Query 037786
Match_columns 565
No_of_seqs 300 out of 3666
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 06:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-57 3.5E-62 494.0 40.4 522 5-535 95-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.3E-56 1.1E-60 482.2 42.6 506 5-533 121-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-50 5.5E-55 434.2 49.4 510 3-531 42-624 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-50 6.3E-55 433.7 43.5 521 10-548 25-617 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8E-50 2.7E-54 423.1 40.3 506 12-553 14-573 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-48 3.6E-53 414.5 35.5 507 12-549 13-554 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4.2E-48 1.4E-52 409.9 36.0 481 10-508 33-563 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-48 2.2E-52 421.6 32.5 486 13-531 7-562 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 9.7E-47 3.3E-51 399.5 35.2 488 37-553 13-534 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-45 4.4E-50 403.4 32.8 472 9-506 23-561 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 9.6E-45 3.3E-49 381.7 35.3 493 12-533 9-535 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 7E-44 2.4E-48 373.1 33.5 476 10-533 5-514 (549)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-43 1.9E-47 366.3 33.2 450 83-552 26-509 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 5.9E-42 2E-46 360.4 36.3 490 37-554 9-532 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-41 7.7E-46 351.4 28.0 439 62-549 3-477 (520)
16 4g8a_A TOLL-like receptor 4; l 100.0 5.9E-41 2E-45 357.7 30.2 499 13-554 34-594 (635)
17 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-41 1.5E-45 349.2 25.8 457 38-554 3-496 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 6.3E-39 2.1E-43 342.1 38.8 483 39-549 35-576 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 8.2E-41 2.8E-45 358.8 22.1 428 35-484 323-840 (876)
20 4eco_A Uncharacterized protein 100.0 3.2E-40 1.1E-44 349.0 25.6 415 35-485 81-601 (636)
21 4eco_A Uncharacterized protein 100.0 2.3E-39 7.8E-44 342.5 28.5 413 10-431 81-606 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 5.5E-39 1.9E-43 344.7 30.3 414 10-434 323-849 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-38 1.9E-42 328.5 30.1 445 58-531 30-512 (562)
24 1jl5_A Outer protein YOPM; leu 100.0 2.9E-38 9.8E-43 319.5 23.0 393 83-538 11-420 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-37 6.1E-42 324.7 28.0 442 83-552 31-509 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 1.1E-35 3.7E-40 300.6 27.7 417 35-543 11-443 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 2.6E-34 9E-39 293.3 31.5 358 134-533 13-412 (455)
28 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-34 5.8E-39 292.1 28.5 357 102-536 37-394 (457)
29 3v47_A TOLL-like receptor 5B a 100.0 4.8E-34 1.6E-38 291.3 29.0 374 13-408 13-412 (455)
30 1o6v_A Internalin A; bacterial 100.0 3E-33 1E-37 285.5 30.7 341 106-506 45-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 4.6E-33 1.6E-37 284.1 30.5 341 83-485 46-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-33 1.3E-37 282.2 27.2 362 50-512 33-394 (457)
33 3o6n_A APL1; leucine-rich repe 100.0 7.4E-31 2.5E-35 261.8 27.0 307 82-404 44-352 (390)
34 2id5_A Lingo-1, leucine rich r 100.0 6.8E-31 2.3E-35 269.4 25.5 317 12-335 13-333 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 8E-31 2.7E-35 268.9 25.8 317 37-359 13-335 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 5.4E-31 1.8E-35 262.7 23.6 303 202-531 45-354 (390)
37 4fmz_A Internalin; leucine ric 100.0 3.2E-30 1.1E-34 253.1 28.7 303 35-357 44-346 (347)
38 4fmz_A Internalin; leucine ric 100.0 4.9E-30 1.7E-34 251.8 29.3 306 55-404 40-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 6.6E-30 2.3E-34 268.7 27.0 307 82-404 50-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 7.8E-30 2.7E-34 268.1 23.7 301 203-531 52-360 (597)
41 1z7x_W Ribonuclease inhibitor; 100.0 7.7E-31 2.6E-35 268.1 3.2 376 83-507 3-442 (461)
42 1xku_A Decorin; proteoglycan, 100.0 3.4E-27 1.2E-31 229.6 27.0 289 11-333 32-330 (330)
43 1xku_A Decorin; proteoglycan, 100.0 4.6E-27 1.6E-31 228.6 26.7 247 84-339 32-280 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-27 8.9E-32 230.5 24.5 285 36-333 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-27 1.6E-31 228.7 24.7 245 84-338 34-280 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 8.7E-31 3E-35 267.8 -2.7 374 9-404 2-440 (461)
47 3ogk_B Coronatine-insensitive 100.0 7.7E-30 2.6E-34 269.3 3.6 339 105-481 162-548 (592)
48 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-27 4.3E-32 230.2 14.5 247 36-308 51-302 (313)
49 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-27 8.3E-32 228.2 15.5 248 10-284 50-303 (313)
50 3ogk_B Coronatine-insensitive 99.9 6.1E-29 2.1E-33 262.4 1.9 416 2-422 65-548 (592)
51 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-26 2.8E-30 235.1 24.1 265 227-537 41-305 (622)
52 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-25 1.2E-29 210.7 21.0 224 12-240 13-239 (285)
53 2p1m_B Transport inhibitor res 99.9 6.4E-28 2.2E-32 254.8 -0.7 394 83-529 105-544 (594)
54 2z80_A TOLL-like receptor 2, v 99.9 5.6E-25 1.9E-29 216.0 19.3 275 35-335 31-314 (353)
55 2z66_A Variable lymphocyte rec 99.9 1.3E-24 4.6E-29 208.9 21.6 244 13-262 10-262 (306)
56 4fcg_A Uncharacterized protein 99.9 6.3E-25 2.2E-29 212.5 17.4 216 297-553 81-314 (328)
57 3g06_A SSPH2 (leucine-rich rep 99.9 7.1E-24 2.4E-28 220.5 26.0 261 248-556 40-300 (622)
58 2z66_A Variable lymphocyte rec 99.9 3.3E-25 1.1E-29 213.2 14.8 230 10-241 28-263 (306)
59 2p1m_B Transport inhibitor res 99.9 6.3E-28 2.1E-32 254.8 -5.0 407 3-430 59-524 (594)
60 4fcg_A Uncharacterized protein 99.9 4E-24 1.4E-28 206.9 19.3 224 9-238 80-313 (328)
61 3o53_A Protein LRIM1, AGAP0063 99.9 6E-26 2.1E-30 219.1 6.3 248 253-548 15-270 (317)
62 3zyi_A Leucine-rich repeat-con 99.9 1.7E-23 5.8E-28 212.5 24.6 246 85-335 56-303 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 1.7E-23 6E-28 211.6 23.8 245 85-334 45-291 (440)
64 2z80_A TOLL-like receptor 2, v 99.9 3.4E-24 1.2E-28 210.4 17.8 279 58-361 30-318 (353)
65 3zyi_A Leucine-rich repeat-con 99.9 2.2E-23 7.5E-28 211.7 23.3 246 11-262 55-304 (452)
66 1ozn_A Reticulon 4 receptor; N 99.9 8.7E-24 3E-28 200.9 19.1 203 107-310 32-238 (285)
67 3zyj_A Leucine-rich repeat-con 99.9 2.6E-23 8.9E-28 210.4 23.5 246 11-262 44-293 (440)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-24 9.7E-29 207.3 11.5 236 35-283 34-273 (317)
69 3oja_A Leucine-rich immune mol 99.9 3E-24 1E-28 219.0 9.6 227 273-547 35-269 (487)
70 1wwl_A Monocyte differentiatio 99.9 5.5E-24 1.9E-28 204.8 5.8 201 82-286 94-310 (312)
71 1wwl_A Monocyte differentiatio 99.9 1.8E-24 6.3E-29 208.2 1.2 246 55-311 39-310 (312)
72 3oja_A Leucine-rich immune mol 99.9 2.6E-22 8.9E-27 204.7 16.4 233 36-281 35-271 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.5E-21 5.3E-26 184.4 19.1 222 14-241 11-239 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 5.1E-21 1.7E-25 180.9 21.0 202 59-262 28-238 (276)
75 2o6q_A Variable lymphocyte rec 99.9 1.5E-20 5.2E-25 176.8 23.7 200 12-239 18-218 (270)
76 1p9a_G Platelet glycoprotein I 99.9 1.2E-21 4.3E-26 185.7 16.4 195 319-531 7-210 (290)
77 1p9a_G Platelet glycoprotein I 99.9 9.3E-21 3.2E-25 179.7 21.5 202 6-215 6-208 (290)
78 2o6q_A Variable lymphocyte rec 99.9 2.7E-20 9.1E-25 175.1 23.2 181 83-263 37-220 (270)
79 3rfs_A Internalin B, repeat mo 99.9 1.6E-20 5.5E-25 176.7 18.1 216 14-243 23-239 (272)
80 3rfs_A Internalin B, repeat mo 99.8 8.9E-21 3E-25 178.5 15.0 224 37-271 21-245 (272)
81 1h6u_A Internalin H; cell adhe 99.8 7.3E-20 2.5E-24 175.4 16.1 207 274-506 21-231 (308)
82 1h6u_A Internalin H; cell adhe 99.8 1.7E-19 5.8E-24 172.8 17.2 195 30-240 37-231 (308)
83 2xwt_C Thyrotropin receptor; s 99.8 3E-19 1E-23 164.8 16.4 199 33-236 29-236 (239)
84 2ast_B S-phase kinase-associat 99.8 3.7E-21 1.3E-25 187.6 3.4 248 35-289 47-310 (336)
85 2ast_B S-phase kinase-associat 99.8 1.2E-20 4.1E-25 184.0 6.3 228 83-315 70-311 (336)
86 2xwt_C Thyrotropin receptor; s 99.8 4.7E-19 1.6E-23 163.4 16.0 197 83-307 31-236 (239)
87 3goz_A Leucine-rich repeat-con 99.8 3.4E-20 1.2E-24 182.3 8.5 152 88-239 3-180 (362)
88 2ca6_A RAN GTPase-activating p 99.8 4.5E-21 1.5E-25 190.6 2.1 253 27-280 25-338 (386)
89 3m19_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 160.0 20.1 156 84-239 36-192 (251)
90 4glp_A Monocyte differentiatio 99.8 1.4E-19 4.8E-24 173.9 11.6 222 83-311 64-308 (310)
91 4glp_A Monocyte differentiatio 99.8 2.3E-19 7.8E-24 172.4 13.1 223 36-262 65-308 (310)
92 3goz_A Leucine-rich repeat-con 99.8 1.9E-20 6.6E-25 184.0 4.8 224 111-334 2-265 (362)
93 3m19_A Variable lymphocyte rec 99.8 6E-18 2.1E-22 157.1 20.2 178 12-217 16-194 (251)
94 2ca6_A RAN GTPase-activating p 99.8 8.3E-21 2.9E-25 188.6 0.7 245 98-360 23-319 (386)
95 3cvr_A Invasion plasmid antige 99.8 2.6E-18 8.8E-23 176.5 15.4 187 297-517 59-255 (571)
96 2v9t_B SLIT homolog 2 protein 99.8 3.5E-18 1.2E-22 154.9 12.3 156 373-553 14-178 (220)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 4.4E-18 1.5E-22 154.3 12.6 145 373-531 14-168 (220)
98 2o6s_A Variable lymphocyte rec 99.7 2.2E-17 7.4E-22 148.7 16.1 178 13-201 10-188 (208)
99 4ay9_X Follicle-stimulating ho 99.7 8E-18 2.7E-22 164.4 14.2 236 13-256 12-254 (350)
100 3cvr_A Invasion plasmid antige 99.7 1.7E-17 5.9E-22 170.4 16.2 190 322-541 59-255 (571)
101 4ay9_X Follicle-stimulating ho 99.7 5.4E-17 1.8E-21 158.6 17.9 218 203-422 31-256 (350)
102 1h6t_A Internalin B; cell adhe 99.7 2.2E-17 7.4E-22 156.7 14.3 166 320-505 44-213 (291)
103 2o6s_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 146.5 15.3 178 86-271 10-188 (208)
104 1h6t_A Internalin B; cell adhe 99.7 7E-17 2.4E-21 153.1 14.9 186 16-217 30-215 (291)
105 1m9s_A Internalin B; cell inva 99.7 2.1E-16 7.2E-21 164.2 17.6 169 319-507 40-212 (605)
106 2v9t_B SLIT homolog 2 protein 99.7 3.4E-16 1.2E-20 141.8 16.4 151 86-239 14-165 (220)
107 1m9s_A Internalin B; cell inva 99.7 2.4E-16 8.1E-21 163.9 15.6 171 31-215 40-210 (605)
108 4ezg_A Putative uncharacterize 99.7 3.1E-16 1.1E-20 139.6 12.8 149 35-190 44-193 (197)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-15 3.6E-20 138.5 16.1 150 87-239 15-166 (220)
110 3e6j_A Variable lymphocyte rec 99.7 3.3E-15 1.1E-19 136.3 17.8 133 83-215 40-172 (229)
111 4ezg_A Putative uncharacterize 99.7 7.1E-16 2.4E-20 137.3 12.8 153 7-169 41-195 (197)
112 3e6j_A Variable lymphocyte rec 99.7 2.8E-15 9.6E-20 136.7 16.9 154 83-240 19-173 (229)
113 2xot_A Amphoterin-induced prot 99.7 8.5E-16 2.9E-20 150.7 14.2 174 38-215 21-202 (361)
114 1xeu_A Internalin C; cellular 99.6 7E-16 2.4E-20 143.8 12.6 165 324-508 21-188 (263)
115 2xot_A Amphoterin-induced prot 99.6 1.5E-15 5E-20 149.0 15.0 156 83-238 39-201 (361)
116 1xeu_A Internalin C; cellular 99.6 7E-15 2.4E-19 137.0 15.3 170 9-193 18-187 (263)
117 4fs7_A Uncharacterized protein 99.6 6.7E-14 2.3E-18 138.9 22.9 311 3-330 64-374 (394)
118 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.5E-20 133.3 10.4 119 373-505 11-139 (192)
119 2wfh_A SLIT homolog 2 protein 99.6 2.9E-15 9.8E-20 132.5 10.7 136 394-555 13-154 (193)
120 1dce_A Protein (RAB geranylger 99.6 1E-17 3.5E-22 173.1 -8.3 197 319-546 346-566 (567)
121 4fdw_A Leucine rich hypothetic 99.6 1.9E-13 6.6E-18 134.9 21.3 264 7-284 110-382 (401)
122 3sb4_A Hypothetical leucine ri 99.6 1.9E-14 6.5E-19 139.2 13.3 84 154-239 225-310 (329)
123 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4E-19 125.8 10.5 133 34-168 23-160 (168)
124 2ell_A Acidic leucine-rich nuc 99.5 1.4E-14 4.7E-19 125.4 8.5 129 84-214 25-159 (168)
125 1dce_A Protein (RAB geranylger 99.5 3.9E-17 1.3E-21 168.7 -9.3 103 109-215 443-546 (567)
126 1w8a_A SLIT protein; signaling 99.5 1.8E-13 6.2E-18 120.9 14.6 129 86-217 11-141 (192)
127 2je0_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 120.5 9.1 128 34-163 16-148 (149)
128 2o6r_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 121.3 12.4 125 394-532 10-140 (177)
129 2je0_A Acidic leucine-rich nuc 99.5 1.4E-14 4.7E-19 122.6 6.7 125 83-209 17-147 (149)
130 4fdw_A Leucine rich hypothetic 99.5 1.9E-12 6.5E-17 127.8 22.9 266 31-310 109-383 (401)
131 3sb4_A Hypothetical leucine ri 99.5 8E-14 2.7E-18 134.8 9.9 223 3-233 86-328 (329)
132 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.6E-19 154.0 4.6 122 98-222 215-336 (727)
133 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.9E-19 155.2 2.8 153 50-212 215-369 (727)
134 2wfh_A SLIT homolog 2 protein 99.4 1.5E-12 5.3E-17 114.8 14.6 126 86-215 13-139 (193)
135 2o6r_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 113.2 14.3 128 86-216 10-138 (177)
136 4fs7_A Uncharacterized protein 99.4 1.1E-11 3.7E-16 123.0 20.9 304 3-327 87-393 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.4 6.8E-13 2.3E-17 115.5 9.3 133 7-168 16-153 (176)
138 4gt6_A Cell surface protein; l 99.4 8.8E-11 3E-15 116.4 23.8 293 3-308 56-368 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.4 7.9E-13 2.7E-17 115.1 7.7 14 56-69 16-29 (176)
140 1ds9_A Outer arm dynein; leuci 99.3 1.9E-14 6.4E-19 128.2 -5.9 119 411-546 47-180 (198)
141 3un9_A NLR family member X1; l 99.3 6.2E-14 2.1E-18 137.0 -3.0 132 391-531 101-254 (372)
142 1ds9_A Outer arm dynein; leuci 99.3 3.5E-14 1.2E-18 126.4 -7.5 131 54-191 43-185 (198)
143 4gt6_A Cell surface protein; l 99.2 1.8E-09 6.1E-14 107.0 24.6 130 100-234 80-213 (394)
144 3un9_A NLR family member X1; l 99.2 5.7E-13 2E-17 130.2 -1.0 105 411-529 154-283 (372)
145 3g39_A Variable lymphocyte rec 99.2 7.6E-11 2.6E-15 101.6 11.9 101 86-189 12-113 (170)
146 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.6E-15 100.1 12.3 106 62-170 12-117 (170)
147 2r9u_A Variable lymphocyte rec 99.2 1.3E-10 4.6E-15 100.4 11.8 82 107-188 33-115 (174)
148 2r9u_A Variable lymphocyte rec 99.2 2.4E-10 8.1E-15 98.8 12.3 89 83-171 33-121 (174)
149 4h09_A Hypothetical leucine ri 99.1 1.4E-08 4.7E-13 100.1 22.8 287 35-337 46-347 (379)
150 4h09_A Hypothetical leucine ri 99.1 2.2E-08 7.5E-13 98.6 23.9 290 5-307 41-343 (379)
151 2ifg_A High affinity nerve gro 99.0 3.6E-10 1.2E-14 110.1 6.2 125 395-534 12-146 (347)
152 2ifg_A High affinity nerve gro 98.9 6.6E-09 2.2E-13 101.1 11.0 101 88-191 13-116 (347)
153 2ra8_A Uncharacterized protein 98.8 3.3E-09 1.1E-13 102.6 6.2 60 470-529 251-320 (362)
154 2ra8_A Uncharacterized protein 98.7 1E-08 3.4E-13 99.2 6.6 36 491-527 306-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 3.3E-08 1.1E-12 86.2 4.2 109 411-529 35-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 8.9E-08 3E-12 83.4 1.8 35 35-69 36-75 (185)
157 3rw6_A Nuclear RNA export fact 98.2 2.1E-07 7.1E-12 85.2 1.4 36 450-485 170-210 (267)
158 3e4g_A ATP synthase subunit S, 98.2 4.8E-07 1.6E-11 76.6 2.5 84 83-166 61-150 (176)
159 3e4g_A ATP synthase subunit S, 98.0 8.1E-07 2.8E-11 75.1 0.6 84 36-142 62-150 (176)
160 3rw6_A Nuclear RNA export fact 98.0 9.3E-06 3.2E-10 74.2 7.2 61 411-485 169-234 (267)
161 3rfe_A Platelet glycoprotein I 97.9 4.9E-06 1.7E-10 67.2 3.7 71 474-555 11-83 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 3E-05 1E-09 66.8 3.9 79 450-528 70-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00016 5.3E-09 62.4 2.6 35 35-69 41-80 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0097 3.3E-07 47.6 6.5 12 471-482 55-66 (130)
165 2lz0_A Uncharacterized protein 72.8 6.5 0.00022 29.2 5.3 49 19-69 5-53 (100)
166 2lz0_A Uncharacterized protein 64.5 15 0.00052 27.1 5.8 45 95-140 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-57 Score=494.03 Aligned_cols=522 Identities=27% Similarity=0.356 Sum_probs=279.6
Q ss_pred HhhCCCCCcEEEcCCCcCCCCCch--hhhhcCCCccEEEccCCcccccCCccc-cCCCCCCEEecCCCCCCCccCCC---
Q 037786 5 LVQNVTKLQLLFLDYVDMSTVVPG--TLKNLSSSLTSLSLSYCRIQGEFPENI-FRLSNLQMVRLKFNSNLSGVFPR--- 78 (565)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~--- 78 (565)
.|+++++|++|++++|.+.+..+. .++.+ ++|++|++++|.+++..+..+ .++++|++|++++| .+.+..+.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 172 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWV 172 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGC-TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHH
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCC-CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhh
Confidence 466777777777777777665555 66666 777777777777765555544 56677777777666 33332221
Q ss_pred -CCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCC
Q 037786 79 -SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQL 157 (565)
Q Consensus 79 -~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (565)
...+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..+..+++|
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 2222444444444444433222 23444444444444444433333 4444444444444444444444444444444
Q ss_pred CEEEccCccccccCcC-----------------------CcC-CCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccc
Q 037786 158 TDVDLGSNSFDGQFPD-----------------------IMN-LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT 213 (565)
Q Consensus 158 ~~L~l~~~~~~~~~~~-----------------------~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 213 (565)
++|++++|.+.+..+. +.. +++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 4444444444332222 222 2445555555555444444444445555555555554
Q ss_pred ccCCCch-hhcCCCCCCEEEccCCcccccCCCC--CCC-CCcEEEccCCccccCCchhhhc--CCCcCccccccccccCc
Q 037786 214 LSGTIPS-WLFTLPLLRDIDLSDNQLTGHLDAF--PSK-SLRKLYLTNNRLHGSIPSSIFE--LANLTYLSLASNNFSGI 287 (565)
Q Consensus 214 l~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~--~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~~~~~ 287 (565)
+.+..+. .+..+++|++|++++|.+.+..+.. ..+ +|+.|++++|.+++..+..+.. +++|++|++++|.+.+.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 4433332 2444555555555555444322222 112 4555555555555444444433 45556666666655543
Q ss_pred cChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCchhhcc-ccceEeccCCcCcccCChhhh
Q 037786 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSL-ELAYLDLSENNIDGQIPNWMW 365 (565)
Q Consensus 288 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~ 365 (565)
++ ..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+. .+|..+... +|+.|++++|++++.+|..+.
T Consensus 410 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 410 IP-PTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp CC-GGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cC-HHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 33 345666666666666666655444443 55666666666666665 444444333 666666666666666666554
Q ss_pred hhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccchhhhhhcCCCC
Q 037786 366 EVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEIIQSICSSSTLE 439 (565)
Q Consensus 366 ~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 439 (565)
.+++|+.|++++|+++...+. .+++|++|++++|++.+..|.. +++|++|++++|++++.+|..+.......
T Consensus 488 --~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 488 --NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp --GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred --cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 456666666666666644332 4566666666666666655543 56666677777766666666554321110
Q ss_pred CCcc----------------------------------c----------------------cccCCCCCcEEeCcCCCCC
Q 037786 440 IPSW----------------------------------I----------------------SEIGKDSLSYLNLSHNFIT 463 (565)
Q Consensus 440 ~~~~----------------------------------~----------------------~~~~~~~L~~L~l~~n~l~ 463 (565)
.... . ....++.|+.|++++|+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 0000 0 0001245566666666666
Q ss_pred CC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCC
Q 037786 464 KM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 464 ~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 535 (565)
+. |. +.+++|+.|++++|.+++.+|. .+++|++||+++|++++.+|..++.+++|++|++++|++.+.+|+.
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 55 43 5556666666666666665554 5566666666666666666666666666666666666666666544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-56 Score=482.17 Aligned_cols=506 Identities=30% Similarity=0.397 Sum_probs=400.1
Q ss_pred HhhCCCCCcEEEcCCCcCCCCCchhh-hhcCCCccEEEccCCcccccCCcc---c----------------------cCC
Q 037786 5 LVQNVTKLQLLFLDYVDMSTVVPGTL-KNLSSSLTSLSLSYCRIQGEFPEN---I----------------------FRL 58 (565)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~L~~L~l~~~~i~~~~~~~---~----------------------~~l 58 (565)
.++++++|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++..+.. + ..+
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l 199 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCC-TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTC
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccC-CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccC
Confidence 56777777777777776655444333 343 56666666666665444433 3 445
Q ss_pred CCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeec
Q 037786 59 SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSL 138 (565)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 138 (565)
++|++|++++| ...+..+.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.. .+++|++|++
T Consensus 200 ~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred CcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence 55555555555 34444444444466666666666665555556666666666666666655444432 5666666666
Q ss_pred cCCcccccCCcCccCC-CCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccCCCC-CcCCCCCCEEEccccccc
Q 037786 139 SFKSFSGHIPPSLSNL-HQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSH-GSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 139 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~ 215 (565)
++|.+.+.+|..+... ++|++|++++|.+.+..+. ++.+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 6676666777777664 9999999999998866554 899999999999999998777755 889999999999999998
Q ss_pred CCCchhhcCCC-CCCEEEccCCcccccCCCC----CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccCh
Q 037786 216 GTIPSWLFTLP-LLRDIDLSDNQLTGHLDAF----PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290 (565)
Q Consensus 216 ~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 290 (565)
+..+..+..++ +|+.|++++|.+.+..... ..++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p- 435 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP- 435 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC-
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc-
Confidence 78888888887 9999999999998654443 26789999999999998899999999999999999999986654
Q ss_pred HhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCchhhcc-ccceEeccCCcCcccCChhhhhhC
Q 037786 291 YMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVG 368 (565)
Q Consensus 291 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~ 368 (565)
..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++ .+|..+... +|++|++++|++++.+|.++. .
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~ 512 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--R 512 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--G
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh--c
Confidence 578999999999999999987766665 78899999999999998 667666555 999999999999999999887 5
Q ss_pred CCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCcccccCCCC-----------------------------------
Q 037786 369 KDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPLPVP----------------------------------- 410 (565)
Q Consensus 369 ~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~~~~----------------------------------- 410 (565)
+++|+.|++++|+++...+ ..+++|+.|++++|++.+.+|..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 7999999999999986555 27799999999999988655431
Q ss_pred --------------------------------------CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCC
Q 037786 411 --------------------------------------PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSL 452 (565)
Q Consensus 411 --------------------------------------~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L 452 (565)
+++|++||+++|++++.+|..+..+ +.|
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l--------------~~L 658 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM--------------PYL 658 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC--------------TTC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc--------------ccC
Confidence 3678999999999999999999999 999
Q ss_pred cEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 453 SYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 453 ~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
++|++++|.+++. |. +.+++|+.||+++|++++.+|. .+++|++||+++|++++.+|.. ..+.++....+.+|
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNN 737 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSC
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCC
Confidence 9999999999977 75 8899999999999999998887 7899999999999999999974 55666777788899
Q ss_pred cCcccCC
Q 037786 527 RLSGTIP 533 (565)
Q Consensus 527 ~~~~~~p 533 (565)
+..|-.|
T Consensus 738 ~~Lcg~~ 744 (768)
T 3rgz_A 738 PGLCGYP 744 (768)
T ss_dssp TEEESTT
T ss_pred chhcCCC
Confidence 9886544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-50 Score=434.20 Aligned_cols=510 Identities=20% Similarity=0.165 Sum_probs=334.5
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNW 81 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~ 81 (565)
+..|+++++|++|++++|.+.+..+.++..+ ++|++|++++|.++...+.+|+++++|++|++++| .+.+..+ .+..
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 119 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK 119 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccc
Confidence 3456677777777777777776666667666 67777777777776544445777777777777776 4444333 2334
Q ss_pred CCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhcc--CCCCCCeeeccCCcccccCCcCccCC-----
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG--NVTQLAVLSLSFKSFSGHIPPSLSNL----- 154 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l----- 154 (565)
+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhh
Confidence 47777777777777666666666777777777777776665555443 34677777777776665555555433
Q ss_pred ----------------------CCCCEEEccCccccccCcC-CcCCCC--CCEEeccCCcccccCCCCCcCCCCCCEEEc
Q 037786 155 ----------------------HQLTDVDLGSNSFDGQFPD-IMNLTR--ISRLDISNNQLTGSIPSHGSGLQNLAVLRL 209 (565)
Q Consensus 155 ----------------------~~L~~L~l~~~~~~~~~~~-~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 209 (565)
++|+.|++++|.+.+..+. +..++. |+.|++++|.+.+..+..+..+++|++|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 3455555555555444333 444433 777777777766666666666777777777
Q ss_pred ccccccCCCchhhcCCCCCCEEEccCCcccccC-----------CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccc
Q 037786 210 YNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL-----------DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLS 278 (565)
Q Consensus 210 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 278 (565)
++|.+.+..+..+..+++|+.|++++|...... .....++|++|++++|.+++..+..+..+++|++|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 777766556666667777777777665433110 112456677777777777766666667777777777
Q ss_pred cccccccC-ccChHhhhcC--CCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCc-hh-hccccceEecc
Q 037786 279 LASNNFSG-IVEPYMLAKL--VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPS-FL-RSLELAYLDLS 352 (565)
Q Consensus 279 l~~n~~~~-~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~-~~~~L~~L~l~ 352 (565)
+++|.+.. .++...+..+ ++|+.|++++|.++...+..+ ..+++|+.|++++|.+. .++. .+ ...+|++|+++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 77765321 1112222222 467777777777765544433 66777777777777775 3432 22 22377777787
Q ss_pred CCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCcccccCCC---CCCCCcEEEcccccc
Q 037786 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQF 424 (565)
Q Consensus 353 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~i 424 (565)
+|++.+..+..+. .+++|+.|++++|.++.+.. ..+++|+.|++++|++.+..+. .+++|++|++++|++
T Consensus 439 ~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 439 YNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp SCSEEECCTTTTT--TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcceeChhhhh--cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 7777654444443 46778888888777654322 2567788888888887765443 367888888888887
Q ss_pred Cccchhh--------hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc---cCCCcccEEECCCCcccccCCC---C
Q 037786 425 TGEIIQS--------ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLLV---P 490 (565)
Q Consensus 425 ~~~~~~~--------l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~ls~n~l~~~~~~---~ 490 (565)
++..... +..+ ++|++|++++|++..+|. ..+++|+.|++++|.+++..+. .
T Consensus 517 ~~~~~~~~~~~~~~~~~~l--------------~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGL--------------SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccchhhccCCcchhhcCC--------------CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 7543221 2333 888999999999888853 6778899999999988863332 6
Q ss_pred CCCCcEeeccCceeeeccchhhh-cCCCCCEEeCCCCcCccc
Q 037786 491 PSSLRVILILNNQFTGEIIHSIC-DIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 491 ~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~ 531 (565)
+++|+.|++++|.+++..+..+. .+++|+.|++++|++.|.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 78899999999999887777777 788999999999999877
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-50 Score=433.74 Aligned_cols=521 Identities=23% Similarity=0.249 Sum_probs=416.1
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCL 88 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L 88 (565)
+++++|++++|.+.++.+..|..+ ++|++|++++|.+++..+.++.++++|++|++++| .+....+. +..+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEE
Confidence 689999999999999988889998 99999999999999888899999999999999999 56655553 5566999999
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCcc--CCCCCCEEEccCcc
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLS--NLHQLTDVDLGSNS 166 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~ 166 (565)
++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999877778899999999999999999988888899999999999999999876666544 56899999999998
Q ss_pred ccccCcC-CcCC---------------------------CCCCEEeccCCcccccCCCCCcCCCC--CCEEEcccccccC
Q 037786 167 FDGQFPD-IMNL---------------------------TRISRLDISNNQLTGSIPSHGSGLQN--LAVLRLYNNTLSG 216 (565)
Q Consensus 167 ~~~~~~~-~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~~ 216 (565)
+.+..+. +..+ ++|+.|++++|.+.+..+..+..++. |++|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 8766554 3332 56778888888888777777877654 9999999998887
Q ss_pred CCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCcccc-----CCc----hhhhcCCCcCcccccccccc
Q 037786 217 TIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHG-----SIP----SSIFELANLTYLSLASNNFS 285 (565)
Q Consensus 217 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-----~~~----~~~~~~~~L~~L~l~~n~~~ 285 (565)
..+..+..+++|+.|++++|.+.+..+. ...++|+.|+++++...+ .++ ..+..+++|++|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 7777888899999999999988865543 267889999998765432 112 25677889999999999987
Q ss_pred CccChHhhhcCCCCCEEEccCCccccccCCc-ccC--CCCCccEEEcCCCCCCCCCc-hhhc-cccceEeccCCcCcccC
Q 037786 286 GIVEPYMLAKLVNLAALELSHNSLSFGTTSK-VNS--SFPQIFILSLSACNISAFPS-FLRS-LELAYLDLSENNIDGQI 360 (565)
Q Consensus 286 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~--~~~~L~~L~l~~~~l~~l~~-~~~~-~~L~~L~l~~n~l~~~~ 360 (565)
+. .+..+..+++|++|++++|.+....... .+. ..++|+.|++++|+++.++. .+.. .+|+.|++++|.+.+.+
T Consensus 343 ~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 64 4467888999999999998754322221 111 23579999999999886543 3333 38999999999998777
Q ss_pred ChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccc--cCCC---CCCCCcEEEccccccCccchhhh
Q 037786 361 PNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQG--PLPV---PPPRLQFLLASNNQFTGEIIQSI 432 (565)
Q Consensus 361 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~--~~~~---~~~~L~~L~l~~n~i~~~~~~~l 432 (565)
+...+. ++++|+.|++++|+++.+.+. .+++|+.|++++|.+.. ..|. .+++|++|++++|++++..+..+
T Consensus 422 ~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 422 TGQEWR-GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CSGGGT-TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred Cccccc-CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 754443 678999999999998887663 56899999999998763 3333 37899999999999998777777
Q ss_pred hhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-----------ccCCCcccEEECCCCcccccCC---CCCCCCcEee
Q 037786 433 CSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-----------QISWKNLGYLDLRSNLLQGPLL---VPPSSLRVIL 498 (565)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~ 498 (565)
..+ ++|++|++++|.++.++ ...+++|+.|++++|.++...+ ..+++|++|+
T Consensus 501 ~~l--------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 501 EGL--------------EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp TTC--------------TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccc--------------cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 777 99999999999998752 1567899999999999885322 3789999999
Q ss_pred ccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC-CCCCCcccccC
Q 037786 499 ILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG-NFSPWCQTKWP 548 (565)
Q Consensus 499 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~l~~~ 548 (565)
+++|.+++..+..|..+++|+.|++++|.+....|+.++ .+++|+.+++.
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence 999999987777889999999999999999865555454 56666555444
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8e-50 Score=423.12 Aligned_cols=506 Identities=19% Similarity=0.185 Sum_probs=395.7
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l 90 (565)
-++++.++..+..++. .+|+++++|++++|.+++..+.+|.++++|++|++++| .+....+ .+..+++|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~----~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPG----TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCSSCCT----TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCcccCcC----CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeC
Confidence 3467777777765542 34578899999999888777888889999999999988 5555444 4455688999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
++|.+++..|..|.++++|++|++++|.++...+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+...
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 99988877788888899999999999888877777888889999999999888864444555588999999999888766
Q ss_pred CcC-CcCCCCCC--EEeccCCcccccCCCCCcCCCCCCEEEccccccc--------------------------CCCchh
Q 037786 171 FPD-IMNLTRIS--RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS--------------------------GTIPSW 221 (565)
Q Consensus 171 ~~~-~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--------------------------~~~~~~ 221 (565)
.+. ++.+++|+ .+++++|.+.+..+..+.. .+|+.++++++... ...+..
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence 554 77888888 8888888888776665543 57888888776410 111122
Q ss_pred hcCCC--CCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCC
Q 037786 222 LFTLP--LLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297 (565)
Q Consensus 222 l~~~~--~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 297 (565)
+..+. +++.+++++|.+.+.... ...++|++|++++|.++ .+|..+..+++|++|++++|.+... .+..+..++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 325 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-CQISASNFP 325 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-chhhhhccC
Confidence 22222 688899999988876554 26688999999999988 6777888889999999999998754 345688899
Q ss_pred CCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCC---chhhc-cccceEeccCCcCcccCChhhhhhCCCCcc
Q 037786 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP---SFLRS-LELAYLDLSENNIDGQIPNWMWEVGKDTLS 373 (565)
Q Consensus 298 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~---~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 373 (565)
+|++|++++|.+....+...+..+++|+.|++++|.+..++ ..+.. .+|++|++++|.+.+..+..+. .+++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~ 403 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQLE 403 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTTCS
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc--CCccCC
Confidence 99999999998876666665678899999999999988653 23333 3899999999998866666655 568999
Q ss_pred EEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccch---hhhhhcCCCCCCcc
Q 037786 374 FLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEII---QSICSSSTLEIPSW 443 (565)
Q Consensus 374 ~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~---~~l~~~~~~~~~~~ 443 (565)
.|++++|.++...+ ..+++|++|++++|.+.+..+.. +++|++|++++|++++... ..+..+
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-------- 475 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-------- 475 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC--------
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC--------
Confidence 99999999887654 26788999999999988766543 8899999999999886322 456666
Q ss_pred ccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCC
Q 037786 444 ISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIA 517 (565)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 517 (565)
++|++|++++|.++++ |. ..+++|+.|++++|++++..+. .+++| .|++++|.+++..+..++.+++
T Consensus 476 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 476 ------GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp ------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred ------CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 8999999999999988 44 7788999999999999875554 77888 9999999999888888999999
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 518 LDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 518 L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
|+.|++++|++.|. |.+.|...|++
T Consensus 549 L~~L~l~~N~~~c~-----------c~~~~~~~w~~ 573 (606)
T 3t6q_A 549 QRTINLRQNPLDCT-----------CSNIYFLEWYK 573 (606)
T ss_dssp SSEEECTTCCEECS-----------GGGHHHHHHHH
T ss_pred CCEEeCCCCCcccc-----------CCcHHHHHHHH
Confidence 99999999999987 55555555554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-48 Score=414.54 Aligned_cols=507 Identities=21% Similarity=0.181 Sum_probs=332.5
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l 90 (565)
-++++.++++++.++. ..++++++|++++|.+++..+.+|.++++|++|++++| .+.+..+. +..+++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~----~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD----DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSSCCT----TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcccCCC----CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeEC
Confidence 3678999988887654 34588999999999999888888999999999999998 56665444 455699999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
++|.+++..|..|.++++|++|++++|.+....+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+..
