Query 037789
Match_columns 101
No_of_seqs 251 out of 1375
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 9.9E-31 2.2E-35 182.6 8.6 99 1-100 396-499 (499)
2 PLN02169 fatty acid (omega-1)- 100.0 7.7E-29 1.7E-33 174.4 8.1 99 1-99 397-499 (500)
3 KOG0157 Cytochrome P450 CYP4/C 100.0 5.7E-29 1.2E-33 175.0 6.7 100 2-101 395-497 (497)
4 PLN02500 cytochrome P450 90B1 100.0 3.3E-28 7.2E-33 170.5 9.0 98 1-98 385-488 (490)
5 PLN03195 fatty acid omega-hydr 100.0 3.1E-28 6.8E-33 171.5 7.8 99 2-100 415-516 (516)
6 PLN02774 brassinosteroid-6-oxi 99.9 1E-27 2.2E-32 167.2 8.1 95 1-98 368-462 (463)
7 PLN03141 3-epi-6-deoxocathaste 99.9 9E-28 1.9E-32 167.0 7.8 95 1-100 356-450 (452)
8 PLN02302 ent-kaurenoic acid ox 99.9 2.3E-27 5E-32 165.8 8.7 96 2-101 393-489 (490)
9 PLN00168 Cytochrome P450; Prov 99.9 1.8E-27 3.9E-32 167.9 7.9 101 1-101 409-518 (519)
10 PLN02394 trans-cinnamate 4-mon 99.9 3.1E-27 6.6E-32 166.0 9.0 100 2-101 396-503 (503)
11 PLN02290 cytokinin trans-hydro 99.9 3.1E-27 6.7E-32 166.4 7.6 96 2-100 417-515 (516)
12 PLN02987 Cytochrome P450, fami 99.9 8.2E-27 1.8E-31 163.3 9.1 98 2-100 372-469 (472)
13 PTZ00404 cytochrome P450; Prov 99.9 4E-27 8.6E-32 164.7 7.5 92 2-99 387-482 (482)
14 PLN02426 cytochrome P450, fami 99.9 5.7E-27 1.2E-31 165.0 8.1 99 2-100 397-500 (502)
15 PF00067 p450: Cytochrome P450 99.9 3.7E-27 8.1E-32 160.9 6.0 95 2-96 365-463 (463)
16 PLN02738 carotene beta-ring hy 99.9 1.1E-26 2.4E-31 167.2 8.5 99 2-100 492-595 (633)
17 PLN00110 flavonoid 3',5'-hydro 99.9 7.8E-27 1.7E-31 164.3 7.6 99 2-100 392-497 (504)
18 PLN02971 tryptophan N-hydroxyl 99.9 1.5E-26 3.3E-31 164.0 8.3 99 1-99 429-533 (543)
19 PLN02936 epsilon-ring hydroxyl 99.9 2.6E-26 5.7E-31 161.1 8.3 99 2-100 380-482 (489)
20 PLN02196 abscisic acid 8'-hydr 99.9 2.5E-26 5.5E-31 160.3 7.5 93 2-99 369-462 (463)
21 PLN02655 ent-kaurene oxidase 99.9 3.8E-26 8.2E-31 159.4 7.8 100 1-101 363-465 (466)
22 PLN02183 ferulate 5-hydroxylas 99.9 4.9E-26 1.1E-30 160.6 8.0 98 2-99 406-511 (516)
23 PLN03018 homomethionine N-hydr 99.9 7.6E-26 1.6E-30 160.4 8.9 99 2-100 417-524 (534)
24 PLN02966 cytochrome P450 83A1 99.9 5.2E-26 1.1E-30 159.9 7.3 77 2-78 394-471 (502)
25 PLN03234 cytochrome P450 83B1; 99.9 7E-26 1.5E-30 159.0 7.7 98 2-99 391-498 (499)
26 PLN02687 flavonoid 3'-monooxyg 99.9 8.4E-26 1.8E-30 159.4 7.6 99 2-100 400-509 (517)
27 PLN03112 cytochrome P450 famil 99.9 2.8E-25 6.1E-30 156.5 8.0 99 2-100 399-508 (514)
28 KOG0156 Cytochrome P450 CYP2 s 99.9 2.4E-25 5.2E-30 156.2 7.4 98 1-100 388-488 (489)
29 KOG0159 Cytochrome P450 CYP11/ 99.9 6.3E-25 1.4E-29 152.6 6.1 98 2-100 419-518 (519)
30 KOG0684 Cytochrome P450 [Secon 99.9 2.3E-23 4.9E-28 142.8 7.9 100 2-101 380-486 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 1.5E-22 3.3E-27 139.9 6.3 89 1-99 321-410 (411)
32 PLN02648 allene oxide synthase 99.8 1.8E-20 4E-25 131.7 5.5 75 2-79 380-464 (480)
33 PF09201 SRX: SRX; InterPro: 84.7 0.84 1.8E-05 27.6 1.9 22 48-69 19-40 (148)
34 PF08492 SRP72: SRP72 RNA-bind 84.4 0.82 1.8E-05 23.5 1.6 9 20-28 43-51 (59)
35 PRK14759 potassium-transportin 63.1 3.2 7E-05 18.2 0.4 6 20-25 24-29 (29)
36 KOG3302 TATA-box binding prote 62.7 3.6 7.8E-05 26.4 0.7 34 18-51 50-83 (200)
37 PF09604 Potass_KdpF: F subuni 59.7 4 8.8E-05 17.2 0.4 6 20-25 20-25 (25)
38 KOG3506 40S ribosomal protein 58.5 4.5 9.7E-05 20.5 0.5 10 41-50 13-22 (56)
39 PF12444 Sox_N: Sox developmen 57.7 9.1 0.0002 21.2 1.7 19 58-76 61-79 (84)
40 COG2101 SPT15 TATA-box binding 53.5 5.6 0.00012 25.1 0.5 36 18-53 35-70 (185)
41 cd04518 TBP_archaea archaeal T 50.6 5.2 0.00011 25.1 -0.0 35 18-52 29-63 (174)
42 PRK00394 transcription factor; 47.7 11 0.00025 23.7 1.2 34 18-51 28-61 (179)
43 cd00652 TBP_TLF TATA box bindi 47.0 24 0.00052 22.1 2.5 56 18-74 29-87 (174)
44 cd04516 TBP_eukaryotes eukaryo 46.7 13 0.00029 23.3 1.4 34 18-51 29-62 (174)
45 TIGR02115 potass_kdpF K+-trans 46.7 5.6 0.00012 17.0 -0.2 7 20-26 19-25 (26)
46 PF02663 FmdE: FmdE, Molybdenu 44.9 26 0.00056 20.6 2.4 22 46-67 4-25 (131)
47 PLN00062 TATA-box-binding prot 38.2 9.8 0.00021 24.0 -0.1 55 18-72 29-85 (179)
48 PF14459 Prok-E2_C: Prokaryoti 36.7 8.7 0.00019 22.4 -0.5 18 35-52 103-120 (131)
49 KOG2376 Signal recognition par 33.0 25 0.00053 26.6 1.2 8 20-27 581-588 (652)
50 PHA03162 hypothetical protein; 32.5 29 0.00064 20.9 1.2 24 43-66 2-25 (135)
51 PTZ00218 40S ribosomal protein 29.5 24 0.00052 17.8 0.5 10 41-50 11-20 (54)
52 PF11297 DUF3098: Protein of u 29.5 29 0.00062 18.5 0.8 12 14-25 30-41 (69)
53 PF14510 ABC_trans_N: ABC-tran 27.1 15 0.00032 19.9 -0.6 19 9-27 23-41 (85)
54 PF07886 BA14K: BA14K-like pro 26.6 63 0.0014 14.3 1.5 16 35-50 16-31 (31)
55 PF00352 TBP: Transcription fa 24.9 10 0.00023 20.7 -1.5 34 19-52 32-65 (86)
56 PF15442 DUF4629: Domain of un 21.4 45 0.00097 20.6 0.7 9 46-54 128-136 (150)
57 PF05953 Allatostatin: Allatos 20.8 57 0.0012 10.8 0.7 6 40-45 6-11 (11)
58 cd04517 TLF TBP-like factors ( 20.3 29 0.00063 21.8 -0.3 36 18-53 121-156 (174)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.9e-31 Score=182.64 Aligned_cols=99 Identities=25% Similarity=0.442 Sum_probs=84.2
