BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037786
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 238/513 (46%), Gaps = 69/513 (13%)
Query: 58 LSNLQMVRLKFNSNLSGVFPR--SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115
L +LQ + L N +G P S L LD+SG F G +P + L L LS
Sbjct: 265 LKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 116 QCNFYGFLPA-SLGNVTQLAVLSLSFKSFSGHIPPSLSNLH-QLTDVDLGSNSFDGQFPD 173
NF G LP +L + L VL LSF FSG +P SL+NL L +DL SN+F G P
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--PI 381
Query: 174 IMNLTR-----ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+ NL + + L + NN TG IP S L L L N LSGTIPS L +L L
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 229 RDIDLSDNQLTGHL--DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG 286
RD+ L N L G + + K+L L L N L G IPS + NL ++SL++N +G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 287 IVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLEL 346
+ P + +L NLA L+LS+NS S NI A RSL
Sbjct: 502 EI-PKWIGRLENLAILKLSNNSFS---------------------GNIPAELGDCRSL-- 537
Query: 347 AYLDLSENNIDGQIPNWMW-EVGKDTLSFLDLSHNFITEMKQIPWKN---LKYLKLQSNL 402
+LDL+ N +G IP M+ + GK ++ NFI + + KN K NL
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGK-------IAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 403 L--QGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
L QG + +L L N + +S T + S+ +L++S+N
Sbjct: 591 LEFQG---IRSEQLNRLSTRNPCNITSRVYGGHTSPTFD--------NNGSMMFLDMSYN 639
Query: 461 FITKM--KQI-SWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN---NQFTGEIIHSICD 514
++ K+I S L L+L N + G + LR + IL+ N+ G I ++
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 515 IIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKW 547
+ L +DLSNN LSG IP+ +G F + K+
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKF 731
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 186/399 (46%), Gaps = 65/399 (16%)
Query: 49 GEFP-ENIFRLSNLQMVRLKFNSNLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICN 105
GE P + + ++ L+++ L FN SG P S N ++ L LD+S FSG + ++C
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 106 --LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163
L+EL+L F G +P +L N ++L L LSF SG IP SL +L +L D+ L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 164 SNSFDGQFPD-------------------------IMNLTRISRLDISNNQLTGSIPSHG 198
N +G+ P + N T ++ + +SNN+LTG IP
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 199 SGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSK---------- 248
L+NLA+L+L NN+ SG IP+ L L +DL+ N G + A K
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 249 -SLRKLYLTNNRL----HGS---------IPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
R +Y+ N+ + HG+ + L+ ++ S + G P
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFD 626
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA-FPSFLRSLE-LAYLDLS 352
++ L++S+N LS G K S P +FIL+L +IS P + L L LDLS
Sbjct: 627 NNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNF----ITEMKQ 387
N +DG+IP M + L+ +DLS+N I EM Q
Sbjct: 686 SNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIPEMGQ 722
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 199/437 (45%), Gaps = 69/437 (15%)
Query: 125 ASLGNVTQLAVLSLSFKS--FSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMN------ 176
SLG+ + L L++S + F G + L L+ L +DL +NS G +++
Sbjct: 117 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDG 173
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236
+ L IS N+++G + S NL L + +N S IP +L L+ +D+S N
Sbjct: 174 CGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 230
Query: 237 QLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
+L+G S L+ L +++N+ G IP L +L YLSLA N F+G + ++
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA---FPSFLRSLELAYLDL 351
L L+LS N +G S + L+LS+ N S + L+ L LDL
Sbjct: 289 ACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 352 SENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL---- 407
S N G++P S +LS + +T L L SN GP+
Sbjct: 348 SFNEFSGELPE----------SLTNLSASLLT------------LDLSSNNFSGPILPNL 385
Query: 408 -PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466
P LQ L NN FTG+I ++ + S L L+LS N+++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCS--------------ELVSLHLSFNYLSGTI 431
Query: 467 QISWKNLGYL-DLRS--NLLQGPL---LVPPSSLRVILILNNQFTGEIIHSICDIIALDV 520
S +L L DL+ N+L+G + L+ +L +++ N TGEI + + L+
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 521 LDLSNNRLSGTIPKCIG 537
+ LSNNRL+G IPK IG
Sbjct: 492 ISLSNNRLTGEIPKWIG 508
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 195/422 (46%), Gaps = 59/422 (13%)
Query: 132 QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLT 191
+L L++S SG + +S L +D+ SN+F P + + + + LDIS N+L+
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 233
Query: 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL--LRDIDLSDNQLTGHLDAFPS-- 247
G S L +L + +N G IP LPL L+ + L++N+ TG + F S
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 248 -KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
+L L L+ N +G++P + L L+L+SNNFSG + L K+ L L+LS
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 307 NSLSFGTTSKVNSSFPQIFILSLSACNISA--FPSFLRSLE--LAYLDLSENNIDGQIPN 362
N S + + + L LS+ N S P+ ++ + L L L N G+IP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 363 WMWEVGKDTLSFLDLSHNFITEMKQIP-----WKNLKYLKLQSNLLQGPLP---VPPPRL 414
+ + L L LS N+++ IP L+ LKL N+L+G +P + L
Sbjct: 410 TLSNCSE--LVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLG 474
+ L+ N TGEI + + + L +WIS LS+N +T + W +G
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNL---NWIS-----------LSNNRLTG-EIPKW--IG 508
Query: 475 YLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPK 534
L+ +L ++ + NN F+G I + D +L LDL+ N +GTIP
Sbjct: 509 RLE---------------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 535 CI 536
+
Sbjct: 554 AM 555
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 90/420 (21%)
Query: 146 HIPPSLSNLH---QLTDVDLGSNSFDGQFPDIMNLTRISRL---DISNNQLT--GSIPSH 197
HI S+S LT +DL NS G + +L S L ++S+N L G + S
Sbjct: 85 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-SG 143
Query: 198 GSGLQNLAVLRLYNNTLSGT-IPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLT 256
G L +L VL L N++SG + W+ LSD L+ L ++
Sbjct: 144 GLKLNSLEVLDLSANSISGANVVGWV----------LSDG----------CGELKHLAIS 183
Query: 257 NNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSK 316
N++ G + + NL +L ++SNNFS + P+ L L L++S N LS G S+
Sbjct: 184 GNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDISGNKLS-GDFSR 238
Query: 317 VNSSFPQIFILSLSACN-ISAFPSF-LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374
S+ ++ +L++S+ + P L+SL+ YL L+EN G+IP+++ DTL+
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLPLKSLQ--YLSLAENKFTGEIPDFL-SGACDTLTG 295
Query: 375 LDLSHNFITEMKQIP-----WKNLKYLKLQSNLLQGPLPVPP----PRLQFLLASNNQFT 425
LDLS N +P L+ L L SN G LP+ L+ L S N+F+
Sbjct: 296 LDLSGNHF--YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 426 GEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG 485
GE+ +S+ NLS + +T LDL SN G
Sbjct: 354 GELPESLT----------------------NLSASLLT------------LDLSSNNFSG 379
Query: 486 PLLV-----PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
P+L P ++L+ + + NN FTG+I ++ + L L LS N LSGTIP +G+ S
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 148/337 (43%), Gaps = 30/337 (8%)
Query: 1 VMEALVQN-VTKLQLLFLDYVDMSTVVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLS 59
++ L QN LQ L+L + +P TL N + + G P ++ LS
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLS 439
Query: 60 NLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN 118
L+ ++L N L G P+ + L L + +G++P + N +L + LS
Sbjct: 440 KLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 119 FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM--- 175
G +P +G + LA+L LS SFSG+IP L + L +DL +N F+G P M
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 176 ------NLTRISR-LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWL------ 222
N R + I N+ + G+ L+ + N LS P +
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 223 -FTLPLLRD------IDLSDNQLTGHL--DAFPSKSLRKLYLTNNRLHGSIPSSIFELAN 273
T P + +D+S N L+G++ + L L L +N + GSIP + +L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
L L L+SN G + P ++ L L ++LS+N+LS
Sbjct: 679 LNILDLSSNKLDGRI-PQAMSALTMLTEIDLSNNNLS 714
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 26/256 (10%)
Query: 9 VTKLQLLFLDYVDMSTVVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLSNLQMVRLKF 68
V L+ L LD+ D++ +P L N R+ GE P+ I RL NL +++L
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSN 520
Query: 69 NSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDS------------ICNLRHL------ 109
NS SG P L LD++ F+G +P + I R++
Sbjct: 521 NS-FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 110 --RELHLSQ--CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165
+E H + F G L ++ +++ + + GH P+ N + +D+ N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 166 SFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT 224
G P +I ++ + L++ +N ++GSIP L+ L +L L +N L G IP +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 225 LPLLRDIDLSDNQLTG 240
L +L +IDLS+N L+G
Sbjct: 700 LTMLTEIDLSNNNLSG 715
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 238/513 (46%), Gaps = 69/513 (13%)
Query: 58 LSNLQMVRLKFNSNLSGVFPR--SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115
L +LQ + L N +G P S L LD+SG F G +P + L L LS
Sbjct: 268 LKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 116 QCNFYGFLPA-SLGNVTQLAVLSLSFKSFSGHIPPSLSNLH-QLTDVDLGSNSFDGQFPD 173
NF G LP +L + L VL LSF FSG +P SL+NL L +DL SN+F G P
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--PI 384
Query: 174 IMNLTR-----ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+ NL + + L + NN TG IP S L L L N LSGTIPS L +L L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 229 RDIDLSDNQLTGHL--DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG 286
RD+ L N L G + + K+L L L N L G IPS + NL ++SL++N +G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 287 IVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLEL 346
+ P + +L NLA L+LS+NS S NI A RSL
Sbjct: 505 EI-PKWIGRLENLAILKLSNNSFS---------------------GNIPAELGDCRSL-- 540
Query: 347 AYLDLSENNIDGQIPNWMW-EVGKDTLSFLDLSHNFITEMKQIPWKN---LKYLKLQSNL 402
+LDL+ N +G IP M+ + GK ++ NFI + + KN K NL
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGK-------IAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 403 L--QGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
L QG + +L L N + +S T + S+ +L++S+N
Sbjct: 594 LEFQG---IRSEQLNRLSTRNPCNITSRVYGGHTSPTFD--------NNGSMMFLDMSYN 642
Query: 461 FITKM--KQI-SWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN---NQFTGEIIHSICD 514
++ K+I S L L+L N + G + LR + IL+ N+ G I ++
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 515 IIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKW 547
+ L +DLSNN LSG IP+ +G F + K+
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKF 734
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 186/399 (46%), Gaps = 65/399 (16%)
Query: 49 GEFP-ENIFRLSNLQMVRLKFNSNLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICN 105
GE P + + ++ L+++ L FN SG P S N ++ L LD+S FSG + ++C
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 106 --LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163
L+EL+L F G +P +L N ++L L LSF SG IP SL +L +L D+ L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 164 SNSFDGQFPD-------------------------IMNLTRISRLDISNNQLTGSIPSHG 198
N +G+ P + N T ++ + +SNN+LTG IP
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 199 SGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSK---------- 248
L+NLA+L+L NN+ SG IP+ L L +DL+ N G + A K
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 249 -SLRKLYLTNNRL----HGS---------IPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
R +Y+ N+ + HG+ + L+ ++ S + G P
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFD 629
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA-FPSFLRSLE-LAYLDLS 352
++ L++S+N LS G K S P +FIL+L +IS P + L L LDLS
Sbjct: 630 NNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNF----ITEMKQ 387
N +DG+IP M + L+ +DLS+N I EM Q
Sbjct: 689 SNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIPEMGQ 725
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 199/437 (45%), Gaps = 69/437 (15%)