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9999987778999999999999999999988777889999999999999999875 568889999999999999999887
Q ss_pred cCcC-CcCCCCC----CEEeccCCcccccCCCCCcCCCCCCEEEccccccc-CCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 170 QFPD-IMNLTRI----SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS-GTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 170 ~~~~-~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
..+. ++.+++| ..+++++|.+.+..+..+... +|+.|++++|.+. ...+..+..++.++.+.+..+.+.....
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 6654 6655554 489999999987666666554 8999999999875 3456677788888877765443321100
Q ss_pred ----------CCCCCCCcEEEc-cCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccc
Q 037786 244 ----------AFPSKSLRKLYL-TNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFG 312 (565)
Q Consensus 244 ----------~~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 312 (565)
....-.++.+++ ..+.+.+..+. +..+++|+.+++++|.+... + .+..+++|++|++++|.+. .
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~--~l~~~~~L~~L~l~~n~l~-~ 321 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E--DVPKHFKWQSLSIIRCQLK-Q 321 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C--CCCTTCCCSEEEEESCCCS-S
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h--hccccccCCEEEcccccCc-c
Confidence 001113444444 34444444443 55566666666666665432 2 4555566666666666652 2
Q ss_pred cCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc--CChhhhhhCCCCccEEEcCCCccCCccCC--
Q 037786 313 TTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ--IPNWMWEVGKDTLSFLDLSHNFITEMKQI-- 388 (565)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-- 388 (565)
.+ .+ .+++|+.|++++|....-..+....+|++|++++|.+++. .+..+. .+++|+.|++++|.++.++..
T Consensus 322 lp-~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~ 396 (606)
T 3vq2_A 322 FP-TL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL--GTNSLRHLDLSFNGAIIMSANFM 396 (606)
T ss_dssp CC-CC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH--CCSCCCEEECCSCSEEEECCCCT
T ss_pred cc-cC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc--cCCcccEeECCCCccccchhhcc
Confidence 22 22 5566666666666333111222223566666666665533 233333 456666666666666555532
Q ss_pred CCCCCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC
Q 037786 389 PWKNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK 464 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (565)
.+++|+.|++++|++.+..+. .+++|++|++++|++++..+..+..+ ++|++|++++|.+.+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL--------------TSLNTLKMAGNSFKD 462 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC--------------CCCCEEECCCCcCCC
Confidence 455666666666666554331 25666666666666665555555555 666666666666655
Q ss_pred -C-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC
Q 037786 465 -M-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 465 -~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~ 537 (565)
. |. ..+++|+.|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|++. .+|+++.
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~ 541 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ 541 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh
Confidence 2 32 4556666666666666554332 5566666666666666555666666666666666666665 5555555
Q ss_pred CCC-CCcccccCC
Q 037786 538 NFS-PWCQTKWPS 549 (565)
Q Consensus 538 ~l~-~L~~l~~~~ 549 (565)
.++ +|+.+++.+
T Consensus 542 ~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 542 HFPKSLAFFNLTN 554 (606)
T ss_dssp GSCTTCCEEECCS
T ss_pred hhcccCcEEEccC
Confidence 554 355555544
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.2e-48 Score=409.93 Aligned_cols=481 Identities=21% Similarity=0.197 Sum_probs=405.2
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCL 88 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L 88 (565)
+++++|++++|.+..+.+.+|.++ ++|++|++++|+++...|.+|.++++|++|++++| ...+..+ .+..+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEe
Confidence 368999999999999988899998 99999999999999888999999999999999999 5655544 44556999999
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCC--EEEccCcc
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLT--DVDLGSNS 166 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~ 166 (565)
++++|.+++..+..+.++++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+ .+++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999976678899999999999999999876656666699999999999999987788899999999 89999999
Q ss_pred ccccCcCCcCCCCCCEEeccCCccc--------------------------ccCCCCCcCCC--CCCEEEcccccccCCC
Q 037786 167 FDGQFPDIMNLTRISRLDISNNQLT--------------------------GSIPSHGSGLQ--NLAVLRLYNNTLSGTI 218 (565)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~~~~~--------------------------~~~~~~~~~~~--~L~~L~l~~~~l~~~~ 218 (565)
+.+..+.......|+.++++++... ...+..+..+. +++.+++++|.+....
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 9988877666678999998876411 00111122222 7899999999999877
Q ss_pred chhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCC
Q 037786 219 PSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297 (565)
Q Consensus 219 ~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 297 (565)
+..+..+++|+.|++++|.+...+... ..++|++|++++|.+++..+..+..+++|+.|++++|.+...++...+..++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 888999999999999999998665444 6689999999999999777888999999999999999988776667789999
Q ss_pred CCCEEEccCCccccccC-CcccCCCCCccEEEcCCCCCCCCC-chhhc-cccceEeccCCcCcccCChhhhhhCCCCccE
Q 037786 298 NLAALELSHNSLSFGTT-SKVNSSFPQIFILSLSACNISAFP-SFLRS-LELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374 (565)
Q Consensus 298 ~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 374 (565)
+|++|++++|.+..... ...+..+++|+.|++++|.+..++ ..+.. .+|+.|++++|.+.+..+...+. .+++|+.
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~ 429 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLHLLKV 429 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT-TCTTCCE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh-CcccCCE
Confidence 99999999999986542 223478899999999999998553 33333 39999999999998665554332 6799999
Q ss_pred EEcCCCccCCccCC---CCCCCCeEEcCCCcccccC------CCCCCCCcEEEccccccCccchhhhhhcCCCCCCcccc
Q 037786 375 LDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPL------PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445 (565)
Q Consensus 375 L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~ 445 (565)
|++++|.++...+. .+++|++|++++|++.+.. ...+++|++|++++|++++..+..+..+
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---------- 499 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL---------- 499 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC----------
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc----------
Confidence 99999999887763 6789999999999998632 1238999999999999998888888888
Q ss_pred ccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeecc
Q 037786 446 EIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEI 508 (565)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~ 508 (565)
++|++|++++|++++. |. ..++.| .|++++|.+++..+. .+++|++|++++|+++...
T Consensus 500 ----~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 500 ----KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ----TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ----cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9999999999999998 54 778889 999999999975554 6789999999999998643
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-48 Score=421.65 Aligned_cols=486 Identities=21% Similarity=0.252 Sum_probs=334.8
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCcc-CCCCCCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGV-FPRSNWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~ 91 (565)
+..+.++++++.++. +|+++++|++++|.++...+..|.++++|++|++++|...... ...+..+++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 356666666665542 4567777777777777666777777777777777776322222 2233444777777777
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchh--ccCCCCCCeeeccCCcccccCC-cCccCCCCCCEEEccCcccc
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS--LGNVTQLAVLSLSFKSFSGHIP-PSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 168 (565)
+|.+.+..|..|.++++|++|++++|.+.+..+.. |.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 77777666777777777777777777766544443 6777777777777777765433 45677777777777777766
Q ss_pred ccCcC-CcCC--CCCCEEeccCCcccccCCCCCcCCCC------CCEEEcccccccCCCchhh-----------------
Q 037786 169 GQFPD-IMNL--TRISRLDISNNQLTGSIPSHGSGLQN------LAVLRLYNNTLSGTIPSWL----------------- 222 (565)
Q Consensus 169 ~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~l~~~~~~~l----------------- 222 (565)
...+. +..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+..+
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 54443 4444 66777777777766655555554444 7777777765543332222
Q ss_pred -------------------cC--CCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhhcCCCcCcccc
Q 037786 223 -------------------FT--LPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSL 279 (565)
Q Consensus 223 -------------------~~--~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 279 (565)
.. .++|+.|++++|.+.+..+.. ..++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 22 256777888877776544332 5677788888888777666667777778888888
Q ss_pred ccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc
Q 037786 280 ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ 359 (565)
Q Consensus 280 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~ 359 (565)
++|.+... .+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.++.++. ..+|+.+++++|+++ .
T Consensus 322 s~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 322 SYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ESCCCSCC-CSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC-C
T ss_pred CCCCCCcc-CHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc-c
Confidence 88877644 33456777788888888887765444433 667788888888887776554 336778888888777 4
Q ss_pred CChhhhhhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccC----CCCCCCCcEEEccccccCccch--
Q 037786 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPL----PVPPPRLQFLLASNNQFTGEII-- 429 (565)
Q Consensus 360 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~n~i~~~~~-- 429 (565)
+|.. ...++.+++++|.++.++. ..+++|+.|++++|++.+.. +..+++|++|++++|.++...+
T Consensus 396 l~~~-----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 396 LPKI-----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CCCC-----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred cccc-----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccc
Confidence 5442 3567888888888887765 26788889999988887533 2347888899999988873322
Q ss_pred ---hhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC-CCCCCcEeeccCc
Q 037786 430 ---QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNN 502 (565)
Q Consensus 430 ---~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n 502 (565)
..+..+ ++|++|++++|.++.+ |. ..+++|+.|++++|.+++..+. ..++|+.|++++|
T Consensus 471 ~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 471 LCWDVFEGL--------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN 536 (844)
T ss_dssp CCSSCSSCB--------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEE
T ss_pred cchhhhcCc--------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCC
Confidence 233333 8899999999999988 43 6788999999999999874444 4488999999999
Q ss_pred eeeeccchhhhcCCCCCEEeCCCCcCccc
Q 037786 503 QFTGEIIHSICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 503 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 531 (565)
.+++..|..| ++|+.|++++|++.|.
T Consensus 537 ~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 537 QLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred cCCCCChhHh---CCcCEEEecCCCcccc
Confidence 9988887654 5889999999999876
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.7e-47 Score=399.50 Aligned_cols=488 Identities=19% Similarity=0.159 Sum_probs=385.3
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
-++++.+++.++ .+|..+. +++++|++++| .+.+..+ .+..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 467888888887 5665554 78999999998 5555555 44555899999999998887778888899999999999
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc--cCcCCcCCCCCCEEeccCCccccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG--QFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
+|.++...|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+.. .+..++++++|++|++++|.+++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999888888889999999999999998887666788899999999999998874 344588899999999999988877
Q ss_pred CCCCCcCCCCCC----EEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCcccc----
Q 037786 194 IPSHGSGLQNLA----VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRLHG---- 262 (565)
Q Consensus 194 ~~~~~~~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~---- 262 (565)
.+..+..+++|+ .+++++|.+....+..+... +|+.|++++|.+.+.... ...+.++.+++....+.+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 777777666554 79999998875555555544 788999988877521111 145566666654333221
Q ss_pred --CCchhhhcCC--CcCcccc-ccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC
Q 037786 263 --SIPSSIFELA--NLTYLSL-ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF 337 (565)
Q Consensus 263 --~~~~~~~~~~--~L~~L~l-~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l 337 (565)
.....+..+. .++.+++ ..+.+.+..+ . +..+++|+.|+++++.+.... ....+++|+.|++++|.+..+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~l 322 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-K-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQF 322 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-S-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSC
T ss_pred cccChHHhhhhhhccHhheecccccccccccc-c-cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCccc
Confidence 1111121111 3455555 4455555543 2 788999999999999986543 347789999999999999999
Q ss_pred CchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc--C---CCCCCCCeEEcCCCcccccCC--CC
Q 037786 338 PSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK--Q---IPWKNLKYLKLQSNLLQGPLP--VP 410 (565)
Q Consensus 338 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~---~~~~~L~~L~l~~n~~~~~~~--~~ 410 (565)
|.+ ...+|+.|++++|...+..+. ..+++|+.|++++|.++... + ..+++|++|++++|.+.+... ..
T Consensus 323 p~~-~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 397 (606)
T 3vq2_A 323 PTL-DLPFLKSLTLTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397 (606)
T ss_dssp CCC-CCSSCCEEEEESCSSCEECCC----CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTT
T ss_pred ccC-CCCccceeeccCCcCccchhh----ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccC
Confidence 966 555999999999966544422 26799999999999998874 2 378999999999999886432 23
Q ss_pred CCCCcEEEccccccCccch-hhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCccccc
Q 037786 411 PPRLQFLLASNNQFTGEII-QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGP 486 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~-~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~ 486 (565)
+++|++|++++|++++..+ ..+..+ ++|++|++++|.+... |. ..+++|+.|++++|.+++.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSL--------------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTC--------------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCCCeeECCCCccCCccChhhhhcc--------------ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 8999999999999998776 567777 9999999999999988 54 7889999999999999873
Q ss_pred -CCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 487 -LLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 487 -~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
.+. .+++|++|++++|.+++..+..++.+++|++|++++|++.+..|+.++.+++|+.|++.+..+.
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 343 7899999999999999999999999999999999999999888999999999999999997765
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=403.40 Aligned_cols=472 Identities=23% Similarity=0.215 Sum_probs=364.8
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCccc-ccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCc
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQ-GEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLR 86 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~ 86 (565)
.+++++|++++|.+..+.+..|..+ ++|++|++++|... ...+.+|.++++|++|++++| .+....+ .+..+++|+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCC
T ss_pred CCCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccC
Confidence 3567777888777777777777777 77777777777433 233667777777777777777 4444433 444457777
Q ss_pred EEEccCCccCccCCcc--ccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCcCccCC--CCCCEEE
Q 037786 87 CLDVSGTRFSGQLPDS--ICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPPSLSNL--HQLTDVD 161 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~ 161 (565)
+|++++|.+++..+.. |.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 7777777777555444 7777777777777777765543 467777777777777777776666666665 6777777
Q ss_pred ccCccccccCcC-CcCCCC------CCEEeccCCcccccCCC------------------------------------CC
Q 037786 162 LGSNSFDGQFPD-IMNLTR------ISRLDISNNQLTGSIPS------------------------------------HG 198 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~------L~~L~l~~~~~~~~~~~------------------------------------~~ 198 (565)
+++|.+....+. ++.+++ |+.|++++|.+.+..+. .+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 777776544332 444433 77777777754432221 12
Q ss_pred cC--CCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCc
Q 037786 199 SG--LQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANL 274 (565)
Q Consensus 199 ~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 274 (565)
.. .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. ...++|++|++++|.+++..+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 22 26899999999999877788899999999999999999876543 267899999999999997778889999999
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCC
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n 354 (565)
+.|++++|.+... ++..+..+++|+.|++++|.++.. ..+++|+.+++++|+++.+|.. ...++.+++++|
T Consensus 341 ~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~~l~~~--~~~l~~L~ls~N 411 (844)
T 3j0a_A 341 AYIDLQKNHIAII-QDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLVTLPKI--NLTANLIHLSEN 411 (844)
T ss_dssp CEEECCSCCCCCC-CSSCSCSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCCCCCCC--CTTCCEEECCSC
T ss_pred CEEECCCCCCCcc-ChhhhcCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCccccccc--ccccceeecccC
Confidence 9999999999754 445788999999999999998743 3378999999999999988754 337999999999
Q ss_pred cCcccCChhhhhhCCCCccEEEcCCCccCCccCC----CCCCCCeEEcCCCcccccCC--------CCCCCCcEEEcccc
Q 037786 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI----PWKNLKYLKLQSNLLQGPLP--------VPPPRLQFLLASNN 422 (565)
Q Consensus 355 ~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~--------~~~~~L~~L~l~~n 422 (565)
.+++ ++.......+++|+.|++++|+++..+.. .+++|+.|++++|.+....+ ..+++|++|++++|
T Consensus 412 ~l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 412 RLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCS-STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred cccc-CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 9984 44433333689999999999999976552 56899999999999874322 23799999999999
Q ss_pred ccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCCCcccccCCCCCCCCcEeeccC
Q 037786 423 QFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN 501 (565)
Q Consensus 423 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~ 501 (565)
++++..+..+..+ ++|++|++++|+++.+|. ...++|+.|++++|.+++..+..+.+|+.|++++
T Consensus 491 ~l~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 491 YLNSLPPGVFSHL--------------TALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp HHTTCCTTSSSSC--------------CSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred cccccChhHccch--------------hhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 9998888888887 999999999999999954 3348999999999999998888888999999999
Q ss_pred ceeee
Q 037786 502 NQFTG 506 (565)
Q Consensus 502 n~~~~ 506 (565)
|++..
T Consensus 557 Np~~C 561 (844)
T 3j0a_A 557 NKFIC 561 (844)
T ss_dssp ECCCC
T ss_pred CCccc
Confidence 99864
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-45 Score=381.67 Aligned_cols=493 Identities=20% Similarity=0.192 Sum_probs=390.5
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l 90 (565)
.+.++.++.++..++. .+|+++++|++++|.+++..+.+|..+++|++|++++| .+.+..+. +..+++|++|++
T Consensus 9 ~~~~~c~~~~l~~ip~----~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCSSCCS----SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCccccCC----CccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeC
Confidence 4567888777776543 34578999999999999888889999999999999999 56655444 455699999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
++|.++...+..|.++++|++|++++|.++...+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+..
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 9999997778899999999999999999987776679999999999999999886 468899999999999999999987
Q ss_pred cCcC-CcCCCCC----CEEeccCCcccccCCCCCcCCCCCCEEEcccccccC-CCchhhcCCCCCCEEEccCCccccc--
Q 037786 170 QFPD-IMNLTRI----SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG-TIPSWLFTLPLLRDIDLSDNQLTGH-- 241 (565)
Q Consensus 170 ~~~~-~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~-- 241 (565)
..+. ++.+++| ..+++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+....+...
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 6654 7777777 899999999998877777665 89999999985432 2345666777777666543322210
Q ss_pred ---CCCC-----CCCCCcEEEccCC-ccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccc
Q 037786 242 ---LDAF-----PSKSLRKLYLTNN-RLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFG 312 (565)
Q Consensus 242 ---~~~~-----~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 312 (565)
.... ..-.++.+++.++ .+.+..+..+..+++|+.+++++|.+... + ..+..+ +|++|++++|.+...
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~-~~~~~~-~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV-K-DFSYNF-GWQHLELVNCKFGQF 319 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSC-C-BCCSCC-CCSEEEEESCBCSSC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhh-h-hhhccC-CccEEeeccCccccc
Confidence 1111 1124567777776 66667777888889999999999988743 3 345666 999999999988732
Q ss_pred cCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccC--ChhhhhhCCCCccEEEcCCCccCCccCC--
Q 037786 313 TTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI--PNWMWEVGKDTLSFLDLSHNFITEMKQI-- 388 (565)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~-- 388 (565)
.. ..+++|+.|++++|.+..........+|++|++++|.+++.. +..+. .+++|+.|++++|.++.++..
T Consensus 320 ~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~ 393 (570)
T 2z63_A 320 PT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTTSLKYLDLSFNGVITMSSNFL 393 (570)
T ss_dssp CB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH--TCSCCCEEECCSCSEEEEEEEEE
T ss_pred Cc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc--ccCccCEEECCCCcccccccccc
Confidence 22 467889999999998774443334448999999999888543 44444 678999999999998888763
Q ss_pred CCCCCCeEEcCCCcccccCC----CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC
Q 037786 389 PWKNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK 464 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (565)
.+++|++|++++|.+.+..+ ..+++|++|++++|++++..+..+..+ ++|++|++++|.+.+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQE 459 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC--------------CcCcEEECcCCcCcc
Confidence 77899999999999887654 237899999999999988888778777 899999999999873
Q ss_pred --Ccc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCC
Q 037786 465 --MKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533 (565)
Q Consensus 465 --~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 533 (565)
+|. ..+++|+.|++++|++++..+. .+++|++|++++|.+++..+..|..+++|++|++++|++.|..|
T Consensus 460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 354 7788999999999999876554 77899999999999998888888999999999999999998755
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-44 Score=373.11 Aligned_cols=476 Identities=20% Similarity=0.226 Sum_probs=348.4
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLD 89 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 89 (565)
+...+.+.+++.++.++.. ++++|++|++++|++++..+.+|.++++|++|++++|
T Consensus 5 ~~~~~c~~~~~~l~~ip~~----~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-------------------- 60 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSG----LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-------------------- 60 (549)
T ss_dssp CTTSEEECTTSCCSSCCSC----CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS--------------------
T ss_pred CCCceEECCCCcccccccc----CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC--------------------
Confidence 3444456666666654432 2356777777777766555666666666666666555
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCcc-c
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNS-F 167 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~ 167 (565)
.+++..|..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+ ..+..+.++++|++|++++|. +
T Consensus 61 ----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 61 ----RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp ----CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred ----CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc
Confidence 4454555667777777888887777777666667777888888888777764 245667778888888888776 3
Q ss_pred cccCc-CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC----
Q 037786 168 DGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL---- 242 (565)
Q Consensus 168 ~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~---- 242 (565)
....+ .+..+++|++|++++|.+.+..+..+..+++|++|+++.+.+.......+..+++|+.|++++|.+.+..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 216 (549)
T 2z81_A 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216 (549)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC
T ss_pred cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc
Confidence 44433 3777888888888888888777888888888888888888776333333456888888888888887532
Q ss_pred -CCCCCCCCcEEEccCCccccCCch----hhhcCCCcCccccccccccCccC-----hHhhhcCCCCCEEEccCCccccc
Q 037786 243 -DAFPSKSLRKLYLTNNRLHGSIPS----SIFELANLTYLSLASNNFSGIVE-----PYMLAKLVNLAALELSHNSLSFG 312 (565)
Q Consensus 243 -~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~ 312 (565)
.....+.++.|+++++.+++..+. .+..+++|+.+++++|.+.+... ...+..+++++.+++.++.+...
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh
Confidence 112457888999998887754333 33457889999999988764311 12346678899999998876532
Q ss_pred cC----CcccCCCCCccEEEcCCCCCCCCCchhh--ccccceEeccCCcCcccCChhh-hhhCCCCccEEEcCCCccCCc
Q 037786 313 TT----SKVNSSFPQIFILSLSACNISAFPSFLR--SLELAYLDLSENNIDGQIPNWM-WEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 313 ~~----~~~~~~~~~L~~L~l~~~~l~~l~~~~~--~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~ 385 (565)
.. ..+....++++.|++++|.+..+|..+. ..+|+.|++++|++++.+|... ....+++|+.|++++|+++.+
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred hhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence 11 1112335689999999999999987663 3499999999999986554321 112568999999999999887
Q ss_pred cC-----CCCCCCCeEEcCCCcccccCCC---CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeC
Q 037786 386 KQ-----IPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNL 457 (565)
Q Consensus 386 ~~-----~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l 457 (565)
+. ..+++|++|++++|++.. .|. .+++|++|++++|++++. +.. +| ++|++|++
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l-~~~--------~~--------~~L~~L~L 438 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVV-KTC--------IP--------QTLEVLDV 438 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCC-CTT--------SC--------TTCSEEEC
T ss_pred ccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccc-cch--------hc--------CCceEEEC
Confidence 63 378899999999999884 443 378999999999998742 111 11 68999999
Q ss_pred cCCCCCCCcccCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCC
Q 037786 458 SHNFITKMKQISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533 (565)
Q Consensus 458 ~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 533 (565)
++|++++.+ ..+++|++|++++|+++. +|. .+++|++|++++|++++..+..++.+++|++|++++|++.|..|
T Consensus 439 s~N~l~~~~-~~l~~L~~L~Ls~N~l~~-ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 439 SNNNLDSFS-LFLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCSCCC-CCCTTCCEEECCSSCCSS-CCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCChhhhc-ccCChhcEEECCCCccCc-CCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999885 468899999999999984 554 78999999999999998888889999999999999999987744
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-43 Score=366.31 Aligned_cols=450 Identities=19% Similarity=0.179 Sum_probs=371.0
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
++|++|++++|.+++..|..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 67888888888888777889999999999999999999888899999999999999999999777777999999999999
Q ss_pred cCcccccc--CcCCcCCCCCCEEeccCCc-ccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 163 GSNSFDGQ--FPDIMNLTRISRLDISNNQ-LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 163 ~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
++|.+... ...++.+++|+.|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 99999753 3458999999999999998 45444568999999999999999998888889999999999999999876
Q ss_pred ccCCCC--CCCCCcEEEccCCccccCC--c-hhhhcCCCcCccccccccccCccCh---HhhhcCCCCCEEEccCCcccc
Q 037786 240 GHLDAF--PSKSLRKLYLTNNRLHGSI--P-SSIFELANLTYLSLASNNFSGIVEP---YMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 240 ~~~~~~--~~~~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~ 311 (565)
...... ..++|++|++++|.+++.. + .....+++|+.+++++|.+.+.... ..+..+++|+.+++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 443322 4689999999999988532 1 1233578999999999988754322 234667899999999998765
Q ss_pred ccCC-----cccCCCCCccEEEcCCCCCCCCC------chhh-ccccceEeccCCcCcccCChhhhhhCCCCccEEEcCC
Q 037786 312 GTTS-----KVNSSFPQIFILSLSACNISAFP------SFLR-SLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSH 379 (565)
Q Consensus 312 ~~~~-----~~~~~~~~L~~L~l~~~~l~~l~------~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~ 379 (565)
.... .....+++++.+++.++.+.... .... ..+++.+++++|.+. .+|..++. .+++|+.|++++
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~-~l~~L~~L~Ls~ 343 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSE 343 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHH-HCTTCCEEECCS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHh-cCccccEEEccC
Confidence 3211 12356788999999998876432 1112 238999999999998 78887754 579999999999
Q ss_pred CccCCcc------CCCCCCCCeEEcCCCcccccC-----CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccC
Q 037786 380 NFITEMK------QIPWKNLKYLKLQSNLLQGPL-----PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 380 n~l~~~~------~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
|.++... ...+++|++|++++|++.+.. ...+++|++|++++|+++ ..|..+..+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~------------- 409 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP------------- 409 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC-------------
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc-------------
Confidence 9998753 236799999999999997542 345899999999999998 455555555
Q ss_pred CCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcC
Q 037786 449 KDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 528 (565)
++|++|++++|.+..+|....++|+.|++++|++++ .+..+++|++|++++|+++ .+|. ...+++|++|++++|++
T Consensus 410 -~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 410 -EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp -TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCC
T ss_pred -ccccEEECCCCCcccccchhcCCceEEECCCCChhh-hcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCcc
Confidence 899999999999998876556799999999999987 3468899999999999998 4555 47899999999999999
Q ss_pred cccCCCCCCCCCCCcccccCCCCc
Q 037786 529 SGTIPKCIGNFSPWCQTKWPSRWS 552 (565)
Q Consensus 529 ~~~~p~~l~~l~~L~~l~~~~~~~ 552 (565)
.+..|+.++.+++|+.|++.+...
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCcCHHHHhcCcccCEEEecCCCc
Confidence 987777899999999999987544
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-42 Score=360.39 Aligned_cols=490 Identities=18% Similarity=0.160 Sum_probs=358.1
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
.+.++.++..++ .+|..+. +++++|++++| .+....+ .+..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 345666666565 4554443 46888888887 4444433 34445788888888887776666777788888888888
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc--cCcCCcCCCCCCEEeccCCccccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG--QFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
+|.++...+.+|.++++|++|++++|.+....+..++.+++|++|++++|.+.. .+..++++++|++|++++|.+.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 887777777777888888888888887775554467778888888888887764 233477778888888888877766
Q ss_pred CCCCCcCCCCC----CEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCcc------
Q 037786 194 IPSHGSGLQNL----AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRL------ 260 (565)
Q Consensus 194 ~~~~~~~~~~L----~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~------ 260 (565)
.+..+..+++| +.+++++|.+....+..+... +|+.+++++|........ .....++...+....+
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 66666666666 777888877776555555554 677777777643211000 0223333332221111
Q ss_pred ccCCchhhhcCC--CcCccccccc-cccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC
Q 037786 261 HGSIPSSIFELA--NLTYLSLASN-NFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF 337 (565)
Q Consensus 261 ~~~~~~~~~~~~--~L~~L~l~~n-~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l 337 (565)
.......+..++ .++.++++++ .+.+. .+..+..+++|++|++++|.+.. .+ .....+ +|+.|++++|.+..+
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~-l~-~~~~~~-~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIER-VK-DFSYNF-GWQHLELVNCKFGQF 319 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESC-STTTTGGGTTCSEEEEESCEECS-CC-BCCSCC-CCSEEEEESCBCSSC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhh-chhhhcCcCcccEEEecCccchh-hh-hhhccC-CccEEeeccCccccc
Confidence 111112222222 3556667666 44433 34568889999999999999874 22 333555 999999999999988
Q ss_pred CchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCcccccCC--CC
Q 037786 338 PSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGPLP--VP 410 (565)
Q Consensus 338 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~--~~ 410 (565)
|.. ...+|+.|++++|.+....+. ..+++|+.|++++|.++.... ..+++|++|++++|.+.+..+ ..
T Consensus 320 ~~~-~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 394 (570)
T 2z63_A 320 PTL-KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394 (570)
T ss_dssp CBC-BCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET
T ss_pred Ccc-cccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc
Confidence 862 344999999999998866655 267999999999999988752 378999999999999876443 34
Q ss_pred CCCCcEEEccccccCccch-hhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCccc-c
Q 037786 411 PPRLQFLLASNNQFTGEII-QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQ-G 485 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~-~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~-~ 485 (565)
+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+... |. ..+++|+.|++++|.+. +
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSL--------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTC--------------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cCCCCEEEccCCccccccchhhhhcC--------------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 8999999999999987655 456666 9999999999999988 54 77899999999999997 3
Q ss_pred cCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccc
Q 037786 486 PLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSAT 554 (565)
Q Consensus 486 ~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~ 554 (565)
.+|. .+++|++|++++|.+++..|..|+.+++|++|++++|++.+..|+.++.+++|+.|++.+.....
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 4444 88999999999999999889999999999999999999997777789999999999999865543
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=351.42 Aligned_cols=439 Identities=18% Similarity=0.175 Sum_probs=232.7
Q ss_pred CEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC
Q 037786 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK 141 (565)
Q Consensus 62 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 141 (565)
++|++++| .+.. ++.... ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 3 ~~l~ls~n-~l~~-ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKN-GLIH-VPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTS-CCSS-CCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCC-Cccc-cccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46677776 4443 332222 67777777777777655667777777777777777777666777777777777777777
Q ss_pred cccccCCcCccCCCCCCEEEccCcccccc-C-cCCcCCCCCCEEeccCCcccccCCCCCcCCCCC--CEEEcccccc--c
Q 037786 142 SFSGHIPPSLSNLHQLTDVDLGSNSFDGQ-F-PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL--AVLRLYNNTL--S 215 (565)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l--~ 215 (565)
.++ .+|.. .+++|++|++++|.+... . ..++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 776 34444 667777777777777642 2 346777777777777776654 234555566 7777777766 4
Q ss_pred CCCchhhcCCC-CCCEEEccCCcccccCCCC---CCCCCcEEEccCCc-------cccCCchhhhcCCCcCccccccccc
Q 037786 216 GTIPSWLFTLP-LLRDIDLSDNQLTGHLDAF---PSKSLRKLYLTNNR-------LHGSIPSSIFELANLTYLSLASNNF 284 (565)
Q Consensus 216 ~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~n~~ 284 (565)
...+..+..+. +...+++++|.+.+..... ..++|+.+++++|. +.+.++ .+..+++|+.+++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 44444444433 2224455555554332221 34555555555554 222222 344555566666655555
Q ss_pred cCccChHhh--hcCCCCCEEEccCCccccccCCccc----CCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcc
Q 037786 285 SGIVEPYML--AKLVNLAALELSHNSLSFGTTSKVN----SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDG 358 (565)
Q Consensus 285 ~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~----~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~ 358 (565)
.+....... ...++|++|++++|.+++..+..++ ..++.|+.+++++|.+ .+|.
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~------------------- 292 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ------------------- 292 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT-------------------
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch-------------------
Confidence 432111111 1124555666665555543333321 3444455555555544 3331
Q ss_pred cCChhhhhh-CCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCc--cchhh
Q 037786 359 QIPNWMWEV-GKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTG--EIIQS 431 (565)
Q Consensus 359 ~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~--~~~~~ 431 (565)
.++... ...+++.|++++|.+..... ..+++|++|++++|++.+..|.. +++|++|++++|++++ ..+..
T Consensus 293 ---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 293 ---SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp ---HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred ---hhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 111110 11334555555554444442 34455555555555555433322 4555555555555554 23344
Q ss_pred hhhcCCCCCCccccccCCCCCcEEeCcCCCCCC-Ccc---cCCCcccEEECCCCcccccCCCCC-CCCcEeeccCceeee
Q 037786 432 ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK-MKQ---ISWKNLGYLDLRSNLLQGPLLVPP-SSLRVILILNNQFTG 506 (565)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~l~~n~~~~ 506 (565)
+..+ ++|++|++++|.+.+ +|. ..+++|+.|++++|.+++..+..+ ++|++|++++|.++
T Consensus 370 ~~~l--------------~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 370 TTQM--------------KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK- 434 (520)
T ss_dssp HTTC--------------TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-
T ss_pred HhhC--------------CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-
Confidence 4444 555555555555555 332 334555555555555554444322 45555555555555
Q ss_pred ccchhhhcCCCCCEEeCCCCcCcccCCCC-CCCCCCCcccccCC
Q 037786 507 EIIHSICDIIALDVLDLSNNRLSGTIPKC-IGNFSPWCQTKWPS 549 (565)
Q Consensus 507 ~~~~~l~~~~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~l~~~~ 549 (565)
.+|..+..+++|++|++++|++. .+|+. +..+++|+.|++.+
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence 34444445555555555555555 44444 55555555555544
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.9e-41 Score=357.73 Aligned_cols=499 Identities=20% Similarity=0.216 Sum_probs=348.3
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~ 91 (565)
++.+.++.+++.++. ++|+++++|+|++|+|+...+.+|.++++|++|+|++| .+....+. +..+++|++|+++
T Consensus 34 ~~~~c~~~~l~~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCSSCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCcCccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEcc
Confidence 356666666765542 46788999999999999777788999999999999998 56655554 4556999999999
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCcccccc
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
+|.++...+..|.++++|++|++++|.++...+.+|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+.+.
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999987667788999999999999999988777789999999999999998874 3567788899999999999988766
Q ss_pred CcC-CcCCCC----CCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC-CCchhhcCCCCCCEEEccCCcccc----
Q 037786 171 FPD-IMNLTR----ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG-TIPSWLFTLPLLRDIDLSDNQLTG---- 240 (565)
Q Consensus 171 ~~~-~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~---- 240 (565)
.+. +..+.+ ...++++.+.+....+..+. ...+..+++.++.... ..+..+..+..++...+..+....
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 554 443333 34678888888755444433 3456677777764331 122344455555544432221110
Q ss_pred ------------------------------cCC-CCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccC
Q 037786 241 ------------------------------HLD-AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVE 289 (565)
Q Consensus 241 ------------------------------~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 289 (565)
... ......++.+.+.++.+... ..+....+++.+++.+|.+....
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~- 344 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP- 344 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC-
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC-
Confidence 000 01223455555555544422 12334456666666666655331
Q ss_pred hHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC---Cchhh-ccccceEeccCCcCcccCChhhh
Q 037786 290 PYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF---PSFLR-SLELAYLDLSENNIDGQIPNWMW 365 (565)
Q Consensus 290 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l---~~~~~-~~~L~~L~l~~n~l~~~~~~~~~ 365 (565)
...++.|+.+++.++....... ...+++++.+++++|.+... +.... ..+++.+++..+.... .+..+.
T Consensus 345 ---~~~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~ 417 (635)
T 4g8a_A 345 ---TLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL 417 (635)
T ss_dssp ---CCBCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT
T ss_pred ---cccchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccc
Confidence 1345566666666665443221 13567788888888877522 22222 2278888888877663 333332
Q ss_pred hhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccC-ccchhhhhhcCC
Q 037786 366 EVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFT-GEIIQSICSSST 437 (565)
Q Consensus 366 ~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~-~~~~~~l~~~~~ 437 (565)
.++.|+.++++++....... ..+++++.+++++|.+....+.. ++.+++|++++|.+. +..+..+..+
T Consensus 418 --~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-- 493 (635)
T 4g8a_A 418 --GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-- 493 (635)
T ss_dssp --TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC--
T ss_pred --ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc--
Confidence 56788888888887666554 25678888999998887655543 788899999988754 3455566666
Q ss_pred CCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchh
Q 037786 438 LEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHS 511 (565)
Q Consensus 438 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~ 511 (565)
++|++|+|++|+++++ |. ..+++|++|++++|++++..+. .+++|++||+++|++++..+..
