Query 037785
Match_columns 365
No_of_seqs 308 out of 1263
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 9.5E-16 3.2E-20 121.7 5.6 60 173-232 5-65 (82)
2 4h10_B Circadian locomoter out 99.6 3.1E-15 1E-19 115.6 5.4 61 170-230 4-65 (71)
3 4ati_A MITF, microphthalmia-as 99.5 3.7E-14 1.3E-18 119.8 7.4 64 169-232 22-89 (118)
4 4h10_A ARYL hydrocarbon recept 99.5 1.1E-14 3.7E-19 113.2 2.4 56 170-225 5-64 (73)
5 1an4_A Protein (upstream stimu 99.5 1.5E-14 5.2E-19 109.6 2.8 53 174-226 5-63 (65)
6 1hlo_A Protein (transcription 99.4 8.2E-14 2.8E-18 109.9 5.9 59 174-232 12-72 (80)
7 1a0a_A BHLH, protein (phosphat 99.4 1.5E-14 5.1E-19 109.4 1.3 52 175-226 3-61 (63)
8 1nkp_B MAX protein, MYC proto- 99.4 1.2E-13 4E-18 109.6 5.8 57 175-231 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.4E-13 8.3E-18 109.2 6.4 57 174-230 6-65 (88)
10 3u5v_A Protein MAX, transcript 99.3 7E-13 2.4E-17 103.8 4.4 57 174-230 5-65 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 2.8E-12 9.6E-17 101.3 6.6 57 175-231 2-61 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.0 1.8E-10 6.2E-15 88.2 5.0 53 174-226 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 2.4E-10 8.3E-15 85.4 5.1 53 175-227 3-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 4.6E-10 1.6E-14 110.0 5.6 56 170-225 8-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.4E-09 4.8E-14 107.8 4.6 58 169-226 8-69 (387)
16 2lfh_A DNA-binding protein inh 98.5 1.2E-08 4E-13 77.7 0.6 44 181-224 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.5 2.5E-07 8.4E-12 73.1 6.1 46 186-231 4-53 (83)
18 4aya_A DNA-binding protein inh 98.0 1E-05 3.5E-10 65.7 6.2 49 181-229 32-83 (97)
19 1zpv_A ACT domain protein; str 97.2 0.0041 1.4E-07 48.1 11.4 69 254-340 5-73 (91)
20 1u8s_A Glycine cleavage system 97.0 0.0037 1.3E-07 55.4 10.0 66 256-340 8-73 (192)
21 2nyi_A Unknown protein; protei 96.8 0.0047 1.6E-07 55.3 8.9 49 255-303 6-54 (195)
22 2nyi_A Unknown protein; protei 96.8 0.0025 8.5E-08 57.1 6.9 71 256-341 95-167 (195)
23 2ko1_A CTR148A, GTP pyrophosph 96.6 0.0088 3E-07 45.5 8.5 50 253-302 4-53 (88)
24 1u8s_A Glycine cleavage system 96.6 0.0096 3.3E-07 52.7 9.3 74 254-341 93-170 (192)
25 2jhe_A Transcription regulator 93.8 0.18 6.1E-06 42.7 7.7 35 256-290 2-36 (190)
26 3p96_A Phosphoserine phosphata 93.0 0.33 1.1E-05 47.5 9.2 69 256-341 14-82 (415)
27 3o1l_A Formyltetrahydrofolate 92.7 0.71 2.4E-05 44.3 10.7 69 256-341 24-94 (302)
28 3n0v_A Formyltetrahydrofolate 92.0 0.57 2E-05 44.5 9.0 67 257-341 11-79 (286)
29 3obi_A Formyltetrahydrofolate 91.4 0.99 3.4E-05 42.9 10.0 68 257-341 9-78 (288)
30 3lou_A Formyltetrahydrofolate 90.4 1.2 4.1E-05 42.4 9.5 70 257-341 13-84 (292)
31 2f1f_A Acetolactate synthase i 90.3 0.66 2.3E-05 40.6 7.1 62 257-337 6-69 (164)
32 1y7p_A Hypothetical protein AF 89.0 0.64 2.2E-05 42.8 6.1 38 254-291 4-41 (223)
33 2pc6_A Probable acetolactate s 88.7 0.91 3.1E-05 39.8 6.8 62 257-337 7-70 (165)
34 3nrb_A Formyltetrahydrofolate 86.6 2.2 7.4E-05 40.5 8.5 39 257-295 10-50 (287)
35 3iot_A Maltose-binding protein 84.2 0.19 6.5E-06 49.3 -0.1 12 14-25 382-393 (449)
36 2fgc_A Acetolactate synthase, 80.3 2.4 8.1E-05 38.2 5.6 45 257-301 32-78 (193)
