Query 037786
Match_columns 565
No_of_seqs 300 out of 3666
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 04:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.6E-52 1E-56 462.4 39.2 506 9-535 68-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-50 6.4E-55 447.9 36.6 500 35-556 69-587 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.3E-36 2.8E-41 288.4 5.6 372 135-558 82-470 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.2E-35 6.8E-40 279.0 6.0 383 12-400 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.2E-37 4.8E-42 281.0 -10.6 464 36-551 46-539 (565)
6 KOG0618 Serine/threonine phosp 100.0 4.5E-35 9.8E-40 292.4 -5.9 475 15-528 3-488 (1081)
7 KOG0472 Leucine-rich repeat pr 100.0 3.1E-35 6.6E-40 267.1 -11.3 472 7-529 42-541 (565)
8 KOG0618 Serine/threonine phosp 100.0 2.3E-33 5.1E-38 280.2 -1.6 474 12-526 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 6E-30 1.3E-34 245.2 -3.0 371 7-387 4-379 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 5.4E-29 1.2E-33 238.7 -1.1 363 106-537 6-382 (1255)
11 PLN03210 Resistant to P. syrin 99.9 7.7E-23 1.7E-27 228.3 25.0 334 194-551 550-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.3E-21 4.9E-26 216.6 26.4 336 27-380 551-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 9.5E-25 2.1E-29 198.8 -3.6 405 110-526 70-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1.5E-21 3.2E-26 202.3 16.0 264 227-536 202-465 (788)
15 KOG4237 Extracellular matrix p 99.9 1.1E-23 2.3E-28 192.0 -2.1 135 31-189 63-199 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 3E-20 6.5E-25 192.7 16.3 260 248-555 201-460 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.3E-19 5E-24 187.4 12.2 243 227-505 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 9.3E-19 2E-23 182.9 12.8 245 249-529 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 5.2E-17 1.1E-21 158.2 0.8 276 14-308 2-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 7.5E-17 1.6E-21 157.1 0.3 251 84-334 24-319 (319)
21 KOG0617 Ras suppressor protein 99.5 8.3E-17 1.8E-21 130.4 -5.3 156 35-195 33-189 (264)
22 KOG0617 Ras suppressor protein 99.5 3.2E-16 7E-21 127.0 -5.4 165 8-178 31-196 (264)
23 KOG3207 Beta-tubulin folding c 99.2 1.2E-12 2.5E-17 122.3 0.3 195 295-504 119-338 (505)
24 KOG1909 Ran GTPase-activating 99.2 4.1E-12 9E-17 115.4 1.1 195 292-528 87-310 (382)
25 KOG3207 Beta-tubulin folding c 99.2 3.7E-12 8.1E-17 118.9 0.4 115 270-385 170-286 (505)
26 PF14580 LRR_9: Leucine-rich r 99.1 7.8E-11 1.7E-15 100.6 6.2 101 370-484 19-126 (175)
27 KOG1909 Ran GTPase-activating 99.1 3.6E-12 7.8E-17 115.8 -3.1 232 4-260 24-310 (382)
28 PF14580 LRR_9: Leucine-rich r 99.1 5.2E-11 1.1E-15 101.7 4.0 130 332-478 7-147 (175)
29 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.6E-16 108.3 1.0 125 389-529 282-412 (490)
30 KOG0532 Leucine-rich repeat (L 99.0 5.8E-12 1.2E-16 121.5 -5.2 203 327-549 55-266 (722)
31 KOG0532 Leucine-rich repeat (L 99.0 8.7E-12 1.9E-16 120.2 -4.6 187 321-527 74-271 (722)
32 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 103.7 1.6 139 197-340 279-417 (490)
33 COG4886 Leucine-rich repeat (L 99.0 1.1E-09 2.3E-14 109.8 7.1 168 322-507 116-292 (394)
34 KOG4658 Apoptotic ATPase [Sign 98.9 5.6E-10 1.2E-14 119.5 3.6 268 35-310 523-807 (889)
35 COG4886 Leucine-rich repeat (L 98.8 4.1E-09 8.8E-14 105.7 6.8 194 87-287 97-292 (394)
36 PLN03150 hypothetical protein; 98.8 1.8E-08 4E-13 105.7 9.2 108 413-534 419-533 (623)
37 KOG0531 Protein phosphatase 1, 98.8 1.6E-09 3.4E-14 108.7 0.7 245 269-535 69-324 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.7 5.8E-09 1.3E-13 111.8 4.0 250 59-315 523-788 (889)
39 KOG0531 Protein phosphatase 1, 98.7 1.8E-09 4E-14 108.2 -0.6 255 272-552 49-317 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 1.7E-08 3.7E-13 70.7 3.7 59 84-142 2-60 (61)
41 KOG4341 F-box protein containi 98.7 9.4E-10 2E-14 102.6 -3.9 295 227-555 139-467 (483)
42 KOG1859 Leucine-rich repeat pr 98.7 4.5E-10 9.7E-15 111.6 -6.6 125 389-530 162-293 (1096)
43 PF13855 LRR_8: Leucine rich r 98.6 2.6E-08 5.7E-13 69.7 3.6 61 107-167 1-61 (61)
44 KOG2982 Uncharacterized conser 98.6 8.2E-09 1.8E-13 92.1 1.2 204 108-311 46-263 (418)
45 PLN03150 hypothetical protein; 98.6 1.5E-07 3.3E-12 98.9 8.7 107 109-215 420-528 (623)
46 KOG2120 SCF ubiquitin ligase, 98.5 7.7E-09 1.7E-13 92.3 -3.5 177 11-188 186-373 (419)
47 KOG4341 F-box protein containi 98.5 1.5E-08 3.2E-13 94.8 -2.3 271 202-482 138-437 (483)
48 KOG2120 SCF ubiquitin ligase, 98.4 7E-09 1.5E-13 92.6 -5.2 86 155-240 185-274 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.4 2.6E-08 5.7E-13 87.8 -1.6 162 174-335 88-285 (388)
50 KOG2982 Uncharacterized conser 98.3 5.1E-08 1.1E-12 87.1 -1.3 208 128-335 42-262 (418)
51 KOG1859 Leucine-rich repeat pr 98.3 2.2E-08 4.8E-13 99.9 -4.3 126 250-382 166-291 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.3 4.4E-08 9.5E-13 86.4 -2.2 88 200-287 212-318 (388)
53 PRK15386 type III secretion pr 98.3 5E-06 1.1E-10 80.2 10.8 32 450-481 156-187 (426)
54 PRK15386 type III secretion pr 98.3 4.5E-06 9.8E-11 80.5 10.1 131 345-502 53-187 (426)
55 KOG1644 U2-associated snRNP A' 98.1 9.6E-06 2.1E-10 68.9 6.4 97 391-501 42-149 (233)
56 KOG1644 U2-associated snRNP A' 98.0 5.8E-06 1.3E-10 70.1 4.4 101 411-527 41-151 (233)
57 PF12799 LRR_4: Leucine Rich r 98.0 5.9E-06 1.3E-10 52.7 2.6 37 492-529 1-37 (44)
58 KOG4579 Leucine-rich repeat (L 97.8 2E-06 4.2E-11 68.1 -2.4 78 450-529 53-136 (177)
59 PF13306 LRR_5: Leucine rich r 97.7 7.4E-05 1.6E-09 61.6 6.3 124 3-133 5-128 (129)
60 KOG3665 ZYG-1-like serine/thre 97.7 1E-05 2.2E-10 85.0 0.8 144 391-547 122-282 (699)
61 KOG4579 Leucine-rich repeat (L 97.7 1.9E-06 4.1E-11 68.2 -3.5 82 450-532 77-162 (177)
62 PF12799 LRR_4: Leucine Rich r 97.7 4.7E-05 1E-09 48.6 3.4 37 84-121 2-38 (44)
63 PF13306 LRR_5: Leucine rich r 97.6 0.0003 6.5E-09 57.9 8.0 124 100-229 5-129 (129)
64 KOG3665 ZYG-1-like serine/thre 97.5 0.00011 2.4E-09 77.4 4.5 86 272-357 122-208 (699)
65 KOG2739 Leucine-rich acidic nu 97.4 9E-05 1.9E-09 66.0 1.9 100 319-420 40-151 (260)
66 KOG1947 Leucine rich repeat pr 97.1 0.00017 3.7E-09 74.6 1.2 231 271-530 187-441 (482)
67 KOG1947 Leucine rich repeat pr 97.0 0.00012 2.5E-09 75.8 -0.8 35 201-235 187-223 (482)
68 KOG2123 Uncharacterized conser 97.0 4.3E-05 9.3E-10 68.2 -3.6 93 390-498 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.8 0.00069 1.5E-08 60.4 2.6 82 370-465 43-131 (260)
70 KOG2123 Uncharacterized conser 96.8 8.6E-05 1.9E-09 66.4 -3.5 102 225-328 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 96.2 0.0017 3.7E-08 34.3 0.5 19 518-537 2-20 (22)
72 KOG4308 LRR-containing protein 95.9 4.9E-05 1.1E-09 76.4 -11.4 81 450-531 376-475 (478)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.01 2.2E-07 31.3 1.4 21 493-514 1-21 (22)
74 KOG4308 LRR-containing protein 95.0 0.00039 8.5E-09 70.1 -8.7 80 450-529 204-303 (478)
75 PF13504 LRR_7: Leucine rich r 94.3 0.028 6E-07 27.4 1.3 14 451-464 2-15 (17)
76 PF13504 LRR_7: Leucine rich r 93.5 0.051 1.1E-06 26.4 1.4 15 371-385 2-16 (17)
77 KOG3864 Uncharacterized conser 93.0 0.0092 2E-07 51.3 -2.8 37 36-72 102-138 (221)
78 PF13516 LRR_6: Leucine Rich r 92.5 0.06 1.3E-06 28.9 0.9 22 412-433 2-23 (24)
79 PF13516 LRR_6: Leucine Rich r 92.3 0.054 1.2E-06 29.1 0.5 21 492-512 2-22 (24)
80 smart00369 LRR_TYP Leucine-ric 90.8 0.2 4.4E-06 27.5 1.9 20 515-535 1-20 (26)
81 smart00370 LRR Leucine-rich re 90.8 0.2 4.4E-06 27.5 1.9 20 515-535 1-20 (26)
82 KOG3864 Uncharacterized conser 89.2 0.097 2.1E-06 45.2 -0.4 81 203-283 102-187 (221)
83 smart00369 LRR_TYP Leucine-ric 87.3 0.6 1.3E-05 25.5 2.2 21 10-30 2-22 (26)
84 smart00370 LRR Leucine-rich re 87.3 0.6 1.3E-05 25.5 2.2 21 10-30 2-22 (26)
85 smart00364 LRR_BAC Leucine-ric 82.9 0.9 2E-05 24.8 1.4 18 516-534 2-19 (26)
86 smart00368 LRR_RI Leucine rich 81.0 1.3 2.7E-05 24.9 1.7 22 412-433 2-23 (28)
87 KOG0473 Leucine-rich repeat pr 78.9 0.024 5.1E-07 49.9 -8.6 59 106-166 64-122 (326)
88 KOG4242 Predicted myosin-I-bin 78.7 17 0.00036 36.3 9.3 55 451-505 414-481 (553)
89 smart00365 LRR_SD22 Leucine-ri 73.9 2.9 6.2E-05 23.0 1.7 16 450-465 2-17 (26)
90 KOG0473 Leucine-rich repeat pr 71.1 0.076 1.6E-06 46.8 -7.5 89 101-191 36-124 (326)
91 smart00367 LRR_CC Leucine-rich 69.7 3.4 7.4E-05 22.5 1.5 16 412-427 2-18 (26)
92 KOG3763 mRNA export factor TAP 67.6 3.5 7.6E-05 41.6 2.1 34 368-401 216-254 (585)
93 KOG3763 mRNA export factor TAP 65.2 3.5 7.6E-05 41.7 1.5 15 411-425 217-231 (585)
94 TIGR00864 PCC polycystin catio 53.5 7.6 0.00017 47.4 1.9 34 498-531 1-34 (2740)
95 KOG1665 AFH1-interacting prote 33.4 73 0.0016 28.3 4.2 10 345-354 172-181 (302)
96 KOG4242 Predicted myosin-I-bin 32.4 54 0.0012 32.9 3.7 177 370-558 165-372 (553)
97 smart00446 LRRcap occurring C- 25.6 42 0.00092 18.5 1.0 16 4-19 7-22 (26)
98 PRK09718 hypothetical protein; 20.4 1.3E+02 0.0029 30.5 4.0 146 345-530 91-242 (512)
99 PF05725 FNIP: FNIP Repeat; I 20.2 1.6E+02 0.0034 18.4 3.1 7 451-457 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.6e-52 Score=462.37 Aligned_cols=506 Identities=32% Similarity=0.475 Sum_probs=449.2
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCcccc-CCCCCCEEecCCCCCCCccCCCCCCCCCCcE
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKFNSNLSGVFPRSNWTSPLRC 87 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 87 (565)
..+++.|+++++.+.+..+..+..+ ++|++|++++|++.+.+|..+. .+++|++|++++| ...+..+. ...++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~-~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR-GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc-cccCCCCE
Confidence 3578999999999988888889888 9999999999999877776654 8999999999999 56555543 34589999
Q ss_pred EEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccc
Q 037786 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 99999999988999999999999999999999888999999999999999999999988999999999999999999998
Q ss_pred cccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-
Q 037786 168 DGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF- 245 (565)
Q Consensus 168 ~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~- 245 (565)
.+..+. ++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 865554 899999999999999999889999999999999999999998888888999999999999999988665543
Q ss_pred -CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCc
Q 037786 246 -PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQI 324 (565)
Q Consensus 246 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L 324 (565)
..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++....+..+ ..++++
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~L 382 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGL-CSSGNL 382 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhH-hCcCCC
Confidence 67899999999999998889999999999999999999986655 568889999999999999987666555 567899
Q ss_pred cEEEcCCCCCC-CCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcC
Q 037786 325 FILSLSACNIS-AFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQ 399 (565)
Q Consensus 325 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~ 399 (565)
+.|++++|.+. .+|..+... +|+.|++++|++++..|..+. .++.|+.|++++|.++...+. .+++|+.|+++
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh--cCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 99999999987 566555544 999999999999988887765 679999999999999887663 67899999999
Q ss_pred CCcccccCCCC--CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCccc
Q 037786 400 SNLLQGPLPVP--PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLG 474 (565)
Q Consensus 400 ~n~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~ 474 (565)
+|++.+..|.. .++|++|++++|++++..+..+..+ +.|++|++++|.+.+. |. ..+++|+
T Consensus 461 ~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL--------------SELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred CceeeeecCcccccccceEEECcCCccCCccChhhhhh--------------hccCEEECcCCcceeeCChHHcCccCCC
Confidence 99998877765 6889999999999999999888888 9999999999999977 65 7789999
Q ss_pred EEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCC
Q 037786 475 YLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 475 ~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 535 (565)
.|++++|.+++.+|. .+++|++||+++|.+++.+|..+..+++|+.|++++|++.+.+|+.
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999987776 7899999999999999999999999999999999999999988865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-50 Score=447.91 Aligned_cols=500 Identities=33% Similarity=0.444 Sum_probs=443.1
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCC--CCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSN--WTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
.+++.|+++++.+++..+.++..+++|++|++++| ...+.++... .+++|++|++++|.+++.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 57999999999999888999999999999999999 6665555443 459999999999999877775 568999999
Q ss_pred EcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCccc
Q 037786 113 HLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 191 (565)
++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+. ++.+++|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 9999999888999999999999999999999888999999999999999999998765554 899999999999999999
Q ss_pred ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhh
Q 037786 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIF 269 (565)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~ 269 (565)
+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. ..++|++|++++|.+.+..|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 889999999999999999999998888999999999999999999987654432 668999999999999988999999
Q ss_pred cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCchhhcc-ccc
Q 037786 270 ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSL-ELA 347 (565)
Q Consensus 270 ~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~-~L~ 347 (565)
.+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|++. .+|..+... +++
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 99999999999999986654 568899999999999999987666555 77899999999999987 566555444 899
Q ss_pred eEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCC---CCCCCcEEEccc
Q 037786 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASN 421 (565)
Q Consensus 348 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~ 421 (565)
.+++++|.+.+.+|..+. .+++|+.|++++|+++...+. .+++|+.|++++|.+.+..+. .+++|++|++++
T Consensus 384 ~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred EEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 999999999989998876 579999999999999876553 678999999999999987765 389999999999
Q ss_pred cccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCc
Q 037786 422 NQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLR 495 (565)
Q Consensus 422 n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~ 495 (565)
|++.+..|..+. . ++|++|++++|++.+. |. ..+++|+.|++++|.+.+.+|. .+++|+
T Consensus 462 n~~~~~~p~~~~-~--------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 462 NKFFGGLPDSFG-S--------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred ceeeeecCcccc-c--------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 999877666442 2 7999999999999987 64 6789999999999999987776 789999
Q ss_pred EeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccccc
Q 037786 496 VILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATTL 556 (565)
Q Consensus 496 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~~ 556 (565)
+|++++|.+++..|..++.+++|+.|++++|++.+.+|+.++.+++|+.+++.+..+....