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCcc
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEI 80 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~ 80 (101)
++++|++||||++||||++|+||||.+.+.+ ...+.+|+|||.|+|.|+|++||++|+|+.++.||++|+++..+....
T Consensus 396 ~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~ 474 (499)
T KOG0158|consen 396 MIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTII 474 (499)
T ss_pred EeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccC
Confidence 4789999999999999999999999977643 446789999999999999999999999999999999999998773221
Q ss_pred cc-----CCCccCCCceEEEEEecC
Q 037789 81 IR-----APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 81 ~~-----~~~~~~~~~~~v~~~~R~ 100 (101)
.. ...+.+.+|+++++++|+
T Consensus 475 ~~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 475 PLEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred cccCCccceeeecCCceEEEEEeCC
Confidence 11 234567888999999985
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.96 E-value=7.7e-29 Score=174.38 Aligned_cols=99 Identities=18% Similarity=0.341 Sum_probs=82.4
Q ss_pred CCCcccccCCCCCC-CCCCCcCCCCCCCCCCCCc-CCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC
Q 037789 1 MVVPSAIHLNPETY-TDPFVFNPWRWKHLAENNV-TSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG 78 (101)
Q Consensus 1 ~~~~~~~~~d~~~~-~~p~~F~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~ 78 (101)
++++|++||||++| +||++|+||||++++.... ..+..|+|||+|+|.|+|++||++|++++++.|+++|+++..++.
T Consensus 397 ~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~ 476 (500)
T PLN02169 397 VICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH 476 (500)
T ss_pred EEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC
Confidence 36889999999999 8999999999997543211 236789999999999999999999999999999999999987654
Q ss_pred cccc--CCCccCCCceEEEEEec
Q 037789 79 EIIR--APTMGFGKGYYIKVAEK 99 (101)
Q Consensus 79 ~~~~--~~~~~~~~~~~v~~~~R 99 (101)
.... ..++.+++|+++++++|
T Consensus 477 ~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 477 KIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred CcccccceEEecCCCEEEEEEeC
Confidence 3322 23457889999999987
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.95 E-value=5.7e-29 Score=175.03 Aligned_cols=100 Identities=25% Similarity=0.409 Sum_probs=86.4
Q ss_pred CCcccccCCCCCCC-CCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC--
Q 037789 2 VVPSAIHLNPETYT-DPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG-- 78 (101)
Q Consensus 2 ~~~~~~~~d~~~~~-~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~-- 78 (101)
++++++|||+.+|+ ||++|+||||+++......++++|+|||+|+|.|+|++||++||+++++.++++|+++++.+.
T Consensus 395 i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~~ 474 (497)
T KOG0157|consen 395 ISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDKP 474 (497)
T ss_pred EehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCCc
Confidence 57889999999996 999999999997644334457899999999999999999999999999999999999988764
Q ss_pred ccccCCCccCCCceEEEEEecCC
Q 037789 79 EIIRAPTMGFGKGYYIKVAEKSI 101 (101)
Q Consensus 79 ~~~~~~~~~~~~~~~v~~~~R~~ 101 (101)
......++.+..|++|++++|+.
T Consensus 475 ~~~~~~~l~~~~gl~v~~~~r~~ 497 (497)
T KOG0157|consen 475 KPVPELTLRPKNGLKVKLRPRGS 497 (497)
T ss_pred eeeeEEEEEecCCeEEEEEeCCC
Confidence 33345577889999999999974
No 4
>PLN02500 cytochrome P450 90B1
Probab=99.95 E-value=3.3e-28 Score=170.52 Aligned_cols=98 Identities=35% Similarity=0.785 Sum_probs=80.5
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCCc------CCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeee
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENNV------TSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQ 74 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~------~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~ 74 (101)
++++|++||||++|+||++|+||||++++.... ..+..++|||+|+|.|+|+++|++|++++++.++++|+++.
T Consensus 385 ~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~ 464 (490)
T PLN02500 385 LPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWEL 464 (490)
T ss_pred EechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEE
Confidence 368899999999999999999999997542111 23567999999999999999999999999999999999998
Q ss_pred ccCCccccCCCccCCCceEEEEEe
Q 037789 75 VKPGEIIRAPTMGFGKGYYIKVAE 98 (101)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~~~ 98 (101)
.+++.........+++|++|++++
T Consensus 465 ~~~~~~~~~~~~~~~~~l~~~~~~ 488 (490)
T PLN02500 465 AEADQAFAFPFVDFPKGLPIRVRR 488 (490)
T ss_pred cCCCcceecccccCCCCceEEEEe
Confidence 765543333344567899999876
No 5
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.95 E-value=3.1e-28 Score=171.52 Aligned_cols=99 Identities=21% Similarity=0.360 Sum_probs=81.2
Q ss_pred CCcccccCCCCCC-CCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCcc
Q 037789 2 VVPSAIHLNPETY-TDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEI 80 (101)
Q Consensus 2 ~~~~~~~~d~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~ 80 (101)
+++|++||||++| +||++|+||||++.+......+..++|||+|+|.|+|++||++|++++++.++++|++++.++...
