum_probs=43.6
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHh
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEK 339 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k 339 (365)
+--|+...+-.+++++|++++..++..-++..+-.++|...+| + +-..++.+..+|..+|+.
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V-------------~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--V-------------GLDDCARVHRILVPRLEA 67 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--C-------------CHHHHHHHHHHHHHHhcc
Confidence 4457888888899999999999999887765444445543222 2 234577788888777764
No 137
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=41.89 E-value=42 Score=34.78 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=31.6
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCC
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGG 292 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~gg 292 (365)
+++|.|+||-|+.-+++..|-.-++++-..+|-..|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~~ 38 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCCe
Confidence 4679999999999999999999999998888844443
No 138
>PRK14645 hypothetical protein; Provisional
Probab=41.79 E-value=1.2e+02 Score=27.17 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 268 LPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 268 Ls~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
-.-+-.+++++|++++..++..-++..+-.++|...++..+ .-..++.+.++|..+|+..
T Consensus 12 ~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v-------------~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 12 QQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPV-------------TVEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCc-------------CHHHHHHHHHHHHHHhccc
Confidence 33445588899999999999877654444455543333222 2355788999999999754
No 139
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.98 E-value=1.1e+02 Score=24.05 Aligned_cols=45 Identities=4% Similarity=0.028 Sum_probs=27.9
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC-CeEEEEEEEEecC
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG-GRAKNVLFITADD 304 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g-grv~~vf~V~~~~ 304 (365)
.+.-+++||-|.+++++|- +-.|........+ +...-.+.++..+
T Consensus 5 ~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 5 AVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred EEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 4666899999999999999 5555544443222 3333344444443
No 140
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.37 E-value=1.7e+02 Score=22.57 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=21.2
Q ss_pred eCCCCCcHHHHHHHHHhCCCeeeee
Q 037785 261 CEDRSDLLPDLIKSLKALRLRTLKA 285 (365)
Q Consensus 261 C~~RpGLLs~Il~aLeeLgL~Vv~A 285 (365)
..+.+|++.+|+.+|.+.|+.|---
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 3567999999999999999877655
No 141
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=40.12 E-value=81 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEE
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKN 296 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~ 296 (365)
.|++.-++++|-|..++.+|.+.|+.+---+|.-.+++-+-
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 36788899999999999999999999988888777765433
No 142
>PRK08526 threonine dehydratase; Provisional
Probab=39.39 E-value=1.8e+02 Score=29.80 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=32.8
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR 293 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr 293 (365)
.+++.+.-.|+||-|.+++..+-+.+.+|+..+......+
T Consensus 326 ~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~ 365 (403)
T PRK08526 326 KMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTK 365 (403)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCC
Confidence 4456788899999999999999999999998887554433
No 143
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=39.36 E-value=91 Score=28.83 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=37.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCC
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQ 305 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~ 305 (365)
++|..++++|.|.+|.-.+.++|-.|+.+.--.-++--.-.+|.+....
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi 53 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI 53 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC
Confidence 5678899999999999999999999999885544443344455555553
No 144
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.71 E-value=2.7e+02 Score=28.35 Aligned_cols=10 Identities=20% Similarity=0.292 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 037785 221 ELKRQTSLIA 230 (365)
Q Consensus 221 ~L~~~v~~L~ 230 (365)
.|++++..|+
T Consensus 257 tLEqq~~~L~ 266 (365)
T KOG2391|consen 257 TLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 145
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.16 E-value=1.1e+02 Score=21.76 Aligned_cols=26 Identities=4% Similarity=-0.040 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEE
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEIT 288 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~Is 288 (365)
++++++.+++.+|.+.|+.+.-...+
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEec
Confidence 57899999999999999988655443
No 146
>PRK14634 hypothetical protein; Provisional
Probab=36.38 E-value=1.4e+02 Score=26.61 Aligned_cols=57 Identities=5% Similarity=-0.041 Sum_probs=39.3
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+-.+++++|++++..++..-++..+--++|...+|..+ +-..+..+..+|..+|+..
T Consensus 13 ~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v-------------~lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 13 ASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDV-------------SLDDCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcc-------------cHHHHHHHHHHHHHHhccc
Confidence 33467899999999999887655444555654444322 2355788999999999854
No 147
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=35.92 E-value=1.9e+02 Score=21.89 Aligned_cols=51 Identities=12% Similarity=0.343 Sum_probs=37.2
Q ss_pred eEEEEeeeeCCCC-CcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecC
Q 037785 253 FVIKASLCCEDRS-DLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADD 304 (365)
Q Consensus 253 ~~V~v~I~C~~Rp-GLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~ 304 (365)
..+++.+..+... .+++++.+.+ ...+.|+.++|..++|..+-.+++.-..