37 2qmx_A Prephenate dehydratase; 76.8 8.5 0.00029 36.4 8.5 47 259-305 205-252 (283)
38 3luy_A Probable chorismate mut 73.8 27 0.00091 33.7 11.3 42 263-304 217-259 (329)
39 2qmw_A PDT, prephenate dehydra 72.8 13 0.00046 34.8 8.7 45 259-303 191-239 (267)
40 3mwb_A Prephenate dehydratase; 69.4 17 0.00056 34.9 8.7 46 259-304 206-253 (313)
41 2f06_A Conserved hypothetical 69.4 11 0.00038 30.9 6.7 41 258-298 76-116 (144)
42 2f06_A Conserved hypothetical 56.1 26 0.00088 28.6 6.5 34 256-289 8-41 (144)
43 1phz_A Protein (phenylalanine 46.8 30 0.001 34.6 6.3 45 259-303 39-84 (429)
44 1p3q_Q VPS9P, vacuolar protein 33.6 52 0.0018 23.5 4.1 26 180-205 3-28 (54)
45 2wt7_A Proto-oncogene protein 31.6 86 0.0029 22.6 5.2 16 183-198 2-17 (63)
46 1xkm_B Distinctin chain B; por 31.4 49 0.0017 19.7 3.0 20 209-228 3-22 (26)
47 2dt9_A Aspartokinase; protein- 30.5 60 0.0021 27.3 4.9 25 262-286 25-49 (167)
48 2dtj_A Aspartokinase; protein- 30.5 1.2E+02 0.0041 25.8 6.9 30 261-290 23-52 (178)
49 2re1_A Aspartokinase, alpha an 27.7 1.3E+02 0.0046 25.1 6.6 29 257-285 106-137 (167)
50 2re1_A Aspartokinase, alpha an 26.9 1.1E+02 0.0039 25.6 6.0 31 257-287 28-59 (167)
51 3he4_B Synzip5; heterodimeric 25.5 68 0.0023 21.4 3.2 19 212-230 5-23 (46)
52 1pd7_B MAD1; PAH2, SIN3, eukar 23.8 87 0.003 19.1 3.2 21 206-226 2-22 (26)
53 1sc6_A PGDH, D-3-phosphoglycer 21.5 2E+02 0.0069 28.0 7.3 42 259-300 336-377 (404)
54 3fx7_A Putative uncharacterize 20.6 1.8E+02 0.0061 23.0 5.4 44 180-232 42-85 (94)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=9.5e-16 Score=121.71 Aligned_cols=60 Identities=23% Similarity=0.438 Sum_probs=55.6
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCC-CccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 037785 173 AASKSHSEAERRRRERINNHLAKLRSLLPST-TKTDKASLLAEVIQHVKELKRQTSLIAET 232 (365)
Q Consensus 173 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dK~siL~~ai~YIk~L~~~v~~L~~~ 232 (365)
..+.+|+.+||+||++||+.|..|++|||+. .|+||++||.+||+||++|+.+++.|.+.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556799999999999999999999999987 89999999999999999999999998754
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=115.58 Aligned_cols=61 Identities=30% Similarity=0.487 Sum_probs=53.9
Q ss_pred HhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC-CccchhhhHHHHHHHHHHHHHHHHHHH
Q 037785 170 KALAASKSHSEAERRRRERINNHLAKLRSLLPST-TKTDKASLLAEVIQHVKELKRQTSLIA 230 (365)
Q Consensus 170 k~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dK~siL~~ai~YIk~L~~~v~~L~ 230 (365)
|....+.+|+.+||+||++||+.|.+|++|||.. .|+||++||.+||+||+.|+..+.=|+
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344567799999999999999999999999975 699999999999999999999886553
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.49 E-value=3.7e-14 Score=119.85 Aligned_cols=64 Identities=27% Similarity=0.483 Sum_probs=51.4
Q ss_pred HHhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCCC----ccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 037785 169 AKALAASKSHSEAERRRRERINNHLAKLRSLLPSTT----KTDKASLLAEVIQHVKELKRQTSLIAET 232 (365)
Q Consensus 169 ~k~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~~----k~dK~siL~~ai~YIk~L~~~v~~L~~~ 232 (365)
++....+.+|+.+||+||++||++|..|++|||.+. |++|++||.+||+||++|+.+++.|.+.