T Consensus 415 ~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~~ 494 (516)
T PLN03195 415 YVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPV 494 (516)
T ss_pred EehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCcc
Confidence 5789999999999 999999999999643211224567999999999999999999999999999999999998754332
Q ss_pred cc--CCCccCCCceEEEEEecC
Q 037789 81 IR--APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 81 ~~--~~~~~~~~~~~v~~~~R~ 100 (101)
.. ..++.+..+++|++++|+
T Consensus 495 ~~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 495 KYRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred eeeeeeEEecCCCEEEEEEeCC
Confidence 22 224567889999999985
No 6
>PLN02774 brassinosteroid-6-oxidase
Probab=99.95 E-value=1e-27 Score=167.24 Aligned_cols=95 Identities=36% Similarity=0.758 Sum_probs=80.5
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCcc
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEI 80 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~ 80 (101)
+++++++||||++|+||++|+||||++.+. .....++|||+|+|.|+|+++|.+|++++++.|+++|++++.++...
T Consensus 368 ~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~---~~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~ 444 (463)
T PLN02774 368 YVYTREINYDPFLYPDPMTFNPWRWLDKSL---ESHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKL 444 (463)
T ss_pred EEehHHhcCCcccCCChhccCchhcCCCCc---CCCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCcc
Confidence 367899999999999999999999996542 11235999999999999999999999999999999999999876554
Q ss_pred ccCCCccCCCceEEEEEe
Q 037789 81 IRAPTMGFGKGYYIKVAE 98 (101)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~ 98 (101)
...+.+.+++|++|++++
T Consensus 445 ~~~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 445 MKFPRVEAPNGLHIRVSP 462 (463)
T ss_pred ccCCCCCCCCCceEEeee
Confidence 444556688999999874
No 7
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.95 E-value=9e-28 Score=166.99 Aligned_cols=95 Identities=32% Similarity=0.743 Sum_probs=82.6
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCcc
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEI 80 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~ 80 (101)
+++.+++|+||++|+||++|+||||++.+. .+..++|||+|+|.|+|++||.+|++++++.|+++|+++..++..
T Consensus 356 ~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~- 430 (452)
T PLN03141 356 LAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI- 430 (452)
T ss_pred EEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe-
Confidence 367899999999999999999999997532 356899999999999999999999999999999999998766533
Q ss_pred ccCCCccCCCceEEEEEecC
Q 037789 81 IRAPTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~R~ 100 (101)
....++.+.+++.|.+++|+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 431 VNFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred eecccccCCCCceEEEEeCC
Confidence 23357788899999999996
No 8
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.94 E-value=2.3e-27 Score=165.82 Aligned_cols=96 Identities=28% Similarity=0.662 Sum_probs=82.6
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC-cc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG-EI 80 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~-~~ 80 (101)
++.+++||||++|+||++|+||||++... .+..++|||+|+|.|+|++||.+|++++++.++++|++++.+++ ..
T Consensus 393 ~~~~~~~rd~~~~~dP~~F~PeR~~~~~~----~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~ 468 (490)
T PLN02302 393 AWFRQVHMDPEVYPNPKEFDPSRWDNYTP----KAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGCKV 468 (490)
T ss_pred eeHHHhcCCcccCCCccccChhhcCCCCC----CCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCCcc
Confidence 57889999999999999999999996432 46689999999999999999999999999999999999987553 33
Q ss_pred ccCCCccCCCceEEEEEecCC
Q 037789 81 IRAPTMGFGKGYYIKVAEKSI 101 (101)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~R~~ 101 (101)
.......+.+++.+++++|++
T Consensus 469 ~~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 469 MYLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred eeCCCCCCCCCceEEEEeccC
Confidence 333457788999999999875
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.94 E-value=1.8e-27 Score=167.91 Aligned_cols=101 Identities=17% Similarity=0.362 Sum_probs=81.6
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCC-----CcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeec
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAEN-----NVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQV 75 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~ 75 (101)
+++++++||||++|+||++|+||||++.... ....+..++|||.|+|.|+|++||.+|++++++.|+++|++++.
T Consensus 409 ~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~ 488 (519)
T PLN00168 409 NFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEV 488 (519)
T ss_pred EEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeC
Confidence 3678999999999999999999999964211 01124579999999999999999999999999999999999987
Q ss_pred cCCcccc----CCCccCCCceEEEEEecCC
Q 037789 76 KPGEIIR----APTMGFGKGYYIKVAEKSI 101 (101)
Q Consensus 76 ~~~~~~~----~~~~~~~~~~~v~~~~R~~ 101 (101)
++..... .....+++++++++++|+.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 489 PGDEVDFAEKREFTTVMAKPLRARLVPRRT 518 (519)
T ss_pred CCCcCChhhhceeEEeecCCcEEEEEeccC
Confidence 6543222 1244567889999999974
No 10
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.94 E-value=3.1e-27 Score=165.96 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=81.0
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCC--CcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAEN--NVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGE 79 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~ 79 (101)
+++|++||||++|+||++|+||||++.+.. .......++|||.|+|+|+|++||++|++++++.++++|++++.++..
T Consensus 396 ~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~ 475 (503)
T PLN02394 396 VNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS 475 (503)
T ss_pred EchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC
Confidence 678999999999999999999999865321 122356799999999999999999999999999999999999876542
Q ss_pred -cccC-----CCccCCCceEEEEEecCC
Q 037789 80 -IIRA-----PTMGFGKGYYIKVAEKSI 101 (101)
Q Consensus 80 -~~~~-----~~~~~~~~~~v~~~~R~~ 101 (101)
.... ..+..+..+.+++.+|+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 503 (503)
T PLN02394 476 KIDVSEKGGQFSLHIAKHSTVVFKPRSA 503 (503)
T ss_pred cCccccccCceeeccCCCceEEeecCCC
Confidence 2222 123357789999999973
No 11
>PLN02290 cytokinin trans-hydroxylase
Probab=99.94 E-value=3.1e-27 Score=166.44 Aligned_cols=96 Identities=25% Similarity=0.369 Sum_probs=80.7
Q ss_pred CCcccccCCCCCC-CCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCcc
Q 037789 2 VVPSAIHLNPETY-TDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEI 80 (101)
Q Consensus 2 ~~~~~~~~d~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~ 80 (101)
++.|++||||++| +||++|+||||++... .....++|||.|+|.|+|++||++|++++++.|+++|++++.++...
