Query 037787
Match_columns 163
No_of_seqs 138 out of 1197
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 04:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.9E-29 4.1E-34 158.7 17.5 148 5-156 10-157 (160)
2 KOG0027 Calmodulin and related 100.0 4.3E-27 9.4E-32 150.5 18.3 147 9-155 2-149 (151)
3 PTZ00183 centrin; Provisional 99.9 9.3E-25 2E-29 141.0 19.0 151 4-157 6-156 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 5.3E-24 1.2E-28 131.5 16.6 150 4-156 22-171 (172)
5 PTZ00184 calmodulin; Provision 99.9 8E-24 1.7E-28 135.3 17.8 146 7-155 3-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 1.3E-22 2.8E-27 124.6 16.6 142 7-155 24-165 (171)
7 KOG0030 Myosin essential light 99.9 3.1E-22 6.7E-27 121.0 13.8 146 7-154 3-150 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.8 1.7E-19 3.6E-24 117.5 15.3 143 7-156 25-176 (187)
9 KOG0037 Ca2+-binding protein, 99.8 1.8E-18 3.9E-23 112.6 15.2 132 14-155 56-188 (221)
10 KOG0036 Predicted mitochondria 99.8 1.8E-17 3.9E-22 116.9 15.6 142 7-157 6-148 (463)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.8 6.2E-17 1.3E-21 105.7 14.4 144 6-155 20-175 (193)
12 KOG4223 Reticulocalbin, calume 99.6 3E-14 6.5E-19 98.1 10.5 141 12-152 160-302 (325)
13 PLN02964 phosphatidylserine de 99.6 1.6E-13 3.5E-18 104.2 14.6 105 7-119 135-243 (644)
14 KOG4223 Reticulocalbin, calume 99.6 6E-14 1.3E-18 96.6 10.4 144 14-157 76-230 (325)
15 PF13499 EF-hand_7: EF-hand do 99.5 3.3E-13 7.2E-18 74.4 7.8 62 92-153 1-66 (66)
16 cd05022 S-100A13 S-100A13: S-1 99.5 4.8E-13 1E-17 77.4 7.7 68 90-157 7-77 (89)
17 KOG0027 Calmodulin and related 99.4 4.5E-12 9.7E-17 81.2 11.3 103 50-156 7-114 (151)
18 KOG0037 Ca2+-binding protein, 99.4 4.4E-12 9.6E-17 83.1 10.2 86 14-109 123-208 (221)
19 PF13499 EF-hand_7: EF-hand do 99.4 2.4E-12 5.2E-17 70.9 7.6 62 16-77 1-66 (66)
20 KOG0044 Ca2+ sensor (EF-Hand s 99.4 4.6E-12 1E-16 83.0 10.1 105 15-119 64-175 (193)
21 cd05027 S-100B S-100B: S-100B 99.4 3.9E-12 8.4E-17 73.7 8.7 68 90-157 7-81 (88)
22 PTZ00183 centrin; Provisional 99.4 3.1E-11 6.7E-16 77.7 12.8 101 51-155 17-118 (158)
23 KOG0038 Ca2+-binding kinase in 99.4 4.7E-11 1E-15 73.5 12.1 142 9-157 22-179 (189)
24 smart00027 EH Eps15 homology d 99.4 1.5E-11 3.3E-16 72.7 9.1 72 7-80 2-73 (96)
25 cd05022 S-100A13 S-100A13: S-1 99.3 9E-12 1.9E-16 72.1 7.9 69 12-80 5-76 (89)
26 cd05027 S-100B S-100B: S-100B 99.3 2E-11 4.4E-16 70.7 8.8 69 12-80 5-80 (88)
27 cd05029 S-100A6 S-100A6: S-100 99.3 1.9E-11 4.2E-16 70.8 8.4 67 91-157 10-81 (88)
28 COG5126 FRQ1 Ca2+-binding prot 99.3 1.2E-10 2.7E-15 73.9 12.0 100 52-156 21-121 (160)
29 PTZ00184 calmodulin; Provision 99.3 1.4E-10 3E-15 73.9 12.3 101 52-156 12-113 (149)
30 cd05031 S-100A10_like S-100A10 99.3 3.9E-11 8.5E-16 70.7 8.3 68 90-157 7-81 (94)
31 PF13833 EF-hand_8: EF-hand do 99.3 4.1E-11 8.8E-16 63.2 7.3 52 104-155 1-53 (54)
32 cd05025 S-100A1 S-100A1: S-100 99.3 6.9E-11 1.5E-15 69.3 8.7 68 90-157 8-82 (92)
33 KOG0377 Protein serine/threoni 99.3 1.3E-10 2.9E-15 83.5 11.5 139 15-155 464-615 (631)
34 cd05026 S-100Z S-100Z: S-100Z 99.2 9.9E-11 2.1E-15 68.7 8.2 67 91-157 10-83 (93)
35 KOG0034 Ca2+/calmodulin-depend 99.2 2.9E-10 6.2E-15 74.5 10.6 104 17-120 68-176 (187)
36 cd05025 S-100A1 S-100A1: S-100 99.2 2.6E-10 5.6E-15 66.9 9.0 69 13-81 7-82 (92)
37 smart00027 EH Eps15 homology d 99.2 2.2E-10 4.7E-15 67.7 8.7 66 89-156 8-73 (96)
38 KOG2562 Protein phosphatase 2 99.2 3E-10 6.4E-15 82.1 10.8 136 9-151 272-420 (493)
39 cd00052 EH Eps15 homology doma 99.2 2E-10 4.2E-15 63.3 7.8 61 94-156 2-62 (67)
40 cd00213 S-100 S-100: S-100 dom 99.2 2.1E-10 4.7E-15 66.7 8.3 70 11-80 4-80 (88)
41 cd05031 S-100A10_like S-100A10 99.2 2.3E-10 5E-15 67.4 8.4 68 13-80 6-80 (94)
42 cd05029 S-100A6 S-100A6: S-100 99.2 3E-10 6.5E-15 65.8 8.5 69 12-80 7-80 (88)
43 cd05026 S-100Z S-100Z: S-100Z 99.2 3.8E-10 8.2E-15 66.2 9.0 69 13-81 8-83 (93)
44 PF14658 EF-hand_9: EF-hand do 99.2 2E-10 4.3E-15 61.7 7.0 61 95-155 2-64 (66)
45 KOG0040 Ca2+-binding actin-bun 99.2 8.9E-10 1.9E-14 88.9 12.8 141 3-153 2241-2396(2399)
46 cd05023 S-100A11 S-100A11: S-1 99.2 4.6E-10 9.9E-15 65.2 8.4 68 90-157 8-82 (89)
47 cd00213 S-100 S-100: S-100 dom 99.2 3.1E-10 6.8E-15 66.0 7.8 68 90-157 7-81 (88)
48 KOG0028 Ca2+-binding protein ( 99.2 1.4E-09 3.1E-14 68.0 10.9 102 50-155 32-134 (172)
49 cd00051 EFh EF-hand, calcium b 99.2 4.1E-10 8.9E-15 60.7 7.6 61 93-153 2-62 (63)
50 PLN02964 phosphatidylserine de 99.1 1E-09 2.3E-14 83.9 11.8 119 31-156 120-244 (644)
51 PF13833 EF-hand_8: EF-hand do 99.1 3.8E-10 8.3E-15 59.5 6.8 51 28-78 1-52 (54)
52 cd00052 EH Eps15 homology doma 99.1 3.9E-10 8.4E-15 62.1 6.8 60 18-79 2-61 (67)
53 cd00051 EFh EF-hand, calcium b 99.1 9.2E-10 2E-14 59.3 7.5 61 17-77 2-62 (63)
54 cd05023 S-100A11 S-100A11: S-1 99.0 4.2E-09 9.1E-14 61.1 8.9 69 12-80 6-81 (89)
55 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.4E-09 5.2E-14 65.0 7.7 63 89-155 46-108 (116)
56 PF14658 EF-hand_9: EF-hand do 99.0 3.3E-09 7.1E-14 57.1 6.8 61 19-79 2-64 (66)
57 cd00252 SPARC_EC SPARC_EC; ext 99.0 4.7E-09 1E-13 63.8 7.9 63 11-77 44-106 (116)
58 cd05030 calgranulins Calgranul 99.0 5.5E-09 1.2E-13 60.7 7.3 68 90-157 7-81 (88)
59 KOG2643 Ca2+ binding protein, 98.9 6.8E-08 1.5E-12 69.7 11.4 129 19-156 322-454 (489)
60 cd05030 calgranulins Calgranul 98.9 2.7E-08 5.9E-13 57.7 7.9 69 12-80 5-80 (88)
61 KOG0041 Predicted Ca2+-binding 98.8 4.4E-08 9.4E-13 63.7 8.3 68 90-157 98-165 (244)
62 KOG4251 Calcium binding protei 98.8 6.1E-08 1.3E-12 65.1 8.9 65 14-78 100-167 (362)
63 KOG0036 Predicted mitochondria 98.8 1.2E-07 2.7E-12 68.0 10.6 98 51-156 14-111 (463)
64 KOG0041 Predicted Ca2+-binding 98.8 1.2E-07 2.7E-12 61.7 9.3 110 8-119 92-203 (244)
65 PF12763 EF-hand_4: Cytoskelet 98.7 1.1E-07 2.4E-12 56.6 7.2 69 8-79 3-71 (104)
66 cd05024 S-100A10 S-100A10: A s 98.7 5.5E-07 1.2E-11 51.9 8.6 65 91-156 8-77 (91)
67 KOG1029 Endocytic adaptor prot 98.6 1.1E-06 2.4E-11 67.7 12.4 146 5-155 6-257 (1118)
68 KOG2643 Ca2+ binding protein, 98.6 1.3E-06 2.8E-11 63.3 11.9 131 16-155 234-384 (489)
69 KOG0031 Myosin regulatory ligh 98.6 3.7E-07 8E-12 57.1 7.8 64 15-78 101-164 (171)
70 KOG2562 Protein phosphatase 2 98.6 7.9E-07 1.7E-11 64.8 9.3 134 15-155 225-379 (493)
71 PF00036 EF-hand_1: EF hand; 98.6 1.6E-07 3.6E-12 42.5 3.7 23 95-117 4-26 (29)
72 cd05024 S-100A10 S-100A10: A s 98.5 3.3E-06 7.1E-11 48.8 9.2 68 12-80 5-77 (91)
73 KOG0169 Phosphoinositide-speci 98.5 4E-06 8.7E-11 64.6 12.3 144 6-157 127-276 (746)
74 PF00036 EF-hand_1: EF hand; 98.5 3.3E-07 7.1E-12 41.5 4.0 28 128-155 1-28 (29)
75 PF12763 EF-hand_4: Cytoskelet 98.5 1.8E-06 3.8E-11 51.5 8.2 65 88-155 7-71 (104)
76 KOG0751 Mitochondrial aspartat 98.4 1.4E-05 3E-10 59.1 12.7 103 12-120 33-137 (694)
77 KOG0751 Mitochondrial aspartat 98.4 2.1E-06 4.5E-11 63.3 8.3 121 19-150 112-239 (694)
78 KOG4666 Predicted phosphate ac 98.4 7.2E-07 1.6E-11 62.3 5.3 120 28-156 240-360 (412)
79 PF13405 EF-hand_6: EF-hand do 98.4 7.7E-07 1.7E-11 41.0 3.8 29 93-121 2-31 (31)
80 KOG0030 Myosin essential light 98.4 1.6E-05 3.5E-10 49.0 10.0 102 50-155 10-116 (152)
81 PF14788 EF-hand_10: EF hand; 98.3 4.5E-06 9.9E-11 42.5 6.0 49 31-79 1-49 (51)
82 PF13405 EF-hand_6: EF-hand do 98.3 1.3E-06 2.8E-11 40.3 3.7 30 16-45 1-31 (31)
83 KOG0377 Protein serine/threoni 98.3 3.7E-06 8E-11 61.2 7.5 68 52-119 548-615 (631)
84 PF14788 EF-hand_10: EF hand; 98.3 6.2E-06 1.3E-10 42.0 6.1 49 107-155 1-49 (51)
85 KOG1707 Predicted Ras related/ 98.3 1.7E-05 3.7E-10 59.8 10.7 148 6-157 186-379 (625)
86 PRK12309 transaldolase/EF-hand 98.3 8.1E-06 1.8E-10 59.8 8.6 59 85-156 328-386 (391)
87 PF13202 EF-hand_5: EF hand; P 98.2 2.3E-06 4.9E-11 37.3 3.2 23 94-116 2-24 (25)
88 KOG0038 Ca2+-binding kinase in 98.2 1.4E-05 3E-10 49.7 7.5 100 18-120 74-178 (189)
89 KOG0046 Ca2+-binding actin-bun 98.1 1.9E-05 4.1E-10 58.7 7.6 73 6-79 10-85 (627)
90 PRK12309 transaldolase/EF-hand 98.1 3E-05 6.5E-10 56.9 7.9 58 45-119 328-385 (391)
91 KOG0040 Ca2+-binding actin-bun 98.0 4.7E-05 1E-09 63.0 9.2 99 51-150 2253-2356(2399)
92 PF13202 EF-hand_5: EF hand; P 98.0 1.2E-05 2.5E-10 35.0 3.1 23 18-40 2-24 (25)
93 PF10591 SPARC_Ca_bdg: Secrete 97.8 9.5E-06 2E-10 49.2 1.8 61 89-151 52-112 (113)
94 PF10591 SPARC_Ca_bdg: Secrete 97.8 1E-05 2.2E-10 49.1 1.2 62 47-114 50-111 (113)
95 KOG1955 Ral-GTPase effector RA 97.6 0.00021 4.6E-09 53.1 6.0 73 5-79 221-293 (737)
96 PF09279 EF-hand_like: Phospho 97.5 0.00043 9.4E-09 39.6 5.5 64 93-157 2-71 (83)
97 KOG0046 Ca2+-binding actin-bun 97.5 0.00054 1.2E-08 51.3 7.0 64 91-155 19-85 (627)
98 KOG4251 Calcium binding protei 97.4 0.00023 4.9E-09 48.3 3.5 65 91-155 101-168 (362)
99 PF09279 EF-hand_like: Phospho 97.3 0.0011 2.4E-08 37.9 5.6 62 17-79 2-69 (83)
100 KOG4666 Predicted phosphate ac 97.2 0.0019 4.2E-08 45.7 6.7 103 14-121 258-361 (412)
101 KOG4065 Uncharacterized conser 97.1 0.0045 9.6E-08 37.2 6.4 58 95-152 71-142 (144)
102 smart00054 EFh EF-hand, calciu 97.1 0.0011 2.3E-08 28.9 3.1 26 17-42 2-27 (29)
103 smart00054 EFh EF-hand, calciu 97.1 0.0013 2.7E-08 28.7 3.3 25 130-154 3-27 (29)
104 KOG1955 Ral-GTPase effector RA 97.0 0.0022 4.7E-08 48.0 5.3 63 90-154 230-292 (737)
105 PF05042 Caleosin: Caleosin re 96.9 0.045 9.8E-07 35.5 10.1 144 13-158 5-169 (174)
106 KOG0998 Synaptic vesicle prote 96.7 0.0029 6.2E-08 51.2 4.4 145 5-154 119-344 (847)
107 KOG4065 Uncharacterized conser 96.5 0.034 7.3E-07 33.5 7.0 67 7-75 61-141 (144)
108 KOG0042 Glycerol-3-phosphate d 96.3 0.019 4.2E-07 43.9 6.7 77 5-81 583-659 (680)
109 KOG3555 Ca2+-binding proteogly 96.2 0.011 2.3E-07 42.4 4.7 62 89-154 248-309 (434)
110 PF05517 p25-alpha: p25-alpha 96.1 0.073 1.6E-06 34.2 7.7 62 19-80 6-70 (154)
111 PF05517 p25-alpha: p25-alpha 95.9 0.12 2.5E-06 33.3 8.0 57 101-157 12-71 (154)
112 KOG0035 Ca2+-binding actin-bun 95.8 0.14 3E-06 41.6 9.4 106 6-115 738-848 (890)
113 PLN02952 phosphoinositide phos 95.7 0.19 4.1E-06 39.4 9.8 89 65-156 14-111 (599)
114 KOG1265 Phospholipase C [Lipid 95.7 0.39 8.4E-06 39.2 11.4 121 25-155 158-299 (1189)
115 KOG4347 GTPase-activating prot 95.6 0.02 4.4E-07 44.3 4.1 52 90-141 554-605 (671)
116 KOG0169 Phosphoinositide-speci 95.4 0.23 5E-06 39.5 9.3 98 51-156 136-233 (746)
117 KOG3555 Ca2+-binding proteogly 95.4 0.05 1.1E-06 39.1 5.3 107 8-122 200-313 (434)
118 KOG1707 Predicted Ras related/ 95.3 0.039 8.5E-07 42.5 4.8 70 5-80 305-378 (625)
119 KOG1029 Endocytic adaptor prot 95.1 0.038 8.3E-07 43.8 4.4 68 9-78 189-256 (1118)
120 KOG2243 Ca2+ release channel ( 95.1 0.044 9.6E-07 46.4 4.8 61 96-157 4062-4122(5019)
121 KOG0998 Synaptic vesicle prote 94.9 0.04 8.7E-07 44.9 4.0 144 7-155 3-190 (847)
122 KOG0042 Glycerol-3-phosphate d 94.2 0.17 3.7E-06 39.0 5.7 66 92-157 594-659 (680)
123 KOG4578 Uncharacterized conser 94.1 0.023 5E-07 40.5 1.0 29 90-118 369-397 (421)
124 PF09069 EF-hand_3: EF-hand; 94.1 0.64 1.4E-05 27.0 7.4 64 91-157 3-77 (90)
125 PF08726 EFhand_Ca_insen: Ca2+ 93.5 0.074 1.6E-06 29.2 2.1 56 89-152 4-66 (69)
126 KOG4347 GTPase-activating prot 93.2 0.25 5.4E-06 38.7 5.2 103 6-113 495-612 (671)
127 PLN02952 phosphoinositide phos 92.8 2.4 5.1E-05 33.6 9.9 88 28-118 13-109 (599)
128 PF05042 Caleosin: Caleosin re 92.0 1.5 3.2E-05 28.7 6.8 29 15-43 96-124 (174)
129 KOG1264 Phospholipase C [Lipid 91.6 2.1 4.5E-05 35.1 8.4 148 8-156 136-294 (1267)
130 KOG3866 DNA-binding protein of 91.3 1.9 4E-05 31.0 7.3 67 94-160 247-329 (442)
131 KOG4578 Uncharacterized conser 90.3 0.3 6.5E-06 35.1 2.7 62 92-155 334-398 (421)
132 KOG2301 Voltage-gated Ca2+ cha 89.7 1.7 3.7E-05 38.2 7.0 75 8-83 1410-1488(1592)
133 KOG4403 Cell surface glycoprot 89.1 1.2 2.7E-05 33.3 5.1 57 63-119 40-96 (575)
134 PF08976 DUF1880: Domain of un 88.9 0.45 9.8E-06 28.8 2.4 32 48-79 4-35 (118)
135 PF11116 DUF2624: Protein of u 88.7 3.1 6.7E-05 23.8 6.9 48 31-78 14-61 (85)
136 KOG3866 DNA-binding protein of 88.4 0.57 1.2E-05 33.5 3.0 60 20-79 249-324 (442)
137 KOG0035 Ca2+-binding actin-bun 87.9 2.4 5.3E-05 34.9 6.4 66 91-156 747-817 (890)
138 PF07308 DUF1456: Protein of u 87.4 3.3 7.1E-05 22.7 5.4 50 108-157 14-63 (68)
139 KOG1265 Phospholipase C [Lipid 87.0 13 0.00027 31.1 9.7 84 33-119 206-299 (1189)
140 PF12174 RST: RCD1-SRO-TAF4 (R 86.3 1 2.2E-05 24.8 2.6 50 107-159 8-57 (70)
141 PLN02228 Phosphoinositide phos 86.2 6.9 0.00015 30.9 7.9 66 89-156 22-93 (567)
142 PLN02222 phosphoinositide phos 86.0 5.4 0.00012 31.6 7.3 65 90-156 24-91 (581)
143 PF11116 DUF2624: Protein of u 86.0 4.8 0.0001 23.1 6.6 42 107-148 14-55 (85)
144 KOG2243 Ca2+ release channel ( 85.9 2 4.4E-05 37.4 5.1 59 20-79 4062-4120(5019)
145 PF08976 DUF1880: Domain of un 84.7 1.2 2.5E-05 27.1 2.5 33 124-156 4-36 (118)
146 PLN02230 phosphoinositide phos 84.7 6.4 0.00014 31.3 7.1 67 89-156 27-103 (598)
147 PF14513 DAG_kinase_N: Diacylg 84.6 7.9 0.00017 24.5 6.4 33 105-137 46-79 (138)
148 cd07313 terB_like_2 tellurium 84.3 4.6 0.0001 23.8 5.1 84 28-116 12-97 (104)
149 PF14513 DAG_kinase_N: Diacylg 84.3 8.2 0.00018 24.4 6.8 69 31-104 7-82 (138)
150 PLN02222 phosphoinositide phos 83.2 7.6 0.00017 30.8 7.0 62 16-79 26-90 (581)
151 PF07308 DUF1456: Protein of u 82.6 6 0.00013 21.6 5.2 47 32-78 14-60 (68)
152 PLN02228 Phosphoinositide phos 82.2 11 0.00024 29.9 7.4 58 18-77 27-90 (567)
153 PF00046 Homeobox: Homeobox do 81.5 5.5 0.00012 20.4 7.3 49 4-59 2-50 (57)
154 KOG2871 Uncharacterized conser 81.5 1.7 3.7E-05 32.0 2.8 63 90-152 308-371 (449)
155 PLN02230 phosphoinositide phos 77.9 18 0.00039 28.9 7.5 64 15-79 29-102 (598)
156 PF09068 EF-hand_2: EF hand; 77.7 14 0.00031 22.9 7.4 29 92-120 98-126 (127)
157 cd00086 homeodomain Homeodomai 77.7 7.7 0.00017 19.8 7.0 50 4-60 2-51 (59)
158 KOG2871 Uncharacterized conser 77.5 2.2 4.7E-05 31.5 2.3 65 14-78 308-373 (449)
159 PF01325 Fe_dep_repress: Iron 76.8 6.4 0.00014 20.8 3.5 55 8-71 1-55 (60)
160 PF00404 Dockerin_1: Dockerin 76.7 3.5 7.5E-05 16.9 1.9 14 101-114 1-14 (21)
161 KOG4070 Putative signal transd 74.8 8.4 0.00018 24.7 4.1 24 97-120 63-86 (180)
162 TIGR01639 P_fal_TIGR01639 Plas 74.3 11 0.00023 20.1 4.0 31 30-60 8-38 (61)
163 PRK09430 djlA Dna-J like membr 74.2 29 0.00062 24.7 8.8 99 27-136 67-175 (267)
164 PF09069 EF-hand_3: EF-hand; 74.1 15 0.00032 21.4 7.7 62 15-79 3-75 (90)
165 PLN02223 phosphoinositide phos 73.3 27 0.00059 27.5 7.2 68 89-157 14-94 (537)
166 PF01023 S_100: S-100/ICaBP ty 72.8 9.8 0.00021 18.7 3.6 29 91-119 6-36 (44)
167 PLN02223 phosphoinositide phos 71.6 26 0.00056 27.6 6.8 63 16-79 17-92 (537)
168 PF12174 RST: RCD1-SRO-TAF4 (R 71.1 15 0.00033 20.2 5.1 49 65-120 6-54 (70)
169 cd07313 terB_like_2 tellurium 70.2 9.8 0.00021 22.3 3.6 53 65-119 13-65 (104)
170 TIGR01565 homeo_ZF_HD homeobox 68.5 16 0.00034 19.3 5.5 43 4-47 3-45 (58)
171 PF02761 Cbl_N2: CBL proto-onc 68.4 20 0.00044 20.6 6.5 48 106-153 21-68 (85)
172 KOG4004 Matricellular protein 66.2 3 6.6E-05 28.0 0.9 46 64-115 201-246 (259)
173 PF03672 UPF0154: Uncharacteri 66.1 19 0.00042 19.4 4.3 32 29-60 29-60 (64)
174 KOG3449 60S acidic ribosomal p 65.1 28 0.00061 21.0 6.4 43 95-137 5-47 (112)
175 COG4103 Uncharacterized protei 64.9 32 0.0007 21.9 5.1 58 95-155 34-94 (148)
176 PF05099 TerB: Tellurite resis 63.2 6.2 0.00013 24.6 1.9 81 28-113 36-118 (140)
177 KOG3077 Uncharacterized conser 63.0 48 0.001 23.5 6.2 67 90-156 63-130 (260)
178 PF04157 EAP30: EAP30/Vps36 fa 62.9 47 0.001 22.8 10.9 39 102-140 108-149 (223)
179 KOG0039 Ferric reductase, NADH 62.8 29 0.00064 28.1 5.9 64 90-154 17-88 (646)
180 PTZ00373 60S Acidic ribosomal 62.4 33 0.00071 20.9 5.5 42 96-137 8-49 (112)
181 KOG1954 Endocytosis/signaling 62.2 15 0.00032 27.7 3.8 56 93-151 446-501 (532)
182 PF03979 Sigma70_r1_1: Sigma-7 61.3 12 0.00025 21.2 2.6 32 104-137 18-49 (82)
183 KOG3449 60S acidic ribosomal p 61.2 34 0.00074 20.7 6.3 56 18-78 4-59 (112)
184 PRK00523 hypothetical protein; 61.1 27 0.00058 19.4 4.3 32 29-60 37-68 (72)
185 PF09336 Vps4_C: Vps4 C termin 60.0 17 0.00037 19.4 3.0 26 107-132 29-54 (62)
186 KOG4070 Putative signal transd 59.9 44 0.00095 21.6 5.1 84 17-100 17-107 (180)
187 COG3763 Uncharacterized protei 59.7 28 0.0006 19.2 4.2 32 29-60 36-67 (71)
188 PRK06253 O-phosphoseryl-tRNA s 56.9 78 0.0017 25.0 6.9 73 7-79 81-154 (529)
189 PF12419 DUF3670: SNF2 Helicas 56.9 43 0.00093 21.2 4.9 49 104-152 80-138 (141)
190 cd05833 Ribosomal_P2 Ribosomal 56.7 42 0.00092 20.3 5.5 51 97-152 7-57 (109)
191 KOG0492 Transcription factor M 54.4 30 0.00066 23.5 3.9 49 3-58 145-193 (246)
192 TIGR01848 PHA_reg_PhaR polyhyd 53.9 47 0.001 20.0 4.9 71 58-142 10-84 (107)
193 TIGR00470 sepS O-phosphoseryl- 53.7 92 0.002 24.5 6.7 71 8-79 82-153 (533)
194 PRK01844 hypothetical protein; 53.4 38 0.00082 18.8 3.9 32 29-60 36-67 (72)
195 KOG0488 Transcription factor B 52.1 53 0.0011 24.0 5.2 50 3-59 173-222 (309)
196 PF08349 DUF1722: Protein of u 50.8 55 0.0012 19.9 5.0 15 104-118 82-96 (117)
197 PF04876 Tenui_NCP: Tenuivirus 50.6 66 0.0014 20.7 7.3 54 54-119 86-139 (175)
198 PF08414 NADPH_Ox: Respiratory 50.5 52 0.0011 19.5 7.8 63 49-120 28-93 (100)
199 PF13623 SurA_N_2: SurA N-term 50.4 65 0.0014 20.6 8.2 80 66-152 47-144 (145)
200 PF13551 HTH_29: Winged helix- 50.3 50 0.0011 19.3 7.4 51 9-59 58-110 (112)
201 PHA02105 hypothetical protein 50.2 38 0.00081 17.8 3.6 48 31-78 4-56 (68)
202 PRK13503 transcriptional activ 50.0 87 0.0019 21.9 7.2 25 53-77 173-197 (278)
203 TIGR03573 WbuX N-acetyl sugar 49.9 56 0.0012 24.1 5.2 42 105-152 300-341 (343)
204 PRK10945 gene expression modul 48.5 47 0.001 18.4 3.6 42 69-121 7-48 (72)
205 PF01885 PTS_2-RNA: RNA 2'-pho 48.5 46 0.001 22.2 4.2 35 102-136 27-61 (186)
206 PF13331 DUF4093: Domain of un 48.0 54 0.0012 18.9 8.3 76 48-133 7-86 (87)
207 TIGR02787 codY_Gpos GTP-sensin 48.0 80 0.0017 22.2 5.3 47 8-60 176-222 (251)
208 PF08461 HTH_12: Ribonuclease 47.7 38 0.00082 18.3 3.1 37 104-140 10-46 (66)
209 PF01885 PTS_2-RNA: RNA 2'-pho 47.7 49 0.0011 22.1 4.2 38 25-62 26-63 (186)
210 PLN00138 large subunit ribosom 46.7 66 0.0014 19.6 5.4 39 99-137 9-47 (113)
211 KOG4286 Dystrophin-like protei 45.6 1.3E+02 0.0029 25.1 6.7 137 14-157 419-582 (966)
212 KOG4301 Beta-dystrobrevin [Cyt 45.2 51 0.0011 24.4 4.2 61 94-155 113-173 (434)
213 KOG1954 Endocytosis/signaling 45.0 53 0.0011 24.9 4.3 56 17-75 446-501 (532)
214 COG5502 Uncharacterized conser 44.5 80 0.0017 19.9 7.1 73 52-133 58-132 (135)
215 PF12987 DUF3871: Domain of un 44.3 1.2E+02 0.0027 22.0 6.1 63 93-155 194-285 (323)
216 PRK00819 RNA 2'-phosphotransfe 44.0 73 0.0016 21.2 4.6 43 26-71 28-70 (179)
217 PF11422 IBP39: Initiator bind 44.0 95 0.0021 20.6 8.7 69 53-123 21-91 (181)
218 PF07128 DUF1380: Protein of u 43.7 62 0.0013 20.6 3.9 33 107-139 26-58 (139)
219 COG5069 SAC6 Ca2+-binding acti 43.7 67 0.0015 25.1 4.7 85 11-102 481-565 (612)
220 PRK04387 hypothetical protein; 43.6 66 0.0014 18.7 3.9 64 7-71 9-73 (90)
221 PF15144 DUF4576: Domain of un 43.0 12 0.00025 21.0 0.6 44 103-147 36-79 (88)
222 PRK09430 djlA Dna-J like membr 42.4 84 0.0018 22.4 5.0 11 104-114 68-78 (267)
223 PF10437 Lip_prot_lig_C: Bacte 40.5 69 0.0015 18.1 4.4 42 110-153 44-86 (86)
224 PRK00819 RNA 2'-phosphotransfe 40.4 83 0.0018 21.0 4.4 16 62-77 28-43 (179)
225 cd04411 Ribosomal_P1_P2_L12p R 40.3 83 0.0018 18.9 6.3 42 108-154 17-58 (105)
226 PRK10391 oriC-binding nucleoid 40.1 57 0.0012 17.9 2.9 12 89-100 15-26 (71)
227 smart00513 SAP Putative DNA-bi 39.9 41 0.0009 15.3 2.5 18 107-124 3-20 (35)
228 PF07862 Nif11: Nitrogen fixat 39.6 51 0.0011 16.3 2.8 21 109-129 28-48 (49)
229 KOG2557 Uncharacterized conser 39.2 1.5E+02 0.0033 22.4 5.8 51 65-119 72-122 (427)
230 KOG0843 Transcription factor E 39.0 1.1E+02 0.0024 20.5 4.6 50 4-60 104-153 (197)
231 cd08315 Death_TRAILR_DR4_DR5 D 39.0 82 0.0018 18.5 7.2 25 109-133 66-90 (96)
232 PF09107 SelB-wing_3: Elongati 38.7 57 0.0012 16.6 2.9 30 105-139 8-37 (50)
233 COG1460 Uncharacterized protei 38.5 63 0.0014 19.8 3.3 29 109-137 81-109 (114)
234 KOG2623 Tyrosyl-tRNA synthetas 38.3 1.8E+02 0.0039 22.3 6.8 19 102-120 370-388 (467)
235 TIGR00135 gatC glutamyl-tRNA(G 38.3 80 0.0017 18.2 4.0 29 108-136 1-29 (93)
236 PF07499 RuvA_C: RuvA, C-termi 38.0 55 0.0012 16.2 4.1 39 110-152 3-41 (47)
237 PF00690 Cation_ATPase_N: Cati 37.9 54 0.0012 17.5 2.8 29 95-123 8-36 (69)
238 TIGR02675 tape_meas_nterm tape 37.8 51 0.0011 18.3 2.7 13 65-77 28-40 (75)
239 PRK14981 DNA-directed RNA poly 37.4 89 0.0019 18.9 3.9 14 47-60 78-91 (112)
240 PF02037 SAP: SAP domain; Int 36.7 49 0.0011 15.2 2.3 17 108-124 4-20 (35)
241 PF13720 Acetyltransf_11: Udp 36.6 83 0.0018 17.8 4.3 51 6-61 25-75 (83)
242 COG1321 TroR Mn-dependent tran 36.4 1.2E+02 0.0026 19.6 4.7 115 8-137 3-121 (154)
243 PF07553 Lipoprotein_Ltp: Host 36.0 63 0.0014 16.3 3.5 31 105-135 16-47 (48)
244 PHA02335 hypothetical protein 35.9 1E+02 0.0022 18.6 4.4 47 65-121 22-70 (118)
245 COG2818 Tag 3-methyladenine DN 35.2 64 0.0014 21.6 3.2 35 89-123 53-87 (188)
246 PF11020 DUF2610: Domain of un 35.2 88 0.0019 17.7 4.0 38 121-158 43-80 (82)
247 KOG0506 Glutaminase (contains 35.1 1.6E+02 0.0034 23.2 5.5 59 20-78 91-157 (622)
248 PRK12461 UDP-N-acetylglucosami 34.7 1.6E+02 0.0036 20.7 5.8 57 5-66 196-252 (255)
249 PF07879 PHB_acc_N: PHB/PHA ac 34.6 80 0.0017 17.1 3.4 20 99-118 11-30 (64)
250 PF05256 UPF0223: Uncharacteri 34.5 63 0.0014 18.7 2.8 63 8-71 10-73 (88)
251 PF04695 Pex14_N: Peroxisomal 34.4 1.2E+02 0.0026 19.0 6.0 48 91-140 4-51 (136)
252 TIGR01209 RNA ligase, Pab1020 34.4 1.8E+02 0.0039 22.1 5.7 29 20-48 162-190 (374)
253 KOG4286 Dystrophin-like protei 34.4 73 0.0016 26.4 3.9 100 52-152 421-530 (966)
254 PRK15121 right oriC-binding tr 34.4 1.7E+02 0.0037 20.8 8.0 55 14-78 4-58 (289)
255 KOG0039 Ferric reductase, NADH 33.4 1.4E+02 0.003 24.4 5.4 82 32-119 4-89 (646)
256 PF02337 Gag_p10: Retroviral G 33.2 81 0.0018 18.4 3.1 45 71-115 8-57 (90)
257 KOG0842 Transcription factor t 33.0 44 0.00096 24.3 2.4 50 4-60 155-204 (307)
258 PF02761 Cbl_N2: CBL proto-onc 32.9 1E+02 0.0022 17.8 6.1 49 30-78 21-69 (85)
259 PF11363 DUF3164: Protein of u 32.9 94 0.002 21.0 3.8 18 135-152 127-144 (195)