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 9999999999999999999999999999999999999999999999999999987665433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-36 Score=288.42 Aligned_cols=372 Identities=22% Similarity=0.225 Sum_probs=238.4
Q ss_pred eeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccc
Q 037786 135 VLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 214 (565)
.|++++|.+....+..|.++++|+++++..|.+..++.......+|+.|++..|.+..+....+..++.|+.||++.|.+
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 45555555555445555555555555555555543333333333455555555555444444444445555555555544
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 294 (565)
.......|..-.+ +++|++.+|.|+..-...|..+.+|..|.++.|+++. ++...|+
T Consensus 162 s~i~~~sfp~~~n----------------------i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk 218 (873)
T KOG4194|consen 162 SEIPKPSFPAKVN----------------------IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFK 218 (873)
T ss_pred hcccCCCCCCCCC----------------------ceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhh
Confidence 4333333333344 4555555555554444445555556666666666552 3445555
Q ss_pred cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchh--hccccceEeccCCcCcccCChhhhhhCCCCc
Q 037786 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL--RSLELAYLDLSENNIDGQIPNWMWEVGKDTL 372 (565)
Q Consensus 295 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 372 (565)
.+++|+.|++..|.|...-... +.++++|+.|.+..|++..+.+.+ ...++++|+++.|+++..-..|++ ++.+|
T Consensus 219 ~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L 295 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSL 295 (873)
T ss_pred hcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc--ccchh
Confidence 5666666666666554222222 256666777777777766554422 222777788888877766666666 67888
Q ss_pred cEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccchhhhhhcCCCCCCccccc
Q 037786 373 SFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~ 446 (565)
+.|++|+|.|..+... .+++|+.|+|++|+++...+.. +..|++|.+++|.++......|...
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l----------- 364 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL----------- 364 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-----------
Confidence 8888888888877764 4577888888888887654443 7778888888888876666666666
Q ss_pred cCCCCCcEEeCcCCCCCCC-cc-----cCCCcccEEECCCCcccc---cCCCCCCCCcEeeccCceeeeccchhhhcCCC
Q 037786 447 IGKDSLSYLNLSHNFITKM-KQ-----ISWKNLGYLDLRSNLLQG---PLLVPPSSLRVILILNNQFTGEIIHSICDIIA 517 (565)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~-~~-----~~~~~L~~L~ls~n~l~~---~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 517 (565)
.+|++|||++|.++.. .+ .++++|+.|++-||++.. ..+..+..|+.||+.+|.|-.+.+++|..+ .
T Consensus 365 ---ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~ 440 (873)
T KOG4194|consen 365 ---SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-E 440 (873)
T ss_pred ---hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-h
Confidence 7888888888887765 22 568888888888888754 334488888888888888888888888888 8
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcccccch
Q 037786 518 LDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATTLFE 558 (565)
Q Consensus 518 L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~ 558 (565)
|++|-+..-.+.|. |+|+|...|+..-.+.
T Consensus 441 Lk~Lv~nSssflCD-----------Cql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 441 LKELVMNSSSFLCD-----------CQLKWLAQWLYRRKLQ 470 (873)
T ss_pred hhhhhhcccceEEe-----------ccHHHHHHHHHhcccc
Confidence 88888888888888 9999999998655443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=278.98 Aligned_cols=383 Identities=24% Similarity=0.274 Sum_probs=282.9
Q ss_pred CcEEEcCCCcCCCCCchhhhh-cCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC-CCCcEEE
Q 037786 12 LQLLFLDYVDMSTVVPGTLKN-LSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT-SPLRCLD 89 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~-l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~ 89 (565)
-+.||.+++.+..+....+.+ +|+..+.|++++|++....+..|.++++|+.+++..| ....+|.+... .+++.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhcccccccccceeEEe
Confidence 346888888777665444333 4567788999999988888888899999999998887 33445555555 6688888
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
|.+|.|...-.+.+.-++.|++|||+.|.++.+....|..-.++++|++++|+|+..-...|..+.+|..|.++.|.++.
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 88888876667777888888888888888877766777777788888888888887777788888888888888888887
Q ss_pred cCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--C
Q 037786 170 QFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--P 246 (565)
Q Consensus 170 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~ 246 (565)
++.. |.++++|+.|++..|++.-..-..|.++++|+.|.+..|.+.......|..+.++++|+++.|++....... .
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 7666 777888888888888877444556788888888888888887777778888888888888888887544333 6
Q ss_pred CCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccE
Q 037786 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFI 326 (565)
Q Consensus 247 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~ 326 (565)
...|+.|++++|.|...-++....+++|++|++++|.++. .++..|..+..|++|++++|.++...... +..+++|++
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a-f~~lssL~~ 369 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGA-FVGLSSLHK 369 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhH-HHHhhhhhh
Confidence 6778888888888876666666677888888888888874 45667777888888888888776543333 366778888
Q ss_pred EEcCCCCCC-CCC----chhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCC--CCCeEEcC
Q 037786 327 LSLSACNIS-AFP----SFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWK--NLKYLKLQ 399 (565)
Q Consensus 327 L~l~~~~l~-~l~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~L~~L~l~ 399 (565)
|++++|.+. .++ .+.+...|+.|++.+|++. .++...+. ++++|+.|||.+|.|.++-+..|. .|++|-+.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfs-gl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFS-GLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhc-cCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 888888765 122 2223336777777777777 56655554 677777777777777777664332 45555554
Q ss_pred C
Q 037786 400 S 400 (565)
Q Consensus 400 ~ 400 (565)
.
T Consensus 448 S 448 (873)
T KOG4194|consen 448 S 448 (873)
T ss_pred c
Confidence 3
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-37 Score=280.97 Aligned_cols=464 Identities=26% Similarity=0.372 Sum_probs=286.5
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
.++.+.+++|.+. .....+.++.-|.+|++.+| ......+.+.....++.++++++.+. .+|+.+....+++.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4566666666665 44455666666777777666 55555555555566666777777666 566667777777777777
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCC
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIP 195 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 195 (565)
+|.+. ..++.++.+..+..++..+|.+. ..|+++..+.++..+++.+|.+...++..-+++.|++++...|.+. .+|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence 76665 44555666667777777777666 4666666666777777777776666666444677777777666665 566
Q ss_pred CCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhhcCCC
Q 037786 196 SHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIFELAN 273 (565)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 273 (565)
..++.+.+|..|++..|++. ..| .|.+|..|++++++.|++.....+. ..+++..|++++|+++ ..|+.+..+.+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 66666777777777777765 344 5666777777777777666444333 4566677777777776 67777777777
Q ss_pred cCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccC----CCCCccEEEcCCCCCC--------------
Q 037786 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS----SFPQIFILSLSACNIS-------------- 335 (565)
Q Consensus 274 L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~----~~~~L~~L~l~~~~l~-------------- 335 (565)
|++||+++|.++.. +..++++ +|+.|.+.||++...--..+.. -+..|+. .+..-.+.
T Consensus 277 L~rLDlSNN~is~L--p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 277 LERLDLSNNDISSL--PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhcccCCccccC--Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCC
Confidence 77888887777754 3456777 7777777777664211110000 0111111 00000000
Q ss_pred -CCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCC
Q 037786 336 -AFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRL 414 (565)
Q Consensus 336 -~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L 414 (565)
.+|......+.+.|++++-+++ .+|..+|..+-. .-.+..+++.|++. +.|..++.+
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~--------------------~~Vt~VnfskNqL~-elPk~L~~l 410 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS--------------------EIVTSVNFSKNQLC-ELPKRLVEL 410 (565)
T ss_pred Ccccchhhhhhhhhhcccccccc-cCCHHHHHHhhh--------------------cceEEEecccchHh-hhhhhhHHH
Confidence 0111111113444444444444 444444432110 11345555555554 344443222
Q ss_pred c----EEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCC
Q 037786 415 Q----FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 415 ~----~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~ 488 (565)
+ .+++++|.+ +-.+..++.+ ++|..|++++|.+.++|. +.+-.|+.+++|.|++.. .|
T Consensus 411 kelvT~l~lsnn~i-sfv~~~l~~l--------------~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP 474 (565)
T KOG0472|consen 411 KELVTDLVLSNNKI-SFVPLELSQL--------------QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LP 474 (565)
T ss_pred HHHHHHHHhhcCcc-ccchHHHHhh--------------hcceeeecccchhhhcchhhhhhhhhheeccccccccc-ch
Confidence 2 344455544 3666777777 888888888888888865 666678888888886543 34
Q ss_pred C---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCC
Q 037786 489 V---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRW 551 (565)
Q Consensus 489 ~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~ 551 (565)
. .+..++++-.++|++...-+.++.++.+|..||+++|.+. .+|+.+++|++|++|.+.|..
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence 3 6677777777778888767777888888888888888887 788888888888888777743
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=4.5e-35 Score=292.36 Aligned_cols=475 Identities=26% Similarity=0.280 Sum_probs=256.6
Q ss_pred EEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCc
Q 037786 15 LFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR 94 (565)
Q Consensus 15 L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 94 (565)
+|.+.+++..++..-+.. ..++.|+++.|.+-....+++.+.-+|+.|+++.| .............+|+.|.++.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~--~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNN--EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccchhhccH--HHHHhhhccccccccCchHHhhheeeeEEeecccc-ccccCCchhhhHHHHhhcccchhh
Confidence 455666665554443333 33677777777554333445555556777777776 344444444444777777777777
Q ss_pred cCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCC
Q 037786 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDI 174 (565)
Q Consensus 95 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 174 (565)
+. ..|.+..++.+|++++|.+|... ..|..+..+++|+.|++++|.+. ..|..+..+..+..+..++|.. ...+
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~---~~~l 153 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEK---IQRL 153 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchh---hhhh
Confidence 76 55677778888888888876654 67777888888888888888776 5677777777777777777711 1112
Q ss_pred cCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEE
Q 037786 175 MNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLY 254 (565)
Q Consensus 175 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 254 (565)
+... ++.+++..+.+.+.++..+..+.. .+++++|.+. ...+..+++|+.+....|++.... ...++++.|+
T Consensus 154 g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~ 225 (1081)
T KOG0618|consen 154 GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE--ISGPSLTALY 225 (1081)
T ss_pred cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE--ecCcchheee
Confidence 2222 666666666666555555554444 5677777664 123445555555555555544221 1224455555
Q ss_pred ccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCC
Q 037786 255 LTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNI 334 (565)
Q Consensus 255 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l 334 (565)
..+|.++... ......++++++++.+.+... +.++..+.+|+.++..+|.++.. +... ....+|+.+.+.+|.+
T Consensus 226 a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~l--p~wi~~~~nle~l~~n~N~l~~l-p~ri-~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 226 ADHNPLTTLD--VHPVPLNLQYLDISHNNLSNL--PEWIGACANLEALNANHNRLVAL-PLRI-SRITSLVSLSAAYNEL 299 (1081)
T ss_pred eccCcceeec--cccccccceeeecchhhhhcc--hHHHHhcccceEecccchhHHhh-HHHH-hhhhhHHHHHhhhhhh
Confidence 5555544111 112223555555555555433 24555555555555555555321 1111 2334455555555555
Q ss_pred CCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCCC
Q 037786 335 SAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPVP 410 (565)
Q Consensus 335 ~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~ 410 (565)
..+|.+.... .|+.|++..|++. .+|..++.....+++.+..+.|++...+.. ..+.|+.|.+.+|.+++.....
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 5555544422 5555555555555 444444333233355555555555555442 3345555555555555433221
Q ss_pred ---CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccc
Q 037786 411 ---PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 411 ---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~ 485 (565)
.+.|+.|++++|++.......+.++ +.|++|++|+|++..+|. ..|+.|+.|..-+|.+.-
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kl--------------e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKL--------------EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhch--------------HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee
Confidence 5555555555555554444444554 555555555555555543 455555555555555543
Q ss_pred cCCC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcC
Q 037786 486 PLLV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 486 ~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 528 (565)
.|+ .+++|+.+|+|.|.++......-..-++|++||++||.-
T Consensus 445 -fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 -FPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -chhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 223 555555555555555433222111225566666665554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.1e-35 Score=267.13 Aligned_cols=472 Identities=25% Similarity=0.308 Sum_probs=347.9
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCc
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLR 86 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 86 (565)
..-..++.+.+++|.+.... ..+..+ +.+.+|++++|+.. ..|.+++.+..++.++.++| +.....+.......++
T Consensus 42 W~qv~l~~lils~N~l~~l~-~dl~nL-~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLR-EDLKNL-ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLV 117 (565)
T ss_pred hhhcchhhhhhccCchhhcc-Hhhhcc-cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhh
Confidence 34456788999999987654 456777 88999999999998 78889999999999999999 7777777777779999
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (565)
+++++++.+. ..+++++.+..++.++..+|++. ..|.++.++.++..+++.++.+.. .|+..-.++.|++++...|.
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhh
Confidence 9999999998 77889999999999999999987 567888999999999999999984 55554459999999999999
Q ss_pred ccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-
Q 037786 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF- 245 (565)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~- 245 (565)
+...++.++.+.+|..|++..|++. ..| .|.+|..|++++++.|.+.....+....++++.+|++++|++...+++.
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH
Confidence 9989999999999999999999998 667 7999999999999999998555556678999999999999999887776
Q ss_pred CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChH--------hhhcCCC-CCEEEccCCc---ccccc
Q 037786 246 PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY--------MLAKLVN-LAALELSHNS---LSFGT 313 (565)
Q Consensus 246 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------~l~~~~~-L~~L~l~~~~---i~~~~ 313 (565)
-.++|..|++++|.++ ..|..++++ +|+.|.+.||++... ... .+..+++ .+.=.++... -+...
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 6678999999999999 678889998 999999999987532 111 1111111 0000111110 00000
Q ss_pred -CCcc---cCCCCCccEEEcCCCCCCCCCchhhcc----ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCc
Q 037786 314 -TSKV---NSSFPQIFILSLSACNISAFPSFLRSL----ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 314 -~~~~---~~~~~~L~~L~l~~~~l~~l~~~~~~~----~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 385 (565)
.... .....+.+.|++++-+++.+|...+.. -++..+++.|++. ++|..+... -..++.+.+++|.+..+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~l-kelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVEL-KELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHH-HHHHHHHHhhcCccccc
Confidence 0000 022346788899999999999766554 3889999999998 888876532 12344566666666555
Q ss_pred cCC--CCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCC
Q 037786 386 KQI--PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463 (565)
Q Consensus 386 ~~~--~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (565)
+.. .+++|.-|++++|.+. +.|..+..+ -.|++|++++|++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln----------------------~LP~e~~~l--------------v~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN----------------------DLPEEMGSL--------------VRLQTLNLSFNRFR 471 (565)
T ss_pred hHHHHhhhcceeeecccchhh----------------------hcchhhhhh--------------hhhheecccccccc
Confidence 542 5566666666666554 233333333 44555555555555
Q ss_pred CCcc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCc
Q 037786 464 KMKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 464 ~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 529 (565)
..|. .....++.+-.+.|++...-++ .+.+|.+||+.+|.+. .+|..+++|++|++|+++||+|+
T Consensus 472 ~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4443 2223333444444444432222 5567777777777776 46677999999999999999998
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-33 Score=280.18 Aligned_cols=474 Identities=26% Similarity=0.296 Sum_probs=376.6
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEcc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (565)
++.|++..|.+...+...+... -+|++|++++|++. ..|..+..+++|+.|+++.| .+.........+..|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~-v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKR-VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhhe-eeeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheec
Confidence 7788888887766555555565 67999999999997 78888999999999999988 455555455555999999999
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
+|.+. ..|..+..+.+|++|+++.|.+. ..|..+..+..+..+..++|......+.. . ++.+++..+.+...+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccch
Confidence 99988 78999999999999999999986 55777888899999999998322222221 1 777777777765444
Q ss_pred cC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCC
Q 037786 172 PD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSL 250 (565)
Q Consensus 172 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L 250 (565)
.. +..+.. .+++.+|.+. . ..+..++.|+.+....|.+... -..-++++.|..++|.+........+..+
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl 243 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHPVPLNL 243 (1081)
T ss_pred hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccccccccc
Confidence 33 555554 6999999876 2 3466788999999998887632 22457899999999999977667788899
Q ss_pred cEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcC
Q 037786 251 RKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330 (565)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 330 (565)
+.++++++.++ .+|.|+..+.+|+.++..+|.+... +.......+|+.+.+..|.+.+..+ +......|++|++.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~l--p~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLVAL--PLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRTLDLQ 318 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHHhh--HHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeeeeeeh
Confidence 99999999999 6789999999999999999999644 4556777899999999999876543 33668899999999
Q ss_pred CCCCCCCCchhhcc---ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCccc
Q 037786 331 ACNISAFPSFLRSL---ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQ 404 (565)
Q Consensus 331 ~~~l~~l~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~ 404 (565)
.|++..+|..+... .+..++.+.|.+. ..|.. .....+.|+.|++.+|.+++-.. ..+++|+.|+|++|++.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~-~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSY-EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhcccc-ccccc-cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 99999998754433 5888888988887 44422 22246889999999999998655 37899999999999987
Q ss_pred ccCCC---CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCC
Q 037786 405 GPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRS 480 (565)
Q Consensus 405 ~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~ 480 (565)
..... .++.|+.|++|||+++ .+|..+..+ +.|++|-..+|++..+|. ..+++|+.+|+|.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~--------------~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANL--------------GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC 461 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh--------------hhhHHHhhcCCceeechhhhhcCcceEEeccc
Confidence 53332 2788999999999998 566888888 999999999999999986 8889999999999
Q ss_pred Ccccc-cCCC-CC-CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 481 NLLQG-PLLV-PP-SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 481 n~l~~-~~~~-~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
|.++. .++. .+ ++|++||+++|.-...-.+.|..+.++..+++.-+
T Consensus 462 N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 462 NNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred chhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99985 3343 44 89999999999965455567777888888887777
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=6e-30 Score=245.16 Aligned_cols=371 Identities=25% Similarity=0.323 Sum_probs=310.4
Q ss_pred hCCCCCcEEEcCCCcCC-CCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCC
Q 037786 7 QNVTKLQLLFLDYVDMS-TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPL 85 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L 85 (565)
+-++-+|-+|+++|.++ +..|..+..+ .+++.|.|..+++. .+|+.++.+.+|++|.+++| .+.........++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhh
Confidence 45677888999999988 4567778887 99999999999887 78999999999999999999 677766777777999
Q ss_pred cEEEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
|.+++..|++. .-+|..+..+..|..|+|++|++. ..|..+..-++.-+|++++|.|..+....|-+++.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 99999999875 346888889999999999999987 6688888889999999999999866556778899999999999
Q ss_pred ccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc-CCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 165 NSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS-GTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
|++...+|.+.++..|+.|.+++|++.......+..+++|+.|.+++..-+ ..+|..+..+.+|..++++.|.+...+.