T Consensus 494 ------------~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 494 ------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp ------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred ------------cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 8999999999999988 44 6788999999999998874443 7789999999999999888888
Q ss_pred hhcC-CCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccc
Q 037786 512 ICDI-IALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSAT 554 (565)
Q Consensus 512 l~~~-~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~ 554 (565)
|+.+ ++|+.|+|++|++.|. |.+.|...|++.
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~-----------C~~~~~~~wl~~ 594 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACT-----------CEHQSFLQWIKD 594 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCS-----------GGGHHHHHHHHH
T ss_pred HHhhhCcCCEEEeeCCCCccc-----------CCcHHHHHHHHh
Confidence 8887 6899999999999988 888888888754
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=349.25 Aligned_cols=457 Identities=18% Similarity=0.149 Sum_probs=319.3
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEccc
Q 037786 38 TSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQ 116 (565)
Q Consensus 38 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 116 (565)
++++++++.++ .+|..+. ++|++|++++| .+.+..+ .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 68999999999 5776665 89999999999 5555543 455669999999999999988889999999999999999
Q ss_pred ccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCccccccCcCCcCCCCC--CEEeccCCcc--c
Q 037786 117 CNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRI--SRLDISNNQL--T 191 (565)
Q Consensus 117 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~ 191 (565)
|.++.. |.. .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.. ..+..+++| +.|++++|.+ .
T Consensus 79 N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred Cceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccc
Confidence 999854 443 89999999999999986 467899999999999999999875 346777888 9999999998 6
Q ss_pred ccCCCCCcCCC-CCCEEEcccccccCCC-chhhcCCCCCCEEEccCCc-------ccccCCC-CCCCCCcEEEccCCccc
Q 037786 192 GSIPSHGSGLQ-NLAVLRLYNNTLSGTI-PSWLFTLPLLRDIDLSDNQ-------LTGHLDA-FPSKSLRKLYLTNNRLH 261 (565)
Q Consensus 192 ~~~~~~~~~~~-~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~-------~~~~~~~-~~~~~L~~L~l~~~~~~ 261 (565)
+..+..+..+. +...+++++|.+.+.. ...+..+++|+.+++++|. +.+..+. ...++|+.|++.++.+.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 66777666654 2345677777765443 3466789999999999986 3332222 26688999999999887
Q ss_pred cCCchhhh---cCCCcCccccccccccCccChHhh----hcCCCCCEEEccCCccccccCCcccCC---CCCccEEEcCC
Q 037786 262 GSIPSSIF---ELANLTYLSLASNNFSGIVEPYML----AKLVNLAALELSHNSLSFGTTSKVNSS---FPQIFILSLSA 331 (565)
Q Consensus 262 ~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~l----~~~~~L~~L~l~~~~i~~~~~~~~~~~---~~~L~~L~l~~ 331 (565)
+.....+. ..++|+.|++++|.+.+.++...+ ..+++|+.+++++|.+ ..+...... ..+++.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 54322222 246999999999999866554322 7889999999999987 222111111 14688888888
Q ss_pred CCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCccccc
Q 037786 332 CNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGP 406 (565)
Q Consensus 332 ~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~ 406 (565)
|.+..++......+|++|++++|.+++..|..+. .+++|+.|++++|+++.++. ..+++|++|++++|++.+
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~- 388 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY- 388 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-
Confidence 8877554322333777777777777765665543 45667777777666665332 244555555555555544
Q ss_pred CCCCCCCCcEEEccccccCccchhh-hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCccc
Q 037786 407 LPVPPPRLQFLLASNNQFTGEIIQS-ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQ 484 (565)
Q Consensus 407 ~~~~~~~L~~L~l~~n~i~~~~~~~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~ 484 (565)
..+.. +..+ ++|++|++++|++++. |....++|+.|++++|+++
T Consensus 389 --------------------~l~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 389 --------------------DEKKGDCSWT--------------KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp --------------------CGGGCSCCCC--------------TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC
T ss_pred --------------------ccccchhccC--------------ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc
Confidence 22221 2222 4555555555555444 3222245555555555555
Q ss_pred ccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccC-CCCccc
Q 037786 485 GPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWP-SRWSAT 554 (565)
Q Consensus 485 ~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~-~~~~~~ 554 (565)
. +|. .+++|++|++++|.+++..+..+..+++|++|++++|++.|. |.+.|. ..|++.
T Consensus 435 ~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~-----------c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 435 S-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-----------CPRIDYLSRWLNK 496 (520)
T ss_dssp C-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC-----------HHHHHHHHHHHHH
T ss_pred c-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc-----------CCchHHHHHHHHh
Confidence 2 322 566777777777777643333478888888888888888876 666666 666643
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.3e-39 Score=342.09 Aligned_cols=483 Identities=20% Similarity=0.161 Sum_probs=369.0
Q ss_pred EEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccc
Q 037786 39 SLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQC 117 (565)
Q Consensus 39 ~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 117 (565)
+.+-++-.++ .+|..+. +++++|+|++| .+....+ .+..+++|++|++++|.++...+.+|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 4555555566 4565443 47999999999 6666554 4556699999999999999777888999999999999999
Q ss_pred cCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC--cCCcCCCCCCEEeccCCcccccCC
Q 037786 118 NFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIP 195 (565)
Q Consensus 118 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~ 195 (565)
.++...+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+.... ..+..+++|++|++++|++.+..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 999888889999999999999999999777778999999999999999987542 347889999999999999998777
Q ss_pred CCCcCCCC----CCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEcc------------
Q 037786 196 SHGSGLQN----LAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLT------------ 256 (565)
Q Consensus 196 ~~~~~~~~----L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~------------ 256 (565)
..+..+.+ ...++++.|.+....+..+ ....+..+++.++........ .....++...+.
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 76655444 3478889988875444433 334567788877754311100 011222222211
Q ss_pred ------------------CCccc---cCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCC
Q 037786 257 ------------------NNRLH---GSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTS 315 (565)
Q Consensus 257 ------------------~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 315 (565)
.+... ......+....+++.+.+.++.+... ..+.....++.|++.++.+.....
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---GGGGSCCCCSEEEEESCEESSCCC-
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc---cccccchhhhhhhcccccccCcCc-
Confidence 10000 01122334456677777777776543 235667788999999887764332
Q ss_pred cccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc--CChhhhhhCCCCccEEEcCCCccCCccCC--CCC
Q 037786 316 KVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ--IPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWK 391 (565)
Q Consensus 316 ~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~ 391 (565)
..+..++.+++.++.....+......+|+.+++++|.+... .+.... ...+++.++++.+........ .++
T Consensus 346 ---~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~l~ 420 (635)
T 4g8a_A 346 ---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSNFLGLE 420 (635)
T ss_dssp ---CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSCCTTCT
T ss_pred ---ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh--hhhhhhhhhccccccccccccccccc
Confidence 34577888899888877666555556899999999988643 333333 678999999999988776663 678
Q ss_pred CCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC-C-
Q 037786 392 NLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK-M- 465 (565)
Q Consensus 392 ~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~- 465 (565)
+|+.+++.++......+. .+++++.+++++|.+.+..+..+... +.|++|++++|.+.. .
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~--------------~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGGGEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccc--------------hhhhhhhhhhcccccccC
Confidence 999999999877654433 38899999999999998877777777 999999999998654 3
Q ss_pred cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCC-
Q 037786 466 KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNF- 539 (565)
Q Consensus 466 ~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l- 539 (565)
|. ..+++|+.|++++|++++..+. .+++|++|++++|++++..+..|+.+++|++|+|++|++....|+.+..+
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 566 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence 44 7789999999999999886554 78999999999999999889999999999999999999998888899988
Q ss_pred CCCcccccCC
Q 037786 540 SPWCQTKWPS 549 (565)
Q Consensus 540 ~~L~~l~~~~ 549 (565)
++|+.|++.+
T Consensus 567 ~~L~~L~L~~ 576 (635)
T 4g8a_A 567 SSLAFLNLTQ 576 (635)
T ss_dssp TTCCEEECTT
T ss_pred CcCCEEEeeC
Confidence 7899999877
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.2e-41 Score=358.79 Aligned_cols=428 Identities=19% Similarity=0.227 Sum_probs=239.5
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEec-CCCCCCCccCCCCCCCC--CC-----cEEEcc----------CCccC
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL-KFNSNLSGVFPRSNWTS--PL-----RCLDVS----------GTRFS 96 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L-~~~~~~~~~~~~~~~~~--~L-----~~L~l~----------~~~~~ 96 (565)
.+++.|+|+++.+.+.+|.+++++++|++|+| ++| .+.+..+...... .+ +.+... ...+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57888889888888888888888999999998 555 3322211000000 00 000000 00000
Q ss_pred cc-----------CCccccCCCCCCEEEccc--ccCcccCchhccCCCCCCeeeccCCcccc-----------------c
Q 037786 97 GQ-----------LPDSICNLRHLRELHLSQ--CNFYGFLPASLGNVTQLAVLSLSFKSFSG-----------------H 146 (565)
Q Consensus 97 ~~-----------~~~~~~~l~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~ 146 (565)
.. .+........++.+.+.. |.+++ .|..|.++++|+.|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 000001111222222221 33433 34445555555555555555443 2
Q ss_pred CCcCcc--CCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCc-ccc-cCCCC-------CcCCCCCCEEEcccccc
Q 037786 147 IPPSLS--NLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQ-LTG-SIPSH-------GSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 147 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~-~~~~~-------~~~~~~L~~L~l~~~~l 214 (565)
+|..++ ++++|+.|++++|.+.+..+. ++.+++|+.|++++|+ +++ .+|.. +..+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 555544 555555555555554433333 5555556666665555 444 33322 22334666666666666
Q ss_pred cCCCch--hhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCC-cCccccccccccCccChH
Q 037786 215 SGTIPS--WLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELAN-LTYLSLASNNFSGIVEPY 291 (565)
Q Consensus 215 ~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~ 291 (565)
. .+|. .+..+++|+.|++++|.+...+.....++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .++ .
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-N 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-S
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-h
Confidence 6 4454 56666666666666666663332225566677777777666 56666666776 777777777776 333 3
Q ss_pred hhhcCC--CCCEEEccCCccccccCCc---c-cCCCCCccEEEcCCCCCCCCCchhh--ccccceEeccCCcCcccCChh
Q 037786 292 MLAKLV--NLAALELSHNSLSFGTTSK---V-NSSFPQIFILSLSACNISAFPSFLR--SLELAYLDLSENNIDGQIPNW 363 (565)
Q Consensus 292 ~l~~~~--~L~~L~l~~~~i~~~~~~~---~-~~~~~~L~~L~l~~~~l~~l~~~~~--~~~L~~L~l~~n~l~~~~~~~ 363 (565)
.+...+ +|+.|++++|.+.+..+.- . ....++|+.|++++|.++.+|.... ..+|+.|++++|.++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 344433 3777888877776533211 1 1134578888888888888877654 238888888888888 67766
Q ss_pred hhhhC------CCCccEEEcCCCccCCccCC----CCCCCCeEEcCCCcccccCCCC---CCCCcEEEccc------ccc
Q 037786 364 MWEVG------KDTLSFLDLSHNFITEMKQI----PWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASN------NQF 424 (565)
Q Consensus 364 ~~~~~------~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~------n~i 424 (565)
.+... +++|+.|++++|+++.++.. .+++|+.|++++|++.+ +|.. +++|+.|++++ |++
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 55311 12788888888888877653 45677777777777665 3322 56666666654 555
Q ss_pred CccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCccc
Q 037786 425 TGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQ 484 (565)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~ 484 (565)
.+..|..+..+ ++|++|++++|.+..+|....++|+.|++++|++.
T Consensus 795 ~~~ip~~l~~L--------------~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 795 LRQWPTGITTC--------------PSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CCCCCTTGGGC--------------SSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTC
T ss_pred cccChHHHhcC--------------CCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCC
Confidence 55555555555 66666666666664445433345555555555443
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-40 Score=349.02 Aligned_cols=415 Identities=20% Similarity=0.233 Sum_probs=314.5
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCC-----Ccc---------------------------CC-----
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNL-----SGV---------------------------FP----- 77 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~-----~~~---------------------------~~----- 77 (565)
.+++.|+|+++.+.+.+|.+++++++|++|++++|... .+. .+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46778888888887777778888888888888777210 000 00
Q ss_pred -------------CC--CCCCCCcEEEcc--CCccCccCCccccCCCCCCEEEcccccCccc-----------------C
Q 037786 78 -------------RS--NWTSPLRCLDVS--GTRFSGQLPDSICNLRHLRELHLSQCNFYGF-----------------L 123 (565)
Q Consensus 78 -------------~~--~~~~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-----------------~ 123 (565)
.. .....++.+.+. +|.+++ +|..|+++++|++|++++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00 000222222332 457776 788888999999999999888874 7
Q ss_pred chhcc--CCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc-ccc--cCcCCcCC------CCCCEEeccCCcccc
Q 037786 124 PASLG--NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS-FDG--QFPDIMNL------TRISRLDISNNQLTG 192 (565)
Q Consensus 124 ~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~------~~L~~L~l~~~~~~~ 192 (565)
|..+. ++++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ .+..++.+ ++|+.|++++|.+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 78887 89999999999998888888888899999999999987 765 33335554 88999999999888
Q ss_pred cCCC--CCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCC-CcEEEccCCccccCCchhh
Q 037786 193 SIPS--HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKS-LRKLYLTNNRLHGSIPSSI 268 (565)
Q Consensus 193 ~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~~~ 268 (565)
.+|. .+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+...+..+ ..++ |++|++++|.++ .+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 6777 78888899999999998886666 7888888999999999888544433 5566 899999999888 677666
Q ss_pred hcCC--CcCccccccccccCccChHhhh-------cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCc
Q 037786 269 FELA--NLTYLSLASNNFSGIVEPYMLA-------KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS 339 (565)
Q Consensus 269 ~~~~--~L~~L~l~~n~~~~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~ 339 (565)
...+ +|+.|++++|.+.+..+ ..+. .+++|++|++++|.++ ..+..++..+++|+.|++++|.++.+|.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhcccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 6543 88999999998876543 3344 5678999999999887 3444444668889999999999887776
Q ss_pred hhhc-c--------ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEEcCCCcccccCC
Q 037786 340 FLRS-L--------ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 340 ~~~~-~--------~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~ 408 (565)
.... . +|+.|++++|+++ .+|..+....+++|+.|++++|+++.++.. .+++|+.|++++|+
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~------ 547 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR------ 547 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB------
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc------
Confidence 4332 1 7999999999999 788776523578899999999998886553 67788888888876
Q ss_pred CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccc
Q 037786 409 VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 409 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~ 485 (565)
++++|++.+..|..+..+ ++|++|++++|.+..+|....++|+.|++++|++..
T Consensus 548 ---------~ls~N~l~~~~p~~l~~l--------------~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 ---------DAQGNRTLREWPEGITLC--------------PSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp ---------CTTCCBCCCCCCTTGGGC--------------SSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTTCE
T ss_pred ---------ccccCcccccChHHHhcC--------------CCCCEEECCCCcCCccCHhHhCcCCEEECcCCCCcc
Confidence 467888888888888888 899999999999977776555788888888887653
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-39 Score=342.48 Aligned_cols=413 Identities=17% Similarity=0.204 Sum_probs=298.2
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCccccc---------------------------------CCccc-
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGE---------------------------------FPENI- 55 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~---------------------------------~~~~~- 55 (565)
.+++.|+++++.+.+..+.+++.+ ++|++|++++|.+... .+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L-~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGC-TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhcC-ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 478899999999998888899998 9999999999865200 00000
Q ss_pred ------------------cCCCCCCEEecCC-CCCCCccCCCCCCCCCCcEEEccCCccCcc-----------------C
Q 037786 56 ------------------FRLSNLQMVRLKF-NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-----------------L 99 (565)
Q Consensus 56 ------------------~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~ 99 (565)
.....++.+.+.. +..+.+....+..+++|++|++++|.+++. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0111222222221 113334222333447888888888887764 7
Q ss_pred Ccccc--CCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCc-ccc-cCCcCccCC------CCCCEEEccCccccc
Q 037786 100 PDSIC--NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKS-FSG-HIPPSLSNL------HQLTDVDLGSNSFDG 169 (565)
Q Consensus 100 ~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~ 169 (565)
|..+. ++++|++|++++|.+.+..|..|.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.+..
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 77777 88888888888888777778888888888888888887 776 677766655 788888888888875
Q ss_pred cCc--CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCC-CCEEEccCCcccccCCCCC
Q 037786 170 QFP--DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL-LRDIDLSDNQLTGHLDAFP 246 (565)
Q Consensus 170 ~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~ 246 (565)
++. .++.+++|+.|++++|.+.+.+| .+..+++|++|++++|.+. ..+..+..+++ |+.|++++|.+...+..+.
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 555 47788888888888888876777 7777888888888888877 56666777877 8888888888775444332
Q ss_pred ---CCCCcEEEccCCccccCCchhhh-------cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCc
Q 037786 247 ---SKSLRKLYLTNNRLHGSIPSSIF-------ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSK 316 (565)
Q Consensus 247 ---~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 316 (565)
.++|++|++++|.+++..|..+. .+++|+.|++++|.+. .++...+..+++|++|++++|.++ ..+..
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHH
Confidence 23688888888888877776666 6678888888888887 455566777888899999888887 33333
Q ss_pred ccCCC-------CCccEEEcCCCCCCCCCchhh--c-cccceEeccCCcCcccCChhhhhhCCCCccEEEcC------CC
Q 037786 317 VNSSF-------PQIFILSLSACNISAFPSFLR--S-LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLS------HN 380 (565)
Q Consensus 317 ~~~~~-------~~L~~L~l~~~~l~~l~~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls------~n 380 (565)
.+... ++|+.|++++|.++.+|..+. . .+|+.|++++|++++ +|..+. .+++|+.|+++ +|
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL--NSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--GCSSCCEEECCSCBCTTCC
T ss_pred HhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhh--cCCCCCEEECCCCcccccC
Confidence 32322 288899999998888887664 3 388899999998885 777766 46889999884 45
Q ss_pred ccCCccCC---CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCccchhh
Q 037786 381 FITEMKQI---PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQS 431 (565)
Q Consensus 381 ~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~ 431 (565)
++....+. .+++|++|++++|++. .+|. ..++|++|++++|++.......
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCCTTCCEEECCSCTTCEEECTT
T ss_pred cccccChHHHhcCCCCCEEECCCCcCC-ccCHhHhCcCCEEECcCCCCccccHHh
Confidence 55544442 5788999999999884 4444 4788999999999877544433
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-39 Score=344.69 Aligned_cols=414 Identities=16% Similarity=0.182 Sum_probs=303.8
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEc-cCCcccccCCccc---------------------------------
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSL-SYCRIQGEFPENI--------------------------------- 55 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l-~~~~i~~~~~~~~--------------------------------- 55 (565)
.+++.|+|+++.+.+..+.+++.+ ++|++|+| ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L-~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQL-TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGC-TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhcc-ccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578999999999998888999999 99999999 8887665422110
Q ss_pred ------------------cCCCCCCEEecCC--CCCCCccCCCCCCCCCCcEEEccCCccCc-----------------c
Q 037786 56 ------------------FRLSNLQMVRLKF--NSNLSGVFPRSNWTSPLRCLDVSGTRFSG-----------------Q 98 (565)
Q Consensus 56 ------------------~~l~~L~~L~L~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------------~ 98 (565)
.....++.+.+.. | .+.+....+..+++|++|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccC-cccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1111222222222 2 333333334455899999999999886 3
Q ss_pred CCcccc--CCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCc-ccc-cCCcCccC-------CCCCCEEEccCccc
Q 037786 99 LPDSIC--NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKS-FSG-HIPPSLSN-------LHQLTDVDLGSNSF 167 (565)
Q Consensus 99 ~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~ 167 (565)
+|..++ ++++|++|++++|.+.+..|..|.++++|+.|++++|. +++ .+|..+.. +++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 788877 99999999999999888888999999999999999997 776 56665544 45999999999999
Q ss_pred cccCc--CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCC-CCEEEccCCcccccCCC
Q 037786 168 DGQFP--DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL-LRDIDLSDNQLTGHLDA 244 (565)
Q Consensus 168 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 244 (565)
..++. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+...+..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 86666 5889999999999999988 667 7888999999999999988 67777888888 99999999998855443
Q ss_pred C---CCCCCcEEEccCCccccCCchh---hh--cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCc
Q 037786 245 F---PSKSLRKLYLTNNRLHGSIPSS---IF--ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSK 316 (565)
Q Consensus 245 ~---~~~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 316 (565)
+ ..++|+.|++++|.+.+..+.. +. .+++|+.|++++|.+. .++...+..+++|+.|++++|.+.. .+..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~ 715 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPEN 715 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChH
Confidence 3 2245999999999988654422 22 3458999999999998 5566677789999999999999883 3333
Q ss_pred ccCC-------CCCccEEEcCCCCCCCCCchhh--c-cccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCc-----
Q 037786 317 VNSS-------FPQIFILSLSACNISAFPSFLR--S-LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNF----- 381 (565)
Q Consensus 317 ~~~~-------~~~L~~L~l~~~~l~~l~~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~----- 381 (565)
.+.. +++|+.|++++|+++.+|..+. . .+|+.|++++|++++ +|..+. .+++|+.|++++|+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~--~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL--NSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--GCTTCCEEECCCCBCTTCC
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhh--cCCCCCEEECCCCCCcccc
Confidence 3232 2389999999999999988775 3 399999999999995 787766 57899999998754
Q ss_pred -cCCccCC---CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCccchhhhhh
Q 037786 382 -ITEMKQI---PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQSICS 434 (565)
Q Consensus 382 -l~~~~~~---~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~ 434 (565)
+....+. .+++|+.|++++|++ +.+|. ..++|+.|++++|++....+..++.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEEECGGGHH
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCccChHHccc
Confidence 3322221 345555555555555 23333 2445555555555554444444443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-38 Score=328.54 Aligned_cols=445 Identities=18% Similarity=0.136 Sum_probs=243.2
Q ss_pred CCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeee
Q 037786 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLS 137 (565)
Q Consensus 58 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 137 (565)
+...++++++++ .+.. +|... .+++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~-~L~~-ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNR-NLTH-VPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTS-CCCS-CCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCC-CCcc-CCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 444578888887 5554 33222 27888888888888876667888888888888888888887788888888888888
Q ss_pred ccCCcccccCCcCccCCCCCCEEEccCccccccC--cCCcCCCCCCEEeccCCcccccCCCCCcCCCCC--CEEEccccc
Q 037786 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL--AVLRLYNNT 213 (565)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 213 (565)
+++|.++ .+|.. .+++|++|++++|.+.... ..++.+++|++|++++|.+.+. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 8888887 44544 6888888888888887643 3478888888888888877642 34555555 888888887
Q ss_pred c--cCCCchhhcCCC-CCCEEEccCCcccccCCCC---CCCCCcEEEccCCccc----cCCchhhhcCCCcCcccccccc
Q 037786 214 L--SGTIPSWLFTLP-LLRDIDLSDNQLTGHLDAF---PSKSLRKLYLTNNRLH----GSIPSSIFELANLTYLSLASNN 283 (565)
Q Consensus 214 l--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~ 283 (565)
+ ....+..+..+. ..-.+++++|.+....... ..++|+.+++++|... ......+..+++++.+++.++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 7 555566555543 1124466666655433221 4456667777666311 0112334556666666666665
Q ss_pred ccCccChH--hhhcCCCCCEEEccCCccccccCCccc----CCCCCccEEEcCCCCCCCCCc-h----hhccccceEecc
Q 037786 284 FSGIVEPY--MLAKLVNLAALELSHNSLSFGTTSKVN----SSFPQIFILSLSACNISAFPS-F----LRSLELAYLDLS 352 (565)
Q Consensus 284 ~~~~~~~~--~l~~~~~L~~L~l~~~~i~~~~~~~~~----~~~~~L~~L~l~~~~l~~l~~-~----~~~~~L~~L~l~ 352 (565)
+.+..... .....++|++|++++|.+++..+..++ ..+..|+.+++..+.+ .+|. . ....+++.|+++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEcc
Confidence 54221110 011224667777777666544444331 2333344444444444 3331 1 111245555555
Q ss_pred CCcCcccCChhhhhhCCCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCcccccC-----CCCCCCCcEEEcccccc
Q 037786 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPL-----PVPPPRLQFLLASNNQF 424 (565)
Q Consensus 353 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~i 424 (565)
+|.+..... ...+++|+.|++++|.++...+ ..+++|++|++++|++.+.. ...+++|++|++++|++
T Consensus 340 ~n~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 340 DTPFIHMVC----PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SSCCCCCCC----CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred CCCcccccC----ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 555442110 0133455555555555554322 13445555555555544321 12245555555555555
Q ss_pred Cccchhh-hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccccCCC---CCCCCcEeec
Q 037786 425 TGEIIQS-ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILI 499 (565)
Q Consensus 425 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l 499 (565)
++..+.. +..+ ++|++|++++|.+++. |..-.++|+.|++++|.++. +|. .+++|++|++
T Consensus 416 ~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 416 NSHAYDRTCAWA--------------ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNV 480 (562)
T ss_dssp BSCCSSCCCCCC--------------TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEEC
T ss_pred CCccChhhhcCc--------------ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEEC
Confidence 4422221 2222 4555555555555443 22111355555555555442 222 4445555555
Q ss_pred cCceeeeccchhhhcCCCCCEEeCCCCcCccc
Q 037786 500 LNNQFTGEIIHSICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 500 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 531 (565)
++|.+++..+..+..+++|+.|++++|++.|.
T Consensus 481 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 55555432222245555555555555555443
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-38 Score=319.46 Aligned_cols=393 Identities=22% Similarity=0.257 Sum_probs=237.1
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCC-------------CCeeeccCCcccccCCc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQ-------------LAVLSLSFKSFSGHIPP 149 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~~ 149 (565)
+.|+++++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++++ +++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5666777777776 467777777777777777777777677777776665 4888888888774 343
Q ss_pred CccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCC
Q 037786 150 SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLR 229 (565)
Q Consensus 150 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 229 (565)
. .++|++|++++|.+.+.+. .+++|+.|++++|.+.+. +.. .++|++|++++|.+.+ .+ .+..+++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 2 3688899999888876432 247888999988887742 221 2688999999998875 45 488888999
Q ss_pred EEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcc
Q 037786 230 DIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309 (565)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i 309 (565)
+|++++|++.+.... ..+|++|++++|.+++ ++ .+..+++|+.|++++|.+.+. +. ..++|++|++++|.+
T Consensus 157 ~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~----~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD----LPLSLESIVAGNNIL 227 (454)
T ss_dssp EEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC----CCTTCCEEECCSSCC
T ss_pred EEECCCCcCcccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC----CcCcccEEECcCCcC
Confidence 999999888764322 3578888888888875 45 477888888888888887753 21 225788888888877
Q ss_pred ccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCC
Q 037786 310 SFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389 (565)
Q Consensus 310 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 389 (565)
... + . +..+++|+.|++++|+++.+|... .+|+.|++++|++++ +|.. +++|+.|++++|.++.++..
T Consensus 228 ~~l-p-~-~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~ls~N~l~~l~~~- 295 (454)
T 1jl5_A 228 EEL-P-E-LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTD-LPEL-----PQSLTFLDVSENIFSGLSEL- 295 (454)
T ss_dssp SSC-C-C-CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSEESCC-
T ss_pred Ccc-c-c-cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccc-cCcc-----cCcCCEEECcCCccCcccCc-
Confidence 632 2 3 367788888888888887776532 378888888888773 4432 36788888888887775533
Q ss_pred CCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccC
Q 037786 390 WKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS 469 (565)
Q Consensus 390 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 469 (565)
.++|++|++++|++.+ .+..+++|++|++++|++++ .+.. + ++|++|++++|.++.+|. .
T Consensus 296 ~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~--------------~~L~~L~L~~N~l~~lp~-~ 355 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---P--------------PRLERLIASFNHLAEVPE-L 355 (454)
T ss_dssp CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---C--------------TTCCEEECCSSCCSCCCC-C
T ss_pred CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---C--------------CcCCEEECCCCccccccc-h
Confidence 2678888888887775 23445678888888887774 2221 2 677888888888877765 5
Q ss_pred CCcccEEECCCCcccc--cCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcc--cCCCCCCC
Q 037786 470 WKNLGYLDLRSNLLQG--PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSG--TIPKCIGN 538 (565)
Q Consensus 470 ~~~L~~L~ls~n~l~~--~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~p~~l~~ 538 (565)
+++|+.|++++|++++ .+|. .+..| +.|.+.+.+|. .+++|++|++++|++.+ .+|.+++.
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~---~l~~L--~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPE---SVEDL--RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCT---TCCEE--ECCC-------------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChH---HHHhh--hhccccccccc---ccCcCCEEECCCCcCCccccchhhHhh
Confidence 6778888888887776 3333 33333 23444444443 24788888888888886 66655443
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-37 Score=324.68 Aligned_cols=442 Identities=17% Similarity=0.169 Sum_probs=328.1
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
...++++++++.++ .+|..+. ++|++|++++|.+....+.+|.++++|++|++++|.+++..|.+|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 44488999999988 4666553 78999999999998888888999999999999999998888888999999999999
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCccccc-CCCCCcCCCCCCEEEcccccccCCCchhhcCCCCC--CEEEccCCcc-
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGS-IPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL--RDIDLSDNQL- 238 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L--~~L~l~~~~~- 238 (565)
++|.+...+.. .+++|++|++++|.+.+. .|..+..+++|++|++++|.+... .+..++++ +.|++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 99998866555 789999999999998863 356788899999999999988753 34445555 9999999988
Q ss_pred -cccCCCC-CC--CCCcEEEccCCccccCCch-hhhcCCCcCcccccccc-----ccCccChHhhhcCCCCCEEEccCCc
Q 037786 239 -TGHLDAF-PS--KSLRKLYLTNNRLHGSIPS-SIFELANLTYLSLASNN-----FSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 239 -~~~~~~~-~~--~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-----~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
.+..+.. .. ...-.+++++|.+.+..+. .+..+++|+.+++++|. +.+. ...+..++.|+.+++.++.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~--~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF--LSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH--HHHHHSCSSCEEEEEEEEE
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH--HHHHhccCcceEEEecCCc
Confidence 4333222 11 0122556777776654433 34467889999998875 2211 2356778888889888877
Q ss_pred cccccCCcc--cCCCCCccEEEcCCCCCC-CCCchh-----hcc-ccceEeccCCcCcccCChh-hhh-hCCCCccEEEc
Q 037786 309 LSFGTTSKV--NSSFPQIFILSLSACNIS-AFPSFL-----RSL-ELAYLDLSENNIDGQIPNW-MWE-VGKDTLSFLDL 377 (565)
Q Consensus 309 i~~~~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~~-----~~~-~L~~L~l~~n~l~~~~~~~-~~~-~~~~~L~~L~l 377 (565)
+.+...... ....++|++|++++|.++ .+|..+ ... .|+.++++.+.+ .+|.. +.. ....+++.|++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 654322211 012348999999999887 666544 222 455555555555 34422 211 02367999999
Q ss_pred CCCccCCccC-CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCc--cchhhhhhcCCCCCCccccccCCCC
Q 037786 378 SHNFITEMKQ-IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTG--EIIQSICSSSTLEIPSWISEIGKDS 451 (565)
Q Consensus 378 s~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~--~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (565)
++|.+..... ..+++|++|++++|.+.+..|.. +++|++|++++|++++ ..+..+..+ ++
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l--------------~~ 404 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM--------------SS 404 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC--------------TT
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC--------------CC
Confidence 9998887776 57789999999999988766543 7889999999999886 334556666 89
Q ss_pred CcEEeCcCCCCCC-Ccc---cCCCcccEEECCCCcccccCCCCC-CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 452 LSYLNLSHNFITK-MKQ---ISWKNLGYLDLRSNLLQGPLLVPP-SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 452 L~~L~l~~n~l~~-~~~---~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
|++|++++|.+.. +|. ..+++|+.|++++|.+++..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence 9999999999988 553 567899999999999987777644 79999999999998 56666678999999999999
Q ss_pred cCcccCCCC-CCCCCCCcccccCCCCc
Q 037786 527 RLSGTIPKC-IGNFSPWCQTKWPSRWS 552 (565)
Q Consensus 527 ~~~~~~p~~-l~~l~~L~~l~~~~~~~ 552 (565)
++. .+|+. ++.+++|+.|++.+...
T Consensus 484 ~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 484 QLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 998 77877 88899999998877433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-35 Score=300.61 Aligned_cols=417 Identities=21% Similarity=0.260 Sum_probs=195.1
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCC-CCC-------------CcEEEccCCccCccCC
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNW-TSP-------------LRCLDVSGTRFSGQLP 100 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~-------------L~~L~l~~~~~~~~~~ 100 (565)
.+|++|.+++|.+ +.+|.+++++++|++|++++| ...+..+.... ..+ +++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 6788999999988 478888899999999888887 45544444333 243 3566666665552 23
Q ss_pred ccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCC
Q 037786 101 DSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRI 180 (565)
Q Consensus 101 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 180 (565)
.. .++|++|++++|.+++ .|.. .++|++|++++|.+.+ ++.. .++|++|++++|.+.+. +.++.+++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p~~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-PELQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-CCCTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-cccCCCCCC
Confidence 21 2455666666555554 2221 2455566665555542 1111 14555555555555542 245555555
Q ss_pred CEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCcc
Q 037786 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRL 260 (565)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 260 (565)
++|++++|++.+ +|.. .++|++|++++|.+.+ .+ .+..+++|+.|++++|.+.+
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-------------------- 209 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-------------------- 209 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--------------------
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc--------------------
Confidence 555555555543 2222 1355555555555543 22 34455555555555554443
Q ss_pred ccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCch
Q 037786 261 HGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF 340 (565)
Q Consensus 261 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 340 (565)
++.. .++|+.|++++|.+. .++ .+..+++|++|++++|.++... ..+++|+.|++++|.++.+|..
T Consensus 210 ---l~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~l~-----~~~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 210 ---LPDL---PLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKTLP-----DLPPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp ---CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSSCC-----SCCTTCCEEECCSSCCSCCCCC
T ss_pred ---CCCC---cCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCCccc-----ccccccCEEECCCCcccccCcc
Confidence 2211 135566666666555 222 2555666666666666655311 1235677777777777766643
Q ss_pred hhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEcc
Q 037786 341 LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLAS 420 (565)
Q Consensus 341 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 420 (565)
. .+|+.|++++|.+++ ++. .+++|+.|++++|.++.++.. .++|++|++++|++.+ .|..+++|++|+++
T Consensus 276 ~--~~L~~L~ls~N~l~~-l~~-----~~~~L~~L~l~~N~l~~i~~~-~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~ 345 (454)
T 1jl5_A 276 P--QSLTFLDVSENIFSG-LSE-----LPPNLYYLNASSNEIRSLCDL-PPSLEELNVSNNKLIE-LPALPPRLERLIAS 345 (454)
T ss_dssp C--TTCCEEECCSSCCSE-ESC-----CCTTCCEEECCSSCCSEECCC-CTTCCEEECCSSCCSC-CCCCCTTCCEEECC
T ss_pred c--CcCCEEECcCCccCc-ccC-----cCCcCCEEECcCCcCCcccCC-cCcCCEEECCCCcccc-ccccCCcCCEEECC
Confidence 2 367778888777764 221 126788888888888776532 2588999999998886 66668999999999
Q ss_pred ccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeecc
Q 037786 421 NNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILIL 500 (565)
Q Consensus 421 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 500 (565)
+|++++ ++. .+ ++|++|++++|++.++|. ....+..| +.|...+.+|..+++|+.|+++
T Consensus 346 ~N~l~~-lp~---~l--------------~~L~~L~L~~N~l~~l~~-ip~~l~~L--~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 346 FNHLAE-VPE---LP--------------QNLKQLHVEYNPLREFPD-IPESVEDL--RMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp SSCCSC-CCC---CC--------------TTCCEEECCSSCCSSCCC-CCTTCCEE--ECCC------------------
T ss_pred CCcccc-ccc---hh--------------hhccEEECCCCCCCcCCC-ChHHHHhh--hhcccccccccccCcCCEEECC
Confidence 998884 333 23 899999999999998643 11234443 3566777777788999999999
Q ss_pred Cceeee--ccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCc
Q 037786 501 NNQFTG--EIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWC 543 (565)
Q Consensus 501 ~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 543 (565)
+|.+++ .+| ++|+.|.+++|.+.+..|.+........