Query: 125 ASLGNVTQLAVLSLSFKS--FSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMN------ 176
SLG+ + L L++S + F G + L L+ L +DL +NS G +++
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDG 176
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236
+ L IS N+++G + S NL L + +N S IP +L L+ +D+S N
Sbjct: 177 CGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 233
Query: 237 QLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
+L+G S L+ L +++N+ G IP L +L YLSLA N F+G + ++
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA---FPSFLRSLELAYLDL 351
L L+LS N +G S + L+LS+ N S + L+ L LDL
Sbjct: 292 ACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 352 SENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL---- 407
S N G++P S +LS + +T L L SN GP+
Sbjct: 351 SFNEFSGELPE----------SLTNLSASLLT------------LDLSSNNFSGPILPNL 388
Query: 408 -PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466
P LQ L NN FTG+I ++ + S L L+LS N+++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCS--------------ELVSLHLSFNYLSGTI 434
Query: 467 QISWKNLGYL-DLRS--NLLQGPL---LVPPSSLRVILILNNQFTGEIIHSICDIIALDV 520
S +L L DL+ N+L+G + L+ +L +++ N TGEI + + L+
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 521 LDLSNNRLSGTIPKCIG 537
+ LSNNRL+G IPK IG
Sbjct: 495 ISLSNNRLTGEIPKWIG 511
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 212/466 (45%), Gaps = 62/466 (13%)
Query: 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHI 147
LD G + SG L + + L +S N G++ + +L L++S SG +
Sbjct: 138 LDFPG-KVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV 194
Query: 148 PPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVL 207
+S L +D+ SN+F P + + + + LDIS N+L+G S L +L
Sbjct: 195 --DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 208 RLYNNTLSGTIPSWLFTLPL--LRDIDLSDNQLTGHLDAFPS---KSLRKLYLTNNRLHG 262
+ +N G IP LPL L+ + L++N+ TG + F S +L L L+ N +G
Sbjct: 253 NISSNQFVGPIP----PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322
++P + L L+L+SNNFSG + L K+ L L+LS N S + +
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 323 QIFILSLSACNISA--FPSFLRSLE--LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLS 378
+ L LS+ N S P+ ++ + L L L N G+IP + + L L LS
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLS 426
Query: 379 HNFITEMKQIP-----WKNLKYLKLQSNLLQGPLP---VPPPRLQFLLASNNQFTGEIIQ 430
N+++ IP L+ LKL N+L+G +P + L+ L+ N TGEI
Sbjct: 427 FNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 431 SICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVP 490
+ + + L +WIS LS+N +T + W +G L+
Sbjct: 485 GLSNCTNL---NWIS-----------LSNNRLTG-EIPKW--IGRLE------------- 514
Query: 491 PSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536
+L ++ + NN F+G I + D +L LDL+ N +GTIP +
Sbjct: 515 --NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 166/364 (45%), Gaps = 61/364 (16%)
Query: 233 LSDNQLTGHLDAFP-SKSLRKLYLTNNRLHGSIPS--SIFELANLTYLSLASN--NFSGI 287
LS++ + G + F S SL L L+ N L G + + S+ + L +L+++SN +F G
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 288 VEPYMLAKLVNLAALELSHNSLSFGTTSK--VNSSFPQIFILSLSACNISAFPSFLRSLE 345
V + KL +L L+LS NS+S ++ ++ L++S IS R +
Sbjct: 144 VSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFIT---EMKQIPWKNLKYLKLQSNL 402
L +LD+S NN IP ++ + L LD+S N ++ LK L + SN
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDC--SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 403 LQGPLP-VPPPRLQFLLASNNQFTGEI---IQSICSSSTL----------EIPSWIS--- 445
GP+P +P LQ+L + N+FTGEI + C + T +P +
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 446 --------------EIGKDSL------SYLNLSHNFITKMKQISWKNLGY----LDLRSN 481
E+ D+L L+LS N + S NL LDL SN
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 482 LLQGPLLV-----PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536
GP+L P ++L+ + + NN FTG+I ++ + L L LS N LSGTIP +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 537 GNFS 540
G+ S
Sbjct: 439 GSLS 442
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 148/337 (43%), Gaps = 30/337 (8%)
Query: 1 VMEALVQN-VTKLQLLFLDYVDMSTVVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLS 59
++ L QN LQ L+L + +P TL N + + G P ++ LS
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLS 442
Query: 60 NLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN 118
L+ ++L N L G P+ + L L + +G++P + N +L + LS
Sbjct: 443 KLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 119 FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM--- 175
G +P +G + LA+L LS SFSG+IP L + L +DL +N F+G P M
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 176 ------NLTRISR-LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWL------ 222
N R + I N+ + G+ L+ + N LS P +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 223 -FTLPLLRD------IDLSDNQLTGHL--DAFPSKSLRKLYLTNNRLHGSIPSSIFELAN 273
T P + +D+S N L+G++ + L L L +N + GSIP + +L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
L L L+SN G + P ++ L L ++LS+N+LS
Sbjct: 682 LNILDLSSNKLDGRI-PQAMSALTMLTEIDLSNNNLS 717
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 26/256 (10%)
Query: 9 VTKLQLLFLDYVDMSTVVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLSNLQMVRLKF 68
V L+ L LD+ D++ +P L N R+ GE P+ I RL NL +++L
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSN 523
Query: 69 NSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDS------------ICNLRHL------ 109
NS SG P L LD++ F+G +P + I R++
Sbjct: 524 NS-FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 110 --RELHLSQ--CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165
+E H + F G L ++ +++ + + GH P+ N + +D+ N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 166 SFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT 224
G P +I ++ + L++ +N ++GSIP L+ L +L L +N L G IP +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 225 LPLLRDIDLSDNQLTG 240
L +L +IDLS+N L+G
Sbjct: 703 LTMLTEIDLSNNNLSG 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 4/195 (2%)
Query: 97 GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQ 156
G +P +I L L L+++ N G +P L + L L S+ + SG +PPS+S+L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 157 LTDVDLGSNSFDGQFPD-IMNLTRI-SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214
L + N G PD + +++ + + IS N+LTG IP + L NLA + L N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP-SKSLRKLYLTNNRLHGSIPSSIFELAN 273
G + + I L+ N L L SK+L L L NNR++G++P + +L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 274 LTYLSLASNNFSGIV 288
L L+++ NN G +
Sbjct: 270 LHSLNVSFNNLCGEI 284
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Query: 49 GEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLR 107
G P I +L+ L + + ++N+SG P + L LD S SG LP SI +L
Sbjct: 91 GPIPPAIAKLTQLHYLYIT-HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 108 HLRELHLSQCNFYGFLPASLGNVTQL-AVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166
+L + G +P S G+ ++L +++S +G IPP+ +NL+ L VDL N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 167 FDGQFPDIMNLTR-ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTL 225
+G + + ++ ++ N L + G +NL L L NN + GT+P L L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 226 PLLRDIDLSDNQLTGHL 242
L +++S N L G +
Sbjct: 268 KFLHSLNVSFNNLCGEI 284
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 218 IPSWLFTLPLLRDIDLSD-NQLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFELANL 274
IPS L LP L + + N L G + +K L LY+T+ + G+IP + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFI-LSLSACN 333
L + N SG + P ++ L NL + N +S G SF ++F +++S
Sbjct: 128 VTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNR 185
Query: 334 ISA-FPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW-K 391
++ P +L LA++DLS N ++G + ++ K+T ++ ++ ++ K
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 392 NLKYLKLQSNLLQGPLPVPPPRLQFLLASN---NQFTGEIIQS 431
NL L L++N + G LP +L+FL + N N GEI Q
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 17/224 (7%)
Query: 155 HQLTDVDLGSNSFDGQFP---DIMNLTRISRLDISN-NQLTGSIPSHGSGLQNLAVLRLY 210
+++ ++DL + +P + NL ++ L I N L G IP + L L L +
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKS----LRKLYLTNNRLHGSIPS 266
+ +SG IP +L + L +D S N L+G L PS S L + NR+ G+IP
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--PSISSLPNLVGITFDGNRISGAIPD 167
Query: 267 SIFELANL-TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIF 325
S + L T ++++ N +G + P A L NLA ++LS N L G S + S
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRNMLE-GDASVLFGSDKNTQ 224
Query: 326 ILSLSACNISAFP--SFLRSLELAYLDLSENNIDGQIPNWMWEV 367
+ L A N AF S L LDL N I G +P + ++
Sbjct: 225 KIHL-AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 67/216 (31%)
Query: 338 PSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLK 397
P+ + +L YL ++ N+ G IP+++ ++ TL LD S+N ++
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGT------------ 140
Query: 398 LQSNLLQGPLPVPP-----PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE---IGK 449
+PP P L + N+ +G I S S S L IS GK
Sbjct: 141 -----------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEII 509
++ NL NL ++DL N+L+G V + + + I
Sbjct: 190 IPPTFANL--------------NLAFVDLSRNMLEGDASV---------LFGSDKNTQKI 226
Query: 510 HSICDIIALDV-----------LDLSNNRLSGTIPK 534
H + +A D+ LDL NNR+ GT+P+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 452 LSYLNLSHNFI--TKMKQISWKNLGYLDLRSNLLQGPLLVPPS-----SLRVILILNNQF 504
LS LNL + + + + + N Y+ +NL+ GP +PP+ L + I +
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GP--IPPAIAKLTQLHYLYITHTNV 113
Query: 505 TGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536
+G I + I L LD S N LSGT+P I
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 440 IPSWISEIGKDSLSYLNLSHNFITK-----MKQISWKNLGYLDLRSNLLQGPLLVPPS-- 492
IP I+++ + L YL ++H ++ + QI K L LD N L G L PPS
Sbjct: 93 IPPAIAKLTQ--LHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTL--PPSIS 146
Query: 493 ---SLRVILILNNQFTGEIIHSICDIIAL-DVLDLSNNRLSGTIPKCIGNFS 540
+L I N+ +G I S L + +S NRL+G IP N +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 151/332 (45%), Gaps = 37/332 (11%)
Query: 151 LSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
L NL +L D+ + +N P + NLT ++ L + NNQ+T P L NL L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE 270
+NT+S S L L L+ + S NQ+T +L +L +++N++ S I
Sbjct: 138 SNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKV-----SDISV 190
Query: 271 LANLTYLS--LASNNFSGIVEPYMLAKLVNLAALELSHNSL-SFGTTSKVNSSFPQIFIL 327
LA LT L +A+NN + P L L NL L L+ N L GT +S + L
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDL 244
Query: 328 SLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ 387
L+ IS +L L L N QI N G L+ L+L+ N + ++
Sbjct: 245 DLANNQISNLAPLSGLTKLTELKLGAN----QISNISPLAGLTALTNLELNENQLEDISP 300
Query: 388 IP-WKNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
I KNL YL L N + PV +LQ L SNN+ + + S + L +W+S
Sbjct: 301 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK-----VSDVSSLANLTNINWLS 355
Query: 446 EIGKDSLSYLNLSHNFITKMKQI-----SWKN 472
G + +S L N +T++ Q+ +W N
Sbjct: 356 A-GHNQISDLTPLAN-LTRITQLGLNDQAWTN 385
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114
+ L+NL + L FN+ ++ + P N T+ L L++S S ++ L L++L
Sbjct: 103 LANLTNLTGLTL-FNNQITDIDPLKNLTN-LNRLELSSNTISD--ISALSGLTSLQQLSF 158
Query: 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQFPD 173
S P L N+T L L +S S + L+NL L + + Q D
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI-------ATNNQISD 209
Query: 174 IMNL---TRISRLDISNNQLT--GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
I L T + L ++ NQL G++ S L NL L L NN +S P L L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 229 RDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV 288
++ L NQ++ +L L L N+L P I L NLTYL+L NN S I
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 289 EPYMLAKL 296
L KL
Sbjct: 322 PVSSLTKL 329
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 165/374 (44%), Gaps = 56/374 (14%)
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDIS 186
L VT L L KS G + L+ LT ++ +N P + NLT++ + ++
Sbjct: 40 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMN 93
Query: 187 NNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP 246
NNQ+ P + L NL L L+NN ++ P L L L ++LS N ++
Sbjct: 94 NNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
Query: 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLS---LASNNFSGIVEPYMLAKLVNLAALE 303
SL++L ++N++ P LANLT L ++SN S I +LAKL NL +L