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH
Confidence 999999999999999999999999887665566777888999999987643 3577888899999999999998885544
Q ss_pred CC-CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 244 AF-PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 244 ~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.. ..++|+.|++++|.++ .+........+|++|+++.|+++.. ++.+..++.|+.|.+.+|+++.++.+.-.+.+.
T Consensus 240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc--hHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 33 6788999999999998 5555566778899999999999854 567888999999999999998887776668888
Q ss_pred CccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC
Q 037786 323 QIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ 387 (565)
Q Consensus 323 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 387 (565)
+|+.+...+|.+.-+|..+..+ .|+.|.++.|.+- .+|.++- -++.|+.||+..|+-..+|+
T Consensus 317 ~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIH--lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 317 QLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH--LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhh--hcCCcceeeccCCcCccCCC
Confidence 8888888888888788766655 8888888888887 6777765 35788888888887666666
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=5.4e-29 Score=238.66 Aligned_cols=363 Identities=25% Similarity=0.368 Sum_probs=221.9
Q ss_pred CCCCCEEEcccccCc-ccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEe
Q 037786 106 LRHLRELHLSQCNFY-GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLD 184 (565)
Q Consensus 106 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 184 (565)
++-.+-.++++|.++ +..|..+..+++++.|.+...++. .+|+.++.+++|++|.+++|++..+..++..++.|+.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 344566677777765 456666677777777777766665 567777777777777777777766655666777777777
Q ss_pred ccCCcccc-cCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccC
Q 037786 185 ISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGS 263 (565)
Q Consensus 185 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 263 (565)
+..|++.. -+|..+..+..|+.||++.|.+. ..|..+..-+++-+|++++|++...+..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~------------------- 144 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNS------------------- 144 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCch-------------------
Confidence 77666542 24555556666677777776665 4555555556666666666666543322
Q ss_pred CchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC--CCCchh
Q 037786 264 IPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS--AFPSFL 341 (565)
Q Consensus 264 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~ 341 (565)
.+.++..|-.|++++|.+.. .++ ....+..|+.|++++|++.......+ .++.+|+.|.+++.+=+ .+|..+
T Consensus 145 ---lfinLtDLLfLDLS~NrLe~-LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 145 ---LFINLTDLLFLDLSNNRLEM-LPP-QIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred ---HHHhhHhHhhhccccchhhh-cCH-HHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCch
Confidence 23344444445555554432 222 23444455555555554433222222 44455556666655432 455555
Q ss_pred hcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEEcCCCcccccCCCCCCCCcEEE
Q 037786 342 RSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSNLLQGPLPVPPPRLQFLL 418 (565)
Q Consensus 342 ~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~ 418 (565)
... +|..+|++.|.+. .+|..++ ..++|++|+||+|+|+.+... .|.+|++|+++.|+++
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-------------- 281 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-------------- 281 (1255)
T ss_pred hhhhhhhhccccccCCC-cchHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc--------------
Confidence 444 7777788877777 7777777 457888888888887776653 5666666666555554
Q ss_pred ccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC--Ccc--cCCCcccEEECCCCcccccCCC---CC
Q 037786 419 ASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK--MKQ--ISWKNLGYLDLRSNLLQGPLLV---PP 491 (565)
Q Consensus 419 l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~--~~~~~L~~L~ls~n~l~~~~~~---~~ 491 (565)
..|..+|++ +.|+.|...+|+++- +|. +.+.+|+++..++|.+.- .|. .|
T Consensus 282 --------~LP~avcKL--------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC 338 (1255)
T KOG0444|consen 282 --------VLPDAVCKL--------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRC 338 (1255)
T ss_pred --------cchHHHhhh--------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-Cchhhhhh
Confidence 456666666 666666666665543 344 555666666666666532 333 56
Q ss_pred CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC
Q 037786 492 SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~ 537 (565)
..|+.|.+++|++- ..|+++.-++-|++||+..|+.. ..|+-.+
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~ 382 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPPKPN 382 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCCCcc
Confidence 66677777777754 36778888888888888888877 5565554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.7e-23 Score=228.31 Aligned_cols=334 Identities=20% Similarity=0.216 Sum_probs=268.9
Q ss_pred CCCCCcCCCCCCEEEccccccc------CCCchhhcCC-CCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCch
Q 037786 194 IPSHGSGLQNLAVLRLYNNTLS------GTIPSWLFTL-PLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPS 266 (565)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~l~------~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 266 (565)
.+..|..+++|+.|.+..+... ...+..+..+ ++|+.|++.++++...+..+.+.+|++|++.++.+. .++.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cccc
Confidence 3445788999999998765321 2244445554 469999999999988887788899999999999987 5666
Q ss_pred hhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCC-CCCCCchhhccc
Q 037786 267 SIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN-ISAFPSFLRSLE 345 (565)
Q Consensus 267 ~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~ 345 (565)
.+..+++|+.++++++.....++ .++.+++|+.|++++|......+..+ ..+++|+.|++++|. +..+|......+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 77889999999999886544544 36788999999999987655555544 778999999999974 667887665559
Q ss_pred cceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccc----------cCCCCCCCC
Q 037786 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQG----------PLPVPPPRL 414 (565)
Q Consensus 346 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~----------~~~~~~~~L 414 (565)
|+.|++++|.....+|.. ..+|+.|++++|.++.++.. .+++|++|++.++.... .....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc-----cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 999999999766566542 46899999999999988874 67899999998754221 111236899
Q ss_pred cEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCC-CCCCcc-cCCCcccEEECCCCcccccCCCCCC
Q 037786 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF-ITKMKQ-ISWKNLGYLDLRSNLLQGPLLVPPS 492 (565)
Q Consensus 415 ~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~ 492 (565)
+.|++++|.....+|..+..+ ++|++|++++|. +..+|. ..+++|+.|++++|.....+|..++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L--------------~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNL--------------HKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred hheeCCCCCCccccChhhhCC--------------CCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence 999999998887888888888 999999999985 555565 5689999999999987666777788
Q ss_pred CCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCC
Q 037786 493 SLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRW 551 (565)
Q Consensus 493 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~ 551 (565)
+|+.|++++|.++ .+|..+..+++|+.|++++|+....+|..+..+++|+.+++.+|.
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999999999998 578889999999999999988887899999999999999988864
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.3e-21 Score=216.59 Aligned_cols=336 Identities=24% Similarity=0.275 Sum_probs=178.6
Q ss_pred chhhhhcCCCccEEEccCCc------ccccCCccccCCC-CCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccC
Q 037786 27 PGTLKNLSSSLTSLSLSYCR------IQGEFPENIFRLS-NLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQL 99 (565)
Q Consensus 27 ~~~~~~l~~~L~~L~l~~~~------i~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 99 (565)
..+|.++ ++|+.|.+.++. +....|..+..++ +|+.|.+.++ .. ..++......+|++|++.++.+. .+
T Consensus 551 ~~aF~~m-~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l-~~lP~~f~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGM-RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PL-RCMPSNFRPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcC-ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CC-CCCCCcCCccCCcEEECcCcccc-cc
Confidence 3445544 555555554331 1112334444433 3555555544 22 22222233455555555555554 34
Q ss_pred CccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCC
Q 037786 100 PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTR 179 (565)
Q Consensus 100 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 179 (565)
+..+..+++|+.|+++++......| .+..+++|+.|++++|.....+|..+..+++|+.|++++|......+...++++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 5555556666666665544322333 245556666666666554445555566666666666665543222333225566
Q ss_pred CCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC---------CCCCCCCC
Q 037786 180 ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL---------DAFPSKSL 250 (565)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~~~~~~L 250 (565)
|+.|++++|......|.. ..+|+.|+++++.+. ..|..+ .+++|+.|.+.++...... ....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 666666665433333321 245666666666654 233322 3455666665543321110 01134567
Q ss_pred cEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcC
Q 037786 251 RKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330 (565)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 330 (565)
+.|++++|.....+|..+.++++|+.|++++|.....++.. ..+++|+.|++++|......+ ....+++.|+++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p----~~~~nL~~L~Ls 854 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTFP----DISTNISDLNLS 854 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCcccccc----ccccccCEeECC
Confidence 77777777666567777777788888888777544344322 256777777777764322111 223567777777
Q ss_pred CCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCC
Q 037786 331 ACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380 (565)
Q Consensus 331 ~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 380 (565)
+|.++.+|..+... +|+.|++++|+-...+|.... .+++|+.+++++|
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C 903 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDC 903 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCC
Confidence 77777777655544 677777777543334554433 3466667777666
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=9.5e-25 Score=198.83 Aligned_cols=405 Identities=19% Similarity=0.160 Sum_probs=181.2
Q ss_pred CEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC-ccccccCcC-CcCCCCCCEEeccC
Q 037786 110 RELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS-NSFDGQFPD-IMNLTRISRLDISN 187 (565)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~l~~ 187 (565)
.+++|..|.|+.+.+.+|+.+++|+.||+++|.|+.+.|.+|.+++++..|-+.+ |+++.+... |+++..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4444444444444444444444444444444444444444444444444443333 444433333 44444444444444
Q ss_pred CcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--------------CCCCCcEE
Q 037786 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--------------PSKSLRKL 253 (565)
Q Consensus 188 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~L~~L 253 (565)
|++.-+....|..++++..|.+.+|.+.......|..+..++.+++..|++....... ......-.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 4444333444444455555555555444333334444555555555444432111000 00001111
Q ss_pred EccCCccccCCchhhhc-CCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCC
Q 037786 254 YLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSAC 332 (565)
Q Consensus 254 ~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 332 (565)
.+.+.++...-+..+.. ...+.+=-.+.+......+...|..+++|++|++++|+++......+ .....+++|.+..|
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcc
Confidence 11111111111111111 11221112223333344455566666666666666666654333332 55556666666666
Q ss_pred CCCCCCchhhcc--ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC
Q 037786 333 NISAFPSFLRSL--ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP 410 (565)
Q Consensus 333 ~l~~l~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 410 (565)
++..+...+..- .|+.|++.+|+++...|.++. ...+|.+|++-.|++.---...| |.. .+.+.+-.+..++.
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~l~~l~l~~Np~~CnC~l~w--l~~-Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFSLSTLNLLSNPFNCNCRLAW--LGE-WLRKKSVVGNPRCQ 383 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEeccccc--ccceeeeeehccCcccCccchHH--HHH-HHhhCCCCCCCCCC
Confidence 555443322211 455555555555533333322 22344444443333221100000 000 00111111122222
Q ss_pred -CCCCcEEEccccccCc---cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccc
Q 037786 411 -PPRLQFLLASNNQFTG---EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 411 -~~~L~~L~l~~n~i~~---~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~ 485 (565)
|-.++.++++...+.+ ..++..+-....- ...+++.+.++.=..|+.... |.+....-+++++.+|.++.
T Consensus 384 ~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~-----cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~ 458 (498)
T KOG4237|consen 384 SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP-----CPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITS 458 (498)
T ss_pred CCchhccccchhccccccccCCccccCCCCCCC-----CCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcc
Confidence 5566666666664432 2222221111111 111224555444444444444 66555677788888888765
Q ss_pred cCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 486 PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 486 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
...+.+.+| .+|+++|+++...-..|.++++|.+|-|++|
T Consensus 459 vp~~~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 459 VPDELLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCHHHHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 322366777 8888888887666677888888888888775
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.5e-21 Score=202.32 Aligned_cols=264 Identities=23% Similarity=0.270 Sum_probs=186.6
Q ss_pred CCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccC
Q 037786 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 306 (565)
.-..|+++++.+...+... ..+++.|++.+|.++ .+|. ..++|++|++++|.++.. +. ..++|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL-P~----lp~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV----LPPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc-cC----cccccceeeccC
Confidence 3456666666666433322 246777777777766 3443 246777777777777643 21 235777778877
Q ss_pred CccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc
Q 037786 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK 386 (565)
Q Consensus 307 ~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 386 (565)
|.++... ..+..|+.|++++|+++.+|.. ..+|+.|++++|+++ .+|. .+..|+.|++++|.++.++
T Consensus 272 N~L~~Lp-----~lp~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N~L~-~Lp~-----lp~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 272 NPLTHLP-----ALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLA-SLPA-----LPSELCKLWAYNNQLTSLP 338 (788)
T ss_pred Cchhhhh-----hchhhcCEEECcCCcccccccc--ccccceeECCCCccc-cCCC-----CcccccccccccCcccccc
Confidence 7765321 1235677788888888777653 236888888888887 4443 1356788888888888776
Q ss_pred CCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 387 QIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 387 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
.. ..+|+.|++++|++.. +|..+++|+.|++++|++++ +|.. . .+|+.|++++|.+..+|
T Consensus 339 ~l-p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~-LP~l---~--------------~~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 339 TL-PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTS-LPAL---P--------------SGLKELIVSGNRLTSLP 398 (788)
T ss_pred cc-ccccceEecCCCccCC-CCCCCcccceehhhcccccc-Cccc---c--------------cccceEEecCCcccCCC
Confidence 42 2578888888888874 56667888888888888873 2221 1 57889999999988876
Q ss_pred ccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCC
Q 037786 467 QISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536 (565)
Q Consensus 467 ~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l 536 (565)
. ..++|+.|++++|.+++ +|..+.+|+.|++++|.++ .+|..+.++++|+.|+|++|++.+..|..+
T Consensus 399 ~-l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 399 V-LPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred C-cccCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4 24689999999999876 6666778899999999998 578888999999999999999987766554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-23 Score=192.01 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=81.9
Q ss_pred hhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCC
Q 037786 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 31 ~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (565)
.++|+....+.|..|+|+.+.+.+|..+++|++|+||+| .|+.+.|++|..++.+.
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N------------------------~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN------------------------NISFIAPDAFKGLASLL 118 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceeccccc------------------------chhhcChHhhhhhHhhh
Confidence 345667777777777777666677777777766666554 44445566666666655
Q ss_pred EEEccc-ccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCC
Q 037786 111 ELHLSQ-CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNN 188 (565)
Q Consensus 111 ~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 188 (565)
+|.+.+ |.|+.....+|.++..++.|.+.-|.+.....++|..++++..|.+..|.+..+... +..+..++.+.+..|
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 555544 556655556666666666666666666555555566666666666666665544442 555555555555444
Q ss_pred c
Q 037786 189 Q 189 (565)
Q Consensus 189 ~ 189 (565)
.
T Consensus 199 p 199 (498)
T KOG4237|consen 199 P 199 (498)
T ss_pred c
Confidence 3
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3e-20 Score=192.65 Aligned_cols=260 Identities=24% Similarity=0.256 Sum_probs=212.2
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEE
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL 327 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 327 (565)
..-..|+++++.++ .+|..+. ++|+.|++.+|.++.. + ...++|++|++++|+++... ...++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P----~lp~~Lk~LdLs~N~LtsLP-----~lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-P----ALPPELRTLEVSGNQLTSLP-----VLPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-C----CCCCCCcEEEecCCccCccc-----Cccccccee
Confidence 34567899999998 6777665 4899999999999853 3 23589999999999988542 235789999
Q ss_pred EcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccC
Q 037786 328 SLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL 407 (565)
Q Consensus 328 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~ 407 (565)
++++|.+..+|... ..|+.|++++|+++ .+|. .+++|+.|++++|+++.++. ...+|+.|++++|.+.. +
T Consensus 268 ~Ls~N~L~~Lp~lp--~~L~~L~Ls~N~Lt-~LP~-----~p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 268 SIFSNPLTHLPALP--SGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTS-L 337 (788)
T ss_pred eccCCchhhhhhch--hhcCEEECcCCccc-cccc-----cccccceeECCCCccccCCC-CcccccccccccCcccc-c
Confidence 99999999887633 37999999999998 5664 24789999999999999865 34579999999999975 6
Q ss_pred CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccC
Q 037786 408 PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPL 487 (565)
Q Consensus 408 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~ 487 (565)
|..+++|++|++++|++++ +|. +| ++|+.|++++|.+..+|. ...+|+.|++++|.+++ +
T Consensus 338 P~lp~~Lq~LdLS~N~Ls~-LP~---------lp--------~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 338 PTLPSGLQELSVSDNQLAS-LPT---------LP--------SELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTS-L 397 (788)
T ss_pred cccccccceEecCCCccCC-CCC---------CC--------cccceehhhccccccCcc-cccccceEEecCCcccC-C
Confidence 6677899999999999984 222 11 688999999999998875 24689999999999986 6
Q ss_pred CCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcccc
Q 037786 488 LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATT 555 (565)
Q Consensus 488 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~ 555 (565)
|..+++|+.|++++|.++. +|.. ..+|+.|++++|.+. .+|+.+..+++|+.+++.+..+.+.