T Consensus 417 ~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~~ 493 (516)
T PLN02290 417 IPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYRH 493 (516)
T ss_pred ecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCccc
Confidence 6789999999999 8999999999995321 23457999999999999999999999999999999999998765321
Q ss_pred --ccCCCccCCCceEEEEEecC
Q 037789 81 --IRAPTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 81 --~~~~~~~~~~~~~v~~~~R~ 100 (101)
....++.+.+++++++++|+
T Consensus 494 ~~~~~~~~~p~~~~~~~~~~~~ 515 (516)
T PLN02290 494 APVVVLTIKPKYGVQVCLKPLN 515 (516)
T ss_pred CccceeeecCCCCCeEEEEeCC
Confidence 12345677899999999986
No 12
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.94 E-value=8.2e-27 Score=163.27 Aligned_cols=98 Identities=36% Similarity=0.741 Sum_probs=84.9
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCccc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEII 81 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~ 81 (101)
++.+++|+||++|+||++|+||||++.... ......++|||+|+|.|+|++||.+|++++++.|+++|++++.++....
T Consensus 372 ~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~ 450 (472)
T PLN02987 372 ASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDKLV 450 (472)
T ss_pred EehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCcee
Confidence 578899999999999999999999975431 1234679999999999999999999999999999999999998776655
Q ss_pred cCCCccCCCceEEEEEecC
Q 037789 82 RAPTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 82 ~~~~~~~~~~~~v~~~~R~ 100 (101)
...++.+.+++++++++|+
T Consensus 451 ~~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 451 FFPTTRTQKRYPINVKRRD 469 (472)
T ss_pred ecccccCCCCceEEEEecc
Confidence 5567788899999999986
No 13
>PTZ00404 cytochrome P450; Provisional
Probab=99.94 E-value=4e-27 Score=164.70 Aligned_cols=92 Identities=18% Similarity=0.365 Sum_probs=77.3
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCccc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEII 81 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~ 81 (101)
++.+++||||++|+||++|+||||++.. ....++|||+|+|.|+|++||++|++++++.++++|+++..++....
T Consensus 387 ~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~ 461 (482)
T PTZ00404 387 INYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKID 461 (482)
T ss_pred eeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCC
Confidence 5789999999999999999999998642 35689999999999999999999999999999999999886544321
Q ss_pred c----CCCccCCCceEEEEEec
Q 037789 82 R----APTMGFGKGYYIKVAEK 99 (101)
Q Consensus 82 ~----~~~~~~~~~~~v~~~~R 99 (101)
. ..++. ++++++.+++|
T Consensus 462 ~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 462 ETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred cccccceeec-CCCceeeeecC
Confidence 1 12233 78899999887
No 14
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.94 E-value=5.7e-27 Score=165.04 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=81.0
Q ss_pred CCcccccCCCCCC-CCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCc-
Q 037789 2 VVPSAIHLNPETY-TDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGE- 79 (101)
Q Consensus 2 ~~~~~~~~d~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~- 79 (101)
++++++||||++| +||++|+||||++++......+..++|||+|+|.|+|+++|++|++++++.++++|+++..++..
T Consensus 397 ~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~ 476 (502)
T PLN02426 397 YHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNR 476 (502)
T ss_pred EchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCC
Confidence 5789999999999 99999999999974321123456799999999999999999999999999999999999864322
Q ss_pred -cc--cCCCccCCCceEEEEEecC
Q 037789 80 -II--RAPTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 80 -~~--~~~~~~~~~~~~v~~~~R~ 100 (101)
.. ...++.+.+|++|++++|.
T Consensus 477 ~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 477 APRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred CCcccceeEEecCCCEEEEEEEcc
Confidence 12 1235677899999999985
No 15
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.94 E-value=3.7e-27 Score=160.91 Aligned_cols=95 Identities=28% Similarity=0.454 Sum_probs=75.8
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCccc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEII 81 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~ 81 (101)
++++++|+||++|+||++|+||||++.+.........++|||.|+|.|+|+++|++|++++++.++++|++++.++....
T Consensus 365 ~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~ 444 (463)
T PF00067_consen 365 VSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPE 444 (463)
T ss_dssp EEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCC
Confidence 57789999999999999999999998765223467889999999999999999999999999999999999997654332
Q ss_pred c--C--CCccCCCceEEEE
Q 037789 82 R--A--PTMGFGKGYYIKV 96 (101)
Q Consensus 82 ~--~--~~~~~~~~~~v~~ 96 (101)
. . ..+.++.++.|+|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 445 PQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp EEECSCSSSEEESSSEEEE
T ss_pred CccccCceEeeCCCcEEeC
Confidence 2 1 2455677777765
No 16
>PLN02738 carotene beta-ring hydroxylase
Probab=99.94 E-value=1.1e-26 Score=167.19 Aligned_cols=99 Identities=21% Similarity=0.428 Sum_probs=81.1
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCC--CCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAE--NNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGE 79 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~ 79 (101)
+++|.+||||++|+||++|+||||+.... ........++|||.|+|.|+|++||++|++++++.|+++|++++.++..
T Consensus 492 ~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~ 571 (633)
T PLN02738 492 ISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAP 571 (633)
T ss_pred ecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCC
Confidence 57899999999999999999999985321 1122456799999999999999999999999999999999999876532
Q ss_pred -ccc--CCCccCCCceEEEEEecC
Q 037789 80 -IIR--APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 80 -~~~--~~~~~~~~~~~v~~~~R~ 100 (101)
... ..++.+++++++++++|.
T Consensus 572 ~~~~~~~~~~~p~~~l~v~l~~R~ 595 (633)
T PLN02738 572 PVKMTTGATIHTTEGLKMTVTRRT 595 (633)
T ss_pred CcccccceEEeeCCCcEEEEEECC
Confidence 211 234567889999999985
No 17
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.94 E-value=7.8e-27 Score=164.35 Aligned_cols=99 Identities=23% Similarity=0.404 Sum_probs=80.7
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcC---CCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVT---SAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG 78 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~---~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~ 78 (101)
++++++|+||++|+||++|+||||+++...... ....++|||+|+|.|+|++||++|++++++.|+++|++++.++.