260 PF02209 VHP: Villin headpiece 32.8 43 0.00093 15.8 1.6 10 108-117 2-11 (36)
261 PF09494 Slx4: Slx4 endonuclea 32.4 85 0.0018 16.7 3.6 27 108-134 25-55 (64)
262 KOG0850 Transcription factor D 32.4 1.2E+02 0.0026 21.2 4.2 49 3-58 123-171 (245)
263 PF05321 HHA: Haemolysin expre 32.3 38 0.00082 17.8 1.5 27 111-137 10-36 (57)
264 cd07894 Adenylation_RNA_ligase 32.1 2E+02 0.0044 21.4 5.7 40 24-63 134-183 (342)
265 PRK00034 gatC aspartyl/glutamy 32.1 1.1E+02 0.0023 17.7 4.1 29 108-136 3-31 (95)
266 PRK10236 hypothetical protein; 31.8 1.8E+02 0.004 20.4 8.2 25 48-72 17-41 (237)
267 COG1059 Thermostable 8-oxoguan 31.6 1.7E+02 0.0036 19.9 5.5 23 103-125 66-88 (210)
268 KOG3077 Uncharacterized conser 31.3 2E+02 0.0043 20.6 11.3 66 14-79 63-129 (260)
269 KOG0484 Transcription factor P 30.7 1.3E+02 0.0027 18.2 4.4 47 6-59 21-67 (125)
270 PF08044 DUF1707: Domain of un 30.6 85 0.0018 16.1 3.2 47 10-58 4-50 (53)
271 PRK10219 DNA-binding transcrip 30.5 1.2E+02 0.0026 17.7 7.6 50 19-78 9-58 (107)
272 smart00389 HOX Homeodomain. DN 30.4 79 0.0017 15.7 6.7 49 5-60 3-51 (56)
273 PTZ00373 60S Acidic ribosomal 30.4 1.3E+02 0.0029 18.3 5.5 52 20-76 8-59 (112)
274 PHA02773 hypothetical protein; 30.2 72 0.0016 18.5 2.5 30 2-31 14-43 (112)
275 COG4103 Uncharacterized protei 29.8 1.6E+02 0.0034 18.9 6.7 92 19-118 34-128 (148)
276 cd00171 Sec7 Sec7 domain; Doma 29.6 1.7E+02 0.0038 19.4 9.5 37 101-137 143-181 (185)
277 COG4476 Uncharacterized protei 29.5 1.2E+02 0.0026 17.5 3.4 62 8-70 10-72 (90)
278 PRK09393 ftrA transcriptional 29.5 2.2E+02 0.0048 20.6 7.9 53 16-78 219-271 (322)
279 KOG2301 Voltage-gated Ca2+ cha 29.3 61 0.0013 29.4 3.0 70 87-157 1413-1486(1592)
280 PRK01381 Trp operon repressor; 29.3 83 0.0018 18.7 2.7 33 9-41 33-65 (99)
281 TIGR03573 WbuX N-acetyl sugar 29.2 1.8E+02 0.0039 21.5 5.1 65 37-117 276-342 (343)
282 KOG0493 Transcription factor E 29.1 1.8E+02 0.0039 20.8 4.7 48 4-58 248-295 (342)
283 KOG4629 Predicted mechanosensi 29.1 2.4E+02 0.0053 23.5 6.0 57 92-155 405-461 (714)
284 PRK09279 pyruvate phosphate di 28.9 3.8E+02 0.0082 23.1 7.6 73 44-119 112-187 (879)
285 TIGR03798 ocin_TIGR03798 bacte 28.6 1E+02 0.0022 16.4 5.3 25 108-132 25-49 (64)
286 TIGR02574 stabl_TIGR02574 puta 28.4 1E+02 0.0022 16.4 5.0 23 53-75 36-58 (63)
287 PF14771 DUF4476: Domain of un 28.3 1.3E+02 0.0027 17.4 8.5 47 31-78 4-50 (95)
288 PRK06402 rpl12p 50S ribosomal 28.2 1.4E+02 0.0031 18.0 5.9 31 107-137 16-46 (106)
289 PRK11511 DNA-binding transcrip 27.9 1.5E+02 0.0033 18.2 7.6 54 15-78 9-62 (127)
290 PF14848 HU-DNA_bdg: DNA-bindi 27.4 1.6E+02 0.0034 18.2 4.2 33 104-136 25-57 (124)
291 COG0721 GatC Asp-tRNAAsn/Glu-t 27.4 1.4E+02 0.003 17.6 3.9 30 107-136 2-31 (96)
292 PF11569 Homez: Homeodomain le 27.3 98 0.0021 16.3 2.5 29 106-136 21-49 (56)
293 TIGR02933 nifM_nitrog nitrogen 27.2 2.3E+02 0.0049 20.0 10.1 67 4-79 14-84 (256)
294 cd05831 Ribosomal_P1 Ribosomal 27.2 1.5E+02 0.0032 17.8 4.4 43 104-151 14-56 (103)
295 PF09373 PMBR: Pseudomurein-bi 26.9 75 0.0016 14.4 2.0 14 105-118 2-15 (33)
296 PF04963 Sigma54_CBD: Sigma-54 26.2 2.1E+02 0.0045 19.2 5.2 49 26-77 45-96 (194)
297 KOG4403 Cell surface glycoprot 25.9 3.2E+02 0.0069 21.3 7.9 87 27-120 40-130 (575)
298 COG5562 Phage envelope protein 25.2 59 0.0013 20.5 1.7 49 104-156 53-101 (137)
299 TIGR01321 TrpR trp operon repr 24.9 1.1E+02 0.0023 18.1 2.6 32 9-40 33-64 (94)
300 smart00153 VHP Villin headpiec 24.8 84 0.0018 14.7 1.8 10 108-117 2-11 (36)
301 smart00222 Sec7 Sec7 domain. D 24.7 2.2E+02 0.0048 18.9 9.5 37 101-137 145-183 (187)
302 PF08100 Dimerisation: Dimeris 24.7 42 0.00091 17.1 0.9 38 20-59 11-49 (51)
303 PF12631 GTPase_Cys_C: Catalyt 24.5 1.3E+02 0.0029 16.4 3.5 45 92-136 24-72 (73)
304 cd07316 terB_like_DjlA N-termi 24.2 1.6E+02 0.0034 17.1 5.4 52 65-119 13-64 (106)
305 PF10897 DUF2713: Protein of u 24.2 2.4E+02 0.0052 19.3 5.9 17 128-144 210-226 (246)
306 TIGR02736 cbb3_Q_epsi cytochro 24.2 72 0.0016 16.7 1.6 25 54-78 17-41 (56)
307 PLN02508 magnesium-protoporphy 24.1 3.1E+02 0.0067 20.5 5.6 97 13-124 42-141 (357)
308 PF11848 DUF3368: Domain of un 23.8 1.1E+02 0.0024 15.2 3.8 32 105-136 15-47 (48)
309 PF13829 DUF4191: Domain of un 23.8 2.4E+02 0.0051 19.7 4.5 36 26-61 162-197 (224)
310 PF09724 DUF2036: Uncharacteri 23.7 3E+02 0.0065 20.1 7.2 14 47-60 136-149 (325)
311 cd08313 Death_TNFR1 Death doma 23.5 1.5E+02 0.0033 16.7 3.2 23 108-132 9-31 (80)
312 cd01671 CARD Caspase activatio 23.3 1.4E+02 0.0031 16.2 3.9 46 105-155 25-70 (80)
313 cd00076 H4 Histone H4, one of 23.1 1.6E+02 0.0035 16.9 8.0 68 48-123 14-81 (85)
314 cd03035 ArsC_Yffb Arsenate Red 23.1 76 0.0017 18.8 1.9 14 143-156 71-84 (105)
315 cd05833 Ribosomal_P2 Ribosomal 23.0 1.9E+02 0.0041 17.5 5.4 55 20-79 6-60 (109)
316 PF06384 ICAT: Beta-catenin-in 22.9 1.4E+02 0.003 16.9 2.7 21 36-56 21-41 (78)
317 PF00627 UBA: UBA/TS-N domain; 22.7 86 0.0019 14.4 1.7 20 117-138 9-28 (37)
318 cd07176 terB tellurite resista 22.4 58 0.0013 19.0 1.3 36 65-100 16-52 (111)
319 KOG0487 Transcription factor A 22.4 1.1E+02 0.0023 22.4 2.8 49 3-58 236-284 (308)
320 PF07492 Trehalase_Ca-bi: Neut 22.2 37 0.0008 15.2 0.3 16 56-71 4-19 (30)
321 PF06627 DUF1153: Protein of u 22.2 1.8E+02 0.0038 17.0 3.4 33 105-142 47-79 (90)
322 PF06569 DUF1128: Protein of u 22.1 1.6E+02 0.0034 16.4 3.4 14 47-60 53-66 (71)
323 KOG3341 RNA polymerase II tran 21.9 2.9E+02 0.0062 19.3 8.9 51 55-105 104-154 (249)
324 PF05383 La: La domain; Inter 21.8 1E+02 0.0022 16.3 2.0 13 25-37 25-37 (61)
325 PRK10572 DNA-binding transcrip 21.6 3E+02 0.0065 19.4 8.4 10 66-75 198-207 (290)
326 PF04558 tRNA_synt_1c_R1: Glut 21.5 87 0.0019 20.5 2.0 47 89-136 83-129 (164)
327 PF06226 DUF1007: Protein of u 21.0 1.2E+02 0.0026 20.7 2.7 25 96-120 55-79 (212)
328 COG4807 Uncharacterized protei 20.8 2.3E+02 0.0051 17.9 6.4 44 111-155 102-145 (155)
329 PF09851 SHOCT: Short C-termin 20.2 1.1E+02 0.0023 13.6 2.0 13 105-117 14-26 (31)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=158.72 Aligned_cols=148 Identities=39% Similarity=0.733 Sum_probs=138.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcC
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSS 84 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 84 (163)
...+|+++++++++++|..+|++++|.|++.+|..+++.+|.+++..++..++..++. +.+.|+|.+|+.++.....
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~-- 86 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK-- 86 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc--
Confidence 3578999999999999999999999999999999999999999999999999999998 8899999999999987653
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 85 KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 85 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
.....+.+..+|+.||.+++|+|+..+++.+++.+|..+++++++.+++.++++++|.|++++|++.+...
T Consensus 87 -~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 87 -RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred -cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 33368899999999999999999999999999999999999999999999999999999999999987654
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-27 Score=150.53 Aligned_cols=147 Identities=42% Similarity=0.789 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCC-
Q 037787 9 LDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSP- 87 (163)
Q Consensus 9 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~- 87 (163)
++..++..++++|..+|.+++|.|+..++..+++.+|..++..++..++..+|.+++|.|++++|+.++..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 6778899999999999999999999999999999999999999999999999999999999999999998765433322
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 88 YSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 88 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
...+.++.+|+.+|.+++|.|+.++|+.++..+|.+.+.+++..+++.+|.+++|.|+|.+|+..|..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 14568999999999999999999999999999999999999999999999999999999999999865
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=9.3e-25 Score=141.00 Aligned_cols=151 Identities=34% Similarity=0.601 Sum_probs=137.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhc
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS 83 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 83 (163)
..+..+++.+++++..+|..+|.+++|.|+..+|..++..++..++..++..++..++.+++|.|++.+|..++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~- 84 (158)
T PTZ00183 6 SERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG- 84 (158)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc-
Confidence 3477899999999999999999999999999999999999998889999999999999999999999999998865432
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 84 SKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 84 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
.......+..+|+.+|.+++|.|+.++|..++...|..++..++..++..+|.+++|.|++++|...+...+
T Consensus 85 --~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 85 --ERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred --CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 122457789999999999999999999999999999999999999999999999999999999999987743
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.3e-24 Score=131.54 Aligned_cols=150 Identities=31% Similarity=0.581 Sum_probs=141.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhc
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS 83 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 83 (163)
.+...+++.+...++..|..+|.+++|.|+.++|..+++++|+.+..+++..+...+++++.|.|++++|+..+......
T Consensus 22 ~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e 101 (172)
T KOG0028|consen 22 SPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE 101 (172)
T ss_pred CCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 84 SKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 84 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
.. +.+.+..+|+.+|.+++|.|+..+|+.+.+.+|..++++++.+++..+|.+++|.|+.++|..+|+..
T Consensus 102 ~d---t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 102 RD---TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cC---cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 43 68889999999999999999999999999999999999999999999999999999999999998753
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=8e-24 Score=135.27 Aligned_cols=146 Identities=47% Similarity=0.867 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCC
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKS 86 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 86 (163)
..+++++++.+...|..+|.+++|.|+..+|..++..++..++.+.+..++..++.+++|.|++++|+.++..... .
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~---~ 79 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK---D 79 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc---C
Confidence 4688999999999999999999999999999999999998889999999999999999999999999999875432 1
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 87 PYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 87 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
......+..+|..+|.+++|.|+.++|..++...|..++.+++..+++.+|.+++|.|++.+|+.++..
T Consensus 80 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 80 TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 224567899999999999999999999999999998899999999999999999999999999998753
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=1.3e-22 Score=124.61 Aligned_cols=142 Identities=31% Similarity=0.552 Sum_probs=131.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCC
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKS 86 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 86 (163)
.+|++.++.+++++|..+|+|++|.|..++++..+.++|..++++++..++... .|-|+|.-|+.++...+...
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gt-- 97 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGT-- 97 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCC--
Confidence 358999999999999999999999999999999999999999999999999777 78899999999998766333
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 87 PYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 87 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
..++.+..+|..||.++.|.|..+.|+.+|...|.++++++++.+++.+-.+..|.++|..|+..+..
T Consensus 98 -dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 98 -DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred -CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 25788999999999999999999999999999999999999999999999999999999999999884
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=3.1e-22 Score=120.96 Aligned_cols=146 Identities=29% Similarity=0.567 Sum_probs=131.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC--CCcceehHHHHHHHhHHHhcC
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTN--SNGLVEFSEFVALVAPELLSS 84 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~l~~~~~~~ 84 (163)
..++++.+.+++.+|..+|..++|.|+..+....|+.+|.+|+..++...+..+..+ .-..++|++|+.++......
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn- 81 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN- 81 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc-
Confidence 356778889999999999999999999999999999999999999999999988776 45789999999999876543
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037787 85 KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAIT 154 (163)
Q Consensus 85 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (163)
..+.+.+...+-++.||++++|.|...+|+.+|.++|..+++++++.+++-. .|.+|.|+|+.|+..+.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 4556788889999999999999999999999999999999999999999877 68889999999998764
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-19 Score=117.54 Aligned_cols=143 Identities=38% Similarity=0.628 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcc-eehHHHHHHHhHHHhcC
Q 037787 7 MNLDDDQIAELREIFRSFDRN-NDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGL-VEFSEFVALVAPELLSS 84 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~-i~~~ef~~~l~~~~~~~ 84 (163)
+.++..|+..+...|..++++ +.|.++.+||..+. .+..++- ..++++.++.+++|. |++++|+..+....+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~---~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPL---ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcH---HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 459999999999999999999 99999999999987 4444444 567788888888888 99999999998765433
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCC------HHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 85 KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL-GHELT------AEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 85 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~------~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
...+.++.+|+.+|.+++|.|+.+|+.+++..+ +...+ .+.++.++..+|.++||.|+++||++.+.+.
T Consensus 101 ---~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 101 ---SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred ---cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 245689999999999999999999999999985 33333 3457778899999999999999999998875
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=1.8e-18 Score=112.65 Aligned_cols=132 Identities=31% Similarity=0.481 Sum_probs=121.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHH
Q 037787 14 IAELREIFRSFDRNNDGSLTQLELGSLLRSLGL-KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQ 92 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 92 (163)
..++...|...|++++|.|+..|+..+|...+. +.+.+.++.|...+|.+.+|.|++.||..++. ....
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~----------~i~~ 125 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK----------YINQ 125 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH----------HHHH
Confidence 457889999999999999999999999986655 45788899999999999999999999999998 3567
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
++.+|+.+|.|+.|.|+..||+++|..+|..++++..+.+++.+|....|.|.+++|++.+-.
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999887899999999998755
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.78 E-value=1.8e-17 Score=116.90 Aligned_cols=142 Identities=25% Similarity=0.430 Sum_probs=129.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCC
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLK-PSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSK 85 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 85 (163)
.+..++.-.++..+|..+|.+++|.++..++...+..+..+ +..+....+++..|.+.+|.++|.+|...+..
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------ 79 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------ 79 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------
Confidence 34555666789999999999999999999999999988776 77778899999999999999999999999975
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 86 SPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 86 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
.+..+.++|+.+|.++||.|+.+|+.+.|+.+|.+++.++++.+++.+|.++++.|++++|.+++.-.+
T Consensus 80 ---~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 80 ---KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred ---hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 356789999999999999999999999999999999999999999999999999999999999987644
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.76 E-value=6.2e-17 Score=105.66 Aligned_cols=144 Identities=24% Similarity=0.447 Sum_probs=116.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcC
Q 037787 6 PMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGL-KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSS 84 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 84 (163)
.+.+++.++.++.+-|.. .-++|.++.++|..++..... .-+..-.+.+|+.+|.+++|.|++.||+..+.......
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt 97 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT 97 (193)
T ss_pred hcCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc
Confidence 455667777666666665 235899999999999998765 34555688999999999999999999999987654222
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037787 85 KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL----GH-------ELTAEELTGMIREADTDGDGRISFQEFAQAI 153 (163)
Q Consensus 85 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (163)
..+.+..+|+.+|.+++|.|+++|+..++... +. ...++-++.+|+.+|.|.||.|++++|+..+
T Consensus 98 ----~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 98 ----LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred ----HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 46678889999999999999999999998863 32 1245678999999999999999999999987
Q ss_pred HH
Q 037787 154 TS 155 (163)
Q Consensus 154 ~~ 155 (163)
..
T Consensus 174 ~~ 175 (193)
T KOG0044|consen 174 KA 175 (193)
T ss_pred hh
Confidence 65
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3e-14 Score=98.11 Aligned_cols=141 Identities=23% Similarity=0.357 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCC-Cc
Q 037787 12 DQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGL-KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSP-YS 89 (163)
Q Consensus 12 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~-~~ 89 (163)
..+.+-++.|...|.|++|.++.+||..+|+---. .+..-.|...+.-.|+|++|.|+++||+.-+.........+ .-
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 34567788999999999999999999999965332 23444577888999999999999999998886543211111 11
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (163)
...-.+++...|.|+||+|+.+|++..+..-+...+..++..++...|.|++|++|++|.+.-
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 223457888999999999999999999988887788999999999999999999999998753
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.57 E-value=1.6e-13 Score=104.20 Aligned_cols=105 Identities=23% Similarity=0.373 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHHhCCCCCcceehHHHHHHHhHHHh
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLG-LKPSPDQ---LETLIQKADTNSNGLVEFSEFVALVAPELL 82 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 82 (163)
..++..++++++++|..+|++++|.+ +..+++.+| ..++.++ ++.++..+|.+++|.|+++||+.++....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg- 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG- 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-
Confidence 47888999999999999999999986 888889999 5888877 89999999999999999999999998532
Q ss_pred cCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 83 SSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 83 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
.....+.+..+|+.+|++++|.|+.+||+.++..
T Consensus 210 ---~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 ---NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred ---cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 2336778999999999999999999999999988
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6e-14 Score=96.63 Aligned_cols=144 Identities=20% Similarity=0.325 Sum_probs=115.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhc------CCCC
Q 037787 14 IAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS------SKSP 87 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~------~~~~ 87 (163)
-.++..++..+|.+++|+|+..++..++..........++.+-+..++.+.+|.|+|+++.......... ....
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~ 155 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDN 155 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhc
Confidence 4578999999999999999999999998765555556677788899999999999999999887642110 0000
Q ss_pred CcH----HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 88 YSE----EQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE-LTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 88 ~~~----~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
... ..-++.|+.-|.|++|.++.+||..++..-..+ |.+-.+.+.+...|.|++|.|+++||+.-|-...