T Consensus 398 P~l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 398 PVLPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCcccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 6677899999999999985 5543 357899999999998 8999999999999999998766544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.3e-19 Score=187.40 Aligned_cols=243 Identities=25% Similarity=0.293 Sum_probs=126.5
Q ss_pred CCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccC
Q 037786 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 306 (565)
+...|+++++.+...+.. .++.++.|++++|.++ .+|..+. .+|+.|++++|.+... +. .+ .++|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~-~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PA-TL--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Ch-hh--hccccEEECcC
Confidence 455666666666643322 2345666777776666 3444332 3666666666666532 22 11 23566666666
Q ss_pred CccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc
Q 037786 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK 386 (565)
Q Consensus 307 ~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 386 (565)
|.+... +..+ ..+|+.|++++|+++.+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++.++
T Consensus 251 N~L~~L-P~~l---~s~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp----~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 251 NRITEL-PERL---PSALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIR-TLPAHLP----SGITHLNVQSNSLTALP 320 (754)
T ss_pred CccCcC-ChhH---hCCCCEEECcCCccCccccccC-CCCcEEECCCCccc-cCcccch----hhHHHHHhcCCccccCC
Confidence 665422 2211 2356666666666665554322 25666666666665 3443221 34566666666666555
Q ss_pred CCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 387 QIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 387 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
....++|+.|++++|.+.+.....+++|+.|++++|+++. +|..+ . +.|++|++++|.+..+|
T Consensus 321 ~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~-LP~~l--p--------------~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 321 ETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITV-LPETL--P--------------PTITTLDVSRNALTNLP 383 (754)
T ss_pred ccccccceeccccCCccccCChhhcCcccEEECCCCCCCc-CChhh--c--------------CCcCEEECCCCcCCCCC
Confidence 4444556666666665554222234566666666665542 22211 1 45666666666666554
Q ss_pred ccCCCcccEEECCCCcccccCCC-------CCCCCcEeeccCceee
Q 037786 467 QISWKNLGYLDLRSNLLQGPLLV-------PPSSLRVILILNNQFT 505 (565)
Q Consensus 467 ~~~~~~L~~L~ls~n~l~~~~~~-------~~~~L~~L~l~~n~~~ 505 (565)
.....+|+.|++++|.+.. +|. ..+.+..|++.+|+++
T Consensus 384 ~~l~~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLPAALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHHHHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4222355566666665543 222 2345555666666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=9.3e-19 Score=182.87 Aligned_cols=245 Identities=25% Similarity=0.264 Sum_probs=159.8
Q ss_pred CCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEE
Q 037786 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILS 328 (565)
Q Consensus 249 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 328 (565)
+...|+++++.++ .+|..+. ++++.|++++|.++.. +... ..+|+.|++++|.++.. +..+ .+.|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l---~~nL~~L~Ls~N~LtsL-P~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENL---QGNIKTLYANSNQLTSI-PATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhh---ccCCCEEECCCCccccC-Chhh---hccccEEE
Confidence 4566777777776 4554443 4677788888777643 3222 24778888887777632 2222 34677788
Q ss_pred cCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC
Q 037786 329 LSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 329 l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 408 (565)
+++|.+..+|..+. ..|+.|++++|+++ .+|..+. ++|+.|++++|+++.++....++|+.|++++|.+.....
T Consensus 248 Ls~N~L~~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~----~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 248 LSINRITELPERLP-SALQSLDLFHNKIS-CLPENLP----EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred CcCCccCcCChhHh-CCCCEEECcCCccC-ccccccC----CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc
Confidence 88887777765443 26778888877777 5665432 467888888887777765444567778888877775333
Q ss_pred CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCC
Q 037786 409 VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 409 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~ 488 (565)
..+++|++|++++|.+++ +|..+. ++|+.|++++|++..+|....++|+.|++++|.++. +|
T Consensus 322 ~l~~sL~~L~Ls~N~Lt~-LP~~l~----------------~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-LP 383 (754)
T PRK15370 322 TLPPGLKTLEAGENALTS-LPASLP----------------PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-LP 383 (754)
T ss_pred cccccceeccccCCcccc-CChhhc----------------CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-CC
Confidence 346778888888887764 332221 677788888887776665444678888888887775 34
Q ss_pred C-CCCCCcEeeccCceeeeccchh----hhcCCCCCEEeCCCCcCc
Q 037786 489 V-PPSSLRVILILNNQFTGEIIHS----ICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 489 ~-~~~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~L~l~~n~~~ 529 (565)
. ...+|+.|++++|+++ .+|.. +...+++..|++.+|++.
T Consensus 384 ~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 4456777888888776 33433 334477778888888764
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=5.2e-17 Score=158.22 Aligned_cols=276 Identities=24% Similarity=0.234 Sum_probs=146.7
Q ss_pred EEEcCCCcCCCCCc-hhhhhcCCCccEEEccCCccccc----CCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEE
Q 037786 14 LLFLDYVDMSTVVP-GTLKNLSSSLTSLSLSYCRIQGE----FPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCL 88 (565)
Q Consensus 14 ~L~l~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 88 (565)
.|+|.++.+.+... ..+..+ .+|++++++++.++.. ++..+...+++++++++++ ......
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~------------ 67 (319)
T cd00116 2 QLSLKGELLKTERATELLPKL-LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIP------------ 67 (319)
T ss_pred ccccccCcccccchHHHHHHH-hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcc------------
Confidence 46777777764443 334444 7788899888887532 4445666777888888776 222100
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCC---CCeeeccCCcccc----cCCcCccCC-CCCCEE
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQ---LAVLSLSFKSFSG----HIPPSLSNL-HQLTDV 160 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L 160 (565)
..+ ..++..+..+++|++|++++|.+....+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.+
T Consensus 68 ----~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 68 ----RGL-QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred ----hHH-HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 000 122333444555555555555544333333333333 5555555555441 111223333 555555
Q ss_pred EccCcccccc-----CcCCcCCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCC----CchhhcCCCC
Q 037786 161 DLGSNSFDGQ-----FPDIMNLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGT----IPSWLFTLPL 227 (565)
Q Consensus 161 ~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~ 227 (565)
++++|.+... ...+..+++|+.|++++|.+.+. .+..+..++.|+.|++++|.+.+. ....+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 5555555411 11134445566666666555421 112233345666666666655422 2233445666
Q ss_pred CCEEEccCCcccccCCC-------CCCCCCcEEEccCCccccC----CchhhhcCCCcCccccccccccCccC---hHhh
Q 037786 228 LRDIDLSDNQLTGHLDA-------FPSKSLRKLYLTNNRLHGS----IPSSIFELANLTYLSLASNNFSGIVE---PYML 293 (565)
Q Consensus 228 L~~L~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l 293 (565)
|+.|++++|.+.+.... ...+.|++|++.+|.+++. +...+..+++|+.+++++|.+..... ...+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 77777777766531100 0236777888887777632 23345556788888888888874411 1233
Q ss_pred hcC-CCCCEEEccCCc
Q 037786 294 AKL-VNLAALELSHNS 308 (565)
Q Consensus 294 ~~~-~~L~~L~l~~~~ 308 (565)
... +.|+++++.+++
T Consensus 303 ~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 303 LEPGNELESLWVKDDS 318 (319)
T ss_pred hhcCCchhhcccCCCC
Confidence 444 678888887765
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=7.5e-17 Score=157.07 Aligned_cols=251 Identities=22% Similarity=0.207 Sum_probs=174.7
Q ss_pred CCcEEEccCCccCc----cCCccccCCCCCCEEEcccccCcc------cCchhccCCCCCCeeeccCCcccccCCcCccC
Q 037786 84 PLRCLDVSGTRFSG----QLPDSICNLRHLRELHLSQCNFYG------FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSN 153 (565)
Q Consensus 84 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (565)
.|++++++++.++. .++..+...+++++++++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 34445555554432 234455667778888888776652 23456778999999999999987555555554
Q ss_pred CC---CCCEEEccCcccccc-----CcCCcCC-CCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCC---
Q 037786 154 LH---QLTDVDLGSNSFDGQ-----FPDIMNL-TRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGT--- 217 (565)
Q Consensus 154 l~---~L~~L~l~~~~~~~~-----~~~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~--- 217 (565)
+. +|+.|++++|.+... ...+..+ ++|+.+++++|.+++. ....+..+++|++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 44 499999999988631 1124566 8999999999998732 334566778999999999988743
Q ss_pred -CchhhcCCCCCCEEEccCCcccccCC------CCCCCCCcEEEccCCccccCCchhhhc-----CCCcCcccccccccc
Q 037786 218 -IPSWLFTLPLLRDIDLSDNQLTGHLD------AFPSKSLRKLYLTNNRLHGSIPSSIFE-----LANLTYLSLASNNFS 285 (565)
Q Consensus 218 -~~~~l~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~ 285 (565)
....+..+++|+.|++++|.+.+... ....++|++|++++|.+++.....+.. .+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 22334566799999999998864321 115688999999999988633333322 379999999999986
Q ss_pred CccC---hHhhhcCCCCCEEEccCCccccccCCcc---cCCC-CCccEEEcCCCCC
Q 037786 286 GIVE---PYMLAKLVNLAALELSHNSLSFGTTSKV---NSSF-PQIFILSLSACNI 334 (565)
Q Consensus 286 ~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~~---~~~~-~~L~~L~l~~~~l 334 (565)
+... ...+..+++|+.+++++|.++......+ .... +.++.+++.++.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3221 2345667899999999999986533322 2334 6788888887753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=8.3e-17 Score=130.39 Aligned_cols=156 Identities=30% Similarity=0.419 Sum_probs=118.6
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
.+++.|.+|+|+++ ..|..++.+.+|+.|+++.| .+.+.......+++|++|+++-|++. ..|..|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 56777888888887 66667888888888888877 55666666666677777777777766 67888888888888888
Q ss_pred ccccCc-ccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCccccc
Q 037786 115 SQCNFY-GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 115 ~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
+.|.+. ...|..|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+...+.+++.+..|++|.+++|+++ .
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-e
Confidence 877753 456777777788888888888776 6777788888888888888877767777778888888888888777 4
Q ss_pred CC
Q 037786 194 IP 195 (565)
Q Consensus 194 ~~ 195 (565)
+|
T Consensus 188 lp 189 (264)
T KOG0617|consen 188 LP 189 (264)
T ss_pred cC
Confidence 44
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3.2e-16 Score=126.99 Aligned_cols=165 Identities=26% Similarity=0.440 Sum_probs=146.2
Q ss_pred CCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcE
Q 037786 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRC 87 (565)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 87 (565)
.+.+++.|.+|+|.++...+ .+..+ .+|++|++++|+|+ ..|..++.+++|+.|++.-| .+......+...+.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 46678899999999987766 46777 89999999999998 78999999999999999988 77778888888899999
Q ss_pred EEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc
Q 037786 88 LDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166 (565)
Q Consensus 88 L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (565)
||+++|.+. ..+|..|..+..|+-|+++.|.+. ..|..++++++||.|.+..|.+. .+|..++.++.|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 999999875 467888888999999999999986 77888999999999999999987 689999999999999999999
Q ss_pred ccccCcCCcCCC
Q 037786 167 FDGQFPDIMNLT 178 (565)
Q Consensus 167 ~~~~~~~~~~~~ 178 (565)
++..+++++.+.
T Consensus 185 l~vlppel~~l~ 196 (264)
T KOG0617|consen 185 LTVLPPELANLD 196 (264)
T ss_pred eeecChhhhhhh
Confidence 998888766543
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.2e-12 Score=122.27 Aligned_cols=195 Identities=21% Similarity=0.192 Sum_probs=93.8
Q ss_pred cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCch---hhcc-ccceEeccCCcCcccCChhhhhhCCC
Q 037786 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF---LRSL-ELAYLDLSENNIDGQIPNWMWEVGKD 370 (565)
Q Consensus 295 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~---~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~ 370 (565)
++.+|+++.+.++.+...........++.++.|++++|-+..+... +... +|+.|+++.|.+..-... ......+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhh
Confidence 3445555666665555443333445556666666666554432221 1111 556666666655421111 1111335
Q ss_pred CccEEEcCCCccCCccC----CCCCCCCeEEcCCCccc-cc--CCCCCCCCcEEEccccccCc-cchhhhhhcCCCCCCc
Q 037786 371 TLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQ-GP--LPVPPPRLQFLLASNNQFTG-EIIQSICSSSTLEIPS 442 (565)
Q Consensus 371 ~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~-~~--~~~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~~~~~~ 442 (565)
++++|.++.|.++.-.. ..||+|+.|++..|... .. ....+..|+.|||++|.+.. .....+..+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l------- 270 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL------- 270 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc-------
Confidence 66666666666653222 25677777777666321 11 11125666666666665542 111223333
Q ss_pred cccccCCCCCcEEeCcCCCCCCC--cc-------cCCCcccEEECCCCcccc--cCCC--CCCCCcEeeccCcee
Q 037786 443 WISEIGKDSLSYLNLSHNFITKM--KQ-------ISWKNLGYLDLRSNLLQG--PLLV--PPSSLRVILILNNQF 504 (565)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~--~~-------~~~~~L~~L~ls~n~l~~--~~~~--~~~~L~~L~l~~n~~ 504 (565)
+.|..|+++.|.+..+ |+ ..+++|+.|+++.|++.+ .+.+ .+.+|+.|.+..|.+
T Consensus 271 -------~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 271 -------PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred -------cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 5666666666666655 32 234555555555555533 1111 444445555444444
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=4.1e-12 Score=115.41 Aligned_cols=195 Identities=22% Similarity=0.221 Sum_probs=100.6
Q ss_pred hhhcCCCCCEEEccCCccccccCCcc---cCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhC
Q 037786 292 MLAKLVNLAALELSHNSLSFGTTSKV---NSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368 (565)
Q Consensus 292 ~l~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 368 (565)
.+..+++|+++++|+|-+...+++.+ ..++..|++|++.+|.+.......-...|..+. .+... + .
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk~---~------~ 155 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKKA---A------S 155 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhcc---C------C
Confidence 45556677777777776654444332 345666777777777665322211111222222 11111 0 2
Q ss_pred CCCccEEEcCCCccCCccCC-------CCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCC
Q 037786 369 KDTLSFLDLSHNFITEMKQI-------PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIP 441 (565)
Q Consensus 369 ~~~L~~L~ls~n~l~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 441 (565)
.+.|+.+....|++.+-+.. ..+.|+.+.+..|.|....- ......+.++
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-----------------~al~eal~~~------ 212 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-----------------TALAEALEHC------ 212 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh-----------------HHHHHHHHhC------
Confidence 35555665555555544441 22455555555554432111 1223344444
Q ss_pred ccccccCCCCCcEEeCcCCCCCCCc-c------cCCCcccEEECCCCcccccC--------CCCCCCCcEeeccCceeee
Q 037786 442 SWISEIGKDSLSYLNLSHNFITKMK-Q------ISWKNLGYLDLRSNLLQGPL--------LVPPSSLRVILILNNQFTG 506 (565)
Q Consensus 442 ~~~~~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~ls~n~l~~~~--------~~~~~~L~~L~l~~n~~~~ 506 (565)
++|+.|||.+|.++... . ..|++|+++++++|-+.+.- -...++|+.|.+.+|.++-
T Consensus 213 --------~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 213 --------PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred --------CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 66666666666555441 1 55666666666666654211 1155666777777766653
Q ss_pred c----cchhhhcCCCCCEEeCCCCcC
Q 037786 507 E----IIHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 507 ~----~~~~l~~~~~L~~L~l~~n~~ 528 (565)
. +..+....+.|++|+|++|.+
T Consensus 285 da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 285 DAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3 334455667888888888887
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.7e-12 Score=118.95 Aligned_cols=115 Identities=28% Similarity=0.261 Sum_probs=48.4
Q ss_pred cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC--Cchhhccccc
Q 037786 270 ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF--PSFLRSLELA 347 (565)
Q Consensus 270 ~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~~~L~ 347 (565)
.+|+|+.|+++.|.+........-..+++|+.|.+++|.++..........+|+++.|++.+|....+ ......+.|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 44555555555555443322222234445555555555554333333334455555555555531100 0111111455
Q ss_pred eEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCc
Q 037786 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 348 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 385 (565)
.|++++|++. ..++......++.|+.|+++.|.+.++
T Consensus 250 ~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 250 ELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred hccccCCccc-ccccccccccccchhhhhccccCcchh
Confidence 5555555544 222222222344455555555544444
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=7.8e-11 Score=100.60 Aligned_cols=101 Identities=27% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCccEEEcCCCccCCccCC--CCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccc
Q 037786 370 DTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446 (565)
Q Consensus 370 ~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~ 446 (565)
..+++|+|++|.|+.+... .+.+|+.|++++|.+..... ..++.|++|++++|+|+.........+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l----------- 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL----------- 87 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH------------
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC-----------
Confidence 4455666666666555443 24556666666666554221 125556666666666654322111234
Q ss_pred cCCCCCcEEeCcCCCCCCCcc----cCCCcccEEECCCCccc
Q 037786 447 IGKDSLSYLNLSHNFITKMKQ----ISWKNLGYLDLRSNLLQ 484 (565)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~ls~n~l~ 484 (565)
|+|++|++++|+|.++.. ..+++|+.|++.+|++.