T Consensus 392 ~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~ 471 (504)
T PLN00110 392 VNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV 471 (504)
T ss_pred EeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC
Confidence 578999999999999999999999965321111 13479999999999999999999999999999999999987654
Q ss_pred cccc----CCCccCCCceEEEEEecC
Q 037789 79 EIIR----APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 79 ~~~~----~~~~~~~~~~~v~~~~R~ 100 (101)
.... ..++.++.++.+++++|+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 472 ELNMDEAFGLALQKAVPLSAMVTPRL 497 (504)
T ss_pred ccCcccccccccccCCCceEeeccCC
Confidence 3321 234467789999999884
No 18
>PLN02971 tryptophan N-hydroxylase
Probab=99.94 E-value=1.5e-26 Score=164.04 Aligned_cols=99 Identities=19% Similarity=0.362 Sum_probs=79.4
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCC--cCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENN--VTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG 78 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~--~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~ 78 (101)
++++|++||||++|+||++|+||||+++..+. ...+..++|||+|+|.|+|++||+.|++++++.|+++|+++..++.
T Consensus 429 ~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~ 508 (543)
T PLN02971 429 LLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSE 508 (543)
T ss_pred EECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCC
Confidence 46899999999999999999999999754211 1235679999999999999999999999999999999999987543
Q ss_pred -cccc---CCCccCCCceEEEEEec
Q 037789 79 -EIIR---APTMGFGKGYYIKVAEK 99 (101)
Q Consensus 79 -~~~~---~~~~~~~~~~~v~~~~R 99 (101)
.... ..++..++.+.+.+++|
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 509 TRVELMESSHDMFLSKPLVMVGELR 533 (543)
T ss_pred CCcchhhhcCcccccccceeeeeec
Confidence 2221 12444566888888887
No 19
>PLN02936 epsilon-ring hydroxylase
Probab=99.93 E-value=2.6e-26 Score=161.12 Aligned_cols=99 Identities=24% Similarity=0.412 Sum_probs=81.7
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCC--CcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAEN--NVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGE 79 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~ 79 (101)
++.+++||||++|+||++|+||||+..+.. ....+..++|||.|+|.|+|++||++|++++++.|+++|+++..++++
T Consensus 380 ~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~ 459 (489)
T PLN02936 380 ISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQD 459 (489)
T ss_pred ecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCc
Confidence 678999999999999999999999964321 112245799999999999999999999999999999999999887654
Q ss_pred cccC--CCccCCCceEEEEEecC
Q 037789 80 IIRA--PTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 80 ~~~~--~~~~~~~~~~v~~~~R~ 100 (101)
.... ..+.+++++.|++++|.
T Consensus 460 ~~~~~~~~~~~~~~~~v~~~~R~ 482 (489)
T PLN02936 460 IVMTTGATIHTTNGLYMTVSRRR 482 (489)
T ss_pred cceecceEEeeCCCeEEEEEeee
Confidence 3322 23457789999999985
No 20
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.93 E-value=2.5e-26 Score=160.27 Aligned_cols=93 Identities=31% Similarity=0.596 Sum_probs=80.0
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC-cc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG-EI 80 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~-~~ 80 (101)
++++++|+||++|+||++|+||||++.. .+..++|||.|+|.|+|+++|++|++++++.|+++|+++..+++ ..
T Consensus 369 ~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~ 443 (463)
T PLN02196 369 PLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSNGI 443 (463)
T ss_pred eeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCCce
Confidence 5788999999999999999999999632 35689999999999999999999999999999999999987653 33
Q ss_pred ccCCCccCCCceEEEEEec
Q 037789 81 IRAPTMGFGKGYYIKVAEK 99 (101)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~R 99 (101)
....+..++++++|+++..
T Consensus 444 ~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 444 QYGPFALPQNGLPIALSRK 462 (463)
T ss_pred EEcccccCCCCceEEEecC
Confidence 4444567889999998764
No 21
>PLN02655 ent-kaurene oxidase
Probab=99.93 E-value=3.8e-26 Score=159.45 Aligned_cols=100 Identities=13% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCc-
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGE- 79 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~- 79 (101)
+++.+++||||++|+||++|+||||++.+.. ......++|||+|+|.|+|++||..+++++++.|+++|++++.++..
T Consensus 363 ~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~ 441 (466)
T PLN02655 363 AINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDEE 441 (466)
T ss_pred EecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCcc
Confidence 3688999999999999999999999975431 12346899999999999999999999999999999999999875432
Q ss_pred ccc--CCCccCCCceEEEEEecCC
Q 037789 80 IIR--APTMGFGKGYYIKVAEKSI 101 (101)
Q Consensus 80 ~~~--~~~~~~~~~~~v~~~~R~~ 101 (101)
... ..++.+++++.+.+++|..
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 442 KEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred ccchhheeEeecCCcEEEEeecCC
Confidence 111 2234577899999999863
No 22
>PLN02183 ferulate 5-hydroxylase
Probab=99.93 E-value=4.9e-26 Score=160.57 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=75.7
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCC-cCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCcc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENN-VTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEI 80 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~ 80 (101)
+++|++||||++|+||++|+||||++.+... ......++|||+|+|.|+|++||++|++++++.++++|+++..++...
T Consensus 406 ~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~ 485 (516)
T PLN02183 406 INAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKP 485 (516)
T ss_pred EehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCC
Confidence 6789999999999999999999999754311 123567999999999999999999999999999999999998765321
Q ss_pred ---cc----CCCccCCCceEEEEEec
Q 037789 81 ---IR----APTMGFGKGYYIKVAEK 99 (101)
Q Consensus 81 ---~~----~~~~~~~~~~~v~~~~R 99 (101)
.. .........+.+.+++|
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 486 SELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred CCCChhhccccccccCCCcEEEeecC
Confidence 11 11112344566667666
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=99.93 E-value=7.6e-26 Score=160.39 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=79.9
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCC-----cCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeecc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENN-----VTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVK 76 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~ 76 (101)
++.|++|+||++|+||++|+||||++.++.. ...+..++|||.|+|.|+|++||++|++++++.|+++|+++..+
T Consensus 417 ~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~ 496 (534)
T PLN03018 417 VCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQ 496 (534)
T ss_pred EChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCC
Confidence 6789999999999999999999999653211 12356799999999999999999999999999999999999865
Q ss_pred CC-cccc---CCCccCCCceEEEEEecC
Q 037789 77 PG-EIIR---APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 77 ~~-~~~~---~~~~~~~~~~~v~~~~R~ 100 (101)
+. .... ...+..++++++.+++|.