T Consensus 156 ~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 156 EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 111 123567999999999999999999999886544 7788899999999999999999999999877654
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.49 E-value=3.3e-13 Score=74.35 Aligned_cols=62 Identities=44% Similarity=0.876 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHhhCCCCCCceeHHHHHHHH
Q 037787 92 QLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAE----ELTGMIREADTDGDGRISFQEFAQAI 153 (163)
Q Consensus 92 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (163)
.++++|+.+|.+++|.|+.+||+.++..++...++. .+..+++.+|.+++|.|+++||+++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367899999999999999999999999998766554 45556999999999999999999875
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=4.8e-13 Score=77.42 Aligned_cols=68 Identities=29% Similarity=0.402 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFDR-DGNGFITAAELAHSMAK-LGHELTA-EELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
...+..+|+.||. +++|.|+..||+.++.. +|..++. ++++.+++.+|.|++|.|+|+||+.++...+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3468899999999 99999999999999999 8877887 9999999999999999999999999988753
No 17
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.43 E-value=4.5e-12 Score=81.18 Aligned_cols=103 Identities=35% Similarity=0.454 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-----
Q 037787 50 PDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHEL----- 124 (163)
Q Consensus 50 ~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~----- 124 (163)
..++..+|..+|.+++|.|+..++-.+++... ..++...+..++..+|.+++|.|+..+|..++...+...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLG----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 34688999999999999999999999998654 334788999999999999999999999999999865442
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 125 TAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 125 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
+.+++.++|+.+|.+++|.|+..++...|...
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 34599999999999999999999999999874
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.41 E-value=4.4e-12 Score=83.08 Aligned_cols=86 Identities=31% Similarity=0.567 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHH
Q 037787 14 IAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQL 93 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 93 (163)
++.++.+|..+|+|++|.|+..||..+|..+|..++++-++.++++++...+|.|.+++|+.++.. ...+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~----------L~~l 192 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV----------LQRL 192 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH----------HHHH
Confidence 456666777777777777777777777777777777777777777776555677777777777653 3356
Q ss_pred HHHHHhhcCCCCCccc
Q 037787 94 RQLFRMFDRDGNGFIT 109 (163)
Q Consensus 94 ~~~f~~~D~~~~g~i~ 109 (163)
.++|+..|.+.+|.|+
T Consensus 193 t~~Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 193 TEAFRRRDTAQQGSIT 208 (221)
T ss_pred HHHHHHhccccceeEE
Confidence 6667777776666543
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=2.4e-12 Score=70.89 Aligned_cols=62 Identities=31% Similarity=0.662 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHHhCCCCCcceehHHHHHHH
Q 037787 16 ELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPD----QLETLIQKADTNSNGLVEFSEFVALV 77 (163)
Q Consensus 16 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~l~~~~d~~~~g~i~~~ef~~~l 77 (163)
+++.+|..+|.+++|.|+.+||..++..++...+.+ .++.+++.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999988766544 45556999999999999999998764
No 20
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=4.6e-12 Score=82.96 Aligned_cols=105 Identities=21% Similarity=0.343 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCC-------CC
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSK-------SP 87 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~-------~~ 87 (163)
.....+|..+|.+++|.|+..||..++..+......+.+.-.|+.+|.+++|+|+.+|++.++........ ..
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 44567899999999999999999998888777777777888899999999999999999999986544332 22
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 88 YSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 88 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
..++.+..+|..+|.|+||.||.+||...+..
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 24567889999999999999999999998774
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.40 E-value=3.9e-12 Score=73.70 Aligned_cols=68 Identities=25% Similarity=0.438 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFD-RDGNG-FITAAELAHSMAK-----LGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
...+..+|+.+| .+++| .|+.++|+.++.. +|...++++++.+++.+|++++|.|+|++|+.++....
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 346889999998 79999 6999999999999 88888999999999999999999999999999988754
No 22
>PTZ00183 centrin; Provisional
Probab=99.38 E-value=3.1e-11 Score=77.72 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=85.8
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHH
Q 037787 51 DQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL-GHELTAEEL 129 (163)
Q Consensus 51 ~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~ 129 (163)
+++..+|..+|.+++|.|+..+|..++... ........+..+|..+|.+++|.|+.++|..++... ........+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~----g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 92 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSL----GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEI 92 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHH
Confidence 357788999999999999999999998743 122356779999999999999999999999988763 334667889
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 130 TGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 130 ~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
..+|+.+|.+++|.|+..+|..++..
T Consensus 93 ~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999999999999875
No 23
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.37 E-value=4.7e-11 Score=73.46 Aligned_cols=142 Identities=23% Similarity=0.387 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHhhcCCC-----------CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 037787 9 LDDDQIAELREIFRSFDRNN-----------DGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALV 77 (163)
Q Consensus 9 l~~~~~~~~~~~f~~~d~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l 77 (163)
++..++-++...|+.+.++- .-.++.+.+..+ ..+.-++-. ++++..+..++.|.+++++|+.++
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELkenpfk---~ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKENPFK---RRICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcChHH---HHHHHHhccCCCCcccHHHHHHHH
Confidence 55666777777777765421 123444444332 334334443 567888889999999999999999
Q ss_pred hHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHHH----HHHhhCCCCCCceeHHHHHHH
Q 037787 78 APELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE-LTAEELTG----MIREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~----~~~~~d~~~~g~i~~~eF~~~ 152 (163)
+.... ..+..-.+..+|+.+|-++|+.|...++...+..+... ++++++.. ++...|.+++|++++.+|...
T Consensus 98 SV~sE---~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 98 SVFSE---MAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred HHHHh---hChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 86542 22244567789999999999999999999999986433 78777554 566779999999999999999
Q ss_pred HHHHh
Q 037787 153 ITSAA 157 (163)
Q Consensus 153 l~~~~ 157 (163)
+.+.+
T Consensus 175 i~raP 179 (189)
T KOG0038|consen 175 ILRAP 179 (189)
T ss_pred HHhCc
Confidence 88754
No 24
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.35 E-value=1.5e-11 Score=72.73 Aligned_cols=72 Identities=25% Similarity=0.398 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
..++++++..+..+|..+|.+++|.|+..++..+++..+ ++.+++..++..++.+.+|.|++++|+.++...
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 468899999999999999999999999999999999865 678899999999999999999999999988753
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.35 E-value=9e-12 Score=72.11 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 12 DQIAELREIFRSFDR-NNDGSLTQLELGSLLRS-LGLKPSP-DQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 12 ~~~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
..+..+..+|+.+|+ +++|.|+..+|..++.. ++-.++. +++..+++.+|.+++|.|+|+||+.++...
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 456789999999999 99999999999999998 8766777 899999999999999999999999998754
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.33 E-value=2e-11 Score=70.69 Aligned_cols=69 Identities=25% Similarity=0.497 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 12 DQIAELREIFRSFD-RNNDG-SLTQLELGSLLRS-----LGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 12 ~~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
.-+..+.++|..+| ++++| .|+..+|..+++. ++..++.+++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34678999999998 79999 5999999999998 8888899999999999999999999999999998753
No 27
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.33 E-value=1.9e-11 Score=70.78 Aligned_cols=67 Identities=22% Similarity=0.483 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 91 EQLRQLFRMFDR-DG-NGFITAAELAHSMAK---LGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 91 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
..+..+|+.++. ++ +|.|+.+||+.++.. +|..++++++..+++.+|.+++|.|+|.+|+.++...+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 457789999998 67 899999999999973 68889999999999999999999999999999988754
No 28
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.31 E-value=1.2e-10 Score=73.88 Aligned_cols=100 Identities=28% Similarity=0.355 Sum_probs=86.2
Q ss_pred HHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHH
Q 037787 52 QLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG-HELTAEELT 130 (163)
Q Consensus 52 ~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~ 130 (163)
+++..|..+|.+++|.|+..++..+++. . ....+...+.+++..+|. +.|.|+..+|..++...- ..-+++++.
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~-l---g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRS-L---GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHH-c---CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 4567788899999999999999999983 2 233467789999999999 999999999999998743 446789999
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 131 GMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 131 ~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
.+|+.||.+++|.|+..++...+...
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhh
Confidence 99999999999999999999998753
No 29
>PTZ00184 calmodulin; Provisional
Probab=99.30 E-value=1.4e-10 Score=73.88 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHH
Q 037787 52 QLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL-GHELTAEELT 130 (163)
Q Consensus 52 ~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~ 130 (163)
.+...|..+|.+++|.|++++|..++.... .....+.+..+|..+|.+++|.|+.++|..++... ........+.
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLG----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhC----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 466788999999999999999999885432 22346788999999999999999999999998864 2334567789
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 131 GMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 131 ~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
.+|..+|.+++|.|+..+|..++...
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999999999999999999988754
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.29 E-value=3.9e-11 Score=70.67 Aligned_cols=68 Identities=24% Similarity=0.468 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFDR-DG-NGFITAAELAHSMAK-----LGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
...+..+|..+|. ++ +|.|+.+|++.++.. +|..+++++++.++..+|.+++|.|++++|+.++...+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4568899999997 87 699999999999986 46678999999999999999999999999999988754
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.28 E-value=4.1e-11 Score=63.25 Aligned_cols=52 Identities=44% Similarity=0.710 Sum_probs=49.1
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 104 GNGFITAAELAHSMAKLGHE-LTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
.+|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999875
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.27 E-value=6.9e-11 Score=69.34 Aligned_cols=68 Identities=25% Similarity=0.517 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hCC----CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFD-RDGNG-FITAAELAHSMAK-LGH----ELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
.+.+.++|+.+| .+++| .|+.+||+.++.. +|. ..++++++.++..+|.+++|.|++++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 456889999997 99999 5999999999986 443 45889999999999999999999999999988753
No 33
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-10 Score=83.52 Aligned_cols=139 Identities=22% Similarity=0.410 Sum_probs=105.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCC-------
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSLLRS-LGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKS------- 86 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~------- 86 (163)
..+.+-|..+|...+|.++..+....+.. .+++++-.-+.- .....+.+|.|.|.+.+..+.........
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 45778899999999999999999988865 466666332221 22234567899999988877642211110
Q ss_pred -CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 87 -PYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL----GHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 87 -~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
.-....++.+|..+|.|+.|.||.+||+++++-+ ...++.+++.++.+.+|.|+||.|+++||+..++-
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 0013457789999999999999999999998764 34488999999999999999999999999998864
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=9.9e-11 Score=68.69 Aligned_cols=67 Identities=16% Similarity=0.438 Sum_probs=57.4
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 91 EQLRQLFRMFD-RDGNG-FITAAELAHSMAK-L----GHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 91 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
..+.++|+.+| .+++| .|+.+||+.++.. . +...++.+++.+++.+|.+++|.|+|.||+.++....
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 45778899999 78998 5999999999976 2 2335778999999999999999999999999998743
No 35
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.22 E-value=2.9e-10 Score=74.53 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=85.7
Q ss_pred HHHHHHhhcCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCC---CcHH
Q 037787 17 LREIFRSFDRNNDGS-LTQLELGSLLRSLGLKPSPD-QLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSP---YSEE 91 (163)
Q Consensus 17 ~~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~---~~~~ 91 (163)
..+++..++.+++|. |+.++|...+.........+ .++-+|+.||.+++|.|+.+++..++.......... ...+
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 456888999988888 99999999998766555544 789999999999999999999999999877544432 1123
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 037787 92 QLRQLFRMFDRDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 92 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 120 (163)
.+...|..+|.++||.|+.+|+..++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 45678999999999999999999998753
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=2.6e-10 Score=66.91 Aligned_cols=69 Identities=30% Similarity=0.563 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHH
Q 037787 13 QIAELREIFRSFD-RNNDG-SLTQLELGSLLRS-LG----LKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPEL 81 (163)
Q Consensus 13 ~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 81 (163)
.+..+.++|..+| .+++| .|+..+|..+++. ++ ..++.+++..+++.+|.+++|.|+|++|+.++....
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3577999999997 99999 5999999999975 43 356889999999999999999999999999887543
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=2.2e-10 Score=67.75 Aligned_cols=66 Identities=30% Similarity=0.464 Sum_probs=59.9
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
....+..+|..+|.+++|.|+.++++.++...+ ++.+++..++..+|.+++|.|++++|+.++...
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 345688999999999999999999999999876 788999999999999999999999999988764
No 38
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.21 E-value=3e-10 Score=82.06 Aligned_cols=136 Identities=18% Similarity=0.335 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCCCcceehHHHHHHHhHHHhcC
Q 037787 9 LDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA----DTNSNGLVEFSEFVALVAPELLSS 84 (163)
Q Consensus 9 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~g~i~~~ef~~~l~~~~~~~ 84 (163)
++.++.-.+...|+.+|++++|.++.+++...-.. ..+..-+.++|+.. -...+|.++|++|+.++.+.....
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~ 348 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD 348 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC
Confidence 44445555666699999999999999999876443 34556688999833 244578899999999998765332
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------CCC--CCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 037787 85 KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL-------GHE--LTAEELTGMIREADTDGDGRISFQEFAQ 151 (163)
Q Consensus 85 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~~--~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (163)
+...++..|+.+|.+++|.|+..|++.++... |.. .-+..+.+++..+.+...++|++.+|..
T Consensus 349 ----t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 ----TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ----CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 45679999999999999999999998887642 222 2366788899999888899999999986
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.20 E-value=2e-10 Score=63.31 Aligned_cols=61 Identities=38% Similarity=0.562 Sum_probs=55.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 94 RQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 94 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
+.+|..+|++++|.|+.+|++.++...| .+.+++..++..+|.+++|.|++.+|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999999999999999887 588899999999999999999999999988654
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.20 E-value=2.1e-10 Score=66.71 Aligned_cols=70 Identities=24% Similarity=0.542 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 11 DDQIAELREIFRSFDR--NNDGSLTQLELGSLLRS-LGLK----PSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 11 ~~~~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
+++++.+..+|..+|+ +++|.|+..+|..+++. ++.. ++.+++..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678889999999999 89999999999999976 4543 358899999999999999999999999998754
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.20 E-value=2.3e-10 Score=67.36 Aligned_cols=68 Identities=28% Similarity=0.487 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 13 QIAELREIFRSFDR-NN-DGSLTQLELGSLLRS-----LGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 13 ~~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
.+..+..+|..+|. ++ +|.|+..++..++.. ++..++.+++..+++.++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46678999999997 87 699999999999986 4667899999999999999999999999999988643
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.19 E-value=3e-10 Score=65.80 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 12 DQIAELREIFRSFDR-NN-DGSLTQLELGSLLRS---LGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 12 ~~~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
+.+..+-.+|..++. ++ +|.|+..||..++.. +|..++.+++..+++.+|.+++|.|+|++|+.++...
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 456788899999998 67 899999999999963 6888999999999999999999999999999988754
No 43
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=3.8e-10 Score=66.22 Aligned_cols=69 Identities=29% Similarity=0.495 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHH
Q 037787 13 QIAELREIFRSFD-RNNDG-SLTQLELGSLLRSL-----GLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPEL 81 (163)
Q Consensus 13 ~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 81 (163)
.+..+.++|+.+| .+++| .|+..||..++... ....+..++..+++.+|.+++|.|+|+||+.++....
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3678899999999 78998 59999999999762 3345778999999999999999999999999987543
No 44
>PF14658 EF-hand_9: EF-hand domain
Probab=99.19 E-value=2e-10 Score=61.75 Aligned_cols=61 Identities=23% Similarity=0.460 Sum_probs=57.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CceeHHHHHHHHHH
Q 037787 95 QLFRMFDRDGNGFITAAELAHSMAKLGH-ELTAEELTGMIREADTDGD-GRISFQEFAQAITS 155 (163)
Q Consensus 95 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l~~ 155 (163)
..|..||++++|.|...++..+|+.++. ..++.+++.+.+.+|+++. |.|++++|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999988 7899999999999999998 99999999999875
No 45
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.17 E-value=8.9e-10 Score=88.94 Aligned_cols=141 Identities=23% Similarity=0.482 Sum_probs=114.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCcceehHHHHH
Q 037787 3 NKQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPS-------PDQLETLIQKADTNSNGLVEFSEFVA 75 (163)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~l~~~~d~~~~g~i~~~ef~~ 75 (163)
.++..+.|++.+.++.-+|..||++.+|.++..+|...|+.+|++++ ..+++.++..+|++.+|+|+..+|+.
T Consensus 2241 arn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2241 ARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred hhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 46788899999999999999999999999999999999999998652 23689999999999999999999999
Q ss_pred HHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC----C----CCCceeHH
Q 037787 76 LVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADT----D----GDGRISFQ 147 (163)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----~----~~g~i~~~ 147 (163)
++....-.+. .....++.+|+.+|. +.-+|+.+++.+. ++++.++.++..+-+ . ..+.+.|.
T Consensus 2321 fmi~~ETeNI--~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~ 2390 (2399)
T KOG0040|consen 2321 FMISKETENI--LSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYK 2390 (2399)
T ss_pred HHHhcccccc--cchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHH
Confidence 9976442221 234589999999998 8889999888665 677777776665532 1 23468899
Q ss_pred HHHHHH
Q 037787 148 EFAQAI 153 (163)
Q Consensus 148 eF~~~l 153 (163)
+|++.+
T Consensus 2391 dfv~sl 2396 (2399)
T KOG0040|consen 2391 DFVNSL 2396 (2399)
T ss_pred HHHHHH
Confidence 998765
No 46
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=4.6e-10 Score=65.15 Aligned_cols=68 Identities=26% Similarity=0.420 Sum_probs=58.3
Q ss_pred HHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRM-FDRDGNG-FITAAELAHSMAKL-----GHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
...+..+|+. .|.+++| .|+.+||+.++... +...++.+++.+++.+|.|++|.|+|++|+.++...+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3467888999 6788876 99999999999986 3346788999999999999999999999999988754
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.16 E-value=3.1e-10 Score=66.01 Aligned_cols=68 Identities=22% Similarity=0.398 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFDR--DGNGFITAAELAHSMAK-LGHE----LTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
...+..+|..+|. +++|.|+.++|..++.. +|.. .+.++++.++..+|.+++|.|++++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4567889999999 89999999999999986 5543 4589999999999999999999999999987653
No 48
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.4e-09 Score=68.03 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHH
Q 037787 50 PDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK-LGHELTAEE 128 (163)
Q Consensus 50 ~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~ 128 (163)
.++++..|..++.+.+|.|++.++...+...- .....+.+..+..-.|.++.|.|+.++|...+.. ++..-+.++
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG----FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALG----FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcC----CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHH
Confidence 36788999999999999999999966665432 2335677888999999999999999999999876 677779999
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 129 LTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 129 ~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
+..+|+.+|.+++|+|++.+|+.....
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHHHH
Confidence 999999999999999999999988765
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.15 E-value=4.1e-10 Score=60.69 Aligned_cols=61 Identities=51% Similarity=0.933 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAI 153 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (163)
+..+|..+|.+++|.|+.+++..++...+.+.+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999988999999999999999999999999999875
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=99.14 E-value=1e-09 Score=83.88 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=88.1
Q ss_pred cccHHHHHHHHHH--hCC-CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHH---HHHHHHhhcCCC
Q 037787 31 SLTQLELGSLLRS--LGL-KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQ---LRQLFRMFDRDG 104 (163)
Q Consensus 31 ~i~~~e~~~~l~~--~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~---~~~~f~~~D~~~ 104 (163)
.++.+++...... ..+ ....+++.+.|..+|.+++|.+ +.. ++.... . ...+... +..+|..+|.++
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~---ilrslG-~--~~pte~e~~fi~~mf~~~D~Dg 192 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGS---IFVSCS-I--EDPVETERSFARRILAIVDYDE 192 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHH---HHHHhC-C--CCCCHHHHHHHHHHHHHhCCCC
Confidence 4555665544332 111 1123467788999999999986 222 222211 0 1223333 789999999999
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 105 NGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 105 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
+|.|+.+||..++..++...+++++..+|+.+|.+++|.|+++||...|...
T Consensus 193 dG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 193 DGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 9999999999999998877899999999999999999999999999998873
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.14 E-value=3.8e-10 Score=59.47 Aligned_cols=51 Identities=31% Similarity=0.666 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 28 NDGSLTQLELGSLLRSLGLK-PSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 28 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
.+|.|+.++|..++..+|.. ++.+++..++..+|.+++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37899999999999888999 9999999999999999999999999999875
No 52
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.13 E-value=3.9e-10 Score=62.12 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=54.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 18 REIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 18 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
+++|..+|++++|.|+..++..++..++. +.+++..++..++.+++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56899999999999999999999998764 7888999999999999999999999998864
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.10 E-value=9.2e-10 Score=59.29 Aligned_cols=61 Identities=38% Similarity=0.748 Sum_probs=56.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 037787 17 LREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALV 77 (163)
Q Consensus 17 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l 77 (163)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.04 E-value=4.2e-09 Score=61.12 Aligned_cols=69 Identities=26% Similarity=0.477 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 12 DQIAELREIFRS-FDRNNDG-SLTQLELGSLLRSL-----GLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 12 ~~~~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
..+..+..+|.. +|+++++ .|+..||..++... +....+.++..++..+|.+++|.|+|+||+.++...
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457789999999 6788876 99999999999774 334567889999999999999999999999988653
No 55
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=2.4e-09 Score=65.02 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=54.8
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
....+...|..+|.|+||.|+.+|+..+. + ...+..+..++..+|.|++|.||++||+..+..
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 35568899999999999999999999886 2 245677899999999999999999999999843
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=99.01 E-value=3.3e-09 Score=57.07 Aligned_cols=61 Identities=28% Similarity=0.522 Sum_probs=57.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-cceehHHHHHHHhH
Q 037787 19 EIFRSFDRNNDGSLTQLELGSLLRSLGL-KPSPDQLETLIQKADTNSN-GLVEFSEFVALVAP 79 (163)
Q Consensus 19 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~ef~~~l~~ 79 (163)
.+|..+|.++.|.|...++..+|+.++. .+++.+++.+.+.+|.++. |.|+++.|+..++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999998 9999999999999998887 99999999999864
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.99 E-value=4.7e-09 Score=63.75 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 037787 11 DDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALV 77 (163)
Q Consensus 11 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l 77 (163)
+.....+.-.|..+|.|++|.|+..|+..+. ..+....+..++..+|.|++|.||++||+.++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4445566666777777777777777776554 23444556666777777777777777777666
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.97 E-value=5.5e-09 Score=60.66 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFDRD--GNGFITAAELAHSMA-KLGHELT----AEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
...+..+|+.++.. ++|.|+.+||+.++. .+|..++ ++++..++..+|.+++|.|+|++|+.++....
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 34677889999866 479999999999997 4565566 89999999999999999999999999988753
No 59
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.87 E-value=6.8e-08 Score=69.71 Aligned_cols=129 Identities=18% Similarity=0.267 Sum_probs=93.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCC-H--HHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHH
Q 037787 19 EIFRSFDRNNDGSLTQLELGSLLRSLGLKPS-P--DQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQ 95 (163)
Q Consensus 19 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-~--~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 95 (163)
.-|..+|+..+|.|+..+|..++-......+ + ..++++-+.++.. +..|+++||..++.-..... ..+....
T Consensus 322 lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~----dfd~Al~ 396 (489)
T KOG2643|consen 322 LEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLN----DFDIALR 396 (489)
T ss_pred HHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhh----HHHHHHH
Confidence 3578888888899999999888766443222 2 2456777777655 45599999888876433111 1222222
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 96 LFRMFDRDGNGFITAAELAHSMAK-LGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 96 ~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
+|.. ..+.|+..+|+++... .|.++++..++-+|+.||.|+||.++.+||+..|++.
T Consensus 397 fy~~----Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 397 FYHM----AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHH----cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 3322 3466899999998877 6888998999999999999999999999999999875
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.87 E-value=2.7e-08 Score=57.71 Aligned_cols=69 Identities=22% Similarity=0.405 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 12 DQIAELREIFRSFDRN--NDGSLTQLELGSLLR-SLGLKPS----PDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 12 ~~~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
.-+..+-.+|..++.. .+|.|+..+|..++. .++..++ .+++..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4467788899999865 478999999999996 4554455 8899999999999999999999999988754
No 61
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.82 E-value=4.4e-08 Score=63.74 Aligned_cols=68 Identities=40% Similarity=0.615 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
.+.+..+|..+|.+.||+|+..|++.++..+|.+.|---++.+++.+|.|.+|+|++.+|+-+++...
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 45678899999999999999999999999999988888899999999999999999999999988764
No 62
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.81 E-value=6.1e-08 Score=65.13 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 14 IAELREIFRSFDRNNDGSLTQLELGSLLRSLG---LKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
.+.+..+|.+.|.+.++.||..++.+++..-. +.-+.++-+.-|+..|.+++|.|+|+||..-+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 45788899999999999999999988775421 122334456678888999999999999986664
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.79 E-value=1.2e-07 Score=68.00 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 037787 51 DQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELT 130 (163)
Q Consensus 51 ~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 130 (163)
..++.+|..+|.+++|.++..+....+...... ....+....+|...|.+.+|.++.+||+..+.. .+.++-
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~---~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~ 85 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP---KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELY 85 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC---CCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHH
Confidence 357899999999999999999999887754432 245778899999999999999999999999885 457788
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 131 GMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 131 ~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
.+|...|.+.+|.|..+|...+++..
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDL 111 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHh
Confidence 99999999999999999999988764
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.78 E-value=1.2e-07 Score=61.66 Aligned_cols=110 Identities=21% Similarity=0.409 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCC
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSP 87 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 87 (163)
.|+..+|+.+..+|..+|.+.||+|+..|+..++..+|.+-|.--+..+....|.+.+|.|++.+|+-.++........
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~- 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ- 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc-
Confidence 5788899999999999999999999999999999999998888889999999999999999999999988865542221
Q ss_pred CcHHHHHHHHHh--hcCCCCCcccHHHHHHHHHH
Q 037787 88 YSEEQLRQLFRM--FDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 88 ~~~~~~~~~f~~--~D~~~~g~i~~~e~~~~l~~ 119 (163)
....+..+-+. .|...-|+.....|-.+=..
T Consensus 171 -~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 171 -EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred -cchHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 12333344333 67778887777776554433
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.72 E-value=1.1e-07 Score=56.65 Aligned_cols=69 Identities=23% Similarity=0.421 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.++++|..++..+|..++. .+|.|+..+...++...+ ++.+.+..||...|.+++|.++++||+-++.-
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4788999999999999985 689999999999998775 55678999999999999999999999988863
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.65 E-value=5.5e-07 Score=51.95 Aligned_cols=65 Identities=20% Similarity=0.393 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 91 EQLRQLFRMFDRDGNGFITAAELAHSMAKL-----GHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 91 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
..+..+|+.+. .+.+.++..||+.++..- +..-.+..++.+++.+|.|+||.|+|.||+.++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45677899997 456799999999999762 333568889999999999999999999999998764
No 67
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.1e-06 Score=67.69 Aligned_cols=146 Identities=21% Similarity=0.381 Sum_probs=117.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH-----
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP----- 79 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~----- 79 (163)
+.+.+|.++..+-...|..+ +.+.|+|+..+-+.++-..|++. ..+..||..-|.|+||+++..||.-.|.-
T Consensus 6 n~WavT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~--~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 6 NPWAVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPT--PVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CccccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCCh--HHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 57889999999988899888 55789999999999888777554 47889999999999999999999987762
Q ss_pred --------------------------------------------------------------------HH----------
Q 037787 80 --------------------------------------------------------------------EL---------- 81 (163)
Q Consensus 80 --------------------------------------------------------------------~~---------- 81 (163)
..
T Consensus 83 qG~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~ 162 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSN 162 (1118)
T ss_pred cCCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Confidence 00
Q ss_pred -----------------------hcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q 037787 82 -----------------------LSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADT 138 (163)
Q Consensus 82 -----------------------~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 138 (163)
.........-....+|..+|+...|++|...-+.+|...+ ++...+..||..-|.