T Consensus 88 ---p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 ---PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ---TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ---CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 566666666666655521 44555555555555544
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=3.6e-12 Score=115.79 Aligned_cols=232 Identities=20% Similarity=0.224 Sum_probs=129.1
Q ss_pred HHhhCCCCCcEEEcCCCcCCCCCchhhhhcC---CCccEEEccCCcccc----cC-------CccccCCCCCCEEecCCC
Q 037786 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLS---SSLTSLSLSYCRIQG----EF-------PENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~~L~~L~l~~~~i~~----~~-------~~~~~~l~~L~~L~L~~~ 69 (565)
..+..+..++.+++|+|.+......++.... ++|+..++++- +++ .+ ..++..+++|++|+||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4455667777788888877765544443332 45666666553 222 11 233445566666666665
Q ss_pred CCCCccCCCCCCCCCCcEEEccCCccCccCC----ccccCCCCCCEEEcccccCcccCchh-------------ccCCCC
Q 037786 70 SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLP----DSICNLRHLRELHLSQCNFYGFLPAS-------------LGNVTQ 132 (565)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~-------------~~~l~~ 132 (565)
-+....+ ..+.++..|++|.|.+|.+....... .+.-+.
T Consensus 103 ------------------------A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 103 ------------------------AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred ------------------------ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 3221111 22345666666666666654322222 233456
Q ss_pred CCeeeccCCccccc----CCcCccCCCCCCEEEccCccccccC-----cCCcCCCCCCEEeccCCccccc----CCCCCc
Q 037786 133 LAVLSLSFKSFSGH----IPPSLSNLHQLTDVDLGSNSFDGQF-----PDIMNLTRISRLDISNNQLTGS----IPSHGS 199 (565)
Q Consensus 133 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 199 (565)
|+++...+|++... +...|...+.|+.+.+..|.+.... ..+..+++|+.|++.+|.++.. +...++
T Consensus 159 Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 77777777765522 2334555667777777777664211 1256677777777777766522 334455
Q ss_pred CCCCCCEEEcccccccCCCchhh-----cCCCCCCEEEccCCcccccCC------CCCCCCCcEEEccCCcc
Q 037786 200 GLQNLAVLRLYNNTLSGTIPSWL-----FTLPLLRDIDLSDNQLTGHLD------AFPSKSLRKLYLTNNRL 260 (565)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~ 260 (565)
.+++|+.+++++|.+.......+ ...|+|+++.+.+|.+..... ....+.|+.|++++|.+
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 56677777777776653322222 135677777777777653211 11356777777777777
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=5.2e-11 Score=101.66 Aligned_cols=130 Identities=29% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCCC-
Q 037786 332 CNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPV- 409 (565)
Q Consensus 332 ~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~- 409 (565)
+.|..++.......+++|++.+|.++ .+..... .+.+|+.|++++|.++++... .++.|+.|++++|++....+.
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie~L~~--~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIS-TIENLGA--TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ------------------------------S--T--T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccccccccccc-cccchhh--hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccch
Confidence 33334444333335566666666665 2221111 235666666666666666653 556677777777776654321
Q ss_pred --CCCCCcEEEccccccCccc-hhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc------cCCCcccEEEC
Q 037786 410 --PPPRLQFLLASNNQFTGEI-IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ------ISWKNLGYLDL 478 (565)
Q Consensus 410 --~~~~L~~L~l~~n~i~~~~-~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~L~~L~l 478 (565)
.+|+|++|++++|+|.... ...+..+ ++|++|++.+|+++..+. ..+|+|+.||-
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l--------------~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSL--------------PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG---------------TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcC--------------CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 2667777777777665421 2334444 777778887777776643 55677777754
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2.1e-11 Score=108.33 Aligned_cols=125 Identities=25% Similarity=0.336 Sum_probs=72.5
Q ss_pred CCCCCCeEEcCCCcccccCCC--CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 389 PWKNLKYLKLQSNLLQGPLPV--PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
.|..|+.+|+++|.|...... ..|.++.|++++|.|.. .+.+..+ ++|.+||+|+|.++.+.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L--------------~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAEL--------------PQLQLLDLSGNLLAECV 345 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhc--------------ccceEeecccchhHhhh
Confidence 344455555555555432211 25666666666666552 2224555 66666666666666663
Q ss_pred c--cCCCcccEEECCCCcccccCCC-CCCCCcEeeccCceeeec-cchhhhcCCCCCEEeCCCCcCc
Q 037786 467 Q--ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTGE-IIHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 467 ~--~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~ 529 (565)
. ..+-+.+.|.+++|.+.+..-. .+=+|..||+++|+|... -...++++|-|+.+.|.+||+.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 2 4455666666776666442211 556666777777776433 2356677777778888888776
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=5.8e-12 Score=121.46 Aligned_cols=203 Identities=26% Similarity=0.250 Sum_probs=158.3
Q ss_pred EEcCCCCCCCCCchhhcc---ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEEcCCC
Q 037786 327 LSLSACNISAFPSFLRSL---ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSN 401 (565)
Q Consensus 327 L~l~~~~l~~l~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n 401 (565)
|.+++-++..+|...... .-...+++.|.+. ++|..... +..|+.+.+..|.+..++.. .+..|+.+|++.|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 445555555555433333 3457789999998 88877664 47799999999999988884 7788999999999
Q ss_pred cccccCCCC-CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEEC
Q 037786 402 LLQGPLPVP-PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDL 478 (565)
Q Consensus 402 ~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l 478 (565)
+++...... .--|+.|.+++|+++ .+|..+... +.|..||.+.|.+..+|. +.+.+|+.|++
T Consensus 132 qlS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~--------------~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 132 QLSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLL--------------PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhcCChhhhcCcceeEEEecCccc-cCCcccccc--------------hhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 987543332 455899999999998 667777666 899999999999999954 88899999999
Q ss_pred CCCcccccCCC-CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCC
Q 037786 479 RSNLLQGPLLV-PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPS 549 (565)
Q Consensus 479 s~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~ 549 (565)
..|.+....++ ..-.|..||+|.|+++ .+|-+|..|..|++|-|.+||++ .-|..+--.-..++.+|..
T Consensus 197 rRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 197 RRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred hhhhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeec
Confidence 99998774444 5667889999999998 67888999999999999999998 7777765555666666655
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=8.7e-12 Score=120.24 Aligned_cols=187 Identities=25% Similarity=0.266 Sum_probs=149.7
Q ss_pred CCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCC-CCCCeEEc
Q 037786 321 FPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW-KNLKYLKL 398 (565)
Q Consensus 321 ~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~l 398 (565)
+.--...+++.|++..+|..+... .|+.+.+..|.+. .+|..+.. ...|+.+|++.|++..++...| --|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICN--LEALTFLDLSSNQLSHLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhh--hhHHHHhhhccchhhcCChhhhcCcceeEEE
Confidence 344456789999999998777666 8999999999998 78888774 5889999999999999998643 35899999
Q ss_pred CCCcccccCCC--CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccE
Q 037786 399 QSNLLQGPLPV--PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGY 475 (565)
Q Consensus 399 ~~n~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~ 475 (565)
++|++.....+ ..+.|..||.+.|.+. ..+..++.+ ..|+.|.+..|.+.++|. -..-.|..
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l--------------~slr~l~vrRn~l~~lp~El~~LpLi~ 215 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL--------------TSLRDLNVRRNHLEDLPEELCSLPLIR 215 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhH--------------HHHHHHHHhhhhhhhCCHHHhCCceee
Confidence 99998854333 3889999999999997 577778887 899999999999999965 22457899
Q ss_pred EECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCC---CCEEeCCCCc
Q 037786 476 LDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIA---LDVLDLSNNR 527 (565)
Q Consensus 476 L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~---L~~L~l~~n~ 527 (565)
||+|+|+++. +|. .+..|++|-|.+|+++ ..|..++..-. -++|++.-|.
T Consensus 216 lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 216 LDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eecccCceee-cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9999999987 444 8999999999999998 45555554433 3577777774
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.2e-10 Score=103.66 Aligned_cols=139 Identities=24% Similarity=0.256 Sum_probs=107.2
Q ss_pred CCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCc
Q 037786 197 HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTY 276 (565)
Q Consensus 197 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 276 (565)
.+...+.|+++|++.|.++ .+.+...-.|.++.|++++|.+.........++|+.|++++|.++ ....|-..+-+++.
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 3445577888888888887 455566777888888888888886665557788888888888887 45556667788999
Q ss_pred cccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCch
Q 037786 277 LSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF 340 (565)
Q Consensus 277 L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 340 (565)
|.+++|.+... ..+..+-+|..|++++|+|.......-.+.+|.|+++.+.+|.+..++..
T Consensus 357 L~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 357 LKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 99999988754 45778888999999999887555444458889999999999998866653
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=1.1e-09 Score=109.84 Aligned_cols=168 Identities=29% Similarity=0.371 Sum_probs=89.4
Q ss_pred CCccEEEcCCCCCCCCCchhhcc--ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEE
Q 037786 322 PQIFILSLSACNISAFPSFLRSL--ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLK 397 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~ 397 (565)
+.+..+++.++.++.++...... +|+.|++++|.+. .++..+. .++.|+.|++++|++.+++.. ..++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~--~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR--NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhh--ccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 55667777777777666655554 5666666666666 3332222 346666666666666666664 555666666
Q ss_pred cCCCcccccCCC--CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC--cccCCCcc
Q 037786 398 LQSNLLQGPLPV--PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM--KQISWKNL 473 (565)
Q Consensus 398 l~~n~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~L 473 (565)
+++|++....+. .+..|+++.+++|++. ..+..+... .++..|.+.+|++... ....++++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~--------------~~l~~l~l~~n~~~~~~~~~~~l~~l 257 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNL--------------KNLSGLELSNNKLEDLPESIGNLSNL 257 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhc--------------ccccccccCCceeeeccchhcccccc
Confidence 666666543333 2444555656555322 223333333 4555555555555553 22444455
Q ss_pred cEEECCCCcccccCCC-CCCCCcEeeccCceeeec
Q 037786 474 GYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTGE 507 (565)
Q Consensus 474 ~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~ 507 (565)
+.|++++|.++..... ...+++.|++++|.++..
T Consensus 258 ~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 258 ETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ceeccccccccccccccccCccCEEeccCcccccc
Confidence 5555555555442212 445555555555555433
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=5.6e-10 Score=119.51 Aligned_cols=268 Identities=26% Similarity=0.285 Sum_probs=154.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCC-CC-ccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN-LS-GVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
...+...+.++.+. ..+.+. .+++|++|-+..+.. .. .....+..++.|++||+++|.-.+.+|..++++-+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45677777777765 344433 345788888877732 22 222225556888888888876555788888888888888
Q ss_pred EcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCc---CCcCCCCCCEEeccCCc
Q 037786 113 HLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP---DIMNLTRISRLDISNNQ 189 (565)
Q Consensus 113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 189 (565)
+++++.+. ..|..+++++.|.+|++..+.....++.....+++|++|.+.......... .+..+.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 88888877 678888888888888888876655556666778888888886654221111 14445555555443322
Q ss_pred ccccCCCCCcCCCCCC----EEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-------C-CCCCcEEEccC
Q 037786 190 LTGSIPSHGSGLQNLA----VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-------P-SKSLRKLYLTN 257 (565)
Q Consensus 190 ~~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~-~~~L~~L~l~~ 257 (565)
.. ....+..++.|. .+.+.++... .....+..+.+|+.|.+.++.+.+..... . ++.+..+.+.+
T Consensus 680 ~~--~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 VL--LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred hH--hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 20 001112222222 2222222221 33445666777788888777775322211 1 22333333334
Q ss_pred CccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccc
Q 037786 258 NRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310 (565)
Q Consensus 258 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 310 (565)
|... ..+.+..-.++|+.+.+..|.....+.+ ....+..++.+.+..+.+.
T Consensus 757 ~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 757 CHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKELILPFNKLE 807 (889)
T ss_pred cccc-cccchhhccCcccEEEEecccccccCCC-HHHHhhhcccEEecccccc
Confidence 4322 2233344557788888887776555433 3444555555444444443
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=4.1e-09 Score=105.69 Aligned_cols=194 Identities=29% Similarity=0.395 Sum_probs=101.1
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCC-CCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVT-QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
.+++..+.+. .....+...+.++.|++.++.++.. +....... +|+.|+++++.+. .++..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3455555443 1122334445566666666655532 22233332 5666666666655 33345555666666666666
Q ss_pred cccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC-C
Q 037786 166 SFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD-A 244 (565)
Q Consensus 166 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~ 244 (565)
++....+..+..+.|+.+++++|++. .++........|+++.+++|.+. ..+..+..+.++..+.+.+|++..... .
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchh
Confidence 66544444445666666666666655 33333333344666666666432 233445555555566666665554222 2
Q ss_pred CCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCc
Q 037786 245 FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287 (565)
Q Consensus 245 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 287 (565)
...+.++.|++++|.++. ++. +....+++.++++++.+...
T Consensus 252 ~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 252 GNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccceeccccccccc-ccc-ccccCccCEEeccCcccccc
Confidence 234446666666666663 222 55566666666666666543
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.78 E-value=1.8e-08 Score=105.72 Aligned_cols=108 Identities=24% Similarity=0.248 Sum_probs=93.6
Q ss_pred CCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC
Q 037786 413 RLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV 489 (565)
Q Consensus 413 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~ 489 (565)
.++.|+|++|.+.+..+..++.+ ++|+.|+|++|.+.+. |. ..+++|+.|++++|.+++.+|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L--------------~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL--------------RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC--------------CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 47889999999999999999888 9999999999999866 64 7889999999999999987776
Q ss_pred ---CCCCCcEeeccCceeeeccchhhhcC-CCCCEEeCCCCcCcccCCC
Q 037786 490 ---PPSSLRVILILNNQFTGEIIHSICDI-IALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 490 ---~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~p~ 534 (565)
.+++|+.|++++|.+++.+|..+... .++..+++.+|+..|..|.
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 88999999999999999999888764 5778999999998876653
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.6e-09 Score=108.67 Aligned_cols=245 Identities=26% Similarity=0.197 Sum_probs=136.6
Q ss_pred hcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccce
Q 037786 269 FELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAY 348 (565)
Q Consensus 269 ~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~ 348 (565)
..+..++.+.++.|.+... ...+..+.+|+.+++.+|.+...... ...+++|++|++++|.|+.+........|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhh
Confidence 3455666666777766542 12356667777777777766533221 2456667777777777766655554445666
Q ss_pred EeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCcccccCCCC-CCCCcEEEcccccc
Q 037786 349 LDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPLPVP-PPRLQFLLASNNQF 424 (565)
Q Consensus 349 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~i 424 (565)
|++++|.++ .+...- .+..|+.+++++|.++.+.. ..+.+++.+++.+|.+....... ...+..+++..|.+
T Consensus 145 L~l~~N~i~-~~~~~~---~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLIS-DISGLE---SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcch-hccCCc---cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccc
Confidence 666666665 222211 14566666666666666666 45566666666666655322221 33344445555555
Q ss_pred CccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c-cCCCcccEEECCCCcccccC-CCCCCCCcEeeccC
Q 037786 425 TGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q-ISWKNLGYLDLRSNLLQGPL-LVPPSSLRVILILN 501 (565)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~l~~ 501 (565)
+...+...... ..|+++++++|.+...+ . ..+..+..++++.|++...- ......+..+....
T Consensus 221 ~~~~~l~~~~~--------------~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 221 SKLEGLNELVM--------------LHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLND 286 (414)
T ss_pred eeccCcccchh--------------HHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCc
Confidence 42221111000 12677777777777662 2 55667777777777765422 22566666666666
Q ss_pred ceeeec--cch--hhhcCCCCCEEeCCCCcCcccCCCC
Q 037786 502 NQFTGE--IIH--SICDIIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 502 n~~~~~--~~~--~l~~~~~L~~L~l~~n~~~~~~p~~ 535 (565)
|.+... ..+ .....+.++.+.+.+|++....+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred chhcchhhhhccccccccccccccccccCccccccccc
Confidence 665422 111 1455667777777777777544433
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=5.8e-09 Score=111.81 Aligned_cols=250 Identities=19% Similarity=0.201 Sum_probs=136.7
Q ss_pred CCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCc--cCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCee
Q 037786 59 SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR--FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVL 136 (565)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 136 (565)
...+...+.++ ..........++.|+.|-+.++. +.......|..++.|++|||++|.-....|..++++-+|++|
T Consensus 523 ~~~rr~s~~~~--~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNN--KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEecc--chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 44555555544 22333344444567777777774 443334446678888888888776666777888888888888
Q ss_pred eccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcc--cccCCCCCcCCCCCCEEEccccc
Q 037786 137 SLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQL--TGSIPSHGSGLQNLAVLRLYNNT 213 (565)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~ 213 (565)
+++++.+. .+|..++++..|.+|++..+......+. ...+++|++|.+..... +......+..+.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 88888777 6778888888888888877665444444 44477888877765431 11222233444445544443332
Q ss_pred ccCCCchhhcCCCCCC----EEEccCCcccccCCC-CCCCCCcEEEccCCccccCCchhh-----hc-CCCcCccccccc
Q 037786 214 LSGTIPSWLFTLPLLR----DIDLSDNQLTGHLDA-FPSKSLRKLYLTNNRLHGSIPSSI-----FE-LANLTYLSLASN 282 (565)
Q Consensus 214 l~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~-~~~L~~L~l~~n 282 (565)
. .....+....+|. .+.+.++........ ....+|+.|.+.+|.+......+. .. ++++..+.+.+|
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC 757 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence 2 0111122222222 222222332222222 255677888887777653221111 11 334555555555
Q ss_pred cccCccChHhhhcCCCCCEEEccCCccccccCC
Q 037786 283 NFSGIVEPYMLAKLVNLAALELSHNSLSFGTTS 315 (565)
Q Consensus 283 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 315 (565)
...... ......++|+.|.+.+|......+.