T Consensus 22 ~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788999999999999999999999999763 6789999999999999999999999854
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=113.21 Aligned_cols=56 Identities=36% Similarity=0.625 Sum_probs=49.9
Q ss_pred HhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC----CccchhhhHHHHHHHHHHHHHH
Q 037785 170 KALAASKSHSEAERRRRERINNHLAKLRSLLPST----TKTDKASLLAEVIQHVKELKRQ 225 (365)
Q Consensus 170 k~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~L~~~ 225 (365)
|...++.+|+.+||+||++||+.|.+|++|||.+ .|+||++||..||+||+.|+.-
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 3345667899999999999999999999999965 7999999999999999999743
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=1.5e-14 Score=109.65 Aligned_cols=53 Identities=30% Similarity=0.629 Sum_probs=48.8
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCCC------ccchhhhHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPSTT------KTDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~~------k~dK~siL~~ai~YIk~L~~~v 226 (365)
.+.+|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++|+++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999874 7899999999999999999764
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=8.2e-14 Score=109.87 Aligned_cols=59 Identities=24% Similarity=0.463 Sum_probs=54.6
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC--CccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST--TKTDKASLLAEVIQHVKELKRQTSLIAET 232 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~dK~siL~~ai~YIk~L~~~v~~L~~~ 232 (365)
.+..|+..||+||..||+.|..|+++||.. .|++|++||..||+||+.|+.++++|...
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999999999999976 69999999999999999999999998753
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.44 E-value=1.5e-14 Score=109.38 Aligned_cols=52 Identities=29% Similarity=0.488 Sum_probs=47.3
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhcCCCC-------CccchhhhHHHHHHHHHHHHHHH
Q 037785 175 SKSHSEAERRRRERINNHLAKLRSLLPST-------TKTDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 175 ~~~h~~~ER~RR~~in~~~~~LrslvP~~-------~k~dK~siL~~ai~YIk~L~~~v 226 (365)
+.+|+.+||+||++||..|..|++|||.+ .+.+|++||+.||+||+.|++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999954 56679999999999999999765
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.43 E-value=1.2e-13 Score=109.60 Aligned_cols=57 Identities=25% Similarity=0.482 Sum_probs=52.6
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhcCCCC--CccchhhhHHHHHHHHHHHHHHHHHHHh
Q 037785 175 SKSHSEAERRRRERINNHLAKLRSLLPST--TKTDKASLLAEVIQHVKELKRQTSLIAE 231 (365)
Q Consensus 175 ~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~dK~siL~~ai~YIk~L~~~v~~L~~ 231 (365)
+.+|+..||+||.+||+.|..|+++||.. .|++|++||.+||+||+.|+.+++.|+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999974 8999999999999999999999888764
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=2.4e-13 Score=109.22 Aligned_cols=57 Identities=19% Similarity=0.372 Sum_probs=52.3
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC---CccchhhhHHHHHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST---TKTDKASLLAEVIQHVKELKRQTSLIA 230 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~L~~~v~~L~ 230 (365)
.+..|+..||+||.+||+.|..|+.+||.. .|++|++||.+||+||++|+.+...+.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999999999999999975 699999999999999999999987765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.33 E-value=7e-13 Score=103.76 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=48.8
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCC---CCcc-chhhhHHHHHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPS---TTKT-DKASLLAEVIQHVKELKRQTSLIA 230 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~---~~k~-dK~siL~~ai~YIk~L~~~v~~L~ 230 (365)
.+..|+..||+||..||+.|..||.+||. ..|. .|++||..||+||+.|++++++++
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999995 3555 688999999999999999999875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.30 E-value=2.8e-12 Score=101.28 Aligned_cols=57 Identities=28% Similarity=0.465 Sum_probs=51.9
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhcCCCC---CccchhhhHHHHHHHHHHHHHHHHHHHh
Q 037785 175 SKSHSEAERRRRERINNHLAKLRSLLPST---TKTDKASLLAEVIQHVKELKRQTSLIAE 231 (365)
Q Consensus 175 ~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~L~~~v~~L~~ 231 (365)
+..|+..||+||..||+.|..|+++||.. .|.+|++||.+|++||+.|+.+...+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999964 6889999999999999999999987764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.03 E-value=1.8e-10 Score=88.19 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=47.9
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC--CccchhhhHHHHHHHHHHHHHHH
Q 037785 174 ASKSHSEAERRRRERINNHLAKLRSLLPST--TKTDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 174 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~dK~siL~~ai~YIk~L~~~v 226 (365)
.+..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345599999999999999999999999964 68999999999999999999764
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.02 E-value=2.4e-10 Score=85.43 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=47.5
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhcCCCC---CccchhhhHHHHHHHHHHHHHHHH
Q 037785 175 SKSHSEAERRRRERINNHLAKLRSLLPST---TKTDKASLLAEVIQHVKELKRQTS 227 (365)
Q Consensus 175 ~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~L~~~v~ 227 (365)
+..|+..||+|+..||+.|..||.+||.. .|+.|+.||..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34488899999999999999999999965 589999999999999999998753
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.95 E-value=4.6e-10 Score=109.99 Aligned_cols=56 Identities=30% Similarity=0.512 Sum_probs=42.8
Q ss_pred HhhhhhccccHHHHHHHHHHHHHHHHHHhcCC-CCCccchhhhHHHHHHHHHHHHHH
Q 037785 170 KALAASKSHSEAERRRRERINNHLAKLRSLLP-STTKTDKASLLAEVIQHVKELKRQ 225 (365)
Q Consensus 170 k~~~~~~~h~~~ER~RR~~in~~~~~LrslvP-~~~k~dK~siL~~ai~YIk~L~~~ 225 (365)
|....+.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 44456778999999999999999999999999 568999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.84 E-value=1.4e-09 Score=107.76 Aligned_cols=58 Identities=36% Similarity=0.615 Sum_probs=49.9
Q ss_pred HHhhhhhccccHHHHHHHHHHHHHHHHHHhcCC----CCCccchhhhHHHHHHHHHHHHHHH
Q 037785 169 AKALAASKSHSEAERRRRERINNHLAKLRSLLP----STTKTDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 169 ~k~~~~~~~h~~~ER~RR~~in~~~~~LrslvP----~~~k~dK~siL~~ai~YIk~L~~~v 226 (365)
.|....+.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+...