T Consensus 163 spl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDv 240 (1118)
T KOG1029|consen 163 SPLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDV 240 (1118)
T ss_pred CCCCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeecc
Confidence 0000011122456789999999999999999999998877 677789999999999
Q ss_pred CCCCceeHHHHHHHHHH
Q 037787 139 DGDGRISFQEFAQAITS 155 (163)
Q Consensus 139 ~~~g~i~~~eF~~~l~~ 155 (163)
|+||+++.+||+-.|--
T Consensus 241 d~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 241 DGDGKLSADEFILAMHL 257 (1118)
T ss_pred CCCCcccHHHHHHHHHH
Confidence 99999999999876643
No 68
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.3e-06 Score=63.31 Aligned_cols=131 Identities=22% Similarity=0.329 Sum_probs=92.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh------CC--------CCC-HHHHHH--HHHHhCCCCCcceehHHHHHHHh
Q 037787 16 ELREIFRSFDRNNDGSLTQLELGSLLRSL------GL--------KPS-PDQLET--LIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 16 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~--------~~~-~~~~~~--l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
.+.-.|..+|.|++|.|+.+||......+ +. ..+ ..++.. +..-+..++++.+++++|..++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 35567899999999999999998876421 21 000 112222 33445788999999999999997
Q ss_pred HHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 79 PELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELT---AEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
... .+.++.-|..+|+...|.|+..+|..++..+...-+ .......-+.++.+ +..|++.||.+++.-
T Consensus 314 ~Lq--------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~F 384 (489)
T KOG2643|consen 314 NLQ--------EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRF 384 (489)
T ss_pred HHH--------HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHH
Confidence 653 667888899999999999999999999988642211 11344455555444 456999988887654
No 69
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.63 E-value=3.7e-07 Score=57.06 Aligned_cols=64 Identities=17% Similarity=0.449 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
+.+..+|..+|.+++|.|....++.+|...|-..++++|..+|+.+..+..|.++|..|+..+.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 4567778888888888888888888888778788888888888888777778888888887775
No 70
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.56 E-value=7.9e-07 Score=64.80 Aligned_cols=134 Identities=21% Similarity=0.267 Sum_probs=101.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHH--HHHhC------------CCCCHHHHHHH---HHHhCCCCCcceehHHHHHHH
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSL--LRSLG------------LKPSPDQLETL---IQKADTNSNGLVEFSEFVALV 77 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~--l~~~~------------~~~~~~~~~~l---~~~~d~~~~g~i~~~ef~~~l 77 (163)
-.+.++|..+++.++|.|+..++.+- +..+. .-.+-+-...+ |..+|++++|.|+-++.....
T Consensus 225 tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 225 TVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred HHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 35788999999999999999887552 22211 01122222333 677899999999999887776
Q ss_pred hHHHhcCCCCCcHHHHHHHHH----hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037787 78 APELLSSKSPYSEEQLRQLFR----MFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAI 153 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (163)
.+.. +...+.++|. .+-...+|.|+.++|..++-+....-++.-++.+|+.+|.+++|.++..+.-.+.
T Consensus 305 d~tl-------t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 305 DHTL-------TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred ccch-------hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHH
Confidence 4332 5667889999 3334578999999999999998777888889999999999999999998877666
Q ss_pred HH
Q 037787 154 TS 155 (163)
Q Consensus 154 ~~ 155 (163)
..
T Consensus 378 ee 379 (493)
T KOG2562|consen 378 EE 379 (493)
T ss_pred HH
Confidence 54
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=1.6e-07 Score=42.50 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=9.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHH
Q 037787 95 QLFRMFDRDGNGFITAAELAHSM 117 (163)
Q Consensus 95 ~~f~~~D~~~~g~i~~~e~~~~l 117 (163)
.+|+.+|.|++|.|+.+||..++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH
Confidence 34444444444444444444443
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.51 E-value=3.3e-06 Score=48.76 Aligned_cols=68 Identities=21% Similarity=0.389 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 12 DQIAELREIFRSFDRNNDGSLTQLELGSLLRS-----LGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 12 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
..+..+-.+|..+..+ .+.++..||..++.. +.-...+..+..++..+|.|++|.|+|.||+.++...
T Consensus 5 ~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3466788899999743 568999999999854 2333457789999999999999999999999998754
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.51 E-value=4e-06 Score=64.65 Aligned_cols=144 Identities=20% Similarity=0.340 Sum_probs=117.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCC
Q 037787 6 PMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSK 85 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 85 (163)
+.......-..+..+|+..|++.+|.++..+...++..++..+....+..+++..+..+++.+..++|..+.....
T Consensus 127 ~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~---- 202 (746)
T KOG0169|consen 127 SMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT---- 202 (746)
T ss_pred hhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc----
Confidence 4445556667889999999999999999999999999999888888899999999888899999999999876432
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCC----CCceeHHHHHHHHHHHh
Q 037787 86 SPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG--HELTAEELTGMIREADTDG----DGRISFQEFAQAITSAA 157 (163)
Q Consensus 86 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l~~~~ 157 (163)
....+..+|..+-. +.+.++.+++..++.... ...+.+.++.+++.+.... .+.++++.|..+|....
T Consensus 203 ---~rpev~~~f~~~s~-~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 203 ---KRPEVYFLFVQYSH-GKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred ---cCchHHHHHHHHhC-CCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCcc
Confidence 12267778888754 489999999999999853 2278888999998885543 45699999999998753
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.51 E-value=3.3e-07 Score=41.52 Aligned_cols=28 Identities=46% Similarity=0.838 Sum_probs=25.9
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 128 ELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 128 ~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
+++.+|+.+|.|++|.|+++||...|.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999875
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.50 E-value=1.8e-06 Score=51.50 Aligned_cols=65 Identities=29% Similarity=0.481 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 88 YSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 88 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
........+|...++ ++|.|+.++.+.++...+ ++.+.+..+|...|.+++|.++++||+-.|.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 356678889999985 689999999999999988 78899999999999999999999999987654
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.42 E-value=1.4e-05 Score=59.11 Aligned_cols=103 Identities=20% Similarity=0.340 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHH-HhCCCCCHHHHHHHH-HHhCCCCCcceehHHHHHHHhHHHhcCCCCCc
Q 037787 12 DQIAELREIFRSFDRNNDGSLTQLELGSLLR-SLGLKPSPDQLETLI-QKADTNSNGLVEFSEFVALVAPELLSSKSPYS 89 (163)
Q Consensus 12 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~l~-~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 89 (163)
.++..+.-.|...+.++...++.++|....- -++.+-...++.+++ ...|..++|.|+|+||+.+=.... . .
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~---p 106 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---A---P 106 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---C---c
Confidence 3444444444555677788899999876443 344444444554444 555688899999999998754322 1 2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 120 (163)
......+|..||+.+.|.+|.+++.+++...
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 4456789999999999999999999998754
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.41 E-value=2.1e-06 Score=63.30 Aligned_cols=121 Identities=18% Similarity=0.297 Sum_probs=67.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC------CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHH
Q 037787 19 EIFRSFDRNNDGSLTQLELGSLLRSLGL------KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQ 92 (163)
Q Consensus 19 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 92 (163)
.+|+.+|+.++|.+|.+++..++..... +...+-+.. .+.......++|.+|.+++.... .+.
T Consensus 112 ~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~~--------~E~ 180 (694)
T KOG0751|consen 112 VAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEFQ--------LEH 180 (694)
T ss_pred HHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHHH--------HHH
Confidence 3455555555555555555555544322 111222222 22223333455555555554332 234
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC-CCCCceeHHHHH
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADT-DGDGRISFQEFA 150 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~eF~ 150 (163)
.+..|+..|+.++|.||.-+|++++......+...-+++.+-.... +....+++..|.
T Consensus 181 ~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 181 AEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 5678889999999999999999999886655555556665555533 333456655443
No 78
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.39 E-value=7.2e-07 Score=62.33 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=93.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCc
Q 037787 28 NDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGF 107 (163)
Q Consensus 28 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 107 (163)
+.+.|-..+|..-++ ++.+ ..+..+|..+|.+++|.++|.+.+..+. .....+.+...++..|++|+.+.||.
T Consensus 240 kg~~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~~D~re~v~~la---vlc~p~~t~~iiq~afk~f~v~eDg~ 312 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGNGDYRETVKTLA---VLCGPPVTPVIIQYAFKRFSVAEDGI 312 (412)
T ss_pred cCCCcceeEeeeeee---cchh-hhhhhhhheecCCCCCcccHHHHhhhhe---eeeCCCCcHHHHHHHHHhcccccccc
Confidence 344555555543332 2223 4578899999999999999999887776 34567778999999999999999999
Q ss_pred ccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 108 ITAAELAHSMAK-LGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 108 i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
+...+|--+|+. +| +..-.+--+|...+...+|+|++.+|-+++...
T Consensus 313 ~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 313 SGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred cchHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 999999999987 45 444456778888888889999999999998764
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.39 E-value=7.7e-07 Score=41.05 Aligned_cols=29 Identities=52% Similarity=0.961 Sum_probs=21.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMA-KLG 121 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 121 (163)
++.+|+.+|.+++|.|+.+||..+++ .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56778888888888888888888887 454
No 80
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.36 E-value=1.6e-05 Score=49.04 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCC--CCCcccHHHHHHHHHHhCCC---C
Q 037787 50 PDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRD--GNGFITAAELAHSMAKLGHE---L 124 (163)
Q Consensus 50 ~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~~~~~~---~ 124 (163)
..+++.+|..+|..++|.|++.+--.++++.- ..++...+.......+++ +-..|+.++|.-++...+.. .
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALG----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhc----CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 46899999999999999999999988887643 334666777777777666 55789999999988876433 6
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 125 TAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 125 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
+-+++-+-++.+|++++|.|...++...|..
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 7788888899999999999999999988876
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.33 E-value=4.5e-06 Score=42.47 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 31 SLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 31 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.++..|+..+|+.+++.+.+..+..+|+.+|++++|.+..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999988763
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.32 E-value=1.3e-06 Score=40.27 Aligned_cols=30 Identities=50% Similarity=0.834 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q 037787 16 ELREIFRSFDRNNDGSLTQLELGSLLR-SLG 45 (163)
Q Consensus 16 ~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 45 (163)
+++.+|..+|.+++|.|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467888889999999999999988887 454
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.31 E-value=3.7e-06 Score=61.25 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 52 QLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 52 ~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
.++.+|+.+|.+.+|.|+.+||...+.-...-...+.....+..+.+.+|-++||.|+..||..++.-
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 46667777777777777777777776655555555556677777777777777777777777776654
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.30 E-value=6.2e-06 Score=41.98 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 107 FITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
.++..|++.+|+.+.+.+++.-+..+|+..|.+++|.+..+||..+++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3688899999999999999999999999999999999999999988764
No 85
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.28 E-value=1.7e-05 Score=59.82 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCC-----CcceehHHHHHHHhH
Q 037787 6 PMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRS-LGLKPSPDQLETLIQKADTNS-----NGLVEFSEFVALVAP 79 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~-----~g~i~~~ef~~~l~~ 79 (163)
..++.+..++.+.++|...|.|.+|.++-.|+..+-.. ++.++...++..+....+..- ...++...|+.+..-
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 45688999999999999999999999999999988754 677888888777766554321 344667777766543
Q ss_pred HHhcCCCC--------------------------------------CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q 037787 80 ELLSSKSP--------------------------------------YSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG 121 (163)
Q Consensus 80 ~~~~~~~~--------------------------------------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 121 (163)
.....++. .-.+-+..+|..+|.++||.++.+|+..++..++
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 11111100 0123467789999999999999999999999875
Q ss_pred CCCCH--HHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 122 HELTA--EELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 122 ~~~~~--~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
..... .+.+. --.+..|.++++.|+..+.-.+
T Consensus 346 ~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~WsL~T 379 (625)
T KOG1707|consen 346 GSPWTSSPYKDS----TVKNERGWLTLNGFLSQWSLMT 379 (625)
T ss_pred CCCCCCCccccc----ceecccceeehhhHHHHHHHHh
Confidence 44211 11111 1123578899998887766543
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.27 E-value=8.1e-06 Score=59.78 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=50.6
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 85 KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 85 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
........+..+|+.+|.+++|.|+.+||.. ++.+|+.+|.|++|.|+++||...+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3444567788999999999999999999942 5788999999999999999999988754
No 87
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.23 E-value=2.3e-06 Score=37.32 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=14.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHH
Q 037787 94 RQLFRMFDRDGNGFITAAELAHS 116 (163)
Q Consensus 94 ~~~f~~~D~~~~g~i~~~e~~~~ 116 (163)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666554
No 88
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.21 E-value=1.4e-05 Score=49.70 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHH----
Q 037787 18 REIFRSFDRNNDGSLTQLELGSLLRSLGL-KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQ---- 92 (163)
Q Consensus 18 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~---- 92 (163)
+++...+..+|.|.+|.++|..++.-+.- .|-.-.+...|..+|-++++.|.-++....+........ ..+.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eL---s~eEv~~i 150 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDEL---SDEEVELI 150 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccC---CHHHHHHH
Confidence 45778888899999999999998876432 233334556778899999999999999988876543222 3333
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 120 (163)
..++..-.|.++||.|+..+|..++...
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 3556666799999999999999988753
No 89
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.10 E-value=1.9e-05 Score=58.71 Aligned_cols=73 Identities=25% Similarity=0.494 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 6 PMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKP---SPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
-..||++|+..++..|...| +++|.++..++..++...+... ..++++.++...+.+.+|.|+|++|+..+..
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45799999999999999999 9999999999999998876543 5788999999999999999999999997653
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.05 E-value=3e-05 Score=56.86 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 45 GLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 45 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
+.......+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||..++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-----------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-----------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4566778899999999999999999999942 367899999999999999999999875
No 91
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.04 E-value=4.7e-05 Score=63.01 Aligned_cols=99 Identities=15% Similarity=0.316 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcC---CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCC
Q 037787 51 DQLETLIQKADTNSNGLVEFSEFVALVAPELLSS---KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG--HELT 125 (163)
Q Consensus 51 ~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~---~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~ 125 (163)
.++..+|..||.+.+|.+++.+|..|++.....- ........++.+....||+.+|+|+..+...+|..-. .-.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 3567889999999999999999999998642111 0111223688999999999999999999999887632 2267
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHH
Q 037787 126 AEELTGMIREADTDGDGRISFQEFA 150 (163)
Q Consensus 126 ~~~~~~~~~~~d~~~~g~i~~~eF~ 150 (163)
..+++..|+.++. +...|+-.+..
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELY 2356 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHHHH
Confidence 7799999999988 44556655543
No 92
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.00 E-value=1.2e-05 Score=35.03 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=13.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHH
Q 037787 18 REIFRSFDRNNDGSLTQLELGSL 40 (163)
Q Consensus 18 ~~~f~~~d~~~~g~i~~~e~~~~ 40 (163)
+..|..+|.|++|.|+..||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666666666666666553
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.83 E-value=9.5e-06 Score=49.23 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQ 151 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (163)
....+...|..+|.++||.|+..|+..+...+ ...+.-+..++...|.|++|.|++.|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 45678888999999999999999998887654 23445588899999999999999999864
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.76 E-value=1e-05 Score=49.07 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHH
Q 037787 47 KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELA 114 (163)
Q Consensus 47 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 114 (163)
..-...+.-.|..+|.|++|.|+-.|+..+.....+ .+..+..++...|.|+||.||..|..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~------~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP------PEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST------TGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh------hHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 344555666788888888888888887777664321 23456778888888888888888764
No 95
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00021 Score=53.11 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.++.+++++.+.+-.-|+.+..|.+|+|+..--+.++.+.. +.-.|+..||+..|.+.+|.+++.|||..+.-
T Consensus 221 ~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 221 TPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred CccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 46789999999999999999999999999988888887654 45568999999999999999999999999874
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.51 E-value=0.00043 Score=39.55 Aligned_cols=64 Identities=22% Similarity=0.491 Sum_probs=49.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHHHh
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMAKL-GH-ELTAEELTGMIREADTD----GDGRISFQEFAQAITSAA 157 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~~ 157 (163)
+..+|..+.. +.+.|+.++|..+|... +. ..+...+..++..+.++ ..+.+++++|..+|....
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 5677888854 78888888888888763 33 36788888888888654 368999999999998763
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.50 E-value=0.00054 Score=51.32 Aligned_cols=64 Identities=30% Similarity=0.580 Sum_probs=55.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 91 EQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE---LTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 91 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
..+...|...| ++.|+|+..++..++...+.. ...+++++++...+++.+|.|++++|+..+.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 34667788888 999999999999999987654 45889999999999999999999999997665
No 98
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.37 E-value=0.00023 Score=48.34 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCC--CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 91 EQLRQLFRMFDRDGNGFITAAELAHSMAK-LGHE--LTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 91 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~--~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
..+..+|...|.+.||.||..|+++.+.. .... -+.++-+..|+..|++++|.|+.++|.-.+..
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 45666777777777777777777666543 1111 22334455666777777777777777655444
No 99
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.32 E-value=0.0011 Score=37.86 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCC----CCcceehHHHHHHHhH
Q 037787 17 LREIFRSFDRNNDGSLTQLELGSLLRSLGL--KPSPDQLETLIQKADTN----SNGLVEFSEFVALVAP 79 (163)
Q Consensus 17 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~l~~ 79 (163)
+..+|..+.. +.+.|+.++|..+|+.-.. ..+.+.+..++..+..+ ..+.++++.|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5677888855 6778888888888876433 34777888888877543 3577888888888753
No 100
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.21 E-value=0.0019 Score=45.73 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHH
Q 037787 14 IAELREIFRSFDRNNDGSLTQLELGSLLRSL-GLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQ 92 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 92 (163)
...+...|..+|.+++|.++.-+-...+.-+ +-+.+..-++-.|.+++...+|.+.-.+|.-++...... ..-.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv-----~~l~ 332 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV-----EVLR 332 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc-----ceee
Confidence 3678889999999999998887766555443 445677789999999999999999887776666543211 2234
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMAKLG 121 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 121 (163)
+..+|..++...+|+|+.++|+.+....+
T Consensus 333 v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 333 VPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 56789999999999999999999987643
No 101
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0045 Score=37.17 Aligned_cols=58 Identities=33% Similarity=0.619 Sum_probs=43.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHh------CC---C-CCHHHHHHH----HHhhCCCCCCceeHHHHHHH
Q 037787 95 QLFRMFDRDGNGFITAAELAHSMAKL------GH---E-LTAEELTGM----IREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 95 ~~f~~~D~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~~~~----~~~~d~~~~g~i~~~eF~~~ 152 (163)
-.|.+.|.++++.|+.-|+..++... |. + +++.+++.+ ++.-|.|++|.|+|-||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 46889999999999999998887643 22 1 456665555 45557899999999999864
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.07 E-value=0.0011 Score=28.92 Aligned_cols=26 Identities=42% Similarity=0.777 Sum_probs=15.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH
Q 037787 17 LREIFRSFDRNNDGSLTQLELGSLLR 42 (163)
Q Consensus 17 ~~~~f~~~d~~~~g~i~~~e~~~~l~ 42 (163)
++.+|..+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34556666666666666666666554
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.06 E-value=0.0013 Score=28.65 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=13.1
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHH
Q 037787 130 TGMIREADTDGDGRISFQEFAQAIT 154 (163)
Q Consensus 130 ~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (163)
..+|..+|.+++|.|++.+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3445555555555555555555543
No 104
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0022 Score=47.99 Aligned_cols=63 Identities=30% Similarity=0.468 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAIT 154 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (163)
++.....|+.+.+|-.|.|+.+--+.++.... +.-.|+.+||+.-|.+.||.+++.|||..|-
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 45566779999999999999999999998765 6678899999999999999999999998874
No 105
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.87 E-value=0.045 Score=35.53 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC---CCCCcceehHHHHHHHhHHHh-------
Q 037787 13 QIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKAD---TNSNGLVEFSEFVALVAPELL------- 82 (163)
Q Consensus 13 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d---~~~~g~i~~~ef~~~l~~~~~------- 82 (163)
....+++-...+|+|+||.|..-|-...++.+|.++.-.-+-.++-... ....+.+.-. +..+......
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P-~f~Iyi~nIhk~kHGSD 83 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDP-FFRIYIKNIHKGKHGSD 83 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCC-ceeEEeecccccccCCC
Confidence 3456777788899999999999999999999998765443333221111 1111111111 1111111000
Q ss_pred ----cCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-------CCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 037787 83 ----SSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE-------LTAEELTGMIREADTDGDGRISFQEFAQ 151 (163)
Q Consensus 83 ----~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-------~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (163)
........+..+++|..++..+.+.||..|+..+++..... -+.-|...++... .+.+|.+..++...
T Consensus 84 Sg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 84 SGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRG 162 (174)
T ss_pred ccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhh
Confidence 01223346789999999999889999999999999874322 2234455555544 67789999888776
Q ss_pred HHHHHhh
Q 037787 152 AITSAAF 158 (163)
Q Consensus 152 ~l~~~~~ 158 (163)
.....-|
T Consensus 163 vYDGSlF 169 (174)
T PF05042_consen 163 VYDGSLF 169 (174)
T ss_pred hcchHHH
Confidence 6555433
No 106
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.0029 Score=51.24 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=112.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhc-
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS- 83 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~- 83 (163)
....++..+..++..+|..+.+. +|.++....+.+|.... +...-+-++|...|.+.+|.++..+|...+......
T Consensus 119 ~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 119 FVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 45568888999999999998665 88888888887776544 444467788999999999999999998777631000
Q ss_pred --------------------------------------------------------------------------------
Q 037787 84 -------------------------------------------------------------------------------- 83 (163)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (163)
T Consensus 196 ~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~ 275 (847)
T KOG0998|consen 196 NGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSP 275 (847)
T ss_pred hcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCc
Confidence
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037787 84 SKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAIT 154 (163)
Q Consensus 84 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (163)
...+.....+..+|...|.+.+|.|+..+...++...| ++...+..+|...|..+.|.+++.+|+-.+-
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 01111233456689999999999999999999998866 7888899999999999999999998876653
No 107
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.034 Score=33.50 Aligned_cols=67 Identities=24% Similarity=0.440 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH------hCC---C-CCHHHHHHH----HHHhCCCCCcceehHH
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRS------LGL---K-PSPDQLETL----IQKADTNSNGLVEFSE 72 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~------~~~---~-~~~~~~~~l----~~~~d~~~~g~i~~~e 72 (163)
..+|++++.. ..|...|.++++.++--|+..++.- .|- + ++..++..+ ++--|.|.+|.|+|.|
T Consensus 61 a~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgE 138 (144)
T KOG4065|consen 61 AKMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGE 138 (144)
T ss_pred hhCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHH
Confidence 3455555432 3467777777777777777666532 121 1 133344333 3344566677777777
Q ss_pred HHH
Q 037787 73 FVA 75 (163)
Q Consensus 73 f~~ 75 (163)
|+.
T Consensus 139 flK 141 (144)
T KOG4065|consen 139 FLK 141 (144)
T ss_pred HHh
Confidence 664
No 108
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.32 E-value=0.019 Score=43.89 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=70.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHH
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPEL 81 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 81 (163)
.+..++++++...+..|..+|.+..|.++..+....+...+...+...+.++++..+.+..|.+...+|..++....
T Consensus 583 ~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 583 IPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred cccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 35668999999999999999999999999999999999988888988999999999999899999999999987644
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.24 E-value=0.011 Score=42.42 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=41.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAIT 154 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (163)
....+..+|..+|.+.||.|+..|+..+-.. -.+.-++.+|...|...+|.|+-+|++.-+.
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 4556677777777777777777777766543 3345567777777777777777777765543
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.10 E-value=0.073 Score=34.24 Aligned_cols=62 Identities=18% Similarity=0.403 Sum_probs=46.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 19 EIFRSFDRNNDGSLTQLELGSLLRSLGL---KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 19 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
..|-.+-..+...|+...|..+++..++ .++..++.-+|..+.......|+|++|+.+|...
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3343344555668999999999998654 5788899999999876666779999999998743
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.88 E-value=0.12 Score=33.29 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=43.1
Q ss_pred cCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 101 DRDGNGFITAAELAHSMAKLGHE---LTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 101 D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
-......|+-..|..+|+..++- ++..+++-+|..+-..+...|+|++|+..|...+
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 35566789999999999987543 8889999999998666666799999999887643
No 112
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.78 E-value=0.14 Score=41.61 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=77.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH-H-HHHHH---HHhCCCCCcceehHHHHHHHhHH
Q 037787 6 PMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPD-Q-LETLI---QKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-~-~~~l~---~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
....++....++...|..+++...|.++.+++...|-.+|.+...+ . +..++ ...+.+.-|.+++.+|...+...
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 3456677788999999999999999999999999999999877542 2 33333 44444455889999999999754
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 037787 81 LLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAH 115 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 115 (163)
. ........+...|+.+-..+. .|..+++..
T Consensus 818 ~---e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 Y---EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred h---hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 3 222345667778888865554 677777766
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=95.72 E-value=0.19 Score=39.42 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=49.0
Q ss_pred CcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CC-CCHHHHHHHHHhhC-----
Q 037787 65 NGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG-HE-LTAEELTGMIREAD----- 137 (163)
Q Consensus 65 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~-~~~~~~~~~~~~~d----- 137 (163)
.|.++|++|..+.+..- .........+..+|..+-. +.+.|+.++|..+|.... .. .+.+.+..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k--~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFK--ITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred CCCcCHHHHHHHHHHhc--cccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 45677777755544321 1111235567777777743 335677777777776642 22 45555555544331
Q ss_pred --CCCCCceeHHHHHHHHHHH
Q 037787 138 --TDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 138 --~~~~g~i~~~eF~~~l~~~ 156 (163)
....+.++++.|..+|...
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred cccccccCcCHHHHHHHHcCc
Confidence 1122357888888888753
No 114
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.70 E-value=0.39 Score=39.17 Aligned_cols=121 Identities=13% Similarity=0.257 Sum_probs=86.8
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--Cc-----ceehHHHHHHHhHHHhcCCCCCcHHHHHHHH
Q 037787 25 DRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNS--NG-----LVEFSEFVALVAPELLSSKSPYSEEQLRQLF 97 (163)
Q Consensus 25 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~--~g-----~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f 97 (163)
..+..|.|....+...+.. .-..+.++..+..+.... .. ..+++.|..++.... .+..+..+|
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc-------pR~eie~iF 227 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC-------PRPEIEEIF 227 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC-------CchhHHHHH
Confidence 3466778887777766553 222355666665554222 12 256677777776544 345789999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCCCC----CCceeHHHHHHHHHH
Q 037787 98 RMFDRDGNGFITAAELAHSMAKL----------GHELTAEELTGMIREADTDG----DGRISFQEFAQAITS 155 (163)
Q Consensus 98 ~~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l~~ 155 (163)
..+..++.-++|.++|..++..- -....+.-+..++..|.++. .|.++.+.|+.++.+
T Consensus 228 ~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 228 RKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred HHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 99999988999999999999753 22256788999999998775 689999999999876
No 115
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.57 E-value=0.02 Score=44.31 Aligned_cols=52 Identities=25% Similarity=0.334 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGD 141 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 141 (163)
...+.++|+.+|.+++|.|+..++..-+..+...-..+.+.-+++.+|++.+
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 3445666666776677777666666666655444444556666666666555
No 116
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.42 E-value=0.23 Score=39.50 Aligned_cols=98 Identities=20% Similarity=0.304 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 037787 51 DQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELT 130 (163)
Q Consensus 51 ~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 130 (163)
.-+..++...|++++|.+++.+-..++..... ......+..+|+-.+..+++.+...++..+....+... ++.