T Consensus 758 ~~~r~l--~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 758 HMLRDL--TWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cccccc--chhhccCcccEEEEecccccccCCC
Confidence 443332 2234457788888877765444333
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.8e-09 Score=108.22 Aligned_cols=255 Identities=21% Similarity=0.135 Sum_probs=175.4
Q ss_pred CCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCc-hhhccccceEe
Q 037786 272 ANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS-FLRSLELAYLD 350 (565)
Q Consensus 272 ~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~ 350 (565)
+..+.++...+.+..... . ...+..++.+.+..|.+.. ...-...+.+++.+++.+|.+..+.. .....+|++|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~-~-~~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ 124 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDED-L-VESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLD 124 (414)
T ss_pred chhhhhcchhccccchhh-h-HHHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchhee
Confidence 345555555554432211 1 1455667777787777764 12213667889999999999988877 33444899999
Q ss_pred ccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCC---CCCCCCcEEEccccccCc
Q 037786 351 LSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLP---VPPPRLQFLLASNNQFTG 426 (565)
Q Consensus 351 l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~i~~ 426 (565)
+++|.|+...+.. .++.|+.|++++|.++.+... .+.+|+.+++++|++....+ ..+.+++.+.+.+|.+..
T Consensus 125 ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 125 LSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccccccccccchh----hccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 9999988544433 345689999999999988886 57889999999998887666 568888888899988764
Q ss_pred cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCc--ccEEECCCCccccc--CCCCCCCCcEeeccC
Q 037786 427 EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKN--LGYLDLRSNLLQGP--LLVPPSSLRVILILN 501 (565)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~--L~~L~ls~n~l~~~--~~~~~~~L~~L~l~~ 501 (565)
... +... ..+..+++..|.+..+ +...... |+.+++++|.+... ....+..+..|++.+
T Consensus 201 i~~--~~~~--------------~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 201 IEG--LDLL--------------KKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred ccc--hHHH--------------HHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhh
Confidence 332 2222 4555668888888888 5444444 88999999988753 344788888999999
Q ss_pred ceeeeccchhhhcCCCCCEEeCCCCcCccc---CCCC-CCCCCCCcccccCCCCc
Q 037786 502 NQFTGEIIHSICDIIALDVLDLSNNRLSGT---IPKC-IGNFSPWCQTKWPSRWS 552 (565)
Q Consensus 502 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~---~p~~-l~~l~~L~~l~~~~~~~ 552 (565)
|.+.. ...+...+.+.++....|++... .... .+....+..........
T Consensus 265 n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 265 NRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 88853 34567778888888888887622 2221 44566666665555433
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.7e-08 Score=70.67 Aligned_cols=59 Identities=34% Similarity=0.496 Sum_probs=35.3
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKS 142 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 142 (565)
+|++|++++|.++...+..|..+++|++|++++|.+....+.+|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666654444555666666666666666665555566666666666666654
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=9.4e-10 Score=102.62 Aligned_cols=295 Identities=18% Similarity=0.137 Sum_probs=147.7
Q ss_pred CCCEEEccCCcccccCCC----CCCCCCcEEEccCCc-cccCCchh-hhcCCCcCcccccccc-ccCccChHhhhcCCCC
Q 037786 227 LLRDIDLSDNQLTGHLDA----FPSKSLRKLYLTNNR-LHGSIPSS-IFELANLTYLSLASNN-FSGIVEPYMLAKLVNL 299 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~L~l~~n~-~~~~~~~~~l~~~~~L 299 (565)
.|+.|.+.++.-.+.... ..++++++|.+.+|. +++..-.. -..|++|+.+++..|. ++.....+.-.+|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566666666654432221 145556666665553 22211111 1235666666666643 3322222233455666
Q ss_pred CEEEccCC-ccccccCCcccCCCCCccEEEcCCCCCCCCCchhh----ccccceEeccCCcCcccCChhhhhhCCCCccE
Q 037786 300 AALELSHN-SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLR----SLELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374 (565)
Q Consensus 300 ~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 374 (565)
++++++.| .+++.....+..++..++.+...+|.=........ +..+.++++.+|........+....++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~---- 294 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH---- 294 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh----
Confidence 66666655 23333333333444445554444443221111111 0123334433332111222222222334
Q ss_pred EEcCCCccCCccCCCCCCCCeEEcCCCcccccC-----CCCCCCCcEEEccccc-cCccchhhhhhcCCCCCCccccccC
Q 037786 375 LDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL-----PVPPPRLQFLLASNNQ-FTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 375 L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
.|+.++.+++...+.. -...++|+.+-+++|+ +++-.++.+...
T Consensus 295 -----------------~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn------------- 344 (483)
T KOG4341|consen 295 -----------------ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN------------- 344 (483)
T ss_pred -----------------HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC-------------
Confidence 4445554444322111 1125666666666663 443333433321
Q ss_pred CCCCcEEeCcCCCCCCC-----cccCCCcccEEECCCCcc-ccc-------CCCCCCCCcEeeccCcee-eeccchhhhc
Q 037786 449 KDSLSYLNLSHNFITKM-----KQISWKNLGYLDLRSNLL-QGP-------LLVPPSSLRVILILNNQF-TGEIIHSICD 514 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~-----~~~~~~~L~~L~ls~n~l-~~~-------~~~~~~~L~~L~l~~n~~-~~~~~~~l~~ 514 (565)
++.|+.+++..+....- +...|+.|+++.+|+|.+ ++. .......|+.+-+++++. ++...+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 26677777766643322 226788888888888864 332 111677888888888885 4455677788
Q ss_pred CCCCCEEeCCCCcCccc--CCCCCCCCCCCcccccCCCCcccc
Q 037786 515 IIALDVLDLSNNRLSGT--IPKCIGNFSPWCQTKWPSRWSATT 555 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~l~~~~~~~~~~ 555 (565)
+++|+.+++.+|.-... +-..-..++++++.....--.+++
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~ 467 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPG 467 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcc
Confidence 89999999999885532 222234788888877766544443
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=4.5e-10 Score=111.63 Aligned_cols=125 Identities=26% Similarity=0.246 Sum_probs=85.5
Q ss_pred CCCCCCeEEcCCCcccccCC--CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 389 PWKNLKYLKLQSNLLQGPLP--VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
.|-.|...+.++|++..... ..++.++.|+|++|++++. +.+.-+ +.|++|||++|.+..+|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l--------------~~LkhLDlsyN~L~~vp 225 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRL--------------PKLKHLDLSYNCLRHVP 225 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhc--------------ccccccccccchhcccc
Confidence 34456666666666653222 2367778888888887742 255555 88888888888888886
Q ss_pred c---cCCCcccEEECCCCcccccCCC-CCCCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCcc
Q 037786 467 Q---ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSG 530 (565)
Q Consensus 467 ~---~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~ 530 (565)
. .+|. |..|++++|.++..--. .+.+|+-||+++|-+.+-. ..-+..+.+|.+|.|.|||+-|
T Consensus 226 ~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 226 QLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 4 4554 88888888887653222 7788888888888875442 2346777888888888888753
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.6e-08 Score=69.69 Aligned_cols=61 Identities=31% Similarity=0.455 Sum_probs=48.0
Q ss_pred CCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccc
Q 037786 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
|+|++|++++|.+....+..|.++++|++|++++|.+....+.+|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888777777788888888888888888776677788888888888887764
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=8.2e-09 Score=92.08 Aligned_cols=204 Identities=19% Similarity=0.157 Sum_probs=108.7
Q ss_pred CCCEEEcccccCcccC-chhc-cCCCCCCeeeccCCccc--ccCCcCccCCCCCCEEEccCccccccCcCC-cCCCCCCE
Q 037786 108 HLRELHLSQCNFYGFL-PASL-GNVTQLAVLSLSFKSFS--GHIPPSLSNLHQLTDVDLGSNSFDGQFPDI-MNLTRISR 182 (565)
Q Consensus 108 ~L~~L~L~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 182 (565)
.++.+.+.++.+.... ...| ...+.++.+|+.+|.++ ..+...+.++|.|+.|+++.|.+......+ ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3444555555443221 1122 23566677777777665 233344556777777777777665444433 34556666
Q ss_pred EeccCCcccc-cCCCCCcCCCCCCEEEcccccccCC--Cchhhc-CCCCCCEEEccCCcccccCCCC----CCCCCcEEE
Q 037786 183 LDISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLSGT--IPSWLF-TLPLLRDIDLSDNQLTGHLDAF----PSKSLRKLY 254 (565)
Q Consensus 183 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l~-~~~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~ 254 (565)
|.+.|..+.- .....+..+|.++.|.++.|.+... ...... ..+.++++++..|......... .++++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 6666654331 2233445566667776666643211 011111 1234555555555443221111 345566666
Q ss_pred ccCCccccCCc-hhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcccc
Q 037786 255 LTNNRLHGSIP-SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 255 l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 311 (565)
+..|.+.+... ......+.+..|+++.+.+......+.+..++.|..|.++++++.+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66665543221 2333455666777777777666666677777777777777777654
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=1.5e-07 Score=98.88 Aligned_cols=107 Identities=31% Similarity=0.549 Sum_probs=80.9
Q ss_pred CCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccC
Q 037786 109 LRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISN 187 (565)
Q Consensus 109 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 187 (565)
++.|+|++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+. ++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67778888887777777788888888888888888777777788888888888888887765555 77788888888888
Q ss_pred CcccccCCCCCcCC-CCCCEEEccccccc
Q 037786 188 NQLTGSIPSHGSGL-QNLAVLRLYNNTLS 215 (565)
Q Consensus 188 ~~~~~~~~~~~~~~-~~L~~L~l~~~~l~ 215 (565)
|.+.+..|..+... .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 88877777666543 35667777777543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.7e-09 Score=92.31 Aligned_cols=177 Identities=19% Similarity=0.135 Sum_probs=94.3
Q ss_pred CCcEEEcCCCcCCCCCc-hhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCC--CCCCCCcE
Q 037786 11 KLQLLFLDYVDMSTVVP-GTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS--NWTSPLRC 87 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~ 87 (565)
.|+.+|+|...++.-.. .-+++| .+|+.|.+.+.++.+.+...+++..+|+.|+++.+..+....... ..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C-~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQC-SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHH-HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46667777665553222 223444 667777777776666666666667777777777664433322111 12266677
Q ss_pred EEccCCccCccCC-ccccC-CCCCCEEEccccc--CcccCch-hccCCCCCCeeeccCCc-ccccCCcCccCCCCCCEEE
Q 037786 88 LDVSGTRFSGQLP-DSICN-LRHLRELHLSQCN--FYGFLPA-SLGNVTQLAVLSLSFKS-FSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 88 L~l~~~~~~~~~~-~~~~~-l~~L~~L~L~~~~--~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 161 (565)
|+++.|......- ..+.+ -++|+.|+++++. +...... -...+++|.+||+++|. ++.....+|..++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7777765442211 11111 1456666776654 1111111 22556777777777663 2222233455667777777
Q ss_pred ccCcccc--ccCcCCcCCCCCCEEeccCC
Q 037786 162 LGSNSFD--GQFPDIMNLTRISRLDISNN 188 (565)
Q Consensus 162 l~~~~~~--~~~~~~~~~~~L~~L~l~~~ 188 (565)
++.|... +..-.+...+.|.+|++.|+
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7766532 11112666777777777665
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=1.5e-08 Score=94.83 Aligned_cols=271 Identities=21% Similarity=0.158 Sum_probs=166.2
Q ss_pred CCCCEEEcccccccCC--CchhhcCCCCCCEEEccCCcccccCCCC----CCCCCcEEEccCC-ccccCCch-hhhcCCC
Q 037786 202 QNLAVLRLYNNTLSGT--IPSWLFTLPLLRDIDLSDNQLTGHLDAF----PSKSLRKLYLTNN-RLHGSIPS-SIFELAN 273 (565)
Q Consensus 202 ~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~ 273 (565)
..|+.|.++++.-... .......+++++.|.+.+|...+..... .++.++.+++..| .+++.... ....|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578888988864322 2334567999999999999754322211 7789999999986 45544333 3346899
Q ss_pred cCccccccccc-cCccChHhhhcCCCCCEEEccCCc-cccccCCcccCCCCCccEEEcCCCCC-CCCCchhhc---cccc
Q 037786 274 LTYLSLASNNF-SGIVEPYMLAKLVNLAALELSHNS-LSFGTTSKVNSSFPQIFILSLSACNI-SAFPSFLRS---LELA 347 (565)
Q Consensus 274 L~~L~l~~n~~-~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~~~l-~~l~~~~~~---~~L~ 347 (565)
|++++++.|.. .+........++..++++...+|. ...+........++.+.++++..|.. +...-+... ..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999999874 332222345677778888777763 22233333345666778888878753 322222222 2789
Q ss_pred eEeccCCcCcccCChhhhhhCCCCccEEEcCCCc-cCCccC----CCCCCCCeEEcCCCccccc-----CCCCCCCCcEE
Q 037786 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNF-ITEMKQ----IPWKNLKYLKLQSNLLQGP-----LPVPPPRLQFL 417 (565)
Q Consensus 348 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~----~~~~~L~~L~l~~n~~~~~-----~~~~~~~L~~L 417 (565)
.++.+++...+..+.+.....+++|+.+-++.|+ +++... -.++.|+.+++..+..... ....++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 9999987443333333322367899999999985 554444 2678888888888755432 22347888888
Q ss_pred Eccccc-cCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc---cCCCcccEEECCCCc
Q 037786 418 LASNNQ-FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ---ISWKNLGYLDLRSNL 482 (565)
Q Consensus 418 ~l~~n~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~ls~n~ 482 (565)
.+++|. |++.....+.... =+...|..+.+++++...- .. ..+++|+.+++-++.
T Consensus 378 slshce~itD~gi~~l~~~~----------c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSS----------CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred Chhhhhhhhhhhhhhhhhcc----------ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 888884 4433222222110 0015666777776655543 11 555566666555554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7e-09 Score=92.55 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=52.4
Q ss_pred CCCCEEEccCccccccCc--CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccc-ccCC-CchhhcCCCCCCE
Q 037786 155 HQLTDVDLGSNSFDGQFP--DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT-LSGT-IPSWLFTLPLLRD 230 (565)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~-~~~~l~~~~~L~~ 230 (565)
..++.++++...++.... .+..|.+|+.|.+.|+++.+.+...++....|+.++++.+. ++.. ....+..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 356777777666542211 15567777777777777665555556666777777777664 2221 2234566777777
Q ss_pred EEccCCcccc
Q 037786 231 IDLSDNQLTG 240 (565)
Q Consensus 231 L~l~~~~~~~ 240 (565)
|++++|.+..
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 7777776553
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=2.6e-08 Score=87.77 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=88.4
Q ss_pred CcCCCCCCEEeccCCcccccCCC----CCcCCCCCCEEEcccccccCCCch-------------hhcCCCCCCEEEccCC
Q 037786 174 IMNLTRISRLDISNNQLTGSIPS----HGSGLQNLAVLRLYNNTLSGTIPS-------------WLFTLPLLRDIDLSDN 236 (565)
Q Consensus 174 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~-------------~l~~~~~L~~L~l~~~ 236 (565)
+..|+.|+.+++++|.+....|. .++.-..|.+|.+++|.+....-. ..+.-|.|+++....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34455555555555544422221 123344555555555544321111 1223466777777777
Q ss_pred cccccCCCC------CCCCCcEEEccCCccccCC-----chhhhcCCCcCccccccccccCccC---hHhhhcCCCCCEE
Q 037786 237 QLTGHLDAF------PSKSLRKLYLTNNRLHGSI-----PSSIFELANLTYLSLASNNFSGIVE---PYMLAKLVNLAAL 302 (565)
Q Consensus 237 ~~~~~~~~~------~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~~~~L~~L 302 (565)
++....... ....++++.+..|.|.... ...+.++++|+.|++..|.++.... ...+..++.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 665322111 2246777777777665331 2234567888888888887764322 2345666778888
Q ss_pred EccCCccccccCCccc-----CCCCCccEEEcCCCCCC
Q 037786 303 ELSHNSLSFGTTSKVN-----SSFPQIFILSLSACNIS 335 (565)
Q Consensus 303 ~l~~~~i~~~~~~~~~-----~~~~~L~~L~l~~~~l~ 335 (565)
.+.+|-++..+...++ ...|+|..|...||...