Sbjct: 150 LTSLQQLSFSSNQVTDLKP-----LANLTTLERLDISSNKVSDI---SVLAKLTNLESLI 201
Query: 304 LSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID------ 357
++N +S T + ++ + LSL+ + + L LDL+ N I
Sbjct: 202 ATNNQISDITPLGILTNLDE---LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 358 ------------GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-WKNLKYLKLQSNLLQ 404
QI N G L+ L+L+ N + ++ I KNL YL L N +
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 318
Query: 405 GPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463
PV +LQ L NN+ + + S + L +W+S G + +S L N +T
Sbjct: 319 DISPVSSLTKLQRLFFYNNK-----VSDVSSLANLTNINWLSA-GHNQISDLTPLAN-LT 371
Query: 464 KMKQI-----SWKN 472
++ Q+ +W N
Sbjct: 372 RITQLGLNDQAWTN 385
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114
+ L+NL + L FN+ ++ + P N T+ L L++S S ++ L L++L
Sbjct: 103 LANLTNLTGLTL-FNNQITDIDPLKNLTN-LNRLELSSNTISD--ISALSGLTSLQQLSF 158
Query: 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQFPD 173
S P L N+T L L +S S + L+NL L + + Q D
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI-------ATNNQISD 209
Query: 174 IMNL---TRISRLDISNNQLT--GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
I L T + L ++ NQL G++ S L NL L L NN +S P L L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 229 RDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV 288
++ L NQ++ +L L L N+L P I L NLTYL+L NN S I
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 289 EPYMLAKL 296
L KL
Sbjct: 322 PVSSLTKL 329
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 165/374 (44%), Gaps = 56/374 (14%)
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDIS 186
L VT L L KS G + L+ LT ++ +N P + NLT++ + ++
Sbjct: 40 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMN 93
Query: 187 NNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP 246
NNQ+ P + L NL L L+NN ++ P L L L ++LS N ++
Sbjct: 94 NNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
Query: 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLS---LASNNFSGIVEPYMLAKLVNLAALE 303
SL++L ++N++ P LANLT L ++SN S I +LAKL NL +L
Sbjct: 150 LTSLQQLNFSSNQVTDLKP-----LANLTTLERLDISSNKVSDI---SVLAKLTNLESLI 201
Query: 304 LSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID------ 357
++N +S T + ++ + LSL+ + + L LDL+ N I
Sbjct: 202 ATNNQISDITPLGILTNLDE---LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 358 ------------GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-WKNLKYLKLQSNLLQ 404
QI N G L+ L+L+ N + ++ I KNL YL L N +
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 318
Query: 405 GPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463
PV +LQ L NN+ + + S + L +W+S G + +S L N +T
Sbjct: 319 DISPVSSLTKLQRLFFYNNK-----VSDVSSLANLTNINWLSA-GHNQISDLTPLAN-LT 371
Query: 464 KMKQI-----SWKN 472
++ Q+ +W N
Sbjct: 372 RITQLGLNDQAWTN 385
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 110/248 (44%), Gaps = 27/248 (10%)
Query: 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114
+ L+NL + L FN+ ++ + P N T+ L L++S S ++ L L++L+
Sbjct: 103 LANLTNLTGLTL-FNNQITDIDPLKNLTN-LNRLELSSNTISD--ISALSGLTSLQQLNF 158
Query: 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQFPD 173
S P L N+T L L +S S + L+NL L + + Q D
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI-------ATNNQISD 209
Query: 174 IMNL---TRISRLDISNNQLT--GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
I L T + L ++ NQL G++ S L NL L L NN +S P L L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 229 RDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV 288
++ L NQ++ +L L L N+L P I L NLTYL+L NN S I
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 289 EPYMLAKL 296
L KL
Sbjct: 322 PVSSLTKL 329
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 34/194 (17%)
Query: 372 LSFLDLSHNFITEMKQIPWKNLKYLK---LQSNLLQGPLPVPP-PRLQFLLASNNQFTG- 426
L+ ++ S+N +T++ P KNL L + +N + P+ L L NNQ T
Sbjct: 65 LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 427 EIIQSICSSSTLEIPS-WISEI----GKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRS 480
+ ++++ + + LE+ S IS+I G SL LN S N +T +K ++ L LD+ S
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS 182
Query: 481 NLLQG-PLLVPPSSLRVILILNNQFTG--------------------EIIHSICDIIALD 519
N + +L ++L ++ NNQ + + I ++ + L
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 520 VLDLSNNRLSGTIP 533
LDL+NN++S P
Sbjct: 243 DLDLANNQISNLAP 256
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 164/374 (43%), Gaps = 57/374 (15%)
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDIS 186
L VT L L KS G + L+ LT ++ +N P + NLT++ + ++
Sbjct: 44 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMN 97
Query: 187 NNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP 246
NNQ+ P + L NL L L+NN ++ P L L L ++LS N ++
Sbjct: 98 NNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 153
Query: 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLS---LASNNFSGIVEPYMLAKLVNLAALE 303
SL++L G+ + + LANLT L ++SN S I +LAKL NL +L
Sbjct: 154 LTSLQQLSF------GNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLI 204
Query: 304 LSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID------ 357
++N +S T + ++ + LSL+ + + L LDL+ N I
Sbjct: 205 ATNNQISDITPLGILTNLDE---LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 261
Query: 358 ------------GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-WKNLKYLKLQSNLLQ 404
QI N G L+ L+L+ N + ++ I KNL YL L N +
Sbjct: 262 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 321
Query: 405 GPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463
PV +LQ L +NN+ + + S + L +W+S G + +S L N +T
Sbjct: 322 DISPVSSLTKLQRLFFANNK-----VSDVSSLANLTNINWLSA-GHNQISDLTPLAN-LT 374
Query: 464 KMKQI-----SWKN 472
++ Q+ +W N
Sbjct: 375 RITQLGLNDQAWTN 388
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 121/271 (44%), Gaps = 47/271 (17%)
Query: 54 NIFRLSNL-QMVRLKFNSN-LSGVFPRSNWTSPLRCLDVSG-TRFSGQLPD--SICNLRH 108
+I L NL ++V + N+N ++ + P +N T +++G T F+ Q+ D + NL +
Sbjct: 81 DITPLKNLTKLVDILMNNNQIADITPLANLT------NLTGLTLFNNQITDIDPLKNLTN 134
Query: 109 LRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN--- 165
L L LS ++L +T L LSF + + P L+NL L +D+ SN
Sbjct: 135 LNRLELSSNTISDI--SALSGLTSLQ--QLSFGNQVTDLKP-LANLTTLERLDISSNKVS 189
Query: 166 ---------------SFDGQFPDIMNL---TRISRLDISNNQLT--GSIPSHGSGLQNLA 205
+ + Q DI L T + L ++ NQL G++ S L NL
Sbjct: 190 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLT 245
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIP 265
L L NN +S P L L L ++ L NQ++ +L L L N+L P
Sbjct: 246 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 303
Query: 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
I L NLTYL+L NN S I L KL
Sbjct: 304 --ISNLKNLTYLTLYFNNISDISPVSSLTKL 332
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 151/332 (45%), Gaps = 38/332 (11%)
Query: 151 LSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
L NL +L D+ + +N P + NLT ++ L + NNQ+T P L NL L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE 270
+NT+S S L L L+ ++ NQ+T +L +L +++N++ S I
Sbjct: 138 SNTISDI--SALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKV-----SDISV 189
Query: 271 LANLTYLS--LASNNFSGIVEPYMLAKLVNLAALELSHNSL-SFGTTSKVNSSFPQIFIL 327
LA LT L +A+NN + P L L NL L L+ N L GT +S + L
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDL 243
Query: 328 SLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ 387
L+ IS +L L L N QI N G L+ L+L+ N + ++
Sbjct: 244 DLANNQISNLAPLSGLTKLTELKLGAN----QISNISPLAGLTALTNLELNENQLEDISP 299
Query: 388 IP-WKNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
I KNL YL L N + PV +LQ L SNN+ + + S + L +W+S
Sbjct: 300 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK-----VSDVSSLANLTNINWLS 354
Query: 446 EIGKDSLSYLNLSHNFITKMKQI-----SWKN 472
G + +S L N +T++ Q+ +W N
Sbjct: 355 A-GHNQISDLTPLAN-LTRITQLGLNDQAWTN 384
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 108/250 (43%), Gaps = 32/250 (12%)
Query: 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114
+ L+NL + L FN+ ++ + P N T+ L L++S S I L L L
Sbjct: 103 LANLTNLTGLTL-FNNQITDIDPLKNLTN-LNRLELSSNTIS-----DISALSGLTSLQ- 154
Query: 115 SQCNFYGFLP--ASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQF 171
Q NF + L N+T L L +S S + L+NL L + + Q
Sbjct: 155 -QLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI-------ATNNQI 206
Query: 172 PDIMNL---TRISRLDISNNQLT--GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
DI L T + L ++ NQL G++ S L NL L L NN +S P L L
Sbjct: 207 SDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLT 260
Query: 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG 286
L ++ L NQ++ +L L L N+L P I L NLTYL+L NN S
Sbjct: 261 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 318
Query: 287 IVEPYMLAKL 296
I L KL
Sbjct: 319 ISPVSSLTKL 328
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 163/374 (43%), Gaps = 57/374 (15%)
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDIS 186
L VT L L KS G + L+ LT ++ +N P + NLT++ + ++
Sbjct: 40 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMN 93
Query: 187 NNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP 246
NNQ+ P + L NL L L+NN ++ P L L L ++LS N ++
Sbjct: 94 NNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
Query: 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLS---LASNNFSGIVEPYMLAKLVNLAALE 303
SL++L G+ + + LANLT L ++SN S I +LAKL NL +L
Sbjct: 150 LTSLQQLNF------GNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLI 200
Query: 304 LSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID------ 357
++N +S T + ++ + LSL+ + + L LDL+ N I
Sbjct: 201 ATNNQISDITPLGILTNLDE---LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 257
Query: 358 ------------GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-WKNLKYLKLQSNLLQ 404
QI N G L+ L+L+ N + ++ I KNL YL L N +
Sbjct: 258 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 317
Query: 405 GPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463
PV +LQ L NN+ + + S + L +W+S G + +S L N +T
Sbjct: 318 DISPVSSLTKLQRLFFYNNK-----VSDVSSLANLTNINWLSA-GHNQISDLTPLAN-LT 370
Query: 464 KMKQI-----SWKN 472
++ Q+ +W N
Sbjct: 371 RITQLGLNDQAWTN 384
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 108/250 (43%), Gaps = 32/250 (12%)
Query: 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114
+ L+NL + L FN+ ++ + P N T+ L L++S S I L L L
Sbjct: 103 LANLTNLTGLTL-FNNQITDIDPLKNLTN-LNRLELSSNTIS-----DISALSGLTSLQ- 154
Query: 115 SQCNFYGFLP--ASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQF 171
Q NF + L N+T L L +S S + L+NL L + + Q
Sbjct: 155 -QLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI-------ATNNQI 206
Query: 172 PDIMNL---TRISRLDISNNQLT--GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
DI L T + L ++ NQL G++ S L NL L L NN +S P L L
Sbjct: 207 SDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLT 260
Query: 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG 286
L ++ L NQ++ +L L L N+L P I L NLTYL+L NN S
Sbjct: 261 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 318
Query: 287 IVEPYMLAKL 296
I L KL
Sbjct: 319 ISPVSSLTKL 328
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 163/374 (43%), Gaps = 57/374 (15%)
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDIS 186
L VT L L KS G + L+ LT ++ +N P + NLT++ + ++
Sbjct: 45 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMN 98
Query: 187 NNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP 246
NNQ+ P + L NL L L+NN ++ P L L L ++LS N ++
Sbjct: 99 NNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 154
Query: 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLS---LASNNFSGIVEPYMLAKLVNLAALE 303
SL++L G+ + + LANLT L ++SN S I +LAKL NL +L
Sbjct: 155 LTSLQQLSF------GNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLI 205
Query: 304 LSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID------ 357
++N +S T + ++ + LSL+ + + L LDL+ N I
Sbjct: 206 ATNNQISDITPLGILTNLDE---LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 262
Query: 358 ------------GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-WKNLKYLKLQSNLLQ 404
QI N G L+ L+L+ N + ++ I KNL YL L N +
Sbjct: 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 322
Query: 405 GPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463
PV +LQ L NN+ + + S + L +W+S G + +S L N +T
Sbjct: 323 DISPVSSLTKLQRLFFYNNK-----VSDVSSLANLTNINWLSA-GHNQISDLTPLAN-LT 375
Query: 464 KMKQI-----SWKN 472
++ Q+ +W N
Sbjct: 376 RITQLGLNDQAWTN 389