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~----~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~ 208 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV----QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVY 208 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHH----hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHH
Confidence 34778899999999999999999888876542 22455677788888888999999999999998876432 677
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 131 GMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 131 ~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
.+|..+-.+ .+.++.+++..++...
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 777777443 6788888888877654
No 117
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.42 E-value=0.05 Score=39.14 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=76.5
Q ss_pred CCCHHHH----HHHHHHHHhhcCCCCCcccHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 8 NLDDDQI----AELREIFRSFDRNNDGSLTQLELGSLLRSL---GLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 8 ~l~~~~~----~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
.=+..++ .++...|..+=.+.++......+......+ -.++-..++.=||..+|.|.++.++..|...+-...
T Consensus 200 ~Ct~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk 279 (434)
T KOG3555|consen 200 ACTDQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK 279 (434)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC
Confidence 3455554 467778888755555544444443332222 223456678889999999999999999987775421
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q 037787 81 LLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 122 (163)
.+..++.+|...|..+||.|+..|.-..+...+.
T Consensus 280 --------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 280 --------NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred --------chhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 4667899999999999999999999888876653
No 118
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.31 E-value=0.039 Score=42.46 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCcceehHHHHHHHhHH
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKP----SPDQLETLIQKADTNSNGLVEFSEFVALVAPE 80 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 80 (163)
.+.+|++.-+..+..+|..+|.++||.++..|+..++......+ ..++. --.+..|.++++-|+..+...
T Consensus 305 ~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 305 QSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred cceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHHHHH
Confidence 46789999999999999999999999999999999998765443 11111 112368999999999888743
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.038 Score=43.84 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 9 LDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 9 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
.+.....++.++|+.+|+..+|.+|..+-+.+|-..+++ ...+-.||..-|.++||.++.+||+-.+.
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp--q~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP--QNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCc--hhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 344455678899999999999999999999988876654 33678899999999999999999987665
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.12 E-value=0.044 Score=46.45 Aligned_cols=61 Identities=23% Similarity=0.492 Sum_probs=52.3
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 96 LFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 96 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
.|+-+|+++.|.|+..+|..++..... .++.+++-++.....+....++|.+|+.-+..++
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~-ytqse~dfllscae~dend~~~y~dfv~rfhepa 4122 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH-YTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPA 4122 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc-chhHHHHHHHHhhccCccccccHHHHHHHhcCch
Confidence 367779999999999999999986433 6888999999999889989999999998876654
No 121
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=0.04 Score=44.93 Aligned_cols=144 Identities=23% Similarity=0.338 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhc---
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS--- 83 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~--- 83 (163)
..+++.+...+..+|..+|..++|.|+..+...++...+ +..+.+-.+|...+..+.|.++..+|...++.....
T Consensus 3 ~~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~ 80 (847)
T KOG0998|consen 3 LGLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSG 80 (847)
T ss_pred CCCCCCccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcc
Confidence 344555567788999999999999999999998888655 456677888999998888999999999888741000
Q ss_pred ------------------------------C-----------CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q 037787 84 ------------------------------S-----------KSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGH 122 (163)
Q Consensus 84 ------------------------------~-----------~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 122 (163)
. ...........+|..+.+. .|.++....+.++....
T Consensus 81 ~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~- 158 (847)
T KOG0998|consen 81 RELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK- 158 (847)
T ss_pred cCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC-
Confidence 0 0000012344567777554 89999999998888766
Q ss_pred CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 123 ELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 123 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
+....+..++...|.+.+|.++..+|.-.|.-
T Consensus 159 -Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 159 -LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred -CChhhhccccccccccccCCCChhhhhhhhhH
Confidence 66677888999999999999999999877654
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.17 E-value=0.17 Score=39.02 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 92 QLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 92 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
..+..|..+|.++.|.++..+..++++..+...+++-....+...+.+..|.+...+|..++....
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 345679999999999999999999999998889999999999999999899999999999887643
No 123
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.10 E-value=0.023 Score=40.53 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMA 118 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 118 (163)
....+.+|+..|.|+|..||..|+...|.
T Consensus 369 rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 369 RKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred HHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 44555555555555555555555555554
No 124
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.07 E-value=0.64 Score=26.98 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------CCC----CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 91 EQLRQLFRMFDRDGNGFITAAELAHSMAKL-------GHE----LTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 91 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
+.++.+|..+ .|.+|.++...|..+|... |+. -.+..++.+|... .....|+.++|+++|...+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 4577788888 6888889988888887642 211 2677788888876 2456799999999998764
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.50 E-value=0.074 Score=29.17 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC-------CCceeHHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDG-------DGRISFQEFAQA 152 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~eF~~~ 152 (163)
+.+.+...|+.+ .++.++||.++|++.|. ++.++.+...+.+-. .|.++|..|++.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 456788999999 78889999999999954 344566665553221 367888888753
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.21 E-value=0.25 Score=38.66 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-C--C-----------cccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCcceeh
Q 037787 6 PMNLDDDQIAELREIFRSFDRNN-D--G-----------SLTQLELGSLLRSLG-LKPSPDQLETLIQKADTNSNGLVEF 70 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~-~--g-----------~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~ 70 (163)
-..|+..++..+..+|..--..+ - | .++...|..+++.+. +..+.--++++|+.+|.+.+|.+++
T Consensus 495 ~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf 574 (671)
T KOG4347|consen 495 TTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTF 574 (671)
T ss_pred cCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEH
Confidence 45588888888888886531111 1 1 133444444444322 1233445789999999999999999
Q ss_pred HHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHH
Q 037787 71 SEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAEL 113 (163)
Q Consensus 71 ~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 113 (163)
.+++..+....... .-+.+..+|+.+|++++ .+..++.
T Consensus 575 ~~lv~gL~~l~~~~----~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 575 KDLVSGLSILKAGD----ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhhh----HHHHHHHHHhhccCCcc-ccccccc
Confidence 99999998654211 34568889999999999 8888887
No 127
>PLN02952 phosphoinositide phospholipase C
Probab=92.77 E-value=2.4 Score=33.58 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=59.5
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhh----c
Q 037787 28 NDGSLTQLELGSLLRSLGL--KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMF----D 101 (163)
Q Consensus 28 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~----D 101 (163)
+.|.+++.+|..+.+.+.. .....++..+|..+..+ .+.++.++|..++...... ...+.+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e--~~~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDE--LDCTLAEAQRIVEEVINRRH 89 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCC--cCCCHHHHHHHHHHHHhhcc
Confidence 4689999999888777643 23678999999999654 4689999999999865422 122344444443322 1
Q ss_pred ---CCCCCcccHHHHHHHHH
Q 037787 102 ---RDGNGFITAAELAHSMA 118 (163)
Q Consensus 102 ---~~~~g~i~~~e~~~~l~ 118 (163)
..+.+.++.+.|..+|.
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccccCcCHHHHHHHHc
Confidence 11234588889888885
No 128
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.00 E-value=1.5 Score=28.71 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSLLRS 43 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 43 (163)
+++.++|.++++.+.+.+|..|+..+++.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 46677788887777777777777777764
No 129
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=91.58 E-value=2.1 Score=35.06 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCCHHHHHH-HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHHhCCCCCcceehHHHHHHHhHHHhcCC
Q 037787 8 NLDDDQIAE-LREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQ-LETLIQKADTNSNGLVEFSEFVALVAPELLSSK 85 (163)
Q Consensus 8 ~l~~~~~~~-~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 85 (163)
..++.++.. +++.+...|......++..++..+|...++..+... +.+-+-.. .-..+.++|++|..+..+.+....
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccc
Confidence 355666654 455677777777777999999999988777665432 22223222 233567999999999887765332
Q ss_pred CCCcHHHHH-HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH---HHHHHHHhhCCC-----CCCceeHHHHHHHHHHH
Q 037787 86 SPYSEEQLR-QLFRMFDRDGNGFITAAELAHSMAKLGHELTAE---ELTGMIREADTD-----GDGRISFQEFAQAITSA 156 (163)
Q Consensus 86 ~~~~~~~~~-~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~---~~~~~~~~~d~~-----~~g~i~~~eF~~~l~~~ 156 (163)
.....+... .+...-+......++..+|+++|.......... .++.+...|-.| ..-.+.+.||+.+|=..
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhc
Confidence 111111000 011222333446899999999998753332222 345555555222 34578999999997553
No 130
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.35 E-value=1.9 Score=31.03 Aligned_cols=67 Identities=19% Similarity=0.417 Sum_probs=41.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHH-----------HHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 94 RQLFRMFDRDGNGFITAAELAHSMAKL-----GHELTAE-----------ELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 94 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~-----------~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
+.+|...|.++||.++..++..++..- ...-.++ .-+.+++.+|.|.+..|+.++|++.-.+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 345666677777777777777666431 1110111 134567778888888888888888766655
Q ss_pred hhc
Q 037787 158 FDN 160 (163)
Q Consensus 158 ~~~ 160 (163)
|.+
T Consensus 327 f~~ 329 (442)
T KOG3866|consen 327 FNP 329 (442)
T ss_pred cCC
Confidence 543
No 131
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.32 E-value=0.3 Score=35.10 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHH---HHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 92 QLRQLFRMFDRDGNGFITAAEL---AHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 92 ~~~~~f~~~D~~~~g~i~~~e~---~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
.+...|..+|.|.++.|...|+ +.++.... -...-...+++..|.|+|..|++.|+..-|-.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4566788888888888888775 45555433 33455677888888888888888888776543
No 132
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.67 E-value=1.7 Score=38.24 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhc
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKP----SPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS 83 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 83 (163)
.|++.+++.+.++|..+|++..|.|...++..+++.+..++ ..+. +.+...+....++.|++.+-+.++......
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~l~ 1488 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRVLG 1488 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHhhc
Confidence 79999999999999999999999999999999998764332 2221 334444555678899999999998765443
No 133
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=89.14 E-value=1.2 Score=33.30 Aligned_cols=57 Identities=26% Similarity=0.356 Sum_probs=34.9
Q ss_pred CCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 63 NSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 63 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
.++...+-.|||................+.++.+-+.+|.|.+|.|+.+|=..+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 344456666666665544433333344566677777777777777777777666664
No 134
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=88.94 E-value=0.45 Score=28.81 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 48 PSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 48 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
++++.++.+|..+-.|..|.|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 68899999999999999999999999998874
No 135
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=88.69 E-value=3.1 Score=23.85 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 31 SLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 31 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
.+|.+||..+.+..+.+.+.+..+.+...+..+.-.-.+-++=..++.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 588999999999999999999999999999766655555555444444
No 136
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.41 E-value=0.57 Score=33.50 Aligned_cols=60 Identities=33% Similarity=0.541 Sum_probs=42.9
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHH-hC--CCCCH--HHH-----------HHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 20 IFRSFDRNNDGSLTQLELGSLLRS-LG--LKPSP--DQL-----------ETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 20 ~f~~~d~~~~g~i~~~e~~~~l~~-~~--~~~~~--~~~-----------~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.|...|.|++|+++..++..++.. +. +++.. .+. +.+....|.|.+..|+.++|+..-..
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 567778899999999999988764 21 22221 111 23456779999999999999987654
No 137
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=87.91 E-value=2.4 Score=34.91 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=51.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 91 EQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTA-----EELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 91 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
..++.+|.-++....|.++.+++...+...|...-. +++..+....|++..|.+++.+|...|.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 457788999999999999999999999999987553 233444444566667899999999998774
No 138
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=87.42 E-value=3.3 Score=22.68 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 108 ITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 108 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
++.+++..++...|..++..++..+++.-+..+--..+-..+..+|..-.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GLi 63 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGLI 63 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHHH
Confidence 55667888888888889999999988876554444556566666665543
No 139
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=87.03 E-value=13 Score=31.10 Aligned_cols=84 Identities=12% Similarity=0.238 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcC------CCCCcHHHHHHHHHhhcCCC--
Q 037787 33 TQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSS------KSPYSEEQLRQLFRMFDRDG-- 104 (163)
Q Consensus 33 ~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~------~~~~~~~~~~~~f~~~D~~~-- 104 (163)
+.+.|..++..+ -...+++.||..+..++..+++.+++..++....... -.+.....+..+...+.++.
T Consensus 206 ~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~ 282 (1189)
T KOG1265|consen 206 TLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDN 282 (1189)
T ss_pred cHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhh
Confidence 334455555543 2335799999999888878999999999998643221 12345677888899997775
Q ss_pred --CCcccHHHHHHHHHH
Q 037787 105 --NGFITAAELAHSMAK 119 (163)
Q Consensus 105 --~g~i~~~e~~~~l~~ 119 (163)
.|.|+.+-|...+..
T Consensus 283 a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 283 AEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhccccchhhhHHHhhC
Confidence 689999999888765
No 140
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=86.34 E-value=1 Score=24.81 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhhh
Q 037787 107 FITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSAAFD 159 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 159 (163)
.++...+-.++... ++......+...|+.=..++|+.++|+..++....|
T Consensus 8 ~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 8 WMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred cccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 34444444444432 555666666666655566778888888777765543
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=86.22 E-value=6.9 Score=30.91 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CC-CCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG-HE-LTAEELTGMIREADTD----GDGRISFQEFAQAITSA 156 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~-~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~ 156 (163)
....+..+|..+-. ++.|+.++|..+|.... .. .+.+.+..++..+... ..|.++++.|..+|...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 45567777777643 24677777777776642 22 3455567777766433 23568888888888664
No 142
>PLN02222 phosphoinositide phospholipase C 2
Probab=86.04 E-value=5.4 Score=31.56 Aligned_cols=65 Identities=15% Similarity=0.346 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CC-CCHHHHHHHHHhhCC-CCCCceeHHHHHHHHHHH
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKLG-HE-LTAEELTGMIREADT-DGDGRISFQEFAQAITSA 156 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~-~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~l~~~ 156 (163)
...+..+|..+.. ++.++.++|..+|.... .. .+.+.+..++..+.. ...+.++++.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 4467788888753 46888888888887743 22 466677777776532 234568888888888764
No 143
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=85.96 E-value=4.8 Score=23.10 Aligned_cols=42 Identities=19% Similarity=0.083 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHH
Q 037787 107 FITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQE 148 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 148 (163)
.||.+||..+.+.++.++++..++.++..+-.+.-.-.+-++
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~ 55 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQE 55 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 467777777777777777777777777766544433333333
No 144
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=85.90 E-value=2 Score=37.42 Aligned_cols=59 Identities=14% Similarity=0.410 Sum_probs=47.9
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 20 IFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 20 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.|..+|+++.|.|+..+|..++..- ...+..++.-+++-...+.+..++|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 4667899999999999999887642 2356668888888888888999999999987753
No 145
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=84.75 E-value=1.2 Score=27.11 Aligned_cols=33 Identities=30% Similarity=0.557 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 124 LTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 124 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
++++.++.++..+-.|..|.|.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 678899999999999999999999999988754
No 146
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.75 E-value=6.4 Score=31.27 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=41.3
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-C--CCCHHHHHHHHHhhCC-------CCCCceeHHHHHHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG-H--ELTAEELTGMIREADT-------DGDGRISFQEFAQAITSA 156 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~l~~~ 156 (163)
....+..+|..+..++ +.++.++|..+|.... . ..+.+++..++..+-. -+.+.++++.|..+|...
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 3456777777774333 6788888887777643 2 1355556666654311 123458888888888764
No 147
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.61 E-value=7.9 Score=24.48 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=19.3
Q ss_pred CCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhC
Q 037787 105 NGFITAAELAHSMAK-LGHELTAEELTGMIREAD 137 (163)
Q Consensus 105 ~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d 137 (163)
.+.|+.+.|+.+|+. +...++++-..++|..|-
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 346777888888777 344566666777777663
No 148
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=84.32 E-value=4.6 Score=23.76 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCC
Q 037787 28 NDGSLTQLELGSLLRSLG--LKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGN 105 (163)
Q Consensus 28 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 105 (163)
.||.++..|...+-..+. ...+..+...+...+........++.+|...+.... ........+..++..- --|
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~l~~L~~vA--~AD 86 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF---DYEERLELVEALWEVA--YAD 86 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHH--Hhc
Confidence 377888888666544321 245667777777777665556678888888876432 1111122334444444 245
Q ss_pred CcccHHHHHHH
Q 037787 106 GFITAAELAHS 116 (163)
Q Consensus 106 g~i~~~e~~~~ 116 (163)
|.++..|-.-+
T Consensus 87 G~~~~~E~~~l 97 (104)
T cd07313 87 GELDEYEEHLI 97 (104)
T ss_pred CCCCHHHHHHH
Confidence 66666665444
No 149
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.29 E-value=8.2 Score=24.41 Aligned_cols=69 Identities=19% Similarity=0.311 Sum_probs=34.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHh-------CCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCC
Q 037787 31 SLTQLELGSLLRSLGLKPSPDQLETLIQKA-------DTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRD 103 (163)
Q Consensus 31 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~-------d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~ 103 (163)
.+|..||.++-.-+.. +...++.++..+ ..+..+.|+|+.|..+|...... ....+-...+|..|-..
T Consensus 7 ~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~---d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 7 SLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV---DLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT----S--HHHHHHHHHHS---
T ss_pred ccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhCc
Confidence 4555555554332211 223455555555 23345689999999999865522 24566778888888554
Q ss_pred C
Q 037787 104 G 104 (163)
Q Consensus 104 ~ 104 (163)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 3
No 150
>PLN02222 phosphoinositide phospholipase C 2
Probab=83.15 E-value=7.6 Score=30.77 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC--CCHHHHHHHHHHhCC-CCCcceehHHHHHHHhH
Q 037787 16 ELREIFRSFDRNNDGSLTQLELGSLLRSLGLK--PSPDQLETLIQKADT-NSNGLVEFSEFVALVAP 79 (163)
Q Consensus 16 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~l~~ 79 (163)
.+..+|..+.. ++.++.++|..+|...... .+.+.+..++..+.. ...+.++++.|..+|..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45666666643 4699999999999876543 467778888887632 23567999999999974
No 151
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=82.63 E-value=6 Score=21.64 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 32 LTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 32 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
++..++..++...+..++..++..+++.-+..+.-..+-..+..++.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 34567777777778888888888888776554443344444444443
No 152
>PLN02228 Phosphoinositide phospholipase C
Probab=82.19 E-value=11 Score=29.87 Aligned_cols=58 Identities=17% Similarity=0.402 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCC----cceehHHHHHHH
Q 037787 18 REIFRSFDRNNDGSLTQLELGSLLRSLGL--KPSPDQLETLIQKADTNSN----GLVEFSEFVALV 77 (163)
Q Consensus 18 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~----g~i~~~ef~~~l 77 (163)
..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+..... |.++.+.|..++
T Consensus 27 ~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 27 KRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred HHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 344444432 246777777777765432 2344456666666643322 235666655554
No 153
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=81.54 E-value=5.5 Score=20.44 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQK 59 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 59 (163)
++...+++.++..+...|.. +...+..+...+...+| ++...|..+|..
T Consensus 2 r~r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 2 RKRTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSSSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHHH
Confidence 56788999999999999996 55777888888877775 555677777753
No 154
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.49 E-value=1.7 Score=32.00 Aligned_cols=63 Identities=27% Similarity=0.408 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH-HHHHHHHhhCCCCCCceeHHHHHHH
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAE-ELTGMIREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (163)
.+.+++.|+.+|+.+.|.|+.+-++.++.......++. .+..+=..+|+..-|.|-..+|...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 46799999999999999999999999999887444443 3444444556666666666665543
No 155
>PLN02230 phosphoinositide phospholipase C 4
Probab=77.88 E-value=18 Score=28.88 Aligned_cols=64 Identities=16% Similarity=0.343 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC-------CCcceehHHHHHHHhH
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSLLRSLGL---KPSPDQLETLIQKADTN-------SNGLVEFSEFVALVAP 79 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~-------~~g~i~~~ef~~~l~~ 79 (163)
..+..+|..+..+ .+.++.++|..+|..... ..+.+++..++..+-.. ..+.++++.|..+|..
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4567778887433 379999999999988653 23566667777544211 2346999999998864
No 156
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=77.69 E-value=14 Score=22.94 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 037787 92 QLRQLFRMFDRDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 92 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 120 (163)
.+..+...+|++++|.|+.-.++..+..+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 35678899999999999999999887653
No 157
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=77.66 E-value=7.7 Score=19.84 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
+....+++.++..+...|.. +...+..+...+...+| ++...|..+|..-
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 35667899999999999988 45778888888888776 5566787777543
No 158
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.51 E-value=2.2 Score=31.49 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH-HHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 14 IAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPD-QLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
-.+++++|+.+|+.++|+|+..-+...+...+...++. .+..+-..++...-|-|-.++|...+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 46789999999999999999999999999888655544 455555666666677777777666554
No 159
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=76.85 E-value=6.4 Score=20.82 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehH
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFS 71 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ 71 (163)
+|++..-..++.+|.... ..+.++..++...|. .++.-+..++.++.. .|.|.++
T Consensus 1 ~Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~--~GlV~~~ 55 (60)
T PF01325_consen 1 MLTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE--KGLVEYE 55 (60)
T ss_dssp TCSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH--CCCEEec
Confidence 366777788888888875 677899999987665 555567777777743 4555554
No 160
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=76.68 E-value=3.5 Score=16.88 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=7.2
Q ss_pred cCCCCCcccHHHHH
Q 037787 101 DRDGNGFITAAELA 114 (163)
Q Consensus 101 D~~~~g~i~~~e~~ 114 (163)
|.++||.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34556666555544
No 161
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=74.78 E-value=8.4 Score=24.69 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=11.3
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHh
Q 037787 97 FRMFDRDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 97 f~~~D~~~~g~i~~~e~~~~l~~~ 120 (163)
|..+-...-+.++.++|+.+|..+
T Consensus 63 fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 63 FSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred eeeccccccccccHHHHHHHHHHH
Confidence 333333344455555555555443
No 162
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=74.27 E-value=11 Score=20.09 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=24.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 30 GSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 30 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
-.+|.+|+...+..++-.++.+++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578888888888888888888887777666
No 163
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=74.20 E-value=29 Score=24.68 Aligned_cols=99 Identities=8% Similarity=0.046 Sum_probs=55.1
Q ss_pred CCCCcccHHHHHHHHHHh--CCCCCHHH---HHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHH----HHHH
Q 037787 27 NNDGSLTQLELGSLLRSL--GLKPSPDQ---LETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQL----RQLF 97 (163)
Q Consensus 27 ~~~g~i~~~e~~~~l~~~--~~~~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~----~~~f 97 (163)
..||.|+..|+. +.+.+ ...++.++ +..+|+.- .....++.+|+..+..... ...+.+ ..+|
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~-----~r~~l~~~lL~~l~ 137 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCG-----GRFDLLRMFLEIQI 137 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhc-----ccHHHHHHHHHHHH
Confidence 458999999987 33332 12344555 55555544 3344788999988876441 112222 3334
Q ss_pred HhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q 037787 98 RMFDRDGNGFITAAELAHSMAKL-GHELTAEELTGMIREA 136 (163)
Q Consensus 98 ~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 136 (163)
..-= -||.++..|-.-+..-. ...++..++..+...+
T Consensus 138 ~vA~--ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 138 QAAF--ADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred HHHH--hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4442 45778877754443332 1236777777666553
No 164
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.06 E-value=15 Score=21.38 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C----CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSLLRSL-------G----LKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
++++-+|+.+ .+++|.++...|..+|+.+ | +.....-++.-|+.. .....|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4667788888 7889999999999988742 1 111344455555554 23455788888887763
No 165
>PLN02223 phosphoinositide phospholipase C
Probab=73.28 E-value=27 Score=27.51 Aligned_cols=68 Identities=7% Similarity=-0.003 Sum_probs=46.0
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHh-CC-CCCHHHHHHHHHhhCCC--------CCCceeHHHHHHHHHH
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSM---AKL-GH-ELTAEELTGMIREADTD--------GDGRISFQEFAQAITS 155 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~-~~-~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~l~~ 155 (163)
..+.++.+|..+ ..+.|.++.+.+.+++ ... |. ..+.++++.++..+-.. ..+.++++.|..+|..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 456778888888 3677888888888887 432 22 25666666666655221 2256999999999977
Q ss_pred Hh
Q 037787 156 AA 157 (163)
Q Consensus 156 ~~ 157 (163)
..
T Consensus 93 ~~ 94 (537)
T PLN02223 93 TE 94 (537)
T ss_pred cc
Confidence 53
No 166
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=72.83 E-value=9.8 Score=18.74 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcC--CCCCcccHHHHHHHHHH
Q 037787 91 EQLRQLFRMFDR--DGNGFITAAELAHSMAK 119 (163)
Q Consensus 91 ~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~ 119 (163)
..+..+|+.+.. .....++..||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 346677777752 34678999999998876
No 167
>PLN02223 phosphoinositide phospholipase C
Probab=71.64 E-value=26 Score=27.65 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHHhCCCC--------CcceehHHHHHHHhH
Q 037787 16 ELREIFRSFDRNNDGSLTQLELGSLL---RSLG--LKPSPDQLETLIQKADTNS--------NGLVEFSEFVALVAP 79 (163)
Q Consensus 16 ~~~~~f~~~d~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~l~~~~d~~~--------~g~i~~~ef~~~l~~ 79 (163)
.++.+|..+ ..+.|.++.+.+.+++ .... ...+.++.+.++..+-... .+.++.+.|..+|..
T Consensus 17 ~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 17 LILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 345667776 3667899999999988 4332 3466777777776653222 256999999999975
No 168
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=71.12 E-value=15 Score=20.21 Aligned_cols=49 Identities=10% Similarity=0.246 Sum_probs=27.7
Q ss_pred CcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 037787 65 NGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 65 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 120 (163)
+-.++|......+.... .......+...++.=+.+.|+.++|.+.++..
T Consensus 6 sp~~~F~~L~~~l~~~l-------~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHL-------PPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 44566666666665544 23334444444444456677888877777763
No 169
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=70.15 E-value=9.8 Score=22.32 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=22.7
Q ss_pred CcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 65 NGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 65 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
||.++-.|--.+-...... ...+......+...+........+..++...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~--~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAER--FGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5666666554444332221 1112333344444443333344455555555443
No 170
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=68.48 E-value=16 Score=19.32 Aligned_cols=43 Identities=9% Similarity=0.228 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLK 47 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~ 47 (163)
+.++.||+++...+...|...-- .-...+..+...+...+|++
T Consensus 3 R~RT~Ft~~Q~~~Le~~fe~~~y-~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 3 RRRTKFTAEQKEKMRDFAEKLGW-KLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CCCCCCHHHHHHHHHHhCCC
Confidence 56888999999999998887411 11126666777777766643
No 171
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=68.36 E-value=20 Score=20.57 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=28.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037787 106 GFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAI 153 (163)
Q Consensus 106 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (163)
-.|+..+|+..+.....-.+..+..++=..+|..+++.|+.=||--+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 457777777777765433444555666666777777777766665443
No 172
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=66.21 E-value=3 Score=27.97 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=28.2
Q ss_pred CCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 037787 64 SNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAH 115 (163)
Q Consensus 64 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 115 (163)
.+|+++-.|...+-.+.. ..+..+.++|...|.++||+|+..|.-.
T Consensus 201 ~d~~~sh~el~pl~ap~i------pme~c~~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLI------PMEHCTTRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred ccccccccccccccCCcc------cHHhhchhhhhcccCCCCCceeHHHhhc
Confidence 356666665554433221 1345667788888888888888766543
No 173
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.08 E-value=19 Score=19.44 Aligned_cols=32 Identities=16% Similarity=0.439 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 29 DGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 29 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
+.-|+.+.++.....+|..|+...+..+.+..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55689999999999999999999999988765
No 174
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=65.07 E-value=28 Score=21.00 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 95 QLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 95 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
..|..+...++...+..+++.+|...|....++.++.++..+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 3456666777778899999999999999999999999998883
No 175
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.93 E-value=32 Score=21.90 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=39.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHH---HHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 95 QLFRMFDRDGNGFITAAELAHS---MAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 95 ~~f~~~D~~~~g~i~~~e~~~~---l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
.+|+... -||.++..|...+ ++. ...++..++..++.....-+...+++..|..-|+.