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 344556778999999999999999999999999 6789999999999999999998543
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-08 Score=77.74 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC---CccchhhhHHHHHHHHHHHHH
Q 037785 181 AERRRRERINNHLAKLRSLLPST---TKTDKASLLAEVIQHVKELKR 224 (365)
Q Consensus 181 ~ER~RR~~in~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~L~~ 224 (365)
.||+|+..||+.|..||.+||.. .|+.|..||.-||+||..|+.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 59999999999999999999965 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.45 E-value=2.5e-07 Score=73.09 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCCC----CccchhhhHHHHHHHHHHHHHHHHHHHh
Q 037785 186 RERINNHLAKLRSLLPST----TKTDKASLLAEVIQHVKELKRQTSLIAE 231 (365)
Q Consensus 186 R~~in~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~L~~~v~~L~~ 231 (365)
|..||++|.+|..|||.+ .|.+|++||..||+||++|++.++.+.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999965 5789999999999999999987776653
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.98 E-value=1e-05 Score=65.65 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC---CccchhhhHHHHHHHHHHHHHHHHHH
Q 037785 181 AERRRRERINNHLAKLRSLLPST---TKTDKASLLAEVIQHVKELKRQTSLI 229 (365)
Q Consensus 181 ~ER~RR~~in~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~L~~~v~~L 229 (365)
.||.|-..||+-|..||.+||.. .|+.|..+|.-||+||..|+.-++.-
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 46889899999999999999964 68899999999999999999987654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.24 E-value=0.0041 Score=48.11 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=53.7
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHH
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEAL 333 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL 333 (365)
.+.+.|.|.||||+|.+|..+|.+.|..|.+.+..+.++...-.+.+...+. ..++.|.++|
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~------------------~~l~~l~~~L 66 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK------------------QDFTYLRNEF 66 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC------------------CCHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC------------------CCHHHHHHHH
Confidence 3457899999999999999999999999999999888887666666654331 2356788888
Q ss_pred HHHHHhc
Q 037785 334 KAVMEKT 340 (365)
Q Consensus 334 ~~vl~k~ 340 (365)
+.+-.+.
T Consensus 67 ~~~~~~~ 73 (91)
T 1zpv_A 67 EAFGQTL 73 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7765543
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.98 E-value=0.0037 Score=55.38 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=53.4
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
.|.|.|+||||++++|..+|.+.|+.|+.+.+.+.+|...-.+.|.... ...+.|+++|..
T Consensus 8 ~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------------------~~~~~l~~~L~~ 68 (192)
T 1u8s_A 8 VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------------------SNITRVETTLPL 68 (192)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------------------HHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------------------CCHHHHHHHHHH
Confidence 3679999999999999999999999999999998888877777775321 235678888887
Q ss_pred HHHhc
Q 037785 336 VMEKT 340 (365)
Q Consensus 336 vl~k~ 340 (365)
+..+.
T Consensus 69 ~~~~~ 73 (192)
T 1u8s_A 69 LGQQH 73 (192)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77543
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.78 E-value=0.0047 Score=55.26 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=42.4
Q ss_pred EEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEec
Q 037785 255 IKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITAD 303 (365)
Q Consensus 255 V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~ 303 (365)
+.|.|.|.||+|+++.|..+|.++|+.|+.|.+.+..|...-.|.|...
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 3467999999999999999999999999999999888876657777643
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.75 E-value=0.0025 Score=57.10 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=54.8
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEAL 333 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL 333 (365)
.+.|.|.||+|++.+|..+|.++|+.|..++..|.+ .+..+.|++....+... ... +.|+++|
T Consensus 95 iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--------------~~~-~~l~~~l 159 (195)
T 2nyi_A 95 ELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--------------PLY-QEVVTAL 159 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--------------GGH-HHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--------------Ccc-HHHHHHH
Confidence 367999999999999999999999999999999987 44556677765543210 134 6788888
Q ss_pred HHHHHhcc
Q 037785 334 KAVMEKTS 341 (365)
Q Consensus 334 ~~vl~k~~ 341 (365)
..+..+..