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8888877655554432 23456677777777543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=5.1e-08 Score=87.13 Aligned_cols=208 Identities=21% Similarity=0.157 Sum_probs=130.2
Q ss_pred cCCCCCCeeeccCCcccccCC-cCc-cCCCCCCEEEccCccccccCc---CCcCCCCCCEEeccCCcccccCCCCCcCCC
Q 037786 128 GNVTQLAVLSLSFKSFSGHIP-PSL-SNLHQLTDVDLGSNSFDGQFP---DIMNLTRISRLDISNNQLTGSIPSHGSGLQ 202 (565)
Q Consensus 128 ~~l~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 202 (565)
....-++.+.+.++.|..+-. ..| ..++.++.+++.+|.++.... .+.++|.|+.|+++.|++...+........
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 334456677777776652211 112 356889999999999875433 277899999999999998855544434667
Q ss_pred CCCEEEcccccccCC-CchhhcCCCCCCEEEccCCccccc-----CCCCCCCCCcEEEccCCccccC--CchhhhcCCCc
Q 037786 203 NLAVLRLYNNTLSGT-IPSWLFTLPLLRDIDLSDNQLTGH-----LDAFPSKSLRKLYLTNNRLHGS--IPSSIFELANL 274 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L 274 (565)
+|+.|-+.+..+.-. ....+..+|.+++|+++.|.+... ..+...+.++++....|..... ......-+|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 899999998877533 334567789999999999855421 1112334556666655543311 11111224666
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 335 (565)
..+.+..|++...-....+..++.+..|+++.+.|......+...+++++..|.+.++.+.
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 6666666666555444555566666666776666655444444466666666666666654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=2.2e-08 Score=99.95 Aligned_cols=126 Identities=25% Similarity=0.208 Sum_probs=57.8
Q ss_pred CcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEc
Q 037786 250 LRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL 329 (565)
Q Consensus 250 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l 329 (565)
|...++++|.++ .....++-++.++.|++++|++... +.+..++.|+.|||+.|.+..... +...-..|..|++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~--l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQ--LSMVGCKLQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccc--cchhhhhheeeee
Confidence 334444445444 3444455555555555555555432 245555555555555555432211 1111122555555
Q ss_pred CCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCcc
Q 037786 330 SACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFI 382 (565)
Q Consensus 330 ~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l 382 (565)
++|.++++.......+|+.||+++|-+. ......+...+..|+.|+|.+|++
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~-~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLS-EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhh-cchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555554444333335555555555544 222221111224455555555544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=4.4e-08 Score=86.40 Aligned_cols=88 Identities=23% Similarity=0.133 Sum_probs=44.0
Q ss_pred CCCCCCEEEcccccccCCC----chhhcCCCCCCEEEccCCcccccCC--------CCCCCCCcEEEccCCccccC----
Q 037786 200 GLQNLAVLRLYNNTLSGTI----PSWLFTLPLLRDIDLSDNQLTGHLD--------AFPSKSLRKLYLTNNRLHGS---- 263 (565)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~---- 263 (565)
.+++|+.||+++|.++... ...+...+.|+.|.+..|.+..... ....++|+.|...+|...+.
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 3455566666655554221 1223334455666666665542111 11345555565555544321
Q ss_pred --Cchhh-hcCCCcCccccccccccCc
Q 037786 264 --IPSSI-FELANLTYLSLASNNFSGI 287 (565)
Q Consensus 264 --~~~~~-~~~~~L~~L~l~~n~~~~~ 287 (565)
.+... ..+|-|..+.+.+|.+...
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcchhH
Confidence 11111 1367788888888888644
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=5e-06 Score=80.22 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=16.5
Q ss_pred CCCcEEeCcCCCCCCCcccCCCcccEEECCCC
Q 037786 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSN 481 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n 481 (565)
++|++|++++|.....|..-.++|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 45555666555544444333345555555554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.28 E-value=4.5e-06 Score=80.52 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=65.1
Q ss_pred ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCC-ccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccc
Q 037786 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN-FITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQ 423 (565)
Q Consensus 345 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~ 423 (565)
.++.|++++|.++ .+|. -+++|+.|.+++| .++.++....++|++|++++|... +..+++|+.|+++++.
T Consensus 53 ~l~~L~Is~c~L~-sLP~-----LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L---~sLP~sLe~L~L~~n~ 123 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV-----LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEI---SGLPESVRSLEIKGSA 123 (426)
T ss_pred CCCEEEeCCCCCc-ccCC-----CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccc---cccccccceEEeCCCC
Confidence 5667777776665 4551 2345666766664 344443333346666666666321 2234556666665544
Q ss_pred cCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCC-CCCC--cccCCCcccEEECCCCcccccCCCCCCCCcEeecc
Q 037786 424 FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF-ITKM--KQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILIL 500 (565)
Q Consensus 424 i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 500 (565)
... + ..+| ++|++|.+.++. .... |..-.++|+.|++++|.........+.+|+.|+++
T Consensus 124 ~~~-----L-----~~LP--------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls 185 (426)
T PRK15386 124 TDS-----I-----KNVP--------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLH 185 (426)
T ss_pred Ccc-----c-----ccCc--------chHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence 321 0 1122 456666654322 1111 11122466666666666443111245666666666
Q ss_pred Cc
Q 037786 501 NN 502 (565)
Q Consensus 501 ~n 502 (565)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 55
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=9.6e-06 Score=68.87 Aligned_cols=97 Identities=26% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCCCeEEcCCCccccc-CCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC----
Q 037786 391 KNLKYLKLQSNLLQGP-LPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM---- 465 (565)
Q Consensus 391 ~~L~~L~l~~n~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---- 465 (565)
.+...+|+++|.+... ....++.|.+|.+++|.|+...+.--... |+|+.|.+.+|.|..+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~--------------p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL--------------PNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc--------------cccceEEecCcchhhhhhcc
Confidence 3455556666655432 22335556666666666654444433333 5666666666655544
Q ss_pred cccCCCcccEEECCCCcccccCCC------CCCCCcEeeccC
Q 037786 466 KQISWKNLGYLDLRSNLLQGPLLV------PPSSLRVILILN 501 (565)
Q Consensus 466 ~~~~~~~L~~L~ls~n~l~~~~~~------~~~~L~~L~l~~ 501 (565)
|...||.|+.|.+=+|......-. .+++|+.||+++
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 225566666666666665432211 556666666655
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.03 E-value=5.8e-06 Score=70.14 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=68.5
Q ss_pred CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccc--
Q 037786 411 PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQG-- 485 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~-- 485 (565)
......+|+++|++.. ...+... +.|.+|.+.+|.|+.+ |. ..+|+|+.|.+.+|.|..
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l--------------~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHL--------------PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred ccccceecccccchhh--cccCCCc--------------cccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 4566678888887752 2233333 7888888888888888 55 667788888888887753
Q ss_pred cCCC--CCCCCcEeeccCceeeecc---chhhhcCCCCCEEeCCCCc
Q 037786 486 PLLV--PPSSLRVILILNNQFTGEI---IHSICDIIALDVLDLSNNR 527 (565)
Q Consensus 486 ~~~~--~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n~ 527 (565)
.+.. .++.|++|.+-+|+++..- ...+..+|+|+.||+++=.
T Consensus 105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 2222 7778888888888776542 2345677778887777644
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=5.9e-06 Score=52.69 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=30.2
Q ss_pred CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCc
Q 037786 492 SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 529 (565)
++|++|++++|.|++ ++..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 478999999999985 4556899999999999999987
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=2e-06 Score=68.11 Aligned_cols=78 Identities=24% Similarity=0.290 Sum_probs=34.3
Q ss_pred CCCcEEeCcCCCCCCCcc---cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeC
Q 037786 450 DSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDL 523 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 523 (565)
..|+..+|++|.+.++|. ..++.++.+++++|.+++ +|. ..+.|+.|+++.|++. ..|+.+..+.++-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 344444555555544432 334444444444444444 222 4444444444444443 23333444444444444
Q ss_pred CCCcCc
Q 037786 524 SNNRLS 529 (565)
Q Consensus 524 ~~n~~~ 529 (565)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 444443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.73 E-value=7.4e-05 Score=61.61 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=53.2
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT 82 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 82 (565)
+.+|.++++|+.+.+.. .+..+...+|..+ .+++.+.+.++ +......+|.+++.++.+.+..+ ...-....+...
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhcccc-ccccccccccc-ccccceeeeeccccccccccccc-cccccccccccc
Confidence 46778888888888774 4666666777776 67888888765 55556667777777887777542 111111222223
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCC
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQL 133 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 133 (565)
+.++.+++..+ +.......|.++ +|+.+.+.. .+......+|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555555433 222223344444 555555443 2233333444444443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1e-05 Score=85.03 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=92.5
Q ss_pred CCCCeEEcCCCccccc-----CCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC
Q 037786 391 KNLKYLKLQSNLLQGP-----LPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465 (565)
Q Consensus 391 ~~L~~L~l~~n~~~~~-----~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 465 (565)
.+|++||+++...... ....+|+|++|.+++-.+....+..+|.. .|+|..||||++.++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s-------------FpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCAS-------------FPNLRSLDISGTNISNL 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhc-------------cCccceeecCCCCccCc
Confidence 5677777777543321 12238888888888887776655555533 28888888888888888
Q ss_pred -cccCCCcccEEECCCCcccc--cCCC--CCCCCcEeeccCceeeec------cchhhhcCCCCCEEeCCCCcCcccCCC
Q 037786 466 -KQISWKNLGYLDLRSNLLQG--PLLV--PPSSLRVILILNNQFTGE------IIHSICDIIALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 466 -~~~~~~~L~~L~ls~n~l~~--~~~~--~~~~L~~L~l~~n~~~~~------~~~~l~~~~~L~~L~l~~n~~~~~~p~ 534 (565)
.-..+.+|+.|.+.+=.+.. .+-. .+++|+.||+|....... -.++-..+|.|+.||.|++.+.+.+=+
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 44777788877666655532 1111 788888888888664322 123445678888888888877754333
Q ss_pred C-CCCCCCCccccc
Q 037786 535 C-IGNFSPWCQTKW 547 (565)
Q Consensus 535 ~-l~~l~~L~~l~~ 547 (565)
. +...++|+.+..
T Consensus 269 ~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 269 ELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHhCccHhhhhh
Confidence 3 456666666553
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=1.9e-06 Score=68.16 Aligned_cols=82 Identities=23% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCC
Q 037786 450 DSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSN 525 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 525 (565)
+..+.|++++|+|+++|. ..++.|+.++++.|++....-. .+.++-.||..+|.... ++..+-.-+..-..++++
T Consensus 77 ~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 77 PTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGN 155 (177)
T ss_pred chhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcC
Confidence 344455555555555543 4445555555555554431100 34445555555555442 222222222233334455
Q ss_pred CcCcccC
Q 037786 526 NRLSGTI 532 (565)
Q Consensus 526 n~~~~~~ 532 (565)
++..+.-
T Consensus 156 epl~~~~ 162 (177)
T KOG4579|consen 156 EPLGDET 162 (177)
T ss_pred CcccccC
Confidence 5555443
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=4.7e-05 Score=48.56 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 121 (565)
+|++|++++|+++ .+|..+.++++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666 344456667777777777666653
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.59 E-value=0.0003 Score=57.90 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=61.3
Q ss_pred CccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCC
Q 037786 100 PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLT 178 (565)
Q Consensus 100 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~ 178 (565)
...|.++.+|+.+.+.. .+......+|.++++|+.+.+..+ +......+|.+++.++.+.+.. .+...... +..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34567777788887764 455566677777777888887764 5544555677777788888765 33323333 66677
Q ss_pred CCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCC
Q 037786 179 RISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLR 229 (565)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 229 (565)
+|+.+.+..+ +.......|..+ .++.+.+.. .+.......|..+++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 8888887654 444555667776 777777765 33334455666666653
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=0.00011 Score=77.39 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=46.8
Q ss_pred CCcCccccccccccCcc-ChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEe
Q 037786 272 ANLTYLSLASNNFSGIV-EPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLD 350 (565)
Q Consensus 272 ~~L~~L~l~~n~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~ 350 (565)
.+|+.|+++|....... +...-..+|+|+.|.+++-.+.......++.++|+|..||+++++++.+...-...+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 45666666664432211 11222345777777777666554444455566777777777777766553222222555555
Q ss_pred ccCCcCc
Q 037786 351 LSENNID 357 (565)
Q Consensus 351 l~~n~l~ 357 (565)
+.+=.+.
T Consensus 202 mrnLe~e 208 (699)
T KOG3665|consen 202 MRNLEFE 208 (699)
T ss_pred ccCCCCC
Confidence 5554444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=9e-05 Score=65.96 Aligned_cols=100 Identities=24% Similarity=0.331 Sum_probs=70.9
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhccccceEeccCC--cCcccCChhhhhhCCCCccEEEcCCCccCCccCC----CCCC
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN--NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI----PWKN 392 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~ 392 (565)
..+..++.+++.++.++++..+...++|++|.++.| .+...++.... .+|+|+.+++++|++..+... .+++
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAE--KAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhh--hCCceeEEeecCCccccccccchhhhhcc
Confidence 455677777888888887776666668999999999 55555544443 459999999999988865442 6678
Q ss_pred CCeEEcCCCcccccC------CCCCCCCcEEEcc
Q 037786 393 LKYLKLQSNLLQGPL------PVPPPRLQFLLAS 420 (565)
Q Consensus 393 L~~L~l~~n~~~~~~------~~~~~~L~~L~l~ 420 (565)
|+.|++.+|+.+... ...+|+|++||-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 889999888776521 1126777766543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.11 E-value=0.00017 Score=74.64 Aligned_cols=231 Identities=25% Similarity=0.147 Sum_probs=109.0
Q ss_pred CCCcCccccccccccCcc-ChHhhhcCCCCCEEEccCC-c-ccccc--CCcccCCCCCccEEEcCCCC-CCC--CCchhh
Q 037786 271 LANLTYLSLASNNFSGIV-EPYMLAKLVNLAALELSHN-S-LSFGT--TSKVNSSFPQIFILSLSACN-ISA--FPSFLR 342 (565)
Q Consensus 271 ~~~L~~L~l~~n~~~~~~-~~~~l~~~~~L~~L~l~~~-~-i~~~~--~~~~~~~~~~L~~L~l~~~~-l~~--l~~~~~ 342 (565)
++.|+.+.+.++.-.... .......++.|++|+++++ . +.... .......+++++.++++++. ++. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555555322221 1123445556666665542 1 11000 11122344555566666555 331 112222
Q ss_pred -ccccceEeccCCc-CcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCcccccCCCCCCCCc
Q 037786 343 -SLELAYLDLSENN-IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGPLPVPPPRLQ 415 (565)
Q Consensus 343 -~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 415 (565)
+++|+.|.+.+|. +++.....+.. .++.|+.|++++|....... ..+++++.+.+..... ++.++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------c~~l~ 338 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------CPSLT 338 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------CccHH
Confidence 2256666655554 44433333333 45666666666654431111 1345555544333221 34455
Q ss_pred EEEccccccCc---cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c---cCCCcccEEECCCCcccccCC
Q 037786 416 FLLASNNQFTG---EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q---ISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 416 ~L~l~~n~i~~---~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~---~~~~~L~~L~ls~n~l~~~~~ 488 (565)
.+.+.++.-.. ...-....+ ++++.+.+.++...+.. . .+|+.|+ ..+.....
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~--------------~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~----- 398 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSC--------------PKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC----- 398 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcC--------------CCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc-----
Confidence 55555543321 122223344 78888888877644432 1 5555552 22211111
Q ss_pred CCCCCCcEeeccCcee-eeccchhhhc-CCCCCEEeCCCCcCcc
Q 037786 489 VPPSSLRVILILNNQF-TGEIIHSICD-IIALDVLDLSNNRLSG 530 (565)
Q Consensus 489 ~~~~~L~~L~l~~n~~-~~~~~~~l~~-~~~L~~L~l~~n~~~~ 530 (565)
....++.|+++.+.. +......... +..++.+++++++...