T Consensus 3 ~l~~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g 54 (76)
T PF09383_consen 3 RLVRLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPG 54 (76)
T ss_dssp EEEEEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred eEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEEC
Confidence 4566777766543 4455555443 4668999999999999999999998854
No 148
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=35.61 E-value=32 Score=32.82 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=8.6
Q ss_pred hhhhhhhHHHHHHHHHhh
Q 037785 12 CSQTIHNLQSYQEQLFLH 29 (365)
Q Consensus 12 ~~~~~~~~~~~q~~~~~~ 29 (365)
+++-=++|...|.|+|.|
T Consensus 7 yQqHQqQL~~MQkQQLaq 24 (230)
T PF06752_consen 7 YQQHQQQLVLMQKQQLAQ 24 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334455555555555
No 149
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.76 E-value=1.4e+02 Score=21.17 Aligned_cols=26 Identities=4% Similarity=0.042 Sum_probs=21.1
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEE
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEIT 288 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~Is 288 (365)
+.++++.+++++|.+.|+.+.-...+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEec
Confidence 56899999999999999888554443
No 150
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=34.44 E-value=2.2e+02 Score=28.88 Aligned_cols=90 Identities=22% Similarity=0.193 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCC-CCccc-----hhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeccCCCceEEEEeeeeCC
Q 037785 190 NNHLAKLRSLLPS-TTKTD-----KASLLAEVIQHVKELKRQTSLIAETSPVPTEMDELTVDASDEDGKFVIKASLCCED 263 (365)
Q Consensus 190 n~~~~~LrslvP~-~~k~d-----K~siL~~ai~YIk~L~~~v~~L~~~~~~p~~~~eV~V~~~~~dg~~~V~v~I~C~~ 263 (365)
=.+|..|++.-|. .+-.| ++.+..+..+|++.|++.+++|++..... .++.-++-..+.|.
T Consensus 178 ~~~l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~~------------~~~~RIl~tG~~~~- 244 (380)
T TIGR02263 178 IQALYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEAPI------------KDNCRVIICGMFCE- 244 (380)
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhccccC------------CCCCEEEEECcCCC-
Confidence 3455677776665 33333 23334567899999999999987643211 12222221222232
Q ss_pred CCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEE
Q 037785 264 RSDLLPDLIKSLKALRLRTLKAEITTLGGRAK 295 (365)
Q Consensus 264 RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~ 295 (365)
....++++.+++.|..|+- .-.|.|.|..
T Consensus 245 --~~~~k~~~~iE~~G~~VV~-dd~c~g~r~~ 273 (380)
T TIGR02263 245 --QPPLNLIKSIELSGCYIVD-DDFIIVHRFE 273 (380)
T ss_pred --CchHHHHHHHHHCCCEEEE-ecCCccchhh
Confidence 2247999999999999994 4466666654
No 151
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=33.51 E-value=1.6e+02 Score=21.14 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=21.4
Q ss_pred eCCCCCcHHHHHHHHHhCCCeeeee
Q 037785 261 CEDRSDLLPDLIKSLKALRLRTLKA 285 (365)
Q Consensus 261 C~~RpGLLs~Il~aLeeLgL~Vv~A 285 (365)
..+.+|.+.+++++|.+.|+.|.-.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999999988643
No 152
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.41 E-value=96 Score=22.89 Aligned_cols=20 Identities=5% Similarity=-0.054 Sum_probs=17.0
Q ss_pred CCCCcHHHHHHHHHhCCCee
Q 037785 263 DRSDLLPDLIKSLKALRLRT 282 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~V 282 (365)
..+|++.+++++|.+.++.+
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred cCccHHHHHHHHHhcCCceE
Confidence 56899999999999877655
No 153
>PRK14647 hypothetical protein; Provisional
Probab=32.32 E-value=1.8e+02 Score=26.00 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+-.+++++|++++..++..-++..+-.++|...+| . .-..++.+..+|..+|+..