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5677764 4566777776544 443 23488888888888776666667888888877763
No 176
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=63.19 E-value=6.2 Score=24.56 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=42.4
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCC
Q 037787 28 NDGSLTQLELGSLLRSL--GLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGN 105 (163)
Q Consensus 28 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 105 (163)
.||.++..|...+...+ ....+..+...+...+........++.+++..+..... .......+..++.....|
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~r~~ll~~l~~ia~AD-- 110 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLS---PEEREDLLRMLIAIAYAD-- 110 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS-----HHHHHHHHHHHHHHCTCT--
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhcC--
Confidence 48889888887776654 22334555666666665444446777888777653221 001123344555555444
Q ss_pred CcccHHHH
Q 037787 106 GFITAAEL 113 (163)
Q Consensus 106 g~i~~~e~ 113 (163)
|.++..|-
T Consensus 111 G~~~~~E~ 118 (140)
T PF05099_consen 111 GEISPEEQ 118 (140)
T ss_dssp TC-SCCHH
T ss_pred CCCCHHHH
Confidence 55554443
No 177
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.02 E-value=48 Score=23.49 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=41.3
Q ss_pred HHHHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 90 EEQLRQLFRMF-DRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 90 ~~~~~~~f~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
...+...|..+ |+..+..|..+-+.+++..+|....+-.+--+...++...-+.++.++|+.-+...
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 33444555444 66666788888888888888854333222222333445556788888888866654
No 178
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=62.94 E-value=47 Score=22.80 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCCCCcccHHHHHHHHHHhC--C-CCCHHHHHHHHHhhCCCC
Q 037787 102 RDGNGFITAAELAHSMAKLG--H-ELTAEELTGMIREADTDG 140 (163)
Q Consensus 102 ~~~~g~i~~~e~~~~l~~~~--~-~~~~~~~~~~~~~~d~~~ 140 (163)
..+-|.|+..|+...+.... . .++++++...+..+..-+
T Consensus 108 ~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg 149 (223)
T PF04157_consen 108 SKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLG 149 (223)
T ss_dssp CTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCT
T ss_pred hcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcC
Confidence 33445666666666666532 1 156666666666665444
No 179
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.81 E-value=29 Score=28.10 Aligned_cols=64 Identities=23% Similarity=0.447 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037787 90 EEQLRQLFRMFDRDGNGFITAAELAHSMAKL---G-----HELTAEELTGMIREADTDGDGRISFQEFAQAIT 154 (163)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (163)
+..++-+|.+.|. .+|.++.+++..++... + ...+.+....++...|.+..|.+...++...+.
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 3445555555554 55555555555554431 0 112233344444445555555544444444433
No 180
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=62.44 E-value=33 Score=20.89 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=34.1
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 96 LFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 96 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
.|...-..++..+|.++++.+|+..|..+.+..+..+++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344444566777999999999999999999988999888884
No 181
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.24 E-value=15 Score=27.65 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 037787 93 LRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQ 151 (163)
Q Consensus 93 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (163)
..++|..+. .-+|+||...-+.-+.... +....+-.+|+..|.+++|.++-+||.-
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~sk--lpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVKSK--LPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHhcc--CchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 456777774 4578888887777766544 6778899999999999999999999863
No 182
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=61.31 E-value=12 Score=21.23 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 104 GNGFITAAELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
..|+||.+++..+|.... ++++.++.++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 345566666666655333 45555555555553
No 183
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=61.18 E-value=34 Score=20.66 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 18 REIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 18 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
...|-.+..-++...+..++..+|...|.....+.+..+++.+ .|+ +.+|.+..=+
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~G~ 59 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAAGR 59 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHHhH
Confidence 3455566666777888999999999999999999999999888 344 6777665543
No 184
>PRK00523 hypothetical protein; Provisional
Probab=61.10 E-value=27 Score=19.37 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 29 DGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 29 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
+.-|+.+-++..+..+|..|+...++++.+..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55788899999999999999999999988876
No 185
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=59.98 E-value=17 Score=19.41 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 037787 107 FITAAELAHSMAKLGHELTAEELTGM 132 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 132 (163)
.|+.++|..+|+.....++.++++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888887777887777653
No 186
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=59.86 E-value=44 Score=21.56 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=51.3
Q ss_pred HHHHHHhh-cCCCCC-cccHHHHHHHHHHhCC----CCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcC-CCCCc
Q 037787 17 LREIFRSF-DRNNDG-SLTQLELGSLLRSLGL----KPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSS-KSPYS 89 (163)
Q Consensus 17 ~~~~f~~~-d~~~~g-~i~~~e~~~~l~~~~~----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~-~~~~~ 89 (163)
-.+.|..+ |+..+| .|+-.++..++...++ .++.-++.-.|..+.-...+.++|++|...|......+ .....
T Consensus 17 ~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ 96 (180)
T KOG4070|consen 17 SFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSK 96 (180)
T ss_pred HHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCH
Confidence 34445555 333344 5788889999887643 45555666678777766778899999977775433211 12233
Q ss_pred HHHHHHHHHhh
Q 037787 90 EEQLRQLFRMF 100 (163)
Q Consensus 90 ~~~~~~~f~~~ 100 (163)
++.+..+++.+
T Consensus 97 ee~l~~I~~ll 107 (180)
T KOG4070|consen 97 EEALDAICQLL 107 (180)
T ss_pred HHHHHHHHHHH
Confidence 45555555555
No 187
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.74 E-value=28 Score=19.16 Aligned_cols=32 Identities=13% Similarity=0.396 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 29 DGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 29 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
+.-|+.+-++..+..+|..++...++++++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 55688888999999999999999999888776
No 188
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=56.92 E-value=78 Score=25.03 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 7 MNLDDDQIAELREIFRSFDRN-NDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.+|.++.+..+.+.|...... ++--|+.+.+..+-..+|..++.++.+.+-..+..-+.|.|+-++.+.-+..
T Consensus 81 ~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~ 154 (529)
T PRK06253 81 KQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISK 154 (529)
T ss_pred HhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHH
Confidence 357788888999999988754 5667999999988777999998888555544444445677777887766654
No 189
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=56.89 E-value=43 Score=21.16 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=38.2
Q ss_pred CCCcccHHHHHHHHHHhCC---------CCCHHHHHHHHHhhCCCCCC-ceeHHHHHHH
Q 037787 104 GNGFITAAELAHSMAKLGH---------ELTAEELTGMIREADTDGDG-RISFQEFAQA 152 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~~~~~---------~~~~~~~~~~~~~~d~~~~g-~i~~~eF~~~ 152 (163)
|+..||.+||.+++..... .+.++++..+.+.+...+.+ .++..|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6788999999999986421 15789999999999876665 4888887664
No 190
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=56.70 E-value=42 Score=20.30 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=38.8
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 037787 97 FRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 97 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (163)
|..+...++..+|.++++.+++..|..+.+..+..+++.+.. .++.+.+..
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 444445677789999999999999999988888888888742 355666554
No 191
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=54.40 E-value=30 Score=23.55 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037787 3 NKQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQ 58 (163)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 58 (163)
|++++.|+..++..+.+.|+. ..+++..|-.++-..+. ++.-.|.-+|+
T Consensus 145 RkPRtPFTtqQLlaLErkfre-----kqYLSiaEraefSsSL~--LTeTqVKIWFQ 193 (246)
T KOG0492|consen 145 RKPRTPFTTQQLLALERKFRE-----KQYLSIAERAEFSSSLE--LTETQVKIWFQ 193 (246)
T ss_pred CCCCCCCCHHHHHHHHHHHhH-----hhhhhHHHHHhhhhhhh--hhhhheehhhh
Confidence 467899999999999999986 45777777777666554 33334555553
No 192
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=53.95 E-value=47 Score=20.00 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---CCC-CCHHHHHHHH
Q 037787 58 QKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKL---GHE-LTAEELTGMI 133 (163)
Q Consensus 58 ~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~~~-~~~~~~~~~~ 133 (163)
+.+|...+.+|+.++...+...- .-|...|.....-||.+-+.+++... |.+ ++..-+..++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g--------------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlI 75 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREG--------------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQII 75 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCC--------------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 55778888889999888887521 23666776655668888887777653 333 6778888888
Q ss_pred HhhCCCCCC
Q 037787 134 READTDGDG 142 (163)
Q Consensus 134 ~~~d~~~~g 142 (163)
+.++..-.|
T Consensus 76 r~yg~~~q~ 84 (107)
T TIGR01848 76 RFYGGSMQS 84 (107)
T ss_pred HHhChhHHH
Confidence 888654433
No 193
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=53.73 E-value=92 Score=24.49 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 8 NLDDDQIAELREIFRSFDRN-NDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
+|.++.+..+.+.|...... ++--|+.+.+..+-. +|..+++++.+.+-..+..-+.|.|+-++...-+..
T Consensus 82 qfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~-~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~ 153 (533)
T TIGR00470 82 QFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIEN-LGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAK 153 (533)
T ss_pred hhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHH-hCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHH
Confidence 57788888899999988754 566799999988766 999888876655554444445677888887776654
No 194
>PRK01844 hypothetical protein; Provisional
Probab=53.43 E-value=38 Score=18.78 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 29 DGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 29 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
+.-|+.+-++..+...|..|+...+..+.+..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45688899999999999999999999988876
No 195
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=52.06 E-value=53 Score=23.99 Aligned_cols=50 Identities=28% Similarity=0.306 Sum_probs=38.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 037787 3 NKQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQK 59 (163)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 59 (163)
++.++.||.-++..+++.|..- -+|+..|=..+...+| +++..|..+|+.
T Consensus 173 RksRTaFT~~Ql~~LEkrF~~Q-----KYLS~~DR~~LA~~Lg--LTdaQVKtWfQN 222 (309)
T KOG0488|consen 173 RKSRTAFSDHQLFELEKRFEKQ-----KYLSVADRIELAASLG--LTDAQVKTWFQN 222 (309)
T ss_pred ccchhhhhHHHHHHHHHHHHHh-----hcccHHHHHHHHHHcC--CchhhHHHHHhh
Confidence 4668889999999999999873 2566666666666554 677788888865
No 196
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=50.76 E-value=55 Score=19.88 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=6.5
Q ss_pred CCCcccHHHHHHHHH
Q 037787 104 GNGFITAAELAHSMA 118 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~ 118 (163)
..|.|+......+++
T Consensus 82 r~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 82 REGKIPLSVPLTLLK 96 (117)
T ss_pred HcCCccHHHHHHHHH
Confidence 344444444444443
No 197
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=50.58 E-value=66 Score=20.70 Aligned_cols=54 Identities=19% Similarity=0.421 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 54 ETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 54 ~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
+.++..-+.+.++.|++..|...+.... ...+..-| ..+...+|.++++.++..
T Consensus 86 ehllg~~~~~~n~~i~~~~ff~~lQ~~l--------GdWIT~~~----Lkh~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 86 EHLLGGEDDSTNGLIDIGKFFDILQPKL--------GDWITKNF----LKHPNRMSKDQIKTLCEQ 139 (175)
T ss_pred HHHhcCCcCCcccceeHHHHHHHHHHHh--------hhHHHHHH----HhccchhhHHHHHHHHHH
Confidence 3333333344466788888888875432 11122222 234455777777777654
No 198
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=50.47 E-value=52 Score=19.54 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcC---CCCCcccHHHHHHHHHHh
Q 037787 49 SPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDR---DGNGFITAAELAHSMAKL 120 (163)
Q Consensus 49 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~---~~~g~i~~~e~~~~l~~~ 120 (163)
.-..|+.-|..+.. +|.+.-..|-.++... ...+-..++|..+-. -..+.|+.+|++.+...+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~-------dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMK-------DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT---------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCc-------ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 35567777877765 7888888888888632 245556666666632 124678888888777653
No 199
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=50.44 E-value=65 Score=20.58 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=43.1
Q ss_pred cceehHHHHHHHhHHHh----cCCCCCcH----HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH---
Q 037787 66 GLVEFSEFVALVAPELL----SSKSPYSE----EQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIR--- 134 (163)
Q Consensus 66 g~i~~~ef~~~l~~~~~----~~~~~~~~----~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--- 134 (163)
..|++++|...+..... ........ .....++..+ |...=+.+-++++|..++++++..++.
T Consensus 47 e~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g~ 119 (145)
T PF13623_consen 47 EKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQGT 119 (145)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcCC
Confidence 45888888777654330 11111111 1223333333 333345555666788788888777771
Q ss_pred -------hhCCCCCCceeHHHHHHH
Q 037787 135 -------EADTDGDGRISFQEFAQA 152 (163)
Q Consensus 135 -------~~d~~~~g~i~~~eF~~~ 152 (163)
.+-.+.+|.++...|.++
T Consensus 120 ~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 120 NPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred CchhhhccccCcccCCcCHHHHHhh
Confidence 111346788887777665
No 200
>PF13551 HTH_29: Winged helix-turn helix
Probab=50.33 E-value=50 Score=19.28 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHH--HHhCCCCCHHHHHHHHHH
Q 037787 9 LDDDQIAELREIFRSFDRNNDGSLTQLELGSLL--RSLGLKPSPDQLETLIQK 59 (163)
Q Consensus 9 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~~l~~~ 59 (163)
+++++...+.+.+..--.++.+..+...+...+ ...+..++..-+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 777777777777766443332457777777754 335666777667666654
No 201
>PHA02105 hypothetical protein
Probab=50.25 E-value=38 Score=17.80 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCC--cceehHHHHHHHh
Q 037787 31 SLTQLELGSLLRSL---GLKPSPDQLETLIQKADTNSN--GLVEFSEFVALVA 78 (163)
Q Consensus 31 ~i~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~--g~i~~~ef~~~l~ 78 (163)
.++++++..++... ..++..+.+..+-..+...+- -.++|+||-..+-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 36777887777543 335556666666666665543 4578999887763
No 202
>PRK13503 transcriptional activator RhaS; Provisional
Probab=49.98 E-value=87 Score=21.90 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=10.2
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHH
Q 037787 53 LETLIQKADTNSNGLVEFSEFVALV 77 (163)
Q Consensus 53 ~~~l~~~~d~~~~g~i~~~ef~~~l 77 (163)
+..+.+.+..+-...++.+++...+
T Consensus 173 i~~~~~~I~~~~~~~~tl~~lA~~~ 197 (278)
T PRK13503 173 LNQLLAWLEDHFAEEVNWEALADQF 197 (278)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3333333333333344444444443
No 203
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=49.88 E-value=56 Score=24.13 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 037787 105 NGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 105 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (163)
.|.||++|=...++......+++.++.+++.++ |+.+||...
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 466666666666666433344555666666553 444555544
No 204
>PRK10945 gene expression modulator; Provisional
Probab=48.49 E-value=47 Score=18.38 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=21.1
Q ss_pred ehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q 037787 69 EFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLG 121 (163)
Q Consensus 69 ~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 121 (163)
+-.+|+--++... +.+.++.+|...- ..++..|+..+..+..
T Consensus 7 tk~dyL~~fRrcs-------s~eTLEkvie~~~----~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 7 TKTDYLMRLRRCQ-------TIDTLERVIEKNK----YELSDDELAVFYSAAD 48 (72)
T ss_pred cHHHHHHHHHhcC-------cHHHHHHHHHHhh----ccCCHHHHHHHHHHHH
Confidence 4455555554332 4556666665442 2344456655555443
No 205
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=48.46 E-value=46 Score=22.24 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=18.7
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 102 RDGNGFITAAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 102 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
.+.+|.++.+++.+.+..-+..++.+++..+...-
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 56677777777777776655556677777766543
No 206
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=47.98 E-value=54 Score=18.92 Aligned_cols=76 Identities=22% Similarity=0.405 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHhCCC---CC-cceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 037787 48 PSPDQLETLIQKADTN---SN-GLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE 123 (163)
Q Consensus 48 ~~~~~~~~l~~~~d~~---~~-g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 123 (163)
.+++.+...+...... .. ..+++.+++..= ....+.....-..+...+ +-|+.+..+|..-|..+|
T Consensus 7 A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~~G-----L~g~~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~-- 76 (87)
T PF13331_consen 7 ASPEAIREALENARTEDEEPKESEITWEDLIELG-----LIGGPDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG-- 76 (87)
T ss_pred CCHHHHHHHHHHhCccccCCccCcCCHHHHHHCC-----CCCCccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC--
Confidence 4555666665555321 11 147777766652 122222333344455555 337778888888888777
Q ss_pred CCHHHHHHHH
Q 037787 124 LTAEELTGMI 133 (163)
Q Consensus 124 ~~~~~~~~~~ 133 (163)
+|.+++.+++
T Consensus 77 it~~e~~~al 86 (87)
T PF13331_consen 77 ITREEFEEAL 86 (87)
T ss_pred CCHHHHHHHh
Confidence 7777777654
No 207
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=47.96 E-value=80 Score=22.24 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
.||..|++.+++++..++.+ +|.++..++... +| .+...+.+.++.+
T Consensus 176 tLSySEleAv~~IL~~L~~~-egrlse~eLAer---lG--VSRs~ireAlrkL 222 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDGN-EGLLVASKIADR---VG--ITRSVIVNALRKL 222 (251)
T ss_pred hccHhHHHHHHHHHHHhccc-cccccHHHHHHH---HC--CCHHHHHHHHHHH
Confidence 47778888888888887442 577888777754 33 3334566666665
No 208
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=47.70 E-value=38 Score=18.27 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=28.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q 037787 104 GNGFITAAELAHSMAKLGHELTAEELTGMIREADTDG 140 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 140 (163)
.++.++..++...+...|..++++-+..-++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888888888888788888888888888876554
No 209
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=47.68 E-value=49 Score=22.13 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=24.2
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 037787 25 DRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADT 62 (163)
Q Consensus 25 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 62 (163)
..+.+|.++.+++...++.-+..++.+++.++...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35789999999999988876777888888888877654
No 210
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=46.69 E-value=66 Score=19.62 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=31.7
Q ss_pred hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 99 MFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 99 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
..-..++..+|.++++.+++..|..+....+..+++.+.
T Consensus 9 l~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 9 LAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 333456667999999999999998888888888888874
No 211
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=45.59 E-value=1.3e+02 Score=25.09 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhcCCCC-CcccHHHHHHHHH--------HhC----CCCCH-HHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 14 IAELREIFRSFDRNND-GSLTQLELGSLLR--------SLG----LKPSP-DQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~-g~i~~~e~~~~l~--------~~~----~~~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
+.-+..+|..++..++ ..+...+....|. ..| .+..- --+.-+++.||...+|.|..-+|.-.+..
T Consensus 419 ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~ 498 (966)
T KOG4286|consen 419 LSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIIS 498 (966)
T ss_pred HHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHH
Confidence 4456667777776543 3444444333221 111 11111 11456789999999999998888766654
Q ss_pred HHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH-------HH------hCCCCCHHHHHHHHHhhCCCCCCceeH
Q 037787 80 ELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSM-------AK------LGHELTAEELTGMIREADTDGDGRISF 146 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l-------~~------~~~~~~~~~~~~~~~~~d~~~~g~i~~ 146 (163)
... .. ..+.+..+|.....++...+ .-.|..+| .. +|-.--+.-++.+|.. .++.-.|++
T Consensus 499 lck---~~-leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~--v~~~pei~~ 571 (966)
T KOG4286|consen 499 LCK---AH-LEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQF--VNNKPEIEA 571 (966)
T ss_pred Hhc---ch-hHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHh--cCCCCcchH
Confidence 332 22 35677789998866655543 43444333 22 2322223447888873 344557999
Q ss_pred HHHHHHHHHHh
Q 037787 147 QEFAQAITSAA 157 (163)
Q Consensus 147 ~eF~~~l~~~~ 157 (163)
..|+.++...+
T Consensus 572 ~~f~dw~~~ep 582 (966)
T KOG4286|consen 572 ALFLDWMRLEP 582 (966)
T ss_pred HHHHHHhccCc
Confidence 99999887654
No 212
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=45.20 E-value=51 Score=24.42 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=45.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 94 RQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 94 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
..+.-.+|+.+.|.++..-.+-.+..+.-+--.+.+..+|... .+..|-+.+..|..++..
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 4456677999999999999999888865544456688888887 566676666666666554
No 213
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.05 E-value=53 Score=24.92 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=37.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHH
Q 037787 17 LREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVA 75 (163)
Q Consensus 17 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 75 (163)
..++|..+.+ -+|.+|-..-...+... .++...+-.+|...|.+++|.++-+||.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4556766633 46777766665554433 34455677888888888888888888753
No 214
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=44.49 E-value=80 Score=19.93 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=46.4
Q ss_pred HHHHHHHH--hCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q 037787 52 QLETLIQK--ADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEEL 129 (163)
Q Consensus 52 ~~~~l~~~--~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 129 (163)
++..+|.. -........+.++|+.-................+..+|..+.. .|+..++.++...+. .++
T Consensus 58 ~ir~~~~~~p~~~~~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r----~Is~gei~~v~s~Lp-----~~~ 128 (135)
T COG5502 58 EIRDILVDGPDLGPPKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKR----HISPGEIDKVRSRLP-----KEI 128 (135)
T ss_pred HHHHHHhcCCcCCCCCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHCc-----HHH
Confidence 34555544 2344567788999988887665544444444445588888864 388888888887642 345
Q ss_pred HHHH
Q 037787 130 TGMI 133 (163)
Q Consensus 130 ~~~~ 133 (163)
.++|
T Consensus 129 ~elw 132 (135)
T COG5502 129 RELW 132 (135)
T ss_pred HHhc
Confidence 5554
No 215
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=44.34 E-value=1.2e+02 Score=22.04 Aligned_cols=63 Identities=19% Similarity=0.373 Sum_probs=45.3
Q ss_pred HHHHHHhhcCC---------CCCcccHHHHHHHHHHh---------------CCCCCHHHHHHHHHhhCCC-----CCCc
Q 037787 93 LRQLFRMFDRD---------GNGFITAAELAHSMAKL---------------GHELTAEELTGMIREADTD-----GDGR 143 (163)
Q Consensus 93 ~~~~f~~~D~~---------~~g~i~~~e~~~~l~~~---------------~~~~~~~~~~~~~~~~d~~-----~~g~ 143 (163)
+.++|..+++. ++-.|+.++|.+++-.+ ...+++..+..+.+.|-.| ..+.
T Consensus 194 ~leLf~~yn~~khl~lm~~L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~ 273 (323)
T PF12987_consen 194 VLELFQNYNPAKHLHLMQTLGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGE 273 (323)
T ss_pred HHHHHHhcCHHHHHHHHHHhccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCc
Confidence 34455555543 46789999999988543 1126788899999888433 3678
Q ss_pred eeHHHHHHHHHH
Q 037787 144 ISFQEFAQAITS 155 (163)
Q Consensus 144 i~~~eF~~~l~~ 155 (163)
|+.+.|.++++.
T Consensus 274 Is~W~~ynLlT~ 285 (323)
T PF12987_consen 274 ISMWNFYNLLTG 285 (323)
T ss_pred ccHHHHHHHHhc
Confidence 999999999887
No 216
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=44.01 E-value=73 Score=21.20 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehH
Q 037787 26 RNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFS 71 (163)
Q Consensus 26 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ 71 (163)
.+.+|.++.+++...++.-+...+.+++.++...-+ .++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 478999999999998876555678888877776554 3444443
No 217
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=43.99 E-value=95 Score=20.65 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCCCc--ceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 037787 53 LETLIQKADTNSNG--LVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE 123 (163)
Q Consensus 53 ~~~l~~~~d~~~~g--~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 123 (163)
+..+|.++-. ..| .++.+.|...+....... .+.-...+..+=..+-+...-.|+..||..++..+|..
T Consensus 21 vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~-~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~ 91 (181)
T PF11422_consen 21 VISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQP-SQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPE 91 (181)
T ss_dssp HHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-T-TS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSG
T ss_pred HHHHHHHHhc-CCCcceeeHHHHHHHHHHHhccc-cccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCc
Confidence 4445555533 344 788888888777554222 22234444445555556667889999999998888854
No 218
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=43.68 E-value=62 Score=20.56 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q 037787 107 FITAAELAHSMAKLGHELTAEELTGMIREADTD 139 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 139 (163)
..|.+++..+...+...+|++++..+++.++.-
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 346777777777666667888888888877653
No 219
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=43.65 E-value=67 Score=25.11 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcH
Q 037787 11 DDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSE 90 (163)
Q Consensus 11 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 90 (163)
...++..-.+|...-+.+...++..++..++..++.....++-.+.|..-+.... .+.|..++....... .+.
T Consensus 481 ~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel------~D~ 553 (612)
T COG5069 481 WQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSEL------VDY 553 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhh------cCh
Confidence 3445555667777766666679999999999998887665544344433221111 255555555554322 244
Q ss_pred HHHHHHHHhhcC
Q 037787 91 EQLRQLFRMFDR 102 (163)
Q Consensus 91 ~~~~~~f~~~D~ 102 (163)
+.+...|..++.
T Consensus 554 d~v~~~~~~f~d 565 (612)
T COG5069 554 DLVTRGFTEFDD 565 (612)
T ss_pred hhhhhhHHHHHH
Confidence 556666666543
No 220
>PRK04387 hypothetical protein; Provisional
Probab=43.65 E-value=66 Score=18.74 Aligned_cols=64 Identities=11% Similarity=0.281 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCcceehH
Q 037787 7 MNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLG-LKPSPDQLETLIQKADTNSNGLVEFS 71 (163)
Q Consensus 7 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ 71 (163)
..-|.+++..+-..|......-...|..++|...-+.+. +.|+..+=.+|++.|. ..+|.-.|.
T Consensus 9 ~dWsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe-~~SGYS~Y~ 73 (90)
T PRK04387 9 LDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFE-KVSGYSIYR 73 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHcCCcHHH
Confidence 345778888888888887766666788898888777653 5677777788888884 345654444
No 221
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=42.98 E-value=12 Score=21.03 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHH
Q 037787 103 DGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQ 147 (163)
Q Consensus 103 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 147 (163)
+..|.=+.-+|-.++.-+|..+-+..++.+++.+ ..+.|.+.++
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSM-tR~tgF~E~~ 79 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSM-TRSTGFMEFE 79 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHh-hcccCceecC
Confidence 3455556668899999888777788888888888 4555655543
No 222
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=42.37 E-value=84 Score=22.36 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=6.2
Q ss_pred CCCcccHHHHH
Q 037787 104 GNGFITAAELA 114 (163)
Q Consensus 104 ~~g~i~~~e~~ 114 (163)
-||.|+..|..