T Consensus 497 ~~~~~~~~~~~~~~~~p~~~~v~~~~R~ 524 (534)
T PLN03018 497 DFGPLSLEEDDASLLMAKPLLLSVEPRL 524 (534)
T ss_pred CCCCCCccccccceecCCCeEEEEEecc
Confidence 43 2211 123345789999999984
No 24
>PLN02966 cytochrome P450 83A1
Probab=99.93 E-value=5.2e-26 Score=159.92 Aligned_cols=77 Identities=22% Similarity=0.426 Sum_probs=67.3
Q ss_pred CCcccccCCCCCC-CCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC
Q 037789 2 VVPSAIHLNPETY-TDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG 78 (101)
Q Consensus 2 ~~~~~~~~d~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~ 78 (101)
+++|++||||++| +||++|+||||++.+.........++|||+|+|.|+|++||++|++++++.++++|+++..++.
T Consensus 394 ~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~ 471 (502)
T PLN02966 394 VNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGM 471 (502)
T ss_pred EecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCC
Confidence 6789999999999 9999999999996543212245689999999999999999999999999999999999987654
No 25
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.93 E-value=7e-26 Score=158.99 Aligned_cols=98 Identities=20% Similarity=0.336 Sum_probs=76.3
Q ss_pred CCcccccCCCCCC-CCCCCcCCCCCCCCCCC--CcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC
Q 037789 2 VVPSAIHLNPETY-TDPFVFNPWRWKHLAEN--NVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG 78 (101)
Q Consensus 2 ~~~~~~~~d~~~~-~~p~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~ 78 (101)
++++++||||++| +||++|+||||+++... .......++|||+|+|.|+|+++|++|++++++.|+++|++++.++.
T Consensus 391 ~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~ 470 (499)
T PLN03234 391 VNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGI 470 (499)
T ss_pred EehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCC
Confidence 5789999999999 89999999999975431 11235679999999999999999999999999999999999987653
Q ss_pred c---ccc----CCCccCCCceEEEEEec
Q 037789 79 E---IIR----APTMGFGKGYYIKVAEK 99 (101)
Q Consensus 79 ~---~~~----~~~~~~~~~~~v~~~~R 99 (101)
. ... .....+++.+.+.+++|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 471 KPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred CCCCCCcccccccccccCCCeEEEeecC
Confidence 1 111 11223556667766665
No 26
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.93 E-value=8.4e-26 Score=159.40 Aligned_cols=99 Identities=25% Similarity=0.413 Sum_probs=77.9
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCC----cCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccC
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENN----VTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKP 77 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 77 (101)
++.|++||||++|+||++|+||||++..... ...+..++|||+|+|.|+|++||++|++++++.|+++|++++.++
T Consensus 400 ~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~ 479 (517)
T PLN02687 400 VNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADG 479 (517)
T ss_pred EecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCC
Confidence 6789999999999999999999999753211 123457999999999999999999999999999999999998754
Q ss_pred Cc---ccc--CCCc--cCCCceEEEEEecC
Q 037789 78 GE---IIR--APTM--GFGKGYYIKVAEKS 100 (101)
Q Consensus 78 ~~---~~~--~~~~--~~~~~~~v~~~~R~ 100 (101)
.. ... ...+ .+..++++++++|.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 480 QTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred CCcccCCcccccceeeecCCCeEEeeccCC
Confidence 32 111 1122 33467888888885
No 27
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.92 E-value=2.8e-25 Score=156.48 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=78.3
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCC--C--cCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccC
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAEN--N--VTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKP 77 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~--~--~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 77 (101)
++++++||||++|+||++|+||||...... . ......++|||.|+|.|+|++||++|++++++.++++|++++.++
T Consensus 399 ~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~ 478 (514)
T PLN03112 399 INTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDG 478 (514)
T ss_pred EehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 578999999999999999999998653211 0 112457999999999999999999999999999999999998654
Q ss_pred C---cccc----CCCccCCCceEEEEEecC
Q 037789 78 G---EIIR----APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 78 ~---~~~~----~~~~~~~~~~~v~~~~R~ 100 (101)
. .... ...+..++++++.+++|.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 508 (514)
T PLN03112 479 LRPEDIDTQEVYGMTMPKAKPLRAVATPRL 508 (514)
T ss_pred CCcccCCCccccCcccccCCCeEEEeecCC
Confidence 2 1111 122345779999999995
No 28
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2.4e-25 Score=156.24 Aligned_cols=98 Identities=27% Similarity=0.450 Sum_probs=78.2
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCcc
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEI 80 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~ 80 (101)
++++|++||||++|+||++|+||||++.+ +.......++|||.|+|.|+|..+|++++.++++.++++|+++...+ .+
T Consensus 388 ~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~-~~ 465 (489)
T KOG0156|consen 388 LVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG-KV 465 (489)
T ss_pred EEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC-CC
Confidence 46899999999999999999999999974 11226788999999999999999999999999999999999998865 22
Q ss_pred cc---CCCccCCCceEEEEEecC
Q 037789 81 IR---APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 81 ~~---~~~~~~~~~~~v~~~~R~ 100 (101)
+. ..++..+.++.+...+|.
T Consensus 466 d~~e~~~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 466 DMEEAGLTLKKKKPLKAVPVPRL 488 (489)
T ss_pred CCcccccceecCCcceeeeecCC
Confidence 22 123334556666655553
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=6.3e-25 Score=152.61 Aligned_cols=98 Identities=19% Similarity=0.325 Sum_probs=85.3
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCCccc
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPGEII 81 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~ 81 (101)
++.+.+.+||++|++|++|+||||++.+. ...++..++|||.|+|+|+|+++|.+||.+.++.++++|+++...+.++.
T Consensus 419 l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~pv~ 497 (519)
T KOG0159|consen 419 LFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEPVE 497 (519)
T ss_pred EeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCCCcc
Confidence 57788899999999999999999998773 25678999999999999999999999999999999999999998765443
Q ss_pred c--CCCccCCCceEEEEEecC
Q 037789 82 R--APTMGFGKGYYIKVAEKS 100 (101)
Q Consensus 82 ~--~~~~~~~~~~~v~~~~R~ 100 (101)
. ...+.|..++.++|++|+
T Consensus 498 ~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 498 YVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred ceeEEEEcCCCCcceeeeeCC
Confidence 3 345678889999999885
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=2.3e-23 Score=142.84 Aligned_cols=100 Identities=21% Similarity=0.397 Sum_probs=80.2
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCc--C--CCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccC
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNV--T--SAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKP 77 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~--~--~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 77 (101)
+++..+|+||++|+||+.|+|+||++++++.. . -.+.++|||+|.+.|+|+.||.+|++.++..+++.|++++.++
T Consensus 380 lsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~ 459 (486)
T KOG0684|consen 380 LSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG 459 (486)
T ss_pred eccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC
Confidence 45566999999999999999999997765321 1 1334699999999999999999999999999999999999985
Q ss_pred Cc--ccc-CCCccCCCceEEEEEecCC
Q 037789 78 GE--IIR-APTMGFGKGYYIKVAEKSI 101 (101)
Q Consensus 78 ~~--~~~-~~~~~~~~~~~v~~~~R~~ 101 (101)
.- .+. ..++.|..+++++.+.|+.