T Consensus 160 ~~~a~~l~ 167 (195)
T 2nyi_A 160 SRVEEEFG 167 (195)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 88776643
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.65 E-value=0.0088 Score=45.55 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=40.1
Q ss_pred eEEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEe
Q 037785 253 FVIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITA 302 (365)
Q Consensus 253 ~~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~ 302 (365)
+.+.+.|.+.||+|+|.+|..+|.+.|+.|.+.++.+.++.+..+|.+..
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 44567789999999999999999999999999999887774444444433
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.55 E-value=0.0096 Score=52.70 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=54.1
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCC----eEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHH
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGG----RAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSI 329 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~gg----rv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 329 (365)
...+.|.|.||+|++.+|.++|.+.|+.|..+...|.+. +..+.|++....+... ....+.|
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--------------~~~~~~l 158 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--------------GCNLMQL 158 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--------------TSCHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--------------CCCHHHH
Confidence 345779999999999999999999999999999998873 4556676665543111 1346778
Q ss_pred HHHHHHHHHhcc
Q 037785 330 EEALKAVMEKTS 341 (365)
Q Consensus 330 ~eAL~~vl~k~~ 341 (365)
+++|..+..+..
T Consensus 159 ~~~l~~~~~~~~ 170 (192)
T 1u8s_A 159 QEEFDALCTALD 170 (192)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999988776653
No 25
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=93.82 E-value=0.18 Score=42.65 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=32.5
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL 290 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ 290 (365)
+++|.|.||+|+|.+|+.+|.+.++.+..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 46789999999999999999999999999999766
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=93.04 E-value=0.33 Score=47.46 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=53.4
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALKA 335 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~~ 335 (365)
.+.+.|.||+|+...|...|.+.|..|+.++-++.+|++.-.+.+..... ....+.|+++|..
T Consensus 14 ~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-----------------~~~~~~l~~~l~~ 76 (415)
T 3p96_A 14 LITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-----------------VADGPALRHDVEA 76 (415)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-----------------HHTSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-----------------cCCHHHHHHHHHH
Confidence 37899999999999999999999999999999999997766665543221 1124678888887
Q ss_pred HHHhcc
Q 037785 336 VMEKTS 341 (365)
Q Consensus 336 vl~k~~ 341 (365)
+-.+..
T Consensus 77 ~~~~~~ 82 (415)
T 3p96_A 77 AIRKVG 82 (415)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 765544
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=92.67 E-value=0.71 Score=44.27 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=49.4
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee--CCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHH
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL--GGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEAL 333 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~--ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL 333 (365)
.+.+.|.||+|+...|...|.+.|..|+.++-++. +|+++-.+.+..... ....+.|+++|
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-----------------~~~~~~L~~~l 86 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-----------------PFDLDGFREAF 86 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-----------------SSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-----------------CCCHHHHHHHH
Confidence 36799999999999999999999999999998754 455433333322111 12367788888
Q ss_pred HHHHHhcc
Q 037785 334 KAVMEKTS 341 (365)
Q Consensus 334 ~~vl~k~~ 341 (365)
..+-++..
T Consensus 87 ~~la~~l~ 94 (302)
T 3o1l_A 87 TPIAEEFS 94 (302)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 77766554
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=91.96 E-value=0.57 Score=44.52 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=48.1
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE--eeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT--TLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is--T~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.+.|.||+|+...|...|.+.|..|+.++-+ ...|+.+-.+.+.... . ...+.|+++|.
T Consensus 11 Ltv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~-----------------~~~~~L~~~f~ 72 (286)
T 3n0v_A 11 LTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-D-----------------FDEAGFRAGLA 72 (286)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-S-----------------CCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-C-----------------CCHHHHHHHHH
Confidence 67999999999999999999999999998877 3445543333332211 1 23577888888
Q ss_pred HHHHhcc
Q 037785 335 AVMEKTS 341 (365)
Q Consensus 335 ~vl~k~~ 341 (365)
.+-++..
T Consensus 73 ~la~~l~ 79 (286)
T 3n0v_A 73 ERSEAFG 79 (286)
T ss_dssp HHHGGGT
T ss_pred HHHHHcC
Confidence 7755543
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=91.42 E-value=0.99 Score=42.91 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=49.1
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE--eeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT--TLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is--T~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.+.|.||+|+...|...|.+.|..|+.++-. ...|+.+-.+.+...... ...+.|+++|.