T Consensus 68 ADG~Vse~Ei~ 78 (267)
T PRK09430 68 AKGRVTEADIR 78 (267)
T ss_pred cCCCcCHHHHH
Confidence 35556666654
No 223
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=40.49 E-value=69 Score=18.05 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-CCCceeHHHHHHHH
Q 037787 110 AAELAHSMAKLGHELTAEELTGMIREADTD-GDGRISFQEFAQAI 153 (163)
Q Consensus 110 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~eF~~~l 153 (163)
.+++...|. |.+.+.+.+.+.+..++.. --+.++.++|++++
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 556666664 5567788888888888543 34678888888764
No 224
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=40.42 E-value=83 Score=20.96 Aligned_cols=16 Identities=13% Similarity=0.443 Sum_probs=7.8
Q ss_pred CCCCcceehHHHHHHH
Q 037787 62 TNSNGLVEFSEFVALV 77 (163)
Q Consensus 62 ~~~~g~i~~~ef~~~l 77 (163)
.+.+|.+..++++..+
T Consensus 28 ld~~G~v~v~~Ll~~~ 43 (179)
T PRK00819 28 LDEEGWVDIDALIEAL 43 (179)
T ss_pred cCCCCCEEHHHHHHHH
Confidence 3445555555544444
No 225
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=40.29 E-value=83 Score=18.90 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037787 108 ITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAIT 154 (163)
Q Consensus 108 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (163)
+|.++++.+|+..|..+.+..+..+++.+.. .+.++.+.-..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHHH
Confidence 9999999999999999999999999988732 35566665443
No 226
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=40.05 E-value=57 Score=17.95 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=6.4
Q ss_pred cHHHHHHHHHhh
Q 037787 89 SEEQLRQLFRMF 100 (163)
Q Consensus 89 ~~~~~~~~f~~~ 100 (163)
+.+.++++|...
T Consensus 15 s~eTLEkv~e~~ 26 (71)
T PRK10391 15 SLESLEKLFDHL 26 (71)
T ss_pred cHHHHHHHHHHh
Confidence 345555555554
No 227
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=39.90 E-value=41 Score=15.33 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHHhCCCC
Q 037787 107 FITAAELAHSMAKLGHEL 124 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~ 124 (163)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 356667777777766553
No 228
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=39.64 E-value=51 Score=16.32 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 037787 109 TAAELAHSMAKLGHELTAEEL 129 (163)
Q Consensus 109 ~~~e~~~~l~~~~~~~~~~~~ 129 (163)
+.+++..+-+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667788888888888887765
No 229
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=39.19 E-value=1.5e+02 Score=22.38 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=36.1
Q ss_pred CcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 65 NGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 65 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
+..++++.+........ .-...+..+.++...+.+++|.....++.+.+..
T Consensus 72 ~~~~~l~k~~~~~~~~~----~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~ 122 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYE----KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVV 122 (427)
T ss_pred CccchHHHHhhHHhhhc----cCcccHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 44577777765544222 1123556778889999999999999999888865
No 230
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=39.05 E-value=1.1e+02 Score=20.52 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
+.++-|+..++.++...|.. +++|...|=..+.+.+++. +-.|+-+|+.-
T Consensus 104 r~RT~ft~~Ql~~LE~~F~~-----~~Yvvg~eR~~LA~~L~Ls--etQVkvWFQNR 153 (197)
T KOG0843|consen 104 RIRTAFTPEQLLKLEHAFEG-----NQYVVGAERKQLAQSLSLS--ETQVKVWFQNR 153 (197)
T ss_pred ccccccCHHHHHHHHHHHhc-----CCeeechHHHHHHHHcCCC--hhHhhhhhhhh
Confidence 35778999999999998865 6677777777777766644 44666666443
No 231
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=38.96 E-value=82 Score=18.48 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHH
Q 037787 109 TAAELAHSMAKLGHELTAEELTGMI 133 (163)
Q Consensus 109 ~~~e~~~~l~~~~~~~~~~~~~~~~ 133 (163)
+...+.+.|..++.....+.++..+
T Consensus 66 t~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 66 SVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHH
Confidence 4667777777777766666665543
No 232
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=38.72 E-value=57 Score=16.57 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q 037787 105 NGFITAAELAHSMAKLGHELTAEELTGMIREADTD 139 (163)
Q Consensus 105 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 139 (163)
.|.|+..+|+..+. ++..-+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 67788888888864 6667677777777654
No 233
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.52 E-value=63 Score=19.75 Aligned_cols=29 Identities=34% Similarity=0.352 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 109 TAAELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 109 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
+..|++.++...+..+++++++.++...+
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 56688888888888788888888776553
No 234
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.32 E-value=1.8e+02 Score=22.28 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=14.5
Q ss_pred CCCCCcccHHHHHHHHHHh
Q 037787 102 RDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 102 ~~~~g~i~~~e~~~~l~~~ 120 (163)
.++++.++..|++++++..
T Consensus 370 ~~~~~~ls~~ei~~lfk~a 388 (467)
T KOG2623|consen 370 KAGLSGLSLSEILQLFKDA 388 (467)
T ss_pred ccccccCCHHHHHHHHhcC
Confidence 4577888888888888853
No 235
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=38.30 E-value=80 Score=18.19 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 108 ITAAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 108 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
|+.++++.+-+-....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 35566666666666666666655544333
No 236
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=37.97 E-value=55 Score=16.17 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 037787 110 AAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 110 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (163)
.+|....|..+| .++.++..++..... ...++.++.++.
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 356777888888 678888888888854 233456665543
No 237
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=37.85 E-value=54 Score=17.54 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=12.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 037787 95 QLFRMFDRDGNGFITAAELAHSMAKLGHE 123 (163)
Q Consensus 95 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 123 (163)
.+++.++.+...-|+.++...-.+.+|.+
T Consensus 8 ~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 8 EVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 34444443333334545555555544433
No 238
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=37.83 E-value=51 Score=18.27 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=7.7
Q ss_pred CcceehHHHHHHH
Q 037787 65 NGLVEFSEFVALV 77 (163)
Q Consensus 65 ~g~i~~~ef~~~l 77 (163)
.|.+.-+||..++
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 5666666665554
No 239
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=37.44 E-value=89 Score=18.94 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=8.0
Q ss_pred CCCHHHHHHHHHHh
Q 037787 47 KPSPDQLETLIQKA 60 (163)
Q Consensus 47 ~~~~~~~~~l~~~~ 60 (163)
+-+.++++.++...
T Consensus 78 P~~~dElrai~~~~ 91 (112)
T PRK14981 78 PETRDELRAIFAKE 91 (112)
T ss_pred CCCHHHHHHHHHHh
Confidence 33555666666555
No 240
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=36.68 E-value=49 Score=15.20 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=10.6
Q ss_pred ccHHHHHHHHHHhCCCC
Q 037787 108 ITAAELAHSMAKLGHEL 124 (163)
Q Consensus 108 i~~~e~~~~l~~~~~~~ 124 (163)
++..|++..++..|.+.
T Consensus 4 l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 4 LTVAELKEELKERGLST 20 (35)
T ss_dssp SHHHHHHHHHHHTTS-S
T ss_pred CcHHHHHHHHHHCCCCC
Confidence 56667777777766553
No 241
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=36.56 E-value=83 Score=17.85 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 037787 6 PMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKAD 61 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 61 (163)
+..++.+++..++++|..+=..+ .+..+-...+.... ....+++.+..-+.
T Consensus 25 R~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~--~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 25 RRGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEY--PDSPEVREIVDFIR 75 (83)
T ss_dssp HTTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence 45789999999999999884432 35555555444421 22445666665554
No 242
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=36.45 E-value=1.2e+02 Score=19.60 Aligned_cols=115 Identities=16% Similarity=0.251 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhc---C
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS---S 84 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~---~ 84 (163)
.+++..-..++.++.... ..|.+...++...|. .++.-+..+++.+.. .|.|.+..+..+..-.... .
T Consensus 3 ~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~~--~GlV~~~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 3 MLSETEEDYLETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLER--LGLVEYEPYGGVTLTEKGREKAK 73 (154)
T ss_pred ccchHHHHHHHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHHH--CCCeEEecCCCeEEChhhHHHHH
Confidence 456666777788887764 678888888886654 333356677777743 4566665544332210000 0
Q ss_pred CCCCcHHHHHHHHH-hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 85 KSPYSEEQLRQLFR-MFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 85 ~~~~~~~~~~~~f~-~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
........+..++. .++ ++.++...--..+.+.++++.++.+.+.++
T Consensus 74 ~~~r~hrlle~fL~~~lg------~~~~~~~~ea~~leh~~s~~~~~rl~~~l~ 121 (154)
T COG1321 74 ELLRKHRLLERFLVDVLG------LDWEEAHEEAEGLEHALSDETAERLDELLG 121 (154)
T ss_pred HHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhC
Confidence 00001112223333 232 344444444444555678888888888776
No 243
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=35.98 E-value=63 Score=16.30 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCcccHHHHHHHHHH-hCCCCCHHHHHHHHHh
Q 037787 105 NGFITAAELAHSMAK-LGHELTAEELTGMIRE 135 (163)
Q Consensus 105 ~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~ 135 (163)
.+.+|.+.+..-|.. .|..++++++...+..
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 355888888888876 5788999998877654
No 244
>PHA02335 hypothetical protein
Probab=35.90 E-value=1e+02 Score=18.60 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=32.3
Q ss_pred CcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCC--cccHHHHHHHHHHhC
Q 037787 65 NGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNG--FITAAELAHSMAKLG 121 (163)
Q Consensus 65 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g--~i~~~e~~~~l~~~~ 121 (163)
-..|++++|..-+. ....+.+.|+.+.+.++- .+-...+..++..++
T Consensus 22 p~sVt~ddf~~Dlk----------Ri~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF~ 70 (118)
T PHA02335 22 PQSVTYDDFEEDLK----------RFKYIKRLFKRYLNTGELKTHLILNHIIILYNVFG 70 (118)
T ss_pred cccccHHHHHHHHH----------HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh
Confidence 35699999988886 345788888888766654 444555666665554
No 245
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=35.23 E-value=64 Score=21.64 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.1
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE 123 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 123 (163)
..+..+++|..||+++-=..+.+++.+++...|+-
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gII 87 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGII 87 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh
Confidence 46688999999999998889999999999877654
No 246
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=35.20 E-value=88 Score=17.75 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhh
Q 037787 121 GHELTAEELTGMIREADTDGDGRISFQEFAQAITSAAF 158 (163)
Q Consensus 121 ~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 158 (163)
|-.++++..+.+-+.++......|+++|+|.+-...+-
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~a~ 80 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGVAQ 80 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 33466666666666666666667999999988776653
No 247
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=35.13 E-value=1.6e+02 Score=23.20 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=44.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh---C-----CCCCcceehHHHHHHHh
Q 037787 20 IFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA---D-----TNSNGLVEFSEFVALVA 78 (163)
Q Consensus 20 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~---d-----~~~~g~i~~~ef~~~l~ 78 (163)
+|..+....++.++...|..+|+..|+..++..+..+++.+ + ....+.++-+.|..+..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 67777666679999999999999999977776666665444 2 22356688888887765
No 248
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=34.69 E-value=1.6e+02 Score=20.72 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCc
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNG 66 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g 66 (163)
++..++++++..++++|+.+=.. .++..+-.+.+... ....++++.+.+-+...+.|
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~f~~~s~rg 252 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIYRS---GLSVQQAVAELELQ--QFESPEVEELIDFIKASKRG 252 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHh--ccCCHHHHHHHHHHHccCCC
Confidence 46679999999999999887332 23445544444432 22344566666666443333
No 249
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=34.64 E-value=80 Score=17.08 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=11.4
Q ss_pred hhcCCCCCcccHHHHHHHHH
Q 037787 99 MFDRDGNGFITAAELAHSMA 118 (163)
Q Consensus 99 ~~D~~~~g~i~~~e~~~~l~ 118 (163)
.+|.....+|+.+++.+++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~ 30 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVR 30 (64)
T ss_pred cccCCCceeEeHHHHHHHHH
Confidence 34555556666666666554
No 250
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=34.45 E-value=63 Score=18.74 Aligned_cols=63 Identities=14% Similarity=0.309 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCcceehH
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLG-LKPSPDQLETLIQKADTNSNGLVEFS 71 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ 71 (163)
.-|.+++..+-..|......-...|++++|...-+.+. +.|+..+=.+|.+.+.. .+|.-.|.
T Consensus 10 dWsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~-~SGYs~Y~ 73 (88)
T PF05256_consen 10 DWSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEE-QSGYSIYR 73 (88)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHC-CSS--HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HhCCcHHH
Confidence 35667777777777777665566788888877776643 45677777788888843 35644443
No 251
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=34.42 E-value=1.2e+02 Score=19.05 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q 037787 91 EQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDG 140 (163)
Q Consensus 91 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 140 (163)
+.+..+-+.+...+-..-+.+.=..+|+.-| ++++||++++.......
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 3444444555444445556777778888776 88999999988875443
No 252
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=34.40 E-value=1.8e+02 Score=22.05 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=21.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCC
Q 037787 20 IFRSFDRNNDGSLTQLELGSLLRSLGLKP 48 (163)
Q Consensus 20 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~ 48 (163)
+|..+|.+....++..+-..++..++++.
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~ 190 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPH 190 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCc
Confidence 34455556677899999999998887654
No 253
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=34.36 E-value=73 Score=26.45 Aligned_cols=100 Identities=7% Similarity=0.139 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCCC-CcceehHHHHHHHhHHHhc--------CCCCCc-HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q 037787 52 QLETLIQKADTNS-NGLVEFSEFVALVAPELLS--------SKSPYS-EEQLRQLFRMFDRDGNGFITAAELAHSMAKLG 121 (163)
Q Consensus 52 ~~~~l~~~~d~~~-~g~i~~~ef~~~l~~~~~~--------~~~~~~-~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 121 (163)
-+..+|.+++..+ ...++..+.+.++...... ...+.. .-.+..++..||+..+|.|..-+|+..+..+.
T Consensus 421 l~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lc 500 (966)
T KOG4286|consen 421 LALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLC 500 (966)
T ss_pred HHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHh
Confidence 4556666666443 3445556555555432110 001111 12456789999999999999999999998877
Q ss_pred CCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 037787 122 HELTAEELTGMIREADTDGDGRISFQEFAQA 152 (163)
Q Consensus 122 ~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (163)
....++....+|..+...+. .+....|--+
T Consensus 501 k~~leek~~ylF~~vA~~~s-q~~q~~l~lL 530 (966)
T KOG4286|consen 501 KAHLEDKYRYLFKQVASSTS-QCDQRRLGLL 530 (966)
T ss_pred cchhHHHHHHHHHHHcCchh-hHHHHHHHHH
Confidence 66777888899998854443 3334444433
No 254
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=34.36 E-value=1.7e+02 Score=20.81 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 14 IAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 14 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
...+.++...+..+-+..++.+++...+. .+...+.++|... .| +++.+|+..++
T Consensus 4 ~~~i~~~~~~i~~~~~~~~~l~~lA~~~~-----~S~~~l~r~F~~~----~g-~s~~~yi~~~R 58 (289)
T PRK15121 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAG-----YSKWHLQRMFKDV----TG-HAIGAYIRARR 58 (289)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHC-----cCHHHHHHHHHHH----HC-cCHHHHHHHHH
Confidence 44566666666666666788888876544 5555677777766 23 67777777765
No 255
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.44 E-value=1.4e+02 Score=24.41 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCC----CCcHHHHHHHHHhhcCCCCCc
Q 037787 32 LTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKS----PYSEEQLRQLFRMFDRDGNGF 107 (163)
Q Consensus 32 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~----~~~~~~~~~~f~~~D~~~~g~ 107 (163)
++.+++. +.....++.++.++..+|. .+|.++-+++..++......... ....+....++...|+++.|.
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 6666666 3334455668888888877 78888888888777654432221 112233455788888888889
Q ss_pred ccHHHHHHHHHH
Q 037787 108 ITAAELAHSMAK 119 (163)
Q Consensus 108 i~~~e~~~~l~~ 119 (163)
+..+++..++..
T Consensus 78 ~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 78 ITNEDLEILLLQ 89 (646)
T ss_pred eeecchhHHHHh
Confidence 998888888875
No 256
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=33.15 E-value=81 Score=18.39 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcC-----CCCCcccHHHHHH
Q 037787 71 SEFVALVAPELLSSKSPYSEEQLRQLFRMFDR-----DGNGFITAAELAH 115 (163)
Q Consensus 71 ~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~-----~~~g~i~~~e~~~ 115 (163)
+-|+..+......+......+.+..++..++. ...|.|+.+...+
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~k 57 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKK 57 (90)
T ss_dssp HHHHHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHH
T ss_pred hHHHHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 45666666666555555555566666655543 1244555544443
No 257
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=32.97 E-value=44 Score=24.32 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
|++.-||+.++-++++.|+.- ..+|--|=..+...+++.+| .|+-+|+..
T Consensus 155 KrRVLFSqAQV~ELERRFrqQ-----RYLSAPERE~LA~~LrLT~T--QVKIWFQNr 204 (307)
T KOG0842|consen 155 KRRVLFSQAQVYELERRFRQQ-----RYLSAPEREHLASSLRLTPT--QVKIWFQNR 204 (307)
T ss_pred ccccccchhHHHHHHHHHHhh-----hccccHhHHHHHHhcCCCch--heeeeeecc
Confidence 568889999999999999873 35666666666566665555 566666433
No 258
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=32.90 E-value=1e+02 Score=17.77 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=27.4
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 30 GSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 30 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
-.|+..+|...|...-.-....+...+-..+|...++.||.=||-.+.+
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 3566777776666543333334455666666666677776655555544
No 259
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.87 E-value=94 Score=21.02 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=8.2
Q ss_pred hhCCCCCCceeHHHHHHH
Q 037787 135 EADTDGDGRISFQEFAQA 152 (163)
Q Consensus 135 ~~d~~~~g~i~~~eF~~~ 152 (163)
.|.+|+.|.|+....+.+
T Consensus 127 af~~dk~G~l~~~rIl~L 144 (195)
T PF11363_consen 127 AFQVDKEGNLNTSRILGL 144 (195)
T ss_pred HHhcCCCCCcCHHHHHHH
Confidence 334444455544444444
No 260
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=32.81 E-value=43 Score=15.75 Aligned_cols=10 Identities=0% Similarity=0.332 Sum_probs=5.3
Q ss_pred ccHHHHHHHH
Q 037787 108 ITAAELAHSM 117 (163)
Q Consensus 108 i~~~e~~~~l 117 (163)
+|.+||..++
T Consensus 2 Lsd~dF~~vF 11 (36)
T PF02209_consen 2 LSDEDFEKVF 11 (36)
T ss_dssp S-HHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 4556666664
No 261
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=32.43 E-value=85 Score=16.72 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHHhCC----CCCHHHHHHHHH
Q 037787 108 ITAAELAHSMAKLGH----ELTAEELTGMIR 134 (163)
Q Consensus 108 i~~~e~~~~l~~~~~----~~~~~~~~~~~~ 134 (163)
|..++|...++..|. ..+...+..++.
T Consensus 25 I~L~el~~~L~~~g~~~~~~~~~~~l~~~lD 55 (64)
T PF09494_consen 25 INLEELHAWLKASGIGFDRKVDPSKLKEWLD 55 (64)
T ss_pred ccHHHHHHHHHHcCCCccceeCHHHHHHHHH
Confidence 566666666665554 444555554443
No 262
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=32.42 E-value=1.2e+02 Score=21.22 Aligned_cols=49 Identities=27% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037787 3 NKQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQ 58 (163)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 58 (163)
|++++..+.-++..+.+.|+..+ .|-.-|=+++...+|+.-+ .|+-+|+
T Consensus 123 RKPRTIYSS~QLqaL~rRFQkTQ-----YLALPERAeLAAsLGLTQT--QVKIWFQ 171 (245)
T KOG0850|consen 123 RKPRTIYSSLQLQALNRRFQQTQ-----YLALPERAELAASLGLTQT--QVKIWFQ 171 (245)
T ss_pred cCCcccccHHHHHHHHHHHhhcc-----hhcCcHHHHHHHHhCCchh--Hhhhhhh
Confidence 46788899999999999998853 4444455555566665444 5555553
No 263
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=32.26 E-value=38 Score=17.81 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 111 AELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 111 ~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
+.+..++......++.+++..+..++|
T Consensus 10 dtLEkv~e~~~~~L~~~e~~~f~~AaD 36 (57)
T PF05321_consen 10 DTLEKVIEHNRYKLTDDELEAFNSAAD 36 (57)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 334444444433455555555554443
No 264
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=32.12 E-value=2e+02 Score=21.42 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=24.3
Q ss_pred hcCCCCCcccHHHHHHHHHHhCCCCC----------HHHHHHHHHHhCCC
Q 037787 24 FDRNNDGSLTQLELGSLLRSLGLKPS----------PDQLETLIQKADTN 63 (163)
Q Consensus 24 ~d~~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~l~~~~d~~ 63 (163)
.+.+..+.++..+...++..++.+.. .+++..++......
T Consensus 134 ~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 134 RKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 33344557888888888887765422 24566666655433
No 265
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=32.10 E-value=1.1e+02 Score=17.70 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 108 ITAAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 108 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
|+.++++.+.+-....+++++++.+...+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 66777777777766667776665554443
No 266
>PRK10236 hypothetical protein; Provisional
Probab=31.76 E-value=1.8e+02 Score=20.38 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHH
Q 037787 48 PSPDQLETLIQKADTNSNGLVEFSE 72 (163)
Q Consensus 48 ~~~~~~~~l~~~~d~~~~g~i~~~e 72 (163)
-+++++..+.+.+-.+++|..-+.|
T Consensus 17 cs~edL~~Lv~~Lt~d~dG~~R~te 41 (237)
T PRK10236 17 CSEEQLANFARLLTHNEKGKTRLSS 41 (237)
T ss_pred CCHHHHHHHHHHHhcCCCCCEeehh
Confidence 4566777777777666677765554
No 267
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=31.64 E-value=1.7e+02 Score=19.89 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.3
Q ss_pred CCCCcccHHHHHHHHHHhCCCCC
Q 037787 103 DGNGFITAAELAHSMAKLGHELT 125 (163)
Q Consensus 103 ~~~g~i~~~e~~~~l~~~~~~~~ 125 (163)
++-.+++.+|++..|+..|+...
T Consensus 66 ~gfly~~~eEL~e~Lk~~g~Rf~ 88 (210)
T COG1059 66 DGFLYLSEEELREKLKEVGYRFY 88 (210)
T ss_pred cccccCCHHHHHHHHHHhcchhc
Confidence 66677799999999998877643
No 268
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=2e+02 Score=20.57 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 14 IAELREIFRSF-DRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 14 ~~~~~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
...+...|..+ |+.-+..|-.+-+..++..+|+.+.+-.+--+--.+....-+..+-++|+..+..
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 34566667666 3444457888888999999998877554434444455555677888888876653
No 269
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=30.69 E-value=1.3e+02 Score=18.15 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 037787 6 PMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQK 59 (163)
Q Consensus 6 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 59 (163)
++.|+..+++++.++|..- ---..-+++|+..- +.++...++-+|+.
T Consensus 21 RTTFTS~QLkELErvF~ET--HYPDIYTREEiA~k-----idLTEARVQVWFQN 67 (125)
T KOG0484|consen 21 RTTFTSAQLKELERVFAET--HYPDIYTREEIALK-----IDLTEARVQVWFQN 67 (125)
T ss_pred hhhhhHHHHHHHHHHHHhh--cCCcchhHHHHHHh-----hhhhHHHHHHHHHh
Confidence 5668888888888888652 22235567776643 34666666666643
No 270
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=30.59 E-value=85 Score=16.14 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037787 10 DDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQ 58 (163)
Q Consensus 10 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 58 (163)
+..+........... -..|.++..||..-+.......+..++..++.
T Consensus 4 sd~dR~~~~~~L~~a--~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 4 SDADRERAVDLLRAA--FAEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred cHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 344444443333332 25789999999988877655666667766653
No 271
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=30.45 E-value=1.2e+02 Score=17.75 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=31.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 19 EIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 19 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
++...+..+-...++.+++...+. .+...+.++|... . .+++.+|+..++
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~~-----~S~~~l~r~f~~~----~-g~s~~~~i~~~R 58 (107)
T PRK10219 9 TLIAWIDEHIDQPLNIDVVAKKSG-----YSKWYLQRMFRTV----T-HQTLGDYIRQRR 58 (107)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHC-----CCHHHHHHHHHHH----H-CcCHHHHHHHHH
Confidence 333444344444577777775543 5555677777776 2 377888887775
No 272
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=30.36 E-value=79 Score=15.72 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037787 5 QPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60 (163)
Q Consensus 5 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 60 (163)
+...+++.++..+...|..- ...+..+...+...+| ++...|..+|..-
T Consensus 3 ~r~~~~~~~~~~L~~~f~~~-----~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (56)
T smart00389 3 KRTSFTPEQLEELEKEFQKN-----PYPSREEREELAAKLG--LSERQVKVWFQNR 51 (56)
T ss_pred CCCcCCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHC--cCHHHHHHhHHHH
Confidence 45568999999999988763 2677788888877776 4466777777543
No 273
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=30.35 E-value=1.3e+02 Score=18.32 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=37.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHH
Q 037787 20 IFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVAL 76 (163)
Q Consensus 20 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 76 (163)
.|..+..-++..+|.+++..+|...|.......+..+.+.+. | .++++.+..
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~----G-KdI~ELIa~ 59 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE----G-KTPHELIAA 59 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHH
Confidence 344444456667899999999999999888888888888882 2 456666653
No 274
>PHA02773 hypothetical protein; Provisional
Probab=30.24 E-value=72 Score=18.51 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=16.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCc
Q 037787 2 SNKQPMNLDDDQIAELREIFRSFDRNNDGS 31 (163)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~f~~~d~~~~g~ 31 (163)
|.+....|-+.+.+-+.+.|.....+.+|-
T Consensus 14 s~e~qi~lr~kqkell~rffeiae~de~gd 43 (112)
T PHA02773 14 SEEKQIKLRPKQKELLIRFFEIAEKDEDGD 43 (112)
T ss_pred chhhceeechhhHHHHHHHHHHheecCCCC
Confidence 333344455555666666666665555553
No 275
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.85 E-value=1.6e+02 Score=18.95 Aligned_cols=92 Identities=14% Similarity=0.294 Sum_probs=53.9
Q ss_pred HHHHhhcCCCCCcccHHHHHH---HHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHH
Q 037787 19 EIFRSFDRNNDGSLTQLELGS---LLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQ 95 (163)
Q Consensus 19 ~~f~~~d~~~~g~i~~~e~~~---~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 95 (163)
-.|+.+.. ||.++..|... +++. .+..+..++..+......-+...+++-.|...+...+.... ..+.+..
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~---R~eli~~ 107 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQ---RLELIGL 107 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHH---HHHHHHH
Confidence 67777754 55566665444 4332 45567778888887776556667888889888875542111 2233444
Q ss_pred HHHhhcCCCCCcccHHHHHHHHH
Q 037787 96 LFRMFDRDGNGFITAAELAHSMA 118 (163)
Q Consensus 96 ~f~~~D~~~~g~i~~~e~~~~l~ 118 (163)
++... .-||.++..|-.-+.+
T Consensus 108 mweIa--~ADg~l~e~Ed~vi~R 128 (148)
T COG4103 108 MWEIA--YADGELDESEDHVIWR 128 (148)
T ss_pred HHHHH--HccccccHHHHHHHHH
Confidence 44444 3456666655544443
No 276
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=29.61 E-value=1.7e+02 Score=19.42 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=27.6
Q ss_pred cCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhC
Q 037787 101 DRDGNGFITAAELAHSMAKL--GHELTAEELTGMIREAD 137 (163)
Q Consensus 101 D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d 137 (163)
.++....+|.++|.+.+... +..++++.+..++..+-
T Consensus 143 n~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 143 NPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred CcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 45556678999999888875 34588888888887764
No 277
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.50 E-value=1.2e+02 Score=17.46 Aligned_cols=62 Identities=13% Similarity=0.252 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCcceeh
Q 037787 8 NLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLG-LKPSPDQLETLIQKADTNSNGLVEF 70 (163)
Q Consensus 8 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~ 70 (163)
.-|.+++..+...|+.....-.+.++.++|...-+.+. +.|+..+=.+|++.+.. .+|.-.|
T Consensus 10 dWsTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~FE~-~SgyS~Y 72 (90)
T COG4476 10 DWSTEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDFEK-SSGYSLY 72 (90)
T ss_pred CccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHHHH-hcCccHH
Confidence 34667777788888887766677788888877766643 46777777788888743 3443333
No 278
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=29.50 E-value=2.2e+02 Score=20.60 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 16 ELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 16 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
.+.++...+..+-...++.+++...+. .+...+.++|+.. . .+++.+|+..++
T Consensus 219 ~~~~~~~~i~~~~~~~~sl~~lA~~~~-----~S~~~l~r~fk~~----~-g~s~~~~~~~~R 271 (322)
T PRK09393 219 RLGPLIDWMRAHLAEPHTVASLAARAA-----MSPRTFLRRFEAA----T-GMTPAEWLLRER 271 (322)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC-----cCHHHHHHHHHHH----H-CcCHHHHHHHHH
Confidence 344444444444444566666654432 4444566666555 2 266677766664
No 279
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.33 E-value=61 Score=29.45 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037787 87 PYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHEL----TAEELTGMIREADTDGDGRISFQEFAQAITSAA 157 (163)
Q Consensus 87 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (163)
+.+.+...+++..+|++.+|.|..+++..++..+..++ .... +.+...+-...++.|++.+-+..+....