T Consensus 399 -~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 399 -RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred -cCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 122278888888774 4333344433 7778888888888663
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=0.00012 Score=75.84 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=17.8
Q ss_pred CCCCCEEEcccccccCC--CchhhcCCCCCCEEEccC
Q 037786 201 LQNLAVLRLYNNTLSGT--IPSWLFTLPLLRDIDLSD 235 (565)
Q Consensus 201 ~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~ 235 (565)
++.|+.+.+.++.-... .......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566666655532212 223344566666666665
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=4.3e-05 Score=68.24 Aligned_cols=93 Identities=22% Similarity=0.113 Sum_probs=60.7
Q ss_pred CCCCCeEEcCCCcccccCCCC-CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-
Q 037786 390 WKNLKYLKLQSNLLQGPLPVP-PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ- 467 (565)
Q Consensus 390 ~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~- 467 (565)
+.+.++|++.+|.+.+...+. ++.|++|.|+-|+|+...+ +..| .+|++|.|..|.|.++..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rC--------------trLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRC--------------TRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHH--------------HHHHHHHHHhcccccHHHH
Confidence 345667777777776544433 7777777777777764333 3344 777777777777777732
Q ss_pred ---cCCCcccEEECCCCcccccCCC--------CCCCCcEee
Q 037786 468 ---ISWKNLGYLDLRSNLLQGPLLV--------PPSSLRVIL 498 (565)
Q Consensus 468 ---~~~~~L~~L~ls~n~l~~~~~~--------~~~~L~~L~ 498 (565)
..+|+|+.|-|..|.-.+...+ .+++|+.||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6677777777777776554433 556666655
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00069 Score=60.45 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=46.9
Q ss_pred CCccEEEcCCCccCCccCC-CCCCCCeEEcCCC--cccccCCC---CCCCCcEEEccccccCc-cchhhhhhcCCCCCCc
Q 037786 370 DTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSN--LLQGPLPV---PPPRLQFLLASNNQFTG-EIIQSICSSSTLEIPS 442 (565)
Q Consensus 370 ~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n--~~~~~~~~---~~~~L~~L~l~~n~i~~-~~~~~l~~~~~~~~~~ 442 (565)
..++.+.+.+..++++... .+++|++|.++.| ++....+. .+|+|+++++++|+|.. .....+..+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l------- 115 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL------- 115 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh-------
Confidence 4455555555555555543 5567777777777 44433322 25777777777777653 111223333
Q ss_pred cccccCCCCCcEEeCcCCCCCCC
Q 037786 443 WISEIGKDSLSYLNLSHNFITKM 465 (565)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~ 465 (565)
++|..|++.+|..+.+
T Consensus 116 -------~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 116 -------ENLKSLDLFNCSVTNL 131 (260)
T ss_pred -------cchhhhhcccCCcccc
Confidence 6677777777766666
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=8.6e-05 Score=66.35 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEc
Q 037786 225 LPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALEL 304 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 304 (565)
+.+.+.|++.+|.+.+...-...+.|+.|.++-|.|+.. ..+..|.+|++|.++.|.|.+.....-+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345666777777776554444566777777777777633 346677888888888888876544556777888888888
Q ss_pred cCCccccccCCc----ccCCCCCccEEE
Q 037786 305 SHNSLSFGTTSK----VNSSFPQIFILS 328 (565)
Q Consensus 305 ~~~~i~~~~~~~----~~~~~~~L~~L~ 328 (565)
..|+..+..... +...+|+|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 887765444332 234566777664
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0017 Score=34.26 Aligned_cols=19 Identities=47% Similarity=0.793 Sum_probs=9.8
Q ss_pred CCEEeCCCCcCcccCCCCCC
Q 037786 518 LDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 518 L~~L~l~~n~~~~~~p~~l~ 537 (565)
|++|||++|.++ .+|++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.93 E-value=4.9e-05 Score=76.45 Aligned_cols=81 Identities=21% Similarity=0.150 Sum_probs=47.2
Q ss_pred CCCcEEeCcCCCCCCC-cc------cCCCcccEEECCCCcccccCC--------CCCCCCcEeeccCceeeeccc----h
Q 037786 450 DSLSYLNLSHNFITKM-KQ------ISWKNLGYLDLRSNLLQGPLL--------VPPSSLRVILILNNQFTGEII----H 510 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~-~~------~~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~l~~n~~~~~~~----~ 510 (565)
+.+..+++..+.+... .. ...+.+++++++.|...+... ... .++.++++.|.++..-. .
T Consensus 376 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 454 (478)
T KOG4308|consen 376 SELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQR 454 (478)
T ss_pred cccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHH
Confidence 4455666666555443 11 556677777777776542111 144 77777777777754432 3
Q ss_pred hhhcCCCCCEEeCCCCcCccc
Q 037786 511 SICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 511 ~l~~~~~L~~L~l~~n~~~~~ 531 (565)
..+.-+.+...-+.+|.+...
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~ 475 (478)
T KOG4308|consen 455 ALALNPGILAIRLRGNVIGRA 475 (478)
T ss_pred HHhcCCCcceeecccCccccc
Confidence 345556666677777766543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.01 Score=31.27 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.3
Q ss_pred CCcEeeccCceeeeccchhhhc
Q 037786 493 SLRVILILNNQFTGEIIHSICD 514 (565)
Q Consensus 493 ~L~~L~l~~n~~~~~~~~~l~~ 514 (565)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4788888888888 55555654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.98 E-value=0.00039 Score=70.05 Aligned_cols=80 Identities=33% Similarity=0.264 Sum_probs=38.3
Q ss_pred CCCcEEeCcCCCCCCCcc-------cCCCc-ccEEECCCCcccccCCC-------CC-CCCcEeeccCceeeecc----c
Q 037786 450 DSLSYLNLSHNFITKMKQ-------ISWKN-LGYLDLRSNLLQGPLLV-------PP-SSLRVILILNNQFTGEI----I 509 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~-------~~~~~-L~~L~ls~n~l~~~~~~-------~~-~~L~~L~l~~n~~~~~~----~ 509 (565)
.++++|.+++|.++.... ...+. +.+++++.|++-+.... .+ ..++.++++.|.|++.- .
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 455555555555543210 22233 44455555555431110 12 45556666666655442 2
Q ss_pred hhhhcCCCCCEEeCCCCcCc
Q 037786 510 HSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 510 ~~l~~~~~L~~L~l~~n~~~ 529 (565)
+.+..+++++++.+++|++.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 33344556666666666655
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.27 E-value=0.028 Score=27.36 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=5.0
Q ss_pred CCcEEeCcCCCCCC
Q 037786 451 SLSYLNLSHNFITK 464 (565)
Q Consensus 451 ~L~~L~l~~n~l~~ 464 (565)
+|++|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.55 E-value=0.051 Score=26.42 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=6.1
Q ss_pred CccEEEcCCCccCCc
Q 037786 371 TLSFLDLSHNFITEM 385 (565)
Q Consensus 371 ~L~~L~ls~n~l~~~ 385 (565)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.0092 Score=51.27 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=26.7
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCC
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNL 72 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~ 72 (565)
.++.++-+++.|.....+.+.+++.++.|.+..|+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 3667777777777777777777777888777777433
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.54 E-value=0.06 Score=28.94 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=12.9
Q ss_pred CCCcEEEccccccCccchhhhh
Q 037786 412 PRLQFLLASNNQFTGEIIQSIC 433 (565)
Q Consensus 412 ~~L~~L~l~~n~i~~~~~~~l~ 433 (565)
++|++|++++|+|++.....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5677777777777666555544
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.29 E-value=0.054 Score=29.15 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=10.7
Q ss_pred CCCcEeeccCceeeeccchhh
Q 037786 492 SSLRVILILNNQFTGEIIHSI 512 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l 512 (565)
++|++|++++|.|++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666665544433
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.77 E-value=0.2 Score=27.47 Aligned_cols=20 Identities=50% Similarity=0.687 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCcCcccCCCC
Q 037786 515 IIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~~p~~ 535 (565)
+++|+.|+|++|.+. .+|++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888887 66655
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.77 E-value=0.2 Score=27.47 Aligned_cols=20 Identities=50% Similarity=0.687 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCcCcccCCCC
Q 037786 515 IIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~~p~~ 535 (565)
+++|+.|+|++|.+. .+|++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888887 66655
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.16 E-value=0.097 Score=45.20 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=48.1
Q ss_pred CCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC----CCCCCCcEEEccCC-ccccCCchhhhcCCCcCcc
Q 037786 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA----FPSKSLRKLYLTNN-RLHGSIPSSIFELANLTYL 277 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 277 (565)
.++.++-+++.+....-+.+..++.++.|.+.+|.-.+.... ...++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666666544455566666777777666654321110 14567777777766 5555555566667777777
Q ss_pred cccccc
Q 037786 278 SLASNN 283 (565)
Q Consensus 278 ~l~~n~ 283 (565)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.33 E-value=0.6 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCcCCCCCchhh
Q 037786 10 TKLQLLFLDYVDMSTVVPGTL 30 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~ 30 (565)
++|++|++++|.+..+....|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665554444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.33 E-value=0.6 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCcCCCCCchhh
Q 037786 10 TKLQLLFLDYVDMSTVVPGTL 30 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~ 30 (565)
++|++|++++|.+..+....|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665554444
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.94 E-value=0.9 Score=24.83 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=13.5
Q ss_pred CCCCEEeCCCCcCcccCCC
Q 037786 516 IALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 516 ~~L~~L~l~~n~~~~~~p~ 534 (565)
++|++|++++|.++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888877 6665
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.04 E-value=1.3 Score=24.87 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=14.0
Q ss_pred CCCcEEEccccccCccchhhhh
Q 037786 412 PRLQFLLASNNQFTGEIIQSIC 433 (565)
Q Consensus 412 ~~L~~L~l~~n~i~~~~~~~l~ 433 (565)
++|++|+|++|.+.......++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4567777777777655555444
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.93 E-value=0.024 Score=49.87 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc
Q 037786 106 LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166 (565)
Q Consensus 106 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (565)
++.+..|+++.+.+. ..|..+.....+..++...|... ..|.++...+++++++..++.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 333444444444433 33444444444444444444333 344444444444444444444
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.71 E-value=17 Score=36.27 Aligned_cols=55 Identities=27% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCcEEeCcCCCCCCCcc------cCCCcccEEECCCCcccc----cCCC---CCCCCcEeeccCceee
Q 037786 451 SLSYLNLSHNFITKMKQ------ISWKNLGYLDLRSNLLQG----PLLV---PPSSLRVILILNNQFT 505 (565)
Q Consensus 451 ~L~~L~l~~n~l~~~~~------~~~~~L~~L~ls~n~l~~----~~~~---~~~~L~~L~l~~n~~~ 505 (565)
-+.++.++.|.+..-+. ..-+.+..|++++|...+ .++. ....++.+..+.|..+
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 45567777777665521 445677777777776542 1111 4455555666666554
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.87 E-value=2.9 Score=22.98 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=9.0
Q ss_pred CCCcEEeCcCCCCCCC
Q 037786 450 DSLSYLNLSHNFITKM 465 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~ 465 (565)
.+|++|++++|+|..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4555666666655544
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.13 E-value=0.076 Score=46.82 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=64.9
Q ss_pred ccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCC
Q 037786 101 DSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRI 180 (565)
Q Consensus 101 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 180 (565)
..+.+....+.||++.+.+.. ....|..++.+..++++.+.+. ..|.++.....++.++...|.....+..++..+.+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 345566777888888877653 3345667778888888888776 67777877777777887777777666667778888
Q ss_pred CEEeccCCccc
Q 037786 181 SRLDISNNQLT 191 (565)
Q Consensus 181 ~~L~l~~~~~~ 191 (565)
+.++..++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88877777654
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.69 E-value=3.4 Score=22.51 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=8.5
Q ss_pred CCCcEEEcccc-ccCcc
Q 037786 412 PRLQFLLASNN-QFTGE 427 (565)
Q Consensus 412 ~~L~~L~l~~n-~i~~~ 427 (565)
++|++|++++| ++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 45566666665 34433
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.59 E-value=3.5 Score=41.64 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCCccEEEcCCCccCCccCC-----CCCCCCeEEcCCC
Q 037786 368 GKDTLSFLDLSHNFITEMKQI-----PWKNLKYLKLQSN 401 (565)
Q Consensus 368 ~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~l~~n 401 (565)
..+.+..+.+++|++..+... .+|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 446666677777766666552 4566666666666
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.17 E-value=3.5 Score=41.66 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=8.0
Q ss_pred CCCCcEEEccccccC
Q 037786 411 PPRLQFLLASNNQFT 425 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~ 425 (565)
.|.+..+.+++|++-
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 455555555555554
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.47 E-value=7.6 Score=47.41 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=18.8
Q ss_pred eccCceeeeccchhhhcCCCCCEEeCCCCcCccc
Q 037786 498 LILNNQFTGEIIHSICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 498 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 531 (565)
||++|+|+...+..|..+++|+.|+|++|++.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 3555555555555555555555555555555543
No 95
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=33.42 E-value=73 Score=28.27 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=4.1
Q ss_pred ccceEeccCC
Q 037786 345 ELAYLDLSEN 354 (565)
Q Consensus 345 ~L~~L~l~~n 354 (565)
.++.-|+++.
T Consensus 172 ~lerADl~gs 181 (302)
T KOG1665|consen 172 KLERADLEGS 181 (302)
T ss_pred hhcccccccc
Confidence 3444444443
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.43 E-value=54 Score=32.91 Aligned_cols=177 Identities=17% Similarity=-0.075 Sum_probs=90.6
Q ss_pred CCccEEEcCCCccCCccCCCCC-CCCeEEcCCCcccccCCCC------CCCCcEEEccccccCccchhhhhhcCCCCCCc
Q 037786 370 DTLSFLDLSHNFITEMKQIPWK-NLKYLKLQSNLLQGPLPVP------PPRLQFLLASNNQFTGEIIQSICSSSTLEIPS 442 (565)
Q Consensus 370 ~~L~~L~ls~n~l~~~~~~~~~-~L~~L~l~~n~~~~~~~~~------~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~ 442 (565)
+.+++++++.|.+.+-.+..++ ..--+.++.|..++..... -..+.+++++.|...++++..+..+...
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~---- 240 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT---- 240 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh----
Confidence 6678888888887776654221 1112666667665432221 3456788888888777777766554111
Q ss_pred cccccCCCCCcEEeCcCCCCCCC----cc--cCCCcccEEECCCCcccc----cCC-------CCCCCCcEeeccCceee
Q 037786 443 WISEIGKDSLSYLNLSHNFITKM----KQ--ISWKNLGYLDLRSNLLQG----PLL-------VPPSSLRVILILNNQFT 505 (565)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~----~~--~~~~~L~~L~ls~n~l~~----~~~-------~~~~~L~~L~l~~n~~~ 505 (565)
.-++.++.+...+.-- +. +.-..++..+++.|.-+. ... ..-.++ .|++..++..
T Consensus 241 -------~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~p 312 (553)
T KOG4242|consen 241 -------LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTP 312 (553)
T ss_pred -------hhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCc
Confidence 4555666665544422 11 333467777777776431 111 133455 6666666654
Q ss_pred eccchhh----hcCCCC--CEEeCCCCcCccc-CCCCCCCCCCCcccccCCCCcccccch
Q 037786 506 GEIIHSI----CDIIAL--DVLDLSNNRLSGT-IPKCIGNFSPWCQTKWPSRWSATTLFE 558 (565)
Q Consensus 506 ~~~~~~l----~~~~~L--~~L~l~~n~~~~~-~p~~l~~l~~L~~l~~~~~~~~~~~~~ 558 (565)
.+-+..+ +.-... -.+|+..|+.... .-+.-..=..+++++.+..++.....+
T Consensus 313 sE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 313 SEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred hhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 3322211 111111 2466666665532 111111222366666666655554443
No 97
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.58 E-value=42 Score=18.47 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=10.2
Q ss_pred HHhhCCCCCcEEEcCC
Q 037786 4 ALVQNVTKLQLLFLDY 19 (565)
Q Consensus 4 ~~~~~~~~L~~L~l~~ 19 (565)
.+|..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4566677777776543
No 98
>PRK09718 hypothetical protein; Validated
Probab=20.42 E-value=1.3e+02 Score=30.47 Aligned_cols=146 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC----CCCCcEEEcc
Q 037786 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP----PPRLQFLLAS 420 (565)
Q Consensus 345 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~L~~L~l~ 420 (565)
.+..+++.+|.+.+ ..++..++.++.+.+... .+..+..-++.++.+.+..... -.....-.+.
T Consensus 91 dfs~ldFegCdFsg-----------CdFS~csFs~~dLqDV~F-EcA~Lg~CNFsgAdLsgA~FarA~L~rvsFinCKLs 158 (512)
T PRK09718 91 DLSDLDLTSCHFKG-----------DVISKVSFLSSNLQHVTF-ECKEIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGE 158 (512)
T ss_pred eeccCEEcccEecC-----------CEEeeceecCCEEEeEEE-eccccCccccccCCCCCCccccceecceEEEecccc
Q ss_pred ccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCC--CCCCCcEee
Q 037786 421 NNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLV--PPSSLRVIL 498 (565)
Q Consensus 421 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~ 498 (565)
+..+++ ..|+...+.+|.+.......+ .|+...+.+|.+.+..+. .+..++...
T Consensus 159 GAdFSg-----------------------A~Lk~V~FsdCnL~yAnFsgA-nLskA~F~gCDLseAdFSEcdLS~aKka~ 214 (512)
T PRK09718 159 YVDFSK-----------------------NILDTVDFSQSQLTHSNFREC-QIRNSNFDNCYLYASHFTRAEFLSAKEIS 214 (512)
T ss_pred Cccccc-----------------------CccCCcEEeeeEecccCCCCC-cCCCCEEeCccCCcCCccCCccCCCCCCE
Q ss_pred ccCceeeeccchhhhcCCCCCEEeCCCCcCcc
Q 037786 499 ILNNQFTGEIIHSICDIIALDVLDLSNNRLSG 530 (565)
Q Consensus 499 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 530 (565)
+.++.++..... =+.|+.+|++.|.+.+
T Consensus 215 F~~cDLt~AdF~----qT~LkgVDFSdC~Le~ 242 (512)
T PRK09718 215 FIKSNLTAVMFD----HVRISTGNFKDCITEQ 242 (512)
T ss_pred EeCCCCCCCCcC----CCcCCCcccccccccc
No 99
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.21 E-value=1.6e+02 Score=18.40 Aligned_cols=7 Identities=43% Similarity=0.363 Sum_probs=2.7
Q ss_pred CCcEEeC
Q 037786 451 SLSYLNL 457 (565)
Q Consensus 451 ~L~~L~l 457 (565)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3333333
Done!