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 121/271 (44%), Gaps = 47/271 (17%)
Query: 54 NIFRLSNL-QMVRLKFNSN-LSGVFPRSNWTSPLRCLDVSG-TRFSGQLPD--SICNLRH 108
+I L NL ++V + N+N ++ + P +N T +++G T F+ Q+ D + NL +
Sbjct: 82 DITPLKNLTKLVDILMNNNQIADITPLANLT------NLTGLTLFNNQITDIDPLKNLTN 135
Query: 109 LRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN--- 165
L L LS ++L +T L LSF + + P L+NL L +D+ SN
Sbjct: 136 LNRLELSSNTISDI--SALSGLTSLQ--QLSFGNQVTDLKP-LANLTTLERLDISSNKVS 190
Query: 166 ---------------SFDGQFPDIMNL---TRISRLDISNNQLT--GSIPSHGSGLQNLA 205
+ + Q DI L T + L ++ NQL G++ S L NL
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLT 246
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIP 265
L L NN +S P L L L ++ L NQ++ +L L L N+L P
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 304
Query: 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
I L NLTYL+L NN S I L KL
Sbjct: 305 --ISNLKNLTYLTLYFNNISDISPVSSLTKL 333
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 31/211 (14%)
Query: 105 NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQLTDVDLG 163
NLRHL+ L+LS G + QL +L ++F P S NLH L
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLR----- 427
Query: 164 SNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF 223
++NL+ LD SN L +GLQ+L L L N+ S
Sbjct: 428 ----------VLNLSHC-LLDTSNQHLL-------AGLQDLRHLNLQGNSFQDGSISKTN 469
Query: 224 TLPLLRDIDL----SDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLS 278
L ++ +++ S N L+ AF +++ L L++N L G ++ L L YL+
Sbjct: 470 LLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLN 528
Query: 279 LASNNFSGIVEPYMLAKLVNLAALELSHNSL 309
+ASNN I+ P++L L + + LSHN L
Sbjct: 529 MASNNIR-IIPPHLLPALSQQSIINLSHNPL 558
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 146/362 (40%), Gaps = 52/362 (14%)
Query: 101 DSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDV 160
+ +C++ + ++L + F ++ T++ L L+ +G +P + ++ L +
Sbjct: 248 EGLCDMS-VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKL 305
Query: 161 DLGSNSFD-------GQFPDIMNL---TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
L +NSFD FP + +L + +LD+ L L+NL L L
Sbjct: 306 VLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCL--------EKLENLQKLDLS 357
Query: 211 NNTL--SGTIPSWLFTLPLLRDIDLSDNQLTGHLD-AFPS-KSLRKLYLTNNRLHGSIPS 266
++ + S L L L+ ++LS N+ G D AF L L + LH P
Sbjct: 358 HSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPH 417
Query: 267 SIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVN--SSFPQI 324
S F+ +L + S+ ++LA L +L L L NS G+ SK N +
Sbjct: 418 SPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSL 477
Query: 325 FILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITE 384
IL LS+CN+ + ID Q + + V + LDLSHN +T
Sbjct: 478 EILILSSCNLLS-------------------IDQQAFHGLRNV-----NHLDLSHNSLTG 513
Query: 385 MKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWI 444
+LK L L N+ + + PP L L+ + C+ S + +W
Sbjct: 514 DSMDALSHLKGLYL--NMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWY 571
Query: 445 SE 446
E
Sbjct: 572 KE 573
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 148/380 (38%), Gaps = 64/380 (16%)
Query: 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIP 148
D+ S + +C + + L+L + F + TQL L L+ G +P
Sbjct: 234 DIDDEDISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LP 291
Query: 149 PSLSNLHQLTDVDLGSNSFD-------GQFPDIMNL---TRISRLDISNNQLTGSIPSHG 198
+ L+ L + L N FD FP + +L + +L + G + G
Sbjct: 292 SGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLG----VGCLEKLG 347
Query: 199 SGLQNLAVLRLYNNTL--SGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLY 254
NL L L +N + S L L L+ ++LS N+ G AF L L
Sbjct: 348 ----NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Query: 255 LTNNRLHGSIPSSIF------ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
L RLH + P S F ++ NLTY L ++N ++LA L L L L N
Sbjct: 404 LAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSN------QHLLAGLPVLRHLNLKGNH 457
Query: 309 LSFGTTSKVN--SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWE 366
GT +K N + + +L LS+C + + ID Q
Sbjct: 458 FQDGTITKTNLLQTVGSLEVLILSSCGLLS-------------------IDQQA---FHS 495
Query: 367 VGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTG 426
+GK +S +DLSHN +T +LK + L NL + + PRL +L+ +
Sbjct: 496 LGK--MSHVDLSHNSLTCDSIDSLSHLKGIYL--NLAANSINIISPRLLPILSQQSTINL 551
Query: 427 EIIQSICSSSTLEIPSWISE 446
C+ S + +W E
Sbjct: 552 SHNPLDCTCSNIHFLTWYKE 571
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 199 SGLQ---NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYL 255
+G+Q NL L L +N +S P L L L ++ ++ N+L +L+ PS L +L+L
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFL 113
Query: 256 TNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
NN L + S+ L NL LS+ +N IV ML L L L+L N ++
Sbjct: 114 DNNELRDT--DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEIT 163
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
+L++L L N+L S+P +F+ L NLTYL+LA N + + + KL NL L+LS+N
Sbjct: 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYN 167
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNIDGQIP 361
L V Q+ L L + + P F R L Y+ L +N D P
Sbjct: 168 QLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSD 235
LT + L + NQL L NL L L +N L ++P +F L L ++DLS
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSY 166
Query: 236 NQLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASN 282
NQL + K L+ L L N+L S+P +F+ L +L Y+ L N
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD----GQFPDIMNLTRIS 181
L N+ +L ++ +S + L+NL T ++L N G F + NLT
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNL---TYLNLAHNQLQSLPKGVFDKLTNLTE-- 161
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDN 236
LD+S NQL L L LRLY N L ++P +F L L+ I L DN
Sbjct: 162 -LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-LPDSICNLRHLRELHLSQCNFYGF 122
R+ FN G+F N S L L ++G F LPD LR+L L LSQC
Sbjct: 433 TRVAFN----GIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 123 LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISR 182
P + +++ L VL+++ L L + L +N +D P I L+R
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW-- 543
Query: 183 LDISNNQLTGSIPSHGSG 200
L+ ++ + GS GSG
Sbjct: 544 LNKNSQKEQGSAKCSGSG 561
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 101/232 (43%), Gaps = 36/232 (15%)
Query: 45 CRIQGEFPENIFRLSNLQMVRLKFNSNLSG-VFPRSNWTSPLRCLDVS--GTRFSGQLPD 101
C+ G+FP +L +L+ RL F SN G F + S L LD+S G F G
Sbjct: 314 CKF-GQFP--TLKLKSLK--RLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQ 367
Query: 102 SICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161
S L+ L LS F G + S N L L H+ SNL Q++
Sbjct: 368 SDFGTTSLKYLDLS---FNGVITMS-SNFLGLEQLE--------HLDFQHSNLKQMS--- 412
Query: 162 LGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSW 221
+F ++L + LDIS+ + +GL +L VL++ N+
Sbjct: 413 --------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 222 LFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE 270
+FT L L +DLS QL AF S SL+ L + +N+L S+P IF+
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFD 515
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 52 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 103
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+NN
Sbjct: 104 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 162 TELPA-GLLNGLENLDTLLLQENSL 185
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQ 89
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 90 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 149
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++N LT G L+ ++L L L N L+ +IP F
Sbjct: 150 KLEKLSLANNNLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 193
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+NN
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++N LT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN-QL-- 238
R+ + N+++ + +NL +L L++N L+ + L LL +DLSDN QL
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 239 -------------TGHLDAFPSK-----------SLRKLYLTNNRLHGSIPSSIF-ELAN 273
T HLD + +L+ LYL +N L ++P F +L N
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN 153
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
LT+L L N S + E L +L L L N ++ ++ L L A N
Sbjct: 154 LTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANN 211
Query: 334 ISAFPSF----LRSLELAYLDLSENN--IDGQI-PNWMW 365
+SA P+ LR+L+ YL L++N D + P W W
Sbjct: 212 LSALPTEALAPLRALQ--YLRLNDNPWVCDCRARPLWAW 248
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 174/433 (40%), Gaps = 75/433 (17%)
Query: 87 CLDVSGTRFSGQLPDSIC--NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
C + T+ LP +I NL H + L NF + +QL L + F + S
Sbjct: 11 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY--------SQLTSLDVGFNTIS 62
Query: 145 GHIPPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRL-----DISNNQLTGSIP 195
P L L ++L N D F NLT + + I NN
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-- 120
Query: 196 SHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG----HLDAFPSKSLR 251
+NL L L +N LS T L L+++ LS+N++ LD F + SL+
Sbjct: 121 ------KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174
Query: 252 KLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
KL L++N++ P + L L L + + + +L N + LS ++
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234
Query: 312 GTTSKVNSSF-------PQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWM 364
TTS N++F + LS + N+ SF +L Y L NNI + +
Sbjct: 235 STTS--NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 365 WEVGKDTLSFLDLSHNFITE---MKQIP--------W-KNLKYLKLQSNLLQGPLPVPPP 412
G + +L+L +F + + +P W K L++L ++ N + G
Sbjct: 293 H--GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG------- 343
Query: 413 RLQFLLASNNQFTGEI-------IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465
+N FTG I S S TL +++S + L LNL+ N I+K+
Sbjct: 344 ------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS-LAHSPLHILNLTKNKISKI 396
Query: 466 KQISWKNLGYLDL 478
+ ++ LG+L++
Sbjct: 397 ESDAFSWLGHLEV 409
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 21/260 (8%)
Query: 232 DLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY 291
D S +LT D P+ ++ L LT+N+L ++ + LT L + N S + EP
Sbjct: 10 DCSHLKLTQVPDDLPT-NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPE 67
Query: 292 MLAKLVNLAALELSHNSLS--FGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYL 349
+ KL L L L HN LS T ++ ++ ++S S I P F++ L L
Sbjct: 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVKQKNLITL 126
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQ 404
DLS N + +V + L L LS+N I +K +LK L+L SN ++
Sbjct: 127 DLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Query: 405 GPLP---VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF 461
P RL L +N Q + + +C LE+ + + I SLS LS
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELAN--TSIRNLSLSNSQLSTTS 238
Query: 462 ITKMKQISWKNLGYLDLRSN 481
T + W NL LDL N
Sbjct: 239 NTTFLGLKWTNLTMLDLSYN 258
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 38/198 (19%)
Query: 202 QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN-QLT----------GHLDAF----- 245
+NL +L L++N L+G + L LL +DLSDN QL GHL
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 246 ------PS-----KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
P +L+ LYL +N L ++ +L NLT+L L N + E +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPE-HAFR 173
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF----LRSLELAYLD 350
L +L L L N ++ ++ L L A N+S P+ LRSL+ YL
Sbjct: 174 GLHSLDRLLLHQNHVA-RVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQ--YLR 230
Query: 351 LSENN--IDGQI-PNWMW 365
L++N D + P W W
Sbjct: 231 LNDNPWVCDCRARPLWAW 248
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 242 LDAFPS---KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLV 297
L A P+ S ++++L NR+ +P++ F+ NLT L L SN +GI + L
Sbjct: 22 LQAVPTGIPASSQRIFLHGNRI-SYVPAASFQSCRNLTILWLHSNALAGI-DAAAFTGLT 79
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF-PSFLRSL-ELAYLDLSENN 355
L L+LS N+ + L L C + P R L L YL L +NN
Sbjct: 80 LLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNN 139
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYL 396
+ N ++G L+ L L N I + + ++ L L
Sbjct: 140 LQALPDNTFRDLGN--LTHLFLHGNRIPSVPEHAFRGLHSL 178
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 7/192 (3%)
Query: 100 PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTD 159