T Consensus 14 i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~g--v-------------slddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 14 AEQVLSSLGLELVELEYKREGREMVLRLFIDKEGG--V-------------NLDDCAEVSRELSEILDVE 68 (159)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCC--C-------------CHHHHHHHHHHHHHHHccc
Confidence 34468899999999999987765444445543322 2 2355788999999999854
No 154
>PRK14639 hypothetical protein; Provisional
Probab=32.26 E-value=1.6e+02 Score=25.82 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+-.+++++|++++..++..-++..+-.++|...+| . +-..++.+..+|..+|+..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v-------------~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--V-------------NLDDCERLSELLSPIFDVE 57 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--C-------------CHHHHHHHHHHHHHHhccc
Confidence 44678999999999999987776555566643332 2 2355788999999999865
No 155
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=31.59 E-value=1.6e+02 Score=19.77 Aligned_cols=25 Identities=4% Similarity=0.048 Sum_probs=20.8
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEE
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEI 287 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~I 287 (365)
+.+|.+.+++++|.+.++.+.-...
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 3689999999999999998865543
No 156
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=30.79 E-value=2.2e+02 Score=21.27 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=37.7
Q ss_pred CCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhcc
Q 037785 262 EDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKTS 341 (365)
Q Consensus 262 ~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~~ 341 (365)
.+.+|++.+++++|.+.++.+.-...++.+. -.+|.+...+. ...+..|++++-.-+++..
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~--~isf~v~~~d~-----------------~~~~~~l~~~~~~~~~~~~ 72 (80)
T cd04921 12 VGVPGIAARIFSALARAGINVILISQASSEH--SISFVVDESDA-----------------DKALEALEEEFALEIKAGL 72 (80)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEecCCcc--eEEEEEeHHHH-----------------HHHHHHHHHHHHhhhhhCc
Confidence 3568999999999999999886555443221 22233333221 2335667777766666553
No 157
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=30.33 E-value=1.9e+02 Score=25.60 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=38.8
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhcc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKTS 341 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~~ 341 (365)
+-.++.++|++++..++..-++..+-.++|...+| . +-..++.+..+|..+|+...
T Consensus 13 ~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~g--v-------------~iddc~~~Sr~is~~LD~~d 68 (154)
T PRK00092 13 IEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGG--I-------------DLDDCEEVSRQISAVLDVED 68 (154)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCC--C-------------CHHHHHHHHHHHHHHhcccc
Confidence 34578889999999999887665544455543322 2 23568889999999997543
No 158
>PRK06545 prephenate dehydrogenase; Validated
Probab=29.93 E-value=2.9e+02 Score=27.56 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=36.8
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecC
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADD 304 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~ 304 (365)
+.|.-+|+||.+.+|+..|-+.|+.|.+..|.-.-+...-++.+.-..
T Consensus 293 ~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~ 340 (359)
T PRK06545 293 LYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN 340 (359)
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC
Confidence 345668999999999999999999999999865555555555554443
No 159
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=29.76 E-value=3e+02 Score=33.53 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=25.6
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeee
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLK 284 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~ 284 (365)
|.|.|+|.|.|+..|..+|...|+.|..
T Consensus 20 I~IV~dDmPFLVDSV~~~L~r~gl~I~~ 47 (1528)
T PF05088_consen 20 IEIVTDDMPFLVDSVRMELNRQGLTIHL 47 (1528)
T ss_pred EEEEcCCCCcHHHHHHHHHHhCCCceEE
Confidence 5699999999999999999999998765
No 160
>PRK14636 hypothetical protein; Provisional
Probab=29.49 E-value=2.6e+02 Score=25.54 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+-.+++++|++++..++..-++..+-.++|....++.+ .-..++.+..+|..+|+..