T Consensus 9 Ltv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-----------------~~~~~L~~~f~ 71 (288)
T 3obi_A 9 LTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-----------------IPLASLRTGFG 71 (288)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-----------------CCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-----------------CCHHHHHHHHH
Confidence 67999999999999999999999999999875 345554444444332211 23577888888
Q ss_pred HHHHhcc
Q 037785 335 AVMEKTS 341 (365)
Q Consensus 335 ~vl~k~~ 341 (365)
.+-++..
T Consensus 72 ~la~~~~ 78 (288)
T 3obi_A 72 VIAAKFT 78 (288)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 7765543
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=90.38 E-value=1.2 Score=42.44 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=48.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE--eeCCeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT--TLGGRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is--T~ggrv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
+.+.|.||+|+..+|...|.+.|..|+.++-+ ...|+.+-.+.+...... . ....+.|+++|.
T Consensus 13 Ltv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~--------------~~~~~~L~~~f~ 77 (292)
T 3lou_A 13 LTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDA-D--------------ALRVDALRREFE 77 (292)
T ss_dssp EEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-------------------CCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcc-c--------------CCCHHHHHHHHH
Confidence 67999999999999999999999999999877 345554433333322001 0 123567888887
Q ss_pred HHHHhcc
Q 037785 335 AVMEKTS 341 (365)
Q Consensus 335 ~vl~k~~ 341 (365)
.+-++..
T Consensus 78 ~la~~~~ 84 (292)
T 3lou_A 78 PIAERFR 84 (292)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 7666554
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=90.34 E-value=0.66 Score=40.64 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=46.0
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
++|.+++++|+|.+|..+|.+.|..|.+.++.+.. +...-+|.|. . + ...++.|.+.|.
T Consensus 6 IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~-d----------------~~~leqI~kqL~ 66 (164)
T 2f1f_A 6 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--G-D----------------EKVLEQIEKQLH 66 (164)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--S-C----------------HHHHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--c-c----------------HHHHHHHHHHHc
Confidence 56788999999999999999999999999987554 4455555554 2 1 244666777776
Q ss_pred HHH
Q 037785 335 AVM 337 (365)
Q Consensus 335 ~vl 337 (365)
.+.
T Consensus 67 Kl~ 69 (164)
T 2f1f_A 67 KLV 69 (164)
T ss_dssp HST
T ss_pred CCC
Confidence 654
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=88.96 E-value=0.64 Score=42.82 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=30.0
Q ss_pred EEEEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC
Q 037785 254 VIKASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG 291 (365)
Q Consensus 254 ~V~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g 291 (365)
.+.+.|.+.||+|+|++|+.+|.+.+..|.+.+..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 35567899999999999999999999999999998764
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=88.72 E-value=0.91 Score=39.83 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=46.3
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeC--CeEEEEEEEEecCCCCCCCcccchhhhhhhhhhhHHHHHHHHH
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLG--GRAKNVLFITADDQDSSCSSAAGEQHQQQQQQYSISSIEEALK 334 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~g--grv~~vf~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~eAL~ 334 (365)
++|..++++|.|.+|...|.+.|..|.+..+.+.. +...-+|.|... ...++.|.+.|.
T Consensus 7 IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d-------------------~~~leql~kQL~ 67 (165)
T 2pc6_A 7 ISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-------------------DEIVEQITKQLN 67 (165)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-------------------HHHHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc-------------------HHHHHHHHHHhc
Confidence 56788999999999999999999999999987543 555656666421 144666777776
Q ss_pred HHH
Q 037785 335 AVM 337 (365)
Q Consensus 335 ~vl 337 (365)
.+.
T Consensus 68 Kl~ 70 (165)
T 2pc6_A 68 KLI 70 (165)
T ss_dssp HST
T ss_pred CCC
Confidence 654
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=86.60 E-value=2.2 Score=40.49 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=33.2
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEE--eeCCeEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEIT--TLGGRAK 295 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~Is--T~ggrv~ 295 (365)
+.+.|.||+|+...|...|.+.|..|+.++-. ..+|+++
T Consensus 10 Ltv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff 50 (287)
T 3nrb_A 10 LSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFF 50 (287)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEE
Confidence 67999999999999999999999999999875 3345443
No 35
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=84.21 E-value=0.19 Score=49.31 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=2.8
Q ss_pred hhhhhHHHHHHH
Q 037785 14 QTIHNLQSYQEQ 25 (365)
Q Consensus 14 ~~~~~~~~~q~~ 25 (365)
+..+++|++|||
T Consensus 382 ~~~~~~~~~~~~ 393 (449)
T 3iot_A 382 ESLKSFQQQQQQ 393 (449)
T ss_dssp HHHHHTC-----
T ss_pred HHHHhhcccccc
Confidence 334444443333
No 36
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=80.33 E-value=2.4 Score=38.19 Aligned_cols=45 Identities=7% Similarity=0.186 Sum_probs=36.0
Q ss_pred EeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEee-C-CeEEEEEEEE
Q 037785 257 ASLCCEDRSDLLPDLIKSLKALRLRTLKAEITTL-G-GRAKNVLFIT 301 (365)
Q Consensus 257 v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~-g-grv~~vf~V~ 301 (365)
+.|..+++||.|.+|...|...|..|.+-.+... + +...-+|.|.