T Consensus 405 ~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~~~~~ 443 (454)
T 1jl5_A 405 TNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHETTDKLE 443 (454)
T ss_dssp ---------------------------------------------
T ss_pred CCcCCccccch------hhHhheeCcCcccCCccccCHHHhhhcc
Confidence 999986 344 3678888999999887776665544433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-34 Score=293.26 Aligned_cols=358 Identities=19% Similarity=0.191 Sum_probs=242.2
Q ss_pred CeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccc-cCCCCCcCCCCCCEEEccc
Q 037786 134 AVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTG-SIPSHGSGLQNLAVLRLYN 211 (565)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 211 (565)
+.++.+++.++ .+|. + .+++++|++++|.+....+. +..+++|++|++++|.+.+ ..+..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35666666665 3444 2 26788888888888766544 7888888888888887753 3456677788888888888
Q ss_pred ccccCCCchhhcCCCCCCEEEccCCcccccC--C--CCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCc
Q 037786 212 NTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL--D--AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287 (565)
Q Consensus 212 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 287 (565)
|.+....+..+..+++|++|++++|.+.+.. . ....++|++|++++|.+++..+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------------- 148 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-------------------- 148 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc--------------------
Confidence 8877666777777888888888777776421 1 113345555555555554433332
Q ss_pred cChHhhhcCCCCCEEEccCCccccccCCcccC-CCCCccEEEcCCCCCCCCCchh----------hccccceEeccCCcC
Q 037786 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNS-SFPQIFILSLSACNISAFPSFL----------RSLELAYLDLSENNI 356 (565)
Q Consensus 288 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~----------~~~~L~~L~l~~n~l 356 (565)
.+..+++|++|++++|.+.......+.. ....++.+++++|.+..++... ...+|+.|++++|.+
T Consensus 149 ----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 149 ----FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp ----GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred ----ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 2444444444444444444333322210 1134555555555555433221 112566666666666
Q ss_pred cccCChhhhhh-CCCCccEEEcCCCccCCccC---------------CCCCCCCeEEcCCCcccccCCCC---CCCCcEE
Q 037786 357 DGQIPNWMWEV-GKDTLSFLDLSHNFITEMKQ---------------IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFL 417 (565)
Q Consensus 357 ~~~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~---------------~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L 417 (565)
++..+..+... ..++++.|++++|....... ...++|+.|++++|.+.+..+.. +++|++|
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 304 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEE
Confidence 65554444321 12566666666664333211 13368999999999988766653 7899999
Q ss_pred EccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CC
Q 037786 418 LASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PP 491 (565)
Q Consensus 418 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~ 491 (565)
++++|++++..+..+..+ ++|++|++++|.+.++ +. ..+++|+.|++++|.+++..+. .+
T Consensus 305 ~Ls~n~l~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGL--------------THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp ECTTSCCCEECTTTTTTC--------------TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ECCCCcccccChhHhcCc--------------ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 999999998888888887 9999999999999888 43 6789999999999999876554 78
Q ss_pred CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCC
Q 037786 492 SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 533 (565)
++|++|++++|.+++..+..++.+++|++|++++|++.|..|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999998777788999999999999999998865
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-34 Score=292.13 Aligned_cols=357 Identities=23% Similarity=0.216 Sum_probs=179.1
Q ss_pred cccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCC
Q 037786 102 SICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRIS 181 (565)
Q Consensus 102 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 181 (565)
.+.++++|++|++++|.+++. | .+..+++|++|++++|.+++. + ++.+++|++|++++|.+.+. .++.+++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCC
Confidence 344445555555555554432 2 344455555555555554432 1 44445555555555554432 144455555
Q ss_pred EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccc
Q 037786 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLH 261 (565)
Q Consensus 182 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 261 (565)
+|++++|.+.+. + +..+++|++|++++|.+.+. .+..+++|+.|++++|...+.......++|++|++++|.++
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc
Confidence 555555554432 1 44445555555555554432 13444455555555553332222223344444444444444
Q ss_pred cCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchh
Q 037786 262 GSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL 341 (565)
Q Consensus 262 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~ 341 (565)
+ ++ +..+++|+.|++++|.+.+. .++.+++|++|++++|+++... ...+++|+.|++++|+++.++. .
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~~-~ 251 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDV-S 251 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCC-T
T ss_pred e-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcCH-H
Confidence 2 22 33344444444444444332 1334444444444444443311 1333444444444444443321 1
Q ss_pred hccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccC-CccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEcc
Q 037786 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFIT-EMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLAS 420 (565)
Q Consensus 342 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 420 (565)
...+|+.|++++|. |+.+++++|.+. .++...+++|+.|++++|+..+..|...++|+.++++
T Consensus 252 ~l~~L~~L~l~~n~----------------L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 252 TLSKLTTLHCIQTD----------------LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp TCTTCCEEECTTCC----------------CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred HCCCCCEEeccCCC----------------CCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 11133333333221 222333333211 1121234455555555555444444444444444444
Q ss_pred ccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeecc
Q 037786 421 NNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILIL 500 (565)
Q Consensus 421 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 500 (565)
+| ++|++|++++|++++++...+++|+.|++++|++++ ++.|..|+++
T Consensus 316 ~~---------------------------~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~~-----l~~L~~L~l~ 363 (457)
T 3bz5_A 316 QN---------------------------PKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD-----FSSVGKIPAL 363 (457)
T ss_dssp TC---------------------------TTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCCB-----CTTGGGSSGG
T ss_pred hc---------------------------ccCCEEECCCCcccccccccCCcCcEEECCCCCCCC-----cccccccccc
Confidence 43 678888888888888766778888888888888877 3677778888
Q ss_pred CceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCC
Q 037786 501 NNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536 (565)
Q Consensus 501 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l 536 (565)
+|.+++. ..+.+|+.+++++|.+.+.+|+.+
T Consensus 364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp GTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 8888765 356678888888888888888765
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.8e-34 Score=291.32 Aligned_cols=374 Identities=18% Similarity=0.204 Sum_probs=284.8
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccC--CCCCCCCCCcEEEc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVF--PRSNWTSPLRCLDV 90 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~l 90 (565)
+.++.+++++..++. ++++|++|++++|.+++..+..+.++++|++|++++| ...+.+ ..+..+++|++|++
T Consensus 13 ~~~~c~~~~l~~lp~-----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLHQVPE-----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCSSCCC-----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcccCCC-----CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeC
Confidence 467888887776643 5689999999999999888999999999999999999 444332 33455699999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchh--ccCCCCCCeeeccCCcccccCCcC-ccCCCCCCEEEccCccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS--LGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 167 (565)
++|.+++..|..|.++++|++|++++|.+++..+.. |.++++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888899999999999999999988644444 889999999999999998776765 88999999999999998
Q ss_pred cccCcC-CcCC--CCCCEEeccCCcccccCCCC--------CcCCCCCCEEEcccccccCCCchhhcC---CCCCCEEEc
Q 037786 168 DGQFPD-IMNL--TRISRLDISNNQLTGSIPSH--------GSGLQNLAVLRLYNNTLSGTIPSWLFT---LPLLRDIDL 233 (565)
Q Consensus 168 ~~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l 233 (565)
....+. +..+ .+|+.++++++.+.+..+.. +..+++|++|++++|.+.+..+..+.. .++++.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 876554 5544 68899999999887654433 235678999999999887666655543 378889999
Q ss_pred cCCcccccCCCCCCCCCcEEEccCCccccCCchhhh--cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcccc
Q 037786 234 SDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIF--ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 311 (565)
++|...+..... +.+.+.....+. ..++|+.+++++|.+.+.. +..+..+++|++|++++|.+..
T Consensus 247 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 247 SNSYNMGSSFGH------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TTCTTTSCCTTC------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccccccch------------hhhccCcccccccccccCceEEEecCccccccc-hhhcccCCCCCEEECCCCcccc
Confidence 888765432111 111111111222 2367888888888877543 3567788888888888888876
Q ss_pred ccCCcccCCCCCccEEEcCCCCCCCCCc-hhhc-cccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-
Q 037786 312 GTTSKVNSSFPQIFILSLSACNISAFPS-FLRS-LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI- 388 (565)
Q Consensus 312 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~- 388 (565)
..+..+ ..+++|+.|++++|.++.++. .+.. .+|++|++++|.+++..|..+. .+++|++|++++|+++.++..
T Consensus 314 ~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 314 IDDNAF-WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp ECTTTT-TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTT
T ss_pred cChhHh-cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc--ccccccEEECCCCccccCCHhH
Confidence 555444 677888888888888876643 3333 3889999999988866676665 578999999999999998873
Q ss_pred --CCCCCCeEEcCCCcccccCC
Q 037786 389 --PWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 389 --~~~~L~~L~l~~n~~~~~~~ 408 (565)
.+++|++|++++|++.+..|
T Consensus 391 ~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCBCCCTT
T ss_pred hccCCcccEEEccCCCcccCCC
Confidence 67899999999999987654
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3e-33 Score=285.52 Aligned_cols=341 Identities=25% Similarity=0.320 Sum_probs=180.9
Q ss_pred CCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEec
Q 037786 106 LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185 (565)
Q Consensus 106 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 185 (565)
+++++.|++.++.+... + .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+....+ +..+++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 45677777777776543 2 3667777777777777776433 3 6777777777777777765544 667777777777
Q ss_pred cCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCc
Q 037786 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIP 265 (565)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 265 (565)
++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.|+++ +.+.....
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~~---------------------- 172 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP---------------------- 172 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCGG----------------------
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCchh----------------------
Confidence 7777664432 66677777777777766532 235666666666664 22222222
Q ss_pred hhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccc
Q 037786 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE 345 (565)
Q Consensus 266 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~ 345 (565)
+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+ ...+++|+.|++++|.++.++.+....+
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~ 244 (466)
T 1o6v_A 173 --LANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTN 244 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred --hccCCCCCEEECcCCcCCCC---hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCC
Confidence 33444444444444444322 124444555555555554443222 1334455555555555554443333335
Q ss_pred cceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccc
Q 037786 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQ 423 (565)
Q Consensus 346 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~ 423 (565)
|+.|++++|.+.+..+ +. .+++|+.|++++|.++.+++ ..+++|+.|++++|++.+..+. .+++|++|++++|+
T Consensus 245 L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred CCEEECCCCccccchh--hh--cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence 5555555555542222 11 34555555555555555443 2444555555555554432221 14555555555555
Q ss_pred cCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCCCcccccCCC-CCCCCcEeeccC
Q 037786 424 FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILN 501 (565)
Q Consensus 424 i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~ 501 (565)
+++..+ +..+ ++|++|++++|++.+.+. ..+++|+.|++++|.+++..|. .+++|+.|++++
T Consensus 321 l~~~~~--~~~l--------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 321 ISDISP--VSSL--------------TKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 384 (466)
T ss_dssp CSCCGG--GGGC--------------TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCC
T ss_pred CCCchh--hccC--------------ccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccC
Confidence 544333 3333 555555555555555522 4455555555555555443322 445555555555
Q ss_pred ceeee
Q 037786 502 NQFTG 506 (565)
Q Consensus 502 n~~~~ 506 (565)
|.+++
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 55543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.6e-33 Score=284.14 Aligned_cols=341 Identities=27% Similarity=0.366 Sum_probs=238.3
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
++++.|++.++.+. .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +..+++|++|++
T Consensus 46 ~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 78999999999988 455 48889999999999999987654 8999999999999999985443 899999999999
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
++|.+....+ +..+++|++|++++|.+.+. + .+..+++|+.|++++ .+... ..+..+++|+.|++++|.+.+..
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCCh
Confidence 9999886544 88999999999999998853 3 488899999999974 44322 34888999999999999887654
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.....++|++|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+..... ...++
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~ 265 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP---LSGLT 265 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCT
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchh---hhcCC
Confidence 43455667777777776664332 45566666666666666543 235556666666666666553322 24455
Q ss_pred CccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCC
Q 037786 323 QIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSN 401 (565)
Q Consensus 323 ~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n 401 (565)
+|+.|++++|.++.++.+. .+++|+.|++++|+++.+++. .+++|+.|++++|
T Consensus 266 ~L~~L~l~~n~l~~~~~~~--------------------------~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 266 KLTELKLGANQISNISPLA--------------------------GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp TCSEEECCSSCCCCCGGGT--------------------------TCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCcccccc--------------------------CCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC
Confidence 5555555555555444422 334445555555544444432 4455555555555
Q ss_pred cccccCCC-CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECC
Q 037786 402 LLQGPLPV-PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLR 479 (565)
Q Consensus 402 ~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls 479 (565)
++.+..+. .+++|++|++++|++++. ..+..+ ++|++|++++|++.+. |...+++|+.|+++
T Consensus 320 ~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l--------------~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 320 NISDISPVSSLTKLQRLFFYNNKVSDV--SSLANL--------------TNINWLSAGHNQISDLTPLANLTRITQLGLN 383 (466)
T ss_dssp CCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTC--------------TTCCEEECCSSCCCBCGGGTTCTTCCEEECC
T ss_pred cCCCchhhccCccCCEeECCCCccCCc--hhhccC--------------CCCCEEeCCCCccCccchhhcCCCCCEEecc
Confidence 55544332 266677777777776654 345555 7788888888887777 55777788888888
Q ss_pred CCcccc
Q 037786 480 SNLLQG 485 (565)
Q Consensus 480 ~n~l~~ 485 (565)
+|.+++
T Consensus 384 ~n~~~~ 389 (466)
T 1o6v_A 384 DQAWTN 389 (466)
T ss_dssp CEEEEC
T ss_pred CCcccC
Confidence 887766
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-33 Score=282.17 Aligned_cols=362 Identities=17% Similarity=0.195 Sum_probs=232.6
Q ss_pred cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccC
Q 037786 50 EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGN 129 (565)
Q Consensus 50 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 129 (565)
..+..++++++|++|++++| .+.+. +.+..+++|++|++++|.+++. + +..+++|++|++++|.+++. .+++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNS-SITDM-TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSS-CCCCC-TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTT
T ss_pred ccccChhHcCCCCEEEccCC-CcccC-hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCC
Confidence 34456677788888888777 44433 3444446677777777666642 2 56666666666666666553 2566
Q ss_pred CCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEc
Q 037786 130 VTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRL 209 (565)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 209 (565)
+++|++|++++|.+++ ++ +..+++|++|++++|.+.+. .++.+++|+.|++++|...+.. .+..+++|+.|++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 6666666666666654 22 55666666666666665543 2555566666666665332222 2444555555555
Q ss_pred ccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccC
Q 037786 210 YNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVE 289 (565)
Q Consensus 210 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 289 (565)
++|.+.+. + +..+++ |+.|++++|.+++. .+..+++|+.|++++|.+.+. +
T Consensus 178 s~n~l~~l-~--l~~l~~----------------------L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p 228 (457)
T 3bz5_A 178 SFNKITEL-D--VSQNKL----------------------LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D 228 (457)
T ss_dssp CSSCCCCC-C--CTTCTT----------------------CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C
T ss_pred CCCcccee-c--cccCCC----------------------CCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C
Confidence 55555432 1 344444 55555555554432 245566777777777777652 2
Q ss_pred hHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCC
Q 037786 290 PYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGK 369 (565)
Q Consensus 290 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 369 (565)
+..+++|+.|++++|+++... ...+++|+.|++++++ |+.+++++|.+.+.+|.. .+
T Consensus 229 ---~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~~~----~l 285 (457)
T 3bz5_A 229 ---VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQAE----GC 285 (457)
T ss_dssp ---CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEECT----TC
T ss_pred ---ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCC------------CCEEECCCCccCCccccc----cc
Confidence 566777777777777776543 2456777777777653 556777777766665522 56
Q ss_pred CCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCC
Q 037786 370 DTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK 449 (565)
Q Consensus 370 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (565)
++|+.|++++|......+...++|+.|++++| ++|++|++++|++++. .+..+
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~----------~~L~~L~L~~N~l~~l---~l~~l-------------- 338 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQN----------PKLVYLYLNNTELTEL---DVSHN-------------- 338 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC----------TTCCEEECTTCCCSCC---CCTTC--------------
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhc----------ccCCEEECCCCccccc---ccccC--------------
Confidence 88888888888765555556667777777666 5788999999998874 26666
Q ss_pred CCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhh
Q 037786 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSI 512 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 512 (565)
++|++|++++|+++++ +.|..|++++|.+.+. ..+..|+.+++++|.+++.+|..+
T Consensus 339 ~~L~~L~l~~N~l~~l-----~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQDF-----SSVGKIPALNNNFEAE--GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TTCSEEECCSSCCCBC-----TTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CcCcEEECCCCCCCCc-----cccccccccCCcEEec--ceeeecCccccccCcEEEEcChhH
Confidence 8999999999988874 4566677888888764 345678888999999988887543
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=7.4e-31 Score=261.75 Aligned_cols=307 Identities=21% Similarity=0.197 Sum_probs=230.5
Q ss_pred CCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
..++++++++++.++...+..|..+++|++|++++|.+....+.+|.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 37788888888888855555578899999999999998888888899999999999999999877778888999999999
Q ss_pred ccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 162 LGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999998877666 68899999999999998877777888899999999999988754 35667889999999988775
Q ss_pred cCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCC
Q 037786 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSS 320 (565)
Q Consensus 241 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 320 (565)
.. ..+.+++|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+ ..
T Consensus 201 ~~---~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~ 270 (390)
T 3o6n_A 201 LA---IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VK 270 (390)
T ss_dssp EE---CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TT
T ss_pred cC---CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHc-cc
Confidence 32 335788899998888743 322 246888888888888754 357888888888888888876555444 67
Q ss_pred CCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcC
Q 037786 321 FPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQ 399 (565)
Q Consensus 321 ~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 399 (565)
+++|+.|++++|+++.++...... +|+.|++++|++. .+|..+. .+++|+.|++++|+++.++...+++|+.|+++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 347 (390)
T ss_dssp CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH--HHTTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccc--ccCcCCEEECCCCccceeCchhhccCCEEEcC
Confidence 788888888888887666544332 6677777777666 4444443 23556666666666555544444445555544
Q ss_pred CCccc
Q 037786 400 SNLLQ 404 (565)
Q Consensus 400 ~n~~~ 404 (565)
+|++.
T Consensus 348 ~N~~~ 352 (390)
T 3o6n_A 348 HNDWD 352 (390)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 44443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=6.8e-31 Score=269.45 Aligned_cols=317 Identities=19% Similarity=0.162 Sum_probs=253.6
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l 90 (565)
-+.++.+++++..++. .+++++++|++++|.+++..+..|.++++|++|++++| .+.+..+ .+..+++|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE----GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCSSCCS----CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCcCCC----CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEEC
Confidence 3577888877776543 34578899999999888777888888999999999988 5555533 4455588999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
++|.++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|.+...
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99988866566678889999999999988888888888899999999999988877788888889999999999988766
Q ss_pred CcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC--CCCC
Q 037786 171 FPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD--AFPS 247 (565)
Q Consensus 171 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~ 247 (565)
.+. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|+.|++++|.+..... ....
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 654 7788899999999998887777788888999999999887665555555556689999999998875442 2266
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEE
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL 327 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 327 (565)
++|+.|++++|.+++..+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.++..... .+..+++|+.|
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L 325 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTLEES-VFHSVGNLETL 325 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE-CTTTBTTCTTCCEEECCSSCCSCCCGG-GBSCGGGCCEE
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceE-CHHHhcCcccCCEEECCCCcCceeCHh-HcCCCcccCEE
Confidence 8899999999988876667788888999999999988754 345788889999999999988764443 34778889999
Q ss_pred EcCCCCCC
Q 037786 328 SLSACNIS 335 (565)
Q Consensus 328 ~l~~~~l~ 335 (565)
++++|.+.
T Consensus 326 ~l~~N~l~ 333 (477)
T 2id5_A 326 ILDSNPLA 333 (477)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcc
Confidence 99999876
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=8e-31 Score=268.90 Aligned_cols=317 Identities=19% Similarity=0.188 Sum_probs=245.8
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
-+.++.++..++ .+|..+. +++++|++++| .+.+..+ .+..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 456777777776 4555443 57888888888 5555443 44555888899998888887778888888889999998
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccC
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSI 194 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 194 (565)
+|.++...+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 8888877777788888889999988888877788888888888998888888766554 788888888888888888665
Q ss_pred CCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhhcCC
Q 037786 195 PSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIFELA 272 (565)
Q Consensus 195 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~ 272 (565)
+..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.. ...+|++|++++|.++...+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 566778888888998888887666677888888888888888766544332 445788888888888854445677888
Q ss_pred CcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchh-h-ccccceEe
Q 037786 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL-R-SLELAYLD 350 (565)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~-~-~~~L~~L~ 350 (565)
+|+.|++++|.+... ++..+..+++|++|++++|.+....+..+ ..+++|+.|++++|.++.++... . ..+|+.|+
T Consensus 249 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 249 YLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp TCCEEECCSSCCCEE-CTTSCTTCTTCCEEECCSSCCSEECTTTB-TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccCeeECCCCcCCcc-ChhhccccccCCEEECCCCccceECHHHh-cCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 888899988888744 44567888888889998888876655544 77888888899888888777543 2 23888888
Q ss_pred ccCCcCccc
Q 037786 351 LSENNIDGQ 359 (565)
Q Consensus 351 l~~n~l~~~ 359 (565)
+++|++...
T Consensus 327 l~~N~l~c~ 335 (477)
T 2id5_A 327 LDSNPLACD 335 (477)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCc
Confidence 888888743
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.4e-31 Score=262.73 Aligned_cols=303 Identities=21% Similarity=0.168 Sum_probs=196.3
Q ss_pred CCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCcCcccc
Q 037786 202 QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSL 279 (565)
Q Consensus 202 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 279 (565)
++++.++++++.+....+..+..+++|++|++++|.+.+.... ...++|++|++++|.+++..+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3444444444444433333344444555555555544433221 13445555555555555444445556666666666
Q ss_pred ccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc
Q 037786 280 ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ 359 (565)
Q Consensus 280 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~ 359 (565)
++|.+.. ++...+..+++|++|++++|.+.......+ ..+++|+.|++++|.++.++ .....+|+.+++++|.+++
T Consensus 125 ~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSE-
T ss_pred CCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECCCCcCCccc-cccccccceeecccccccc-
Confidence 6666653 333445666666666666666654433333 55666677777766666543 1222367777777776652
Q ss_pred CChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCC
Q 037786 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTL 438 (565)
Q Consensus 360 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 438 (565)
++ ..+.|+.|++++|.++.++...+++|+.|++++|.+.+... ..+++|++|++++|++++..+..+..+
T Consensus 201 ~~------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--- 271 (390)
T 3o6n_A 201 LA------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM--- 271 (390)
T ss_dssp EE------CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC---
T ss_pred cC------CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc---
Confidence 11 23578888888888877777667788888888888775421 127888888888888888778888777
Q ss_pred CCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeeccchhhhc
Q 037786 439 EIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEIIHSICD 514 (565)
Q Consensus 439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~ 514 (565)
++|++|++++|++..+|. ..+++|+.|++++|.+.+..+. .+++|++|++++|.+++.. +..
T Consensus 272 -----------~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~ 337 (390)
T 3o6n_A 272 -----------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LST 337 (390)
T ss_dssp -----------SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred -----------ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---chh
Confidence 888899999998888843 5678899999999988753222 6788899999999887543 677
Q ss_pred CCCCCEEeCCCCcCccc
Q 037786 515 IIALDVLDLSNNRLSGT 531 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~ 531 (565)
+++|+.|++++|++.+.
T Consensus 338 ~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred hccCCEEEcCCCCccch
Confidence 88899999999998864
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.2e-30 Score=253.12 Aligned_cols=303 Identities=23% Similarity=0.325 Sum_probs=163.8
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++|++|+++++.+.. .+ .+..+++|++|++++| .+.+..+ +..+++|++|++++|.++. + ..+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 455555555555542 22 2445555555555554 2322222 3333555555555555542 2 23555566666666
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccC
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSI 194 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 194 (565)
++|.+....+ +..+++|+.|++++|..... +..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+..
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence 6555553322 55556666666665543322 2235555666666666655543322 555566666666666555332
Q ss_pred CCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCc
Q 037786 195 PSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANL 274 (565)
Q Consensus 195 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 274 (565)
+ +..+++|+.+++++|.+....+ +..+++|+.|++++|.+.+.......++|++|++++|.+++. ..+..+++|
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 2 4555666666666665553322 555666666666666665444434555666666666666532 345566666
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCC
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n 354 (565)
+.|++++|.+... ..+..+++|++|++++|.++...+..+ ..+++|+.|++++|+++.++......+|+.|++++|
T Consensus 268 ~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 268 KMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp CEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred CEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 7777766666543 235666677777777776654443333 556667777777777666655444446777777777
Q ss_pred cCc
Q 037786 355 NID 357 (565)
Q Consensus 355 ~l~ 357 (565)
+++
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.9e-30 Score=251.81 Aligned_cols=306 Identities=20% Similarity=0.293 Sum_probs=163.2
Q ss_pred ccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCC
Q 037786 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLA 134 (565)
Q Consensus 55 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 134 (565)
+..+++|++|+++++ .... ++.+..+++|++|++++|.++.. +. +..+++|++|++++|.++.. .++.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~-~~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVAS-IQGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCC-CTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCC-cccc-chhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 345666666666665 2222 22333345555555555555532 22 55555555555555555432 2355555555
Q ss_pred eeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccc
Q 037786 135 VLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 214 (565)
+|++++|.+.+. +. +..+++|+.|++++|......+.+..+++|+.|++++|.+.+..+
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------------- 172 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------------------- 172 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-------------------
Confidence 555555555422 22 445555555555555433333334444445555554444432221
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 294 (565)
+..+++|+.|++++|.+.+.......++|+.+++++|.+.+..+ +..+++|+.|++++|.+.... .+.
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~---~~~ 240 (347)
T 4fmz_A 173 -------IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS---PLA 240 (347)
T ss_dssp -------GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGT
T ss_pred -------hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc---chh
Confidence 34444444444444444433322234445555555555443222 555666666666666665431 156
Q ss_pred cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccE
Q 037786 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374 (565)
Q Consensus 295 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 374 (565)
.+++|++|++++|.++.. .....+++|+.|++++|.++.++.+....+|+.|++++|++++..+..+. .+++|+.
T Consensus 241 ~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~ 315 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTT 315 (347)
T ss_dssp TCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHH--TCTTCSE
T ss_pred cCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhh--ccccCCE
Confidence 666777777777766543 12356667777777777776665444444777777777777655554444 4567777
Q ss_pred EEcCCCccCCccC-CCCCCCCeEEcCCCccc
Q 037786 375 LDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQ 404 (565)
Q Consensus 375 L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~ 404 (565)
|++++|+++.+++ ..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred EEccCCccccccChhhhhccceeehhhhccc
Confidence 7777777776655 35666777777666654
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.6e-30 Score=268.69 Aligned_cols=307 Identities=21% Similarity=0.202 Sum_probs=237.0
Q ss_pred CCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
..+++.++++++.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|+.+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 36788888888888866666678899999999999999888888899999999999999999887777888999999999
Q ss_pred ccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 162 LGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+++|.+...++. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 999998877766 68899999999999999888888888899999999999988754 25567889999999988775
Q ss_pred cCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCC
Q 037786 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSS 320 (565)
Q Consensus 241 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 320 (565)
.. .+..|+.|++++|.+... +..+ .++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+..+ ..
T Consensus 207 l~---~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~ 276 (597)
T 3oja_B 207 LA---IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VK 276 (597)
T ss_dssp EE---CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TT
T ss_pred cc---CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh-cC
Confidence 32 345788999999888743 2222 36788899999888753 457888889999999888876655554 67
Q ss_pred CCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcC
Q 037786 321 FPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQ 399 (565)
Q Consensus 321 ~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 399 (565)
+++|+.|++++|.++.++...... +|+.|++++|.++ .+|..+. .+++|+.|++++|.++.++...+++|+.|+++
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~ 353 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 353 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH--HHTTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccc--cCCCCCEEECCCCCCCCcChhhcCCCCEEEee
Confidence 788888888888888776555433 7777777777777 5555554 34667777777776666655555566666666
Q ss_pred CCccc
Q 037786 400 SNLLQ 404 (565)
Q Consensus 400 ~n~~~ 404 (565)
+|++.
T Consensus 354 ~N~~~ 358 (597)
T 3oja_B 354 HNDWD 358 (597)
T ss_dssp SSCEE
T ss_pred CCCCC
Confidence 55554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.8e-30 Score=268.13 Aligned_cols=301 Identities=21% Similarity=0.170 Sum_probs=187.0
Q ss_pred CCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCcCccccc
Q 037786 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLA 280 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 280 (565)
+++.++++++.+....+..+..+++|+.|++++|.+.+..+. ...++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 344444444444333333344444444444444444433221 133444555555555544444445555666666666
Q ss_pred cccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccC
Q 037786 281 SNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI 360 (565)
Q Consensus 281 ~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~ 360 (565)
+|.+.. +++..++.+++|+.|++++|.++...+..+ ..+++|+.|++++|.++.++. ....+|+.|++++|.+++ +
T Consensus 132 ~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~L~l~~n~l~~-l 207 (597)
T 3oja_B 132 RNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLST-L 207 (597)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTSCCSBCCG-GGCTTCSEEECCSSCCSE-E
T ss_pred CCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCCCCCCcCh-hhhhhhhhhhcccCcccc-c
Confidence 666553 233445566666666666666654433333 555666666666666665431 122266677777766652 1
Q ss_pred ChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCCC
Q 037786 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTLE 439 (565)
Q Consensus 361 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 439 (565)
+ .+++|+.|++++|.++.++....++|+.|++++|.+.+... ..+++|++|++++|.+++..+..+..+
T Consensus 208 ~------~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---- 277 (597)
T 3oja_B 208 A------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM---- 277 (597)
T ss_dssp E------CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC----
T ss_pred c------CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc----
Confidence 1 34567777777777777777666778888888887775321 127888888888888887777777777
Q ss_pred CCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhc
Q 037786 440 IPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICD 514 (565)
Q Consensus 440 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~ 514 (565)
++|++|++++|.+..+|. ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++.. +..
T Consensus 278 ----------~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~ 343 (597)
T 3oja_B 278 ----------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LST 343 (597)
T ss_dssp ----------SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred ----------cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhh
Confidence 888888888888888743 557888888888888875 333 6788888888888887543 567
Q ss_pred CCCCCEEeCCCCcCccc
Q 037786 515 IIALDVLDLSNNRLSGT 531 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~ 531 (565)
+++|+.|++++|++.|.
T Consensus 344 ~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred cCCCCEEEeeCCCCCCh
Confidence 78888888888888764
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.7e-31 Score=268.11 Aligned_cols=376 Identities=19% Similarity=0.194 Sum_probs=177.6
Q ss_pred CCCcEEEccCCccCccCCcc-ccCCCCCCEEEcccccCccc----CchhccCCCCCCeeeccCCcccccCCcCc-cCCC-
Q 037786 83 SPLRCLDVSGTRFSGQLPDS-ICNLRHLRELHLSQCNFYGF----LPASLGNVTQLAVLSLSFKSFSGHIPPSL-SNLH- 155 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~- 155 (565)
++|++|+++++.++...... +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777765433222 55667777777777776542 24455666777777777776654322222 1222
Q ss_pred ---CCCEEEccCcccccc-----CcCCcCCCCCCEEeccCCcccccCCCC-----CcCCCCCCEEEcccccccCCC----
Q 037786 156 ---QLTDVDLGSNSFDGQ-----FPDIMNLTRISRLDISNNQLTGSIPSH-----GSGLQNLAVLRLYNNTLSGTI---- 218 (565)
Q Consensus 156 ---~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~l~~~~---- 218 (565)
+|++|++++|.+... ...+..+++|++|++++|.+.+..+.. ....++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 566666666665521 122555556666666665554321111 112334555555555544321
Q ss_pred chhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhh-----cCCCcCccccccccccCcc---Ch
Q 037786 219 PSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIF-----ELANLTYLSLASNNFSGIV---EP 290 (565)
Q Consensus 219 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~---~~ 290 (565)
+..+..+++|++|++++|.+.+ .....+. ..++|++|++++|.+.... .+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~----------------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINE----------------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHH----------------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcch----------------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 2223334444444444444332 1111111 1335555555555554321 12
Q ss_pred HhhhcCCCCCEEEccCCccccccCC----cccCCCCCccEEEcCCCCCCC-----CCchhhc-cccceEeccCCcCcccC
Q 037786 291 YMLAKLVNLAALELSHNSLSFGTTS----KVNSSFPQIFILSLSACNISA-----FPSFLRS-LELAYLDLSENNIDGQI 360 (565)
Q Consensus 291 ~~l~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~-~~L~~L~l~~n~l~~~~ 360 (565)
..+..+++|++|++++|.++..... .+...+++|+.|++++|.++. ++..+.. .+|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 3344556666666666655433221 111234555555555555543 2222221 24555555555444322
Q ss_pred ChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC----C---CCCCCcEEEccccccCccchhhhh
Q 037786 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP----V---PPPRLQFLLASNNQFTGEIIQSIC 433 (565)
Q Consensus 361 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~----~---~~~~L~~L~l~~n~i~~~~~~~l~ 433 (565)
+..+...- ....++|++|++++|.+.+... . .+++|++|++++|++++..+..++
T Consensus 301 ~~~l~~~l------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 301 ARLLCETL------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp HHHHHHHH------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred HHHHHHHh------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 22221100 0011345555555555443211 1 145666666666666555444444
Q ss_pred hcCCCCCCccccccCCCCCcEEeCcCCCCCC-----Ccc--cCCCcccEEECCCCccccc--------CCCCCCCCcEee
Q 037786 434 SSSTLEIPSWISEIGKDSLSYLNLSHNFITK-----MKQ--ISWKNLGYLDLRSNLLQGP--------LLVPPSSLRVIL 498 (565)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~--~~~~~L~~L~ls~n~l~~~--------~~~~~~~L~~L~ 498 (565)
..-. ...++|++|++++|.+++ ++. ..+++|+.|++++|.+++. ++....+|+.|+
T Consensus 363 ~~l~---------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~ 433 (461)
T 1z7x_W 363 QGLG---------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433 (461)
T ss_dssp HHHT---------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHc---------CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee
Confidence 3100 001566666666666663 222 3456666666666665531 222334566666
Q ss_pred ccCceeeec
Q 037786 499 ILNNQFTGE 507 (565)
Q Consensus 499 l~~n~~~~~ 507 (565)
+.++.+...
T Consensus 434 ~~~~~~~~~ 442 (461)
T 1z7x_W 434 LYDIYWSEE 442 (461)
T ss_dssp CTTCCCCHH
T ss_pred ecccccCHH
Confidence 655555433
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.4e-27 Score=229.61 Aligned_cols=289 Identities=19% Similarity=0.248 Sum_probs=153.0
Q ss_pred CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEE
Q 037786 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLD 89 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~ 89 (565)
+++.++++++.+...+. ..++++++|++++|.+++..+..+.++++|++|++++| .+.+..+ .+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCC----SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCc----cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEE
Confidence 45666666666554432 12355666666666666555555666666666666666 3433322 233335666666
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc--cCCcCccCCCCCCEEEccCccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG--HIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
+++|.++ .+|..+. ++|++|++++|.+....+..|.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 6666555 3333332 456666666666555555555666666666666665542 3444555556666666665555
Q ss_pred cccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCC
Q 037786 168 DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247 (565)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 247 (565)
...+..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 184 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N----------- 250 (330)
T 1xku_A 184 TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN----------- 250 (330)
T ss_dssp CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-----------
T ss_pred ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-----------
Confidence 54333222 45555555555555444445555555555555555554433344444455555555544
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhh------cCCCCCEEEccCCccccc-cCCcccCC
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA------KLVNLAALELSHNSLSFG-TTSKVNSS 320 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~------~~~~L~~L~l~~~~i~~~-~~~~~~~~ 320 (565)
.++ .+|..+..+++|++|++++|.+... +...+. ..+.++.+++++|++... .....+..
T Consensus 251 -----------~l~-~lp~~l~~l~~L~~L~l~~N~i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 251 -----------KLV-KVPGGLADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp -----------CCS-SCCTTTTTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred -----------cCc-cCChhhccCCCcCEEECCCCcCCcc-ChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 444 4444455555666666666655533 222222 235677777777776532 22233466
Q ss_pred CCCccEEEcCCCC
Q 037786 321 FPQIFILSLSACN 333 (565)
Q Consensus 321 ~~~L~~L~l~~~~ 333 (565)
+..++.+++++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 6777777777763
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.6e-27 Score=228.64 Aligned_cols=247 Identities=23% Similarity=0.255 Sum_probs=156.1
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (565)
+++.++++++.++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|.+.+..|.++..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555 344333 2456666666666665555556666666666666666665556666666666666666
Q ss_pred CccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC--CCchhhcCCCCCCEEEccCCccccc
Q 037786 164 SNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG--TIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
+|.+......+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+...
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 666654433332 566667776666665555556666777777777776642 3455666777777777777777644
Q ss_pred CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCC
Q 037786 242 LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSF 321 (565)
Q Consensus 242 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 321 (565)
.... .++|++|++++|.+++..+..+..+++|+.|++++|.+... ++..+..+++|++|++++|.++. .+.. ...+
T Consensus 187 ~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-lp~~-l~~l 262 (330)
T 1xku_A 187 PQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLVK-VPGG-LADH 262 (330)
T ss_dssp CSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCSS-CCTT-TTTC
T ss_pred Cccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCcc-CChh-hccC
Confidence 3332 26777788887777766666777777888888888777644 33456777777777777777762 2222 3566
Q ss_pred CCccEEEcCCCCCCCCCc
Q 037786 322 PQIFILSLSACNISAFPS 339 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~~ 339 (565)
++|+.|++++|+++.++.