T Consensus 11 vep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV-------------~lDDC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 11 IEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQL-------------VIEDCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCc-------------CHHHHHHHHHHHHHHhccC
Confidence 34468899999999999877655444455543332222 2355788999999999854
No 161
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=29.31 E-value=69 Score=23.97 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=24.6
Q ss_pred EEeeeeC----CCCCcHHHHHHHHHhCCCeeeeeE
Q 037785 256 KASLCCE----DRSDLLPDLIKSLKALRLRTLKAE 286 (365)
Q Consensus 256 ~v~I~C~----~RpGLLs~Il~aLeeLgL~Vv~A~ 286 (365)
.|+|.+. +.+|++.+++.+|.+.|+.|.-.+
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3455555 589999999999999999997766
No 162
>PRK00907 hypothetical protein; Provisional
Probab=29.24 E-value=2.5e+02 Score=23.09 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=40.6
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEE----EeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEI----TTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEA 332 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~I----sT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eA 332 (365)
++|-...++++...|+++++.+.=+.-...+ |.-|..+--++.|.+.+ ...+++|-++
T Consensus 20 iKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats------------------~eQld~iY~~ 81 (92)
T PRK00907 20 LSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES------------------REQYDAAHQA 81 (92)
T ss_pred EEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC------------------HHHHHHHHHH
Confidence 4578889999999999999987643333333 55555555555554443 3557778888
Q ss_pred HHH
Q 037785 333 LKA 335 (365)
Q Consensus 333 L~~ 335 (365)
|.+
T Consensus 82 L~~ 84 (92)
T PRK00907 82 LRD 84 (92)
T ss_pred Hhh
Confidence 764
No 163
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.81 E-value=1.4e+02 Score=33.81 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=10.2
Q ss_pred chhhhhhhhHHHHHHHHHh
Q 037785 10 GQCSQTIHNLQSYQEQLFL 28 (365)
Q Consensus 10 ~~~~~~~~~~~~~q~~~~~ 28 (365)
+.+-+++-..|..|..|..
T Consensus 481 kk~~ke~ta~qe~qael~k 499 (1102)
T KOG1924|consen 481 KKFDKELTARQEAQAELQK 499 (1102)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3444455566666666433
No 164
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.50 E-value=2e+02 Score=21.43 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHHHHHHHHHh
Q 037785 181 AERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAE 231 (365)
Q Consensus 181 ~ER~RR~~in~~~~~LrslvP~~~k~dK~siL~~ai~YIk~L~~~v~~L~~ 231 (365)
.=|.-|=...+++..+..++ ...=.++|.+||+++-..++.+..
T Consensus 15 ~lR~~RHD~~NhLqvI~gll-------qlg~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLL-------QLGKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44667777888899998885 223367899999999998887653
No 165
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=28.48 E-value=1.3e+02 Score=24.49 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=34.9
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFI 300 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V 300 (365)
+.+....+|+.|-+|++..+.-|+.|...++++. ++++---|.|
T Consensus 6 ldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 6 LDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred EeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4567789999999999999999999999999887 4444333333
No 166
>PRK14630 hypothetical protein; Provisional
Probab=28.09 E-value=2.6e+02 Score=24.61 Aligned_cols=57 Identities=7% Similarity=0.090 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 269 PDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 269 s~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
.-+-.+++++|++++..++..-++..+-.++|...+| . .-..++.+..+|...|+..
T Consensus 12 ~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V-------------~idDC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 12 NLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--F-------------GVDTLCDLHKMILLILEAV 68 (143)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--C-------------CHHHHHHHHHHHHHHhccc
Confidence 3444578999999999998876654444455543332 2 1345777888887777654
No 167
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=27.86 E-value=1.4e+02 Score=22.26 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHhCCCeeeeeEEEe
Q 037785 264 RSDLLPDLIKSLKALRLRTLKAEITT 289 (365)
Q Consensus 264 RpGLLs~Il~aLeeLgL~Vv~A~IsT 289 (365)
++|++.+++++|.+.|+++.-...++
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecC
Confidence 67899999999999999886544443
No 168
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.62 E-value=2e+02 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhCCCe
Q 037785 263 DRSDLLPDLIKSLKALRLR 281 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~ 281 (365)
+++|++.+++++|.+.++.
T Consensus 13 ~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 13 ETAGVEKRIFDALEDINVR 31 (64)
T ss_pred CCcCHHHHHHHHHHhCCeE
Confidence 5789999999999764433
No 169
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=27.40 E-value=1.2e+02 Score=23.96 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=24.8
Q ss_pred eeeeCC-CCCcHHHHHHHHHhCCCeeeeeE
Q 037785 258 SLCCED-RSDLLPDLIKSLKALRLRTLKAE 286 (365)
Q Consensus 258 ~I~C~~-RpGLLs~Il~aLeeLgL~Vv~A~ 286 (365)
.+-..+ +.|.+.+|..+|-++|+.|.+-+
T Consensus 3 tvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 3 TLLGRPLTAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred EEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 456777 89999999999999999887754
No 170
>PRK14640 hypothetical protein; Provisional
Probab=26.66 E-value=2.3e+02 Score=25.14 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+-..++++|++++..++..-++..+-.++|...+| + +-..++.+..+|..+|+..