T Consensus 460 ~~P~~d~s~~v~~P~g~v~irYK~R~~ 486 (486)
T KOG0684|consen 460 PFPEVDYSRMVMQPEGDVRIRYKRRPL 486 (486)
T ss_pred CCCCCCHHHhhcCCCCCceEEEeecCC
Confidence 22 121 1255677889999998863
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.5e-22 Score=139.86 Aligned_cols=89 Identities=25% Similarity=0.489 Sum_probs=73.6
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHHHHHHHHHHHHHHHHhhceeeeccCC-c
Q 037789 1 MVVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAEFSKVLMTLFLNVLATKYSWSQVKPG-E 79 (101)
Q Consensus 1 ~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~-~ 79 (101)
++++++.||||++|++|++|+|+||. ..|+|||+|+|.|+|.+||++|++++++.++++|+.....+. .
T Consensus 321 ~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~~~~ 390 (411)
T COG2124 321 LLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAEPPP 390 (411)
T ss_pred EecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCCCCC
Confidence 36789999999999999999999985 569999999999999999999999999999999998876651 1
Q ss_pred cccCCCccCCCceEEEEEec
Q 037789 80 IIRAPTMGFGKGYYIKVAEK 99 (101)
Q Consensus 80 ~~~~~~~~~~~~~~v~~~~R 99 (101)
.....+..+..+..+.++.+
T Consensus 391 ~~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 391 LVRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred ccccccccCCCcceeeeecC
Confidence 22233555666677776654
No 32
>PLN02648 allene oxide synthase
Probab=99.81 E-value=1.8e-20 Score=131.67 Aligned_cols=75 Identities=17% Similarity=0.342 Sum_probs=61.1
Q ss_pred CCcccccCCCCCCCCCCCcCCCCCCCCCCCCcCCCCceeee---------cCCCCCcccHHHHHHHHHHHHHHHHhhce-
Q 037789 2 VVPSAIHLNPETYTDPFVFNPWRWKHLAENNVTSAKNFIPF---------GEGIRLCPGAEFSKVLMTLFLNVLATKYS- 71 (101)
Q Consensus 2 ~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~F---------g~G~r~C~G~~~a~~~~~~~~~~ll~~f~- 71 (101)
++.+.+||||++|+||++|+|+||++.... ....+++| |+|+|.|+|++||++|++++++.|+++|+
T Consensus 380 ~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~ 456 (480)
T PLN02648 380 GYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDS 456 (480)
T ss_pred EChHHHhCCcccCCCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCE
Confidence 577899999999999999999999864321 12233443 67789999999999999999999999998
Q ss_pred eeeccCCc
Q 037789 72 WSQVKPGE 79 (101)
Q Consensus 72 ~~~~~~~~ 79 (101)
+++.++..
T Consensus 457 ~~l~~~~~ 464 (480)
T PLN02648 457 FEIEVDTS 464 (480)
T ss_pred EeecCCcc
Confidence 88766543
No 33
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=84.71 E-value=0.84 Score=27.62 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.3
Q ss_pred CcccHHHHHHHHHHHHHHHHhh
Q 037789 48 LCPGAEFSKVLMTLFLNVLATK 69 (101)
Q Consensus 48 ~C~G~~~a~~~~~~~~~~ll~~ 69 (101)
.|.|++||..++-.++++++..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999865
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=84.38 E-value=0.82 Score=23.55 Aligned_cols=9 Identities=33% Similarity=0.568 Sum_probs=6.6
Q ss_pred cCCCCCCCC
Q 037789 20 FNPWRWKHL 28 (101)
Q Consensus 20 F~P~R~~~~ 28 (101)
-||||||..
T Consensus 43 PDPERWLP~ 51 (59)
T PF08492_consen 43 PDPERWLPK 51 (59)
T ss_pred CCccccCch
Confidence 378999854
No 35
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=63.07 E-value=3.2 Score=18.16 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=4.2
Q ss_pred cCCCCC
Q 037789 20 FNPWRW 25 (101)
Q Consensus 20 F~P~R~ 25 (101)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 567876
No 36
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=62.70 E-value=3.6 Score=26.37 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=22.0
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCccc
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPG 51 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G 51 (101)
.+|+|.||-.--.....+..+-.-|+.|.-.|.|
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg 83 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG 83 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEec
Confidence 4788999853211112234456789999999996
No 37
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=59.65 E-value=4 Score=17.21 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=3.8
Q ss_pred cCCCCC
Q 037789 20 FNPWRW 25 (101)
Q Consensus 20 F~P~R~ 25 (101)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 457775
No 38
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=58.54 E-value=4.5 Score=20.46 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=8.7
Q ss_pred eecCCCCCcc
Q 037789 41 PFGEGIRLCP 50 (101)
Q Consensus 41 ~Fg~G~r~C~ 50 (101)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999886
No 39
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=57.71 E-value=9.1 Score=21.18 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhceeeecc
Q 037789 58 LMTLFLNVLATKYSWSQVK 76 (101)
Q Consensus 58 ~~~~~~~~ll~~f~~~~~~ 76 (101)
.|+-+++++|+-|||.+++
T Consensus 61 ~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 61 CIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHhccCCceeee
Confidence 5778899999999999875
No 40
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=53.45 E-value=5.6 Score=25.14 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=24.4
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHH
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAE 53 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 53 (101)
.+|+|++|=.---....+..+.+-|..|.-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 478888884321111224567899999999999965
No 41
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=50.55 E-value=5.2 Score=25.13 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccH
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGA 52 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 52 (101)
-+|+|+||-..--....+..+.+-|+.|.=.|.|.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 48899998532111122456688999999999986
No 42
>PRK00394 transcription factor; Reviewed
Probab=47.68 E-value=11 Score=23.71 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCccc
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPG 51 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G 51 (101)
-+|+|+||-..--....+..+.+-|..|.=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4889999853221112235668899999999998
No 43
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=46.95 E-value=24 Score=22.12 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHH---HHHHHHHHHHHHHHhhceeee
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAE---FSKVLMTLFLNVLATKYSWSQ 74 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~---~a~~~~~~~~~~ll~~f~~~~ 74 (101)
-+++||||-..--....+..+.+-|+.|.=.|.|.. =|..-+.. +..+++++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~-~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARK-YARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHH-HHHHHHHcCCCc
Confidence 478898885321111224566889999999999832 22222222 334455555443
No 44
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=46.72 E-value=13 Score=23.32 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCccc
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPG 51 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G 51 (101)
-+|+||+|-..--....+....+-|+.|.=.|.|
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG 62 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG 62 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe
Confidence 5888998743211111234557899999999998
No 45
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=46.65 E-value=5.6 Score=16.97 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=4.5
Q ss_pred cCCCCCC
Q 037789 20 FNPWRWK 26 (101)
Q Consensus 20 F~P~R~~ 26 (101)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677764
No 46
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=44.92 E-value=26 Score=20.64 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=16.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHH
Q 037789 46 IRLCPGAEFSKVLMTLFLNVLA 67 (101)
Q Consensus 46 ~r~C~G~~~a~~~~~~~~~~ll 67 (101)
.|.|+|..++......++..|-
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHT
T ss_pred CCcCccHHHHHHHHHHHHHHcC
Confidence 3789999999988888877663
No 47
>PLN00062 TATA-box-binding protein; Provisional
Probab=38.24 E-value=9.8 Score=24.04 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=31.1
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHH-HHHH-HHHHHHHHHHhhcee
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAE-FSKV-LMTLFLNVLATKYSW 72 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~-~a~~-~~~~~~~~ll~~f~~ 72 (101)
-+|+||+|-..--....+..+.+-|+.|.=.|.|.. .... ....-++.++++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 588999884321111123456889999999999852 2211 122233455655554
No 48
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=36.66 E-value=8.7 Score=22.42 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=14.5
Q ss_pred CCCceeeecCCCCCcccH
Q 037789 35 SAKNFIPFGEGIRLCPGA 52 (101)
Q Consensus 35 ~~~~~~~Fg~G~r~C~G~ 52 (101)
...+.+|||.|.-.|+|.