T Consensus 263 ~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp SSCCEEECCSSCCCCCCT
T ss_pred CCcCEEECCCCcCCccCh
Confidence 777777777777765553
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.6e-27 Score=230.55 Aligned_cols=285 Identities=20% Similarity=0.273 Sum_probs=157.3
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++++++++++.++ .+|..+. ++|++|++++| .+....+ .+..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555555555554 3343332 45555555555 3333322 2333355556666666555555555666666666666
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc--cCcC-CcCCCCCCEEeccCCccc
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG--QFPD-IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~ 191 (565)
++|.++.. |..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+. +..+ +|+.|++++|.++
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 66665532 22222 566666666666654444455666666666666665542 2222 4444 5666666666655
Q ss_pred ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhh
Q 037786 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIF 269 (565)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~ 269 (565)
+ +|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.+..+. ...++|++|++++|.++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 3 333222 4666666666666555555566666666666666666554432 24456666666666666 5566666
Q ss_pred cCCCcCccccccccccCccChHhhhc------CCCCCEEEccCCcccc-ccCCcccCCCCCccEEEcCCCC
Q 037786 270 ELANLTYLSLASNNFSGIVEPYMLAK------LVNLAALELSHNSLSF-GTTSKVNSSFPQIFILSLSACN 333 (565)
Q Consensus 270 ~~~~L~~L~l~~n~~~~~~~~~~l~~------~~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~~~ 333 (565)
.+++|+.|++++|.+... +...+.. .+.|+.+++++|++.. ......+..++.|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCcc-ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777777777777643 2233332 3567788888887652 2223334667778888877764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.8e-27 Score=228.67 Aligned_cols=245 Identities=22% Similarity=0.267 Sum_probs=139.2
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (565)
+++.++++++.++ .+|..+ .+++++|++++|.+....+..|.++++|++|++++|.+++..+.++..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444555555544 334333 2455555555555555545555555555555555555555445555555555555555
Q ss_pred CccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC--CCchhhcCCCCCCEEEccCCccccc
Q 037786 164 SNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG--TIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
+|.+...+..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+...
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 555554333332 556666666665554444445556666666666665532 334444444 666666666666543
Q ss_pred CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCC
Q 037786 242 LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSF 321 (565)
Q Consensus 242 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 321 (565)
.... .++|++|++++|.+++..+..+..+++|+.|++++|.+... ++..+..+++|++|++++|.++. .+.. ...+
T Consensus 188 ~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-lp~~-l~~l 263 (332)
T 2ft3_A 188 PKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNNKLSR-VPAG-LPDL 263 (332)
T ss_dssp CSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEECCSSCCCB-CCTT-GGGC
T ss_pred Cccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEECCCCcCee-cChh-hhcC
Confidence 3222 25677777777777655556666777777777777777643 33456667777777777776652 2222 2556
Q ss_pred CCccEEEcCCCCCCCCC
Q 037786 322 PQIFILSLSACNISAFP 338 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~ 338 (565)
++|+.|++++|+++.++
T Consensus 264 ~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TTCCEEECCSSCCCBCC
T ss_pred ccCCEEECCCCCCCccC
Confidence 66666666666666544
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=8.7e-31 Score=267.75 Aligned_cols=374 Identities=19% Similarity=0.170 Sum_probs=209.1
Q ss_pred CCCCcEEEcCCCcCCCCCchh-hhhcCCCccEEEccCCccccc----CCccccCCCCCCEEecCCCCCCCcc-CCC----
Q 037786 9 VTKLQLLFLDYVDMSTVVPGT-LKNLSSSLTSLSLSYCRIQGE----FPENIFRLSNLQMVRLKFNSNLSGV-FPR---- 78 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~L~~~~~~~~~-~~~---- 78 (565)
.+++++|+++++++.+..... +..+ ++|++|++++|.++.. ++..+..+++|++|++++| .+.+. ...
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 357899999999988766555 6666 8999999999998743 4567788899999999988 34321 111
Q ss_pred CCCC-CCCcEEEccCCccCc----cCCccccCCCCCCEEEcccccCcccCchhcc-----CCCCCCeeeccCCccccc--
Q 037786 79 SNWT-SPLRCLDVSGTRFSG----QLPDSICNLRHLRELHLSQCNFYGFLPASLG-----NVTQLAVLSLSFKSFSGH-- 146 (565)
Q Consensus 79 ~~~~-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~-- 146 (565)
.... ++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 1111 267888888777763 3466677777788888877776654343332 245677777777766642
Q ss_pred --CCcCccCCCCCCEEEccCccccccCcC-Cc-----CCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccc
Q 037786 147 --IPPSLSNLHQLTDVDLGSNSFDGQFPD-IM-----NLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 147 --~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l 214 (565)
++..+..+++|++|++++|.+...... +. ..++|+.|++++|.++.. ++..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 234445566777777776665432111 11 234555555555554431 122333444555555555544
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccC----CchhhhcCCCcCccccccccccCccCh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGS----IPSSIFELANLTYLSLASNNFSGIVEP 290 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~ 290 (565)
.......+. .......++|++|++++|.+++. ++..+..+++|++|++++|.+.+...
T Consensus 240 ~~~~~~~l~-----------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~- 301 (461)
T 1z7x_W 240 GDVGMAELC-----------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA- 301 (461)
T ss_dssp HHHHHHHHH-----------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-
T ss_pred ChHHHHHHH-----------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-
Confidence 321110000 00001234455555555555432 34445556666666666666543211
Q ss_pred Hhhh-----cCCCCCEEEccCCccccccCCc---ccCCCCCccEEEcCCCCCCCCC-----chhh--ccccceEeccCCc
Q 037786 291 YMLA-----KLVNLAALELSHNSLSFGTTSK---VNSSFPQIFILSLSACNISAFP-----SFLR--SLELAYLDLSENN 355 (565)
Q Consensus 291 ~~l~-----~~~~L~~L~l~~~~i~~~~~~~---~~~~~~~L~~L~l~~~~l~~l~-----~~~~--~~~L~~L~l~~n~ 355 (565)
..+. ..++|++|++++|.++...... ....+++|+.|++++|.++... ..+. ..+|++|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 1111 1246666666666665432211 1234466666666666665221 1111 2267777777776
Q ss_pred Ccc----cCChhhhhhCCCCccEEEcCCCccCCccC--------CCCCCCCeEEcCCCccc
Q 037786 356 IDG----QIPNWMWEVGKDTLSFLDLSHNFITEMKQ--------IPWKNLKYLKLQSNLLQ 404 (565)
Q Consensus 356 l~~----~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~l~~n~~~ 404 (565)
+++ .++..+. .+++|++|++++|+++.... ....+|+.|++.++.+.
T Consensus 382 i~~~~~~~l~~~l~--~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 382 VSDSSCSSLAATLL--ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCHHHHHHHHHHHH--HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CChhhHHHHHHHHH--hCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 664 3444443 35677777777777665533 12345777777666554
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.7e-30 Score=269.30 Aligned_cols=339 Identities=14% Similarity=0.058 Sum_probs=164.9
Q ss_pred CCCCCCEEEcccccCcccC----chhccCCCCCCeeeccCCccc----ccCCcCccCCCCCCEEEccCccccccCcCCcC
Q 037786 105 NLRHLRELHLSQCNFYGFL----PASLGNVTQLAVLSLSFKSFS----GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMN 176 (565)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 176 (565)
.+++|++|++++|.+.+.. +..+..+++|+.|+++++.++ ..++..+..+++|+.|++++|.+.+....+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 5566666666666554332 223345566666666666554 12223344556666666666665544433555
Q ss_pred CCCCCEEeccCCccc---ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC---CCCCCCC
Q 037786 177 LTRISRLDISNNQLT---GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD---AFPSKSL 250 (565)
Q Consensus 177 ~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~L 250 (565)
+++|+++++++.... ......+..+++|+.++++++... ..+..+..+++|++|++++|.+.+... ...+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 666666666542211 122234455566666666654322 344455556666666666666432211 1234555
Q ss_pred cEEEccCCcccc-CCchhhhcCCCcCcccccc-----------ccccCccChHhhhcCCCCCEEEccCCccccccCCccc
Q 037786 251 RKLYLTNNRLHG-SIPSSIFELANLTYLSLAS-----------NNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVN 318 (565)
Q Consensus 251 ~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 318 (565)
++|++.+ .+.+ ..+.....+++|++|++++ +.++..........+++|++|+++.+.+++.....+.
T Consensus 321 ~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 5555552 2221 1222334556666666662 3333222222334566666666666665554444443
Q ss_pred CCCCCccEEEcC----CCCCCCCC------chhh-ccccceEeccCCc--CcccCChhhhhhCCCCccEEEcCCCccCCc
Q 037786 319 SSFPQIFILSLS----ACNISAFP------SFLR-SLELAYLDLSENN--IDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 319 ~~~~~L~~L~l~----~~~l~~l~------~~~~-~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 385 (565)
..+++|+.|+++ .+.++..| .... ..+|+.|++++|. +++.....+..
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~------------------- 460 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ------------------- 460 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH-------------------
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH-------------------
Confidence 335566666664 33343321 1111 1245555554322 33222222221
Q ss_pred cCCCCCCCCeEEcCCCcccccC----CCCCCCCcEEEccccccCccchhhh-hhcCCCCCCccccccCCCCCcEEeCcCC
Q 037786 386 KQIPWKNLKYLKLQSNLLQGPL----PVPPPRLQFLLASNNQFTGEIIQSI-CSSSTLEIPSWISEIGKDSLSYLNLSHN 460 (565)
Q Consensus 386 ~~~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~n 460 (565)
.+++|++|++++|++++.. ...+++|++|++++|.+++.....+ ..+ ++|++|++++|
T Consensus 461 ---~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l--------------~~L~~L~ls~n 523 (592)
T 3ogk_B 461 ---YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL--------------PSLRYLWVQGY 523 (592)
T ss_dssp ---SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC--------------SSCCEEEEESC
T ss_pred ---hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc--------------CccCeeECcCC
Confidence 2445555555555544311 1235666666666666554433332 344 66666666666
Q ss_pred CCCCCcc----cCCCcccEEECCCC
Q 037786 461 FITKMKQ----ISWKNLGYLDLRSN 481 (565)
Q Consensus 461 ~l~~~~~----~~~~~L~~L~ls~n 481 (565)
++++... ..+|.+....+..+
T Consensus 524 ~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 524 RASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp BCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCHHHHHHHHHhCCCcEEEEecCc
Confidence 6655411 34555555444443
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.3e-27 Score=230.16 Aligned_cols=247 Identities=28% Similarity=0.432 Sum_probs=142.8
Q ss_pred CccEEEccCCcccc--cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEE
Q 037786 36 SLTSLSLSYCRIQG--EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELH 113 (565)
Q Consensus 36 ~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (565)
++++|+++++.+++ ..|..+.++++|++|++++ .+.+.+.+|..|.++++|++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~-----------------------~n~l~~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG-----------------------INNLVGPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE-----------------------ETTEESCCCGGGGGCTTCSEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC-----------------------CCcccccCChhHhcCCCCCEEE
Confidence 45555555555554 4555555555555555542 1444445555666666666666
Q ss_pred cccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCc-CCcCCC-CCCEEeccCCccc
Q 037786 114 LSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLT-RISRLDISNNQLT 191 (565)
Q Consensus 114 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~-~L~~L~l~~~~~~ 191 (565)
+++|.+++..|..|.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..+ .+..++ .|+.|++++|.+.
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 66666655556666666666666666666665566666666666666666666653333 355555 6666666666666
Q ss_pred ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccccCCchhhhc
Q 037786 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLHGSIPSSIFE 270 (565)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 270 (565)
+..+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. ..++|++|++++|.+++..|..+..
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhc
Confidence 55555555554 666666666666555566666666666666666665333222 3455666666666655555555666
Q ss_pred CCCcCccccccccccCccChHhhhcCCCCCEEEccCCc
Q 037786 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 271 ~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
+++|+.|++++|.+.+.++. ...+++|+.+++++|+
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred CcCCCEEECcCCcccccCCC--CccccccChHHhcCCC
Confidence 66666666666665544432 1445555555555554
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.4e-27 Score=228.15 Aligned_cols=248 Identities=28% Similarity=0.420 Sum_probs=167.7
Q ss_pred CCCcEEEcCCCcCCC--CCchhhhhcCCCccEEEccC-CcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCC
Q 037786 10 TKLQLLFLDYVDMST--VVPGTLKNLSSSLTSLSLSY-CRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPL 85 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~--~~~~~~~~l~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L 85 (565)
.++++|+++++.+.+ ..+..+..+ ++|++|++++ |.+.+..|..+.++++|++|++++| .+.+..+. +...++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCC
Confidence 589999999999998 778899998 9999999995 8898889999999999999999887 44433333 3334666
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCC-CCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVT-QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
++|++++|.+++.+|..|..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 6666666666666666666666666666666666656666666665 666666666666666666666655 66666666
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
|.+.+..+. +..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~---- 281 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC---- 281 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE----
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc----
Confidence 666544443 55666666666666666544333 455566666666666665555555555555555555555554
Q ss_pred CCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccc
Q 037786 244 AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284 (565)
Q Consensus 244 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 284 (565)
+.+|.. ..+++|+.+++++|+.
T Consensus 282 ------------------~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 282 ------------------GEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp ------------------EECCCS-TTGGGSCGGGTCSSSE
T ss_pred ------------------ccCCCC-ccccccChHHhcCCCC
Confidence 344443 4566777777777763
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=6.1e-29 Score=262.39 Aligned_cols=416 Identities=14% Similarity=0.100 Sum_probs=275.8
Q ss_pred hHHHhhCCCCCcEEEcCCCcC-C----------CCC---chhhh-hcCCCccEEEccCCcccccCCccccC-CCC-CCEE
Q 037786 2 MEALVQNVTKLQLLFLDYVDM-S----------TVV---PGTLK-NLSSSLTSLSLSYCRIQGEFPENIFR-LSN-LQMV 64 (565)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~-~----------~~~---~~~~~-~l~~~L~~L~l~~~~i~~~~~~~~~~-l~~-L~~L 64 (565)
.+.+++++++|++|+++++.. . ... ...+. .+ ++|++|++++|.+++..+..+.. ++. |++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 467888999999999987532 1 111 11222 44 88999999999887666666655 444 9999
Q ss_pred ecCCCCCCCc-cCCC-CCCCCCCcEEEccCCccCcc----CCccccCCCCCCEEEcccccCcc----cCchhccCCCCCC
Q 037786 65 RLKFNSNLSG-VFPR-SNWTSPLRCLDVSGTRFSGQ----LPDSICNLRHLRELHLSQCNFYG----FLPASLGNVTQLA 134 (565)
Q Consensus 65 ~L~~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~ 134 (565)
++++|..... .+.. ...+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ ..+..+.++++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9998842211 1111 12448899999999987654 23345678899999999988763 3344456789999
Q ss_pred eeeccCCcccccCCcCccCCCCCCEEEccCcccc----ccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcc
Q 037786 135 VLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD----GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210 (565)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 210 (565)
.|++++|.+.+ ++..+..+++|+.|++++.... .....+..+++|+.++++++... ..+..+..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecC
Confidence 99999988774 5677888899999999864322 12223777888999988875433 456667778899999999
Q ss_pred cccccCCCc-hhhcCCCCCCEEEccCCccccc-CCC--CCCCCCcEEEccC-----------CccccCC-chhhhcCCCc
Q 037786 211 NNTLSGTIP-SWLFTLPLLRDIDLSDNQLTGH-LDA--FPSKSLRKLYLTN-----------NRLHGSI-PSSIFELANL 274 (565)
Q Consensus 211 ~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~--~~~~~L~~L~l~~-----------~~~~~~~-~~~~~~~~~L 274 (565)
+|.+..... ..+..+++|+.|++. +.+.+. ... ..+++|++|++++ +.+++.. ......+++|
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 988653322 346788999999988 333321 111 1457799999983 4554332 2234458899
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEcc----CCccccc----cCCcccCCCCCccEEEcCCCC--CC--CCCchhh
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELS----HNSLSFG----TTSKVNSSFPQIFILSLSACN--IS--AFPSFLR 342 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~----~~~i~~~----~~~~~~~~~~~L~~L~l~~~~--l~--~l~~~~~ 342 (565)
++|+++.+.+++.........+++|+.|+++ .+.+++. ....+...+++|+.|++++|. ++ .+.....
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 9999987777655333333348899999996 4455542 122223568889999997654 44 1222222
Q ss_pred -ccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCCC----CCCC
Q 037786 343 -SLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPV----PPPR 413 (565)
Q Consensus 343 -~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~----~~~~ 413 (565)
..+|++|++++|++++.....+.. ++++|+.|++++|.++.... ..+++|++|++++|+++..... .+|.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSR-GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHT-CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred hCccceEeeccCCCCCHHHHHHHHh-cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 237999999999887533333322 67889999999998764322 2578999999999998765332 3666
Q ss_pred CcEEEcccc
Q 037786 414 LQFLLASNN 422 (565)
Q Consensus 414 L~~L~l~~n 422 (565)
+....+..+
T Consensus 540 l~~~~~~~~ 548 (592)
T 3ogk_B 540 WNIELIPSR 548 (592)
T ss_dssp EEEEEECCC
T ss_pred cEEEEecCc
Confidence 666555443
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=8.1e-26 Score=235.08 Aligned_cols=265 Identities=23% Similarity=0.268 Sum_probs=173.5
Q ss_pred CCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccC
Q 037786 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 306 (565)
+++.|++++|.+...+.... ++|+.|++++|.++ .++. .+++|++|++++|.+... +. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV----LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC----CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC----CCCCCCEEECcC
Confidence 35555555555553322222 55566666666555 3333 345666666666666532 21 456677777777
Q ss_pred CccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc
Q 037786 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK 386 (565)
Q Consensus 307 ~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 386 (565)
|.++.... .+++|+.|++++|+++.+|... .+|++|++++|.++ .+|. .+++|+.|++++|.++.++
T Consensus 111 N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~l--~~L~~L~Ls~N~l~-~l~~-----~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 111 NPLTHLPA-----LPSGLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQLA-SLPA-----LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CCCCCCCC-----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSCCSCCC
T ss_pred CcCCCCCC-----CCCCcCEEECCCCCCCcCCCCC--CCCCEEECcCCcCC-CcCC-----ccCCCCEEECCCCCCCCCc
Confidence 66654222 3566777777777777666532 46777777777776 3442 2466777777777777766
Q ss_pred CCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 387 QIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 387 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
..+++|+.|++++|.+.+ +|..+++|+.|++++|.++... . .. ++|++|++++|.++.+|
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~-~---~~--------------~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLP-A---LP--------------SGLKELIVSGNRLTSLP 237 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC-C---CC--------------TTCCEEECCSSCCSCCC
T ss_pred -ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccC-C---CC--------------CCCCEEEccCCccCcCC
Confidence 556778888888877764 4455677888888888776321 1 11 67888888888888776
Q ss_pred ccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC
Q 037786 467 QISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 467 ~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~ 537 (565)
..+++|+.|++++|.++. +|..+++|+.|++++|.++ .+|..+..+++|+.|+|++|++.+..|..+.
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred -CCCCcCcEEECCCCCCCc-CCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 456788888888888775 5557788888888888887 5677788888888888888888766665543
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.4e-25 Score=210.65 Aligned_cols=224 Identities=21% Similarity=0.207 Sum_probs=193.7
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l 90 (565)
-++++.+++.+..++. ..++++++|++++|.++...+..+..+++|++|++++| .+.+..+ .+..+++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CeEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeC
Confidence 3688999988887643 24589999999999999877788999999999999998 5555533 4455599999999
Q ss_pred cCCc-cCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc
Q 037786 91 SGTR-FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 91 ~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
++|. +....+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 9997 776668889999999999999999988888889999999999999999987766778899999999999999987
Q ss_pred cCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 170 QFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 170 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
..+. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 7765 8889999999999999998888889999999999999999987777778899999999999998874
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.4e-28 Score=254.75 Aligned_cols=394 Identities=12% Similarity=0.078 Sum_probs=186.3
Q ss_pred CCCcEEEccCCccCccCCcccc-CCCCCCEEEcccc-cCccc-CchhccCCCCCCeeeccCCcccccCCcCc----cCCC
Q 037786 83 SPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQC-NFYGF-LPASLGNVTQLAVLSLSFKSFSGHIPPSL----SNLH 155 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~ 155 (565)
++|++|++++|.+++..+..+. .+++|++|++++| .++.. .+..+.++++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5666666666666544444443 4666677776666 33322 22223356666666666666553332222 2455
Q ss_pred CCCEEEccCcc--ccc-cCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccc-------ccCCCchhhcC
Q 037786 156 QLTDVDLGSNS--FDG-QFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT-------LSGTIPSWLFT 224 (565)
Q Consensus 156 ~L~~L~l~~~~--~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~~l~~ 224 (565)
+|+.|++++|. +.. .... ...+++|+.|++++|......+..+..+++|+.|++..+. +. ..+..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhc
Confidence 66666666654 110 0011 2334556666665552111233334445555555544332 11 11123344
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEc
Q 037786 225 LPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALEL 304 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 304 (565)
+++|+.+. .+.+... ..++..+..+++|++|++++|.+........+..+++|++|++
T Consensus 264 ~~~L~~Ls---------------------~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 264 CKELRCLS---------------------GFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp CTTCCEEE---------------------CCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred CCCccccc---------------------CCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC
Confidence 45554441 1111111 1222233344555555555555432222222345555555555
Q ss_pred cCCccccccCCcccCCCCCccEEEcCCC---------CCC--CCCchhh-ccccceEeccCCcCcccCChhhhhhCCCCc
Q 037786 305 SHNSLSFGTTSKVNSSFPQIFILSLSAC---------NIS--AFPSFLR-SLELAYLDLSENNIDGQIPNWMWEVGKDTL 372 (565)
Q Consensus 305 ~~~~i~~~~~~~~~~~~~~L~~L~l~~~---------~l~--~l~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 372 (565)
++| +.......+...+++|++|++.+| .++ .+..... ..+|+.|.+..+.+++.....+.. .+++|
T Consensus 322 ~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L 399 (594)
T 2p1m_B 322 LDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNM 399 (594)
T ss_dssp EGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTC
T ss_pred cCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCc
Confidence 555 332222222233455555555221 222 1111111 225555555555554333222221 23455
Q ss_pred cEEEcC--C----CccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhh-cCCCCCCcccc
Q 037786 373 SFLDLS--H----NFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICS-SSTLEIPSWIS 445 (565)
Q Consensus 373 ~~L~ls--~----n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~~~~~ 445 (565)
+.|+++ + +.++..+.. ..+. .....+++|++|++++ .+++..+..+.. +
T Consensus 400 ~~L~L~~~~~~~~~~l~~~~~~------------~~~~-~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~---------- 455 (594)
T 2p1m_B 400 TRFRLCIIEPKAPDYLTLEPLD------------IGFG-AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA---------- 455 (594)
T ss_dssp CEEEEEESSTTCCCTTTCCCTH------------HHHH-HHHHHCTTCCEEECCS-SCCHHHHHHHHHHC----------
T ss_pred ceeEeecccCCCcccccCCchh------------hHHH-HHHhhCCCccEEeecC-cccHHHHHHHHHhc----------
Confidence 555554 1 222211100 0000 0011256677777765 566555555554 4
Q ss_pred ccCCCCCcEEeCcCCCCCCC-cc---cCCCcccEEECCCCcccccC----CCCCCCCcEeeccCceeeeccchhh-hcCC
Q 037786 446 EIGKDSLSYLNLSHNFITKM-KQ---ISWKNLGYLDLRSNLLQGPL----LVPPSSLRVILILNNQFTGEIIHSI-CDII 516 (565)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~ 516 (565)
++|++|++++|.+++. .. ..+++|+.|++++|.+++.. ...+++|++|++++|+++......+ ..++
T Consensus 456 ----~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp 531 (594)
T 2p1m_B 456 ----KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531 (594)
T ss_dssp ----TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred ----hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence 6777777777776555 21 44677777777777764321 1246778888888887765555545 5667
Q ss_pred CCCEEeCCCCcCc
Q 037786 517 ALDVLDLSNNRLS 529 (565)
Q Consensus 517 ~L~~L~l~~n~~~ 529 (565)
+|+...+..+...
T Consensus 532 ~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 532 KLNVEVIDERGAP 544 (594)
T ss_dssp TEEEEEECSSSCG
T ss_pred CCEEEEecCCCcc
Confidence 7777777666543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=5.6e-25 Score=215.99 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=168.6
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELH 113 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (565)
+.....+.+++.++ .+|..+. ++|++|++++| .+.+..+ .+...++|++|++++|.+++..+..|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 33444666666665 3444333 36666666666 3443333 233346666666666776666666677777888888
Q ss_pred cccccCcccCchhccCCCCCCeeeccCCcccccCC-cCccCCCCCCEEEccCcc-ccccCcC-CcCCCCCCEEeccCCcc
Q 037786 114 LSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIP-PSLSNLHQLTDVDLGSNS-FDGQFPD-IMNLTRISRLDISNNQL 190 (565)
Q Consensus 114 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~ 190 (565)
+++|.++...+..|.++++|++|++++|.+....+ ..+..+++|++|++++|. +....+. +..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 88777776666667777788888888777774333 367777788888887773 5544443 77777788888888877
Q ss_pred cccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-----CCCCCcEEEccCCccccCCc
Q 037786 191 TGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-----PSKSLRKLYLTNNRLHGSIP 265 (565)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~ 265 (565)
.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..... ....++.++++++.+.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~--- 263 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD--- 263 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH---
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC---
Confidence 7777777777788888888887775433334455777777777777776432211 12233333333333322
Q ss_pred hhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC
Q 037786 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335 (565)
Q Consensus 266 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 335 (565)
+.+.. + +..+..+++|++|++++|.++. .+..++..+++|+.|++++|++.
T Consensus 264 ----------------~~l~~-l-~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 264 ----------------ESLFQ-V-MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----------------HHHHH-H-HHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------------cchhh-h-HHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCcc
Confidence 11111 1 2345666667777777776662 23333356667777777777665
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-24 Score=208.92 Aligned_cols=244 Identities=22% Similarity=0.179 Sum_probs=191.3
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCcc---CCCCCCCCCCcEEE
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGV---FPRSNWTSPLRCLD 89 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~L~~L~ 89 (565)
+.++++++.+..++. ..++++++|++++|.++...+..+.++++|++|++++| .+... .......++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCC----CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE
Confidence 578888888876654 23478999999999998655566889999999999988 44322 23333458899999
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
+++|.++ .+|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 9999887 566778889999999999988876654 57888899999999999888777788888899999999998887
Q ss_pred c--cCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-
Q 037786 169 G--QFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF- 245 (565)
Q Consensus 169 ~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~- 245 (565)
+ .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 3444888888999999998888777888888888999999998888666667788888888888888887654432
Q ss_pred -CC-CCCcEEEccCCcccc
Q 037786 246 -PS-KSLRKLYLTNNRLHG 262 (565)
Q Consensus 246 -~~-~~L~~L~l~~~~~~~ 262 (565)
.. ++|++|++++|.+++
T Consensus 244 ~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCCTTCCEEECTTCCEEC
T ss_pred HhhhccCCEEEccCCCeec
Confidence 22 467777777777664
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.3e-25 Score=212.50 Aligned_cols=216 Identities=18% Similarity=0.210 Sum_probs=158.1
Q ss_pred CCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEE
Q 037786 297 VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFL 375 (565)
Q Consensus 297 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 375 (565)
+.++.|++++|.++ ..+..+ ..+++|++|++++|.++.+|..+... +|++|++++|.++ .+|..+.
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~---------- 147 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIA---------- 147 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGG----------
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHh----------
Confidence 45556666665554 222222 33555555555555555555433332 5555555555555 4444433
Q ss_pred EcCCCccCCccCCCCCCCCeEEcCCCcccccCCC------------CCCCCcEEEccccccCccchhhhhhcCCCCCCcc
Q 037786 376 DLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV------------PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSW 443 (565)
Q Consensus 376 ~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~------------~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~ 443 (565)
.+++|++|++++|.+.+..|. .+++|++|++++|+++ .+|..+..+
T Consensus 148 -------------~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-------- 205 (328)
T 4fcg_A 148 -------------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-------- 205 (328)
T ss_dssp -------------GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC--------
T ss_pred -------------cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC--------
Confidence 334444555544444443333 2789999999999998 677778888
Q ss_pred ccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCC
Q 037786 444 ISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIAL 518 (565)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 518 (565)
++|++|++++|.+..+|. ..+++|+.|++++|.+.+.+|. .+++|++|++++|.+.+.+|..+..+++|
T Consensus 206 ------~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 206 ------QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp ------TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred ------CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 999999999999999854 7889999999999999887765 78999999999999999999999999999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 519 DVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 519 ~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
++|+|++|++.+.+|++++++++|+.+.+...+..
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999998765443
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.1e-24 Score=220.50 Aligned_cols=261 Identities=23% Similarity=0.227 Sum_probs=221.2
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEE
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL 327 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 327 (565)
..++.++++++.++ .+|..+. ++|+.|++++|.+... +. .+++|++|++++|.++.... .+++|+.|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA----LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC----CCTTCCEEEECSCCCSCCCC-----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC----cCCCCCEEEcCCCcCCcCCC-----CCCCCCEE
Confidence 35899999999998 6666554 7999999999999843 32 57899999999999874322 67899999
Q ss_pred EcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccC
Q 037786 328 SLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL 407 (565)
Q Consensus 328 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~ 407 (565)
++++|.++.+|. ...+|+.|++++|+++ .+|. .+++|+.|++++|.++.++. .+++|+.|++++|.+.. +
T Consensus 107 ~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 107 SIFSNPLTHLPA--LPSGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp EECSCCCCCCCC--CCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-C
T ss_pred ECcCCcCCCCCC--CCCCcCEEECCCCCCC-cCCC-----CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCC-C
Confidence 999999999887 3348999999999998 4664 34899999999999998765 56899999999999986 5
Q ss_pred CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccC
Q 037786 408 PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPL 487 (565)
Q Consensus 408 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~ 487 (565)
|..+++|++|++++|++++. +. .. ++|+.|++++|.+..+|. .+++|+.|++++|.+++ +
T Consensus 177 ~~~~~~L~~L~Ls~N~l~~l-~~---~~--------------~~L~~L~L~~N~l~~l~~-~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQLASL-PT---LP--------------SELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCC-CC---CC--------------TTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSC-C
T ss_pred cccCCCCcEEECCCCCCCCC-CC---cc--------------chhhEEECcCCcccccCC-CCCCCCEEEccCCccCc-C
Confidence 57799999999999999852 21 12 799999999999999874 46899999999999987 6
Q ss_pred CCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccccc
Q 037786 488 LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATTL 556 (565)
Q Consensus 488 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~~ 556 (565)
+..+++|+.|++++|.++. +|. .+++|+.|+|++|.+. .+|+.++.+++|+.|++.+..+.+..
T Consensus 237 p~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 237 PVLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 6788999999999999984 444 6789999999999999 89999999999999999987765443
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=3.3e-25 Score=213.20 Aligned_cols=230 Identities=21% Similarity=0.251 Sum_probs=202.4
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCccccc--CCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGE--FPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRC 87 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 87 (565)
+++++|++++|.+..+....|..+ ++|++|++++|.++.. .+..+..+++|++|++++| ........+...++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 589999999999998887778888 9999999999998743 2567778999999999999 55555455566799999
Q ss_pred EEccCCccCccCC-ccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCc
Q 037786 88 LDVSGTRFSGQLP-DSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 88 L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 165 (565)
|++++|.+++..+ ..+..+++|++|++++|.+....+..+.++++|++|++++|.+.+ ..|..+..+++|+.|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999985544 578999999999999999998888899999999999999999986 57889999999999999999
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCC-CCCEEEccCCccccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP-LLRDIDLSDNQLTGH 241 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~ 241 (565)
.+....+. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++...
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99887554 88999999999999999977777788999999999999999988888888884 999999999998753
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6.3e-28 Score=254.82 Aligned_cols=407 Identities=12% Similarity=0.105 Sum_probs=168.9
Q ss_pred HHHhhCCCCCcEEEcCCCc-CCCCC-------------chhhhhcCCCccEEEccCCcccccCCcccc-CCCCCCEEecC
Q 037786 3 EALVQNVTKLQLLFLDYVD-MSTVV-------------PGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLK 67 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~-~~~~~-------------~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~L~ 67 (565)
..++.++++|++|+++++. +.+.. ...+....++|++|++++|.+++..+..+. .+++|++|+++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 3456667777777777654 11111 011121226667777776666654444443 46666666666
Q ss_pred CCCCCCcc-CCCCC-CCCCCcEEEccCCccCccCCccc----cCCCCCCEEEccccc--Cccc-CchhccCCCCCCeeec
Q 037786 68 FNSNLSGV-FPRSN-WTSPLRCLDVSGTRFSGQLPDSI----CNLRHLRELHLSQCN--FYGF-LPASLGNVTQLAVLSL 138 (565)
Q Consensus 68 ~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~L~~~~--~~~~-~~~~~~~l~~L~~L~l 138 (565)
+|...... ++... .+++|++|++++|.+++..+..+ ..+++|++|++++|. +... ....+..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 65221110 11111 23555555555555443222222 234455555555543 1111 1111123455555555
Q ss_pred cCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEE-EcccccccCC
Q 037786 139 SFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVL-RLYNNTLSGT 217 (565)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~l~~~ 217 (565)
++|.....++..+..+++|+.|+++++... +..+.+.+ .+..+..+++|+.+ .+.+... ..
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~----------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~ 280 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAE----------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AY 280 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCC----------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GG
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCc----------------cchhhHHH-HHHHHhcCCCcccccCCcccch-hh
Confidence 554211123334444555555554333210 01111111 11133444555554 2222111 12
Q ss_pred CchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCccccC-CchhhhcCCCcCcccccc---------ccc
Q 037786 218 IPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRLHGS-IPSSIFELANLTYLSLAS---------NNF 284 (565)
Q Consensus 218 ~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------n~~ 284 (565)
.+..+..+++|+.|++++|.+.+.... ..+++|++|++.+| +.+. .......+++|++|++.+ +.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 222333445555555555553321100 13344555555544 2211 111222355566655522 223
Q ss_pred cCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcC--C----CCCCCCCc------hhhc-cccceEec
Q 037786 285 SGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS--A----CNISAFPS------FLRS-LELAYLDL 351 (565)
Q Consensus 285 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~--~----~~l~~l~~------~~~~-~~L~~L~l 351 (565)
++.........+++|+.|.+..+.++......+...+++|+.|+++ + +.++..+. .+.. .+|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 2221111223356666666555555544433333345566666665 2 23332211 1111 25555555
Q ss_pred cCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCC----CCCCCCcEEEccccc
Q 037786 352 SENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQ 423 (565)
Q Consensus 352 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~n~ 423 (565)
++ .+++.....+.. .+++|+.|++++|.+++... ..+++|++|++++|++++... ..+++|++|++++|+
T Consensus 440 ~~-~l~~~~~~~l~~-~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGT-YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CS-SCCHHHHHHHHH-HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cC-cccHHHHHHHHH-hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 44 343333222222 23455555555555433322 124455555555554432111 124455555555555
Q ss_pred cCccchh
Q 037786 424 FTGEIIQ 430 (565)
Q Consensus 424 i~~~~~~ 430 (565)
++....+
T Consensus 518 ~~~~~~~ 524 (594)
T 2p1m_B 518 VSFGACK 524 (594)
T ss_dssp CBHHHHH
T ss_pred CCHHHHH
Confidence 5433333
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=4e-24 Score=206.85 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=130.7
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEE
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCL 88 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 88 (565)
.++++.|++++|.+..+ +..+..+ ++|++|++++|.++ .+|..+..+++|++|++++| .+......+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSC-CSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhc-ChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEE
Confidence 45666667766666643 3345555 66666777666666 56666666666666666666 343332233334666666
Q ss_pred EccCCccCccCCccccC---------CCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCE
Q 037786 89 DVSGTRFSGQLPDSICN---------LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTD 159 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~---------l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (565)
++++|.+.+.+|..+.. +++|++|++++|.++ ..|..+.++++|++|++++|.+. .+|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 66666555555554433 566666666666655 44555666666666666666655 24445556666666
Q ss_pred EEccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcc
Q 037786 160 VDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQL 238 (565)
Q Consensus 160 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 238 (565)
|++++|.+.+..+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++++.+.+..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 66666555444433 55566666666666655555555566666666666666665555666666666666665554433
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6e-26 Score=219.07 Aligned_cols=248 Identities=24% Similarity=0.206 Sum_probs=134.4
Q ss_pred EEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCC
Q 037786 253 LYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSAC 332 (565)
Q Consensus 253 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 332 (565)
.+++.+.+.......+..+++|++|++++|.+... .+..+..+++|++|++++|.++.... +..+++|+.|++++|
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSS
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCC
Confidence 34444444433333344456777777777777643 44566777777777777776654332 355566666666666
Q ss_pred CCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC--
Q 037786 333 NISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP-- 410 (565)
Q Consensus 333 ~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~-- 410 (565)
.++.++.. .+|++|++++|.+ +.++...+++|++|++++|++.+..+..