T Consensus 32 LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 32 VSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 5677899999999999999999999999888633 3 4555556664
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=76.78 E-value=8.5 Score=36.39 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=38.9
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEecCC
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITADDQ 305 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~~~ 305 (365)
+...++||.|.++|..|...|+.+.+-+.-...++ --+.|+|..+..
T Consensus 205 f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~ 252 (283)
T 2qmx_A 205 FALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH 252 (283)
T ss_dssp EEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC
T ss_pred EEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC
Confidence 34468999999999999999999999999877765 477888876653
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=73.80 E-value=27 Score=33.69 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeE-EEEEEEEecC
Q 037785 263 DRSDLLPDLIKSLKALRLRTLKAEITTLGGRA-KNVLFITADD 304 (365)
Q Consensus 263 ~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv-~~vf~V~~~~ 304 (365)
++||.|.++|..|...|+...+-+.-...++. -+.|+|..+.
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg 259 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDA 259 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeC
Confidence 68999999999999999999999998887775 6777776544
No 39
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=72.81 E-value=13 Score=34.76 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=38.8
Q ss_pred eee---CCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEec
Q 037785 259 LCC---EDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITAD 303 (365)
Q Consensus 259 I~C---~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~ 303 (365)
+.. .++||.|.++|..|...|+.+.+-+.-...++ --+.|+|..+
T Consensus 191 f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 191 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred EEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 555 78999999999999999999999998877665 4788888877
No 40
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=69.38 E-value=17 Score=34.93 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=38.1
Q ss_pred eeeC-CCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeE-EEEEEEEecC
Q 037785 259 LCCE-DRSDLLPDLIKSLKALRLRTLKAEITTLGGRA-KNVLFITADD 304 (365)
Q Consensus 259 I~C~-~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv-~~vf~V~~~~ 304 (365)
+.-. ++||.|.++|..|...|+.+.+-+.-...+.. -+.|+|....
T Consensus 206 f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg 253 (313)
T 3mwb_A 206 VPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADG 253 (313)
T ss_dssp EECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEES
T ss_pred EEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeC
Confidence 4554 89999999999999999999999988766554 6788887654
No 41
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=69.38 E-value=11 Score=30.95 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=30.1
Q ss_pred eeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEE
Q 037785 258 SLCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVL 298 (365)
Q Consensus 258 ~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf 298 (365)
.+.-.++||.+.+++++|.+.|+.|...-.+.-+++...+|
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 34567999999999999999999997655442345444444
No 42
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=56.05 E-value=26 Score=28.65 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=28.7
Q ss_pred EEeeeeCCCCCcHHHHHHHHHhCCCeeeeeEEEe
Q 037785 256 KASLCCEDRSDLLPDLIKSLKALRLRTLKAEITT 289 (365)
Q Consensus 256 ~v~I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT 289 (365)
+++|..+++||.+.+|+.+|.+.|+.|..-.+..
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 3567778999999999999999999888776653
No 43
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=46.79 E-value=30 Score=34.65 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=37.5
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCe-EEEEEEEEec
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGR-AKNVLFITAD 303 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggr-v~~vf~V~~~ 303 (365)
+...+++|.|.++|..|...|+.+++-+.-...+. --+.|+|...
T Consensus 39 Fsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 39 FSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp EEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred EEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe
Confidence 45578899999999999999999999998877554 4778888665
No 44
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=33.63 E-value=52 Score=23.50 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCc
Q 037785 180 EAERRRRERINNHLAKLRSLLPSTTK 205 (365)
Q Consensus 180 ~~ER~RR~~in~~~~~LrslvP~~~k 205 (365)
+++|-+|...++-+.+|+++.|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 46788888899999999999998765
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.56 E-value=86 Score=22.56 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 037785 183 RRRRERINNHLAKLRS 198 (365)
Q Consensus 183 R~RR~~in~~~~~Lrs 198 (365)
|++|.+..++.++-++
T Consensus 2 kr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKC 17 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHH
Confidence 3444444444444444
No 46
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=31.35 E-value=49 Score=19.65 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 037785 209 ASLLAEVIQHVKELKRQTSL 228 (365)
Q Consensus 209 ~siL~~ai~YIk~L~~~v~~ 228 (365)
.|-|-+|-.|+..|.++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 46678999999999988764
No 47
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=30.54 E-value=60 Score=27.32 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=21.5
Q ss_pred CCCCCcHHHHHHHHHhCCCeeeeeE
Q 037785 262 EDRSDLLPDLIKSLKALRLRTLKAE 286 (365)
Q Consensus 262 ~~RpGLLs~Il~aLeeLgL~Vv~A~ 286 (365)
.+++|.+.+|+++|.+.|+.|.-..