T Consensus 103 ~gss~~p~GaGaAaC~aA 120 (131)
T PF14459_consen 103 CGSSNNPFGAGAAACFAA 120 (131)
T ss_pred cCcccCCcCccHHHHHHH
Confidence 345689999999999874
No 49
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.00 E-value=25 Score=26.64 Aligned_cols=8 Identities=38% Similarity=0.726 Sum_probs=4.5
Q ss_pred cCCCCCCC
Q 037789 20 FNPWRWKH 27 (101)
Q Consensus 20 F~P~R~~~ 27 (101)
=|||||+.
T Consensus 581 PDPERWLP 588 (652)
T KOG2376|consen 581 PDPERWLP 588 (652)
T ss_pred CChhhccc
Confidence 34666664
No 50
>PHA03162 hypothetical protein; Provisional
Probab=32.47 E-value=29 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.0
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHH
Q 037789 43 GEGIRLCPGAEFSKVLMTLFLNVL 66 (101)
Q Consensus 43 g~G~r~C~G~~~a~~~~~~~~~~l 66 (101)
++|.+.||++...+-++..-++.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999887766665555544
No 51
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=29.49 E-value=24 Score=17.82 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=8.4
Q ss_pred eecCCCCCcc
Q 037789 41 PFGEGIRLCP 50 (101)
Q Consensus 41 ~Fg~G~r~C~ 50 (101)
-||-|.|.|.
T Consensus 11 ~yGkGsr~C~ 20 (54)
T PTZ00218 11 TYGKGSRQCR 20 (54)
T ss_pred cCCCCCCeee
Confidence 4899999987
No 52
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=29.47 E-value=29 Score=18.48 Aligned_cols=12 Identities=50% Similarity=0.697 Sum_probs=8.8
Q ss_pred CCCCCCcCCCCC
Q 037789 14 YTDPFVFNPWRW 25 (101)
Q Consensus 14 ~~~p~~F~P~R~ 25 (101)
-.||..||||=|
T Consensus 30 s~dp~~fn~~If 41 (69)
T PF11297_consen 30 SDDPNVFNPDIF 41 (69)
T ss_pred CCCccccCcccc
Confidence 357888888865
No 53
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=27.05 E-value=15 Score=19.95 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCcCCCCCCC
Q 037789 9 LNPETYTDPFVFNPWRWKH 27 (101)
Q Consensus 9 ~d~~~~~~p~~F~P~R~~~ 27 (101)
.|+..-|+.+.||.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 4566667888899999985
No 54
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=26.65 E-value=63 Score=14.28 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=12.4
Q ss_pred CCCceeeecCCCCCcc
Q 037789 35 SAKNFIPFGEGIRLCP 50 (101)
Q Consensus 35 ~~~~~~~Fg~G~r~C~ 50 (101)
...+|+++.+..|.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 3567999998888884
No 55
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=24.86 E-value=10 Score=20.65 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred CcCCCCCCCCCCCCcCCCCceeeecCCCCCcccH
Q 037789 19 VFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGA 52 (101)
Q Consensus 19 ~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 52 (101)
+|+||+|-.---..........-|..|.=.|.|.
T Consensus 32 ~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 32 EYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred EEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 6778876321111112345678899999999985
No 56
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=21.43 E-value=45 Score=20.57 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=7.8
Q ss_pred CCCcccHHH
Q 037789 46 IRLCPGAEF 54 (101)
Q Consensus 46 ~r~C~G~~~ 54 (101)
+|.|+|+++
T Consensus 128 PRs~LgMHM 136 (150)
T PF15442_consen 128 PRSCLGMHM 136 (150)
T ss_pred cccccchHH
Confidence 899999884
No 57
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=20.84 E-value=57 Score=10.83 Aligned_cols=6 Identities=50% Similarity=0.949 Sum_probs=3.0
Q ss_pred eeecCC
Q 037789 40 IPFGEG 45 (101)
Q Consensus 40 ~~Fg~G 45 (101)
..||.|
T Consensus 6 Y~FGLG 11 (11)
T PF05953_consen 6 YSFGLG 11 (11)
T ss_pred cccCcC
Confidence 455544
No 58
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=20.25 E-value=29 Score=21.78 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=23.3
Q ss_pred CCcCCCCCCCCCCCCcCCCCceeeecCCCCCcccHH
Q 037789 18 FVFNPWRWKHLAENNVTSAKNFIPFGEGIRLCPGAE 53 (101)
Q Consensus 18 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 53 (101)
-+|+||+|-.---....+....+-|+.|.=.|.|..
T Consensus 121 ~~YePE~fPgliyr~~~p~~t~lIF~sGkivitGak 156 (174)
T cd04517 121 ASYEPELHPGVVYRITGPRATLSIFSTGSVTVTGAR 156 (174)
T ss_pred cEeCCccCCEEEEEECCCcEEEEEeCCCEEEEEecC
Confidence 567888874321111123556889999999999854
Done!