T Consensus 12 i~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v-------------~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 12 LEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--V-------------SVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--C-------------CHHHHHHHHHHHHHHhccc
Confidence 44478899999999999876655444555543333 2 2355788999999998754
No 171
>PRK14638 hypothetical protein; Provisional
Probab=25.69 E-value=2.9e+02 Score=24.50 Aligned_cols=56 Identities=4% Similarity=-0.037 Sum_probs=38.5
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+-.+++++|++++..++..-++..+-.++|...+|. + +-..++.+..+|..+|+..
T Consensus 14 ~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~-v-------------~lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 14 AERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGY-V-------------SVRDCELFSREIERFLDRE 69 (150)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCC-c-------------CHHHHHHHHHHHHHHhccc
Confidence 344788999999999999876554444555433332 2 2355788999999998754
No 172
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=25.67 E-value=2.6e+02 Score=29.39 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=37.2
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADD 304 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~ 304 (365)
+.-.+++|.|.+||++|.+.|+.+++-+.-...+. --+.|+|..+.
T Consensus 21 FsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 21 FSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 45578899999999999999999999887665433 45778888764
No 173
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=24.42 E-value=1.5e+02 Score=25.90 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=28.7
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCe--eeeeEEEeeCCeEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLR--TLKAEITTLGGRAKNVLF 299 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~--Vv~A~IsT~ggrv~~vf~ 299 (365)
+-|..+|+||-|+.|+++|-..++. -+-|-++-- ..++-++.
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r 115 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVR 115 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEE
Confidence 3577899999999999999997754 444444433 44444443
No 174
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=24.40 E-value=3.2e+02 Score=24.89 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=36.0
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee---CCeEEEEEEEEec
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL---GGRAKNVLFITAD 303 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~---ggrv~~vf~V~~~ 303 (365)
.|.+.|.-.|+||-|.++++-|.+.|..|++.--+.- ++|+---+.++.+
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 4555677789999999999999999988777554433 6666444444443
No 175
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.90 E-value=1.3e+02 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=33.0
Q ss_pred EEEeeeeCCCCCc-HHHHHHHHHhCCCeeeeeEEEeeCCe
Q 037785 255 IKASLCCEDRSDL-LPDLIKSLKALRLRTLKAEITTLGGR 293 (365)
Q Consensus 255 V~v~I~C~~RpGL-Ls~Il~aLeeLgL~Vv~A~IsT~ggr 293 (365)
+.+.++|.+..|+ +...+.+++ .|.+++.+.+.-+|++
T Consensus 190 i~l~~H~Hn~~GlA~An~laAi~-aG~~~iD~s~~GlG~~ 228 (268)
T cd07940 190 VPISVHCHNDLGLAVANSLAAVE-AGARQVECTINGIGER 228 (268)
T ss_pred eeEEEEecCCcchHHHHHHHHHH-hCCCEEEEEeeccccc
Confidence 5678999999998 888888986 5999999999999853
No 176
>PRK14631 hypothetical protein; Provisional
Probab=23.83 E-value=3.4e+02 Score=24.74 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCC---CCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDS---SCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+--+++++|++++..++..-++..+--++|....... .-..+|.++.++.-.-..++.+.++|..+|+..
T Consensus 14 i~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 14 IAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVH 86 (174)
T ss_pred HHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhccc
Confidence 3346889999999999998765544445554321000 000000000001123456889999999999743
No 177
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=23.48 E-value=88 Score=20.88 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037785 181 AERRRRERINNHLAKLRS 198 (365)
Q Consensus 181 ~ER~RR~~in~~~~~Lrs 198 (365)
-=|+||+.+..++.-||+
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347889999999998885
No 178
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.44 E-value=1.6e+02 Score=20.53 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeE
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAE 286 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~ 286 (365)
+.++++.+++.+|.+.++.+.-..
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 468999999999999999886654
No 179
>PRK14632 hypothetical protein; Provisional
Probab=23.29 E-value=2.7e+02 Score=25.29 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 272 IKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 272 l~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
-.+++++|++++..++..-+..++ .++|...+| + +-..++.+..+|..+|+..