P + L HL LHL +C P + L L L + + +L LT
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 160 VDLGSNSFDGQFPD--IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217
+ L N P+ L + RL + N + P L L L L+ N LS
Sbjct: 157 LFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
Query: 218 IPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKS-LRKLYLTNNRLHGSIPSSIFELANLTY 276
L L L+ + L+DN A P + L+K +++ + ++P LA
Sbjct: 216 PAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQ---RLAGRDL 272
Query: 277 LSLASNNFSGIV 288
LA+++ G
Sbjct: 273 KRLAASDLEGCA 284
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+NN
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++N LT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN-QL-- 238
R+ + N+++ + +NL +L L++N L+ + L LL +DLSDN QL
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 239 -------------TGHLDAFPSK-----------SLRKLYLTNNRLHGSIPSSIF-ELAN 273
T HLD + +L+ LYL +N L ++P F +L N
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN 154
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
LT+L L N S + E L +L L L N ++ ++ L L A N
Sbjct: 155 LTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANN 212
Query: 334 ISAFPSF----LRSLELAYLDLSENN--IDGQI-PNWMW 365
+SA P+ LR+L+ YL L++N D + P W W
Sbjct: 213 LSALPTEALAPLRALQ--YLRLNDNPWVCDCRARPLWAW 249
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+NN
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++N LT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 98/241 (40%), Gaps = 30/241 (12%)
Query: 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG 145
R LD+ R D + HL EL L++ P + N+ L L L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 146 HIPPSLSNLHQLTDVDLGSNS----FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGL 201
+ L LT +D+ N D F D+ NL L++ +N L SGL
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL---KSLEVGDNDLVYISHRAFSGL 151
Query: 202 QNLAVLRLYNNTLSGTIP----SWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTN 257
+L L L L+ +IP S L L +LR L+ ++A S ++LY
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN-------INAIRDYSFKRLYRLK 203
Query: 258 -------NRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK-LVNLAALELSHNSL 309
L P+ ++ L NLT LS+ N + + PY+ + LV L L LS+N +
Sbjct: 204 VLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAV--PYLAVRHLVYLRFLNLSYNPI 260
Query: 310 S 310
S
Sbjct: 261 S 261
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+NN
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++N LT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 174/433 (40%), Gaps = 75/433 (17%)
Query: 87 CLDVSGTRFSGQLPDSIC--NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
C + T+ LP +I NL H + L NF + +QL L + F + S
Sbjct: 16 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY--------SQLTSLDVGFNTIS 67
Query: 145 GHIPPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRL-----DISNNQLTGSIP 195
P L L ++L N D F NLT + + I NN
Sbjct: 68 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-- 125
Query: 196 SHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG----HLDAFPSKSLR 251
+NL L L +N LS T L L+++ LS+N++ LD F + SL+
Sbjct: 126 ------KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 179
Query: 252 KLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
KL L++N++ P + L L L + + + +L N + LS ++
Sbjct: 180 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 239
Query: 312 GTTSKVNSSF-------PQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWM 364
TTS N++F + LS + N+ SF +L Y L NNI + +
Sbjct: 240 STTS--NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 297
Query: 365 WEVGKDTLSFLDLSHNFITE---MKQIP--------W-KNLKYLKLQSNLLQGPLPVPPP 412
G + +L+L +F + + +P W K L++L ++ N + G
Sbjct: 298 H--GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG------- 348
Query: 413 RLQFLLASNNQFTGEI-------IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465
+N FTG I S S TL +++S + L LNL+ N I+K+
Sbjct: 349 ------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS-LAHSPLHILNLTKNKISKI 401
Query: 466 KQISWKNLGYLDL 478
+ ++ LG+L++
Sbjct: 402 ESDAFSWLGHLEV 414
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 21/260 (8%)
Query: 232 DLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY 291
D S +LT D P+ ++ L LT+N+L ++ + LT L + N S + EP
Sbjct: 15 DCSHLKLTQVPDDLPT-NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPE 72
Query: 292 MLAKLVNLAALELSHNSLS--FGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYL 349
+ KL L L L HN LS T ++ ++ ++S S I P F++ L L
Sbjct: 73 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVKQKNLITL 131
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQ 404
DLS N + +V + L L LS+N I +K +LK L+L SN ++
Sbjct: 132 DLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 189
Query: 405 GPLP---VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF 461
P RL L +N Q + + +C LE+ + + I SLS LS
Sbjct: 190 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELAN--TSIRNLSLSNSQLSTTS 243
Query: 462 ITKMKQISWKNLGYLDLRSN 481
T + W NL LDL N
Sbjct: 244 NTTFLGLKWTNLTMLDLSYN 263
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 174/433 (40%), Gaps = 75/433 (17%)
Query: 87 CLDVSGTRFSGQLPDSIC--NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
C + T+ LP +I NL H + L NF + +QL L + F + S
Sbjct: 21 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY--------SQLTSLDVGFNTIS 72
Query: 145 GHIPPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRL-----DISNNQLTGSIP 195
P L L ++L N D F NLT + + I NN
Sbjct: 73 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-- 130
Query: 196 SHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG----HLDAFPSKSLR 251
+NL L L +N LS T L L+++ LS+N++ LD F + SL+
Sbjct: 131 ------KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 184
Query: 252 KLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
KL L++N++ P + L L L + + + +L N + LS ++
Sbjct: 185 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 244
Query: 312 GTTSKVNSSF-------PQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWM 364
TTS N++F + LS + N+ SF +L Y L NNI + +
Sbjct: 245 STTS--NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 302
Query: 365 WEVGKDTLSFLDLSHNFITE---MKQIP--------W-KNLKYLKLQSNLLQGPLPVPPP 412
G + +L+L +F + + +P W K L++L ++ N + G
Sbjct: 303 H--GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG------- 353
Query: 413 RLQFLLASNNQFTGEI-------IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465
+N FTG I S S TL +++S + L LNL+ N I+K+
Sbjct: 354 ------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS-LAHSPLHILNLTKNKISKI 406
Query: 466 KQISWKNLGYLDL 478
+ ++ LG+L++
Sbjct: 407 ESDAFSWLGHLEV 419
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 21/260 (8%)
Query: 232 DLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY 291
D S +LT D P+ ++ L LT+N+L ++ + LT L + N S + EP
Sbjct: 20 DCSHLKLTQVPDDLPT-NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPE 77
Query: 292 MLAKLVNLAALELSHNSLS--FGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYL 349
+ KL L L L HN LS T ++ ++ ++S S I P F++ L L
Sbjct: 78 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVKQKNLITL 136
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQ 404
DLS N + +V + L L LS+N I +K +LK L+L SN ++
Sbjct: 137 DLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 194
Query: 405 GPLP---VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF 461
P RL L +N Q + + +C LE+ + + I SLS LS
Sbjct: 195 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELAN--TSIRNLSLSNSQLSTTS 248
Query: 462 ITKMKQISWKNLGYLDLRSN 481
T + W NL LDL N
Sbjct: 249 NTTFLGLKWTNLTMLDLSYN 268
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 157 LTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG 216
L D +LG S DG F + +L + L++ NQLTG P+ G ++ L+L N +
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVK---LELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 217 TIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTY 276
L L+ ++L DNQ++ +P S L +LT
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQIS----------------------CVMPGSFEHLNSLTS 130
Query: 277 LSLASNNFS 285
L+LASN F+
Sbjct: 131 LNLASNPFN 139
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 21/240 (8%)
Query: 54 NIFRLSNLQMVRLKF--NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRE 111
+I L NL +R + N+S + P +N T + S P + N L
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSP--LSNXTGLNY 159
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIP-PSLSNLHQLTDVDLGSNSFDGQ 170
L +++ P + N+T L LSL++ P SL++LH T ++ Q
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFT-------AYVNQ 210
Query: 171 FPDI---MNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL 227
DI N TR++ L I NN++T P + L L L + N +S + + L
Sbjct: 211 ITDITPVANXTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISDI--NAVKDLTK 266
Query: 228 LRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
L+ +++ NQ++ L L+L NN+L I L NLT L L+ N+ + I
Sbjct: 267 LKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 46/197 (23%)
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL 123
+ L N NLS + P SN T L L V+ ++ P I NL L L L+
Sbjct: 137 LNLGANHNLSDLSPLSNXTG-LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193
Query: 124 P-ASL-------------------GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163
P ASL N T+L L + + P L+NL QLT +++G
Sbjct: 194 PLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251
Query: 164 SNSFD------------------GQFPDIM---NLTRISRLDISNNQLTGSIPSHGSGLQ 202
+N Q DI NL++++ L ++NNQL GL
Sbjct: 252 TNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLT 311
Query: 203 NLAVLRLYNNTLSGTIP 219
NL L L N ++ P
Sbjct: 312 NLTTLFLSQNHITDIRP 328
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+N+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++N LT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNDLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+N
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++NQLT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+N
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++NQLT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 181 SRLDISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQL 238
+LD+ +N+L+ S+PS L L +L L +N L T+P+ +F L L + ++DN+L
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 239 T----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYML 293
G D + L +L L N+L S+P +F+ L LTYLSL N + + +
Sbjct: 98 QALPIGVFDQLVN--LAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKG-VF 153
Query: 294 AKLVNLAALELSHNSLS 310
KL +L L L +N L
Sbjct: 154 DKLTSLKELRLYNNQLK 170
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 79 SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA----SLGNVTQLA 134
SN + + LD+ + S + L LR L+L+ N LPA L N+ L
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLW 91
Query: 135 VLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMN-LTRISRLDISNNQLTGS 193
V ++ + L NL +L L N P + + LT+++ L + N+L
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 194 IPSHGSGLQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLT----GHLDAFPSK 248
L +L LRLYNN L +P F L L+ + L +NQL G D+ +
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL--E 205
Query: 249 SLRKLYLTNN 258
L+ L L N
Sbjct: 206 KLKMLQLQEN 215
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+N
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++NQLT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 20/145 (13%)
Query: 174 IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
+M TR+++L++ +LT G++P G+ L L +N L ++P TLP L
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGT-------LDLSHNQLQ-SLPLLGQTLPAL 102
Query: 229 RDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+D+S N+LT G L L++LYL N L P + L LSLA+N
Sbjct: 103 TVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 285 SGIVEPYMLAKLVNLAALELSHNSL 309
+ + +L L NL L L NSL
Sbjct: 161 TEL-PAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS-----GHIPPSLSNLHQLTDVDLGSNS 166
LHLS+ Y F A+L T+L L+L + G +P L +DL N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQ 88
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
L ++ LD+S N+LT GL L L L N L P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 227 LLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
L + L++NQLT G L+ ++L L L N L+ +IP F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGL--ENLDTLLLQENSLY-TIPKGFF 192