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 34556778889999999999999999999999864442 1111 2222222234556777777776666543
No 280
>PRK01381 Trp operon repressor; Provisional
Probab=29.31 E-value=83 Score=18.73 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 037787 9 LDDDQIAELREIFRSFDRNNDGSLTQLELGSLL 41 (163)
Q Consensus 9 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 41 (163)
+|+.|.+.+...+..+..--.|.+|..|+..-+
T Consensus 33 lTp~Er~al~~R~~I~~~L~~g~~sQREIa~~l 65 (99)
T PRK01381 33 LTPDEREALGTRVRIVEELLRGELSQREIKQEL 65 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHh
Confidence 677777777777777654445667777666543
No 281
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=29.17 E-value=1.8e+02 Score=21.55 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=41.3
Q ss_pred HHHHHH--HhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHH
Q 037787 37 LGSLLR--SLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELA 114 (163)
Q Consensus 37 ~~~~l~--~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 114 (163)
|...+. +.|......++....+ .|.||-+|=+..+... ......+.++.+++.++ ||.+||.
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~----d~~~~~~~~~~~~~~lg------~t~~ef~ 339 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEY----DGEFPKEDLEYFLKYLG------ISEEEFW 339 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHh----cccccHHHHHHHHHHhC------CCHHHHH
Confidence 444443 3566554444433222 5788888888877652 23335677888888887 7888888
Q ss_pred HHH
Q 037787 115 HSM 117 (163)
Q Consensus 115 ~~l 117 (163)
.++
T Consensus 340 ~~~ 342 (343)
T TIGR03573 340 KTV 342 (343)
T ss_pred HHh
Confidence 765
No 282
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=29.14 E-value=1.8e+02 Score=20.76 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=31.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQ 58 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 58 (163)
++++-|+.+++.+++.-|+. +.+|+...=..+.+.++++ ...|.-+|+
T Consensus 248 RPRTAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgLN--EsQIKIWFQ 295 (342)
T KOG0493|consen 248 RPRTAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGLN--ESQIKIWFQ 295 (342)
T ss_pred CccccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCcC--HHHhhHHhh
Confidence 35677999999999888865 4566655555555656544 335655554
No 283
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=29.11 E-value=2.4e+02 Score=23.47 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 92 QLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 92 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
....+|+..-..+.-.+..+++... +.+++++..+..++...+..|+...|.+..-.
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 3456777777776666666665555 66788999999998866666999999887654
No 284
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=28.87 E-value=3.8e+02 Score=23.10 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=39.0
Q ss_pred hCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHh---cCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 44 LGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELL---SSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 44 ~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
+++.++++-+..+-+.. ++...-|+.|..++..... .-........+..+-.......+.-++.++++.++..
T Consensus 112 LNlGlnd~~~~~la~~t---g~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~~~~~~k~~~~~~~~~~l~~~~l~~l~~~ 187 (879)
T PRK09279 112 LNLGLNDETVEGLAKKT---GNERFAYDSYRRFIQMFGDVVLGIDHELFEEILEELKEKKGVKLDTDLTAEDLKELVER 187 (879)
T ss_pred hcCCCCHHHHHHHHHhc---CChhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHH
Confidence 34456666666655543 2335666666666654321 1111122333444444455566777888888777654
No 285
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=28.64 E-value=1e+02 Score=16.37 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 037787 108 ITAAELAHSMAKLGHELTAEELTGM 132 (163)
Q Consensus 108 i~~~e~~~~l~~~~~~~~~~~~~~~ 132 (163)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4578899999999999999998774
No 286
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=28.38 E-value=1e+02 Score=16.35 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=11.5
Q ss_pred HHHHHHHhCCCCCcceehHHHHH
Q 037787 53 LETLIQKADTNSNGLVEFSEFVA 75 (163)
Q Consensus 53 ~~~l~~~~d~~~~g~i~~~ef~~ 75 (163)
+++=+..+..++...+++++...
T Consensus 36 l~~R~~~~~~g~~~~i~~eev~~ 58 (63)
T TIGR02574 36 LDRRLADYKADPSKASPWEEVRA 58 (63)
T ss_pred HHHHHHHHHcCCcCCCCHHHHHH
Confidence 33344455555555555555444
No 287
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=28.31 E-value=1.3e+02 Score=17.38 Aligned_cols=47 Identities=9% Similarity=0.190 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 31 SLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 31 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
.++..+|..++..+.....+.+=..+.+..-.+.. .++-.+...++.
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~~~-~~T~~Qv~~il~ 50 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLKVLEAAAKTNN-CFTCAQVKQILS 50 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhcCC-ceeHHHHHHHHH
Confidence 34555555555555443333332333333322212 566666666554
No 288
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=28.23 E-value=1.4e+02 Score=17.99 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=27.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037787 107 FITAAELAHSMAKLGHELTAEELTGMIREAD 137 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 137 (163)
.||.++++.+|+..|..+.+..+..+...+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999999999888888888873
No 289
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=27.92 E-value=1.5e+02 Score=18.15 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHh
Q 037787 15 AELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 15 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
..+.++...+..+-...++.+++...+. .+...+..+|... .| +++.+|+..++
T Consensus 9 ~~i~~~~~~I~~~~~~~~sl~~lA~~~g-----~S~~~l~r~Fk~~----~G-~s~~~~l~~~R 62 (127)
T PRK11511 9 ITIHSILDWIEDNLESPLSLEKVSERSG-----YSKWHLQRMFKKE----TG-HSLGQYIRSRK 62 (127)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHC-----cCHHHHHHHHHHH----HC-cCHHHHHHHHH
Confidence 3445555555555566688888886543 5555677777766 23 77888877665
No 290
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=27.36 E-value=1.6e+02 Score=18.15 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=21.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 104 GNGFITAAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
..|.++.+++..-+..-+..++..++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 356777777766665545557777766666555
No 291
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=27.36 E-value=1.4e+02 Score=17.57 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 107 FITAAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 107 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
.|+.++++++-+-....+++++++.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 467777777777666667777766655444
No 292
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=27.35 E-value=98 Score=16.26 Aligned_cols=29 Identities=10% Similarity=0.144 Sum_probs=17.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 106 GFITAAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 106 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
+.+...++..++...+ |+.+.+...|..-
T Consensus 21 ~~L~E~DL~~L~~kS~--ms~qqVr~WFa~~ 49 (56)
T PF11569_consen 21 KQLQEEDLDELCDKSR--MSYQQVRDWFAER 49 (56)
T ss_dssp ----TTHHHHHHHHTT----HHHHHHHHHHH
T ss_pred CCccHhhHHHHHHHHC--CCHHHHHHHHHHh
Confidence 4566677888888776 7788888877654
No 293
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=27.21 E-value=2.3e+02 Score=19.95 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH----HHHhCCCCCcceehHHHHHHHhH
Q 037787 4 KQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETL----IQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 4 ~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l----~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.....+|+++..++..-+.. ..|...-........|+.+++.++... -..+.. . .+++++|...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~------~lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~~--~-G~~~~~~r~~ir~ 84 (256)
T TIGR02933 14 CAPGELSPDQLQQFDQAWQR------QRHIEQAVVRAADEIGVVIPPSLLEEAPQALAQALDE--Q-ALDAAERRAMLAH 84 (256)
T ss_pred CCCCCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH--c-CCCHHHHHHHHHH
Confidence 45667888888777655444 244444455666778999999988444 333322 2 3688888776653
No 294
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=27.19 E-value=1.5e+02 Score=17.76 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=30.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 037787 104 GNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQ 151 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (163)
..-.+|.++++.+++..|..+....+..+.+.+.. .++.+++.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-----k~i~elIa 56 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALEG-----KDIKDLLS 56 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHhh
Confidence 33468999999999999988877777777776632 34555553
No 295
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=26.92 E-value=75 Score=14.36 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=7.5
Q ss_pred CCcccHHHHHHHHH
Q 037787 105 NGFITAAELAHSMA 118 (163)
Q Consensus 105 ~g~i~~~e~~~~l~ 118 (163)
.|.|+.+++.++..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 34555555555544
No 296
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=26.15 E-value=2.1e+02 Score=19.19 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHH---HHHHHHhCCCCCcceehHHHHHHH
Q 037787 26 RNNDGSLTQLELGSLLRSLGLKPSPDQL---ETLIQKADTNSNGLVEFSEFVALV 77 (163)
Q Consensus 26 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~---~~l~~~~d~~~~g~i~~~ef~~~l 77 (163)
.|.+|+++ .....+...++ .+.+++ -.+++.++.-+-|.-+..|.+-+=
T Consensus 45 LD~~GyL~-~~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLllQ 96 (194)
T PF04963_consen 45 LDDDGYLT-ESLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLLQ 96 (194)
T ss_dssp BTTTSTCS-S-HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHHH
T ss_pred CCCCCccC-CCHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHHH
Confidence 46677665 33344445454 444444 445567778788888888865443
No 297
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.90 E-value=3.2e+02 Score=21.27 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCCCcccHHHHHHHHHH---hC-CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcC
Q 037787 27 NNDGSLTQLELGSLLRS---LG-LKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDR 102 (163)
Q Consensus 27 ~~~g~i~~~e~~~~l~~---~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~ 102 (163)
.++...+..||...... .+ -.++-+.++.|-+.+|.+.+|.|+.+|=-.+++..+....... .-.+.|..
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~---kr~~~fH~--- 113 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTR---KRSEKFHG--- 113 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchh---hhhhhccC---
Confidence 44445566666544321 11 2344566888889999999999999988888876554443221 11223333
Q ss_pred CCCCcccHHHHHHHHHHh
Q 037787 103 DGNGFITAAELAHSMAKL 120 (163)
Q Consensus 103 ~~~g~i~~~e~~~~l~~~ 120 (163)
.|..|+.+++....+..
T Consensus 114 -dD~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 114 -DDKHITVEDLWEAWKES 130 (575)
T ss_pred -CccceeHHHHHHHHHhh
Confidence 45668888888777764
No 298
>COG5562 Phage envelope protein [General function prediction only]
Probab=25.23 E-value=59 Score=20.53 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=29.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037787 104 GNGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITSA 156 (163)
Q Consensus 104 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (163)
.+|.|+....+.+..-... .....+.. ....+..|..+|++|++.+-..
T Consensus 53 ~~~~Il~~g~k~~~~V~~~-~n~~~i~~---al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 53 SDGVILIKGVKKVVGVAEV-FNTTLIKT---ALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred cCCEEEeeccccccceecc-cCHHHHHH---HHHHHhcCCccHHHHHHHHHhC
Confidence 3566665555555433221 33333444 4445678999999999988663
No 299
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=24.86 E-value=1.1e+02 Score=18.10 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 037787 9 LDDDQIAELREIFRSFDRNNDGSLTQLELGSL 40 (163)
Q Consensus 9 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~ 40 (163)
+|+.|+..+...+..+..--.+.+|..|+...
T Consensus 33 LTp~E~~~l~~R~~i~~~Ll~~~~tQrEIa~~ 64 (94)
T TIGR01321 33 LTRSEREDLGDRIRIVNELLNGNMSQREIASK 64 (94)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55566655555555553212244555555543
No 300
>smart00153 VHP Villin headpiece domain.
Probab=24.80 E-value=84 Score=14.74 Aligned_cols=10 Identities=0% Similarity=0.325 Sum_probs=5.3
Q ss_pred ccHHHHHHHH
Q 037787 108 ITAAELAHSM 117 (163)
Q Consensus 108 i~~~e~~~~l 117 (163)
++.+||..++
T Consensus 2 LsdeeF~~vf 11 (36)
T smart00153 2 LSDEDFEEVF 11 (36)
T ss_pred CCHHHHHHHH
Confidence 4555555553
No 301
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=24.67 E-value=2.2e+02 Score=18.95 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=28.0
Q ss_pred cCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhC
Q 037787 101 DRDGNGFITAAELAHSMAKL--GHELTAEELTGMIREAD 137 (163)
Q Consensus 101 D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d 137 (163)
.++....+|.++|.+.+... |..++++.+..++..+-
T Consensus 145 n~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 183 (187)
T smart00222 145 NPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIK 183 (187)
T ss_pred CCccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 44455689999999998886 35588888888887763
No 302
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=24.65 E-value=42 Score=17.13 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=18.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCH-HHHHHHHHH
Q 037787 20 IFRSFDRNNDGSLTQLELGSLLRSLGLKPSP-DQLETLIQK 59 (163)
Q Consensus 20 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~l~~~ 59 (163)
+|..+...+++.+|..|+...+.. .++.. ..++++++.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~--~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT--SNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC--T-TTHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC--CCcchHHHHHHHHHH
Confidence 344444444567777777765542 33332 245555543
No 303
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=24.52 E-value=1.3e+02 Score=16.39 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q 037787 92 QLRQLFRMFDRDGNGFITAAELAHSMAKL----GHELTAEELTGMIREA 136 (163)
Q Consensus 92 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 136 (163)
.+..+...++....--+-..+++.++..+ |...+++.+..+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34445555544433445556676666654 5556777777777654
No 304
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=24.23 E-value=1.6e+02 Score=17.07 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=24.4
Q ss_pred CcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037787 65 NGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAK 119 (163)
Q Consensus 65 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 119 (163)
||.++-.|--.+-....... ........+...+........+..++...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMG---LDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 77777777665555433321 12223333333333222222455566665555
No 305
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=24.22 E-value=2.4e+02 Score=19.26 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=8.9
Q ss_pred HHHHHHHhhCCCCCCce
Q 037787 128 ELTGMIREADTDGDGRI 144 (163)
Q Consensus 128 ~~~~~~~~~d~~~~g~i 144 (163)
-+..+.+.+|++..|.|
T Consensus 210 kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 210 KLIKFVQSFDPDSTEPI 226 (246)
T ss_pred HHHHHHHhcCCCCcCce
Confidence 34555555555555544
No 306
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=24.22 E-value=72 Score=16.68 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCCcceehHHHHHHHh
Q 037787 54 ETLIQKADTNSNGLVEFSEFVALVA 78 (163)
Q Consensus 54 ~~l~~~~d~~~~g~i~~~ef~~~l~ 78 (163)
--++..+.+.+.|..+++.+..+..
T Consensus 17 gY~yhLYrsek~G~rdYEKY~~LAL 41 (56)
T TIGR02736 17 AYIYHLYRSQKKGERDYEKYANLAL 41 (56)
T ss_pred HHHHHhhhhhcccccCHHHHhhhhc
Confidence 3467888888999999999988764
No 307
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=24.06 E-value=3.1e+02 Score=20.46 Aligned_cols=97 Identities=15% Similarity=0.281 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHH
Q 037787 13 QIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQ 92 (163)
Q Consensus 13 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 92 (163)
+++.+..-|.. |.|....+-.++|......+.-..-..-++-+-+.+-..=+|++=|.|...-+.. ....
T Consensus 42 e~~A~l~Efr~-DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~---------~nP~ 111 (357)
T PLN02508 42 EFEALLQEFKT-DYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK---------TNPV 111 (357)
T ss_pred HHHHHHHHHHh-CccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc---------CChH
Confidence 33333333332 5666667777777664443211111112344445554555777777776655432 2235
Q ss_pred HHHHHHhhcCCC---CCcccHHHHHHHHHHhCCCC
Q 037787 93 LRQLFRMFDRDG---NGFITAAELAHSMAKLGHEL 124 (163)
Q Consensus 93 ~~~~f~~~D~~~---~g~i~~~e~~~~l~~~~~~~ 124 (163)
+.++|..+..|. .|.| -++|..+|..+
T Consensus 112 lae~F~lMaRDEARHAGFl-----Nkam~Df~l~l 141 (357)
T PLN02508 112 VAEIFTLMSRDEARHAGFL-----NKALSDFNLAL 141 (357)
T ss_pred HHHHHHHhCchhHHHHhHH-----HHHHHHcCccc
Confidence 778888887663 4544 35666665443
No 308
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.82 E-value=1.1e+02 Score=15.18 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=19.3
Q ss_pred CCccc-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 105 NGFIT-AAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 105 ~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
.|.|+ ..++.+-+...|..+++..++.+++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 45555 333444445567778888877777653
No 309
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.80 E-value=2.4e+02 Score=19.70 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=31.7
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 037787 26 RNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKAD 61 (163)
Q Consensus 26 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 61 (163)
-+++|.+...++...+..+-.+++..|+..+-.++.
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLR 197 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 478899999999999999999999999988877764
No 310
>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC. This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].
Probab=23.68 E-value=3e+02 Score=20.13 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHHh
Q 037787 47 KPSPDQLETLIQKA 60 (163)
Q Consensus 47 ~~~~~~~~~l~~~~ 60 (163)
..+..|+...+..+
T Consensus 136 q~S~~El~~~l~~l 149 (325)
T PF09724_consen 136 QASEAELRQALKEL 149 (325)
T ss_pred CccHHHHHHHHHHC
Confidence 45666776666654
No 311
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=23.46 E-value=1.5e+02 Score=16.74 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=12.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 037787 108 ITAAELAHSMAKLGHELTAEELTGM 132 (163)
Q Consensus 108 i~~~e~~~~l~~~~~~~~~~~~~~~ 132 (163)
|+..+.+.+...+| +++.+++.+
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~i 31 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERV 31 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHH
Confidence 44555566665555 455444443
No 312
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.26 E-value=1.4e+02 Score=16.24 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 105 NGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 105 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
.|.++.++...+.... ...+.+..++...... |.=.+..|+..+..
T Consensus 25 ~~vlt~~e~~~i~~~~---~~~~k~~~Lld~l~~k--g~~af~~F~~~L~~ 70 (80)
T cd01671 25 DGVLTEEEYEKIRSES---TRQDKARKLLDILPRK--GPKAFQSFLQALQE 70 (80)
T ss_pred cCCCCHHHHHHHHcCC---ChHHHHHHHHHHHHhc--ChHHHHHHHHHHHh
Confidence 3556666665554421 2344455555555432 23355666666554
No 313
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=23.09 E-value=1.6e+02 Score=16.91 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 037787 48 PSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHE 123 (163)
Q Consensus 48 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 123 (163)
++...+.++.+......-..--+++....+.... .+.+..+-....-.+--.|+.+|+.-+++..|.+
T Consensus 14 i~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l--------~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 14 ITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYL--------EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred CCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 4444555555554332222222555555544322 2223333333333445568888888888877754
No 314
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=23.08 E-value=76 Score=18.84 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=8.1
Q ss_pred ceeHHHHHHHHHHH
Q 037787 143 RISFQEFAQAITSA 156 (163)
Q Consensus 143 ~i~~~eF~~~l~~~ 156 (163)
.++.++.+..|...
T Consensus 71 ~~s~~e~~~~l~~~ 84 (105)
T cd03035 71 ALDAAKAIALMLEH 84 (105)
T ss_pred cCCHHHHHHHHHhC
Confidence 35566666666553
No 315
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=23.01 E-value=1.9e+02 Score=17.55 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=40.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHhH
Q 037787 20 IFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKADTNSNGLVEFSEFVALVAP 79 (163)
Q Consensus 20 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 79 (163)
.|..+..-++..+|.+++..+|...|.......+..+.+.+. | .++++.+..-..
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~----G-Kdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE----G-KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHHhHh
Confidence 344444556668999999999999999888888888888772 2 556777665543
No 316
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=22.92 E-value=1.4e+02 Score=16.92 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q 037787 36 ELGSLLRSLGLKPSPDQLETL 56 (163)
Q Consensus 36 e~~~~l~~~~~~~~~~~~~~l 56 (163)
|+..+|+.+|-.+++++..-+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 566788888988888876543
No 317
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=22.66 E-value=86 Score=14.38 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=11.5
Q ss_pred HHHhCCCCCHHHHHHHHHhhCC
Q 037787 117 MAKLGHELTAEELTGMIREADT 138 (163)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~d~ 138 (163)
|..+| ++.+.+...+...+.
T Consensus 9 L~~mG--f~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 9 LMEMG--FSREQAREALRACNG 28 (37)
T ss_dssp HHHHT--S-HHHHHHHHHHTTT
T ss_pred HHHcC--CCHHHHHHHHHHcCC
Confidence 33446 667777777766644
No 318
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=22.42 E-value=58 Score=19.04 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=18.6
Q ss_pred CcceehHHHHHHHhHHHh-cCCCCCcHHHHHHHHHhh
Q 037787 65 NGLVEFSEFVALVAPELL-SSKSPYSEEQLRQLFRMF 100 (163)
Q Consensus 65 ~g~i~~~ef~~~l~~~~~-~~~~~~~~~~~~~~f~~~ 100 (163)
||.++-.|--.+...... ..........+...|...
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~ 52 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKL 52 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHH
Confidence 777777776666554431 122233344555555555
No 319
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=22.38 E-value=1.1e+02 Score=22.43 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=34.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037787 3 NKQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQ 58 (163)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 58 (163)
||++-..|+-++.+|++=|-. +-+||++.=.++-+.+ ++++..|.-+|+
T Consensus 236 RKKRcPYTK~QtlELEkEFlf-----N~YitkeKR~ElSr~l--NLTeRQVKIWFQ 284 (308)
T KOG0487|consen 236 RKKRCPYTKHQTLELEKEFLF-----NMYITKEKRLELSRTL--NLTERQVKIWFQ 284 (308)
T ss_pred ccccCCchHHHHHHHHHHHHH-----HHHHhHHHHHHHHHhc--ccchhheeeeeh
Confidence 578888999999999885543 3357777666665644 577777777775
No 320
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.24 E-value=37 Score=15.23 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=7.4
Q ss_pred HHHHhCCCCCcceehH
Q 037787 56 LIQKADTNSNGLVEFS 71 (163)
Q Consensus 56 l~~~~d~~~~g~i~~~ 71 (163)
++..-|.+++-+|+.+
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 3344445555555443
No 321
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=22.19 E-value=1.8e+02 Score=16.97 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=19.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC
Q 037787 105 NGFITAAELAHSMAKLGHELTAEELTGMIREADTDGDG 142 (163)
Q Consensus 105 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g 142 (163)
.|.||.+ .++..++ ++.+|+......++..+..
T Consensus 47 ~Glis~~---EA~~rY~--Ls~eEf~~W~~av~rhge~ 79 (90)
T PF06627_consen 47 GGLISVE---EACRRYG--LSEEEFESWQRAVDRHGEN 79 (90)
T ss_dssp CTTS-HH---HHHHCTT--SSHHHHHHHHHHCCT--TT
T ss_pred cCCCCHH---HHHHHhC--CCHHHHHHHHHHHHHHhHH
Confidence 3666644 3455554 7888888888877765543
No 322
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=22.09 E-value=1.6e+02 Score=16.36 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHHHh
Q 037787 47 KPSPDQLETLIQKA 60 (163)
Q Consensus 47 ~~~~~~~~~l~~~~ 60 (163)
..+..|++.+...+
T Consensus 53 ~fS~sEm~aI~~EL 66 (71)
T PF06569_consen 53 SFSPSEMQAIAEEL 66 (71)
T ss_pred CCCHHHHHHHHHHH
Confidence 34444555554443
No 323
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=21.86 E-value=2.9e+02 Score=19.26 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=29.8
Q ss_pred HHHHHhCCCCCcceehHHHHHHHhHHHhcCCCCCcHHHHHHHHHhhcCCCC
Q 037787 55 TLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRQLFRMFDRDGN 105 (163)
Q Consensus 55 ~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 105 (163)
+++........|-|+++|.+.-+...........+.+.+.++.+.+-+=+.
T Consensus 104 EvC~at~~~nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~ 154 (249)
T KOG3341|consen 104 EVCLATKHTNGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGS 154 (249)
T ss_pred HHHHHhhcccCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCC
Confidence 334444455577899999998666555444344455556555555543333
No 324
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=21.83 E-value=1e+02 Score=16.33 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=5.8
Q ss_pred cCCCCCcccHHHH
Q 037787 25 DRNNDGSLTQLEL 37 (163)
Q Consensus 25 d~~~~g~i~~~e~ 37 (163)
+.+++|.|+...+
T Consensus 25 ~~~~~g~Vpi~~i 37 (61)
T PF05383_consen 25 DSNPDGWVPISTI 37 (61)
T ss_dssp CTTTTTBEEHHHH
T ss_pred HhcCCCcEeHHHH
Confidence 3444455444443
No 325
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=21.57 E-value=3e+02 Score=19.42 Aligned_cols=10 Identities=0% Similarity=0.062 Sum_probs=3.9
Q ss_pred cceehHHHHH
Q 037787 66 GLVEFSEFVA 75 (163)
Q Consensus 66 g~i~~~ef~~ 75 (163)
+.++.+++..
T Consensus 198 ~~isl~~lA~ 207 (290)
T PRK10572 198 SEFDIESVAQ 207 (290)
T ss_pred CCCCHHHHHH
Confidence 3344443333
No 326
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=21.51 E-value=87 Score=20.52 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=27.0
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037787 89 SEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHELTAEELTGMIREA 136 (163)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 136 (163)
+..++..++..+-..+...++..+|...+- .|..+|+++++.....+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 345666777777555555688877777643 35558898888877766
No 327
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.01 E-value=1.2e+02 Score=20.70 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=20.7
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh
Q 037787 96 LFRMFDRDGNGFITAAELAHSMAKL 120 (163)
Q Consensus 96 ~f~~~D~~~~g~i~~~e~~~~l~~~ 120 (163)
+..-+|.+++|.++.+++..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3447889999999999999988754
No 328
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.82 E-value=2.3e+02 Score=17.87 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037787 111 AELAHSMAKLGHELTAEELTGMIREADTDGDGRISFQEFAQAITS 155 (163)
Q Consensus 111 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (163)
.++..++...+.+++..|+.++|+.-|-.+- +---++|+.++.+
T Consensus 102 ~Dm~~I~~~~~f~vS~pElsAlfR~~~hkN~-r~CGDq~lR~FLk 145 (155)
T COG4807 102 DDMLAILTEQQFRVSMPELSALFRAPDHKNF-RECGDQFLRYFLK 145 (155)
T ss_pred chHHHHHhccCcccccHHHHHHHhCCCccch-hhhHHHHHHHHHH
Confidence 3678888888889999999999987643211 1112456665554
No 329
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.18 E-value=1.1e+02 Score=13.64 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=7.7
Q ss_pred CCcccHHHHHHHH
Q 037787 105 NGFITAAELAHSM 117 (163)
Q Consensus 105 ~g~i~~~e~~~~l 117 (163)
.|.||.+||.+.-
T Consensus 14 ~G~IseeEy~~~k 26 (31)
T PF09851_consen 14 KGEISEEEYEQKK 26 (31)
T ss_pred cCCCCHHHHHHHH
Confidence 4666666665543
Done!