T Consensus 91 ~l~~l~~~---~~L~~L~l~~n~l--------------------------~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 91 YVQELLVG---PSIETLHAANNNI--------------------------SRVSCSRGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp EEEEEEEC---TTCCEEECCSSCC--------------------------SEEEECCCSSCEEEECCSSCCCSGGGBCTG
T ss_pred ccccccCC---CCcCEEECCCCcc--------------------------CCcCccccCCCCEEECCCCCCCCccchhhh
Confidence 65543321 2445555555544 4444444445555555555554432221
Q ss_pred -CCCCcEEEccccccCccchhhhh-hcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccC
Q 037786 411 -PPRLQFLLASNNQFTGEIIQSIC-SSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPL 487 (565)
Q Consensus 411 -~~~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~ 487 (565)
+++|++|++++|++++..+..+. .+ ++|++|++++|.++.++ ...+++|+.|++++|.+++..
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l--------------~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASS--------------DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGT--------------TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhcc--------------CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcch
Confidence 45556666666655554444442 33 56666666666666553 244556666666666655422
Q ss_pred CC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCc-ccCCCCCCCCCCCcccccC
Q 037786 488 LV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS-GTIPKCIGNFSPWCQTKWP 548 (565)
Q Consensus 488 ~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~l~~~ 548 (565)
+. .+++|+.|++++|.++. +|..+..+++|+.|++++|++. ..+|+.++.+++|+.+++.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 22 45666666666666653 3445566666666666666666 3455555555555555443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.7e-23 Score=212.49 Aligned_cols=246 Identities=20% Similarity=0.180 Sum_probs=169.8
Q ss_pred CcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
...++.++..++ .+|..+. +++++|++++|.++...+..|.++++|+.|++++|.+.+..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666666 4554442 5677777777777777777777777777777777777766667777777777777777
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccc-cccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN-TLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
|.+....+. +..+++|+.|++++|.+....+..+..+++|+.|+++++ .+....+..+..+++|+.|++++|.+.+..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 777766555 667777777777777777666667777777888888774 344334446777778888888888777655
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.....++|++|++++|.+++..+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.++..... .+..++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 290 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLR 290 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCTT-SSTTCT
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEECCCCcCCccChH-Hhcccc
Confidence 445667777777777777766667777777777777777777643 335567777777777777777643332 335566
Q ss_pred CccEEEcCCCCCC
Q 037786 323 QIFILSLSACNIS 335 (565)
Q Consensus 323 ~L~~L~l~~~~l~ 335 (565)
+|+.|++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 7777777776543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.7e-23 Score=211.64 Aligned_cols=245 Identities=20% Similarity=0.198 Sum_probs=146.3
Q ss_pred CcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
.+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+....+.+|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555555 4444332 4566666666666655556666666666666666666655555666666666666666
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccc-cccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN-TLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
|.+....+. +..+++|+.|++++|.+....+..|..+++|++|+++++ .+....+..|..+++|+.|++++|.+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 666555443 566666666666666666555556666666666666663 333233345666666677777666666544
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.....++|++|++++|.+++..+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.++..... .+..++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 279 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLH 279 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEEECTTSCCCCCCTT-TTSSCT
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEEECCCCCCCccChh-Hhcccc
Confidence 444556666666666666655556666666666666666666533 334556666666666666666543322 225556
Q ss_pred CccEEEcCCCCC
Q 037786 323 QIFILSLSACNI 334 (565)
Q Consensus 323 ~L~~L~l~~~~l 334 (565)
+|+.|++++|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 666666666654
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=3.4e-24 Score=210.38 Aligned_cols=279 Identities=16% Similarity=0.128 Sum_probs=167.5
Q ss_pred CCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeee
Q 037786 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLS 137 (565)
Q Consensus 58 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 137 (565)
|+.....+.+++ .+....... .++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|+
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCC-Ccccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444445555554 333222211 14666666666666654444566666666666666666665566666666666666
Q ss_pred ccCCcccccCCcCccCCCCCCEEEccCccccccCc--CCcCCCCCCEEeccCC-cccccCCCCCcCCCCCCEEEcccccc
Q 037786 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP--DIMNLTRISRLDISNN-QLTGSIPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l 214 (565)
+++|.+++..+..+..+++|++|++++|.+..... .+..+++|+.|++++| .+....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666664333346666666666666666655444 2556666666666665 34444455555666666666666665
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccCh--Hh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP--YM 292 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~ 292 (565)
.+..+..+..+++|++|++++| .++......+..+++|+.|++++|.+.+.... ..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n----------------------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMK----------------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECS----------------------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred CccCHHHHhccccCCeecCCCC----------------------ccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 5444455555555555555554 44322222233466677777777666543211 11
Q ss_pred hhcCCCCCEEEccCCccccccCC---cccCCCCCccEEEcCCCCCCCCCchh-h-ccccceEeccCCcCcccCC
Q 037786 293 LAKLVNLAALELSHNSLSFGTTS---KVNSSFPQIFILSLSACNISAFPSFL-R-SLELAYLDLSENNIDGQIP 361 (565)
Q Consensus 293 l~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~~L~~L~l~~~~l~~l~~~~-~-~~~L~~L~l~~n~l~~~~~ 361 (565)
......++.++++++.+.+.... .....+++|+.|++++|+++.+|..+ . ..+|++|++++|++....+
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 23456788888888877643221 22367899999999999999998764 3 3399999999999986554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.2e-23 Score=211.66 Aligned_cols=246 Identities=20% Similarity=0.221 Sum_probs=212.6
Q ss_pred CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEE
Q 037786 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLD 89 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~ 89 (565)
..+.++.++..+..++. .+++++++|++++|.++...+..|.++++|++|++++| .+.+..+ .+..+++|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ----GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCccCC----CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEE
Confidence 35688888888876643 34588999999999999888899999999999999999 5555543 445569999999
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC-cccccCCcCccCCCCCCEEEccCcccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK-SFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
+++|.++...+..|..+++|++|++++|.+....+..|.++++|+.|+++++ .+....+..+..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 9999999777777999999999999999999888888999999999999985 455445557899999999999999998
Q ss_pred ccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--C
Q 037786 169 GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--P 246 (565)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~ 246 (565)
.. +.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....... .
T Consensus 210 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 210 DM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp SC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred cc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 54 56889999999999999999888889999999999999999998888888999999999999999998665543 5
Q ss_pred CCCCcEEEccCCcccc
Q 037786 247 SKSLRKLYLTNNRLHG 262 (565)
Q Consensus 247 ~~~L~~L~l~~~~~~~ 262 (565)
.++|+.|++++|.+.+
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 7899999999998764
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=8.7e-24 Score=200.93 Aligned_cols=203 Identities=24% Similarity=0.255 Sum_probs=109.3
Q ss_pred CCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc-ccccCcC-CcCCCCCCEEe
Q 037786 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS-FDGQFPD-IMNLTRISRLD 184 (565)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~ 184 (565)
++|++|++++|.++...+..|..+++|++|++++|.+++..+.++..+++|++|++++|. +....+. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554444455555555555555554 3333222 44555555555
Q ss_pred ccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCcccc
Q 037786 185 ISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~ 262 (565)
+++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...... ...++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 555555544444455555555555555555544444455555555555555555543332 134555555555555555
Q ss_pred CCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccc
Q 037786 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310 (565)
Q Consensus 263 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 310 (565)
..+..+..+++|+.|++++|.+.+ +++..+..+++|+.|++++|++.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 555566666667777777766654 34445666666777777666654
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.6e-23 Score=210.35 Aligned_cols=246 Identities=20% Similarity=0.230 Sum_probs=209.8
Q ss_pred CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccC-CCCCCCCCCcEEE
Q 037786 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVF-PRSNWTSPLRCLD 89 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~ 89 (565)
..+.++.++..+..++. .+++++++|++++|+++...+..|.++++|++|++++| .+.... ..+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD----GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSSCCS----CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCcCCC----CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEE
Confidence 35688888888876653 33578999999999999888889999999999999999 555444 3445569999999
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC-cccccCCcCccCCCCCCEEEccCcccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK-SFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
+++|.++...+..|..+++|++|++++|.+....+..|.++++|+.|+++++ .+....+..|.++++|+.|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 9999999766678999999999999999999888888999999999999985 455455557899999999999999988
Q ss_pred ccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--C
Q 037786 169 GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--P 246 (565)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~ 246 (565)
.. +.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|++....... .
T Consensus 199 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred cc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 44 56888999999999999999888899999999999999999998888888999999999999999998766543 5
Q ss_pred CCCCcEEEccCCcccc
Q 037786 247 SKSLRKLYLTNNRLHG 262 (565)
Q Consensus 247 ~~~L~~L~l~~~~~~~ 262 (565)
.++|+.|++++|.+.+
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 6899999999998764
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=2.8e-24 Score=207.32 Aligned_cols=236 Identities=16% Similarity=0.102 Sum_probs=149.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++|++|++++|.+++..+..+..+++|++|++++| .+.+..+ +..+++|++|++++|.+++. + ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccc-c----CCCCcCEEEC
Confidence 55666666666666544555666666666666665 3333222 33446666666666665532 1 2366677777
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-C-cCCCCCCEEeccCCcccc
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-I-MNLTRISRLDISNNQLTG 192 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~ 192 (565)
++|.+....+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+....+. + ..+++|+.|++++|.+++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 776665544332 45667777777776655555666667777777777766654433 3 356677777777777664
Q ss_pred cCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccc-cCCchhhhc
Q 037786 193 SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLH-GSIPSSIFE 270 (565)
Q Consensus 193 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~ 270 (565)
... ...+++|++|++++|.+... +..+..+++|+.|++++|.+....... ..++|+.|++++|.+. +..+.++..
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 184 VKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred ccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 422 22367777777777777643 334667777777777777777544433 5577888888888877 566778888
Q ss_pred CCCcCcccccccc
Q 037786 271 LANLTYLSLASNN 283 (565)
Q Consensus 271 ~~~L~~L~l~~n~ 283 (565)
+++|+.++++++.
T Consensus 261 ~~~L~~l~l~~~~ 273 (317)
T 3o53_A 261 NQRVQTVAKQTVK 273 (317)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cccceEEECCCch
Confidence 8999999998654
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3e-24 Score=219.03 Aligned_cols=227 Identities=25% Similarity=0.225 Sum_probs=149.6
Q ss_pred CcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEecc
Q 037786 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352 (565)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~ 352 (565)
+|+.|++++|.+... ++..+..+++|+.|++++|.++...+ +..+++|+.|++++|.++.++.
T Consensus 35 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~------------- 97 (487)
T 3oja_A 35 NVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV------------- 97 (487)
T ss_dssp GCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-------------
T ss_pred CccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-------------
Confidence 566666666666543 33445566666666666665543322 2444455555555554433221
Q ss_pred CCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccch
Q 037786 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEII 429 (565)
Q Consensus 353 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~ 429 (565)
.++|+.|++++|.++.+++..+++|+.|++++|.+.+..+.. +++|++|++++|.+++..+
T Consensus 98 ----------------~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 98 ----------------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp ----------------CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred ----------------CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 255666666666666666666667777777777776654432 6778888888888887777
Q ss_pred hhhh-hcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceee
Q 037786 430 QSIC-SSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFT 505 (565)
Q Consensus 430 ~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~ 505 (565)
..+. .+ ++|++|++++|.+++.+ ...+++|+.|++++|.+++..+. .+++|+.|++++|.++
T Consensus 162 ~~l~~~l--------------~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 162 AELAASS--------------DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp GGGGGGT--------------TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred HHHhhhC--------------CcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 6665 55 78888888888888773 36677888888888888764333 6778888888888887
Q ss_pred eccchhhhcCCCCCEEeCCCCcCc-ccCCCCCCCCCCCccccc
Q 037786 506 GEIIHSICDIIALDVLDLSNNRLS-GTIPKCIGNFSPWCQTKW 547 (565)
Q Consensus 506 ~~~~~~l~~~~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~l~~ 547 (565)
+ +|..+..+++|+.|++++|++. +.+|..++.++.|..+..
T Consensus 228 ~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 228 L-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp E-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred c-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 5 5666778888888888888887 356666777777766655
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5.5e-24 Score=204.80 Aligned_cols=201 Identities=23% Similarity=0.235 Sum_probs=127.8
Q ss_pred CCCCcEEEccCCccCccCCccc--cCCCCCCEEEcccccCcccCchhccCC-----CCCCeeeccCCcccccCCcCccCC
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSI--CNLRHLRELHLSQCNFYGFLPASLGNV-----TQLAVLSLSFKSFSGHIPPSLSNL 154 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l 154 (565)
.++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3455556666666665555554 5666666666666666655 5555555 667777777776665555666666
Q ss_pred CCCCEEEccCcccccc---CcC--CcCCCCCCEEeccCCcccc---cCCCCCcCCCCCCEEEcccccccCCCc-hhhcCC
Q 037786 155 HQLTDVDLGSNSFDGQ---FPD--IMNLTRISRLDISNNQLTG---SIPSHGSGLQNLAVLRLYNNTLSGTIP-SWLFTL 225 (565)
Q Consensus 155 ~~L~~L~l~~~~~~~~---~~~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~ 225 (565)
++|++|++++|.+.+. +.. +..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 7777777776665432 112 2566777777777776652 112233456677777777777765442 344556
Q ss_pred CCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccC
Q 037786 226 PLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG 286 (565)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 286 (565)
++|+.|++++|.+...+.... ++|++|++++|.+++. |. +..+++|+.|++++|.+.+
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777777774433334 7788888888888754 54 7778888888888888764
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=1.8e-24 Score=208.16 Aligned_cols=246 Identities=21% Similarity=0.210 Sum_probs=187.1
Q ss_pred ccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccC-ccCCcccc-------CCCCCCEEEcccccCcccCchh
Q 037786 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFS-GQLPDSIC-------NLRHLRELHLSQCNFYGFLPAS 126 (565)
Q Consensus 55 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~ 126 (565)
+...++|++|++++| .. ..+.... ..|++|++++|.+. ..++..+. ++++|++|++++|.+++..|..
T Consensus 39 ~~~~~~L~~l~l~~n-~l--~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVD-TE--ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCC-TT--CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccc-cc--ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 445567777777777 33 2221111 23777788888773 34555554 7899999999999998777776
Q ss_pred c--cCCCCCCeeeccCCcccccCCcCccCC-----CCCCEEEccCccccccCcC-CcCCCCCCEEeccCCccccc--CCC
Q 037786 127 L--GNVTQLAVLSLSFKSFSGHIPPSLSNL-----HQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGS--IPS 196 (565)
Q Consensus 127 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~ 196 (565)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+....+. ++.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8899999999999999866 7777666 8999999999999877754 88999999999999987643 122
Q ss_pred --CCcCCCCCCEEEcccccccCC---CchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCccccCCchhh
Q 037786 197 --HGSGLQNLAVLRLYNNTLSGT---IPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRLHGSIPSSI 268 (565)
Q Consensus 197 --~~~~~~~L~~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~ 268 (565)
.+..+++|++|++++|.+... ....+..+++|+.|++++|.+.+..+. ...++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 237789999999999988732 223456788999999999999875522 24688999999999998 666666
Q ss_pred hcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcccc
Q 037786 269 FELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 269 ~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 311 (565)
. ++|+.|++++|++.+. + . +..+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p-~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-P-S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-C-C-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-h-h-HhhCCCCCEEeccCCCCCC
Confidence 5 7899999999999865 3 3 7888999999999998864
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.6e-22 Score=204.75 Aligned_cols=233 Identities=17% Similarity=0.117 Sum_probs=129.1
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
+|++|++++|.+++..|..|..+++|++|++++| .+.+..+ +..+++|++|++++|.+++. + ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 4555555555555444455555555555555555 3333222 33335555555555555422 1 12556666666
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-Cc-CCCCCCEEeccCCccccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IM-NLTRISRLDISNNQLTGS 193 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~ 193 (565)
+|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+. +. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6655544332 235556666666666555555555566666666666665543332 32 456666666666665544
Q ss_pred CCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccc-cCCchhhhcC
Q 037786 194 IPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLH-GSIPSSIFEL 271 (565)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~ 271 (565)
.+ ...+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+... ..++|+.|++++|.+. +..+.++..+
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 22 2235666666666666654322 3556666666666666666544333 4466777777777766 3455667777
Q ss_pred CCcCcccccc
Q 037786 272 ANLTYLSLAS 281 (565)
Q Consensus 272 ~~L~~L~l~~ 281 (565)
+.++.+++..
T Consensus 262 ~~L~~l~~~~ 271 (487)
T 3oja_A 262 QRVQTVAKQT 271 (487)
T ss_dssp HHHHHHHHHH
T ss_pred CCCcEEeccc
Confidence 7777777753
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.5e-21 Score=184.43 Aligned_cols=222 Identities=21% Similarity=0.220 Sum_probs=182.3
Q ss_pred EEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccC
Q 037786 14 LLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSG 92 (565)
Q Consensus 14 ~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~ 92 (565)
.++..+..+..++. .+|+++++|++++|.+++..+..+..+++|++|++++| .+....+ .+...++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~----~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCS----SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccccCC----CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCC
Confidence 45666666654432 34578999999999999777778999999999999998 5555444 345559999999999
Q ss_pred CccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCccccc-CCcCccCCCCCCEEEccCccccccC
Q 037786 93 TRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGH-IPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
|.+++..+..|.++++|++|++++|.+....+..+.++++|++|++++|.+.+. +|..+..+++|+.|++++|.+....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 999877778899999999999999999887777899999999999999999863 5889999999999999999998765
Q ss_pred cC-CcCCCCCC----EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccccc
Q 037786 172 PD-IMNLTRIS----RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 172 ~~-~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
+. +..+++|+ .+++++|.+.+..+..+. ..+|+.|++++|.+....+..+..+++|+.|++++|++...
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 54 55555555 899999999866655554 45899999999999877677788999999999999998853
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=5.1e-21 Score=180.89 Aligned_cols=202 Identities=20% Similarity=0.207 Sum_probs=119.1
Q ss_pred CCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeee
Q 037786 59 SNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLS 137 (565)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 137 (565)
++|++|++++| .+.+..+ .+...++|++|++++|.++...+..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35666666666 4444333 333346666666666666655555666666666666666666666556666666666666
Q ss_pred ccCCcccccCCcCccCCCCCCEEEccCcccccc--CcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCC----EEEccc
Q 037786 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ--FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLA----VLRLYN 211 (565)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 211 (565)
+++|.+....+..+..+++|++|++++|.+... +..+..+++|+.|++++|++++..+..+..+++++ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 666666654444566666666666666666542 23366666666666666666655444555444444 666666
Q ss_pred ccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCcccc
Q 037786 212 NTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 212 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~ 262 (565)
|.+....+..+. ..+|+.|++++|.+.+..... ..++|+.|++++|.+.+
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 666543333332 235666666666666544332 45566666666666653
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-20 Score=176.76 Aligned_cols=200 Identities=20% Similarity=0.246 Sum_probs=114.1
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEcc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (565)
.++++++++.++.++. .+++++++|++++|.++...+.+|..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------- 71 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPS----NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN---------------------- 71 (270)
T ss_dssp TTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS----------------------
T ss_pred CCEEEccCCCCCccCC----CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC----------------------
Confidence 4555666555554322 12345566666666555444445555555555555554
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++|.+....
T Consensus 72 --~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 72 --KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp --CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred --ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 444333334455556666666666555555555555666666666666655545555556666666666666655444
Q ss_pred cC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 172 PD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 172 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 44 555666666666666666555555666666666666666666544455666666666776666654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.2e-21 Score=185.72 Aligned_cols=195 Identities=22% Similarity=0.141 Sum_probs=157.1
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEE
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLK 397 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~ 397 (565)
..++++++++++++.++.+|..+. ..++.|++++|.+++..+..+. .+++|+.|++++|.++.++.. .+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 456778888888888887775443 3788888888888755454444 568899999999988887774 778899999
Q ss_pred cCCCcccccCC--CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc---cCCCc
Q 037786 398 LQSNLLQGPLP--VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKN 472 (565)
Q Consensus 398 l~~n~~~~~~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~ 472 (565)
+++|++..... ..+++|++|++++|++++..+..+..+ ++|++|++++|++..+|. ..+++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l--------------~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------------GELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC--------------TTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCC--------------CCCCEEECCCCCCCccChhhcccccC
Confidence 99998874322 237899999999999997777777777 899999999999998844 56789
Q ss_pred ccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCccc
Q 037786 473 LGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 473 L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 531 (565)
|+.|++++|++++..+. .+++|+.|++++|.++ .+|..+...++|+.|+|++|++.|.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 99999999999863332 6899999999999998 5677788889999999999999876
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=9.3e-21 Score=179.68 Aligned_cols=202 Identities=20% Similarity=0.172 Sum_probs=157.7
Q ss_pred hhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCC
Q 037786 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPL 85 (565)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L 85 (565)
+++++++++++++++.+..++.. +++++++|++++|.++...+..+..+++|++|++++| .+..... ....++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-CCCCCcC
Confidence 57889999999999999876542 3478999999999999888889999999999999998 4544333 3555888
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
++|++++|.++ .+|..+..+++|++|++++|.++...+..|.++++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888888887 66777788888888888888888777777888888888888888887666666777888888888888
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+....+. +..+++|+.|++++|++. .+|..+...++|+.+++++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 87766555 566777777777777777 45555556667777777777664
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.7e-20 Score=175.11 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=159.5
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
+.+++|++++|.++...+..|.++++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 46777777788887666678999999999999999999887778899999999999999999777778899999999999
Q ss_pred cCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccccc
Q 037786 163 GSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
++|.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99999877766 78999999999999999977777789999999999999999877777899999999999999999876
Q ss_pred CCCC--CCCCCcEEEccCCccccC
Q 037786 242 LDAF--PSKSLRKLYLTNNRLHGS 263 (565)
Q Consensus 242 ~~~~--~~~~L~~L~l~~~~~~~~ 263 (565)
.... ..++|+.|++++|.+...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 6542 568999999999987643
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.6e-20 Score=176.73 Aligned_cols=216 Identities=20% Similarity=0.222 Sum_probs=155.4
Q ss_pred EEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCC
Q 037786 14 LLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGT 93 (565)
Q Consensus 14 ~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 93 (565)
.+++..+.+.+. .....+ ++|++|+++++.++. ...+..+++|++|++++| .+.+ ++.+..+++|++|++++|
T Consensus 23 ~l~l~~~~~~~~--~~~~~l-~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNEL-NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGN-KLHD-ISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHH-TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTS-CCCC-CGGGTTCTTCCEEECTTS
T ss_pred HHHhcCcccccc--cccccc-cceeeeeeCCCCccc--ccccccCCCCcEEECCCC-CCCC-chhhcCCCCCCEEECCCC
Confidence 344555554443 234555 778888888877762 334777788888888877 4433 334445577888888888
Q ss_pred ccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC
Q 037786 94 RFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD 173 (565)
Q Consensus 94 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 173 (565)
.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+....+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 88766666677888888888888888777777778888888888888888766666677888888888888887766655
Q ss_pred -CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 174 -IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 174 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .++.++.+++..|.+.+..+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 6778888888888888887766667788888888888887653 35567777777777765544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=8.9e-21 Score=178.52 Aligned_cols=224 Identities=20% Similarity=0.214 Sum_probs=170.9
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEccc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQ 116 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 116 (565)
+..+++..+.+.+. .....+++|+.|+++++ ... .++....+++|++|++++|.+++ + ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~-~i~-~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNS-DIK-SVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTS-CCC-CCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCC-Ccc-cccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 45566666666532 34567889999999987 333 34445556889999999988875 2 4688888999999998
Q ss_pred ccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccCC
Q 037786 117 CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIP 195 (565)
Q Consensus 117 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 195 (565)
|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 888877777788888999999999988876667788888899999998888866665 6788888888888888887777
Q ss_pred CCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcC
Q 037786 196 SHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFEL 271 (565)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 271 (565)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++... ++.++.++++.|.+++.+|.++..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----CcHHHHHHHHHHhCCCcccCccccc
Confidence 7778888888888888888876667778888888888888876632 3456666666666666666555443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.3e-20 Score=175.36 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=134.6
Q ss_pred cCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccC
Q 037786 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSE 353 (565)
Q Consensus 274 L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 353 (565)
+....+..+.+.+... ...+++|++|++++|.+.... . ...+++|+.|++++|.+..++.+....+|++|++++
T Consensus 21 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l~--~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE--G-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCceec---HHHcCCcCEEEeeCCCccCch--h-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccC
Confidence 4445555655554332 456778899999988876532 2 366788888888888888777744444888888888
Q ss_pred CcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCccchhh
Q 037786 354 NNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQS 431 (565)
Q Consensus 354 n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~ 431 (565)
|.+++ ++ .+. .+++|+.|++++|.++.++.. .+++|++|++++|.+.+..+. .+++|++|++++|++++..+
T Consensus 95 n~l~~-~~-~~~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 95 NPLKN-VS-AIA--GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CCCSC-CG-GGT--TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred CcCCC-ch-hhc--CCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--
Confidence 88773 33 222 567788888888887776653 567777777777776654322 26667777777776664333
Q ss_pred hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccCCC-CCCCCcEeeccCceeee
Q 037786 432 ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTG 506 (565)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~ 506 (565)
+..+ ++|++|++++|.+++++ ...+++|+.|++++|.+++..+. .+++|+.|++++|+++.
T Consensus 169 l~~l--------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANL--------------SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTC--------------TTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred hcCC--------------CCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 4444 66777777777766663 35566666666666666553222 56666666666666654
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.7e-19 Score=172.81 Aligned_cols=195 Identities=23% Similarity=0.355 Sum_probs=136.1
Q ss_pred hhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCC
Q 037786 30 LKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHL 109 (565)
Q Consensus 30 ~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (565)
...+ ++|++|+++++.++. .+ .+..+++|++|++++| .+.+..+ +..+++|++|++++|.+++ + ..+..+++|
T Consensus 37 ~~~l-~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 37 QADL-DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSI 109 (308)
T ss_dssp HHHH-HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred HHHc-CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence 3444 667777777777763 33 4667777777777777 4444333 4455777777777777764 2 357777888
Q ss_pred CEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCc
Q 037786 110 RELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQ 189 (565)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 189 (565)
++|++++|.+++.. .+..+++|+.|++++|.+.+.. . +..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 110 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 88888888776542 3777788888888888776432 2 6777888888888887765444 7777888888888887
Q ss_pred ccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++..
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 775433 667788888888888876443 36778888888888888764
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=3e-19 Score=164.78 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=116.2
Q ss_pred cCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccC-CccCccCCccccCCCCCC
Q 037786 33 LSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSG-TRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 33 l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~ 110 (565)
.++++++|++++|+++...+..|..+++|++|++++|+......+ .+..+++|++|++++ |.++...+..|.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 346788888888888866666778888888888877721333332 223346666666665 566644445566666666
Q ss_pred EEEcccccCcccCchhccCCCCCC---eeeccCC-cccccCCcCccCCCCCC-EEEccCccccccCcCCcCCCCCCEEec
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLA---VLSLSFK-SFSGHIPPSLSNLHQLT-DVDLGSNSFDGQFPDIMNLTRISRLDI 185 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l 185 (565)
+|++++|.++. .|. |..+++|+ .|++++| .+....+..|..+++|+ .+++++|.+..........++|+.|++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 66666666654 232 55555555 6666666 55554445566666666 666666666544443222255666666
Q ss_pred cCCc-ccccCCCCCcCC-CCCCEEEcccccccCCCchhhcCCCCCCEEEccCC
Q 037786 186 SNNQ-LTGSIPSHGSGL-QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236 (565)
Q Consensus 186 ~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 236 (565)
++|+ +....+..|..+ ++|+.|++++|.++...+. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6663 554444555555 5666666666655532222 3445555555443
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=3.7e-21 Score=187.60 Aligned_cols=248 Identities=18% Similarity=0.211 Sum_probs=148.2
Q ss_pred CCccEEEccCCcccccCCccccCC--CCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCcc-CCccccCCCCCCE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRL--SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-LPDSICNLRHLRE 111 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 111 (565)
..+++++++++.+. +..+..+ ++++.|+++++ ...+..+.....++|++|++++|.+++. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34566666665554 3334444 56666666665 4444444444456666666666666543 5556667777777
Q ss_pred EEcccccCcccCchhccCCCCCCeeeccCC-ccccc-CCcCccCCCCCCEEEccCc-ccccc--CcCCcCCC-CCCEEec
Q 037786 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFK-SFSGH-IPPSLSNLHQLTDVDLGSN-SFDGQ--FPDIMNLT-RISRLDI 185 (565)
Q Consensus 112 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~--~~~~~~~~-~L~~L~l 185 (565)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+... ...+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777766666666667777777777777 45532 4445666777777777777 65532 22255666 7777777
Q ss_pred cCCc--cc-ccCCCCCcCCCCCCEEEccccc-ccCCCchhhcCCCCCCEEEccCCc-ccccC--CCCCCCCCcEEEccCC
Q 037786 186 SNNQ--LT-GSIPSHGSGLQNLAVLRLYNNT-LSGTIPSWLFTLPLLRDIDLSDNQ-LTGHL--DAFPSKSLRKLYLTNN 258 (565)
Q Consensus 186 ~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~~ 258 (565)
++|. ++ ...+..+..+++|++|++++|. ++...+..+..+++|+.|++++|. +.... .....++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7773 33 2334445566777777777776 554455566677777777777774 22111 1124677777777777
Q ss_pred ccccCCchhhhcCCCcCccccccccccCccC
Q 037786 259 RLHGSIPSSIFELANLTYLSLASNNFSGIVE 289 (565)
Q Consensus 259 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 289 (565)
+++.....+. .++..|++++|.+++..+
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccccC
Confidence 4433222222 246667788888876544
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.2e-20 Score=184.00 Aligned_cols=228 Identities=17% Similarity=0.168 Sum_probs=122.8
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCccc-CchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGF-LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
+.++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5566666666666644333 44566666666666665543 445556666666666666666555555566666666666
Q ss_pred ccCc-cccc--cCcCCcCCCCCCEEeccCC-ccccc-CCCCCcCCC-CCCEEEccccc--cc-CCCchhhcCCCCCCEEE
Q 037786 162 LGSN-SFDG--QFPDIMNLTRISRLDISNN-QLTGS-IPSHGSGLQ-NLAVLRLYNNT--LS-GTIPSWLFTLPLLRDID 232 (565)
Q Consensus 162 l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--l~-~~~~~~l~~~~~L~~L~ 232 (565)
+++| .+.. ....+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ ...+..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 3442 1222555666666666666 55532 233445556 66666666663 32 22334455566666666
Q ss_pred ccCCc-ccccCC--CCCCCCCcEEEccCCc-cccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCc
Q 037786 233 LSDNQ-LTGHLD--AFPSKSLRKLYLTNNR-LHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 233 l~~~~-~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
+++|. +.+... ....++|++|++++|. +.......+..+++|+.|++++| +..... ..+. ..++.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~-~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL-QLLK--EALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH-HHHH--HHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHH-HHHH--hhCcceEEeccc
Confidence 66666 332111 1244666666666663 22222224555666666666666 332211 1111 123344456666
Q ss_pred cccccCC
Q 037786 309 LSFGTTS 315 (565)
Q Consensus 309 i~~~~~~ 315 (565)
++...+.
T Consensus 305 l~~~~~~ 311 (336)
T 2ast_B 305 FTTIARP 311 (336)
T ss_dssp SCCTTCS
T ss_pred CccccCC
Confidence 6544443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.7e-19 Score=163.44 Aligned_cols=197 Identities=17% Similarity=0.192 Sum_probs=109.9
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEccccc-CcccCchhccCCCCCCeeeccC-CcccccCCcCccCCCCCCEE
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN-FYGFLPASLGNVTQLAVLSLSF-KSFSGHIPPSLSNLHQLTDV 160 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 160 (565)
+++++|++++|.++...+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.++...+.+|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 356666666666665545566666666666666665 6555555666666666666666 66665555566666666666
Q ss_pred EccCccccccCcCCcCCCCCC---EEeccCC-cccccCCCCCcCCCCCC-EEEcccccccCCCchhhcCCCCCCEEEccC
Q 037786 161 DLGSNSFDGQFPDIMNLTRIS---RLDISNN-QLTGSIPSHGSGLQNLA-VLRLYNNTLSGTIPSWLFTLPLLRDIDLSD 235 (565)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 235 (565)
++++|.+...+ .+..+++|+ .|++++| .+....+..|..+++|+ .|++++|.+....+..+.. +
T Consensus 111 ~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~--------- 179 (239)
T 2xwt_C 111 GIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T--------- 179 (239)
T ss_dssp EEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C---------
T ss_pred eCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C---------
Confidence 66666665432 255555555 6666665 55544444455555555 5555555554222222222 3
Q ss_pred CcccccCCCCCCCCCcEEEccCCc-cccCCchhhhcC-CCcCccccccccccCccChHhhhcCCCCCEEEccCC
Q 037786 236 NQLTGHLDAFPSKSLRKLYLTNNR-LHGSIPSSIFEL-ANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307 (565)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~ 307 (565)
+|++|++++|. ++...+..+..+ ++|+.|++++|.+... +. ..+++|+.|+++++
T Consensus 180 -------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~---~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 -------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS---KGLEHLKELIARNT 236 (239)
T ss_dssp -------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC---TTCTTCSEEECTTC
T ss_pred -------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch---hHhccCceeeccCc
Confidence 44444444442 443333445555 6666666666666533 21 14556666666654
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=3.4e-20 Score=182.26 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=78.7
Q ss_pred EEccCCccCccCCccccCCCCCCEEEcccccCcccCc----hhccCCC-CCCeeeccCCcccccCCcCccCC-----CCC
Q 037786 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP----ASLGNVT-QLAVLSLSFKSFSGHIPPSLSNL-----HQL 157 (565)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 157 (565)
++++++.+++.+|..+...++|++|++++|.+.+..+ .+|.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4555566655555544444556666666666655554 4555555 66666666666665444444432 666
Q ss_pred CEEEccCccccccCcC-----CcCC-CCCCEEeccCCcccccCCCC----CcC-CCCCCEEEcccccccCCCch----hh
Q 037786 158 TDVDLGSNSFDGQFPD-----IMNL-TRISRLDISNNQLTGSIPSH----GSG-LQNLAVLRLYNNTLSGTIPS----WL 222 (565)
Q Consensus 158 ~~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~l~~~~~~----~l 222 (565)
++|++++|.+....+. +..+ ++|+.|++++|.+++..+.. +.. .++|++|++++|.+...... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 6666666665543332 2233 55666666666555332222 112 23566666666555432222 22
Q ss_pred cCCC-CCCEEEccCCccc
Q 037786 223 FTLP-LLRDIDLSDNQLT 239 (565)
Q Consensus 223 ~~~~-~L~~L~l~~~~~~ 239 (565)
...+ +|++|++++|.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCc
Confidence 3333 5555555555554
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=4.5e-21 Score=190.55 Aligned_cols=253 Identities=18% Similarity=0.143 Sum_probs=181.3
Q ss_pred chhhhhcCCCccEEEccCCcccccCC----ccccCCCCCCEEecCCCC--CCCccCCCC--------CCCCCCcEEEccC
Q 037786 27 PGTLKNLSSSLTSLSLSYCRIQGEFP----ENIFRLSNLQMVRLKFNS--NLSGVFPRS--------NWTSPLRCLDVSG 92 (565)
Q Consensus 27 ~~~~~~l~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~L~~~~--~~~~~~~~~--------~~~~~L~~L~l~~ 92 (565)
...+..+ ++|++|++++|.++...+ ..+..+++|++|++++|. .+.+.++.. ..+++|++|++++
T Consensus 25 ~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3456666 778888888888775533 346678888888888762 222222211 3458888888888
Q ss_pred CccCc----cCCccccCCCCCCEEEcccccCcccCchhcc----CC---------CCCCeeeccCCccc-ccCC---cCc
Q 037786 93 TRFSG----QLPDSICNLRHLRELHLSQCNFYGFLPASLG----NV---------TQLAVLSLSFKSFS-GHIP---PSL 151 (565)
Q Consensus 93 ~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~~~-~~~~---~~~ 151 (565)
|.+.. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88875 3667788899999999999988654444443 33 89999999999887 2333 356
Q ss_pred cCCCCCCEEEccCccccc-----cCc-CCcCCCCCCEEeccCCccc----ccCCCCCcCCCCCCEEEcccccccCC----
Q 037786 152 SNLHQLTDVDLGSNSFDG-----QFP-DIMNLTRISRLDISNNQLT----GSIPSHGSGLQNLAVLRLYNNTLSGT---- 217 (565)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~---- 217 (565)
..+++|+.|++++|.+.. ..+ .+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+...