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 128/353 (36%), Gaps = 73/353 (20%)
Query: 216 GTIPSWLFTLPLLRDIDLSDNQL---------TGHLDAFPSKSLRKLYLTNNRLHGS--- 263
G +PS L +LP LR++ LSDN L G LD P L KL L RL +
Sbjct: 99 GVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLD--PQCHLEKLQLEYCRLTAASCE 156
Query: 264 -IPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322
+ S + L L++ SNN G +L + + +A +L L + N
Sbjct: 157 PLASVLRATRALKELTV-SNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCK-- 213
Query: 323 QIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPN-----------WMWEVGKDT 371
C I A + LR L+L L + I P W+WE
Sbjct: 214 -------DLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITA 266
Query: 372 LSFLDLSHNFITE--MKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEII 429
DL + +K++ K + LL L P +L+ L + T
Sbjct: 267 SGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACC 326
Query: 430 QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLV 489
Q + L L+ N Q+S LG ++ L L
Sbjct: 327 QHV---------------------SLMLTQNKHLLELQLSSNKLGDSGIQE--LCQALSQ 363
Query: 490 PPSSLRVILILNNQFTGEIIHSICDII----ALDVLDLSNNRLSGTIPKCIGN 538
P ++LRV+ + + + T S+ ++ +L LDLSNN C+G+
Sbjct: 364 PGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDLSNN--------CVGD 408
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTGH 241
L + +NQ+T P L NL L L +N L G +P +F +L L +DL NQLT
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-- 101
Query: 242 LDAFPSK------SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
PS L++L++ N+L +P I L +LT+L+L N I
Sbjct: 102 --VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSI 150
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-LPDSICNLRHLRELHLSQCNFYGF 122
R+ FN G+F N S L L ++G F LPD LR+L L LSQC
Sbjct: 457 TRVAFN----GIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 123 LPASLGNVTQLAVLSLSFKSF 143
P + +++ L VL++S +F
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 110/276 (39%), Gaps = 60/276 (21%)
Query: 45 CRIQGEFPENIFRLSNLQMVRLKFNSNLSG-VFPRSNWTSPLRCLDVS--GTRFSGQLPD 101
C+ G+FP +L +L+ RL F SN G F + S L LD+S G F G
Sbjct: 338 CKF-GQFP--TLKLKSLK--RLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQ 391
Query: 102 SICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161
S L+ L LS F G + S N L L H+ SNL Q++
Sbjct: 392 SDFGTISLKYLDLS---FNGVITMS-SNFLGLEQLE--------HLDFQHSNLKQMS--- 436
Query: 162 LGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSW 221
+F ++L + LDIS+ + +GL +L VL++ N+
Sbjct: 437 --------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 222 LFT-LPLLRDIDLSDNQLTG-----------------------HLDAFPSKSLRKLYLTN 257
+FT L L +DLS QL LD FP K L L + +
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Query: 258 NRLHGSIPSSIFEL----ANLTYLSLASNNFSGIVE 289
L+ + S EL ++L +L+L N+F+ E
Sbjct: 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-LPDSICNLRHLRELHLSQCNFYGF 122
R+ FN G+F N S L L ++G F LPD LR+L L LSQC
Sbjct: 433 TRVAFN----GIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 123 LPASLGNVTQLAVLSLSFKSF 143
P + +++ L VL++S +F
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNF 506
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 110/276 (39%), Gaps = 60/276 (21%)
Query: 45 CRIQGEFPENIFRLSNLQMVRLKFNSNLSG-VFPRSNWTSPLRCLDVS--GTRFSGQLPD 101
C+ G+FP +L +L+ RL F SN G F + S L LD+S G F G
Sbjct: 314 CKF-GQFP--TLKLKSLK--RLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQ 367
Query: 102 SICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161
S L+ L LS F G + S N L L H+ SNL Q++
Sbjct: 368 SDFGTTSLKYLDLS---FNGVITMS-SNFLGLEQLE--------HLDFQHSNLKQMS--- 412
Query: 162 LGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSW 221
+F ++L + LDIS+ + +GL +L VL++ N+
Sbjct: 413 --------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 222 LFT-LPLLRDIDLSDNQLTG-----------------------HLDAFPSKSLRKLYLTN 257
+FT L L +DLS QL LD FP K L L + +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524
Query: 258 NRLHGSIPSSIFEL----ANLTYLSLASNNFSGIVE 289
L+ + S EL ++L +L+L N+F+ E
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 12/193 (6%)
Query: 50 EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHL 109
+FP+ FRLS+LQ + + L + + L L ++ LP SI +L L
Sbjct: 95 QFPDQAFRLSHLQHXTIDA-AGLXELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRL 152
Query: 110 RELHLSQCNFYGFLPASLGN---------VTQLAVLSLSFKSFSGHIPPSLSNLHQLTDV 160
REL + C LP L + + L L L + +P S++NL L +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSL 211
Query: 161 DLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPS 220
+ ++ P I +L ++ LD+ + P G L L L + + T+P
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 221 WLFTLPLLRDIDL 233
+ L L +DL
Sbjct: 272 DIHRLTQLEKLDL 284
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-LPDSICNLRHLRELHLSQCNFYGF 122
R+ FN G+F N S L L ++G F LPD LR+L L LSQC
Sbjct: 138 TRVAFN----GIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 123 LPASLGNVTQLAVLSLSFKSF 143
P + +++ L VL++S +F
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNF 211
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 31/201 (15%)
Query: 119 FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD--GQFPDIMN 176
F G S T L L LSF + + L QL +D ++ +F ++
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSD 235
L + LDIS+ + +GL +L VL++ N+ +FT L L +DLS
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 236 NQLTG-----------------------HLDAFPSKSLRKLYLTNNRLHGSIPSSIFEL- 271
QL LD FP K L L + + L+ + S EL
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 272 ---ANLTYLSLASNNFSGIVE 289
++L +L+L N+F+ E
Sbjct: 245 HFPSSLAFLNLTQNDFACTCE 265
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 103/274 (37%), Gaps = 54/274 (19%)
Query: 263 SIPSSIFELANLTYLSLASNNFSGIVEPY-MLAKLVNLAALELSHNSLSFGTTSKVNSSF 321
S+P+ I A T L L SN + P+ + KL L L LS N LSF
Sbjct: 21 SVPTGIPSSA--TRLELESNKLQSL--PHGVFDKLTQLTKLSLSSNGLSFK--------- 67
Query: 322 PQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNF 381
C+ S F + L YLDLS N + N++ G + L LD H+
Sbjct: 68 --------GCCSQSDFGT----TSLKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSN 112
Query: 382 ITEMKQ----IPWKNLKYLKL---QSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSI-- 432
+ +M + + +NL YL + + + + L+ L + N F + I
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 433 ---------CSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWK---NLGYLDLRS 480
S LE S + SL LN+SHN + +K +L LD
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 481 NLL----QGPLLVPPSSLRVILILNNQFTGEIIH 510
N + + L PSSL + + N F H
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 230 DIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASN--NFSG 286
+I + LT PS + R L L +N+L S+P +F+ L LT LSL+SN +F G
Sbjct: 11 EIRCNSKGLTSVPTGIPSSATR-LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 287 IVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSF---PQIFILSLSACN---ISAFPSF 340
+ L + LSF ++S+F Q+ L N +S F F
Sbjct: 69 CCSQ------SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122
Query: 341 LRSLELAYLDLSENN 355
L L YLD+S +
Sbjct: 123 LSLRNLIYLDISHTH 137
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 81/208 (38%), Gaps = 61/208 (29%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
LD+ NN ++ GLQ+L L L NN +S H
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-----------------------HE 95
Query: 243 DAF-PSKSLRKLYLTNNRL---HGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVN 298
AF P + L+KLY++ N L ++PSS+ EL +N V + + L N
Sbjct: 96 KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR-------IHDNRIRKVPKGVFSGLRN 148
Query: 299 LAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDG 358
+ +E+ N L NS F P L+L YL +SE + G
Sbjct: 149 MNCIEMGGNPLE-------NSGFE---------------PGAFDGLKLNYLRISEAKLTG 186
Query: 359 QIPNWMWEVGKDTLSFLDLSHNFITEMK 386
IP + E TL+ L L HN I ++
Sbjct: 187 -IPKDLPE----TLNELHLDHNKIQAIE 209
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 249 SLRKLYLTNNRLHGSIPSSIF-ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
SL +LYL N+L S+P+ +F +L +LTYL+L++N + + KL L L L+ N
Sbjct: 53 SLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNG-VFDKLTQLKELALNTN 110
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNIDGQIP 361
L V Q+ L L + + P F R L Y+ L +N D P
Sbjct: 111 QLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 139/340 (40%), Gaps = 54/340 (15%)
Query: 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTI--PSWLFTLPLLRDIDL 233
NL + LD+ ++++ P GL +L LRLY LS + + L L +DL
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 234 SDNQLTGHLDAFPS----KSLRKLYLTNNRLHGSIPSSIFEL--ANLTYLSLASNNFSGI 287
S NQ+ L PS SL+ + ++N++ + L L++ SLA+N+
Sbjct: 131 SKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Query: 288 VEPYMLAKLVN------LAALELSHNSLSFGTTSKVNSSFP--QIFILSLSACNISAFPS 339
V K +N L L++S N + T +++ Q F L L+ + A
Sbjct: 190 VS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Query: 340 FLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKL- 398
F +NI N + + ++ LDLSH F+ + ++ LK LK+
Sbjct: 249 F-------------HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 399 -----QSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLS 453
+ N + LQ L S N ++ + SS+ +P ++
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYN-----LLGELYSSNFYGLP---------KVA 341
Query: 454 YLNLSHNFITKMKQISWK---NLGYLDLRSNLLQGPLLVP 490
Y++L N I ++ ++K L LDLR N L +P
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 132/345 (38%), Gaps = 78/345 (22%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL--PASLGNVTQLAVLSLSFKS 142
LR LD+ ++ PD+ L HL EL L C + N+ L L LS
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 143 F-SGHIPPSLSNLHQLTDVDLGSNS-----------FDGQFPDIMNL------TRISR-- 182
S ++ PS L+ L +D SN G+ +L +R+S
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194
Query: 183 --------------LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
LD+S N T I + S ++ + ++ L+ I F +
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA--ISKSQAFSLILAHHIMGAGFGFHNI 252
Query: 229 RDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHG---SIPSSIFE-LANLTYLSLASNNF 284
+D D N G S+R L L+ HG S+ S +FE L +L L+LA N
Sbjct: 253 KDPD--QNTFAG----LARSSVRHLDLS----HGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 285 SGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL 344
+ I + L NL L LS+N L L + N P
Sbjct: 303 NKIADEAFYG-LDNLQVLNLSYNLLG-----------------ELYSSNFYGLP------ 338
Query: 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389
++AY+DL +N+I I + ++ + L LDL N +T + IP
Sbjct: 339 KVAYIDLQKNHI-AIIQDQTFKF-LEKLQTLDLRDNALTTIHFIP 381
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 36/200 (18%)
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
+ I+ L++++NQL P++ + LA+L N++S P LPLL+ ++L N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 238 LTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV-EPYMLAKL 296
L+ D + NLT L L SN+ I P+ K
Sbjct: 85 LSQISD----------------------QTFVFCTNLTELDLMSNSIHKIKSNPFKNQK- 121
Query: 297 VNLAALELSHNSLS---FGT----TSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYL 349
NL L+LSHN LS GT + + IL+L + + FL + L L
Sbjct: 122 -NLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEEL----EFLGNSSLRKL 176
Query: 350 DLSENNIDGQIPNWMWEVGK 369
DLS N + P +GK
Sbjct: 177 DLSSNPLKEFSPGCFQTIGK 196
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 250 LRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309
LR++ L N + PS L NLT L L++NN + I E +L L NL L+ HN+L
Sbjct: 461 LRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANINED-LLEGLENLEILDFQHNNL 516
Query: 310 SFGTTSKVNSSFPQIFILSLSACNI 334
+ + N P F+ LS +I
Sbjct: 517 A-RLWKRANPGGPVNFLKGLSHLHI 540
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSD 235
LT + L + NQL L NL L LY+N L ++P +F L L +DL +
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDN 166
Query: 236 NQLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASN 282
NQL + K L++L L +N+L S+P +F+ L +LT++ L +N
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
+L++L L N+L S+P +F+ L NLTYL L N + + + KL NL L+L +N
Sbjct: 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKG-VFDKLTNLTRLDLDNN 167
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPS 339
L V Q+ LSL+ + + P
Sbjct: 168 QLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 180 ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239
+ LD S+N + G L +L+L +N L+ T +WL P L ++DLS N+L