T Consensus 25 ~~~~G~~a~if~~La~~~InVd~I~ 49 (167)
T 2dt9_A 25 PDQPGIAAKVFQALAERGIAVDMII 49 (167)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCSCEE
T ss_pred CCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 6889999999999999998776543
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=30.53 E-value=1.2e+02 Score=25.80 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=23.3
Q ss_pred eCCCCCcHHHHHHHHHhCCCeeeeeEEEee
Q 037785 261 CEDRSDLLPDLIKSLKALRLRTLKAEITTL 290 (365)
Q Consensus 261 C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ 290 (365)
-.+++|.+.+|+++|.+.|+.|.-...++.
T Consensus 23 ~~~~~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 23 ISDKPGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp EECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 478999999999999999966655444433
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=27.72 E-value=1.3e+02 Score=25.13 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=24.1
Q ss_pred EeeeeCC---CCCcHHHHHHHHHhCCCeeeee
Q 037785 257 ASLCCED---RSDLLPDLIKSLKALRLRTLKA 285 (365)
Q Consensus 257 v~I~C~~---RpGLLs~Il~aLeeLgL~Vv~A 285 (365)
|.|.+.. ++|.+.+++++|.+.|+.|.-.
T Consensus 106 vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i 137 (167)
T 2re1_A 106 VSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI 137 (167)
T ss_dssp EEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred EEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence 4555554 8999999999999999999873
No 50
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=26.89 E-value=1.1e+02 Score=25.57 Aligned_cols=31 Identities=3% Similarity=0.042 Sum_probs=24.6
Q ss_pred Eeee-eCCCCCcHHHHHHHHHhCCCeeeeeEE
Q 037785 257 ASLC-CEDRSDLLPDLIKSLKALRLRTLKAEI 287 (365)
Q Consensus 257 v~I~-C~~RpGLLs~Il~aLeeLgL~Vv~A~I 287 (365)
|.|. -.+++|.+.+|+++|.+.|+.|.-...
T Consensus 28 i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 28 INVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 3454 378999999999999999987766543
No 51
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.48 E-value=68 Score=21.43 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037785 212 LAEVIQHVKELKRQTSLIA 230 (365)
Q Consensus 212 L~~ai~YIk~L~~~v~~L~ 230 (365)
+.+--+||++|+++..+|.
T Consensus 5 vkelknyiqeleernaelk 23 (46)
T 3he4_B 5 VKELKNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 4566789999999887775
No 52
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.78 E-value=87 Score=19.08 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=16.5
Q ss_pred cchhhhHHHHHHHHHHHHHHH
Q 037785 206 TDKASLLAEVIQHVKELKRQT 226 (365)
Q Consensus 206 ~dK~siL~~ai~YIk~L~~~v 226 (365)
++..-+|-+|.+||...+++.
T Consensus 2 ~~nvq~LLeAAeyLErrEre~ 22 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERREREA 22 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 456778999999999877643
No 53
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=21.50 E-value=2e+02 Score=28.02 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.9
Q ss_pred eeeCCCCCcHHHHHHHHHhCCCeeeeeEEEeeCCeEEEEEEE
Q 037785 259 LCCEDRSDLLPDLIKSLKALRLRTLKAEITTLGGRAKNVLFI 300 (365)
Q Consensus 259 I~C~~RpGLLs~Il~aLeeLgL~Vv~A~IsT~ggrv~~vf~V 300 (365)
+.-.++||.+.+|..+|-+.|+.|..-.+.+.|+...-++-|
T Consensus 336 ~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 336 HIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp EEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 455799999999999999999999999999988876666544
No 54
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.63 E-value=1.8e+02 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 037785 180 EAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAET 232 (365)
Q Consensus 180 ~~ER~RR~~in~~~~~LrslvP~~~k~dK~siL~~ai~YIk~L~~~v~~L~~~ 232 (365)
+...+|+ +..+.|..|.+.+ . -..+.|=+||..|+++++.|++.
T Consensus 42 WqDqkr~-kFee~fe~l~s~l------~--~f~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 42 WRDARRD-KFSEVLDNLKSTF------N--EFDEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp CCSHHHH-HHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHH-HHHHHHHHHHHHH------H--HHHHhhHHHhHHHHHHHHHhHHH
Confidence 3344333 4566666665542 1 12357889999999999999864
Done!