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 678899999999998862 334 5788999999999999985 45666778889999999999988754
Q ss_pred CchhhcC--CCCCCEEEccCCcccc-----cCCCC--CCCCCcEEEccCCccccCCc--hhhh-cCCCcCccccc
Q 037786 218 IPSWLFT--LPLLRDIDLSDNQLTG-----HLDAF--PSKSLRKLYLTNNRLHGSIP--SSIF-ELANLTYLSLA 280 (565)
Q Consensus 218 ~~~~l~~--~~~L~~L~l~~~~~~~-----~~~~~--~~~~L~~L~l~~~~~~~~~~--~~~~-~~~~L~~L~l~ 280 (565)
++..+.. +++|+.|++++|.+.. ..... ..++|+.|++++|.+++..+ ..+. .+++++..++.
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 3455533 8999999999999886 22222 35899999999999986653 2222 24455544443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=2.3e-18 Score=159.99 Aligned_cols=156 Identities=23% Similarity=0.246 Sum_probs=95.1
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (565)
.+++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44555555555555555556666666666666666665555556666666666666666665555556666666666666
Q ss_pred CccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 164 SNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 164 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
+|.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6666555444 455666666666666666555545666666666666666666555555566666666666666554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=173.92 Aligned_cols=222 Identities=20% Similarity=0.208 Sum_probs=147.2
Q ss_pred CCCcEEEccCCccCccCCc---cccCCCCCCEEEcccccCcccCchhc--cCCCCCCeeeccCCcccccCC----cCccC
Q 037786 83 SPLRCLDVSGTRFSGQLPD---SICNLRHLRELHLSQCNFYGFLPASL--GNVTQLAVLSLSFKSFSGHIP----PSLSN 153 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 153 (565)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4566667666655421100 11234567777777777776666666 777777777777777765433 23345
Q ss_pred CCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCCCch----hhcC
Q 037786 154 LHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGTIPS----WLFT 224 (565)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~ 224 (565)
+++|++|++++|.+....+. +..+++|++|++++|++.+. .+..+..+++|++|++++|.++. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 77777778777777665544 67777788888877776531 12334567778888888887752 222 2456
Q ss_pred CCCCCEEEccCCcccccCC-CC-C---CCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCC
Q 037786 225 LPLLRDIDLSDNQLTGHLD-AF-P---SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNL 299 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~-~~-~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L 299 (565)
+++|++|++++|.+.+..+ .. . .++|++|++++|.++ .+|..+. ++|+.|++++|.+.+. + .+..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~--~~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P--QPDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C--CTTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c--hhhhCCCc
Confidence 7788888888888776532 11 2 268888888888887 5565553 6888888888888754 2 25777888
Q ss_pred CEEEccCCcccc
Q 037786 300 AALELSHNSLSF 311 (565)
Q Consensus 300 ~~L~l~~~~i~~ 311 (565)
++|++++|++++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 899998888764
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=172.42 Aligned_cols=223 Identities=17% Similarity=0.177 Sum_probs=131.3
Q ss_pred CccEEEccCCcccccCCc---cccCCCCCCEEecCCCCCCCccCCCC---CCCCCCcEEEccCCccCccCC----ccccC
Q 037786 36 SLTSLSLSYCRIQGEFPE---NIFRLSNLQMVRLKFNSNLSGVFPRS---NWTSPLRCLDVSGTRFSGQLP----DSICN 105 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~ 105 (565)
.++.+.+.++.++..... .+..+++|++|++++| .+.+..+.. ...++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456666666555421111 1122355677777666 444444333 334667777777776664333 23345
Q ss_pred CCCCCEEEcccccCcccCchhccCCCCCCeeeccCCccccc----CCcCccCCCCCCEEEccCccccccCcC----CcCC
Q 037786 106 LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGH----IPPSLSNLHQLTDVDLGSNSFDGQFPD----IMNL 177 (565)
Q Consensus 106 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~ 177 (565)
+++|++|++++|.+....+..|.++++|++|++++|.+.+. .+..+..+++|++|++++|.+...... +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 66777777777777666666667777777777777765421 122335666777777777766532221 3456
Q ss_pred CCCCEEeccCCcccccCCCCCcCC---CCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEE
Q 037786 178 TRISRLDISNNQLTGSIPSHGSGL---QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLY 254 (565)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 254 (565)
++|++|++++|.+.+..|..+..+ ++|++|++++|.++ ..+..+. ++|+.|++++|++.+.......++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 777777777777766555555444 57777777777776 3343332 57777777777777544444556777777
Q ss_pred ccCCcccc
Q 037786 255 LTNNRLHG 262 (565)
Q Consensus 255 l~~~~~~~ 262 (565)
+++|.+++
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 77776653
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.9e-20 Score=184.05 Aligned_cols=224 Identities=17% Similarity=0.172 Sum_probs=140.5
Q ss_pred EEEcccccCcccCchhccCCCCCCeeeccCCcccccCC----cCccCCC-CCCEEEccCccccccCcC-CcCC-----CC
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIP----PSLSNLH-QLTDVDLGSNSFDGQFPD-IMNL-----TR 179 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~~-----~~ 179 (565)
.+.++.+.+++..+..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+...... +..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888887777777777779999999999886655 6677788 899999999988765443 3332 88
Q ss_pred CCEEeccCCcccccCCCC----CcCC-CCCCEEEcccccccCCCchhhc----C-CCCCCEEEccCCcccccCCCC----
Q 037786 180 ISRLDISNNQLTGSIPSH----GSGL-QNLAVLRLYNNTLSGTIPSWLF----T-LPLLRDIDLSDNQLTGHLDAF---- 245 (565)
Q Consensus 180 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~~---- 245 (565)
|++|++++|.+++..+.. +..+ ++|++|++++|.+....+..+. . .++|++|++++|.+.+.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888887554432 3334 6888888888888755544432 3 357888888888776422111
Q ss_pred ---CCCCCcEEEccCCccccCCchhhh----cC-CCcCccccccccccCccC---hHhhhc-CCCCCEEEccCCcccccc
Q 037786 246 ---PSKSLRKLYLTNNRLHGSIPSSIF----EL-ANLTYLSLASNNFSGIVE---PYMLAK-LVNLAALELSHNSLSFGT 313 (565)
Q Consensus 246 ---~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~n~~~~~~~---~~~l~~-~~~L~~L~l~~~~i~~~~ 313 (565)
..++|++|++++|.+++..+..+. .+ ++|+.|++++|.+.+... +..+.. .++|++|++++|.++...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 123667777777766654443332 33 366666666666654211 112223 346666666666665433
Q ss_pred C---CcccCCCCCccEEEcCCCCC
Q 037786 314 T---SKVNSSFPQIFILSLSACNI 334 (565)
Q Consensus 314 ~---~~~~~~~~~L~~L~l~~~~l 334 (565)
. ......+++|+.|++++|.+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCc
Confidence 3 12234455566666666553
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=6e-18 Score=157.13 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=113.7
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEcc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (565)
.++++++++.+..++. .+++++++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~p~----~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------- 68 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPS----GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY----------------------- 68 (251)
T ss_dssp GTEEECTTCCCSSCCS----CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-----------------------
T ss_pred CeEEecCCCCccccCC----CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-----------------------
Confidence 4556666655554432 1234566666666666555555555555555555554
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 69 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 69 -NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp -SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 4455445555666677777777777766666666667777777777777776555555666777777777777776655
Q ss_pred cC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCC
Q 037786 172 PD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217 (565)
Q Consensus 172 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 217 (565)
+. +..+++|+.|++++|++.+..+..+..+++|+.|++++|.+...
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 53 66777777777777777766666677777777788777777543
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=8.3e-21 Score=188.63 Aligned_cols=245 Identities=18% Similarity=0.169 Sum_probs=121.7
Q ss_pred cCCccccCCCCCCEEEcccccCcccCch----hccCCCCCCeeeccCCcc---cccCCcCc-------cCCCCCCEEEcc
Q 037786 98 QLPDSICNLRHLRELHLSQCNFYGFLPA----SLGNVTQLAVLSLSFKSF---SGHIPPSL-------SNLHQLTDVDLG 163 (565)
Q Consensus 98 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~ 163 (565)
.++..+..+++|++|++++|.+....+. .+..+++|++|++++|.+ .+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4455666677777777777776654333 355677777777777533 23333333 466677777777
Q ss_pred Cccccc-----cCcCCcCCCCCCEEeccCCcccccCCCCC----cCC---------CCCCEEEcccccccC-CCc---hh
Q 037786 164 SNSFDG-----QFPDIMNLTRISRLDISNNQLTGSIPSHG----SGL---------QNLAVLRLYNNTLSG-TIP---SW 221 (565)
Q Consensus 164 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~l~~-~~~---~~ 221 (565)
+|.+.. ....+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.+.. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 776654 11225556666666666666543222222 122 566666666666542 122 23
Q ss_pred hcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccC----ccChHhhhcCC
Q 037786 222 LFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG----IVEPYMLAKLV 297 (565)
Q Consensus 222 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~l~~~~ 297 (565)
+..+++|+.|++++|.+..... ....+..+..+++|+.|++++|.+.. .+ +..+..++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~-----------------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l~~~~ 244 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGI-----------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIALKSWP 244 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHH-----------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHGGGCT
T ss_pred HHhCCCcCEEECcCCCCCHhHH-----------------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHHccCC
Confidence 4455566666666665542100 00011133344444444444444421 11 12344445
Q ss_pred CCCEEEccCCccccccCCcc---c--CCCCCccEEEcCCCCCCC-----CCchh-hc-cccceEeccCCcCcccC
Q 037786 298 NLAALELSHNSLSFGTTSKV---N--SSFPQIFILSLSACNISA-----FPSFL-RS-LELAYLDLSENNIDGQI 360 (565)
Q Consensus 298 ~L~~L~l~~~~i~~~~~~~~---~--~~~~~L~~L~l~~~~l~~-----l~~~~-~~-~~L~~L~l~~n~l~~~~ 360 (565)
+|++|++++|.++......+ . ..+++|+.|++++|.++. ++..+ .. ++|+.|++++|++++..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555555443211111 0 124555555555555553 44433 21 35666666666665433
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=2.6e-18 Score=176.51 Aligned_cols=187 Identities=24% Similarity=0.341 Sum_probs=139.8
Q ss_pred CCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEE
Q 037786 297 VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLD 376 (565)
Q Consensus 297 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 376 (565)
.+++.|++++|.++. .+..+ +++|+.|++++|.++.+| ....+|+.|++++|.+++ +|. +. .+|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~----~~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LP----ASLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CC----TTCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hh----cCCCEEE
Confidence 389999999998876 33333 378999999999999888 223489999999999884 666 32 2899999
Q ss_pred cCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEe
Q 037786 377 LSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLN 456 (565)
Q Consensus 377 ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 456 (565)
+++|.++.++. .+++|+.|++++|.+.+ +|..+++|++|++++|++++ +|. +. ++|++|+
T Consensus 127 Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~----------------~~L~~L~ 186 (571)
T 3cvr_A 127 VDNNQLTMLPE-LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP----------------ESLEALD 186 (571)
T ss_dssp CCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC----------------TTCCEEE
T ss_pred CCCCcCCCCCC-cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh----------------CCCCEEE
Confidence 99999988877 77889999999998886 45577888888888888875 332 21 6888888
Q ss_pred CcCCCCCCCcccCCCcc-------cEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCC
Q 037786 457 LSHNFITKMKQISWKNL-------GYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIA 517 (565)
Q Consensus 457 l~~n~l~~~~~~~~~~L-------~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 517 (565)
+++|.|+.+|. ...+| +.|++++|.++. +|. .+++|+.|++++|.+++..|..+..++.
T Consensus 187 Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 187 VSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCSSCCSSCCC-CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CcCCCCCchhh-HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888887765 33366 788888887775 343 5777888888888887777777766543
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=3.5e-18 Score=154.95 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=123.5
Q ss_pred cEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC---CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCC
Q 037786 373 SFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK 449 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (565)
+.++++++.++.++....++++.|++++|.+....+. .+++|++|++++|++++..+..+..+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-------------- 79 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-------------- 79 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC--------------
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC--------------
Confidence 4566677777776665556777777777777755442 36788888888888888778888877
Q ss_pred CCCcEEeCcCCCCCCCcc---cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeC
Q 037786 450 DSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDL 523 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 523 (565)
++|++|++++|.++.+|. ..+++|+.|++++|.+++..+. .+++|+.|++++|.+++..+..|..+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 899999999999998854 5688999999999998875443 7789999999999999888888999999999999
Q ss_pred CCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 524 SNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 524 ~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
++|++.|. |.+.|...|+.
T Consensus 160 ~~N~~~c~-----------c~l~~l~~~l~ 178 (220)
T 2v9t_B 160 AQNPFICD-----------CHLKWLADYLH 178 (220)
T ss_dssp CSSCEECS-----------GGGHHHHHHHH
T ss_pred CCCCcCCC-----------CccHHHHHHHH
Confidence 99999876 56666655543
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=154.27 Aligned_cols=145 Identities=20% Similarity=0.161 Sum_probs=110.7
Q ss_pred cEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccC
Q 037786 373 SFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
+.+++++|.++.++....+.+++|++++|.+.+..+. .+++|++|++++|++++..+..+..+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l------------- 80 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA------------- 80 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC-------------
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC-------------
Confidence 4666666666666655555667777777777665432 37788888888888887666677776
Q ss_pred CCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEe
Q 037786 449 KDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLD 522 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 522 (565)
++|++|++++|.++.+ +. ..+++|+.|++++|.+++..+. .+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 81 -~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 81 -SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp -TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred -CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 8888888888888888 32 6678888888888888765443 678888999999998888788889999999999
Q ss_pred CCCCcCccc
Q 037786 523 LSNNRLSGT 531 (565)
Q Consensus 523 l~~n~~~~~ 531 (565)
+++|++.|.
T Consensus 160 L~~N~l~c~ 168 (220)
T 2v70_A 160 LLANPFNCN 168 (220)
T ss_dssp CCSCCEECS
T ss_pred ecCcCCcCC
Confidence 999998876
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.2e-17 Score=148.68 Aligned_cols=178 Identities=18% Similarity=0.148 Sum_probs=105.7
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCC-CCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~l~ 91 (565)
+.++.+++.+..+.. ..++++++|++++|+++...+..+..+++|++|++++| .+....+.. ...++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECC
Confidence 467777777665543 22467888888888887666666777888888888777 444333322 233666666666
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
+|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 66666444444556666666666666665555555566666666666666665444444555666666666665433
Q ss_pred cCCcCCCCCCEEeccCCcccccCCCCCcCC
Q 037786 172 PDIMNLTRISRLDISNNQLTGSIPSHGSGL 201 (565)
Q Consensus 172 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 201 (565)
+.++.|+.+++..|.+++.+|..++.+
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 234455555555555555555544433
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=8e-18 Score=164.44 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=152.0
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC--CCCCCCCcE-EE
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR--SNWTSPLRC-LD 89 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~L~~-L~ 89 (565)
++++.++++++.++. .+|+++++|+|++|+|+...+.+|.++++|++|+|++| ...+.++. +..++++++ +.
T Consensus 12 ~~v~C~~~~Lt~iP~----~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS----DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCT----TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCc----CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhc
Confidence 678888888876643 34678999999999999766678999999999999998 44343332 233455554 45
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccC-CcccccCCcCccCC-CCCCEEEccCccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSF-KSFSGHIPPSLSNL-HQLTDVDLGSNSF 167 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 167 (565)
+.+|.++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+ ..++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 556777766677778888888888888887766666666666777777755 34554444555555 3567777777777
Q ss_pred cccCcCCcCCCCCCEEeccC-CcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcc-cccCCCC
Q 037786 168 DGQFPDIMNLTRISRLDISN-NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQL-TGHLDAF 245 (565)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~ 245 (565)
..+.+......+|+.+++.+ |.++.+.+..|..+++|++|++++|.++...+.. +.+|+.|.+.++.- ...+...
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTT
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCch
Confidence 76666655566677777764 4555444455677777777777777776433322 34445555444322 2222222
Q ss_pred CCCCCcEEEcc
Q 037786 246 PSKSLRKLYLT 256 (565)
Q Consensus 246 ~~~~L~~L~l~ 256 (565)
..++|+.+++.
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 44455555554
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.7e-17 Score=170.37 Aligned_cols=190 Identities=26% Similarity=0.320 Sum_probs=159.4
Q ss_pred CCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCC
Q 037786 322 PQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSN 401 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n 401 (565)
.+++.|++++|.++.+|..+. .+|+.|++++|.++ .+| . .+++|+.|++++|.++.++. ...+|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~-~ip-~----~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP-PQITVLEITQNALI-SLP-E----LPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCS-CCC-C----CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCc-ccc-c----ccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC
Confidence 379999999999999887553 58999999999999 777 2 46899999999999999887 4459999999999
Q ss_pred cccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCC
Q 037786 402 LLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSN 481 (565)
Q Consensus 402 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n 481 (565)
++.+. |..+++|++|++++|++++ ++. .+ ++|++|++++|.++.+|. ..++|+.|++++|
T Consensus 131 ~l~~l-p~~l~~L~~L~Ls~N~l~~-lp~---~l--------------~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 131 QLTML-PELPALLEYINADNNQLTM-LPE---LP--------------TSLEVLSVRNNQLTFLPE-LPESLEALDVSTN 190 (571)
T ss_dssp CCSCC-CCCCTTCCEEECCSSCCSC-CCC---CC--------------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred cCCCC-CCcCccccEEeCCCCccCc-CCC---cC--------------CCcCEEECCCCCCCCcch-hhCCCCEEECcCC
Confidence 99984 4489999999999999986 333 23 899999999999999966 3389999999999
Q ss_pred cccccCCCCCCCC-------cEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 037786 482 LLQGPLLVPPSSL-------RVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSP 541 (565)
Q Consensus 482 ~l~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~ 541 (565)
.++. +|....+| +.|++++|.++ .+|..+..+++|+.|+|++|++.+.+|+.+..+++
T Consensus 191 ~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 191 LLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCSS-CCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCc-hhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 9985 44444477 99999999999 47777888999999999999999888888766544
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=5.4e-17 Score=158.55 Aligned_cols=218 Identities=21% Similarity=0.171 Sum_probs=144.2
Q ss_pred CCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC---CCCCCcE-EEccCCccccCCchhhhcCCCcCccc
Q 037786 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF---PSKSLRK-LYLTNNRLHGSIPSSIFELANLTYLS 278 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~-L~l~~~~~~~~~~~~~~~~~~L~~L~ 278 (565)
++++|++++|.++...+..|.++++|++|++++|.+.+..+.. ..+++++ +.+..|.++...+..+..+++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 4555555555554333344555555555555555543322211 2333333 44445666655566777788888888
Q ss_pred cccccccCccChHhhhcCCCCCEEEccCC-ccccccCCcccCCCCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcC
Q 037786 279 LASNNFSGIVEPYMLAKLVNLAALELSHN-SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNI 356 (565)
Q Consensus 279 l~~n~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l 356 (565)
+++|.+.... +..+.....+..+++.++ .+.......+......++.|++++|+++.++..+... +++++++++++.
T Consensus 111 l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 8888887543 334455566777888664 5554444444333456889999999999887765444 899999986444
Q ss_pred cccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC--CCCCCcEEEcccc
Q 037786 357 DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV--PPPRLQFLLASNN 422 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n 422 (565)
.+.+|...+. ++++|+.|++++|+++.++...+.+|++|.+.++......|. .+++|+.++++++
T Consensus 190 l~~i~~~~f~-~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 190 LEELPNDVFH-GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCTTTTT-TEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ccCCCHHHhc-cCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 4477766544 678999999999999999998899999999988766656664 3888999998765
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.2e-17 Score=156.68 Aligned_cols=166 Identities=21% Similarity=0.237 Sum_probs=92.3
Q ss_pred CCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEc
Q 037786 320 SFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKL 398 (565)
Q Consensus 320 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l 398 (565)
.+++++.|++++|.+..++.+....+|++|++++|.+++ ++. +. .+++|+.|++++|.++.++.. .+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~-l~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP-LA--NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-GT--TCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc-cc--cCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 456777777777777776654444477777777777763 332 22 456777777777777665542 5556666666
Q ss_pred CCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEE
Q 037786 399 QSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYL 476 (565)
Q Consensus 399 ~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L 476 (565)
++|++.+... ..+++|++|++++|++++. ..+..+ ++|++|++++|.+.++ +...+++|+.|
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l--------------~~L~~L~L~~N~l~~~~~l~~l~~L~~L 183 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRL--------------TKLDTLSLEDNQISDIVPLAGLTKLQNL 183 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGC--------------TTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccC--------------CCCCEEEccCCccccchhhcCCCccCEE
Confidence 6666554211 1155555555555555543 334444 5555555555555555 33445555555
Q ss_pred ECCCCcccccC-CCCCCCCcEeeccCceee
Q 037786 477 DLRSNLLQGPL-LVPPSSLRVILILNNQFT 505 (565)
Q Consensus 477 ~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~ 505 (565)
++++|.+++.. ...+++|+.|++++|+++
T Consensus 184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 184 YLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred ECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 55555554311 114445555555555544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=4.6e-17 Score=146.52 Aligned_cols=178 Identities=21% Similarity=0.206 Sum_probs=118.3
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555566555 334333 356777777777777666666677777777777777777555556677777777777777
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA 244 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 244 (565)
.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 77655554 5677777777777777776555566777777888887777775555566777777777777776553
Q ss_pred CCCCCCcEEEccCCccccCCchhhhcC
Q 037786 245 FPSKSLRKLYLTNNRLHGSIPSSIFEL 271 (565)
Q Consensus 245 ~~~~~L~~L~l~~~~~~~~~~~~~~~~ 271 (565)
.++.++.|+++.+.+++.+|..+..+
T Consensus 163 -~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 -TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -CCCCHHHHHHHHHhCCceeeccCccc
Confidence 23456666666666666666555443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=7e-17 Score=153.12 Aligned_cols=186 Identities=24% Similarity=0.331 Sum_probs=141.2
Q ss_pred EcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCcc
Q 037786 16 FLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRF 95 (565)
Q Consensus 16 ~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 95 (565)
.+....+.+.. .+..+ ++|++|++++|.++. . ..+..+++|++|++++| .+.+..+ +..+++|++|++++|.+
T Consensus 30 ~l~~~~~~~~~--~~~~l-~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNEL-NSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEE--CHHHH-HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HhcCCCccccc--chhhc-CcccEEEccCCCccc-C-hhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcC
Confidence 44555554432 24455 778888888888873 3 34777888888888887 4554433 55558888888888888
Q ss_pred CccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCc
Q 037786 96 SGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM 175 (565)
Q Consensus 96 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 175 (565)
++ + ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+....+ +.
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hc
Confidence 74 3 3488889999999999988764 5678889999999999988854 678888999999999998876655 88
Q ss_pred CCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCC
Q 037786 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217 (565)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 217 (565)
.+++|+.|++++|.+.+. + .+..+++|+.|++++|.+...
T Consensus 176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 889999999999988854 3 378889999999999988643
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=2.1e-16 Score=164.22 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=100.1
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEE
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLK 397 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~ 397 (565)
..++.|+.|++++|.+..++.+....+|+.|++++|.+.+. +. +. .+++|+.|+|++|.++.++.. .+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~-~~-l~--~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KP-LT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC-GG-GG--GCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC-hh-hc--cCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 34567777777777777776554445777777777777743 32 22 467777777777777766543 556666666
Q ss_pred cCCCcccccCCC-CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccE
Q 037786 398 LQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGY 475 (565)
Q Consensus 398 l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~ 475 (565)
+++|++.+.... .+++|+.|++++|++++. ..+..+ ++|++|+|++|.+.++ |...+++|+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l--------------~~L~~L~Ls~N~l~~~~~l~~l~~L~~ 179 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRL--------------TKLDTLSLEDNQISDIVPLAGLTKLQN 179 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSC--------------TTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc--hhhccc--------------CCCCEEECcCCcCCCchhhccCCCCCE
Confidence 666666542111 156666666666666543 344444 5666666666666665 4355556666
Q ss_pred EECCCCcccccC-CCCCCCCcEeeccCceeeec
Q 037786 476 LDLRSNLLQGPL-LVPPSSLRVILILNNQFTGE 507 (565)
Q Consensus 476 L~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~~~ 507 (565)
|++++|.+++.. ...+++|+.|++++|+++..
T Consensus 180 L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 180 LYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred EECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 666666555421 11555556666666555543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=3.4e-16 Score=141.80 Aligned_cols=151 Identities=20% Similarity=0.286 Sum_probs=97.2
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+....+.+|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444332 46666666666666665556666666666666666666656666666666777777666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
.+....+. +..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66655544 556666777777777666666666666777777777777766555556666666777777666654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=2.4e-16 Score=163.86 Aligned_cols=171 Identities=25% Similarity=0.348 Sum_probs=92.7
Q ss_pred hhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCC
Q 037786 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 31 ~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (565)
..+ ++|+.|++++|.+.. ++ .+..+++|+.|+|++| .+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 40 ~~L-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHH-TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hcC-CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 344 555555665555542 22 3555556666666555 3333222 3334556666666665553 22 455566666
Q ss_pred EEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcc
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQL 190 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 190 (565)
+|+|++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 666666655542 3455566666666666655532 445556666666666666554444 55566666666666655
Q ss_pred cccCCCCCcCCCCCCEEEccccccc
Q 037786 191 TGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+. ..+..+++|+.|++++|.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 532 23555566666666666554
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=3.1e-16 Score=139.62 Aligned_cols=149 Identities=15% Similarity=0.244 Sum_probs=73.7
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++|++|++++|.++ ..+ .+..+++|++|++++| ... .++.+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 55666666666665 333 4556666666666655 221 2223333355555555555555444445555555555555
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCc-ccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcc
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKS-FSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQL 190 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 190 (565)
++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+.... .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 5555554444555555555555555554 33 222 3444555555555555444322 344444444444444443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=138.53 Aligned_cols=150 Identities=20% Similarity=0.293 Sum_probs=91.5
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
.++++++.++ .+|..+ .+.+++|++++|.++...+ ..|.++++|++|++++|.+++..+.+|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5555555555 344433 2344666666666655433 34566666666666666666555556666666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66655544 556666666666666666555666666666666666666666555566666666666666666655
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=3.3e-15 Score=136.26 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=62.7
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
++|++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 33444444444444444444445555555555555544444444445555555555555554433334444555555555
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
++|.+..++..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55554433333444444555555554444333334444444444444444443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=7.1e-16 Score=137.27 Aligned_cols=153 Identities=16% Similarity=0.269 Sum_probs=128.6
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCc-cCCCCCCCCCC
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSG-VFPRSNWTSPL 85 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L 85 (565)
+.+++|++|++++|.+.... .+..+ ++|++|++++|.++ .+..+..+++|++|++++| .+.+ ....+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 56789999999999998654 57777 89999999999876 3457899999999999999 5554 45566666999
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEccccc-CcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN-FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
++|++++|.+++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 999999999998788899999999999999998 6654 3 68999999999999999985 33 788999999999999
Q ss_pred ccccc
Q 037786 165 NSFDG 169 (565)
Q Consensus 165 ~~~~~ 169 (565)
|++..
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 98753
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=2.8e-15 Score=136.72 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=128.3
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
..-+.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|+.|++
T Consensus 19 Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 19 CSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 34567888888887 5665443 88999999999999888888999999999999999998666677889999999999
Q ss_pred cCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 163 GSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
++|.+....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++.+|++..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999877666 678999999999999988 567778888999999999998886666678888888888888887763
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=8.5e-16 Score=150.66 Aligned_cols=174 Identities=22% Similarity=0.199 Sum_probs=97.3
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCC--CCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 38 TSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSN--WTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 38 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
++++++++.++ .+|..+. +.++.|++++| .+....+... ..++|++|++++|.++...+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34444444444 2333222 23444555544 3333333222 23555555555555554445556666666666666
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-C---cCCCCCCEEeccCCccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-I---MNLTRISRLDISNNQLT 191 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~ 191 (565)
+|.+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|.+...... + ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 6666665555666666666666666666655566666666666666666666654444 2 45667777777777666
Q ss_pred ccCCCCCcCCCC--CCEEEccccccc
Q 037786 192 GSIPSHGSGLQN--LAVLRLYNNTLS 215 (565)
Q Consensus 192 ~~~~~~~~~~~~--L~~L~l~~~~l~ 215 (565)
...+..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 443344444554 366777777665
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=7e-16 Score=143.83 Aligned_cols=165 Identities=20% Similarity=0.196 Sum_probs=100.7
Q ss_pred ccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCc
Q 037786 324 IFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNL 402 (565)
Q Consensus 324 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~ 402 (565)
+..++++++.++.++.+....+|+.|++++|.++ .++ .+. .+++|+.|++++|+++.+++ ..+++|+.|++++|+
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~l~--~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQ--FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-HHh--hCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence 4444455555554443333335555555555555 333 222 34556666666666655554 245566666666666
Q ss_pred ccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCCC
Q 037786 403 LQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSN 481 (565)
Q Consensus 403 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~n 481 (565)
+.+..+...++|++|++++|++++. ..+..+ ++|++|++++|++++++. ..+++|+.|++++|
T Consensus 97 l~~l~~~~~~~L~~L~L~~N~l~~~--~~l~~l--------------~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 97 LKNLNGIPSACLSRLFLDNNELRDT--DSLIHL--------------KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CSCCTTCCCSSCCEEECCSSCCSBS--GGGTTC--------------TTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS
T ss_pred cCCcCccccCcccEEEccCCccCCC--hhhcCc--------------ccccEEECCCCcCCCChHHccCCCCCEEECCCC
Confidence 6543222236777777777777653 245555 788888888888887743 67788888888888
Q ss_pred cccccC-CCCCCCCcEeeccCceeeecc
Q 037786 482 LLQGPL-LVPPSSLRVILILNNQFTGEI 508 (565)
Q Consensus 482 ~l~~~~-~~~~~~L~~L~l~~n~~~~~~ 508 (565)
.+++.. ...+++|+.|++++|.++...
T Consensus 161 ~i~~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 161 EITNTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCBCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCcchHHhccCCCCCEEeCCCCcccCCc
Confidence 877642 127778888888888887553
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.5e-15 Score=148.98 Aligned_cols=156 Identities=23% Similarity=0.165 Sum_probs=76.3
Q ss_pred CCCcEEEccCCccCccCCcccc-CCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 83 SPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
..++.|++++|.++...+..|. ++++|++|++++|.+....+.+|.++++|++|++++|.+....+..|..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3455555555555544444444 555555555555555555445555555555555555555544444455555555555
Q ss_pred ccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCC---cCCCCCCEEEcccccccCCCchhhcCCCC--CCEEEccC
Q 037786 162 LGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHG---SGLQNLAVLRLYNNTLSGTIPSWLFTLPL--LRDIDLSD 235 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~l~~~~~--L~~L~l~~ 235 (565)
+++|.+....+. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+....+..+..++. ++.|++.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 555555544332 4555555555555555543322222 33455555555555554333333444433 23444444
Q ss_pred Ccc
Q 037786 236 NQL 238 (565)
Q Consensus 236 ~~~ 238 (565)
|++
T Consensus 199 N~~ 201 (361)
T 2xot_A 199 NPL 201 (361)
T ss_dssp SCE
T ss_pred CCc
Confidence 433
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=7e-15 Score=137.02 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=128.9
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEE
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCL 88 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 88 (565)
+.+++.++++++.+.+.. .+..+ ++|++|++++|.++. .+ .+..+++|++|++++| .+.+..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEE
Confidence 344566777787777654 46677 888888888888873 44 6788888888888888 5555444 5556888888
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
++++|.+++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+.
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 888888874 333 333 8889999998888764 4588888899999999888753 36788889999999998887
Q ss_pred ccCcCCcCCCCCCEEeccCCccccc
Q 037786 169 GQFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
.. ..+..+++|+.|++++|++...
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch-HHhccCCCCCEEeCCCCcccCC
Confidence 66 5688888899999988887743
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=6.7e-14 Score=138.93 Aligned_cols=311 Identities=11% Similarity=0.046 Sum_probs=182.9
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT 82 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 82 (565)
+.+|.+|++|+++.+.. .++.+...+|.++ .+|+.+++..+ ++.....+|..+..|+.+.+..+ ...........
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeec
Confidence 45788888888888864 3666777788887 88888888655 55566677888888888776644 22211222222
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
..+........ +......+|.+|++|+.+.+..+ +......+|.++.+|+.+++..+ +......+|.++..|+.+.+
T Consensus 139 ~~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 139 CDFKEITIPEG-VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccccccccCcc-ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 22333332221 12233466778888888888654 34456667788888888887655 44345567777777777776
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
..+... ..........|+.+.+... +.......+..+..++.+.+..+... .....|..+..++.+......+. ..
T Consensus 216 ~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-~~ 291 (394)
T 4fs7_A 216 PNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-EK 291 (394)
T ss_dssp CTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-TT
T ss_pred CCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-cc
Confidence 655332 2233444567777777543 23345566777777877777665432 44456667777777766554432 22
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
....+.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ ++ .+...+|.+|.+|+.+.+..+ ++..... .+..++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGAN-AFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT-TBTTCT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHH-HhhCCC
Confidence 2335566666666543 33233445666666666666543 22 233455666666666666544 3322222 235555
Q ss_pred CccEEEcC
Q 037786 323 QIFILSLS 330 (565)
Q Consensus 323 ~L~~L~l~ 330 (565)
+|+.+++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 56665554
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=2.2e-15 Score=133.32 Aligned_cols=119 Identities=21% Similarity=0.171 Sum_probs=66.5
Q ss_pred cEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccC
Q 037786 373 SFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
+.+++++|.++.++....+++++|++++|.+.+..+. .+++|++|++++|++++..+..+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA------------- 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-------------
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc-------------
Confidence 5667777777666665445666666666666554432 25566666666666665555555555
Q ss_pred CCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceee
Q 037786 449 KDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFT 505 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~ 505 (565)
++|++|++++|++..+ +. ..+++|+.|++++|.+++..+. .+++|++|++++|+++
T Consensus 78 -~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 78 -SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5666666666666555 22 3445555555555555543332 3445555555555544
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=132.50 Aligned_cols=136 Identities=24% Similarity=0.267 Sum_probs=97.8
Q ss_pred CeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c--cCC
Q 037786 394 KYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q--ISW 470 (565)
Q Consensus 394 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~--~~~ 470 (565)
+.++++++.+.......++++++|++++|+++ .++..+..+ ++|++|++++|.++.++ . ..+
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l--------------~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNY--------------KHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGC--------------TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcc--------------cCCCEEECCCCcCCEeCHhHccCC
Confidence 34555555555333233566777777777776 344566666 78888888888888883 2 667
Q ss_pred CcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCccccc
Q 037786 471 KNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKW 547 (565)
Q Consensus 471 ~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~ 547 (565)
++|+.|++++|.+++..+. .+++|+.|++++|.++...+..|..+++|+.|++++|++.|. |.+.|
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~-----------c~l~~ 146 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD-----------CNMQW 146 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS-----------GGGHH
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC-----------CcCHH
Confidence 7888888888888764433 678888999999998877777788899999999999999876 66666
Q ss_pred CCCCcccc
Q 037786 548 PSRWSATT 555 (565)
Q Consensus 548 ~~~~~~~~ 555 (565)
...|+...
T Consensus 147 l~~~~~~~ 154 (193)
T 2wfh_A 147 LSDWVKSE 154 (193)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 66666443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1e-17 Score=173.07 Aligned_cols=197 Identities=19% Similarity=0.148 Sum_probs=135.0
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCc-------------CcccCChhhhhhCCCCccEEE-cCCCccC
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENN-------------IDGQIPNWMWEVGKDTLSFLD-LSHNFIT 383 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-------------l~~~~~~~~~~~~~~~L~~L~-ls~n~l~ 383 (565)
...+.|+.|++++|.++.+|..+... +|+.|++++|. ..+..|..+. .+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--HHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--HHHhcccCcchhhcccc
Confidence 34566677777777777676666555 67777765543 2222232222 234555555 4444332
Q ss_pred CccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCC
Q 037786 384 EMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463 (565)
Q Consensus 384 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (565)
+|+.+.+++|.+.... ...|++|++++|++++ +|. +..+ ++|++|++++|.++
T Consensus 424 --------~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~-lp~-~~~l--------------~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKME---YADVRVLHLAHKDLTV-LCH-LEQL--------------LLVTHLDLSHNRLR 476 (567)
T ss_dssp --------HHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSS-CCC-GGGG--------------TTCCEEECCSSCCC
T ss_pred --------hhhhhhhhcccccccC---ccCceEEEecCCCCCC-CcC-cccc--------------ccCcEeecCccccc
Confidence 2334444445444321 2357888888888876 343 7776 88999999999998
Q ss_pred CCcc--cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCcccCCCCC--
Q 037786 464 KMKQ--ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSGTIPKCI-- 536 (565)
Q Consensus 464 ~~~~--~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~p~~l-- 536 (565)
.+|. ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+++.. |..+..+++|+.|+|++|++.+. |+..