Sbjct: 207 VEELDASHNSINVV---RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261
Query: 240 G--HLDAFPSKSLRKLYLTNNRL 260
+ + L +LY++NNRL
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRL 284
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 50/229 (21%)
Query: 204 LAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTG-HLDAF-PSKSLRKLYLTNNRL 260
L VL L N LS ++P +F P L + +S+N L D F + SL+ L L++NRL
Sbjct: 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 261 HG---SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL---------------VNLAAL 302
S+ S+F AN++Y N S + P + +L V L L
Sbjct: 178 THVDLSLIPSLFH-ANVSY-----NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231
Query: 303 ELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA--FPSFLRSLELAYLDLSEN-----N 355
+L HN+L+ T +N +P + + LS + + F++ L L +S N N
Sbjct: 232 KLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 356 IDGQ-IPNWMWEVGKDTLSFLDLSHNFI--TEMKQIPWKNLKYLKLQSN 401
+ GQ IP TL LDLSHN + E Q + L+ L L N
Sbjct: 289 LYGQPIP---------TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 204 LAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG--HLDAFPSKSLRKLYLTNNRL 260
L +L+L +N L+ T +WL P L ++DLS N+L + + L +LY++NNRL
Sbjct: 234 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 50/229 (21%)
Query: 204 LAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTG-HLDAF-PSKSLRKLYLTNNRL 260
L VL L N LS ++P +F P L + +S+N L D F + SL+ L L++NRL
Sbjct: 125 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 261 HG---SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL---------------VNLAAL 302
S+ S+F AN++Y N S + P + +L V L L
Sbjct: 184 THVDLSLIPSLFH-ANVSY-----NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237
Query: 303 ELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA--FPSFLRSLELAYLDLSEN-----N 355
+L HN+L+ T +N +P + + LS + + F++ L L +S N N
Sbjct: 238 KLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 356 IDGQ-IPNWMWEVGKDTLSFLDLSHNFI--TEMKQIPWKNLKYLKLQSN 401
+ GQ IP TL LDLSHN + E Q + L+ L L N
Sbjct: 295 LYGQPIP---------TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 228 LRDIDLSDNQLT--GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFS 285
++++DLS N L+ D P L L L++N L+ ++ + L+ L L L +N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNN--- 90
Query: 286 GIVEPYMLAKLV--NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRS 343
Y+ LV ++ L ++N++S + S+ I++ + + RS
Sbjct: 91 -----YVQELLVGPSIETLHAANNNISRVSCSRGQGK-KNIYLANNKITMLRDLDEGCRS 144
Query: 344 LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK-QIPWKNLKYLKLQSNL 402
+ YLDL N ID + DTL L+L +NFI ++K Q+ + LK L L SN
Sbjct: 145 -RVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202
Query: 403 LQ--GP 406
L GP
Sbjct: 203 LAFMGP 208
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 450 DSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQ--GPLLVPPSSLRVILILNNQF 504
D+L +LNL +NFI +K Q+ + L LDL SN L GP + + I + NN+
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
LD+ NN++T L+NL L L NN +S P L L + LS NQL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASN 282
+ P K+L++L + N + S L + + L +N
Sbjct: 117 EKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 56/144 (38%), Gaps = 30/144 (20%)
Query: 73 SGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQ 132
+G F S +R D + T LP S L ELHL ASL +
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPS------LTELHLDGNKITKVDAASLKGLNN 217
Query: 133 LAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTG 192
LA L LSF S S VD GS + N + L ++NN+L
Sbjct: 218 LAKLGLSFNSISA--------------VDNGS---------LANTPHLRELHLNNNKLV- 253
Query: 193 SIPSHGSGLQNLAVLRLYNNTLSG 216
+P + + + V+ L+NN +S
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISA 277
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 154 LHQLTDVDLGSNSF------DGQFPDIMNLTRI------------------SRLDISNNQ 189
L+Q+ V+LG+N +G F + L+ I + L + N+
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-K 248
+T + GL NLA L L N++S L P LR++ L++N+L K
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263
Query: 249 SLRKLYLTNNRL 260
++ +YL NN +
Sbjct: 264 YIQVVYLHNNNI 275
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSD 235
LT+++ L++ NQL L L L L NN L+ ++P +F L L + L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 236 NQL----TGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGI 287
NQL +G D L++L L N+L SIP+ F+ L NL LSL++N +
Sbjct: 117 NQLKSLPSGVFDRLTK--LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
LD+ NN++T L+NL L L NN +S P L L + LS NQL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASN 282
+ P K+L++L + N + S L + + L +N
Sbjct: 117 EKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 56/144 (38%), Gaps = 30/144 (20%)
Query: 73 SGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQ 132
+G F S +R D + T LP S L ELHL ASL +
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPS------LTELHLDGNKITKVDAASLKGLNN 217
Query: 133 LAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTG 192
LA L LSF S S VD GS + N + L ++NN+L
Sbjct: 218 LAKLGLSFNSISA--------------VDNGS---------LANTPHLRELHLNNNKLV- 253
Query: 193 SIPSHGSGLQNLAVLRLYNNTLSG 216
+P + + + V+ L+NN +S
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISA 277
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 154 LHQLTDVDLGSNSF------DGQFPDIMNLTRI------------------SRLDISNNQ 189
L+Q+ V+LG+N +G F + L+ I + L + N+
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-K 248
+T + GL NLA L L N++S L P LR++ L++N+L K
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263
Query: 249 SLRKLYLTNNRL 260
++ +YL NN +
Sbjct: 264 YIQVVYLHNNNI 275
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSD 235
LT+++ L++ NQL L L L L NN L+ ++P +F L L + L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 236 NQL----TGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGI 287
NQL +G D L++L L N+L SIP+ F+ L NL LSL++N +
Sbjct: 117 NQLKSLPSGVFDRLTK--LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK-QIPWKNLKYLKLQSNLLQ 404
+ YLDL N ID + DTL L+L +NFI ++K Q+ + LK L L SN L
Sbjct: 146 VQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 405 --GP 406
GP
Sbjct: 205 FMGP 208
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 450 DSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQ--GPLLVPPSSLRVILILNNQF 504
D+L +LNL +NFI +K Q+ + L LDL SN L GP + + I + NN+
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDN 236
T RL ++NNQ+T P L NL L +N L+ IP+ +F L L +DL+DN
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN 91
Query: 237 QLTGHLDAFPS------KSLRKLYLTNN 258
HL + P KSL +YL NN
Sbjct: 92 ----HLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 56/205 (27%)
Query: 372 LSFLDLSHNFITEMKQIPWKN-LKYLKLQSNLLQGPLPVPPPRLQFLLASNNQ------- 423
L +L +S+N + ++ ++ + LK + + +N L+ LP PP L+F+ A NNQ
Sbjct: 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPEL 191
Query: 424 ----FTGEI----------------IQSICSSSTL--EIPS-----WISEIGKD------ 450
F I ++SI + + + E+P +++ I D
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251
Query: 451 ------SLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQF 504
SL LN+ N++T + ++ ++L +LD+ N+ G +PP+ L N
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLPELP-QSLTFLDVSENIFSGLSELPPN-----LYYLNAS 305
Query: 505 TGEIIHSICDI-IALDVLDLSNNRL 528
+ E I S+CD+ +L+ L++SNN+L
Sbjct: 306 SNE-IRSLCDLPPSLEELNVSNNKL 329
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 131/307 (42%), Gaps = 60/307 (19%)
Query: 125 ASLGNVTQLAVLSLSFKSF--SGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISR 182
AS ++T+L L S KS + +LS+L L + SN+ + P++ N + +
Sbjct: 98 ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI 157
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
+D+ NN L +P L+ +A NN L +P L LP L I +DN L
Sbjct: 158 IDVDNNSL-KKLPDLPPSLEFIAA---GNNQLE-ELPE-LQNLPFLTAI-YADNNSLKKL 210
Query: 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLS--LASNNFSGIVEPYMLAKLVNLA 300
P SL + NN L + EL NL +L+ A NN +L L +L
Sbjct: 211 PDLP-LSLESIVAGNNILE-----ELPELQNLPFLTTIYADNN--------LLKTLPDLP 256
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDG-- 358
P + L++ ++ P +SL +LD+SEN G
Sbjct: 257 ---------------------PSLEALNVRDNYLTDLPELPQSL--TFLDVSENIFSGLS 293
Query: 359 QIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLL 418
++P ++ +L+ S N I + +P +L+ L + +N L LP PPRL+ L+
Sbjct: 294 ELPPNLY--------YLNASSNEIRSLCDLP-PSLEELNVSNNKLIE-LPALPPRLERLI 343
Query: 419 ASNNQFT 425
AS N
Sbjct: 344 ASFNHLA 350
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 202 QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNR 259
+ + +RL NT+ P LR IDLS+NQ++ DAF +SL L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 260 LHGSIPSSIFE 270
+ +P S+FE
Sbjct: 92 I-TELPKSLFE 101
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 157 LTDVDLGSNSFDGQFPDIMN-LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215
+T++ L N+ P + ++ R+D+SNNQ++ P GL++L L LY N ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 216 GTIPSWLF 223
+P LF
Sbjct: 94 -ELPKSLF 100
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 202 QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNR 259
+ + +RL NT+ P LR IDLS+NQ++ DAF +SL L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 260 LHGSIPSSIFE 270
+ +P S+FE
Sbjct: 92 I-TELPKSLFE 101
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 157 LTDVDLGSNSFDGQFPDIMN-LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215
+T++ L N+ P + ++ R+D+SNNQ++ P GL++L L LY N ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 216 GTIPSWLF 223
+P LF
Sbjct: 94 -ELPKSLF 100
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 217 TIPSWLFTLPLLRDIDLSDNQLT--GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANL 274
+IPS L ++ +DLS N++T GH D +L+ L L ++R++ + + L +L
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL-SLSACN 333
+L L+ N+ S + + L +L L L N T V S FP + L +L N
Sbjct: 77 EHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQ---TLGVTSLFPNLTNLQTLRIGN 132
Query: 334 ISAFPSFLRSLELAYL-DLSENNIDG-QIPNWMWEVGKDTLSFLDLSH--------NFIT 383
+ F S +R ++ A L L+E I + N+ + K S D+ H F+
Sbjct: 133 VETF-SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK---SIRDIHHLTLHLSESAFLL 188
Query: 384 EMKQIPWKNLKYLKLQ-SNLLQ---GPLPV-----PPPRLQF 416
E+ +++YL+L+ +NL + PLPV P +L F
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 183 LDISNNQLTGSIPSHGS--GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
LD+S N++T HG NL VL L ++ ++ ++L L +DLSDN L+
Sbjct: 31 LDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88
Query: 241 HLDAF--PSKSLRKLYLTNNRLHGSIPSSIF-ELANLTYLSLASNNFSGIVEPYMLAKLV 297
++ P SL+ L L N +S+F L NL L + + + A L
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSL----SACNISAFPSFLRSLELAYLDLSE 353
+L LE+ SL S+ S I L+L SA + F L S+ YL+L +
Sbjct: 149 SLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR--YLELRD 205
Query: 354 NNI 356
N+
Sbjct: 206 TNL 208
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 217 TIPSWLFTLPLLRDIDLSDNQLT--GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANL 274
+IPS L ++ +DLS N++T GH D +L+ L L ++R++ + + L +L
Sbjct: 45 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL-SLSACN 333
+L L+ N+ S + + L +L L L N T V S FP + L +L N
Sbjct: 103 EHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQ---TLGVTSLFPNLTNLQTLRIGN 158
Query: 334 ISAFPSFLRSLELAYL-DLSENNIDG-QIPNWMWEVGKDTLSFLDLSH--------NFIT 383
+ F S +R ++ A L L+E I + N+ + K S D+ H F+
Sbjct: 159 VETF-SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK---SIRDIHHLTLHLSESAFLL 214
Query: 384 EMKQIPWKNLKYLKLQ-SNLLQ---GPLPV-----PPPRLQF 416
E+ +++YL+L+ +NL + PLPV P +L F
Sbjct: 215 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 256
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 183 LDISNNQLTGSIPSHGS--GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
LD+S N++T HG NL VL L ++ ++ ++L L +DLSDN L+
Sbjct: 57 LDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 114
Query: 241 HLDAF--PSKSLRKLYLTNNRLHGSIPSSIF-ELANLTYLSLASNNFSGIVEPYMLAKLV 297
++ P SL+ L L N +S+F L NL L + + + A L
Sbjct: 115 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 174
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSL----SACNISAFPSFLRSLELAYLDLSE 353
+L LE+ SL S+ S I L+L SA + F L S+ YL+L +
Sbjct: 175 SLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR--YLELRD 231
Query: 354 NNI 356
N+
Sbjct: 232 TNL 234