T Consensus 15 ~pv~~~~G~eLvdve~~~~~~~~l-rV~ID~~~G--V-------------~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 15 GPFLASLGLELWGIELSYGGRTVV-RLFVDGPEG--V-------------TIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHCCCEEEEEEEEeCCCcEE-EEEEECCCC--C-------------CHHHHHHHHHHHHHHhccc
Confidence 346789999999999886444344 344432222 2 2355788999999999854
No 180
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=22.56 E-value=28 Score=38.37 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=45.5
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC-----CccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKELKRQTSLIAET 232 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-----~k~dK~siL~~ai~YIk~L~~~v~~L~~~ 232 (365)
.+..|+.++||||-.+-++|..|-.|.|.. .+..++|||. +.|+.+++.-+.+.++
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~ 847 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEK 847 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhh
Confidence 346788899999999999999999999843 5678999999 7788888777666553
No 181
>PRK08818 prephenate dehydrogenase; Provisional
Probab=21.96 E-value=2.2e+02 Score=29.05 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=34.9
Q ss_pred eeeC-CCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCC
Q 037785 259 LCCE-DRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQ 305 (365)
Q Consensus 259 I~C~-~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~ 305 (365)
+.-+ |+||.|.+|+..|...|+.+.+-++...... .+.|+|.-...
T Consensus 300 ~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~-~y~f~i~~~~~ 346 (370)
T PRK08818 300 VYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAG-ELHFRIGFEPG 346 (370)
T ss_pred EECCCCCCChHHHHHHHHHHcCcccceEEEecccCc-eEEEEEEEecc
Confidence 3444 9999999999999999999999998433333 33488876653
No 182
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=21.50 E-value=1.9e+02 Score=20.14 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=21.0
Q ss_pred CCCCCcHHHHHHHHHhCCCeeeeeE
Q 037785 262 EDRSDLLPDLIKSLKALRLRTLKAE 286 (365)
Q Consensus 262 ~~RpGLLs~Il~aLeeLgL~Vv~A~ 286 (365)
.+.++++.+++.+|.+.++.+.-..
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 3568999999999999999886654
No 183
>PRK14633 hypothetical protein; Provisional
Probab=21.16 E-value=3.5e+02 Score=23.93 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 270 DLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 270 ~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
-+-.+++++|++++..++..-++.++-+| |...+| + +-..++.+..+|..+|+..
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~G--v-------------~lddC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENG--V-------------SVDDCQIVSKEISAVFDVE 63 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCC--C-------------CHHHHHHHHHHHHHHhccC
Confidence 34557899999999999987776555433 332222 2 2355888999999999854
No 184
>PRK06349 homoserine dehydrogenase; Provisional
Probab=20.85 E-value=2.3e+02 Score=29.16 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=32.1
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFIT 301 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~ 301 (365)
+++...+++|.|.+|...|.+.++.+.+..-....+....+++++
T Consensus 351 lRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT 395 (426)
T PRK06349 351 LRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVT 395 (426)
T ss_pred EEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEE
Confidence 567788999999999999999999887655443333333444444
No 185
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.69 E-value=3e+02 Score=24.74 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHH-HHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 270 DLIK-SLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 270 ~Il~-aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
++++ +++.||++++..++...|...+--+++....+ . +-..++.+.+++-.+|+..
T Consensus 12 ~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~g~--v-------------~lddC~~vSr~is~~LD~e 68 (153)
T COG0779 12 ELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKEGG--V-------------TLDDCADVSRAISALLDVE 68 (153)
T ss_pred HHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCCCC--C-------------CHHHHHHHHHHHHHHhccC
Confidence 4443 78889999999999999854333344444422 1 1355888999999999843
No 186
>PRK14643 hypothetical protein; Provisional
Probab=20.21 E-value=4.3e+02 Score=23.85 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEe--cCCCCCCCcccchhhhhhhhhhhHHHHHHHHHHHHHhc
Q 037785 271 LIKSLKALRLRTLKAEITTLGGRAKNVLFITA--DDQDSSCSSAAGEQHQQQQQQYSISSIEEALKAVMEKT 340 (365)
Q Consensus 271 Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~vl~k~ 340 (365)
+-.+++++|++++..++..-++..+--++|.. ..++.+ .-..++.+.++|..+|+..
T Consensus 15 ~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggv-------------tldDC~~vSr~is~~LD~~ 73 (164)
T PRK14643 15 VNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPL-------------DFDILIKANDLVSNKIDQF 73 (164)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCc-------------CHHHHHHHHHHHHHHhCcc
Confidence 34468899999999999988776555666653 111112 2355788889999998854
Done!