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~ 554 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQER 554 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTH
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHH
Confidence 7765 778899999999999887 444 7889999999999998776 88999999999999999999854 4443
Q ss_pred --CCCCCCcccc
Q 037786 537 --GNFSPWCQTK 546 (565)
Q Consensus 537 --~~l~~L~~l~ 546 (565)
..+++|+.|+
T Consensus 555 l~~~lp~L~~L~ 566 (567)
T 1dce_A 555 LAEMLPSVSSIL 566 (567)
T ss_dssp HHHHCTTCSEEE
T ss_pred HHHHCcccCccC
Confidence 2378888775
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1.9e-13 Score=134.89 Aligned_cols=264 Identities=10% Similarity=0.097 Sum_probs=166.6
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCc
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLR 86 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 86 (565)
..+..++.+.+..+ +..+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+..+ ...-....+..+++|+
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~--~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS--QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC--CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-CCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECCc-cCEehHhhcccC--CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-ccEehHHHhhCcccCC
Confidence 34566777777643 555666667663 5777777665 555666667764 5777777653 1112223344457777
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (565)
.+++.++.++.....+|. +.+|+.+.+.. .+......+|.++++|+.+++..+ +......+|.+ .+|+.+.+.. .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 777777777654445554 57777777764 366666677777778888877654 44445556666 6777777743 3
Q ss_pred ccccCcC-CcCCCCCCEEeccCCccc-----ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 167 FDGQFPD-IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 167 ~~~~~~~-~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+..+... |..+++|+.+.+.++.+. .+....|..|++|+.+++.+ .+.......|.+|++|+.+.+..+ +..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 4444333 777778888877766543 35566777788888888874 355455667777888888887655 332
Q ss_pred cC-CCC-CCCCCcEEEccCCccccCCchhhhcCC-CcCccccccccc
Q 037786 241 HL-DAF-PSKSLRKLYLTNNRLHGSIPSSIFELA-NLTYLSLASNNF 284 (565)
Q Consensus 241 ~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~ 284 (565)
.. ..+ .+ +|+.+.+.++.........+..++ +++.+.+..+.+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 21 122 44 788888887776644455555553 567777766554
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.9e-14 Score=139.23 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=39.9
Q ss_pred CCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCC-EEEcccccccCCCchhhcCCCCCCEE
Q 037786 154 LHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLA-VLRLYNNTLSGTIPSWLFTLPLLRDI 231 (565)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L 231 (565)
+++|+.+++++|.+..+... |..+++|+.+++.++ +..+.+..|.+|++|+ .+++.+ .+....+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 44555555555444443333 444555555555444 4334444455555555 555544 3333334445555555555
Q ss_pred EccCCccc
Q 037786 232 DLSDNQLT 239 (565)
Q Consensus 232 ~l~~~~~~ 239 (565)
++..+.+.
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 55444444
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=125.80 Aligned_cols=133 Identities=22% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCccEEEccCCccc-ccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 34 SSSLTSLSLSYCRIQ-GEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 34 ~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
+++|++|++++|.++ +.+|..+..+++|++|++++| .+... ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777777777776 455666677777777777776 33333 334444666666666666654455555556666666
Q ss_pred EcccccCcccC-chhccCCCCCCeeeccCCcccccCC---cCccCCCCCCEEEccCcccc
Q 037786 113 HLSQCNFYGFL-PASLGNVTQLAVLSLSFKSFSGHIP---PSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 113 ~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~ 168 (565)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666655432 2455556666666666666553332 24555556666665555544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.4e-14 Score=125.40 Aligned_cols=129 Identities=21% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCcEEEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 84 PLRCLDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 84 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
+|++|++++|.++ +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 23344444444445555544444433 34444444444444444444333444444444444444
Q ss_pred cCccccccC--cCCcCCCCCCEEeccCCcccccCC---CCCcCCCCCCEEEcccccc
Q 037786 163 GSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIP---SHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 163 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l 214 (565)
++|.+.... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 444444322 224444444444444444442221 1333444444444444433
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=3.9e-17 Score=168.74 Aligned_cols=103 Identities=26% Similarity=0.374 Sum_probs=46.9
Q ss_pred CCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCC
Q 037786 109 LRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNN 188 (565)
Q Consensus 109 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 188 (565)
|+.|++++|.+++. |. |..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+.++ +.++.+++|+.|++++|
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-cccCCCCCCcEEECCCC
Confidence 44444444444432 22 444444444444444444 3444444444444444444444432 24444444444444444
Q ss_pred cccccC-CCCCcCCCCCCEEEccccccc
Q 037786 189 QLTGSI-PSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 189 ~~~~~~-~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+++.. |..+..+++|+.|++++|.+.
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 444333 444444444444444444443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=1.8e-13 Score=120.95 Aligned_cols=129 Identities=21% Similarity=0.373 Sum_probs=91.9
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCch-hccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA-SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
+.++++++.++ .+|..+. .++++|++++|.+....+. .|..+++|++|++++|.+++..|.+|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777765 4555443 2777777777777665553 467777788888887777766677777777777777777
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 217 (565)
|.+....+. +..+++|+.|++++|++++..+..+..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777766655 66777777777777777776677777777777777777776543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3e-14 Score=120.49 Aligned_cols=128 Identities=21% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCccEEEccCCccc-ccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 34 SSSLTSLSLSYCRIQ-GEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 34 ~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
++++++|++++|.++ +..|..+..+++|++|++++| .+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 366888888888877 566667777888888888877 44433 444444667777777777765566666667777777
Q ss_pred EcccccCccc-CchhccCCCCCCeeeccCCcccccCC---cCccCCCCCCEEEcc
Q 037786 113 HLSQCNFYGF-LPASLGNVTQLAVLSLSFKSFSGHIP---PSLSNLHQLTDVDLG 163 (565)
Q Consensus 113 ~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~ 163 (565)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776653 23556667777777777776664433 356666667666654
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=9e-14 Score=121.32 Aligned_cols=125 Identities=18% Similarity=0.081 Sum_probs=80.2
Q ss_pred CeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc---cCC
Q 037786 394 KYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISW 470 (565)
Q Consensus 394 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~ 470 (565)
+.++++++.+.......++++++|++++|++++..+..+..+ ++|++|++++|.+..++. ..+
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--------------TQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTC--------------TTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCc--------------ccccEEECCCCcceEeChhHccCC
Confidence 345555555443333334556666666666655444445555 677777777777776632 456
Q ss_pred CcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccC
Q 037786 471 KNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTI 532 (565)
Q Consensus 471 ~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 532 (565)
++|+.|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 6777777777777653332 5677888888888887666666777888888888888887653
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.4e-14 Score=122.61 Aligned_cols=125 Identities=22% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCCcEEEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 83 SPLRCLDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 83 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 34455555555556666555555543 4455555555555555555544444444455555555
Q ss_pred ccCccccccC--cCCcCCCCCCEEeccCCcccccCC---CCCcCCCCCCEEEc
Q 037786 162 LGSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIP---SHGSGLQNLAVLRL 209 (565)
Q Consensus 162 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 209 (565)
+++|.+.+.. ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555554322 234445555555555554443222 23344444444444
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=1.9e-12 Score=127.80 Aligned_cols=266 Identities=11% Similarity=0.100 Sum_probs=202.2
Q ss_pred hhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCC
Q 037786 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 31 ~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (565)
...+..++.+.+.+. ++.+...+|.++ +|+.+.+..+ +...........+|+.+.+.. .++.....+|.+|++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCC
Confidence 334478899998765 666777888886 7999999865 443333333346899999986 56656678899999999
Q ss_pred EEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCc
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQ 189 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 189 (565)
.+++.++.++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ +..+... |.. .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 999999998888778887 589999999854 66667778999999999999875 4444444 555 789999994 45
Q ss_pred ccccCCCCCcCCCCCCEEEccccccc-----CCCchhhcCCCCCCEEEccCCcccccCC--CCCCCCCcEEEccCCcccc
Q 037786 190 LTGSIPSHGSGLQNLAVLRLYNNTLS-----GTIPSWLFTLPLLRDIDLSDNQLTGHLD--AFPSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~ 262 (565)
+..+....|..|++|+.+++.++.+. ......|..|++|+.+.+..+ +..... ...+.+|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 66677888999999999999887654 345678899999999999854 443322 236789999999655 554
Q ss_pred CCchhhhcCCCcCccccccccccCccChHhhhcCC-CCCEEEccCCccc
Q 037786 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV-NLAALELSHNSLS 310 (565)
Q Consensus 263 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~-~L~~L~l~~~~i~ 310 (565)
....+|.++ +|+.+.+.+|..... ....|.+++ .+..+.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l-~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQV-FEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBC-CCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCccc-ccccccCCCCCccEEEeCHHHHH
Confidence 556788888 999999999987643 345677774 7889999877553
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=8e-14 Score=134.80 Aligned_cols=223 Identities=13% Similarity=0.074 Sum_probs=144.6
Q ss_pred HHHhhC--------CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCC--C
Q 037786 3 EALVQN--------VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN--L 72 (565)
Q Consensus 3 ~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~--~ 72 (565)
+.+|.+ |++|++|+++. .+..+...+|.++ ++|+.++++++.+....+.+|..+.++..+....... .
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~-~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC-DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC-TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC-cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc
Confidence 456677 88888888888 7777888888887 8888888888887777778888887777776654210 0
Q ss_pred CccCC--CCCCCCCCc-EEEccCCccCccCCccc----cCCCCCCEEEcccccCcccCchhc-cCCCCCCeeeccCCccc
Q 037786 73 SGVFP--RSNWTSPLR-CLDVSGTRFSGQLPDSI----CNLRHLRELHLSQCNFYGFLPASL-GNVTQLAVLSLSFKSFS 144 (565)
Q Consensus 73 ~~~~~--~~~~~~~L~-~L~l~~~~~~~~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~ 144 (565)
...+. .+..+..|+ .+.+.... .++..+ ....+++.+.+.+.- .......+ ..+++|+.+++.+|.++
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNAT 239 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCC
T ss_pred cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcc
Confidence 00111 111223444 33333221 111111 123445555555432 11212222 23778888888888777
Q ss_pred ccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCC-EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhh
Q 037786 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRIS-RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWL 222 (565)
Q Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 222 (565)
.....+|.++++|+.+++.++ +..+... |.++++|+ .+++.. .++.+.+..|.+|++|+.+++..+.+.......|
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 666677888888888888876 5555544 77888888 888877 6666677788888888888888888876667788
Q ss_pred cCCCCCCEEEc
Q 037786 223 FTLPLLRDIDL 233 (565)
Q Consensus 223 ~~~~~L~~L~l 233 (565)
.++++|+.+..
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 88888887753
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.6e-14 Score=154.00 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=64.8
Q ss_pred cCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCC
Q 037786 98 QLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNL 177 (565)
Q Consensus 98 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 177 (565)
..+..|..++.|+.|+|++|.+. ..+..+.++++|++|+|++|.++ .+|..+..+++|+.|++++|.+..++..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34455555566666666666555 23333445566666666666555 45555555666666666666655444445556
Q ss_pred CCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhh
Q 037786 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWL 222 (565)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 222 (565)
++|+.|++++|.+. .+|..|..+++|+.|++++|.+.+..+..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666666666555 344455556666666666666554444433
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.1e-14 Score=155.17 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=76.4
Q ss_pred cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccC
Q 037786 50 EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGN 129 (565)
Q Consensus 50 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 129 (565)
..+..+..++.|+.|+|++| .+.........+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ ..|..|.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666666666666666 33333333334466666666666666 55666666666666666666665 44556666
Q ss_pred CCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCC-CCCEEeccCCcccccCCCCCcCCCCCCEE
Q 037786 130 VTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLT-RISRLDISNNQLTGSIPSHGSGLQNLAVL 207 (565)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 207 (565)
+++|++|++++|.++ .+|..|..+++|+.|++++|.+.+..+. +.... .+..+++++|.+.+..|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 666666666666665 4555566666666666666666544333 22111 111244555555543332 34455
Q ss_pred Ecccc
Q 037786 208 RLYNN 212 (565)
Q Consensus 208 ~l~~~ 212 (565)
+++.|
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 55544
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.5e-12 Score=114.85 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=71.9
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.++ ..|..|.++++|+.|++++|.+++..+.+|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 344433 245666666666655 33455666666666666666666555555666666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+....+. +..+++|+.|++++|.+....+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555443 555566666666666655444444555566666666666554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=1.7e-12 Score=113.18 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=74.8
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555565555 334322 246666666666666555555666666666666666666444445566666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG 216 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 216 (565)
.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66554444 4556666666666666654444445556666666666665543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.42 E-value=1.1e-11 Score=122.95 Aligned_cols=304 Identities=11% Similarity=0.004 Sum_probs=217.7
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT 82 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 82 (565)
+.+|.+|++|+.+++..+ +..+...+|..+ .+|+.+.+..+ +......+|.++..++....... ..-....+..+
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c-~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c 161 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGC-YALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATC 161 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTC-TTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC
T ss_pred hhHhhCCCCCcEEEeCCC-ceEccchhhccc-ccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhccc
Confidence 568999999999999765 667778889888 88998888665 55466778888765554443332 12223345556
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
.+|+.+.+..+... ....+|.++.+|+.+.+..+ ++.....+|.++..|+.+.+..+... +.........|+.+.+
T Consensus 162 ~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 162 ESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIII 237 (394)
T ss_dssp TTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEE
T ss_pred CCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEE
Confidence 89999999765433 55678899999999999765 56677788999999999988776543 2333445678999988
Q ss_pred cCccccccCc-CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccccc
Q 037786 163 GSNSFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 163 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
.... ..... .+..+..++.+.+..+... .....|..+..++.+......+. ...+..+.+|+.+.+..+ +...
T Consensus 238 p~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 238 PDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEE
T ss_pred CCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-ccee
Confidence 7543 32333 3788999999999876544 66778889999999988776543 346788999999999765 3322
Q ss_pred --CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccC
Q 037786 242 --LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS 319 (565)
Q Consensus 242 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 319 (565)
.....+.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ +. .+...+|.+|.+|+.+++..+- ... ...+.
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~-~~~--~~~F~ 385 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL-EQY--RYDFE 385 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG-GGG--GGGBC
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC-EEh--hheec
Confidence 22336789999999754 55455678889999999999876 43 4556789999999999997652 211 12246
Q ss_pred CCCCccEE
Q 037786 320 SFPQIFIL 327 (565)
Q Consensus 320 ~~~~L~~L 327 (565)
.+++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 66777654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=6.8e-13 Score=115.51 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=71.9
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCc
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLR 86 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 86 (565)
.++++|++|++++|.+..+. .+..+.++|++|++++|.+++. ..+..+++|++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~L-------------------- 71 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV-------------------- 71 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEEC--------------------
T ss_pred CCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEEC--------------------
Confidence 34555555666655555431 2334434555555555555532 34444555555554
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCc----CccCCCCCCEEE
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPP----SLSNLHQLTDVD 161 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~ 161 (565)
++|.++...+..|..+++|++|++++|.+..... ..+..+++|+.|++++|.+.. .+. .+..+++|+.|+
T Consensus 72 ----s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 72 ----NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp ----CSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred ----CCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeC
Confidence 4555553333334566666666666666643221 255666666666666666652 333 256666677776
Q ss_pred ccCcccc
Q 037786 162 LGSNSFD 168 (565)
Q Consensus 162 l~~~~~~ 168 (565)
+++|...
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 6666543
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=8.8e-11 Score=116.43 Aligned_cols=293 Identities=12% Similarity=0.092 Sum_probs=142.2
Q ss_pred HHHhhCCC-CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCc---ccccCCccccCCCCCCEEecCCCCCCCccCCC
Q 037786 3 EALVQNVT-KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCR---IQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR 78 (565)
Q Consensus 3 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~---i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 78 (565)
+.+|.+++ .|+++.+..+ ++.+...+|.++ .+|+.+.+..+. ++.....+|..|..|+.+.+..+ ...-....
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 34666664 4777777643 555666677776 777777776542 44445566777777776666543 11112222
Q ss_pred CCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCC
Q 037786 79 SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLT 158 (565)
Q Consensus 79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (565)
+..+.+|+.+.+.... .......|..+..|+.+.+..+ ++.....+|.+ ..|+.+.+...... ....+|..+..++
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence 3334666666665432 2234455666666666666543 34344445543 45666666543222 3344556666666
Q ss_pred EEEccCccccccCcC--------------CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcC
Q 037786 159 DVDLGSNSFDGQFPD--------------IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT 224 (565)
Q Consensus 159 ~L~l~~~~~~~~~~~--------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 224 (565)
............... +.....+..+.+.. .+.......|..+..|+.+.+..+... .....|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence 655444332211100 11112233333322 122233445556666666666543322 33345555
Q ss_pred CCCCCEEEccCCccccc--CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEE
Q 037786 225 LPLLRDIDLSDNQLTGH--LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAAL 302 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L 302 (565)
++.|+.+.+... +... .....+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++ .+...+|.+|.+|+.+
T Consensus 287 c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEE
T ss_pred ccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEE
Confidence 666666665432 2111 11123445555555433 22233334555555555555432 22 2333455555555555
Q ss_pred EccCCc
Q 037786 303 ELSHNS 308 (565)
Q Consensus 303 ~l~~~~ 308 (565)
++.++.
T Consensus 363 ~~~~~~ 368 (394)
T 4gt6_A 363 EYSGSR 368 (394)
T ss_dssp EESSCH
T ss_pred EECCce
Confidence 555543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=7.9e-13 Score=115.12 Aligned_cols=14 Identities=7% Similarity=-0.156 Sum_probs=6.6
Q ss_pred cCCCCCCEEecCCC
Q 037786 56 FRLSNLQMVRLKFN 69 (565)
Q Consensus 56 ~~l~~L~~L~L~~~ 69 (565)
..+++|++|++++|
T Consensus 16 ~~~~~L~~L~l~~n 29 (176)
T 1a9n_A 16 TNAVRDRELDLRGY 29 (176)
T ss_dssp ECTTSCEEEECTTS
T ss_pred CCcCCceEEEeeCC
Confidence 34444455444444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=1.9e-14 Score=128.17 Aligned_cols=119 Identities=22% Similarity=0.211 Sum_probs=78.8
Q ss_pred CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCC
Q 037786 411 PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~ 488 (565)
+++|++|++++|++++ .+ .+..+ ++|++|++++|.+..+|. ..+++|+.|++++|.+++ ++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l--------------~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~ 109 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGM--------------ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS 109 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHH--------------TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH
T ss_pred CCCCCEEECCCCCCcc-cc-ccccC--------------CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC
Confidence 5667777777776665 33 55555 677777777777776644 445677777777777665 22
Q ss_pred C--CCCCCcEeeccCceeeeccc-hhhhcCCCCCEEeCCCCcCcccCCCC----------CCCCCCCcccc
Q 037786 489 V--PPSSLRVILILNNQFTGEII-HSICDIIALDVLDLSNNRLSGTIPKC----------IGNFSPWCQTK 546 (565)
Q Consensus 489 ~--~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~p~~----------l~~l~~L~~l~ 546 (565)
. .+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+.+|+. +..+++|+.|+
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 2 56677777777777765332 45677777777777777777665553 56677777776
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=6.2e-14 Score=137.04 Aligned_cols=132 Identities=19% Similarity=0.058 Sum_probs=77.2
Q ss_pred CCCCeEEcCCCcccccCC----CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 391 KNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 391 ~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
++|++|++++|.+..... ..+++|++|++++|++++.....++..- ....++|++|++++|.+++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L---------~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL---------LHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH---------HSTTCCCCEEECCSSCCHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH---------HhcCCccceeeCCCCCCChHH
Confidence 455555555555543211 1144667777777777655555553220 001156777777777776531
Q ss_pred c-------cCCCcccEEECCCCcccccC-------CCCCCCCcEeeccCceeeecc----chhhhcCCCCCEEeCCCCcC
Q 037786 467 Q-------ISWKNLGYLDLRSNLLQGPL-------LVPPSSLRVILILNNQFTGEI----IHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 467 ~-------~~~~~L~~L~ls~n~l~~~~-------~~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~ 528 (565)
. ..+++|+.|++++|.+.+.. ....++|++|++++|.+++.. ...+...++|++|+|++|++
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 1 44667777777777775311 114567778888888776543 33445567788888888887
Q ss_pred ccc
Q 037786 529 SGT 531 (565)
Q Consensus 529 ~~~ 531 (565)
...
T Consensus 252 ~~~ 254 (372)
T 3un9_A 252 SSE 254 (372)
T ss_dssp CHH
T ss_pred CHH
Confidence 644
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=3.5e-14 Score=126.42 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=73.8
Q ss_pred cccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCC
Q 037786 54 NIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQL 133 (565)
Q Consensus 54 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 133 (565)
.+..+++|++|++++| .+.+ ++.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++. + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCC-CCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 4444444444444444 2222 222222255555555555555 4555555666777777777776653 2 56667777
Q ss_pred CeeeccCCcccccCC-cCccCCCCCCEEEccCccccccCcC-----------CcCCCCCCEEeccCCccc
Q 037786 134 AVLSLSFKSFSGHIP-PSLSNLHQLTDVDLGSNSFDGQFPD-----------IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 134 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~L~~L~l~~~~~~ 191 (565)
++|++++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|+ ++.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777663221 3566677777777777776544322 55677777775 44443
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=1.8e-09 Score=106.96 Aligned_cols=130 Identities=8% Similarity=0.039 Sum_probs=53.1
Q ss_pred CccccCCCCCCEEEccccc---CcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCc-CCc
Q 037786 100 PDSICNLRHLRELHLSQCN---FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIM 175 (565)
Q Consensus 100 ~~~~~~l~~L~~L~L~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 175 (565)
..+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+.... ..... .+.
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~ 157 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFS 157 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTT
T ss_pred HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeeccccee
Confidence 3444445555555444331 33333444555555554444332 222333344455555555554322 11211 144
Q ss_pred CCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEcc
Q 037786 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLS 234 (565)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 234 (565)
.+..|+.+.+..+ +..+....|.. ..|+.+.+..+-.. .....+..+..+......
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSD 213 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEEC
T ss_pred cccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccc
Confidence 4555555555432 22222333332 34555554433211 223344445555444443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=5.7e-13 Score=130.21 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCCcEEEccccccCccchhhh----hhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c------cCCCcccEEECC
Q 037786 411 PPRLQFLLASNNQFTGEIIQSI----CSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q------ISWKNLGYLDLR 479 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~ls 479 (565)
.++|++|++++|.+++.....+ ... ++|++|+|++|.+.+.. . ..+++|+.|+++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~--------------~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGN--------------TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTC--------------SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcC--------------CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 3556666666666654333333 333 66777777777766541 0 345577777777
Q ss_pred CCcccccCC----C---CCCCCcEeeccCceeeeccchhhhcCCC-----CCEEe--CCCCcCc
Q 037786 480 SNLLQGPLL----V---PPSSLRVILILNNQFTGEIIHSICDIIA-----LDVLD--LSNNRLS 529 (565)
Q Consensus 480 ~n~l~~~~~----~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~-----L~~L~--l~~n~~~ 529 (565)
+|.+++... . ..++|++||+++|.+++.....++.+.. |+.+. +.+|.+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 777754211 1 4467788888888877666555544421 55666 5555554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=7.6e-11 Score=101.61 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=45.5
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34444444444 233332 244555555555554444444445555555555555544333334444444444444444
Q ss_pred cccccCcC-CcCCCCCCEEeccCCc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQ 189 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~ 189 (565)
.+....+. +..+++|+.|++++|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 44433332 3344444444444443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=1.3e-10 Score=100.07 Aligned_cols=106 Identities=21% Similarity=0.205 Sum_probs=79.9
Q ss_pred CEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC
Q 037786 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK 141 (565)
Q Consensus 62 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 141 (565)
++++++++ .+....... .+.+++|++++|.+++..|..|..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555 333222111 266777777788888777788888899999999999888777777888999999999999
Q ss_pred cccccCCcCccCCCCCCEEEccCcccccc
Q 037786 142 SFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
.+.+..+..|..+++|+.|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88876666788889999999999887643
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=1.3e-10 Score=100.40 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEec
Q 037786 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDI 185 (565)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 185 (565)
++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+....+. +..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4444444444444444444444444444444444444433233334444444444444444333332 333333333333
Q ss_pred cCC
Q 037786 186 SNN 188 (565)
Q Consensus 186 ~~~ 188 (565)
++|
T Consensus 113 ~~N 115 (174)
T 2r9u_A 113 YNN 115 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 333
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=2.4e-10 Score=98.83 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
+.|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 66777777777887676778888888999999988888777777788889999999999888655556888889999999
Q ss_pred cCccccccC
Q 037786 163 GSNSFDGQF 171 (565)
Q Consensus 163 ~~~~~~~~~ 171 (565)
++|.+....
T Consensus 113 ~~N~~~c~~ 121 (174)
T 2r9u_A 113 YNNPWDCEC 121 (174)
T ss_dssp CSSCBCTTB
T ss_pred CCCCccccc
Confidence 988876433
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=1.4e-08 Score=100.09 Aligned_cols=287 Identities=11% Similarity=0.044 Sum_probs=156.0
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
.+|+.+.+... ++.+...+|.+|.+|+.+.+..+ .......+....+|+.+.+..+ ++.....+|..+ +|+.+.+
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECCce-eeEeccceeccC-CcccccC
Confidence 66777777553 66566677777888888877643 3322222223346666666433 332334455544 6777777
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccccc-------------CcCCcCCCCCC
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ-------------FPDIMNLTRIS 181 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~~~~~~L~ 181 (565)
..+ +......+|.+. +++...+..+ ++.....++..+..++.+.+........ ...+.....+.
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 643 333444455544 4555544433 3333445566667777666554332110 01133444555
Q ss_pred EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc--cCCCCCCCCCcEEEccCCc
Q 037786 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG--HLDAFPSKSLRKLYLTNNR 259 (565)
Q Consensus 182 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~ 259 (565)
.+.+..... ......+..+..++.+.+..+ +.......+..+..|+.+.+..+ +.. ......+..++.+.+...
T Consensus 198 ~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 198 EFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp EEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred cccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 555544322 234455666677777776544 22234456667777777777654 221 122225566777776543
Q ss_pred cccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC
Q 037786 260 LHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF 337 (565)
Q Consensus 260 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l 337 (565)
+.......+..|.+|+.+.+.++.+. .+...+|.+|.+|+.+.+..+ ++...... +..+.+|+.+.+..+ ++.+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-F~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYA-FKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT-TTTCTTCCCCCCCTT-CCEE
T ss_pred ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHH-hhCCCCCCEEEECCc-cCEE
Confidence 33234446667777888877766654 334467777788888877643 33332222 366677777766543 4433
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=2.2e-08 Score=98.64 Aligned_cols=290 Identities=10% Similarity=0.075 Sum_probs=175.6
Q ss_pred HhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCC
Q 037786 5 LVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSP 84 (565)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 84 (565)
++....+|+.+.+.. .++.+...+|.++ .+|+.+.+..+ ++.+...+|.++ .|+.+.+..+ .......+....+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C-~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSC-YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCC-CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCC
Confidence 345566788888764 3566677778877 78888888654 655666777776 5777766543 3333333333367
Q ss_pred CcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc------------cCCcCcc
Q 037786 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG------------HIPPSLS 152 (565)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~ 152 (565)
|+.+.+..+- +......|.++ +++...+.. .++.....+|..+..++...+....... .....+.
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCcc-ccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 8888876542 22334445554 455555543 2444555667777777776665433210 1112334
Q ss_pred CCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEE
Q 037786 153 NLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDID 232 (565)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 232 (565)
....+..+.+...........+..+..|+.+.+..+ +.......+..+..|+.+.+..+ +.......|..+.+|+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 445566665554433222233666777777777554 33355566777788888887665 4334455677778888887
Q ss_pred ccCCccc-ccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCC
Q 037786 233 LSDNQLT-GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307 (565)
Q Consensus 233 l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~ 307 (565)
+..+--. +......+.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+
T Consensus 270 l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 270 FYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred ccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 7654211 1222236677888888777766555667888888888888654 32 344567888888888888654
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=3.6e-10 Score=110.09 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=66.1
Q ss_pred eEEcCCC-cccccCCCC--CCCCcEEEccc-cccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--
Q 037786 395 YLKLQSN-LLQGPLPVP--PPRLQFLLASN-NQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ-- 467 (565)
Q Consensus 395 ~L~l~~n-~~~~~~~~~--~~~L~~L~l~~-n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~-- 467 (565)
.++++++ .+.. +|.. +++|++|+|++ |.+++..+..+..+ ++|++|+|++|.|+.+ |.
T Consensus 12 ~v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l--------------~~L~~L~l~~N~l~~~~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGL--------------GELRNLTIVKSGLRFVAPDAF 76 (347)
T ss_dssp CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSC--------------CCCSEEECCSSCCCEECTTGG
T ss_pred EEEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCCCcChhHhccc--------------cCCCEEECCCCccceeCHHHh
Confidence 4566665 5554 2322 34566677764 66666555556555 6666777777766666 32
Q ss_pred cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCcccCCC
Q 037786 468 ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 468 ~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~p~ 534 (565)
..+++|+.|+|++|.+++..+. ....|+.|++.+|.+...- ...|..........+..+..+|.-|.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 5566666666666666653222 1122666666666664221 12233322222333344455555554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=6.6e-09 Score=101.07 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=62.4
Q ss_pred EEccCC-ccCccCCccccCCCCCCEEEccc-ccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 88 LDVSGT-RFSGQLPDSICNLRHLRELHLSQ-CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 88 L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
++++++ .++ .+|. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|.+.+..+..|..+++|+.|++++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3555 66666667777764 6666666666666666777777666666666666666666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~ 191 (565)
.+...++. +..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66655544 22233 666666665544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=3.3e-09 Score=102.60 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCcccEEECCCCcccccCC------CCCCCCcEeeccCceeeecc----chhhhcCCCCCEEeCCCCcCc
Q 037786 470 WKNLGYLDLRSNLLQGPLL------VPPSSLRVILILNNQFTGEI----IHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 470 ~~~L~~L~ls~n~l~~~~~------~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 529 (565)
+|+|+.|++++|.+.+..+ ..+++|++|+++.|.+++.. +.++..+++|+.|++++|.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5555555555555542111 13455666666555555432 223344556666666665554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1e-08 Score=99.22 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCc
Q 037786 491 PSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNR 527 (565)
Q Consensus 491 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 527 (565)
+++|+.|++++|.+++...+.+...- ...+++++++
T Consensus 306 l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 306 IKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 46666777777766655555554411 3557777776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=3.3e-08 Score=86.16 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=62.2
Q ss_pred CCCCcEEEcccc-ccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c------cCCCcccEEECCCCc
Q 037786 411 PPRLQFLLASNN-QFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q------ISWKNLGYLDLRSNL 482 (565)
Q Consensus 411 ~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~ls~n~ 482 (565)
.+.|++|++++| .+.+.....++.. + ...++|++|+|++|.+.+.. . ...++|++|++++|.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~--------L--~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEA--------L--KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHH--------H--TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHH--------H--HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 455556666665 5554433333221 0 00156666666666665431 1 334566677777776
Q ss_pred ccccC-------CCCCCCCcEeec--cCceeeecc----chhhhcCCCCCEEeCCCCcCc
Q 037786 483 LQGPL-------LVPPSSLRVILI--LNNQFTGEI----IHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 483 l~~~~-------~~~~~~L~~L~l--~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 529 (565)
+.+.- ....++|++|++ ++|.+++.. .+.+...++|++|+|++|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 65311 114567778888 777776653 345566688888888888775
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=8.9e-08 Score=83.42 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=16.5
Q ss_pred CCccEEEccCC-ccccc----CCccccCCCCCCEEecCCC
Q 037786 35 SSLTSLSLSYC-RIQGE----FPENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 35 ~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~L~~~ 69 (565)
++|++|++++| .++.. +...+...++|++|+|++|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 44555555555 44421 2233344455555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=2.1e-07 Score=85.16 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=18.4
Q ss_pred CCCcEEeCcCCCCCCCcc-----cCCCcccEEECCCCcccc
Q 037786 450 DSLSYLNLSHNFITKMKQ-----ISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~ls~n~l~~ 485 (565)
++|++|+|++|.+.+++. ..+++|+.|++++|.+++
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 555555555555555421 244555555555555543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=4.8e-07 Score=76.55 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=57.9
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEccccc-CcccCchhccCC----CCCCeeeccCCc-ccccCCcCccCCCC
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN-FYGFLPASLGNV----TQLAVLSLSFKS-FSGHIPPSLSNLHQ 156 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~ 156 (565)
..|++||+++|.++......+..|++|++|+|++|. +++.....+..+ ++|++|++++|. +++.-...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777776655667778888888888875 666555556554 468888888774 66443345566777
Q ss_pred CCEEEccCcc
Q 037786 157 LTDVDLGSNS 166 (565)
Q Consensus 157 L~~L~l~~~~ 166 (565)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=8.1e-07 Score=75.15 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=45.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCC----CCCCE
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNL----RHLRE 111 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l----~~L~~ 111 (565)
+|++|++++|.|++.....+..|++|++|+|++|.. +++.....+..+ ++|++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~-----------------------ItD~gL~~L~~~~~~~~~L~~ 118 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY-----------------------IEDGCLERLSQLENLQKSMLE 118 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT-----------------------CCHHHHHHHHTCHHHHHHCCE
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc-----------------------cCHHHHHHHHhcccccCCCCE
Confidence 456666666665554445555555555555555532 333222333332 35666
Q ss_pred EEccccc-CcccCchhccCCCCCCeeeccCCc
Q 037786 112 LHLSQCN-FYGFLPASLGNVTQLAVLSLSFKS 142 (565)
Q Consensus 112 L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 142 (565)
|++++|. +++.....+.++++|+.|++++|.
T Consensus 119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 6666654 555545555566666666666653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=9.3e-06 Score=74.23 Aligned_cols=61 Identities=30% Similarity=0.225 Sum_probs=41.7
Q ss_pred CCCCcEEEccccccCc--cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCC--cccEEECCCCcccc
Q 037786 411 PPRLQFLLASNNQFTG--EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWK--NLGYLDLRSNLLQG 485 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~--~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~L~~L~ls~n~l~~ 485 (565)
+++|++|+|++|+|++ .++..+..+ ++|+.|+|++|.+.++ ....+. +|++|++++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l--------------~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKA--------------PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHS--------------TTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhC--------------CCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 5677777777777776 334555666 8888888888888877 323333 66667666666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.94 E-value=4.9e-06 Score=67.22 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=55.9
Q ss_pred cEEECCCCccc-ccCCC-CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCC
Q 037786 474 GYLDLRSNLLQ-GPLLV-PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRW 551 (565)
Q Consensus 474 ~~L~ls~n~l~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~ 551 (565)
..++.+++.++ ..+|. .+++|++|+|++|.|+...+..|..+++|+.|+|++|++.|. |.+.|...|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd-----------C~l~~l~~w 79 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD-----------CRLVPLRAW 79 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS-----------GGGHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc-----------CccHHHHHH
Confidence 46777777776 23554 566788888888888877778889999999999999999987 777777777
Q ss_pred cccc
Q 037786 552 SATT 555 (565)
Q Consensus 552 ~~~~ 555 (565)
+...
T Consensus 80 l~~~ 83 (130)
T 3rfe_A 80 LAGR 83 (130)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 6543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=3e-05 Score=66.81 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCCcEEeCcCCCCCCC-cc------cCCCcccEEECCCCccccc-------CCCCCCCCcEeeccCc---eeeec----c
Q 037786 450 DSLSYLNLSHNFITKM-KQ------ISWKNLGYLDLRSNLLQGP-------LLVPPSSLRVILILNN---QFTGE----I 508 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~-~~------~~~~~L~~L~ls~n~l~~~-------~~~~~~~L~~L~l~~n---~~~~~----~ 508 (565)
..|++|+|++|.|.+. .. .....|+.|++++|.|.+. ....-++|++|++++| .+++. +
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 5666666666666654 11 2345667777777766531 1114456777777654 44432 4
Q ss_pred chhhhcCCCCCEEeCCCCcC
Q 037786 509 IHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 509 ~~~l~~~~~L~~L~l~~n~~ 528 (565)
.+.+...++|++|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 45667778888888876654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=0.00016 Score=62.39 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=16.7
Q ss_pred CCccEEEccCC-ccccc----CCccccCCCCCCEEecCCC
Q 037786 35 SSLTSLSLSYC-RIQGE----FPENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 35 ~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~L~~~ 69 (565)
+.|++|+|+++ .|... +.+++.....|+.|+|++|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 80 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC
Confidence 44555555553 44421 2333444455555555555
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.21 E-value=0.0097 Score=47.64 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=5.0
Q ss_pred CcccEEECCCCc
Q 037786 471 KNLGYLDLRSNL 482 (565)
Q Consensus 471 ~~L~~L~ls~n~ 482 (565)
++|+.|+|++|.
T Consensus 55 ~~L~~L~L~~NP 66 (130)
T 3rfe_A 55 PALRTAHLGANP 66 (130)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEEecCCC
Confidence 344444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.83 E-value=6.5 Score=29.21 Aligned_cols=49 Identities=6% Similarity=-0.056 Sum_probs=37.2
Q ss_pred CCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCC
Q 037786 19 YVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~ 69 (565)
+..++.+...+|.++ .+|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c-~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGN-TVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTC-TTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCC-CCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445667777888887 88888888765 55566778888888888888764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.49 E-value=15 Score=27.14 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=24.7
Q ss_pred cCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccC
Q 037786 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSF 140 (565)
Q Consensus 95 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (565)
++.....+|.+|.+|+.+.+-.+ ++.+...+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455666666666666532 4445555666666666666554
Done!