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 42/234 (17%)
Query: 106 LRHLRELHLSQC---NFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNL-HQLTDVD 161
L+ ++L +C G LPA G+ +LA L+L++ + IP + Q+ ++
Sbjct: 326 LQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS 383
Query: 162 LGSNSFDGQFPDIMNLTRIS---RLDISNNQLTGSI---------PSHGSGLQNLAVLRL 209
N P+I + +S +D S N++ GS+ P+ G+ N++ + L
Sbjct: 384 FAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGI-NVSSINL 440
Query: 210 YNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTGHLDAFPSKSLRKLY--LTNNRLHGSIPS 266
NN +S P LF T L I+L N LT P SL+ N L SI
Sbjct: 441 SNNQIS-KFPKELFSTGSPLSSINLXGNXLT----EIPKNSLKDENENFKNTYLLTSIDL 495
Query: 267 SIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSS 320
+L L S++F PY L ++LS+NS S T +NSS
Sbjct: 496 RFNKLTKL------SDDFRATTLPY-------LVGIDLSYNSFSKFPTQPLNSS 536
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 277 LSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA 336
L L+ NN S + + +L NL +L LSHN L+F +S+ P + L LS+ ++
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 337 FPSFLRS 343
FL S
Sbjct: 103 LDEFLFS 109
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 326 ILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN---FI 382
ILS S + P L S A LDLS NN+ W + S L LSHN FI
Sbjct: 22 ILSCSKQQLPNVPQSLPSYT-ALLDLSHNNLSRLRAEWTPTRLTNLHSLL-LSHNHLNFI 79
Query: 383 TEMKQIPWKNLKYLKLQSNLLQ 404
+ +P NL+YL L SN L
Sbjct: 80 SSEAFVPVPNLRYLDLSSNHLH 101
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 457 LSHN---FITKMKQISWKNLGYLDLRSNLLQGP---LLVPPSSLRVILILNNQFTGEIIH 510
LSHN FI+ + NL YLDL SN L L +L V+L+ NN +
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130
Query: 511 SICDIIALDVLDLSNNRLS 529
+ D+ L L LS N++S
Sbjct: 131 AFEDMAQLQKLYLSQNQIS 149
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 231 IDLSDNQLTG-HLDAFPSK--SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
+DLS N L+ + P++ +L L L++N L+ + + NL YL L+SN+ +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL-----R 342
E ++ + L L L L +N + + Q+ L LS IS FP L +
Sbjct: 104 DE-FLFSDLQALEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 343 SLELAYLDLSENNIDG-------QIPNWM 364
+L LDLS N + ++P W+
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLH 261
VL LY+N ++ P L L +DL +NQLT G D L +L L +N+L
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL--TQLTQLSLNDNQLK 91
Query: 262 GSIPSSIFE-LANLTYLSLASN 282
SIP F+ L +LT++ L +N
Sbjct: 92 -SIPRGAFDNLKSLTHIWLLNN 112
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQC 117
LS L+++RL N S F + L LDVS R S C + LR L LS
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLS-F 130
Query: 118 NFYGFLPA--SLGNVTQLAVLSLSFKSF 143
N + LP GN+T+L L LS F
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 133 LAVLSLSFKSFSGHI-PPSLSNLHQLTDVDLGSNSF-DGQFPDIMNLTRISRLDISNNQL 190
+ +LS+S F + PPS S+ T ++ N F D F L R+ L + N L
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSF---TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
Query: 191 -----TGSIPSHGSGLQNLAV-LRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA 244
+ + S L+ L V L N+ +W ++ +L +LS N LTG +
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL---NLSSNMLTGSVFR 446
Query: 245 FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
++ L L NNR+ SIP + L L L++ASN +
Sbjct: 447 CLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSV 488
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLH 261
VL LY+N ++ P L L +DL +NQLT G D L +L L +N+L
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL--TQLTQLSLNDNQLK 99
Query: 262 GSIPSSIFE-LANLTYLSLASN 282
SIP F+ L +LT++ L +N
Sbjct: 100 -SIPRGAFDNLKSLTHIWLLNN 120
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 29/226 (12%)
Query: 174 IMNLTRISRLDISNNQLTGSIPS---HGSGLQNLAVLRLYNNTLSGTIPSWLFTL----- 225
++ ++ + L + N ++TG+ P +G +L +L L N + + T +WL L
Sbjct: 91 VLGISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWA-TRDAWLAELQQWLK 148
Query: 226 PLLRDIDLSD----NQLTGHLDAFPSKSLRKLYLTNNRLHG--SIPSSIFELANLTYLSL 279
P L+ + ++ N + FP+ L L L++N G + S++ L T L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPA--LSTLDLSDNPELGERGLISALCPLKFPTLQVL 206
Query: 280 ASNNFSGIVEP-----YMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNI 334
A N +G+ P + A V L L+LSHNSL + Q+ L+LS +
Sbjct: 207 ALRN-AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 335 SAFPSFLRSLELAYLDLSENNID-GQIPNWMWEVGKDTLS---FLD 376
P L + +L+ LDLS N +D P+ + +VG +L FLD
Sbjct: 266 KQVPKGLPA-KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 239 TGHLDAFPS---KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK 295
+G L++ PS ++++ L L+NNR+ S + NL L L SN + I E +
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS 98
Query: 296 LVNLAALELSHNSLS 310
L +L L+LS+N LS
Sbjct: 99 LGSLEHLDLSYNYLS 113
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLH 261
VL LY+N ++ P L L +DL +NQLT G D L +L L +N+L
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL--TQLTQLSLNDNQLK 91
Query: 262 GSIPSSIFE-LANLTYLSLASN 282
SIP F+ L +LT++ L +N
Sbjct: 92 -SIPRGAFDNLRSLTHIWLLNN 112
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 231 IDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290
+D S L P+ + + LYL +NR+ P L LT L L +N + ++
Sbjct: 14 VDCSGKSLASVPTGIPTTT-QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPA 71
Query: 291 YMLAKLVNLAALELSHNSL 309
+ KL L L L+ N L
Sbjct: 72 GVFDKLTQLTQLSLNDNQL 90
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 239 TGHLDAFPS---KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK 295
+G L++ PS ++++ L L+NNR+ S + NL L L SN + I E +
Sbjct: 14 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS 72
Query: 296 LVNLAALELSHNSLS 310
L +L L+LS+N LS
Sbjct: 73 LGSLEHLDLSYNYLS 87
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 157 LTDVDLGSNSFD----GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN 212
+T +DL N F +F D + T+I L +SN+ GS H + N
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN------FKDPDNF 267
Query: 213 TLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFE 270
T G S + T DLS +++ L + S L +L L N ++ ++ +
Sbjct: 268 TFKGLEASGVKT------CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309
L +L L+L S NF G ++ M L L L+LS+N +
Sbjct: 322 LTHLLKLNL-SQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
>pdb|2HQ0|A Chain A, Structure Of Rafe From Streptococcus Pneumoniae
pdb|2I58|A Chain A, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
pdb|2I58|B Chain B, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
Length = 388
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 447 IGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQ 503
I KD + +++ I KQ +W+ GY D+ +G +L+ P+ I +N Q
Sbjct: 200 IMKDDIKVMDILR--INGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQ 254
>pdb|2HEU|A Chain A, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|B Chain B, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|C Chain C, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
Length = 401
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 447 IGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQ 503
I KD + +++ I KQ +W+ GY D+ +G +L+ P+ I +N Q
Sbjct: 213 IMKDDIKVMDILR--INGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQ 267
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 230 DIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIV 288
+I + LT PS + R L L +N+L S+P +F+ L LT LSL+ N +
Sbjct: 11 EIRCNSKGLTSVPTGIPSSATR-LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLP 68
Query: 289 EPYMLAKLVNLAALELSHNSL 309
+ + KL L L L N L
Sbjct: 69 D-GVFDKLTKLTILYLHENKL 88
>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring
pdb|4HPF|B Chain B, Structure Of The Human Slo3 Gating Ring
Length = 722
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 359 QIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389
+IP+W W+ G + + F +L FI + +P
Sbjct: 132 KIPSWNWDTGDNIICFAELKLGFIAQGCLVP 162
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 34/177 (19%)
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLD 184
A L +T L+ + G + L+ L ++L N P + NLT+I+ L+
Sbjct: 38 ADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQITDLAP-LKNLTKITELE 91
Query: 185 ISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA 244
+S N L S +GLQ++ + +DL+ Q+T
Sbjct: 92 LSGNPLKNV--SAIAGLQSI------------------------KTLDLTSTQITDVTPL 125
Query: 245 FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
+L+ LYL N++ P + L NL YLS+ + S + L+KL L A
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 10/151 (6%)
Query: 151 LSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
L + L+ + G + +G I L + L++ +NQ+T P L + L L
Sbjct: 46 LDGIATLSAFNTGVTTIEG----IQYLNNLIGLELKDNQITDLTPLKN--LTKITELELS 99
Query: 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE 270
N L S + L ++ +DL+ Q+T +L+ LYL N++ P +
Sbjct: 100 GNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAG 155
Query: 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
L NL YLS+ +N + + L+KL L A
Sbjct: 156 LTNLQYLSIGNNQVNDLTPLANLSKLTTLRA 186
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 225 LPLLRDIDLSDNQLTGHLDAFPSKSL---RKLYLTNNRLHGSIPSSIFELANLTYLSLAS 281
LP L ++LS+NQ+T D P + L KL+L N+L P + L NL +L L
Sbjct: 65 LPNLTSLNLSNNQIT---DISPIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 119
Query: 282 NNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS--SFPQIFILSLSACNISAFPS 339
N + + L L L +L L HN + S +N PQ+ L L I+
Sbjct: 120 NK---VKDLSSLKDLKKLKSLSLEHNGI-----SDINGLVHLPQLESLYLGNNKITDITV 171
Query: 340 FLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-WKNLKYLKL 398
R +L L L +N I +P G L L LS N I++++ + KNL L+L
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 227
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 255 LTNNRLHGSIPSSIFELANLTYLSLASNNFSGI--VEPYMLAKLVNLAALEL 304
L++NR+ G + + NLT+L+L+ N + +EP L KL NL +L+L
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDL 120
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 105/255 (41%), Gaps = 52/255 (20%)
Query: 241 HLDAFPSKSL---RKLYLTNNRLHGSIPSSIFELANLTYLSLASN--NFSGIVEPYMLAK 295
L FP+ L + L LT N+ GSI L +L+YL L+ N +FSG
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGC------CS 369
Query: 296 LVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL------SACNISAFPSFLRSLELAYL 349
+L L H LSF ++++F + L + ++ F +FL +L YL
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 350 DLSENN----IDGQI-----------------PNWMWEVGKDT--LSFLDLSHNFITEMK 386
D+S N DG N + V +T L+FLDLS +++
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK---CQLE 486
Query: 387 QIPWKNLKYL-KLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
QI W L +LQ L + L FL +S+ + CS + +E I
Sbjct: 487 QISWGVFDTLHRLQ------LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 446 EIGKDSLSYLNLSHN 460
+ SL++ NL++N
Sbjct: 541 QHFPKSLAFFNLTNN 555
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 105/255 (41%), Gaps = 52/255 (20%)
Query: 241 HLDAFPSKSL---RKLYLTNNRLHGSIPSSIFELANLTYLSLASN--NFSGIVEPYMLAK 295
L FP+ L + L LT N+ GSI L +L+YL L+ N +FSG
Sbjct: 313 QLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGC------CS 364
Query: 296 LVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL------SACNISAFPSFLRSLELAYL 349
+L L H LSF ++++F + L + ++ F +FL +L YL
Sbjct: 365 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 424
Query: 350 DLSENN----IDGQI-----------------PNWMWEVGKDT--LSFLDLSHNFITEMK 386
D+S N DG N + V +T L+FLDLS +++
Sbjct: 425 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK---CQLE 481
Query: 387 QIPWKNLKYL-KLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
QI W L +LQ L + L FL +S+ + CS + +E I
Sbjct: 482 QISWGVFDTLHRLQ------LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 535
Query: 446 EIGKDSLSYLNLSHN 460
+ SL++ NL++N
Sbjct: 536 QHFPKSLAFFNLTNN 550
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHI 147
L + G +F+ +P + N +HL + LS S N+TQL L LS+
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 148 PPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQL 190
P + L L + L N +G F D L+ +S L I N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFND---LSALSHLAIGANPL 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,882,498
Number of Sequences: 62578
Number of extensions: 637825
Number of successful extensions: 2332
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 358
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)